Query 010006
Match_columns 520
No_of_seqs 295 out of 2220
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 19:55:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 7.4E-70 1.6E-74 544.6 33.5 386 87-519 3-392 (393)
2 PLN02241 glucose-1-phosphate a 100.0 7.1E-66 1.5E-70 546.9 44.9 433 87-520 1-436 (436)
3 KOG1322 GDP-mannose pyrophosph 100.0 5.4E-67 1.2E-71 505.5 31.1 364 84-515 5-371 (371)
4 PRK02862 glgC glucose-1-phosph 100.0 2.3E-62 4.9E-67 518.8 43.1 429 87-520 1-429 (429)
5 PRK05293 glgC glucose-1-phosph 100.0 1.1E-55 2.3E-60 462.1 39.4 375 87-520 1-379 (380)
6 PRK00844 glgC glucose-1-phosph 100.0 5.9E-54 1.3E-58 452.2 41.3 385 86-514 2-407 (407)
7 PRK00725 glgC glucose-1-phosph 100.0 6E-54 1.3E-58 454.0 40.2 390 85-515 11-420 (425)
8 COG1208 GCD1 Nucleoside-diphos 100.0 4.6E-50 1E-54 413.7 36.3 353 89-520 1-357 (358)
9 TIGR02091 glgC glucose-1-phosp 100.0 6.3E-49 1.4E-53 408.3 36.4 356 92-485 1-361 (361)
10 TIGR02092 glgD glucose-1-phosp 100.0 7.2E-49 1.6E-53 409.0 33.9 350 89-485 2-355 (369)
11 COG1207 GlmU N-acetylglucosami 100.0 4.1E-46 8.9E-51 372.9 32.5 384 89-520 2-430 (460)
12 TIGR01208 rmlA_long glucose-1- 100.0 1.3E-44 2.8E-49 374.8 35.2 294 91-432 1-299 (353)
13 PRK14355 glmU bifunctional N-a 100.0 1.9E-43 4.2E-48 378.4 36.0 392 87-520 1-430 (459)
14 PRK14352 glmU bifunctional N-a 100.0 2.3E-43 5E-48 379.8 36.3 389 88-520 3-432 (482)
15 PRK14358 glmU bifunctional N-a 100.0 2.4E-42 5.3E-47 370.9 34.2 385 88-520 6-432 (481)
16 PRK09451 glmU bifunctional N-a 100.0 4.3E-42 9.2E-47 367.8 31.8 383 87-520 3-427 (456)
17 PRK14353 glmU bifunctional N-a 100.0 2.7E-41 5.9E-46 360.6 37.1 383 87-520 3-413 (446)
18 TIGR01173 glmU UDP-N-acetylglu 100.0 1.1E-41 2.4E-46 364.0 33.6 381 90-520 1-423 (451)
19 PRK14359 glmU bifunctional N-a 100.0 5.3E-41 1.2E-45 356.7 36.4 375 88-520 1-400 (430)
20 PRK14356 glmU bifunctional N-a 100.0 7.7E-41 1.7E-45 358.2 36.8 387 87-520 3-431 (456)
21 PRK14354 glmU bifunctional N-a 100.0 5.1E-40 1.1E-44 352.0 35.8 385 88-520 1-426 (458)
22 KOG1461 Translation initiation 100.0 1.8E-39 3.9E-44 336.9 30.1 382 88-520 23-423 (673)
23 PRK14357 glmU bifunctional N-a 100.0 8.5E-39 1.8E-43 341.6 34.1 376 90-520 1-416 (448)
24 KOG1460 GDP-mannose pyrophosph 100.0 1.3E-39 2.9E-44 310.1 23.4 330 88-485 1-357 (407)
25 PRK14360 glmU bifunctional N-a 100.0 5.6E-38 1.2E-42 335.5 35.3 381 90-520 2-423 (450)
26 KOG1462 Translation initiation 100.0 1.3E-38 2.9E-43 313.8 21.4 349 86-485 6-402 (433)
27 COG1209 RfbA dTDP-glucose pyro 100.0 1.8E-38 3.9E-43 302.6 20.8 281 90-428 1-285 (286)
28 PF00483 NTP_transferase: Nucl 100.0 3.4E-37 7.3E-42 303.3 23.5 241 91-365 1-247 (248)
29 TIGR01105 galF UTP-glucose-1-p 100.0 4.1E-36 9E-41 302.1 26.1 247 87-364 1-277 (297)
30 cd06428 M1P_guanylylT_A_like_N 100.0 4.7E-35 1E-39 290.1 25.0 235 92-363 1-257 (257)
31 PRK10122 GalU regulator GalF; 100.0 7.6E-35 1.6E-39 293.6 25.9 246 87-364 1-277 (297)
32 cd06425 M1P_guanylylT_B_like_N 100.0 1.3E-34 2.9E-39 282.6 24.5 232 90-364 1-233 (233)
33 PRK15480 glucose-1-phosphate t 100.0 4.4E-34 9.6E-39 286.8 25.8 236 87-364 1-241 (292)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.9E-33 4E-38 275.8 24.7 231 90-363 1-237 (240)
35 TIGR02623 G1P_cyt_trans glucos 100.0 3.6E-33 7.9E-38 276.0 24.3 243 91-369 1-250 (254)
36 cd02541 UGPase_prokaryotic Pro 100.0 4.4E-33 9.5E-38 277.5 24.3 244 90-364 1-265 (267)
37 TIGR01099 galU UTP-glucose-1-p 100.0 4.6E-33 9.9E-38 276.2 23.5 240 90-359 1-260 (260)
38 TIGR01207 rmlA glucose-1-phosp 100.0 7.5E-33 1.6E-37 277.4 23.7 231 91-364 1-237 (286)
39 PRK13389 UTP--glucose-1-phosph 100.0 1.6E-32 3.5E-37 277.1 24.3 244 88-364 7-280 (302)
40 cd04189 G1P_TT_long G1P_TT_lon 100.0 3.4E-32 7.4E-37 265.9 25.5 233 90-365 1-235 (236)
41 cd06422 NTP_transferase_like_1 100.0 1.5E-32 3.3E-37 265.8 21.8 219 91-359 1-221 (221)
42 cd02524 G1P_cytidylyltransfera 100.0 7.5E-32 1.6E-36 266.6 25.2 242 92-367 1-249 (253)
43 cd06915 NTP_transferase_WcbM_l 100.0 3.3E-31 7.2E-36 255.9 23.5 223 92-360 1-223 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 6.6E-31 1.4E-35 252.9 23.4 217 92-351 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 1.1E-30 2.4E-35 252.4 23.7 220 92-360 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 6.4E-30 1.4E-34 244.2 19.2 250 87-367 2-273 (291)
47 cd02508 ADP_Glucose_PP ADP-glu 100.0 4.7E-29 1E-33 237.9 20.7 199 92-350 1-200 (200)
48 cd04197 eIF-2B_epsilon_N The N 100.0 1.7E-29 3.7E-34 244.1 16.8 205 90-309 1-217 (217)
49 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 4.2E-28 9.2E-33 236.3 23.1 223 92-356 1-230 (231)
50 cd02523 PC_cytidylyltransferas 100.0 3E-28 6.5E-33 237.1 21.2 223 92-360 1-229 (229)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 2.3E-26 5.1E-31 229.7 20.3 234 90-355 1-273 (274)
52 cd02540 GT2_GlmU_N_bac N-termi 99.9 7E-25 1.5E-29 213.0 23.6 222 92-356 1-229 (229)
53 cd02507 eIF-2B_gamma_N_like Th 99.9 1.1E-25 2.3E-30 217.4 15.1 204 90-309 1-216 (216)
54 TIGR01479 GMP_PMI mannose-1-ph 99.9 7.8E-24 1.7E-28 226.2 23.4 241 90-361 1-282 (468)
55 cd04198 eIF-2B_gamma_N The N-t 99.9 2.7E-24 5.8E-29 207.3 16.4 201 90-309 1-214 (214)
56 PRK05450 3-deoxy-manno-octulos 99.9 1.2E-22 2.5E-27 199.8 23.4 235 88-363 1-244 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 1.1E-21 2.3E-26 192.2 23.2 227 89-361 1-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 3.6E-22 7.8E-27 187.9 15.5 223 87-364 1-229 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 1.8E-20 3.8E-25 183.5 21.8 226 89-362 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.9 1.5E-20 3.3E-25 199.4 20.8 242 89-361 5-291 (478)
61 COG0836 {ManC} Mannose-1-phosp 99.8 6.1E-20 1.3E-24 179.7 20.4 245 89-363 1-285 (333)
62 COG4750 LicC CTP:phosphocholin 99.8 3.8E-18 8.3E-23 154.2 12.9 218 90-364 1-226 (231)
63 PLN02917 CMP-KDO synthetase 99.8 5.8E-17 1.3E-21 163.1 21.6 235 88-365 46-289 (293)
64 PRK00155 ispD 2-C-methyl-D-ery 99.7 2.9E-15 6.3E-20 145.6 20.3 219 87-364 1-223 (227)
65 TIGR00453 ispD 2-C-methyl-D-er 99.7 2.7E-15 5.9E-20 144.7 19.1 211 91-361 1-215 (217)
66 cd02516 CDP-ME_synthetase CDP- 99.7 2.8E-15 6.1E-20 144.5 18.7 213 91-358 2-217 (218)
67 TIGR00466 kdsB 3-deoxy-D-manno 99.7 2E-14 4.4E-19 140.7 22.6 229 92-356 2-237 (238)
68 PRK09382 ispDF bifunctional 2- 99.6 1.1E-14 2.4E-19 151.1 20.7 208 87-364 3-213 (378)
69 PRK13385 2-C-methyl-D-erythrit 99.6 1.2E-13 2.7E-18 134.5 19.6 219 89-364 2-224 (230)
70 cd02513 CMP-NeuAc_Synthase CMP 99.6 2.5E-13 5.3E-18 131.3 21.4 214 89-361 1-221 (223)
71 PF12804 NTP_transf_3: MobA-li 99.6 1.5E-14 3.3E-19 132.5 12.2 121 92-240 1-123 (160)
72 TIGR00454 conserved hypothetic 99.6 3.2E-14 6.9E-19 133.6 13.3 125 90-241 1-127 (183)
73 TIGR03310 matur_ygfJ molybdenu 99.5 1.3E-13 2.9E-18 129.6 16.0 119 92-235 2-122 (188)
74 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 9.5E-14 2.1E-18 137.8 15.0 72 447-518 213-291 (338)
75 cd05636 LbH_G1P_TT_C_like Puta 99.5 1.1E-13 2.4E-18 127.7 12.7 119 378-520 18-162 (163)
76 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 3.3E-14 7.1E-19 138.1 9.5 96 325-431 31-132 (231)
77 COG2068 Uncharacterized MobA-r 99.5 1.2E-12 2.6E-17 121.5 17.8 192 87-364 3-198 (199)
78 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 3.8E-13 8.1E-18 127.5 13.3 122 395-520 46-177 (193)
79 cd04182 GT_2_like_f GT_2_like_ 99.5 4.4E-13 9.5E-18 125.4 13.5 121 90-235 1-123 (186)
80 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 5.3E-13 1.2E-17 136.1 15.1 61 460-520 220-286 (324)
81 PLN02728 2-C-methyl-D-erythrit 99.5 5.8E-12 1.3E-16 124.0 21.3 218 87-364 22-245 (252)
82 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 3.1E-13 6.7E-18 133.7 12.3 141 372-520 6-171 (254)
83 PRK00317 mobA molybdopterin-gu 99.5 3.2E-12 7E-17 121.1 17.7 114 87-230 1-116 (193)
84 TIGR03584 PseF pseudaminic aci 99.5 1.1E-11 2.3E-16 120.2 21.5 213 92-362 2-219 (222)
85 PRK05289 UDP-N-acetylglucosami 99.4 6.8E-13 1.5E-17 131.7 11.6 141 372-520 9-174 (262)
86 TIGR01852 lipid_A_lpxA acyl-[a 99.4 9.4E-13 2E-17 130.3 12.4 61 459-520 109-170 (254)
87 COG1043 LpxA Acyl-[acyl carrie 99.4 1.2E-12 2.5E-17 123.3 12.1 144 371-520 9-175 (260)
88 PRK12461 UDP-N-acetylglucosami 99.4 1.6E-12 3.6E-17 128.1 13.2 142 372-520 6-170 (255)
89 COG1212 KdsB CMP-2-keto-3-deox 99.4 1.7E-11 3.8E-16 114.6 18.3 234 88-364 2-243 (247)
90 PRK02726 molybdopterin-guanine 99.4 1.4E-11 3.1E-16 117.4 18.0 114 86-229 4-119 (200)
91 TIGR03202 pucB xanthine dehydr 99.4 4.9E-12 1.1E-16 119.5 14.0 125 91-235 2-128 (190)
92 cd04651 LbH_G1P_AT_C Glucose-1 99.4 3.5E-12 7.7E-17 108.5 11.1 98 394-514 7-104 (104)
93 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 6.6E-12 1.4E-16 129.6 14.2 62 459-520 227-294 (343)
94 cd04646 LbH_Dynactin_6 Dynacti 99.4 5.1E-12 1.1E-16 116.6 11.9 123 382-517 4-131 (164)
95 TIGR01852 lipid_A_lpxA acyl-[a 99.4 6.8E-12 1.5E-16 124.1 13.6 140 372-520 5-164 (254)
96 COG2266 GTP:adenosylcobinamide 99.3 1.2E-11 2.5E-16 111.9 12.5 110 90-229 1-112 (177)
97 cd02503 MobA MobA catalyzes th 99.3 7.2E-12 1.6E-16 117.2 11.6 113 90-235 1-115 (181)
98 COG0663 PaaY Carbonic anhydras 99.3 9.5E-12 2.1E-16 113.2 11.9 103 375-491 9-112 (176)
99 PRK00892 lpxD UDP-3-O-[3-hydro 99.3 9.1E-12 2E-16 128.6 13.1 69 448-520 203-276 (343)
100 COG1211 IspD 4-diphosphocytidy 99.3 2.1E-10 4.5E-15 110.2 21.4 222 87-364 2-227 (230)
101 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 8.4E-12 1.8E-16 124.0 11.6 143 372-518 106-273 (338)
102 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 1.2E-11 2.7E-16 117.1 12.1 103 371-480 9-114 (193)
103 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.3 1E-11 2.2E-16 122.9 11.8 105 398-504 46-168 (254)
104 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 2.5E-11 5.5E-16 116.1 12.8 60 460-520 117-183 (205)
105 PF01128 IspD: 2-C-methyl-D-er 99.3 2.7E-10 5.7E-15 109.8 19.7 215 90-363 1-219 (221)
106 PRK05289 UDP-N-acetylglucosami 99.3 2.1E-11 4.6E-16 121.0 12.6 116 399-519 26-155 (262)
107 PRK00560 molybdopterin-guanine 99.3 1.1E-10 2.3E-15 111.1 16.5 106 85-224 4-112 (196)
108 TIGR02287 PaaY phenylacetic ac 99.3 2.8E-11 6E-16 114.3 11.8 118 377-519 8-130 (192)
109 PLN02296 carbonate dehydratase 99.3 2.3E-11 5E-16 120.3 11.8 126 375-519 50-180 (269)
110 TIGR02665 molyb_mobA molybdopt 99.3 3.6E-11 7.9E-16 112.9 12.2 119 90-236 1-121 (186)
111 PRK12461 UDP-N-acetylglucosami 99.3 2.3E-11 4.9E-16 120.0 11.1 117 400-519 24-151 (255)
112 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 5.4E-11 1.2E-15 113.8 12.7 139 374-520 10-165 (205)
113 TIGR01173 glmU UDP-N-acetylglu 99.3 2.6E-11 5.5E-16 129.9 11.4 107 394-510 308-425 (451)
114 cd04745 LbH_paaY_like paaY-lik 99.3 6.6E-11 1.4E-15 108.2 12.5 102 398-514 17-123 (155)
115 COG0746 MobA Molybdopterin-gua 99.2 3.2E-10 6.8E-15 107.0 17.2 113 87-232 2-116 (192)
116 COG1207 GlmU N-acetylglucosami 99.2 3.5E-11 7.5E-16 122.2 10.1 115 399-519 268-386 (460)
117 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 6.2E-11 1.3E-15 96.0 9.6 65 402-485 2-67 (81)
118 TIGR01853 lipid_A_lpxD UDP-3-O 99.2 7.3E-11 1.6E-15 120.5 12.2 102 415-520 151-268 (324)
119 PRK13627 carnitine operon prot 99.2 7.2E-11 1.6E-15 111.8 11.2 114 380-518 13-131 (196)
120 cd02518 GT2_SpsF SpsF is a gly 99.2 1.1E-09 2.4E-14 106.8 19.9 115 92-236 2-121 (233)
121 PLN02472 uncharacterized prote 99.2 1.2E-10 2.6E-15 113.7 12.5 128 373-519 55-187 (246)
122 TIGR03308 phn_thr-fam phosphon 99.2 6.3E-11 1.4E-15 113.1 10.2 33 400-432 20-53 (204)
123 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 1.5E-10 3.2E-15 114.2 10.7 41 469-510 177-217 (272)
124 cd04650 LbH_FBP Ferripyochelin 99.2 4E-10 8.7E-15 102.9 12.5 101 398-513 17-122 (154)
125 cd05636 LbH_G1P_TT_C_like Puta 99.2 3.3E-10 7.2E-15 104.4 11.9 84 398-501 16-102 (163)
126 PRK14490 putative bifunctional 99.1 1.8E-09 4E-14 112.5 18.5 110 87-227 172-283 (369)
127 PRK14489 putative bifunctional 99.1 2.9E-10 6.4E-15 118.3 12.4 121 87-235 3-125 (366)
128 cd00710 LbH_gamma_CA Gamma car 99.1 7.3E-10 1.6E-14 102.6 12.9 121 379-520 4-131 (167)
129 cd04645 LbH_gamma_CA_like Gamm 99.1 7.3E-10 1.6E-14 101.0 12.7 112 384-514 6-122 (153)
130 cd03356 LbH_G1P_AT_C_like Left 99.1 5.1E-10 1.1E-14 90.0 9.9 65 402-485 2-67 (79)
131 PRK09451 glmU bifunctional N-a 99.1 2.7E-10 5.9E-15 122.3 10.7 107 394-510 312-429 (456)
132 TIGR00965 dapD 2,3,4,5-tetrahy 99.1 4.2E-10 9.2E-15 110.0 10.8 21 416-436 142-162 (269)
133 cd03359 LbH_Dynactin_5 Dynacti 99.1 7.9E-10 1.7E-14 101.7 12.1 110 399-515 21-135 (161)
134 PRK14356 glmU bifunctional N-a 99.1 4.3E-10 9.3E-15 120.7 11.8 101 395-504 300-428 (456)
135 PRK14357 glmU bifunctional N-a 99.1 4.9E-10 1.1E-14 120.0 12.0 108 388-504 295-413 (448)
136 cd03350 LbH_THP_succinylT 2,3, 99.1 9.9E-10 2.1E-14 98.5 11.4 34 400-437 32-65 (139)
137 KOG1461 Translation initiation 99.1 1.5E-10 3.3E-15 122.0 7.0 94 377-489 327-423 (673)
138 cd04745 LbH_paaY_like paaY-lik 99.1 7.9E-10 1.7E-14 101.0 10.7 100 400-520 7-111 (155)
139 cd05787 LbH_eIF2B_epsilon eIF- 99.1 8E-10 1.7E-14 88.6 9.4 65 402-485 2-67 (79)
140 PRK14358 glmU bifunctional N-a 99.1 5.7E-10 1.2E-14 120.4 11.1 120 398-520 269-414 (481)
141 PRK13627 carnitine operon prot 99.1 7.1E-10 1.5E-14 105.0 9.8 102 402-520 13-121 (196)
142 cd03360 LbH_AT_putative Putati 99.0 7.4E-10 1.6E-14 104.0 9.6 29 399-431 96-124 (197)
143 PLN02296 carbonate dehydratase 99.0 1.1E-09 2.4E-14 108.4 11.1 103 401-520 54-169 (269)
144 cd04652 LbH_eIF2B_gamma_C eIF- 99.0 1.2E-09 2.6E-14 88.4 8.9 67 396-481 13-80 (81)
145 PRK14355 glmU bifunctional N-a 99.0 1.1E-09 2.5E-14 117.6 11.5 42 398-439 267-310 (459)
146 cd04651 LbH_G1P_AT_C Glucose-1 99.0 1.8E-09 3.9E-14 91.8 10.4 78 401-517 3-80 (104)
147 TIGR02287 PaaY phenylacetic ac 99.0 1.3E-09 2.8E-14 102.9 10.1 102 402-520 11-119 (192)
148 PRK14500 putative bifunctional 99.0 9.3E-09 2E-13 105.6 17.1 109 89-228 160-270 (346)
149 cd04646 LbH_Dynactin_6 Dynacti 99.0 2E-09 4.3E-14 99.3 9.8 43 475-518 84-126 (164)
150 PRK14353 glmU bifunctional N-a 99.0 2.3E-09 5E-14 114.7 11.8 121 375-504 278-410 (446)
151 cd04180 UGPase_euk_like Eukary 99.0 4.6E-08 9.9E-13 97.2 19.9 214 90-314 1-241 (266)
152 cd05824 LbH_M1P_guanylylT_C Ma 99.0 3E-09 6.5E-14 85.9 9.3 63 400-485 6-68 (80)
153 TIGR00965 dapD 2,3,4,5-tetrahy 99.0 3.4E-09 7.3E-14 103.7 10.8 37 468-504 173-209 (269)
154 PRK14360 glmU bifunctional N-a 99.0 2.4E-09 5.3E-14 114.7 10.8 129 378-510 281-425 (450)
155 PRK14352 glmU bifunctional N-a 99.0 3.2E-09 6.9E-14 114.9 11.5 80 398-480 270-352 (482)
156 TIGR03308 phn_thr-fam phosphon 99.0 3.4E-09 7.4E-14 101.1 10.2 58 374-432 11-70 (204)
157 TIGR03570 NeuD_NnaD sugar O-ac 99.0 6.7E-09 1.5E-13 98.3 12.2 40 459-504 143-183 (201)
158 PRK14354 glmU bifunctional N-a 99.0 3.6E-09 7.7E-14 113.7 11.5 84 398-484 264-350 (458)
159 PRK11830 dapD 2,3,4,5-tetrahyd 98.9 7.1E-09 1.5E-13 102.3 12.4 81 402-486 129-212 (272)
160 cd04645 LbH_gamma_CA_like Gamm 98.9 4.4E-09 9.6E-14 95.9 10.1 100 399-519 5-109 (153)
161 cd00710 LbH_gamma_CA Gamma car 98.9 4.6E-09 9.9E-14 97.3 10.3 102 401-518 4-112 (167)
162 PLN02472 uncharacterized prote 98.9 3.7E-09 7.9E-14 103.4 10.0 100 400-520 66-176 (246)
163 cd03358 LbH_WxcM_N_like WcxM-l 98.9 3.7E-09 8.1E-14 91.8 8.9 70 398-487 15-86 (119)
164 COG1043 LpxA Acyl-[acyl carrie 98.9 4E-09 8.7E-14 99.6 9.3 115 400-518 28-155 (260)
165 COG0663 PaaY Carbonic anhydras 98.9 6.2E-09 1.4E-13 94.9 9.8 102 402-520 14-122 (176)
166 cd04650 LbH_FBP Ferripyochelin 98.9 7.5E-09 1.6E-13 94.5 10.4 99 400-519 7-110 (154)
167 cd03350 LbH_THP_succinylT 2,3, 98.9 9.1E-09 2E-13 92.3 10.5 48 468-519 75-122 (139)
168 cd04193 UDPGlcNAc_PPase UDPGlc 98.9 1.2E-07 2.6E-12 96.6 19.8 212 88-314 14-256 (323)
169 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.9 8.6E-09 1.9E-13 100.2 10.4 101 374-484 89-194 (231)
170 cd03360 LbH_AT_putative Putati 98.9 2.1E-08 4.6E-13 94.1 12.6 15 469-483 151-165 (197)
171 cd05787 LbH_eIF2B_epsilon eIF- 98.9 7E-09 1.5E-13 83.1 7.9 78 417-515 1-78 (79)
172 cd03356 LbH_G1P_AT_C_like Left 98.9 9.1E-09 2E-13 82.7 8.5 66 395-479 12-79 (79)
173 cd04649 LbH_THP_succinylT_puta 98.9 1.6E-08 3.5E-13 89.8 10.6 64 415-489 47-110 (147)
174 PRK14359 glmU bifunctional N-a 98.9 1.1E-08 2.4E-13 108.9 11.2 111 385-511 284-403 (430)
175 COG1083 NeuA CMP-N-acetylneura 98.8 1.5E-07 3.3E-12 87.8 15.5 217 87-365 1-224 (228)
176 KOG1462 Translation initiation 98.8 1.1E-08 2.3E-13 102.7 7.4 90 378-486 329-420 (433)
177 cd05824 LbH_M1P_guanylylT_C Ma 98.7 5.9E-08 1.3E-12 78.3 9.1 63 398-479 16-80 (80)
178 COG2171 DapD Tetrahydrodipicol 98.7 3.7E-08 7.9E-13 95.0 8.9 50 384-437 109-160 (271)
179 PLN02694 serine O-acetyltransf 98.7 3.6E-08 7.7E-13 97.5 8.9 79 400-484 167-246 (294)
180 cd05635 LbH_unknown Uncharacte 98.7 8.6E-08 1.9E-12 81.0 9.2 66 399-485 29-96 (101)
181 PLN02474 UTP--glucose-1-phosph 98.7 1E-05 2.2E-10 85.7 26.0 209 87-314 77-309 (469)
182 TIGR03570 NeuD_NnaD sugar O-ac 98.7 9.5E-08 2.1E-12 90.4 9.7 49 471-520 138-186 (201)
183 PTZ00339 UDP-N-acetylglucosami 98.7 1.9E-06 4.1E-11 91.9 20.3 210 89-314 106-351 (482)
184 cd03358 LbH_WxcM_N_like WcxM-l 98.7 7.4E-08 1.6E-12 83.6 8.0 32 473-504 66-97 (119)
185 PRK10502 putative acyl transfe 98.7 1E-07 2.2E-12 89.5 9.2 32 400-431 72-107 (182)
186 cd03359 LbH_Dynactin_5 Dynacti 98.6 1.4E-07 3.1E-12 86.7 9.8 74 415-504 21-107 (161)
187 cd05635 LbH_unknown Uncharacte 98.6 3.2E-07 6.9E-12 77.5 10.7 67 398-484 10-78 (101)
188 TIGR03536 DapD_gpp 2,3,4,5-tet 98.6 1.6E-07 3.5E-12 92.9 10.0 13 506-518 267-279 (341)
189 TIGR03535 DapD_actino 2,3,4,5- 98.6 1.8E-07 3.8E-12 92.2 9.3 14 506-519 242-255 (319)
190 PRK11132 cysE serine acetyltra 98.6 2.2E-07 4.8E-12 91.8 9.0 79 399-484 147-227 (273)
191 TIGR01172 cysE serine O-acetyl 98.5 3.9E-07 8.4E-12 83.9 9.5 37 400-438 68-104 (162)
192 PRK09527 lacA galactoside O-ac 98.5 4E-07 8.6E-12 86.6 9.6 50 381-432 59-112 (203)
193 TIGR02092 glgD glucose-1-phosp 98.5 3.5E-07 7.5E-12 95.6 9.8 60 405-485 278-338 (369)
194 PRK05293 glgC glucose-1-phosph 98.5 2.5E-07 5.5E-12 96.9 8.6 91 372-483 283-379 (380)
195 cd04647 LbH_MAT_like Maltose O 98.5 4.9E-07 1.1E-11 77.0 8.5 33 401-433 3-39 (109)
196 PLN02357 serine acetyltransfer 98.5 4E-07 8.7E-12 92.6 9.2 80 400-485 233-313 (360)
197 TIGR02091 glgC glucose-1-phosp 98.5 4E-07 8.6E-12 94.8 9.3 63 402-484 280-343 (361)
198 cd03357 LbH_MAT_GAT Maltose O- 98.5 7.1E-07 1.5E-11 82.8 9.8 34 399-432 62-99 (169)
199 TIGR01208 rmlA_long glucose-1- 98.5 5.3E-07 1.1E-11 93.6 9.8 83 383-485 254-339 (353)
200 cd00208 LbetaH Left-handed par 98.5 3.8E-07 8.2E-12 72.4 6.8 23 497-520 55-77 (78)
201 cd04649 LbH_THP_succinylT_puta 98.5 8.2E-07 1.8E-11 79.0 9.4 29 399-431 13-41 (147)
202 KOG3121 Dynactin, subunit p25 98.5 1.6E-07 3.5E-12 81.4 4.5 102 398-519 38-139 (184)
203 PRK10092 maltose O-acetyltrans 98.5 9.1E-07 2E-11 83.0 9.9 34 398-431 72-109 (183)
204 PRK09677 putative lipopolysacc 98.5 8.6E-07 1.9E-11 83.9 9.9 17 415-431 65-81 (192)
205 cd00208 LbetaH Left-handed par 98.5 6.9E-07 1.5E-11 70.9 7.9 35 401-435 2-38 (78)
206 PRK02862 glgC glucose-1-phosph 98.4 5.8E-07 1.3E-11 95.8 9.2 27 411-438 304-330 (429)
207 PLN02739 serine acetyltransfer 98.4 6.1E-07 1.3E-11 90.6 8.3 79 400-484 212-291 (355)
208 PRK00725 glgC glucose-1-phosph 98.4 7.1E-07 1.5E-11 95.0 9.1 54 412-485 324-377 (425)
209 COG2171 DapD Tetrahydrodipicol 98.4 9.2E-07 2E-11 85.5 8.8 59 374-432 111-173 (271)
210 PRK11132 cysE serine acetyltra 98.4 6.7E-07 1.5E-11 88.4 7.9 35 399-437 141-177 (273)
211 TIGR03536 DapD_gpp 2,3,4,5-tet 98.4 1.4E-06 3E-11 86.3 9.6 16 415-430 224-239 (341)
212 COG1045 CysE Serine acetyltran 98.4 9.2E-07 2E-11 81.8 7.8 81 399-485 73-154 (194)
213 PRK09527 lacA galactoside O-ac 98.3 3.4E-06 7.4E-11 80.3 10.6 29 402-430 58-90 (203)
214 cd00897 UGPase_euk Eukaryotic 98.3 6.6E-05 1.4E-09 75.6 20.3 209 88-315 2-234 (300)
215 COG0448 GlgC ADP-glucose pyrop 98.3 2E-06 4.4E-11 87.8 9.4 53 382-435 295-348 (393)
216 PLN02241 glucose-1-phosphate a 98.3 1.8E-06 3.9E-11 92.3 9.5 118 384-514 316-436 (436)
217 PRK10502 putative acyl transfe 98.3 2.4E-06 5.1E-11 80.3 8.5 33 400-432 52-88 (182)
218 PF02348 CTP_transf_3: Cytidyl 98.3 8.7E-05 1.9E-09 71.3 19.6 177 91-307 1-185 (217)
219 PRK00844 glgC glucose-1-phosph 98.3 3E-06 6.6E-11 89.7 10.1 57 382-438 314-371 (407)
220 cd03354 LbH_SAT Serine acetylt 98.3 6E-06 1.3E-10 69.6 9.8 60 400-485 9-71 (101)
221 TIGR01172 cysE serine O-acetyl 98.3 2.6E-06 5.7E-11 78.4 8.0 43 468-519 113-155 (162)
222 COG1208 GCD1 Nucleoside-diphos 98.3 2.8E-06 6.1E-11 88.3 8.7 79 379-486 263-342 (358)
223 cd03354 LbH_SAT Serine acetylt 98.2 4.1E-06 8.9E-11 70.6 7.8 29 476-504 56-84 (101)
224 PLN02694 serine O-acetyltransf 98.2 2.8E-06 6.1E-11 84.2 7.7 74 398-489 159-233 (294)
225 cd03357 LbH_MAT_GAT Maltose O- 98.2 1.1E-05 2.3E-10 74.9 11.0 14 470-483 120-133 (169)
226 cd05825 LbH_wcaF_like wcaF-lik 98.2 5.3E-06 1.1E-10 70.8 7.6 33 400-432 4-40 (107)
227 TIGR03535 DapD_actino 2,3,4,5- 98.2 1.3E-05 2.7E-10 79.3 11.0 16 418-433 196-211 (319)
228 PRK09677 putative lipopolysacc 98.2 8.6E-06 1.9E-10 77.1 9.7 35 399-433 65-103 (192)
229 PRK10191 putative acyl transfe 98.2 5E-06 1.1E-10 75.0 7.5 79 399-484 47-126 (146)
230 PRK10191 putative acyl transfe 98.2 1.5E-05 3.3E-10 71.8 10.5 15 470-484 94-108 (146)
231 PRK10092 maltose O-acetyltrans 98.1 1.7E-05 3.7E-10 74.4 9.9 36 401-436 69-108 (183)
232 PRK13412 fkp bifunctional fuco 98.1 5.1E-05 1.1E-09 86.7 14.2 199 207-435 154-374 (974)
233 COG1861 SpsF Spore coat polysa 98.0 8.2E-05 1.8E-09 70.1 12.6 118 87-235 1-124 (241)
234 KOG4042 Dynactin subunit p27/W 98.0 7.2E-06 1.6E-10 71.9 5.1 56 383-438 8-74 (190)
235 PF07959 Fucokinase: L-fucokin 98.0 3.5E-05 7.6E-10 81.5 11.3 94 207-314 55-158 (414)
236 PLN02357 serine acetyltransfer 98.0 2.5E-05 5.5E-10 79.6 9.8 27 459-485 304-330 (360)
237 PF01704 UDPGP: UTP--glucose-1 98.0 0.00045 9.6E-09 73.0 19.2 211 88-315 55-289 (420)
238 cd03349 LbH_XAT Xenobiotic acy 98.0 3.3E-05 7.3E-10 69.7 9.1 19 415-433 21-39 (145)
239 PLN02739 serine acetyltransfer 98.0 3E-05 6.4E-10 78.6 9.6 33 400-436 206-240 (355)
240 cd04647 LbH_MAT_like Maltose O 98.0 2.6E-05 5.6E-10 66.3 7.3 13 415-427 27-39 (109)
241 cd06424 UGGPase UGGPase cataly 97.9 0.00059 1.3E-08 69.1 16.7 214 91-315 2-253 (315)
242 COG1045 CysE Serine acetyltran 97.9 7.3E-05 1.6E-09 69.3 8.9 12 418-429 122-133 (194)
243 COG0110 WbbJ Acetyltransferase 97.8 5.2E-05 1.1E-09 71.3 6.5 36 398-433 66-105 (190)
244 KOG4750 Serine O-acetyltransfe 97.7 5.4E-05 1.2E-09 71.1 5.7 37 400-438 155-191 (269)
245 KOG1460 GDP-mannose pyrophosph 97.7 8.2E-05 1.8E-09 72.7 6.9 91 373-485 290-388 (407)
246 PLN02435 probable UDP-N-acetyl 97.6 0.0029 6.3E-08 67.7 18.3 209 88-314 115-364 (493)
247 PRK00576 molybdopterin-guanine 97.6 0.00049 1.1E-08 64.2 10.6 96 110-230 3-102 (178)
248 KOG1322 GDP-mannose pyrophosph 97.6 6.4E-05 1.4E-09 74.7 4.6 67 415-494 276-342 (371)
249 COG4284 UDP-glucose pyrophosph 97.6 0.0039 8.4E-08 65.5 17.4 208 88-312 104-337 (472)
250 KOG4750 Serine O-acetyltransfe 97.6 0.00019 4E-09 67.5 7.0 76 423-520 150-233 (269)
251 TIGR02353 NRPS_term_dom non-ri 97.5 0.00018 3.8E-09 81.1 7.5 35 399-437 597-632 (695)
252 TIGR02353 NRPS_term_dom non-ri 97.4 0.00058 1.3E-08 77.0 9.1 94 398-504 111-208 (695)
253 PLN02830 UDP-sugar pyrophospho 97.3 0.025 5.4E-07 62.4 20.7 218 88-315 127-384 (615)
254 cd03349 LbH_XAT Xenobiotic acy 97.2 0.00087 1.9E-08 60.5 6.6 22 416-437 2-25 (145)
255 KOG2638 UDP-glucose pyrophosph 97.2 0.13 2.8E-06 53.1 22.3 352 88-479 102-497 (498)
256 COG0110 WbbJ Acetyltransferase 97.1 0.0027 5.8E-08 59.6 9.7 21 498-519 136-156 (190)
257 COG4801 Predicted acyltransfer 97.1 0.0016 3.5E-08 61.6 7.1 75 411-504 29-104 (277)
258 COG4801 Predicted acyltransfer 97.0 0.0032 6.8E-08 59.7 8.5 68 400-485 34-103 (277)
259 PF00132 Hexapep: Bacterial tr 97.0 0.00068 1.5E-08 45.5 3.0 33 399-431 1-35 (36)
260 KOG3121 Dynactin, subunit p25 97.0 0.0011 2.4E-08 57.9 4.7 100 399-520 33-134 (184)
261 KOG4042 Dynactin subunit p27/W 96.9 0.0013 2.7E-08 58.1 4.7 31 400-430 9-41 (190)
262 PF00132 Hexapep: Bacterial tr 96.6 0.0016 3.6E-08 43.6 2.4 13 471-483 4-16 (36)
263 PF14602 Hexapep_2: Hexapeptid 96.3 0.0047 1E-07 41.0 3.1 30 400-430 2-32 (34)
264 PF14602 Hexapep_2: Hexapeptid 95.9 0.0087 1.9E-07 39.8 2.8 11 472-482 5-15 (34)
265 TIGR03552 F420_cofC 2-phospho- 95.3 0.09 1.9E-06 49.5 8.7 86 121-229 30-117 (195)
266 cd00761 Glyco_tranf_GTA_type G 95.2 0.42 9.1E-06 41.2 12.2 99 114-229 2-103 (156)
267 PF07959 Fucokinase: L-fucokin 93.1 0.16 3.4E-06 54.0 5.8 96 335-473 226-323 (414)
268 COG1920 Predicted nucleotidylt 91.4 2.4 5.3E-05 39.6 10.5 105 90-228 1-111 (210)
269 PF00535 Glycos_transf_2: Glyc 91.3 3.4 7.4E-05 36.3 11.7 111 114-241 3-116 (169)
270 cd06442 DPM1_like DPM1_like re 88.4 8 0.00017 36.4 12.3 106 115-237 3-112 (224)
271 PLN02726 dolichyl-phosphate be 87.6 2.8 6.1E-05 40.7 8.7 49 187-238 79-128 (243)
272 cd04188 DPG_synthase DPG_synth 86.7 2.1 4.7E-05 40.3 7.1 49 187-238 68-117 (211)
273 cd06434 GT2_HAS Hyaluronan syn 86.3 9.6 0.00021 36.2 11.6 97 114-229 5-103 (235)
274 cd02525 Succinoglycan_BP_ExoA 84.0 17 0.00037 34.5 12.2 104 115-236 6-114 (249)
275 cd04186 GT_2_like_c Subfamily 83.9 19 0.00041 31.5 11.7 97 115-231 3-102 (166)
276 cd04179 DPM_DPG-synthase_like 82.2 19 0.00041 32.5 11.2 108 115-239 3-115 (185)
277 cd06423 CESA_like CESA_like is 80.2 25 0.00055 30.6 11.1 101 115-231 3-106 (180)
278 cd06439 CESA_like_1 CESA_like_ 76.0 62 0.0013 30.9 13.2 90 122-230 42-136 (251)
279 cd04192 GT_2_like_e Subfamily 74.0 41 0.00088 31.4 11.2 106 114-234 2-113 (229)
280 cd06427 CESA_like_2 CESA_like_ 72.1 70 0.0015 30.6 12.4 109 115-239 7-120 (241)
281 cd06433 GT_2_WfgS_like WfgS an 71.9 52 0.0011 29.8 11.0 96 115-230 4-102 (202)
282 TIGR01556 rhamnosyltran L-rham 71.8 49 0.0011 32.6 11.5 91 123-232 9-102 (281)
283 cd04185 GT_2_like_b Subfamily 71.2 59 0.0013 29.9 11.4 100 115-229 3-105 (202)
284 cd06438 EpsO_like EpsO protein 71.1 81 0.0018 28.6 12.8 104 114-235 2-112 (183)
285 PTZ00260 dolichyl-phosphate be 70.4 1.2E+02 0.0027 31.0 14.3 135 187-349 148-290 (333)
286 TIGR03469 HonB hopene-associat 69.9 76 0.0016 33.2 12.9 104 122-235 53-165 (384)
287 PRK10073 putative glycosyl tra 69.6 65 0.0014 33.0 12.1 98 122-237 19-119 (328)
288 KOG2388 UDP-N-acetylglucosamin 68.0 5.5 0.00012 42.4 3.7 71 88-161 96-180 (477)
289 cd02510 pp-GalNAc-T pp-GalNAc- 67.3 81 0.0018 31.4 12.1 104 115-233 4-113 (299)
290 cd04195 GT2_AmsE_like GT2_AmsE 66.3 89 0.0019 28.5 11.4 99 114-230 3-107 (201)
291 PRK14583 hmsR N-glycosyltransf 65.7 67 0.0015 34.3 11.7 92 122-230 88-182 (444)
292 cd04184 GT2_RfbC_Mx_like Myxoc 65.0 1.1E+02 0.0024 27.9 11.8 103 115-234 7-115 (202)
293 cd04187 DPM1_like_bac Bacteria 62.2 1E+02 0.0022 27.7 10.9 46 187-236 66-112 (181)
294 PRK11204 N-glycosyltransferase 61.5 1E+02 0.0022 32.4 12.1 93 122-231 67-162 (420)
295 cd02526 GT2_RfbF_like RfbF is 61.2 1.2E+02 0.0025 28.6 11.5 86 122-225 11-97 (237)
296 PF01983 CofC: Guanylyl transf 60.0 6.7 0.00015 37.8 2.5 108 90-228 1-113 (217)
297 cd02520 Glucosylceramide_synth 59.2 1.3E+02 0.0029 27.6 11.2 102 115-228 7-111 (196)
298 TIGR03111 glyc2_xrt_Gpos1 puta 58.0 1.6E+02 0.0034 31.4 12.9 93 122-231 62-159 (439)
299 KOG2978 Dolichol-phosphate man 56.2 1.8E+02 0.0039 27.5 14.1 102 122-241 19-126 (238)
300 cd06420 GT2_Chondriotin_Pol_N 55.0 1.2E+02 0.0026 27.0 10.0 99 115-228 3-104 (182)
301 cd04196 GT_2_like_d Subfamily 52.6 1.5E+02 0.0033 27.0 10.5 101 114-230 3-106 (214)
302 PRK10714 undecaprenyl phosphat 52.5 1.7E+02 0.0037 29.8 11.5 46 187-236 76-122 (325)
303 cd02522 GT_2_like_a GT_2_like_ 52.1 1.6E+02 0.0034 27.3 10.6 95 114-232 4-101 (221)
304 TIGR03472 HpnI hopanoid biosyn 51.9 1.2E+02 0.0025 31.6 10.4 94 122-230 54-153 (373)
305 PF04519 Bactofilin: Polymer-f 51.8 32 0.00069 28.5 5.0 20 458-477 37-56 (101)
306 cd06421 CESA_CelA_like CESA_Ce 51.6 2.1E+02 0.0045 26.7 12.0 99 115-230 7-111 (234)
307 PF13641 Glyco_tranf_2_3: Glyc 50.5 28 0.00061 32.8 5.1 106 114-234 6-117 (228)
308 cd06913 beta3GnTL1_like Beta 1 49.1 2E+02 0.0043 26.8 10.8 107 115-232 3-113 (219)
309 PRK13412 fkp bifunctional fuco 46.9 27 0.00059 41.0 5.0 17 298-314 192-211 (974)
310 cd06436 GlcNAc-1-P_transferase 46.3 2.4E+02 0.0051 25.8 11.4 102 115-228 3-114 (191)
311 cd06435 CESA_NdvC_like NdvC_li 44.3 2.6E+02 0.0056 26.2 10.9 98 114-229 3-110 (236)
312 COG1216 Predicted glycosyltran 43.4 2.4E+02 0.0053 28.2 10.9 102 122-239 16-120 (305)
313 PRK10018 putative glycosyl tra 40.9 3.8E+02 0.0082 26.7 12.7 90 122-230 18-112 (279)
314 PRK13915 putative glucosyl-3-p 40.1 3E+02 0.0065 27.8 11.0 50 187-239 101-153 (306)
315 COG1215 Glycosyltransferases, 40.1 2.1E+02 0.0046 29.9 10.4 211 122-367 67-284 (439)
316 PRK11498 bcsA cellulose syntha 39.0 2.4E+02 0.0052 33.0 11.0 96 123-240 275-375 (852)
317 cd02511 Beta4Glucosyltransfera 38.9 3.4E+02 0.0074 25.6 11.4 92 115-230 6-98 (229)
318 PRK10063 putative glycosyl tra 28.4 5.5E+02 0.012 24.8 12.6 91 122-231 14-109 (248)
319 COG0381 WecB UDP-N-acetylgluco 26.4 1.6E+02 0.0035 30.8 6.3 81 127-218 22-105 (383)
320 COG1664 CcmA Integral membrane 25.7 2.4E+02 0.0051 25.4 6.5 92 419-514 21-116 (146)
321 TIGR02990 ectoine_eutA ectoine 24.3 5.9E+02 0.013 24.8 9.6 123 89-227 71-203 (239)
322 TIGR03030 CelA cellulose synth 23.9 6.3E+02 0.014 28.9 11.1 48 187-238 214-262 (713)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-70 Score=544.61 Aligned_cols=386 Identities=42% Similarity=0.757 Sum_probs=351.4
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++++.|+|||||.|+||.|||+.++||.+|++|+|+|||++|+||.++||++|.|+++|+..+|.+||+.+++|.++ .
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~--~ 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLD--R 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccc--c
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999654 3
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
..+++.++++++...++.|+.||++++++-++++++...+.+|+++||++|++|+.++++.|.++++++|+++.+++.++
T Consensus 81 ~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~e 160 (393)
T COG0448 81 KNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREE 160 (393)
T ss_pred ccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHh
Confidence 34668899888765667799999999999999999888899999999999999999999999999999999999999999
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~ 323 (520)
++.||++.+|++++|++|.|||..... ...+++||+|+|++++|.++|++... +..||
T Consensus 161 as~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~Df 221 (393)
T COG0448 161 ASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDF 221 (393)
T ss_pred hhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccCccccc
Confidence 999999999999999999999997211 12279999999999999999986543 45789
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccccceEE
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVI 402 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~I 402 (520)
+.++||.+++++ +++||+++|||.||+|+++|++||+.++... |.+.+++++++|++.....||+++. ++.+.+|.|
T Consensus 222 gkdiIp~~~~~~-~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~-~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv 299 (393)
T COG0448 222 GKDIIPKLLERG-KVYAYEFSGYWRDVGTIDSYYEANMDLLSPQ-PELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLV 299 (393)
T ss_pred hHHHHHHHHhcC-CEEEEeccchhhhcccHHHHHHhhHHhcCCC-CcccccCCCCceeecCCCCCCceEecCceEeeeee
Confidence 999999999955 5999999999999999999999999999844 7788999999999999999999997 566799999
Q ss_pred CCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcE
Q 010006 403 GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 482 (520)
Q Consensus 403 g~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~ 482 (520)
+.||+|.+ .|.||+|+.+++|+++|.|++|++|++ +.||+||+|++|||++||.|++|++
T Consensus 300 ~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g~~ 359 (393)
T COG0448 300 AGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEGVV 359 (393)
T ss_pred eCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCCcE
Confidence 99999999 889999999999999999999999997 6999999999999999999999999
Q ss_pred EecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 483 IVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 483 i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
|.+.. ++..+.. +.+. +++++|+++++++.+.+
T Consensus 360 i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 360 IGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred EcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 98755 5666655 6666 88899999999987754
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=7.1e-66 Score=546.88 Aligned_cols=433 Identities=70% Similarity=1.163 Sum_probs=381.0
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|+|||||||+|+||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+++.|+|+.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999988999999999999999999999999999999999986655433333
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcC---cceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN---VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~---~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
...++.++...|...++.|++|++++++++++++++.. .++||+++||++++.|+.+++++|+++++++|+++.+++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~ 160 (436)
T PLN02241 81 GDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVD 160 (436)
T ss_pred CCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecc
Confidence 33446666655543344578999999999998876532 579999999999999999999999999999999998887
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
.+++..||++.+|++++|.+|.|||..+....+++|+++|.+++.......+++++|+|+|++++|..++++.++...+|
T Consensus 161 ~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~ 240 (436)
T PLN02241 161 ESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDF 240 (436)
T ss_pred hhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccch
Confidence 66678999999998899999999998766667889999988776544344679999999999999987887666555578
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEEC
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 403 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig 403 (520)
..|+++.+++++.++++|.+++||.||+++++|+++++.++... +...+++++.++++.....||+.+.++.+.+++|+
T Consensus 241 ~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~ 319 (436)
T PLN02241 241 GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP-PKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIIS 319 (436)
T ss_pred hHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCC-chhhccCCCCcccccCCCCCCcEecCCeEEEeEEc
Confidence 89999999987789999999999999999999999999998765 54566777889999888889999988888889999
Q ss_pred CCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEE
Q 010006 404 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483 (520)
Q Consensus 404 ~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 483 (520)
++|.|++|.|++|+||++|.||++|+|.++++|+.++|+..+........|++++.||++|+|++++|++++.||++|+|
T Consensus 320 ~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 320 HGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVI 399 (436)
T ss_pred CCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEE
Confidence 99999988899999999999999999999999999999887777766667776678999999999999999999999999
Q ss_pred ecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 484 VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 484 ~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.+++++.+..++|++|+|++|+|+||+++.|++||+|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 400 INKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred ecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 9999999999999999999998899999999999986
No 3
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=5.4e-67 Score=505.45 Aligned_cols=364 Identities=42% Similarity=0.692 Sum_probs=322.1
Q ss_pred cccccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCC
Q 010006 84 PEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (520)
Q Consensus 84 ~~~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~ 163 (520)
|.+ +.|+||||.||.||||+|||.++||||+|++ +||||+|++++|.++||++|++.++|++++++.|+.+.|..++
T Consensus 5 ~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg-n~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~l- 81 (371)
T KOG1322|consen 5 PAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG-NKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKEL- 81 (371)
T ss_pred ccc-cceeEEEEecCCCceeeceeccCCCcccccC-cchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhcc-
Confidence 444 7899999999999999999999999999998 6799999999999999999999999999999999999885443
Q ss_pred CCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 164 ~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
+ |+++..+|+ +|.|++|++++.++.+|..++ .+|+||+||++++++|++|+++|+++++++|+++++++
T Consensus 82 ---g---Vei~~s~et--eplgtaGpl~laR~~L~~~~~---~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 82 ---G---VEILASTET--EPLGTAGPLALARDFLWVFED---APFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred ---c---eEEEEEecc--CCCcccchHHHHHHHhhhcCC---CcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 2 899998884 489999999999999987764 48999999999999999999999999999999999987
Q ss_pred cccCcceEEEEeCC-CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 244 EKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 244 ~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
+ ++.||+|..|+ +|+|.+|.|||+... +.-.++|+|+|++++|++++ .+|+.
T Consensus 151 e--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~ptS-- 203 (371)
T KOG1322|consen 151 E--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPTS-- 203 (371)
T ss_pred C--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hcccc--
Confidence 5 89999999998 799999999999443 23567999999999999887 34433
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceE-
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSV- 401 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~- 401 (520)
|+++++|.+++ ++++++|.++|||+|||+|+||+.+ +.||+.+.+.++.++++||+.+.++++.|++
T Consensus 204 iekEifP~~a~-~~~l~a~~l~gfWmDIGqpkdf~~g-----------~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~ 271 (371)
T KOG1322|consen 204 IEKEIFPAMAE-EHQLYAFDLPGFWMDIGQPKDFLTG-----------FSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIA 271 (371)
T ss_pred hhhhhhhhhhh-cCceEEEecCchhhhcCCHHHHHHH-----------HHHHHhhCcccCCccccCCccccccEeecccc
Confidence 89999998887 8999999999999999999999999 4567777889999999999999988887754
Q ss_pred -ECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 -IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 -Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
||++|.|++ +++||++|+|++++.|++|.+|++|+|+++++.+..+.++.+ .||.++ +|+++++||+|
T Consensus 272 ~iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~--~IG~~~-----~id~~a~lG~n 340 (371)
T KOG1322|consen 272 SIGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNV--PIGIWA-----RIDKNAVLGKN 340 (371)
T ss_pred ccCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccc--cccCce-----EEecccEeccc
Confidence 555565553 699999999999999999999999999999998888877774 444333 99999999999
Q ss_pred cEEecCCCcCCcccccCCeEEccCeEEEcCCCEeC
Q 010006 481 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 481 ~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~ 515 (520)
|+|.|.+.++++ ++..++++++.|.++++|.
T Consensus 341 V~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 341 VIVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred eEEecccccccc----eeEEeccceeecccccccC
Confidence 999999999886 7899999999999998873
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.3e-62 Score=518.77 Aligned_cols=429 Identities=66% Similarity=1.129 Sum_probs=368.2
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++++|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 568999999999999999999999999999998779999999999999999999999999999999998743221 11
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
..+++.++...|...++.|++||++++++++.+++....++|||++||++++.|+.++++.|++.++++|+++.+.+.++
T Consensus 78 ~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 157 (429)
T PRK02862 78 SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD 157 (429)
T ss_pred CCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh
Confidence 22345555555544556677999999999999987544478999999999999999999999999999999988776556
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcccc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~d 326 (520)
+..||++.+|++++|..|.|||.......+.+|+++|..++.......+++++|+|+|++++|.+++++. ++..++.++
T Consensus 158 ~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~~~~d 236 (429)
T PRK02862 158 ASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTDFGKE 236 (429)
T ss_pred cccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhhhHHH
Confidence 7899999999889999999999866556677888888777655555567999999999999998777653 234567789
Q ss_pred chHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCc
Q 010006 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGC 406 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~ 406 (520)
+|+.+++ +.++++|.+++||.|++|+++|+++|+.++....+....+.+..++++.+.+.||+.+.++.+++++||++|
T Consensus 237 il~~l~~-~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~ 315 (429)
T PRK02862 237 IIPEAIR-DYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGC 315 (429)
T ss_pred HHHHHhc-cCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCC
Confidence 9999986 789999999999999999999999999988443355566777889999999999999988888999999999
Q ss_pred EEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecC
Q 010006 407 VIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 486 (520)
Q Consensus 407 ~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 486 (520)
.|.++.|.+|+||.+|+||++|.|.+|++|+.++|+.........-.+..++.||++|.|++|+|+++|+||++|++.|+
T Consensus 316 ~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 316 IIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred EECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecC
Confidence 99448999999999999999999999999999888876654444445555689999999999999999999999999999
Q ss_pred CCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 487 DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 487 ~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.+.+..+..++++|++|+|+|++++++++||+|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 396 DNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred CCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999999976
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.1e-55 Score=462.14 Aligned_cols=375 Identities=38% Similarity=0.670 Sum_probs=313.8
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|+|||||||+||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++|+.+++.+|+++...|++....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 80 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN 80 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence 57899999999999999999999999999999876899999999999999999999999999999999876556542221
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
..+.+++.++...++.|++||+++|++++++++....++|||++||++++.++.++++.|++.++++++++...+.++
T Consensus 81 --~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~ 158 (380)
T PRK05293 81 --GGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE 158 (380)
T ss_pred --CCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhh
Confidence 224555333332445688999999999999986433468999999999999999999999988888888887665556
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~ 323 (520)
+..||++.+|++++|.+|.|||..+. .++.++|+|+|++++|.+++++... ...+|
T Consensus 159 ~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 217 (380)
T PRK05293 159 ASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDF 217 (380)
T ss_pred ccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhh
Confidence 78899999988899999999986432 2488999999999999777764322 23456
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccccceEE
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVI 402 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~I 402 (520)
.+|+++.+++.+.+++++.++++|.||||+++|+++++.++... +...++++...+++.+.+.+|+.+. ++.|.+++|
T Consensus 218 ~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~I 296 (380)
T PRK05293 218 GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPE-NPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLV 296 (380)
T ss_pred HHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCC-chhhhcCCCCceecCCcCCCCCEECCCCEEecCEE
Confidence 68999999987789999999999999999999999999888765 4456778888888888888888885 677889999
Q ss_pred CCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcE
Q 010006 403 GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 482 (520)
Q Consensus 403 g~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~ 482 (520)
|++|.|++ .+.+|+||++|+||++|+|++|+++++ +.||+++.|.+|+|+++++||+++.
T Consensus 297 g~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 297 VEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred CCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCCE
Confidence 99999985 567999999999999999999999987 5899999999999999999999999
Q ss_pred EecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 483 IVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 483 i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.+... ++++||+++.|+++++|
T Consensus 357 i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 357 IGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred EcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 976322 13567777777777765
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.9e-54 Score=452.20 Aligned_cols=385 Identities=37% Similarity=0.657 Sum_probs=311.4
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
+|++|+|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+. |.+..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~--~~~~~- 78 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQT--WRLSG- 78 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhC--cCccc-
Confidence 468899999999999999999999999999999877999999999999999999999999999999999854 32211
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
....++.... .+...++.|++||+++++++++++.+...++||+++||++++.++.++++.|+++++++|+++...+.+
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~ 157 (407)
T PRK00844 79 LLGNYITPVP-AQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE 157 (407)
T ss_pred cCCCeEEECC-cccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH
Confidence 1112222211 122123457799999999999999653335799999999999999999999999999999888776555
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~ 322 (520)
++..||++.+|++|+|..|.|||....... .....+++++|+|+|++++|.+++++... ...+
T Consensus 158 ~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~ 223 (407)
T PRK00844 158 EASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADEDSSHD 223 (407)
T ss_pred HcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCccccc
Confidence 678899999998899999999987542100 00123589999999999998666664221 3345
Q ss_pred ccccchHhhhhCCceEEEEEe------------cceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCc
Q 010006 323 FGSEVIPGATSIGMRVQAYLY------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~------------~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
+..|+++.++++ .++++|.+ ++||.||+++++|+++|+.++... +...+.++..++++..+..||+
T Consensus 224 ~~~dii~~l~~~-~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~ 301 (407)
T PRK00844 224 MGGDIIPRLVER-GRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVH-PVFNLYNREWPIYTSSPNLPPA 301 (407)
T ss_pred chhhHHHHHhcc-CeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCC-CccccCCCCCcccccCCCCCCc
Confidence 678999999985 58999976 599999999999999999999765 4455667777888887788888
Q ss_pred eeecc-----cccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCE
Q 010006 391 KMLDA-----DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH 465 (520)
Q Consensus 391 ~i~~~-----~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 465 (520)
.+.+. .+.+++||++|.|+++.|.+|+||++|+|+++|+|++++++++ +.||++|.
T Consensus 302 ~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~~ 362 (407)
T PRK00844 302 KFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGAV 362 (407)
T ss_pred eEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCCE
Confidence 87532 3578999999999878899999999999999999999999886 58999999
Q ss_pred EcceEECCCCEECCCcEEecCCCcCCcccccCCeEEc-cCeEEEcCCCEe
Q 010006 466 IKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK-SGIVTIIKDALI 514 (520)
Q Consensus 466 i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~-~~~v~Ig~~~~i 514 (520)
|.+|+|+++++||+++++.+. . +.+ ++++.|. +|+++|++|++|
T Consensus 363 i~~~ii~~~~~i~~~~~i~~~-~--~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 363 VRRAILDKNVVVPPGATIGVD-L--EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred EEeeEECCCCEECCCCEECCC-c--ccc--ccceEeccceEEEeCCCCCC
Confidence 999999999999999999763 1 222 3466777 778889888764
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6e-54 Score=453.99 Aligned_cols=390 Identities=37% Similarity=0.650 Sum_probs=317.0
Q ss_pred ccccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCC
Q 010006 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (520)
Q Consensus 85 ~~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (520)
.+|++++|||||||.||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+. .
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~--~ 88 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFF--R 88 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccc--c
Confidence 44578999999999999999999999999999999844999999999999999999999999999999998753321 0
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.....++.++...+....+.|++||++++++++++++...+++|||++||++++.++.++++.|+++++++|+++.+.+.
T Consensus 89 ~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~ 168 (425)
T PRK00725 89 EELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168 (425)
T ss_pred cCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecch
Confidence 01123455555444322445779999999999999975445789999999999999999999999999999999887765
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhC---CCCC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~ 321 (520)
+++..||++.+|++++|.+|.|||..+.. +. .....+++++|+|+|++++|.+++++.. ....
T Consensus 169 ~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~ 234 (425)
T PRK00725 169 EEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSH 234 (425)
T ss_pred hhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccc
Confidence 66789999999988999999999864321 00 0011458999999999999876775432 1235
Q ss_pred CccccchHhhhhCCceEEEEEec-----------ceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCc
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~-----------g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
+|..|+++.+++ ..++++|.++ +||.||+|+++|+++|+.++... +...+++...++++.....|++
T Consensus 235 ~~~~dii~~l~~-~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-~~~~~~~~~~~i~t~~~~~~~~ 312 (425)
T PRK00725 235 DFGKDIIPKIVE-EGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-PELDLYDRNWPIWTYQEQLPPA 312 (425)
T ss_pred hhhHHHHHHHhc-cCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-chhhccCCCCccccCCCCCCCC
Confidence 677899999998 5689999986 59999999999999999998754 5556667777888888888888
Q ss_pred eeec------ccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCC
Q 010006 391 KMLD------ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 464 (520)
Q Consensus 391 ~i~~------~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 464 (520)
.+.. +.+.+++||+||+|.+|.|.+|+||++|.||++|.|++|++|++ +.||+++
T Consensus 313 ~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~ 373 (425)
T PRK00725 313 KFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSC 373 (425)
T ss_pred eEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCC
Confidence 7742 34678999999999559999999999999999999999999987 6899999
Q ss_pred EEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeC
Q 010006 465 HIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 465 ~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~ 515 (520)
.|++|+|+++|+|+++++|... ...+..+ ..++..|+|+|++++.+-
T Consensus 374 ~i~~~ii~~~~~i~~~~~i~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 374 RLRRCVIDRGCVIPEGMVIGED-PEEDAKR---FRRSEEGIVLVTREMLDK 420 (425)
T ss_pred EEeeEEECCCCEECCCCEECCC-CCCCCce---eEecCccEEEECCCcccc
Confidence 9999999999999999999543 3333333 455667889999997654
No 8
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-50 Score=413.66 Aligned_cols=353 Identities=28% Similarity=0.453 Sum_probs=286.6
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+.+++.+.+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~------ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGV------ 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCC------
Confidence 38999999999999999999999999999986 99999999999999999999999999999999999643321
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
. +... .+ .+ .+||+++|+++.+++.. ++|++++||.+++.|+.+++++|+++.+.+++........ .
T Consensus 74 ~-I~y~--~e--~~---~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~--~ 140 (358)
T COG1208 74 R-ITYV--VE--KE---PLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDP--S 140 (358)
T ss_pred c-eEEE--ec--CC---cCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCC--C
Confidence 1 2222 11 11 38999999999998863 7999999999999999999999999877888888776543 7
Q ss_pred ceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccc
Q 010006 249 AFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (520)
Q Consensus 249 ~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~di 327 (520)
.||++..+++ ++|.+|.|||.... ..+++.++|+|+|++++|+ .+. .....+|..++
T Consensus 141 ~~Gvv~~~~~~~~v~~f~ekp~~~~-------------------~~~~~in~Giyi~~~~v~~-~i~--~~~~~~~~~~~ 198 (358)
T COG1208 141 EFGVVETDDGDGRVVEFREKPGPEE-------------------PPSNLINAGIYIFDPEVFD-YIE--KGERFDFEEEL 198 (358)
T ss_pred cCceEEecCCCceEEEEEecCCCCC-------------------CCCceEEeEEEEECHHHhh-hcc--cCCcccchhhH
Confidence 8999998855 59999999995311 1146999999999999998 333 23456677789
Q ss_pred hHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCC-cCCCceeecccccceEECCCc
Q 010006 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR-YLPPSKMLDADVTDSVIGEGC 406 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~i~~~~Ig~g~ 406 (520)
++.+++++..++++.++++|.||++|++|.+++..++..... . +..+...... ... +.+ +++++|+++|
T Consensus 199 ~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~-~----~~~~~~~~~~~~~~-~~i----~gp~~ig~~~ 268 (358)
T COG1208 199 LPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGK-S----PLGPIEEPVVIIRS-AYI----IGPVVIGPGA 268 (358)
T ss_pred HHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccc-c----cccccccccccccc-ceE----eCCEEECCCC
Confidence 999999666699999999999999999999999988864311 1 1111111100 111 222 2677888888
Q ss_pred EEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEe
Q 010006 407 VIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIV 484 (520)
Q Consensus 407 ~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 484 (520)
.|+. +.|. +|+||++|.||+++.|.+|++|++ +.|+++++|.++||+.||.||+++ .
T Consensus 269 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~-~- 327 (358)
T COG1208 269 KIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL-I- 327 (358)
T ss_pred EECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce-e-
Confidence 8887 7777 799999999999999999999997 589999999999999999999933 2
Q ss_pred cCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 485 NSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 485 ~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++ +.++.++.|..+ +++++++.+++++++
T Consensus 328 ----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 328 ----IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred ----ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 778 888889999999 999999999888764
No 9
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=6.3e-49 Score=408.26 Aligned_cols=356 Identities=48% Similarity=0.857 Sum_probs=280.7
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.||||+|||+++||||+|++|++|||+|++++|.++|+++|+|+++++.+++.+|+.+.+.. ... ....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~--~~~-~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDF--DGF-IDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCc--cCc-cCCCE
Confidence 699999999999999999999999999865899999999999999999999999999999999864322 110 11235
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
+++...+...++.|.+||+++++.+++++++...++|++++||++++.++.++++.|++.++++++++.+.+.+++..||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 55544443345667799999999999988654447899999999999999999999988888888888876655678899
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCccccch
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVI 328 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~~~dil 328 (520)
++.+|++++|..|.|||..+..... ....+++++|+|+|++++|.+++++... ...++..+++
T Consensus 158 ~v~~d~~~~v~~~~ekp~~~~~~~~--------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l 223 (361)
T TIGR02091 158 VMQVDEDGRIVDFEEKPANPPSIPG--------------MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDII 223 (361)
T ss_pred EEEECCCCCEEEEEECCCCcccccc--------------cccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHH
Confidence 9999988999999999854321100 0112488999999999998767664321 2345667999
Q ss_pred HhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCC-CcCCCceee-cccccceEECCCc
Q 010006 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQP-RYLPPSKML-DADVTDSVIGEGC 406 (520)
Q Consensus 329 ~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~-~~~i~~~~Ig~g~ 406 (520)
+.+++ ..++++|.++++|.||+|+++|+++++.++... +.........++++.. .+.|++.+. ++.+.+++||++|
T Consensus 224 ~~l~~-~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~ 301 (361)
T TIGR02091 224 PRALE-EGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVV-PPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGC 301 (361)
T ss_pred HHHhh-cCceEEEeeCCEEEECCCHHHHHHHHHHHhCCC-chhhccccCCceecCCCCCCCceEecCCCEEECCEECCCC
Confidence 99998 569999999999999999999999999998765 3233334444444333 333444443 3356789999999
Q ss_pred EEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 407 VIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 407 ~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.|+++.|.+|+||++|+|+++|+|.+|+++++ +.||+++.|++|+|+++++||.+++|.|
T Consensus 302 ~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 302 IISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred EECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 99876778999999999999999999888876 5799999999999999999999988864
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=7.2e-49 Score=408.98 Aligned_cols=350 Identities=26% Similarity=0.465 Sum_probs=275.0
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh-HHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 167 (520)
.|+|||||||+|+||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++|..+ ++.+||.+...|++....
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~- 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR- 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc-
Confidence 589999999999999999999999999999866999999999999999999999999887 999999875555432111
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
......+ .+ +.+.|.+|+++++..++++++....++|||++||++++.||.+++++|+++++++|+++.+++.+++
T Consensus 81 ~~~~~~~--~~--e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~ 156 (369)
T TIGR02092 81 DGLFVFP--YN--DRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADA 156 (369)
T ss_pred CcEEEEe--cc--CCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHc
Confidence 1111111 22 1222335777789889888853234789999999999999999999999999999999988764456
Q ss_pred cceE-EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCccc
Q 010006 248 TAFG-LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDFGS 325 (520)
Q Consensus 248 ~~~g-~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~~~ 325 (520)
..|+ ++..|++++|..+.+++.... ....++|+|+|++++|.+++++..+. ..++..
T Consensus 157 ~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 215 (369)
T TIGR02092 157 SEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGKLTSLE 215 (369)
T ss_pred cccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCccccHH
Confidence 6774 566777788887754332211 13568999999999887677654332 224456
Q ss_pred cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccccceEECC
Q 010006 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGE 404 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~ 404 (520)
++++.+++ +.+++++.++++|.||+|+++|++|++.++........+.....++++...+.+|+.+. ++.|++|+||+
T Consensus 216 d~i~~~~~-~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~ 294 (369)
T TIGR02092 216 ELIRENLK-ELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVAN 294 (369)
T ss_pred HHHHHHhc-cCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcC
Confidence 88898887 67999999999999999999999999988876522111212233555555566888775 67788999999
Q ss_pred CcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEe
Q 010006 405 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIV 484 (520)
Q Consensus 405 g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 484 (520)
||.|+. .|.+|+||++|+|+++|.|.+++++++ +.|++++.+++|+|+++++||+++.+.
T Consensus 295 ~~~i~~-~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 295 GCIIEG-KVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred CCEEee-EEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCCCEeC
Confidence 999974 688999999999999999999999987 589999999999999999999999996
Q ss_pred c
Q 010006 485 N 485 (520)
Q Consensus 485 ~ 485 (520)
+
T Consensus 355 ~ 355 (369)
T TIGR02092 355 G 355 (369)
T ss_pred C
Confidence 5
No 11
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.1e-46 Score=372.90 Aligned_cols=384 Identities=25% Similarity=0.303 Sum_probs=314.0
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
++.+||||||+||||. ..+||-|-|++|+ ||++|+|+.+...+.+++.+|++|..+++++.+.+.. ..
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~--------~v 69 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD--------DV 69 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc--------Cc
Confidence 5799999999999999 5799999999997 9999999999999999999999999999999887621 11
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
.+ +++..| +||++|+.+++++|.+....++||++||+ |+..+ |..|++.|...++.+++++...+ +
T Consensus 70 ~~--v~Q~eq--------lGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~--d 137 (460)
T COG1207 70 EF--VLQEEQ--------LGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD--D 137 (460)
T ss_pred eE--EEeccc--------CChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--C
Confidence 12 333322 99999999999999543456899999999 77655 88899999999999999998865 5
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhh-hhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCC
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQ-LKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~ 322 (520)
|+.||.+..+++|+|..|.|..+... .+++ ...++|+|+|+.+.|.++|..--. ....
T Consensus 138 P~GYGRIvr~~~g~V~~IVE~KDA~~eek~I------------------~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY 199 (460)
T COG1207 138 PTGYGRIVRDGNGEVTAIVEEKDASEEEKQI------------------KEINTGIYAFDGAALLRALPKLSNNNAQGEY 199 (460)
T ss_pred CCCcceEEEcCCCcEEEEEEcCCCCHHHhcC------------------cEEeeeEEEEcHHHHHHHHHHhccccccCcE
Confidence 89999999998899999998665433 2222 378999999999888888774322 2234
Q ss_pred ccccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC------------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~------------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
|.+|++..+.+++.++.++..+++ ..-+++-.++.+++..+..+. .|...+++.+..+..++.|.|
T Consensus 200 YLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p 279 (460)
T COG1207 200 YLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEP 279 (460)
T ss_pred eHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEec
Confidence 568888888888999999999875 567888888877766553221 244455666667777777777
Q ss_pred Cceee-------------cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECC-----ccccccccccc
Q 010006 389 PSKML-------------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA-----DYYETDADRRF 449 (520)
Q Consensus 389 ~~~i~-------------~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~-----~~~~~~~~~~~ 449 (520)
++.+. +|.|.||.|+++|.|.. +.|.+|.||++|.||++++|++...+++ .|+|+ +++
T Consensus 280 ~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv---K~a 356 (460)
T COG1207 280 NVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV---KKA 356 (460)
T ss_pred CcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE---ecc
Confidence 66554 45567788888888888 8888888999999999888888776665 36666 999
Q ss_pred cccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCccc-ccCCeEEccC-----eEEEcCCCEeCCCccC
Q 010006 450 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR-ETDGYFIKSG-----IVTIIKDALIPSGTII 520 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~-~~~~~~I~~~-----~v~Ig~~~~i~~gtvi 520 (520)
.||+|. ..++-++|.++.||+++.||++++..|++|..+... ||++++||++ +|+||+++.|++||+|
T Consensus 357 ~ig~gs---Ka~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 357 TIGKGS---KAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cccCCc---cccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 999999 899999999999999999999999999999988775 9999999999 5999999999999986
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=1.3e-44 Score=374.81 Aligned_cols=294 Identities=24% Similarity=0.366 Sum_probs=217.2
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+|||||||.|+||+|||..+||||+|++|+ |||+|++++|.++|+++|+|++++ +.+++.+|+.+...|++ .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~------~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFGA------K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccccCc------e
Confidence 589999999999999999999999999987 999999999999999999999999 88999999987444421 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 249 (520)
+.++ .+ .+..|++++++.++.++++ ++|++++||++++.++.++++.|+++++++++++.+.+ ++..
T Consensus 74 -~~~~--~~-----~~~~G~~~al~~a~~~l~~---~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~ 140 (353)
T TIGR01208 74 -ITYI--VQ-----GEPLGLAHAVYTARDFLGD---DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTA 140 (353)
T ss_pred -EEEE--EC-----CCCCCHHHHHHHHHHhcCC---CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--Chhh
Confidence 2222 11 1248999999999988853 68999999999999999999999999999998888754 3567
Q ss_pred eEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC--CCCccccc
Q 010006 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (520)
Q Consensus 250 ~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~~~~~~di 327 (520)
|+++.+|++++|.+|.|||.... +.+.++|+|+|++.+++ .+++..+. ...+..++
T Consensus 141 ~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~ 198 (353)
T TIGR01208 141 FGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDA 198 (353)
T ss_pred CeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHH
Confidence 99888876679999999987432 24789999999997776 55433331 22234789
Q ss_pred hHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccccceEECCCc
Q 010006 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGC 406 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~ 406 (520)
++.+++.+.++++|.++++|.||+|+++|+++++.++..... .+ . .+.+.+.+.+++.+. ++.|.+++|+.+|
T Consensus 199 l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~--~~-~---~i~~~~~i~~~~~i~~~~~i~~~~i~~~~ 272 (353)
T TIGR01208 199 IQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER--EV-Q---GVDDESKIRGRVVVGEGAKIVNSVIRGPA 272 (353)
T ss_pred HHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc--cc-C---CcCCCCEEcCCEEECCCCEEeCCEEECCc
Confidence 999998788999999999999999999999999999875311 11 1 133333333433332 2333334444444
Q ss_pred EEee-eEEeeeEECCCCEECCCCEEcc
Q 010006 407 VIKN-CKIHHSVVGLRSCISEGAIIED 432 (520)
Q Consensus 407 ~I~~-~~i~~s~Ig~~~~Ig~~~~I~~ 432 (520)
.|++ |.|.+++|+.+|.||++|+|++
T Consensus 273 ~Ig~~~~I~~~~i~~~~~Ig~~~~i~~ 299 (353)
T TIGR01208 273 VIGEDCIIENSYIGPYTSIGEGVVIRD 299 (353)
T ss_pred EECCCCEEcCcEECCCCEECCCCEEee
Confidence 4443 4444444444444444444443
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-43 Score=378.37 Aligned_cols=392 Identities=21% Similarity=0.288 Sum_probs=282.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|++++++++++..+++.+++.+...
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~~------- 69 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDGD------- 69 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCCc-------
Confidence 5679999999999999984 689999999987 99999999999999999999999999999988865211
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-e-ccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-L-YRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
+.++. + . +.+|++++++.++.++++ ..++||+++||+ + .+.++.++++.|.+.+++++++..+..
T Consensus 70 ----i~~~~--~--~---~~~Gt~~al~~a~~~l~~-~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~- 136 (459)
T PRK14355 70 ----VSFAL--Q--E---EQLGTGHAVACAAPALDG-FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE- 136 (459)
T ss_pred ----eEEEe--c--C---CCCCHHHHHHHHHHHhhc-cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC-
Confidence 22221 1 1 137999999999998863 246899999998 3 457799999999888888888776653
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~ 321 (520)
++..|+.+.+|++++|..+.|||...... ..++++++|+|+|++++|.++++...+. ..
T Consensus 137 -~~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e 198 (459)
T PRK14355 137 -NPFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE 198 (459)
T ss_pred -CCCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCc
Confidence 35679998898889999999887432110 0135889999999999876666543321 22
Q ss_pred CccccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCCC-----CCCccccCCC-ccccCCCcCCCceee
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKPI-----PDFSFYDRSA-PIYTQPRYLPPSKML 393 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~~-----~~~~~~~~~~-~i~~~~~~~~~~~i~ 393 (520)
.+.+|+++.+++++.++++|.++++ |.+++|+++|+++++.++.... ....++++.+ .+...+.+.+++.+.
T Consensus 199 ~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~ 278 (459)
T PRK14355 199 YYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIY 278 (459)
T ss_pred eeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEe
Confidence 3458999999997889999999987 9999999999999775543210 1123445543 344445555555554
Q ss_pred -cccc-cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccc--cccccccCCCc--------ceee
Q 010006 394 -DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA--DRRFLAAKGSV--------PIGI 460 (520)
Q Consensus 394 -~~~i-~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~--~~~~~~~~~~~--------~~~I 460 (520)
++.| .+++||++|.|+. |.|.+|+||++|.|+.+|+|.++++.++.+....+ ..++.+++++. .+.|
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~i 358 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVM 358 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEE
Confidence 3444 5688999999998 88889999999999999999888777665432111 12344444441 1123
Q ss_pred CCCCE------EcceEECCCCEECCCcEEecCCCcCC-cccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 461 GKNSH------IKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 461 g~~~~------i~~~ii~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
|+++. +.+++|+++|.||.++++.|.++... ...+|++++|+.+. ++||++++|++||+|
T Consensus 359 g~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 359 GEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 33333 34578888888888888766544432 23455555555441 788999999988875
No 14
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-43 Score=379.81 Aligned_cols=389 Identities=19% Similarity=0.240 Sum_probs=277.7
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
..+.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+++.+...
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~~-------- 70 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELAP-------- 70 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccCC--------
Confidence 457899999999999996 589999999987 99999999999999999999999988888888765210
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
. +.++. +++..|++++++.++.++....+++||+++||+ ++ ..++.++++.|++.+++++++..+..
T Consensus 71 -~-~~~~~-------~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~-- 139 (482)
T PRK14352 71 -E-VDIAV-------QDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD-- 139 (482)
T ss_pred -c-cEEEe-------CCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC--
Confidence 1 22221 123489999999999888543346899999999 44 46699999999888887777776644
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~ 322 (520)
++..|+.+..|++++|.+|.|||....... ...++++|+|+|++++|.+++++..+. ...
T Consensus 140 ~p~~yg~~~~~~~g~V~~~~EKp~~~~~~~-----------------~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 140 DPTGYGRILRDQDGEVTAIVEQKDATPSQR-----------------AIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCCHHHh-----------------hcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 467899888888899999999988533210 123689999999999998776643332 223
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHH------HHhhhhcccCC--------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAF------YNANLGITKKP--------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy------~~An~~~l~~~--------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
+..|+++.+++.+.++++|.++++|.|+++++.| ..++..++... .|...++++.+.|.+.+.+.|
T Consensus 203 ~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~ 282 (482)
T PRK14352 203 YLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHP 282 (482)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeC
Confidence 4589999999978899999999999999998877 44444333221 122334555556666666666
Q ss_pred Cceee-------------cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECC-cccccccc-ccccccC
Q 010006 389 PSKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA-DYYETDAD-RRFLAAK 453 (520)
Q Consensus 389 ~~~i~-------------~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~-~~~~~~~~-~~~~~~~ 453 (520)
++.+. ++.|.+++||++|.|.++.+.+++||.++.||++|.|.+.++++. ......++ .++.+++
T Consensus 283 ~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~ 362 (482)
T PRK14352 283 GTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGR 362 (482)
T ss_pred CcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECC
Confidence 66554 122333444444444333344566666666666666665544443 11111111 4556666
Q ss_pred CCcceeeCCCCEEcceEECCCCEECCCcEEecC-------CCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 454 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS-------DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 454 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~-------~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++ .|++.+.+.+++||++|.||.++++.++ ..+++.+++|.++.|..+ ++||++++|++|++|
T Consensus 363 ~~---~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 363 GT---KVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred Cc---EEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 66 6777778888999999999999999875 445666666666666677 899999999999875
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.4e-42 Score=370.93 Aligned_cols=385 Identities=18% Similarity=0.222 Sum_probs=264.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++|+|||||||+|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.. . +
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~--------~ 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-S--------G 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-C--------C
Confidence 469999999999999996 489999999987 99999999999999999999999988888888753 1 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+.++. + .+..|++++++.++.++.. ..++|++++||+ ++ ..++.++++.|+++++++++++.+.+
T Consensus 73 ---i~~v~--~-----~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~-- 139 (481)
T PRK14358 73 ---VAFAR--Q-----EQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP-- 139 (481)
T ss_pred ---cEEec--C-----CCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--
Confidence 23322 1 2348999999999988753 235799999998 44 56799999999998888988887765
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhC---CCCCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~~ 322 (520)
++..||.+.+|++++|.+|.|||...... ....++++|+|+|++++++ +++.-. +....
T Consensus 140 ~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~~ge~ 201 (481)
T PRK14358 140 DATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNKAGEY 201 (481)
T ss_pred CCCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCccCCeE
Confidence 35679999999889999999998743211 0023689999999976532 333211 11223
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhh-cccCC-------------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG-ITKKP-------------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~-~l~~~-------------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
+.+|+++.+++.+.++++|.++++|..++...+|+.+++. ++... .|....+++...|...+.+.|
T Consensus 202 ~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~ 281 (481)
T PRK14358 202 YLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEP 281 (481)
T ss_pred EHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeC
Confidence 4579999999877899999999998888877666555543 22111 011111233333334444444
Q ss_pred CceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccc--ccccccCCCc---------
Q 010006 389 PSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRFLAAKGSV--------- 456 (520)
Q Consensus 389 ~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~--~~~~~~~~~~--------- 456 (520)
++.+. .++.||++|.|+. |.|++|+||++|.|++++.|.++++.++++....+. ..+.+|+++.
T Consensus 282 ~~~I~----~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 282 GVLLR----GQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred CcEEe----CCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 44433 3455677777766 666677777777777777776665555544433222 2344444441
Q ss_pred -----ceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCc-ccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 457 -----PIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 457 -----~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
.+.||+.+.+.+++||+||.||.++++.|.++.... ..+|++++|+.+. ++||++++|++|++|
T Consensus 358 ~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 358 ARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred ceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 003333444567889999999999999886544332 2455555555552 679999999988864
No 16
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.3e-42 Score=367.76 Aligned_cols=383 Identities=19% Similarity=0.226 Sum_probs=258.9
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|+|||||||.|+||++ .+||+|+|++|+ |||+|+++.|..+|++++++++++..+++.+++...
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE--------- 69 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC---------
Confidence 4679999999999999983 689999999997 999999999999999999999999888888887541
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.+.++. + . +..|++++++.++.++++ .++||+++||+ +.+.++.++++.|.+.+ +++++.+.+
T Consensus 70 ---~~~~i~--~--~---~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~- 134 (456)
T PRK09451 70 ---PLNWVL--Q--A---EQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD- 134 (456)
T ss_pred ---CcEEEE--C--C---CCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC-
Confidence 022221 1 1 137999999999988752 46899999998 44577999998886543 445555543
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~ 321 (520)
++..||++.. ++++|.+|.|||...... ....++++|+|+|+++.|.+++++..+. ..
T Consensus 135 -~~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e 195 (456)
T PRK09451 135 -NPTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGE 195 (456)
T ss_pred -CCCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCc
Confidence 4567998754 578999999998642211 0124789999999999998777653331 33
Q ss_pred CccccchHhhhhCCceEEEEE------ecce--EEeCCCHHHHHHhhhh--cccC----CCCCCc------------ccc
Q 010006 322 DFGSEVIPGATSIGMRVQAYL------YDGY--WEDIGTIEAFYNANLG--ITKK----PIPDFS------------FYD 375 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~------~~g~--w~dI~t~~dy~~An~~--~l~~----~~~~~~------------~~~ 375 (520)
.+..|+++.+++++.++++|. +.|| |.|++++++|++++.. ++.. ..|... .+.
T Consensus 196 ~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~ 275 (456)
T PRK09451 196 YYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEID 275 (456)
T ss_pred eeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEc
Confidence 456899999999788999996 4566 7889999999998742 2111 011111 122
Q ss_pred CCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcc-cEEECCcccccccc-ccccc
Q 010006 376 RSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLA 451 (520)
Q Consensus 376 ~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~-~~~~~ 451 (520)
+.+.|...+.+.+++.+. ++.|.+++|+++|.|+. |.|.+|+||++|.|+++|.|.. +.+.+++.....++ +++.+
T Consensus 276 ~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i 355 (456)
T PRK09451 276 TNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARL 355 (456)
T ss_pred CCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceee
Confidence 222222222333333332 34445566666666665 6565666666666666655542 22222221111111 35556
Q ss_pred cCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 452 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 452 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|+|+ .|++.+.+.+|.||++|.||+++++.+.++ +++.+++|.++.|.++ ++||++++|++|++|
T Consensus 356 ~~~~---~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~gs~v 427 (456)
T PRK09451 356 GKGS---KAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIGAGTTV 427 (456)
T ss_pred CCCC---ccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCC-cEECCCCEECCCCEE
Confidence 6666 566666777889999999999999887654 3444444444444555 789999999999875
No 17
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.7e-41 Score=360.63 Aligned_cols=383 Identities=19% Similarity=0.215 Sum_probs=277.6
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|+++.|||||||.|+||++ ..||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+++.+..
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~-------- 70 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA-------- 70 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC--------
Confidence 5779999999999999984 589999999987 9999999999999999999999999888888875511
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.. +.++. + ++..|++++++.++.+++. ..++|++++||+ +++. ++..+++. .+.+++++++..+..
T Consensus 71 -~~-~~~~~--~-----~~~~G~~~sl~~a~~~l~~-~~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~~~~~- 138 (446)
T PRK14353 71 -PD-AEIFV--Q-----KERLGTAHAVLAAREALAG-GYGDVLVLYGDTPLITAETLARLRER-LADGADVVVLGFRAA- 138 (446)
T ss_pred -CC-ceEEE--c-----CCCCCcHHHHHHHHHHHhc-cCCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEEEEeC-
Confidence 01 11111 1 1237999999999988752 246899999998 5554 58888874 455677777776643
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (520)
++..|+.+.. ++++|..+.|||...... ....++++|+|+|+++.|.+++++... ...
T Consensus 139 -~~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~ 199 (446)
T PRK14353 139 -DPTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDNAKGE 199 (446)
T ss_pred -CCCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCc
Confidence 3567888777 568999999998643211 012478999999999877667664322 122
Q ss_pred CccccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhcccC------------CCCCCccccCCCccccCCCcCC
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK------------PIPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~~------------~~~~~~~~~~~~~i~~~~~~~~ 388 (520)
.+..+.++.+++.+.+++++..+ ++|.+|+||+||..++..+... ..|...++.+.+.|..++.+.|
T Consensus 200 ~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~ 279 (446)
T PRK14353 200 YYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEP 279 (446)
T ss_pred EeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECC
Confidence 34578899998878899999997 5799999999999888543211 1122234455566666666666
Q ss_pred CceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEc-ccEEECCcccccccc-ccccccCCCcceeeCCCCE
Q 010006 389 PSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSH 465 (520)
Q Consensus 389 ~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~ 465 (520)
++.+. .++.||++|.|+. +.|.+++||++|+||++|.|. ++++.+++.....+. .++.+++++ .|++++.
T Consensus 280 ~~~I~----~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~---~i~~~~~ 352 (446)
T PRK14353 280 NVVFG----PGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGA---KVNHLTY 352 (446)
T ss_pred CCEEC----CCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCC---EECCeeE
Confidence 66654 4677888888887 777788888888888888887 444444333322222 345555555 6777777
Q ss_pred EcceEECCCCEECCCcEEecC-------CCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 466 IKRAIIDKNARIGDNVKIVNS-------DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 466 i~~~ii~~~~~Ig~~~~i~~~-------~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.+++|+++|.||.++++.+. ..+++.+++|.++.|.++ ++||++++|++|++|
T Consensus 353 i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 353 IGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred EcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 888999999999999988553 345566666666666666 889999999999875
No 18
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=1.1e-41 Score=364.01 Aligned_cols=381 Identities=20% Similarity=0.225 Sum_probs=253.7
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|+++++|+++++.+++.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~~---------- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-RD---------- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-CC----------
Confidence 6899999999999996 689999999997 99999999999999999999999998888888765 11
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.++.. .. ..|++++++.++.++++ .++|++++||+ ++ ..++.++++.|.+. .+++++.+.+ ++
T Consensus 66 -i~~~~~----~~---~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~--~~ 131 (451)
T TIGR01173 66 -VNWVLQ----AE---QLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP--DP 131 (451)
T ss_pred -cEEEEc----CC---CCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC--CC
Confidence 222211 11 26899999999988853 36899999998 44 45699999988664 3666666653 45
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCCcc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~~~ 324 (520)
..|+.+..|++++|..|.|||...... ...+.+++|+|+|++++|.+++++..+. ...+.
T Consensus 132 ~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~ 194 (451)
T TIGR01173 132 TGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL 194 (451)
T ss_pred CCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH
Confidence 668888888889999999987643211 0124789999999999977666643321 22335
Q ss_pred ccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC------------CCCCccccCCCccccCCCcCCCc
Q 010006 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~------------~~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
.++++.+++++.++++|.++++ |++++|+++|.+++..+.... .+....+.+...|..++.+.|.+
T Consensus 195 ~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~ 274 (451)
T TIGR01173 195 TDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNV 274 (451)
T ss_pred HHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCe
Confidence 7999999987889999999987 999999999988755432210 01011122222333333333333
Q ss_pred eee-------------cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEEC-Ccccccccc-ccccccCC
Q 010006 391 KML-------------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-RRFLAAKG 454 (520)
Q Consensus 391 ~i~-------------~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~-~~~~~~~~~-~~~~~~~~ 454 (520)
.+. ++.+.+++|+++|.|+. |.|.+++||++|.||++|+|.+..+++ ++.....++ .++.+|+|
T Consensus 275 ~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~ 354 (451)
T TIGR01173 275 ILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG 354 (451)
T ss_pred EEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC
Confidence 332 22334445555555554 555555555555555555554322222 221111111 23444444
Q ss_pred CcceeeCCCCEEcceEECCCCEECCCcEEecCCCc-------CCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 455 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV-------QEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 455 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v-------~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+ .|++.+.+.+|.|++++.||+++++.+.++. ++.+++|.++.|.++ ++||++++|++|++|
T Consensus 355 ~---~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 355 S---KAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV 423 (451)
T ss_pred c---EecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence 4 4555555666888888888888888775443 344444444444445 789999999999875
No 19
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.3e-41 Score=356.75 Aligned_cols=375 Identities=17% Similarity=0.212 Sum_probs=276.1
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|+++|||||||.||||++ .+||+|+|++|+ |||+|+++.|..+ +++++|+++++.+++.+++.+.+.
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~-------- 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFP-------- 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCC--------
Confidence 358899999999999996 799999999987 9999999999987 789999999999999999876211
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
.+.++.... ....||+++++.+.. ..++||+++||. +... +.++.+.+.++++++.+.+.++
T Consensus 68 --~v~~~~~~~-----~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~~~---~~l~~l~~~~~~~~v~~~~~~~-- 130 (430)
T PRK14359 68 --GVIFHTQDL-----ENYPGTGGALMGIEP-----KHERVLILNGDMPLVEK---DELEKLLENDADIVMSVFHLAD-- 130 (430)
T ss_pred --ceEEEEecC-----ccCCCcHHHHhhccc-----CCCeEEEEECCccCCCH---HHHHHHHhCCCCEEEEEEEcCC--
Confidence 133332211 113789999977321 247899999998 4332 3344455556778887777543
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~ 323 (520)
+..|+.+..| +|+|..+.|++...... ...++.++|+|+|++++|.++++.... ....+
T Consensus 131 ~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~ 192 (430)
T PRK14359 131 PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYY 192 (430)
T ss_pred CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCcee
Confidence 5578887775 68999999887542110 012478999999999999876653221 12334
Q ss_pred cccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhcccCCC------------CCCccccCCCccccCCCcCCCc
Q 010006 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPI------------PDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~~~~------------~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
.+|+++.+++.+.+++++.++ ++|.||+|++||+.++..+..+.. +...++.+.+.+...+.+.+++
T Consensus 193 l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~ 272 (430)
T PRK14359 193 LTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGV 272 (430)
T ss_pred hhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCC
Confidence 578999999878999999997 589999999999999865543210 1122344555555555566666
Q ss_pred eee-cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcce
Q 010006 391 KML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRA 469 (520)
Q Consensus 391 ~i~-~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 469 (520)
.+. ++.+.+++|+++|.|+++.|.+|+||+++.|+++|+|+++.+.++.. . +++++ +++ .||+++.|.+|
T Consensus 273 ~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~--i---~~~~~-~~~---~i~~~~~i~d~ 343 (430)
T PRK14359 273 RILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVE--T---KNAKL-NGV---KAGHLSYLGDC 343 (430)
T ss_pred EECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEE--E---cccEe-ccc---cccccccccCC
Confidence 664 55567899999999988778899999999999999998877766432 1 34455 555 89999999999
Q ss_pred EECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 470 IIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 470 ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+||++|.||.++++.+.++ +++.+.+|.++.|..+ ++||++++|++|++|
T Consensus 344 ~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 400 (430)
T PRK14359 344 EIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAP-VNIEDNVLIAAGSTV 400 (430)
T ss_pred EECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 9999999999999987644 4444445555555555 889999999999875
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.7e-41 Score=358.17 Aligned_cols=387 Identities=18% Similarity=0.204 Sum_probs=255.4
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
...+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.+.
T Consensus 3 ~~~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK14356 3 ASTTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE--------- 69 (456)
T ss_pred CcceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc---------
Confidence 346899999999999997 4799999999987 999999999999999999999999888887766431
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
. ++++. + ++..|++++++.++++++....++|++++||+ +++ .++..+++.|+ +++++++..+.+
T Consensus 70 ~---~~~v~--~-----~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~- 136 (456)
T PRK14356 70 D---ARFVL--Q-----EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP- 136 (456)
T ss_pred C---ceEEE--c-----CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC-
Confidence 1 22221 1 11379999999999988754457899999999 554 56999998875 567777777654
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (520)
++..||.+.. ++|+|..|.|||....... ...+.+.++|+|+|++++|..+++.... ..+
T Consensus 137 -~~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e 199 (456)
T PRK14356 137 -DPGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKSGE 199 (456)
T ss_pred -CCCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCc
Confidence 3568998876 5789999999886431100 0013478999999999998766654322 223
Q ss_pred CccccchHhhhhCCceEEEEEecc--eEEeCCCHHHHHHhhhhcccCCCC-----CCcccc-CCCccccCCCcCCCceee
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKKPIP-----DFSFYD-RSAPIYTQPRYLPPSKML 393 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~g--~w~dI~t~~dy~~An~~~l~~~~~-----~~~~~~-~~~~i~~~~~~~~~~~i~ 393 (520)
.+..++++.+++.+.+++++.+++ .|++|+|++||.+++..+...... ...+.+ +...+...+.+.+++.+.
T Consensus 200 ~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~ 279 (456)
T PRK14356 200 YYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIY 279 (456)
T ss_pred EEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEe
Confidence 345789999887788999999876 579999999999987766533110 001111 111222223333333332
Q ss_pred c-ccc-cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccc-------------------ccccc
Q 010006 394 D-ADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD-------------------RRFLA 451 (520)
Q Consensus 394 ~-~~i-~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-------------------~~~~~ 451 (520)
+ +.+ .++.||++|.|++ |.|.+|+||++|.|+++|.|.++++.+++.....+. .++.+
T Consensus 280 ~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i 359 (456)
T PRK14356 280 GPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVL 359 (456)
T ss_pred CCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEe
Confidence 1 112 3455555555555 555555555555555555555444444332221111 22333
Q ss_pred cCCCcceeeCCCCEEcceEECCCCEECCCcEEecCC-------CcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 452 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSD-------SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 452 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++++ .|++++.+.+++||+++.||+++.+.+.+ .+++.++++.++.|..+ ++||++++|++|++|
T Consensus 360 ~~~~---~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v 431 (456)
T PRK14356 360 GKGA---KANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVI 431 (456)
T ss_pred cCCc---EecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 3333 34444455567777888888887765533 34455555556666666 789999999999875
No 21
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.1e-40 Score=351.98 Aligned_cols=385 Identities=21% Similarity=0.253 Sum_probs=266.5
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|+++|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++++++++.+++.+++...
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 468999999999999984 699999999997 999999999999999999999999998888876541
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+.++. + . +..|++++++.++.++++ ..++|++++||. ++ ..++.++++.|++.++++++++.+.+
T Consensus 67 ---~~~~~--~--~---~~~g~~~al~~a~~~l~~-~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~-- 133 (458)
T PRK14354 67 ---SEFAL--Q--E---EQLGTGHAVMQAEEFLAD-KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE-- 133 (458)
T ss_pred ---cEEEE--c--C---CCCCHHHHHHHHHHHhcc-cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC--
Confidence 11211 1 1 137999999999988853 136799999997 44 46699999999887888888777653
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~ 322 (520)
++..|+.+..|++++|+.+.|||...... ...++.++|+|+|+++.|.+.+++.... ...
T Consensus 134 ~~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 134 NPTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred CCCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 35678888888889999999987531110 0135789999999998665566543221 222
Q ss_pred ccccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC------------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~------------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
+..++++.+++.+.++++|.++++ |+++++++||..|+..+..+. .|+..++.+.+.|...+.+.|
T Consensus 197 ~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~ 276 (458)
T PRK14354 197 YLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEP 276 (458)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeC
Confidence 347888888887889999999875 567789999988765432111 111123333344444444444
Q ss_pred Cceee-------------cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcc-cEEECCcccccccc-ccccccC
Q 010006 389 PSKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAK 453 (520)
Q Consensus 389 ~~~i~-------------~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~-~~~~~~~ 453 (520)
++.+. ++.|.+++|+++|.|+++.+.+++||++|.||++|.|.. +++.+++.....++ .++.+++
T Consensus 277 ~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~ 356 (458)
T PRK14354 277 GVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGE 356 (458)
T ss_pred CeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECC
Confidence 44332 233445566666666655555677777777777777763 33333322222222 3455555
Q ss_pred CCcceeeCCCCEEcceEECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 454 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 454 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++ .|++.+.+.+++|++|+.||.++.+.|.++ +++.++++.++.|..+ ++||++++|++|++|
T Consensus 357 ~~---~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 357 GT---KVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred CC---EecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 55 466666777888899999999988877543 3444555555555556 789999999999875
No 22
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-39 Score=336.92 Aligned_cols=382 Identities=19% Similarity=0.342 Sum_probs=289.3
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
..++||+||.-+-+||+|+|...|++|||++ |.|||+|+|++|..+|+.+|+|.+..+..++++|+.+.. |.. .+.
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPla-NVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~se-w~~--~~~ 98 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLA-NVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSE-WYL--PMS 98 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeec-CchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcc-ccc--ccc
Confidence 5689999999999999999999999999998 569999999999999999999999999999999999843 211 111
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHh-----cCCcEEEEEEec
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRE-----TDADITVAALPM 242 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~-----~~a~~tl~~~~~ 242 (520)
-.+..+.. + + ....+|++|..... .....+|++++||++.+++|.+++++|++ +++.||+++.+.
T Consensus 99 -~~v~ti~s---~-~---~~S~GDamR~id~k--~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~ 168 (673)
T KOG1461|consen 99 -FIVVTICS---G-E---SRSVGDAMRDIDEK--QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKES 168 (673)
T ss_pred -ceEEEEcC---C-C---cCcHHHHHHHHHhc--ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecc
Confidence 11222211 1 1 14456666654421 11358999999999999999999999964 345688888775
Q ss_pred CcccCcceEEEEeCC-CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC--C
Q 010006 243 DEKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--G 319 (520)
Q Consensus 243 ~~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--~ 319 (520)
......+-.++.+|. +.|+..|.+... ......++..++...+ ....+.++.+++|-+|+++++. ++.++|. .
T Consensus 169 st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq~ 244 (673)
T KOG1461|consen 169 STRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLS-LFTDNFDYQT 244 (673)
T ss_pred ccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHH-Hhhhccccee
Confidence 321223334556665 478888875221 1234567777776664 3446688999999999999997 8888876 4
Q ss_pred CCCccccchHhhhhCCceEEEEEecc--eEEeCCCHHHHHHhhhhcccCC----CCCCccccCCCccccCCCcC--CCce
Q 010006 320 ANDFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKKP----IPDFSFYDRSAPIYTQPRYL--PPSK 391 (520)
Q Consensus 320 ~~~~~~dil~~li~~~~~v~a~~~~g--~w~dI~t~~dy~~An~~~l~~~----~~~~~~~~~~~~i~~~~~~~--~~~~ 391 (520)
..||...+|-.-+- |++|+++.... |..++.+...|...+..++.++ +|+..+.+-...-+..-.++ |-+.
T Consensus 245 r~DfV~GvL~~dil-g~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~ 323 (673)
T KOG1461|consen 245 RDDFVRGVLVDDIL-GYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVV 323 (673)
T ss_pred hhhhhhhhhhhhhc-CCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccce
Confidence 56787777775554 99999999975 8999999999998888776553 56656655221111111111 1111
Q ss_pred ee-cccc-cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc
Q 010006 392 ML-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR 468 (520)
Q Consensus 392 i~-~~~i-~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 468 (520)
+. .+.+ .+++||.|+.|+. +.|.||+||.+|+||.+|+|.++.+|.+ |+||+||.|++
T Consensus 324 ~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~I~~ 384 (673)
T KOG1461|consen 324 LSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCRIDH 384 (673)
T ss_pred ehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCceEee
Confidence 11 2333 6789999999998 9999999999999999999999999997 69999999999
Q ss_pred eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 469 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|+|++++.|+++|.+.. ||+|+.+ |++|+|-+++.+++|
T Consensus 385 aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 385 AIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred eEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 99999999999999975 8999999 999999999999764
No 23
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.5e-39 Score=341.63 Aligned_cols=376 Identities=20% Similarity=0.247 Sum_probs=247.0
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.+.+ ++|+|++++..+.+.+++...
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~------------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEW------------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccc------------
Confidence 6899999999999984 689999999997 99999999999975 899999999888888776541
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.++. + . ..+|++++++.++.+++. .++|++++||+ +.+.++.++++.|+++++++++++.+.+ ++
T Consensus 64 -~~~~~--~--~---~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~ 131 (448)
T PRK14357 64 -VKIFL--Q--E---EQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DP 131 (448)
T ss_pred -cEEEe--c--C---CCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CC
Confidence 12221 1 1 137999999999988853 47899999998 4567799999999888899999888764 46
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC--C-Ccc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA--N-DFG 324 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~--~-~~~ 324 (520)
..|+.+..| +++| .+.|||..+... ...++.++|+|+|++++|.+++++..+.. . .+.
T Consensus 132 ~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~ 192 (448)
T PRK14357 132 TGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYL 192 (448)
T ss_pred CCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEH
Confidence 789998887 6788 777866532211 11247899999999999877766432211 1 223
Q ss_pred ccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccC------------CCCCCccccCCCccccCCCcCCCc
Q 010006 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKK------------PIPDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~------------~~~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
.|+++.+ .++++|.+.++ |.+++++++|..+...+... ..|...++++.+.|...+.+.|++
T Consensus 193 ~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~ 268 (448)
T PRK14357 193 TDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMT 268 (448)
T ss_pred HHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCc
Confidence 5666555 35888888888 66777998887765433110 001122444455555555555555
Q ss_pred eee-------------cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcc-cEEECCcccccccc-ccccccCCC
Q 010006 391 KML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAKGS 455 (520)
Q Consensus 391 ~i~-------------~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~-~~~~~~~~~ 455 (520)
.+. ++.+.+++||++|.|..+.+.+|+||.++.|++++.|.. +++.+++.....++ .++.||+++
T Consensus 269 ~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~ 348 (448)
T PRK14357 269 FIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENT 348 (448)
T ss_pred EEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCc
Confidence 443 122333444444444334444555555555555655543 22222221111111 233444444
Q ss_pred cceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCc-ccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 456 VPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 456 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
.+++.+.+.+++||+||.||+++++.+..+..+. .+++++++|+.+. ++||+++.|++|++|
T Consensus 349 ---~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 349 ---KAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred ---CccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 3445555667888888888888887765433332 3455555555441 788999999998875
No 24
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-39 Score=310.08 Aligned_cols=330 Identities=20% Similarity=0.322 Sum_probs=266.9
Q ss_pred cceEEEEEeCC--CCCCCCccccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHHHHHHHHhhhccCCC
Q 010006 88 RSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (520)
Q Consensus 88 ~~~~aIILAaG--~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (520)
++++||||.|| +||||+||+-+.||||+|++|. |||+|.|+.|.+ .|..+|+++.-|..+.+.+|+..-.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~----- 74 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQ----- 74 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHh-----
Confidence 35899999999 8999999999999999999997 999999999998 78999999988888888888876322
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.++. ++..+.. +.++||+++|+..++.+-....+.|+++++|.+++..|++|++.|+..+...+++...+..
T Consensus 75 e~~~-pvrYL~E-------~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~ 146 (407)
T KOG1460|consen 75 EFKV-PVRYLRE-------DNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSR 146 (407)
T ss_pred hccc-chhhhcc-------CCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecH
Confidence 1111 1333322 1249999999999977766567889999999999999999999999999999999999998
Q ss_pred ccCcceEEEEeC-CCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh---hh----
Q 010006 245 KRATAFGLMKID-EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DK---- 316 (520)
Q Consensus 245 ~~~~~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~---~~---- 316 (520)
++++.||.+..| ..++|..+.|||.... ++..++|+|+|++++|..+-+ +.
T Consensus 147 e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~~~~ 205 (407)
T KOG1460|consen 147 EQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQDLL 205 (407)
T ss_pred hHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHHhhh
Confidence 899999999998 4599999999999875 458999999999999874321 11
Q ss_pred ---------CCCCCCc---cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCC
Q 010006 317 ---------FPGANDF---GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQP 384 (520)
Q Consensus 317 ---------~~~~~~~---~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~ 384 (520)
.+...|| +.|++..|+. ..++|+|..+++|..|.|+..-+.|+..++.+.. -..+. .+.+
T Consensus 206 ~~~~~~~~l~~g~~d~irLeqDvlspLag-~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk----~t~p~-~Lak-- 277 (407)
T KOG1460|consen 206 EVEKDLPLLQPGPADFIRLEQDVLSPLAG-SKQLYAYETTDFWSQIKTAGSALYASRLYLSQYK----RTHPA-RLAK-- 277 (407)
T ss_pred hhhhcccccCCCccceEEeechhhhhhcC-CCceEEEecccHHHHhccccceeehhhhHHHHHh----hcCch-hhcC--
Confidence 1122344 4799999998 7899999999999999999999999998876431 01110 1110
Q ss_pred CcCCCc--eeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceee
Q 010006 385 RYLPPS--KMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGI 460 (520)
Q Consensus 385 ~~~~~~--~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I 460 (520)
.|++ .+ |.|+.|.+.+.+.+ ++|. |..||.+++||+|++|.+|+|.+. +.|
T Consensus 278 --~pgt~a~I----igdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei 332 (407)
T KOG1460|consen 278 --GPGTQAEI----IGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDD-------------------AEI 332 (407)
T ss_pred --CCCCCceE----EeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccC-------------------cEe
Confidence 1111 22 35677777777776 7776 899999999999999999999996 689
Q ss_pred CCCCEEcceEECCCCEECCCcEEec
Q 010006 461 GKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 461 g~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.+|+.+-+||||-.+.||..+++..
T Consensus 333 ~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 333 EENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred eccceEEeeeecccccccceeeecc
Confidence 9999999999999999999999865
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.6e-38 Score=335.49 Aligned_cols=381 Identities=18% Similarity=0.237 Sum_probs=263.5
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+++.+++.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6899999999999985 689999999987 9999999999999999999999998888888876511
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
.+.++. + .+..|++++++.++.++++ ..+++++++||. +...++.++++.|++.+++++++..+.+ ++
T Consensus 67 ~i~~v~--~-----~~~~G~~~sv~~~~~~l~~-~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~--~~ 136 (450)
T PRK14360 67 GLEFVE--Q-----QPQLGTGHAVQQLLPVLKG-FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP--NP 136 (450)
T ss_pred CeEEEE--e-----CCcCCcHHHHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC--CC
Confidence 133332 1 1237899999999988863 235799999999 4456799999999988888887766543 35
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCCcc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~~~ 324 (520)
..|+.+..|++|+|.++.|||...... ..++++++|+|+|+++.|.+++++..+. ...+.
T Consensus 137 ~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~ 199 (450)
T PRK14360 137 KGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL 199 (450)
T ss_pred CCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH
Confidence 679999998889999999998643211 1135889999999999988777654332 22334
Q ss_pred ccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC-----CCCCccccC-------CCccccC-------
Q 010006 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP-----IPDFSFYDR-------SAPIYTQ------- 383 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~-----~~~~~~~~~-------~~~i~~~------- 383 (520)
+|.++.+. ++..+.+.++ |..+++++++..+...+.... .+...++.+ ...+...
T Consensus 200 td~i~~~~----~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~ 275 (450)
T PRK14360 200 TDTVSLLD----PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQT 275 (450)
T ss_pred HHHHHHHh----hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCC
Confidence 66666653 3455666765 566999999887765432110 011112222 2222222
Q ss_pred -----CCcCCCceee-cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcc-cEEECCcccccccc-ccccccCCC
Q 010006 384 -----PRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAKGS 455 (520)
Q Consensus 384 -----~~~~~~~~i~-~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~-~~~~~~~~~ 455 (520)
+.+.+++.+. ++.|.+++|+++|.|+.+.+.+|+||++|.|+.+|.|.+ +++.+++.....+. .++.+++++
T Consensus 276 ~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~ 355 (450)
T PRK14360 276 HLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGS 355 (450)
T ss_pred EEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCc
Confidence 2233333332 344556666777777555566788888888888888874 44444333222222 345566665
Q ss_pred cceeeCCCCEEcceEECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 456 VPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 456 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.|++++.+.+++|+++|.||.++++.+.++ +++++++|.++.|.++ ++||++++|++|++|
T Consensus 356 ---~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 356 ---KVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred ---EeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 566666777789999999999999876443 4455555555555566 889999999998875
No 26
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-38 Score=313.78 Aligned_cols=349 Identities=21% Similarity=0.333 Sum_probs=253.3
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCC
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGG 164 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~ 164 (520)
.|.+++|||+|||.||||--++...|||||||++ +|||+|+|++|.++|+++|+|++.. ..+.|+..|...+...+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn-~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~-- 82 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGN-KPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKK-- 82 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCC-cceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccc--
Confidence 4678999999999999999999999999999975 5999999999999999999999986 44567777777554321
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
..-++++-...+ . ..||+++|+.....++. +|||+++||.+.+.+++.+++.++..++...+++.....
T Consensus 83 --~~~~v~ip~~~~----~--d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s 151 (433)
T KOG1462|consen 83 --RPDYVEIPTDDN----S--DFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS 151 (433)
T ss_pred --cccEEEeecccc----c--ccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc
Confidence 111243322222 1 27999999999988874 799999999999999999999999877765554443211
Q ss_pred ---------ccCcceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 245 ---------KRATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 245 ---------~~~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
+....+.++.++++ +|+.......+ ....+.+..++|+..|... ..+.+.++++|+|+.++++ +|+
T Consensus 152 ~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d--~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~d-~l~ 227 (433)
T KOG1462|consen 152 EVPIPGQKGKKKQARDVIGINEDTERLAYSSDSAD--EEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVID-LLS 227 (433)
T ss_pred cccccCcccccccccceeeeccccceeEEeecCCc--CCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHHH-HHh
Confidence 11223445555554 45444332212 2234566667777666533 3467999999999999997 665
Q ss_pred hhCCCCCCccccchHhhhhCC--------------------------------ceEEEEEec--ceEEeCCCHHHHHHhh
Q 010006 315 DKFPGANDFGSEVIPGATSIG--------------------------------MRVQAYLYD--GYWEDIGTIEAFYNAN 360 (520)
Q Consensus 315 ~~~~~~~~~~~dil~~li~~~--------------------------------~~v~a~~~~--g~w~dI~t~~dy~~An 360 (520)
+. +.-.+|..+++|.+++.+ .++++|... .-+.+++|.-.|+++|
T Consensus 228 ~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN 306 (433)
T KOG1462|consen 228 EK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEIN 306 (433)
T ss_pred cC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhh
Confidence 32 233445566666665432 356666654 4588999999999999
Q ss_pred h--hcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEEC
Q 010006 361 L--GITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG 437 (520)
Q Consensus 361 ~--~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~ 437 (520)
+ .+.... ++..+....... . ...-.+++|+++|.|++ +.|+.|+||.+|.||+.|+|.+|++|+
T Consensus 307 ~~k~~~~l~-~e~~~~k~~~~~-----------~-~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~ 373 (433)
T KOG1462|consen 307 RDKKLKKLC-SEAKFVKNYVKK-----------V-ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMD 373 (433)
T ss_pred HHHHHHHhc-cccccccchhhh-----------e-eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeec
Confidence 4 333322 221221111000 0 11115789999999997 999999999999999999999999999
Q ss_pred CccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 438 ADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
+ |.||+++.|++||||.++.||+++.+.|
T Consensus 374 n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 374 N-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred C-------------------cEecCCcceecceecccceecCCCeeee
Confidence 8 7899999999999999999999999997
No 27
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.8e-38 Score=302.57 Aligned_cols=281 Identities=23% Similarity=0.338 Sum_probs=225.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCCCcCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.||+++ +...++++++++-.|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~g------- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFG------- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccccC-------
Confidence 7999999999999999999999999999987 999999999999999999999997 5577888888855543
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+.+..|. + +.|-|+|+..+.+++.+ ++|+++.||.++..++.++++.+.+...++++++.+++ +++
T Consensus 73 --v~itY~~Q~--~---p~GlA~Av~~a~~fv~~---~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~--dP~ 140 (286)
T COG1209 73 --VDITYAVQP--E---PDGLAHAVLIAEDFVGD---DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD--DPS 140 (286)
T ss_pred --cceEEEecC--C---CCcHHHHHHHHHhhcCC---CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC--Ccc
Confidence 345555552 2 28999999999998874 89999999997777999999999998899999999987 588
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCcc-cc
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDFG-SE 326 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~~-~d 326 (520)
+||++.+|++++|+.+.|||..+. ++++-+|+|+|++++|. .++.-.|. +.+++ +|
T Consensus 141 rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd 198 (286)
T COG1209 141 RYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITD 198 (286)
T ss_pred cceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceEehH
Confidence 999999999999999999999875 56999999999999997 55655553 44554 89
Q ss_pred chHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCc
Q 010006 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGC 406 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~ 406 (520)
+++.++++|..+...+..|.|.|.||+++|++|+..+..... +.......|.+++ -+++|...+
T Consensus 199 ~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~~~-----------~~G~~~~~~~~~~-----~~~~i~~~~ 262 (286)
T COG1209 199 AIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTVSK-----------RQGFKIACPEEIA-----WNGWIDGPG 262 (286)
T ss_pred HHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHHHh-----------hcCCEEeChhHEE-----EecEEechH
Confidence 999999999999999999999999999999999998764220 1111112222222 244555555
Q ss_pred EEee-eEEeeeEECCCCEECCCC
Q 010006 407 VIKN-CKIHHSVVGLRSCISEGA 428 (520)
Q Consensus 407 ~I~~-~~i~~s~Ig~~~~Ig~~~ 428 (520)
+++. +.+.+|.+|....++.++
T Consensus 263 ~~~~~~~l~~~~~G~y~~~~~~~ 285 (286)
T COG1209 263 LIGLASQLEKSGYGQYLLELLRA 285 (286)
T ss_pred hhccccchhhcCcchhhhhhhcC
Confidence 5555 555577777777666543
No 28
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=3.4e-37 Score=303.26 Aligned_cols=241 Identities=34% Similarity=0.616 Sum_probs=196.3
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeE-EEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKI-YVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I-~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
||||||||.||||+|||..+||||+|++|++|||+|+|++|.++|++++ +|+++++.+++.+|+++.+.+.+
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~~------- 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFGV------- 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGTE-------
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccccc-------
Confidence 7999999999999999999999999999877999999999999999995 55555788899999998665431
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcC-cceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN-VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~-~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
.+.++ .|. + ..||+++|++++.++.... .++|++++||++++.++.++++.|+++++++++++...+.++++
T Consensus 74 ~i~~i--~~~--~---~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
T PF00483_consen 74 KIEYI--VQP--E---PLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPS 146 (248)
T ss_dssp EEEEE--EES--S---SSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGG
T ss_pred cceee--ecc--c---ccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccc
Confidence 12222 221 1 2699999999999988632 24599999999999999999999999988543333333345688
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh--hhCCCCCCcccc
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DKFPGANDFGSE 326 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~--~~~~~~~~~~~d 326 (520)
.||++.+|++++|.+|.|||..... +.++++|+|+|++++|..+++ +......++..|
T Consensus 147 ~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d 206 (248)
T PF00483_consen 147 RYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTD 206 (248)
T ss_dssp GSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHH
T ss_pred cceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhHHHH
Confidence 9999999988999999999997542 348999999999999987654 233345567799
Q ss_pred chHhhhhCCceEEEEEecc--eEEeCCCHHHHHHhhhhccc
Q 010006 327 VIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g--~w~dI~t~~dy~~An~~~l~ 365 (520)
+++.+++++..+.++.+++ +|.||||+++|++|++.+++
T Consensus 207 ~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 207 AIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999999888899999998 79999999999999998764
No 29
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=4.1e-36 Score=302.14 Aligned_cols=247 Identities=21% Similarity=0.275 Sum_probs=190.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~ 164 (520)
|..|+|||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|+++|..+++.+|+...+.+. +..
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5689999999999999999999999999999987 9999999999999999999999999999999997643210 000
Q ss_pred --------CcCC---CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc--------ccHHHHH
Q 010006 165 --------YKNE---GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFI 225 (520)
Q Consensus 165 --------~~~~---~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll 225 (520)
.... ..+.+....| ++++||++++++++.++++ ++|++++||++++ .++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q-----~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li 151 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQ-----AQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMI 151 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeC-----CCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHH
Confidence 0000 0122222222 2459999999999999863 6899999999886 5899999
Q ss_pred HHHHhcCCcEEEEEEecCcccCcceEEEEeC----CCCC---EEEeeeCCChhhhhhcccccccccCCchhhccCCceee
Q 010006 226 QAHRETDADITVAALPMDEKRATAFGLMKID----EEGR---IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 298 (520)
Q Consensus 226 ~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d----~~g~---V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (520)
+.|.+.++.++ ++.+.. +++..||++.+| ++|+ |.+|.|||..+.. ..+.+++
T Consensus 152 ~~~~~~~~~~~-~~~~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~~ 211 (297)
T TIGR01105 152 ARFNETGRSQV-LAKRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMA 211 (297)
T ss_pred HHHHHhCCcEE-EEEEcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEEE
Confidence 99987777664 444433 247899999984 4564 5899999964321 0135899
Q ss_pred eeEEEEeHHHHHHHHhhhCCC-CCC-ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 299 MGIYVISKDVMLNLLRDKFPG-AND-FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 299 ~GIyifs~~vl~~ll~~~~~~-~~~-~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+|+|+|++++|. .++...+. .+. ..+|+++.+++ +.+++++.++|+|+|||+|++|++||..+.
T Consensus 212 ~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~-~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 212 VGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHh-cCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 999999999987 45443222 122 24799999998 669999999999999999999999988864
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=4.7e-35 Score=290.10 Aligned_cols=235 Identities=21% Similarity=0.369 Sum_probs=192.1
Q ss_pred EEEEeCC--CCCCCCccccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 92 GIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 92 aIILAaG--~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+... ..+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-----~~~- 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-----EFN- 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-----ccC-
Confidence 6999999 8999999999999999999997 999999999999 69999999999999999999986321 001
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+....+ .+ ..||+++++.++.+++....++|+|++||++++.|+.++++.|+++++++|+++.+.+.++..
T Consensus 74 --~~i~~~~~--~~---~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~ 146 (257)
T cd06428 74 --VPIRYLQE--YK---PLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQAS 146 (257)
T ss_pred --ceEEEecC--Cc---cCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccc
Confidence 22222222 11 289999999999888643347899999999999999999999999999999998876555678
Q ss_pred ceEEEEeC-CCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---------
Q 010006 249 AFGLMKID-EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--------- 318 (520)
Q Consensus 249 ~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--------- 318 (520)
.||++.+| ++++|..|.|||.... +.++++|+|+|++++|..+ .+..+
T Consensus 147 ~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e~~~~ 204 (257)
T cd06428 147 NYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQEAQLG 204 (257)
T ss_pred cccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhccccccccccc
Confidence 89999998 6789999999987432 2489999999999998644 32221
Q ss_pred ---------CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 319 ---------GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 319 ---------~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
...++..|+++.+++ ..++++|.++|||.||+|+++|+++|+.+
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 205 DDNNREGRAEVIRLEQDVLTPLAG-SGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccceeeehhhhhhHHhc-cCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 112345799999998 56999999999999999999999999753
No 31
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=7.6e-35 Score=293.56 Aligned_cols=246 Identities=22% Similarity=0.283 Sum_probs=191.4
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CC-
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MG- 163 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~- 163 (520)
|..|+|||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++||++|+|++++..+++.+|+...+.+. +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5689999999999999999999999999999997 9999999999999999999999999999999997533210 00
Q ss_pred -----------CCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc--------ccHHHH
Q 010006 164 -----------GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERF 224 (520)
Q Consensus 164 -----------~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~l 224 (520)
.... ..+.+....| .+ .+||++++++++.++. .++|+++.||++++ .|+.++
T Consensus 80 ~~k~~~l~~~~~~~~-~~~~i~~~~q--~~---~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~l 150 (297)
T PRK10122 80 RVKRQLLAEVQSICP-PGVTIMNVRQ--GQ---PLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAM 150 (297)
T ss_pred cchhhhHHhhhhccC-CCceEEEeec--CC---cCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHH
Confidence 0000 0122222333 12 3899999999999885 36799999999886 489999
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEEeC----CCC---CEEEeeeCCChhhhhhcccccccccCCchhhccCCcee
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMKID----EEG---RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d----~~g---~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (520)
++.|.+.+++++++ ....+ ++..||++.+| ++| +|++|.|||..+.. ..++++
T Consensus 151 i~~h~~~~~~~~~~-~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~ 210 (297)
T PRK10122 151 IARFNETGRSQVLA-KRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLM 210 (297)
T ss_pred HHHHHHhCCcEEEE-EECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc------------------CCccEE
Confidence 99998888775444 44332 57899999986 355 78999999964321 013589
Q ss_pred eeeEEEEeHHHHHHHHhhhCCC--CCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 298 SMGIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 298 ~~GIyifs~~vl~~ll~~~~~~--~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
++|+|+|++++|..+.+ ..+. ...+..|+++.+++ +.++.+|.++|+|+|||+|++|++|+..+.
T Consensus 211 ~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~-~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 211 AVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHh-CCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 99999999999985543 2232 22334799999998 679999999999999999999999999984
No 32
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.3e-34 Score=282.63 Aligned_cols=232 Identities=23% Similarity=0.354 Sum_probs=192.3
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|++||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+... ..+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~-----~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEK-----KLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccc-----cCC--
Confidence 6899999999999999999999999999987 99999999999999999999999999999999875210 111
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 249 (520)
++++...+ ....|++++++.++.+++. ..++|++++||++++.++.++++.|+++++++++++.+.+ ++..
T Consensus 73 -~~i~~~~~-----~~~~G~~~al~~a~~~~~~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 143 (233)
T cd06425 73 -IKITFSIE-----TEPLGTAGPLALARDLLGD-DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE--DPSK 143 (233)
T ss_pred -eEEEeccC-----CCCCccHHHHHHHHHHhcc-CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC--Cccc
Confidence 33332211 1138999999999988863 2467999999999999999999999999999999988764 3568
Q ss_pred eEEEEeCC-CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccch
Q 010006 250 FGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (520)
Q Consensus 250 ~g~v~~d~-~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil 328 (520)
||++.+|+ +++|.++.|||.... +.++++|+|+|++++|..+ .. ...++..+++
T Consensus 144 ~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~~~~~ 198 (233)
T cd06425 144 YGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSIEKEIF 198 (233)
T ss_pred cCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---CcccchhhhH
Confidence 99999987 789999999987532 2478999999999999744 32 2234457899
Q ss_pred HhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 329 ~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+.+++ ..++++|.++|+|.||+|+++|++|+..++
T Consensus 199 ~~l~~-~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 199 PKMAS-EGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred HHHHh-cCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99998 569999999999999999999999988653
No 33
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=4.4e-34 Score=286.75 Aligned_cols=236 Identities=23% Similarity=0.372 Sum_probs=188.8
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~ 165 (520)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++.+ ..+.+.+|+++...|++.
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~~-- 77 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLN-- 77 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCccccCce--
Confidence 5679999999999999999999999999999997 999999999999999999987764 467788898875555321
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
+. ...| .. +.|+++++..+.+++.+ ++++++.||.+ ++.++.++++.|.+.++++|+++.+++
T Consensus 78 -----i~--y~~q--~~---~~Gta~Al~~a~~~i~~---~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~- 141 (292)
T PRK15480 78 -----LQ--YKVQ--PS---PDGLAQAFIIGEEFIGG---DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN- 141 (292)
T ss_pred -----eE--EEEC--CC---CCCHHHHHHHHHHHhCC---CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-
Confidence 11 2222 11 38999999999998853 56888899975 578999999999888888998887764
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF 323 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~ 323 (520)
++..||++..|++|+|+.|.|||..+. ++++++|+|+|++++++ .++...+. ..++
T Consensus 142 -~p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~~~ge~ 198 (292)
T PRK15480 142 -DPERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPSARGEL 198 (292)
T ss_pred -CcccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCCCCCee
Confidence 467899999998899999999997432 35889999999999887 44433332 2233
Q ss_pred -cccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhcc
Q 010006 324 -GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 324 -~~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~l 364 (520)
.+|+++.+++++.....+...+ +|+|+||+++|.+|+..+.
T Consensus 199 ~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 199 EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 3789999988665445556678 5999999999999998764
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.9e-33 Score=275.81 Aligned_cols=231 Identities=25% Similarity=0.362 Sum_probs=185.4
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccC-hhHHHHHHHHhhhccCCCCcCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++ .+++.+|+.+...|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~------- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLG------- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcccccC-------
Confidence 6899999999999999999999999999975 9999999999999999999998754 478889988744443
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.+....+ . ...|++++++.++.+++ .++|++++||++ .+.++.++++.|.+.++++++++.+.++ +
T Consensus 73 --~~i~~~~~--~---~~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 140 (240)
T cd02538 73 --IRITYAVQ--P---KPGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--P 140 (240)
T ss_pred --ceEEEeeC--C---CCCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--h
Confidence 22222222 1 13799999999998886 368999999984 4677999999998888889988877643 5
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc-cc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-GS 325 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~ 325 (520)
..||.+.+|++|+|+.|.|||.... ..+.++|+|+|++++|+ ++++..+. ..++ ..
T Consensus 141 ~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~ 198 (240)
T cd02538 141 ERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEIT 198 (240)
T ss_pred hcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhH
Confidence 6899999998899999999986432 24789999999999885 56543322 2223 36
Q ss_pred cchHhhhhCCceEEEEEec--ceEEeCCCHHHHHHhhhhc
Q 010006 326 EVIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~--g~w~dI~t~~dy~~An~~~ 363 (520)
++++.+++ ..++.++.++ ++|+||||+++|++++..+
T Consensus 199 d~~~~l~~-~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 199 DVNNEYLE-KGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred HHHHHHHH-hCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 89999998 4467777766 9999999999999999865
No 35
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=3.6e-33 Score=276.03 Aligned_cols=243 Identities=19% Similarity=0.297 Sum_probs=189.8
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhc--cCCCCcCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS--NMGGYKNE 168 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~--~~~~~~~~ 168 (520)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.... ++......
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999987 999999999999999999999999999999999763211 00000000
Q ss_pred CeEEEeecccCC-----CCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 169 GFVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 169 ~~v~vl~~~~~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
+...+......+ ..+.-.+||++++++++.+++ .++|++++||++++.|+.++++.|.+.++++|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~-- 154 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ-- 154 (254)
T ss_pred cccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec--
Confidence 000000000000 000113899999999998885 3789999999999999999999999999998877653
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
++..||.+.+|+ ++|+.|.|||... +.++++|+|+|++++|. ++++ ...++
T Consensus 155 --~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~---~~~~~ 205 (254)
T TIGR02623 155 --PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDG---DATVW 205 (254)
T ss_pred --CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hccc---cCchh
Confidence 356899999985 6999999998542 23789999999999985 5553 23356
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCC
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~ 369 (520)
..|+++.++++ .++++|.++|+|.||+|+++|.+++..+.....|
T Consensus 206 ~~d~i~~l~~~-~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~~~ 250 (254)
T TIGR02623 206 EQEPLETLAQR-GELSAYEHSGFWQPMDTLRDKNYLEELWESGRAP 250 (254)
T ss_pred hhhHHHHHHhC-CCEEEEeCCCEEecCCchHHHHHHHHHHHcCCCC
Confidence 78999999984 5899999999999999999999999988765533
No 36
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=4.4e-33 Score=277.51 Aligned_cols=244 Identities=23% Similarity=0.313 Sum_probs=188.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccC-----CC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~-----~~ 164 (520)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+.+.. +.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999997 99999999999999999999999999999999976443310 00
Q ss_pred Cc--------CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccc---cHHHHHHHHHhcCC
Q 010006 165 YK--------NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRETDA 233 (520)
Q Consensus 165 ~~--------~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~~a 233 (520)
.+ ..+ +++.... +.+..|++++++.++.++++ ++|++++||+++.. ++.++++.|++.++
T Consensus 80 ~~~~~~~~~~~~~-~~i~~~~-----~~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 80 TDLLEEVRIISDL-ANIHYVR-----QKEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred HHHhhhhhcccCC-ceEEEEE-----cCCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 00 000 1221111 12348999999999988863 68999999997753 49999999987776
Q ss_pred cEEEEEEecCcccCcceEEEEeCC----CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 234 DITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 234 ~~tl~~~~~~~~~~~~~g~v~~d~----~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
++ +++.+.+.+++..||++.+|+ .++|..+.|||..... .+.++++|+|+|++++|
T Consensus 151 ~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~ 210 (267)
T cd02541 151 SV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIF 210 (267)
T ss_pred CE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHH
Confidence 64 555565545577899999985 2489999999864211 13488999999999998
Q ss_pred HHHHhhhCC-CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 310 LNLLRDKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 310 ~~ll~~~~~-~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
..+.+.... ....+..++++.+++++ ++++|.++|+|.||+|+++|+++|+.+.
T Consensus 211 ~~l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 211 DILENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 755331111 12233578899999855 9999999999999999999999999764
No 37
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=4.6e-33 Score=276.23 Aligned_cols=240 Identities=20% Similarity=0.278 Sum_probs=184.9
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccC-----CC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~-----~~ 164 (520)
|+|||||||.||||+|||..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+++.+.+.. +.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999997 99999999999999999999999999999999985432210 00
Q ss_pred Cc-----C--CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccc---cHHHHHHHHHhcCCc
Q 010006 165 YK-----N--EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRETDAD 234 (520)
Q Consensus 165 ~~-----~--~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~~a~ 234 (520)
.. . ...+.+.... +.+..|++++++.++.++. .++|++++||+++.. ++.++++.|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~-----~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVR-----QKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred HHHHHHhhhccccceEEEEe-----cCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 00 0 0001111111 1234899999999998884 378999999997653 799999999988887
Q ss_pred EEEEEEecCcccCcceEEEEeCC----CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHH
Q 010006 235 ITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML 310 (520)
Q Consensus 235 ~tl~~~~~~~~~~~~~g~v~~d~----~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~ 310 (520)
+ +++...+.++...||++.+|+ +++|+.|.|||..... .+.++++|+|+|++++|.
T Consensus 152 i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~ 211 (260)
T TIGR01099 152 I-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFD 211 (260)
T ss_pred E-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHH
Confidence 6 555555555678899999862 3699999999953211 134889999999999988
Q ss_pred HHHhhhCCCC-CCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHh
Q 010006 311 NLLRDKFPGA-NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (520)
Q Consensus 311 ~ll~~~~~~~-~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~A 359 (520)
.+........ ..+..|+++.+++ ..++++|.++|||.||+|+++|++|
T Consensus 212 ~l~~~~~~~~~~~~l~d~i~~l~~-~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 212 LLEETPPGAGGEIQLTDALRKLLE-KETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHhCCCCCCCceeHHHHHHHHHh-cCCEEEEEcceEEEeCCCHHHHhhC
Confidence 6544222212 2334788999998 4689999999999999999999875
No 38
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=7.5e-33 Score=277.44 Aligned_cols=231 Identities=26% Similarity=0.403 Sum_probs=185.5
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEec-cChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+|||||||.||||+|+|..+||+|+||+|+ |||+|+|+++..+|+++|+|+++ ++.+.+.+++.++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g-------- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWG-------- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccccccC--------
Confidence 589999999999999999999999999987 99999999999999999998886 56678888887754443
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+....| .+ ..|+++++..++.++++ ++++++.||. +++.++.++++.|.+.++++++++.+++ ++.
T Consensus 72 -~~i~~~~q--~~---~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~ 140 (286)
T TIGR01207 72 -VNLSYAVQ--PS---PDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPE 140 (286)
T ss_pred -ceEEEEEc--cC---CCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHH
Confidence 22323333 12 28999999999999863 6788889997 5678899999999888888998888765 467
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC-CCCCc-ccc
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF-GSE 326 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~~~-~~d 326 (520)
.||++..|++|+|.+|.|||..+. ++++++|+|+|++++++ ++++..+ ...++ ..|
T Consensus 141 ~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitd 198 (286)
T TIGR01207 141 RYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGELEITD 198 (286)
T ss_pred HCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHH
Confidence 899999998899999999996432 34899999999999876 5554333 22333 369
Q ss_pred chHhhhhCCceEEEEEe-cce-EEeCCCHHHHHHhhhhcc
Q 010006 327 VIPGATSIGMRVQAYLY-DGY-WEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 327 il~~li~~~~~v~a~~~-~g~-w~dI~t~~dy~~An~~~l 364 (520)
+++.+++++ ++.++.+ .|+ |.|+||+++|++|+..+.
T Consensus 199 v~~~~l~~g-~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 199 LNRVYLEEG-RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred HHHHHHHcC-CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 999999854 4555555 576 999999999999987653
No 39
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=1.6e-32 Score=277.10 Aligned_cols=244 Identities=23% Similarity=0.318 Sum_probs=191.9
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCCC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGY 165 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~~ 165 (520)
+-|+|||||||.|+||+|+|+.+||+|+|++|+ |+|+|+|++|.++|+++|+|++++..+++.+|+.+.+.|+ ++.+
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 348999999999999999999999999999997 9999999999999999999999999999999998755442 1111
Q ss_pred cCC----C-------eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc--------ccHHHHHH
Q 010006 166 KNE----G-------FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFIQ 226 (520)
Q Consensus 166 ~~~----~-------~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll~ 226 (520)
... . ...+....| ....|+++++++++.++. +++|++++||++++ .++.++++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q-----~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~ 157 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQ-----GLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIR 157 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeec-----CCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHH
Confidence 000 0 011211122 224899999999998875 36899999999874 68999999
Q ss_pred HHHhcCCcEEEEEEecCcccCcceEEEEeCC-------CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeee
Q 010006 227 AHRETDADITVAALPMDEKRATAFGLMKIDE-------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299 (520)
Q Consensus 227 ~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~-------~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (520)
.|.+.+++ ++++.++ +++..||++..|+ +++|..|.|||..... .+.++++
T Consensus 158 ~h~~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~ 215 (302)
T PRK13389 158 RFDETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIV 215 (302)
T ss_pred HHHhcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEE
Confidence 99888776 6777665 3467899998863 3579999999974321 1248999
Q ss_pred eEEEEeHHHHHHHHhhhCC--CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 300 GIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 300 GIyifs~~vl~~ll~~~~~--~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
|+|+|++++|. +++...+ ....+..|+++.+++ +.++++|.++|+|+|||||++|++|+..+.
T Consensus 216 GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~-~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 216 GRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIE-KETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred EEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHH-cCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 99999999985 6654332 222345899999998 568999999999999999999999999874
No 40
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=3.4e-32 Score=265.89 Aligned_cols=233 Identities=25% Similarity=0.394 Sum_probs=191.6
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.+...|++ .
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~------~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGV------R 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhcCC------e
Confidence 7899999999999999999999999999987 99999999999999999999999999999999987544421 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 249 (520)
+.++. + .+..|++++++.++.+++ .++|++++||++++.++.++++.|.+.++++++++.+.+ ++..
T Consensus 74 -i~~~~--~-----~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 140 (236)
T cd04189 74 -ITYIL--Q-----EEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--DPRR 140 (236)
T ss_pred -EEEEE--C-----CCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--Cccc
Confidence 22221 1 123799999999998875 368999999999999999999999988889888888764 3567
Q ss_pred eEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC--CCCccccc
Q 010006 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (520)
Q Consensus 250 ~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~~~~~~di 327 (520)
|+++.+|+ ++|..+.|||.... +.+.++|+|+|++++|..+ +...+. ...+..++
T Consensus 141 ~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~d~ 197 (236)
T cd04189 141 FGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELEITDA 197 (236)
T ss_pred ceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEEHHHH
Confidence 88888874 59999999986432 2478999999999998744 332221 12234789
Q ss_pred hHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhccc
Q 010006 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~ 365 (520)
++.+++.+.+++++.++++|.+|+|+++|.++++.+++
T Consensus 198 ~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 198 IQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 99999878899999999999999999999999988764
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.5e-32 Score=265.84 Aligned_cols=219 Identities=24% Similarity=0.369 Sum_probs=180.0
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCe
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (520)
+|||||||.|+||+|+|+.+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+ ..|+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~--------- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-SRFG--------- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-ccCC---------
Confidence 589999999999999999999999999997 99999999999999999999999999999999986 2232
Q ss_pred EEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHH--hcCCcEEEEEEecCcccCc
Q 010006 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHR--ETDADITVAALPMDEKRAT 248 (520)
Q Consensus 171 v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~--~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+....+ +.+..|++++++.++.++++ ++|++++||++++.++.++++.|. +.++.+++...+.+ ...
T Consensus 70 ~~i~~~~~----~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (221)
T cd06422 70 LRITISDE----PDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--GHN 140 (221)
T ss_pred ceEEEecC----CCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--CCC
Confidence 22222221 11247999999999988853 689999999999999999999998 45566666655533 466
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccch
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil 328 (520)
.||.+.+|++++|..+.+||.. .+.++|+|+|++++|..+.+. .....+++
T Consensus 141 ~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~ 191 (221)
T cd06422 141 GVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSLNPLW 191 (221)
T ss_pred CcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccHHHHH
Confidence 8899999988999999888753 278999999999998855331 22347899
Q ss_pred HhhhhCCceEEEEEecceEEeCCCHHHHHHh
Q 010006 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (520)
Q Consensus 329 ~~li~~~~~v~a~~~~g~w~dI~t~~dy~~A 359 (520)
+.+++ ..++.++.++++|.||+|+++|.+|
T Consensus 192 ~~l~~-~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 192 DRAIA-AGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHH-cCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99998 5689999999999999999999875
No 42
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=7.5e-32 Score=266.59 Aligned_cols=242 Identities=18% Similarity=0.274 Sum_probs=190.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCCCcCCC
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGYKNEG 169 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~~~~~~ 169 (520)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+..... +......+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999987 9999999999999999999999999999999998743211 00000111
Q ss_pred eEEEeecccCC-----CCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 170 FVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 170 ~v~vl~~~~~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.+.++.....+ ....-.+|++++++.++.++.+ .++|++++||++++.++.++++.|.+.++++++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--- 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--- 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12222210000 0000126799999999988852 2689999999999999999999999989998887653
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
+...|+.+.+|++|+|..+.|||... +.++++|+|+|++++++. ++.. ..++.
T Consensus 155 -~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~~~~~ 207 (253)
T cd02524 155 -PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---DTVFE 207 (253)
T ss_pred -CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---cchhh
Confidence 35689999999889999999998743 137889999999999864 4322 44566
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCC
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~ 367 (520)
.++++.++++ .++++|.++|+|.+|+|+++|..++..+....
T Consensus 208 ~d~l~~li~~-~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~~ 249 (253)
T cd02524 208 REPLERLAKD-GELMAYKHTGFWQCMDTLRDKQTLEELWNSGK 249 (253)
T ss_pred HHHHHHHHhc-CCEEEEecCCEEEeCcCHHHHHHHHHHHHcCC
Confidence 7999999984 58999999999999999999999998886654
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.98 E-value=3.3e-31 Score=255.87 Aligned_cols=223 Identities=27% Similarity=0.491 Sum_probs=183.2
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+.++ .. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~------~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGG------IR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccC------ce-E
Confidence 69999999999999999999999999987 9999999999999999999999999999999987643221 11 1
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.+.. + .+ ..|++++++.++..++ .++|++++||++++.++.++++.|++.+.++++++.+.+. ...|+
T Consensus 73 ~~~~--~--~~---~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 140 (223)
T cd06915 73 YYVI--E--PE---PLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYG 140 (223)
T ss_pred EEEE--C--CC---CCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--CCcce
Confidence 1111 1 11 2899999999998874 3789999999998889999999998888888888877543 46788
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccchHhh
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil~~l 331 (520)
.+.+|++|+|..+.|||.... +++.++|+|+|++++|..+... ..++.+++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l 195 (223)
T cd06915 141 NVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADVLPAL 195 (223)
T ss_pred eEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHH
Confidence 888988899999999876431 3588999999999998754221 234567899999
Q ss_pred hhCCceEEEEEecceEEeCCCHHHHHHhh
Q 010006 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (520)
Q Consensus 332 i~~~~~v~a~~~~g~w~dI~t~~dy~~An 360 (520)
++.+ ++.+|.++++|.||+|++||+.|+
T Consensus 196 ~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 196 VKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 9855 999999999999999999999873
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.98 E-value=6.6e-31 Score=252.89 Aligned_cols=217 Identities=29% Similarity=0.531 Sum_probs=181.6
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+...|+. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~-------~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGV-------NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCc-------eE
Confidence 69999999999999999999999999987 99999999999999999999999988999999877433321 12
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++. + . ...|++++++.++..+. .++|++++||++++.++.++++.|.++++++++++.+.+ ++..|+
T Consensus 73 ~~~~--~--~---~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 140 (217)
T cd04181 73 EYVV--Q--E---EPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYG 140 (217)
T ss_pred EEEe--C--C---CCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 2221 1 1 12799999999998872 479999999999999999999999999999998888755 567899
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccchHhh
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil~~l 331 (520)
.+.+|++++|..+.|||.... .+++++|+|+|++++++ ++++......++..++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l 198 (217)
T cd04181 141 VVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLL 198 (217)
T ss_pred EEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHH
Confidence 999998899999999987542 24889999999999985 66544333456678999999
Q ss_pred hhCCceEEEEEecceEEeCC
Q 010006 332 TSIGMRVQAYLYDGYWEDIG 351 (520)
Q Consensus 332 i~~~~~v~a~~~~g~w~dI~ 351 (520)
++ ..+++++.++|+|+||+
T Consensus 199 ~~-~~~v~~~~~~g~w~dig 217 (217)
T cd04181 199 IE-EGKVYGYPVDGYWLDIG 217 (217)
T ss_pred Hh-cCCEEEEEcCCEEecCC
Confidence 98 48999999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=1.1e-30 Score=252.37 Aligned_cols=220 Identities=25% Similarity=0.453 Sum_probs=178.8
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+|+|+.+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+...|++ . +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~~------~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFGV------N-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccccCc------c-E
Confidence 69999999999999999999999999987 99999999999999999999999999999999877433321 1 2
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++ .+ ++..|+++++..+.... .++|++++||.+++.++.++++.|++.++++++++.+.. ....|+
T Consensus 73 ~~~--~~-----~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g 139 (220)
T cd06426 73 SYV--RE-----DKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE--VQVPYG 139 (220)
T ss_pred EEE--EC-----CCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 221 11 11378999987665433 478999999999999999999999988888888877643 345689
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccchHhh
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil~~l 331 (520)
++..|+ ++|..+.|||... .++++|+|+|+++++..+ ++ .......++++.+
T Consensus 140 ~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~~~~~ 191 (220)
T cd06426 140 VVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPDLIEKL 191 (220)
T ss_pred EEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHHHHHHH
Confidence 998885 8999999987642 377899999999998743 31 2222246889999
Q ss_pred hhCCceEEEEEecceEEeCCCHHHHHHhh
Q 010006 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (520)
Q Consensus 332 i~~~~~v~a~~~~g~w~dI~t~~dy~~An 360 (520)
++.+.++++|+++++|.||+|+++|++||
T Consensus 192 i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 192 IKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 98778899999999999999999999886
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=6.4e-30 Score=244.17 Aligned_cols=250 Identities=22% Similarity=0.339 Sum_probs=203.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~ 164 (520)
|+-.+|||+|||.||||-|.|+..||-||||-++ |+|+|+++.+..+||++|++||+.++..|.+|+...+.+. +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4668999999999999999999999999999876 9999999999999999999999999999999998766432 100
Q ss_pred CcC----------CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccc---cHHHHHHHHHhc
Q 010006 165 YKN----------EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRET 231 (520)
Q Consensus 165 ~~~----------~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~ 231 (520)
+-+ ...+.+....| .+ ++|.+||+++|..++.+ ++|.|+.+|.++.. .+.+|++.+.+.
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ--~e---~~GLGhAVl~A~~~vg~---EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~ 152 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQ--KE---PLGLGHAVLCAKPFVGD---EPFAVLLPDDLVDSEKPCLKQMIELYEET 152 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEec--CC---CCcchhHHHhhhhhcCC---CceEEEeCCeeecCCchHHHHHHHHHHHh
Confidence 000 11233444444 22 38999999999999974 89999999997764 399999999988
Q ss_pred CCcEEEEEEecCcccCcceEEEE----eCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeH
Q 010006 232 DADITVAALPMDEKRATAFGLMK----IDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISK 306 (520)
Q Consensus 232 ~a~~tl~~~~~~~~~~~~~g~v~----~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~ 306 (520)
+.. ++.+.+++.++.+.||++. .+++ .+|..+.|||....+ .++++..|-|+|++
T Consensus 153 g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p 212 (291)
T COG1210 153 GGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTP 212 (291)
T ss_pred CCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCH
Confidence 876 4777888878899999997 4333 589999999987654 26799999999999
Q ss_pred HHHHHHHhhhCCCC-CCc-cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCC
Q 010006 307 DVMLNLLRDKFPGA-NDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (520)
Q Consensus 307 ~vl~~ll~~~~~~~-~~~-~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~ 367 (520)
++|+ +|++..++. +++ .+|.|..+++ ...+++|.++|..+|+|++..|++|+..+....
T Consensus 213 ~IFd-~L~~~~~G~ggEiQLTDai~~L~~-~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 213 EIFD-ILEETKPGAGGEIQLTDAIKKLLK-KEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred HHHH-HHhhCCCCCCCEeeHHHHHHHHHh-hCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 9998 666544433 232 4888999998 689999999999999999999999999886553
No 47
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=4.7e-29 Score=237.89 Aligned_cols=199 Identities=48% Similarity=0.833 Sum_probs=162.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.||||+|+|+..||+|+|++|++|||+|+++++.++|+++|+|+++++.+++.+|+.+...|++. .....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLD--RKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCC--CCCCCE
Confidence 699999999999999999999999999865999999999999999999999999999999999876555432 111224
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++...+. .+++|..||+++++.++.++++...++|++++||++++.++.++++.|++.++++|+++.
T Consensus 79 ~~~~~~~~-~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 79 FILPPQQR-KGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEeCcccC-CCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 44443321 134567999999999999886433478999999999999999999999988888877664
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC-CCCCccccchHh
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDFGSEVIPG 330 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~~~~~dil~~ 330 (520)
+++|+|+|++++|.++++...+ ...++.+|+++.
T Consensus 147 ---------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~ 181 (200)
T cd02508 147 ---------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPA 181 (200)
T ss_pred ---------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 2479999999999777765322 234567899999
Q ss_pred hhhCCceEEEEEecceEEeC
Q 010006 331 ATSIGMRVQAYLYDGYWEDI 350 (520)
Q Consensus 331 li~~~~~v~a~~~~g~w~dI 350 (520)
++++ .++++|.++|+|.||
T Consensus 182 l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 182 MLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred Hhcc-CcEEEEEeCCeEecC
Confidence 9995 799999999999996
No 48
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.96 E-value=1.7e-29 Score=244.05 Aligned_cols=205 Identities=19% Similarity=0.309 Sum_probs=159.7
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+++.+.|+.... ..
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~--~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSS--LM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccC--cc
Confidence 5899999999999999999999999999987 99999999999999999999999999999999998766643210 01
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHH--HHhhhcCcceEEEEeCceeccccHHHHHHHHHh-----cCCcEEEEEEec
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYL--WLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRE-----TDADITVAALPM 242 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~--~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~-----~~a~~tl~~~~~ 242 (520)
.+.+. .+ .+ ..|++++++... ..+ .++|++++||++++.++.++++.|++ +++++|+++.+.
T Consensus 78 ~i~~~--~~--~~---~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~ 146 (217)
T cd04197 78 IVIII--MS--ED---CRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEA 146 (217)
T ss_pred eEEEE--eC--CC---cCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeC
Confidence 12222 11 11 267888886543 222 36899999999999999999999987 478899888887
Q ss_pred Cccc----CcceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 243 DEKR----ATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 243 ~~~~----~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
++.+ ...++++.+|++ ++|..|.|||..+.....++++.++...+. ...++++.++|+|+|++++|
T Consensus 147 ~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~-~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 147 SPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSE-VEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCc-EEEECCceecCEEEeCCCCC
Confidence 6443 223678888866 899999999987654445566666655443 33557899999999999764
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.96 E-value=4.2e-28 Score=236.27 Aligned_cols=223 Identities=21% Similarity=0.248 Sum_probs=168.1
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
.||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++++|++++.. ....++....... ..+ +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~---~~~---~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL---APN---A 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh---CCC---C
Confidence 48999999999999999999999999997 99999999999999999999986432 1222332211100 001 2
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++.... . ..|++++++.++..+.. .++|++++||++++.++.++++.|.+.+.++++++... +...|+
T Consensus 73 ~i~~~~~---~---~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~ 141 (231)
T cd04183 73 TVVELDG---E---TLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWS 141 (231)
T ss_pred EEEEeCC---C---CCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeE
Confidence 2221111 1 38999999999988742 36899999999999999999998887777777766654 345799
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHH-HHHHHHhhhC----CCCC-Cccc
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD-VMLNLLRDKF----PGAN-DFGS 325 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~-vl~~ll~~~~----~~~~-~~~~ 325 (520)
.+.+|++|+|..+.+|+.. +.+.++|+|+|+++ .|.+++++.. .... .+..
T Consensus 142 ~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (231)
T cd04183 142 YVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYIS 198 (231)
T ss_pred EEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEh
Confidence 9999988999999887432 23779999999987 5555554321 1122 2347
Q ss_pred cchHhhhhCCceEEEEEe-cceEEeCCCHHHH
Q 010006 326 EVIPGATSIGMRVQAYLY-DGYWEDIGTIEAF 356 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~-~g~w~dI~t~~dy 356 (520)
++++.+++.+.+|+++.+ +++|.||||+++|
T Consensus 199 d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 199 PLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 899999987888999999 5899999999987
No 50
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.96 E-value=3e-28 Score=237.06 Aligned_cols=223 Identities=19% Similarity=0.268 Sum_probs=170.1
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.. + +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~--------~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYP--------N---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhccC--------C---e
Confidence 69999999999999999999999999987 9999999999999999999999999999999987521 1 3
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++...+ .+ ..|++++++.++.++. ++|++++||++++.+ +++.|.+.++++++++.+........++
T Consensus 69 ~~~~~~~--~~---~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (229)
T cd02523 69 KFVYNPD--YA---ETNNIYSLYLARDFLD----EDFLLLEGDVVFDPS---ILERLLSSPADNAILVDKKTKEWEDEYV 136 (229)
T ss_pred EEEeCcc--hh---hhCcHHHHHHHHHHcC----CCEEEEeCCEecCHH---HHHHHHcCCCCCeEEEccCcccccccce
Confidence 3332111 11 3799999999998873 689999999998664 6677777788888888774433345565
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhh---hCC--CCCCcccc
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFP--GANDFGSE 326 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~---~~~--~~~~~~~d 326 (520)
....| ++++..+.+||..... ..+.++|+|+|+++++..+.+. ..+ ....+.++
T Consensus 137 ~~~~~-~~~v~~~~~k~~~~~~--------------------~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 195 (229)
T cd02523 137 KDLDD-AGVLLGIISKAKNLEE--------------------IQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYED 195 (229)
T ss_pred eeecC-ccceEeecccCCCcch--------------------hceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHH
Confidence 54333 3789999988865321 2478999999999998755331 111 23456689
Q ss_pred chHhhhh-CCceEEEEEecceEEeCCCHHHHHHhh
Q 010006 327 VIPGATS-IGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (520)
Q Consensus 327 il~~li~-~~~~v~a~~~~g~w~dI~t~~dy~~An 360 (520)
+++.+++ .+.+++.+.. ++|.||||+++|++|+
T Consensus 196 ~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 196 ALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred HHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 9999987 3445555555 8999999999999874
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=2.3e-26 Score=229.68 Aligned_cols=234 Identities=24% Similarity=0.340 Sum_probs=170.9
Q ss_pred eEEEEEeCCCCCCCCcccc-CCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChh-HHHHHHHHhhhccCCCCc
Q 010006 90 VLGIILGGGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSA-SLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~-~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~ 166 (520)
|++||||||.||||+|||+ .+||+|+|++|++|||+++++++... ++++|+|+++++.. .+.+++.+ ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~~------- 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-GL------- 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-cC-------
Confidence 6899999999999999996 79999999998559999999999998 49999999997553 45555544 00
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc-CcceEEEEeCceecc--ccHHHHHHHHHh---cCCcEEEEEE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYR--MDYERFIQAHRE---TDADITVAAL 240 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~-~~~~~Lvl~gD~l~~--~dl~~ll~~h~~---~~a~~tl~~~ 240 (520)
..+.++.. +. ..||++++..++.++... .++.++|++||+++. .++.++++.+.+ .++.+|+.+.
T Consensus 73 --~~~~ii~e---p~----~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~ 143 (274)
T cd02509 73 --PEENIILE---PE----GRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIK 143 (274)
T ss_pred --CCceEEEC---CC----CCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 01223321 11 279999999999887642 346899999999776 457777765543 5677888887
Q ss_pred ecCcccCcceEEEEeCCCC-----CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhh
Q 010006 241 PMDEKRATAFGLMKIDEEG-----RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g-----~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
+. ++.+.||++..|++. +|.+|.|||.......+ .....+++++|+|+|+++.|.+.+++
T Consensus 144 p~--~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 144 PT--RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred ec--CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHHHHHH
Confidence 74 346899999998653 89999999987654322 12245789999999999888777776
Q ss_pred hCCCC-------------CC---ccccchHh---------hhhCCceEEEEEecceEEeCCCHHH
Q 010006 316 KFPGA-------------ND---FGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEA 355 (520)
Q Consensus 316 ~~~~~-------------~~---~~~dil~~---------li~~~~~v~a~~~~g~w~dI~t~~d 355 (520)
..|.. .+ +..+.++. ++++..++.+++.+..|-|+|+..+
T Consensus 209 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 209 HAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 54421 01 11223332 3444667899999999999999764
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.94 E-value=7e-25 Score=213.04 Aligned_cols=222 Identities=24% Similarity=0.351 Sum_probs=172.7
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++++|+++++.+++.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999996 689999999987 99999999999999999999999988888888765 1 1 2
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRATA 249 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 249 (520)
.++.. .+ ..|+++++++++.+++. ..++|++++||+ ++ ..++.++++.|.+.++++++.+.+.. ++..
T Consensus 65 ~~~~~----~~---~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~p~~ 134 (229)
T cd02540 65 EFVLQ----EE---QLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--DPTG 134 (229)
T ss_pred EEEEC----CC---CCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC--CCCC
Confidence 22221 11 27999999999988853 247899999999 44 46799999999887778877776654 4567
Q ss_pred eEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCcccc
Q 010006 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSE 326 (520)
Q Consensus 250 ~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~~~d 326 (520)
|+.+..|++|+|..+.||+....... ..+..++|+|+|+++.|.++++.... ....+..+
T Consensus 135 ~~~~~~~~~~~v~~~~ek~~~~~~~~-----------------~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 135 YGRIIRDGNGKVLRIVEEKDATEEEK-----------------AIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred ccEEEEcCCCCEEEEEECCCCChHHH-----------------hhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 88888887799999999875321110 02478999999999877767765322 13345689
Q ss_pred chHhhhhCCceEEEEEecce--EEeCCCHHHH
Q 010006 327 VIPGATSIGMRVQAYLYDGY--WEDIGTIEAF 356 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g~--w~dI~t~~dy 356 (520)
+++.+++.+.+|+++.++|| |+.|+|+.++
T Consensus 198 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 198 IIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 99999987889999999875 7888898764
No 53
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=1.1e-25 Score=217.37 Aligned_cols=204 Identities=19% Similarity=0.306 Sum_probs=156.9
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.+... .. .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~--~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLS--SK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccccc--CC-c
Confidence 5899999999999999999999999999987 999999999999999999999999999999999886532111 01 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHH--HHhcCCcEEEEEEecCccc-
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA--HRETDADITVAALPMDEKR- 246 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~--h~~~~a~~tl~~~~~~~~~- 246 (520)
.+.+....+ ....|++++++.++.++. ++|++++||++++.++.++++. +...++++++++.......
T Consensus 77 ~v~~~~~~~-----~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 147 (216)
T cd02507 77 IVDVITSDL-----CESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVS 147 (216)
T ss_pred eEEEEEccC-----CCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCC
Confidence 133332222 124899999999988774 6899999999999999999975 4455666666665543222
Q ss_pred ------CcceEEEEeCCC---CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 247 ------ATAFGLMKIDEE---GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 247 ------~~~~g~v~~d~~---g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
+..++++.+|++ .++..+.+++.... .+.+++.++...+. ...++++.++|||+|++++|
T Consensus 148 ~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 148 TEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 567889999987 57888888776532 33356777776654 34567899999999998764
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=7.8e-24 Score=226.18 Aligned_cols=241 Identities=20% Similarity=0.308 Sum_probs=170.1
Q ss_pred eEEEEEeCCCCCCCCccccC-CCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh-HHHHHHHHhhhccCCCCcC
Q 010006 90 VLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~-~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 167 (520)
|.+||||||.||||+|||+. +||+|+|+.|++|||+|+++.|...++++++|+++.... .+.+.+.. +..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~~~------- 72 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-IGK------- 72 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-cCC-------
Confidence 57999999999999999997 899999998755999999999999999999999975443 34444443 110
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc--CcceEEEEeCceecc--ccHHHHHHHH---HhcCCcEEEEEE
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDHLYR--MDYERFIQAH---RETDADITVAAL 240 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~--~~~~~Lvl~gD~l~~--~dl~~ll~~h---~~~~a~~tl~~~ 240 (520)
....++.. +. ..||++++..+..++... .++.++|++||+++. .+|.++++.+ .+.++.+|+...
T Consensus 73 -~~~~~i~E---p~----~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~ 144 (468)
T TIGR01479 73 -LASNIILE---PV----GRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIV 144 (468)
T ss_pred -CcceEEec---cc----ccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 10112211 11 278999998877666332 234589999998664 3488888765 344555666665
Q ss_pred ecCcccCcceEEEEeCC------CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 241 PMDEKRATAFGLMKIDE------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~------~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
+ .++.+.||++..|+ .++|..|.|||....+..+ .....+++++|||+|+++.|.+.++
T Consensus 145 p--~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~~l~ 209 (468)
T TIGR01479 145 P--THPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLAELK 209 (468)
T ss_pred C--CCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHHHHH
Confidence 4 34568999999873 2589999999987654322 1223579999999999877766665
Q ss_pred hhCCC-------------CC----CccccchH---------hhhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 315 DKFPG-------------AN----DFGSEVIP---------GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 315 ~~~~~-------------~~----~~~~dil~---------~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
+..|. .. .+..++++ .++++..++++++.+..|.|+|+++++++...
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 210 KHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 54331 00 11134444 34555678999999999999999999988754
No 55
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.92 E-value=2.7e-24 Score=207.33 Aligned_cols=201 Identities=22% Similarity=0.349 Sum_probs=152.5
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccCh-hHHHHHHHHhhhccCCCCcCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 168 (520)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++.. +.+.+++.+. .|.. ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~-~~~~----~~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSF-PLNL----KQ 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhc-cccc----Cc
Confidence 6899999999999999999999999999986 99999999999999999999999755 5577777652 1211 00
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcc---
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK--- 245 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~--- 245 (520)
....+. .. ++...|++++++.++..+. ++|++++||.+++.++.++++.|++.++.+|+++.+....
T Consensus 75 ~~~~~~-~~-----~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~ 144 (214)
T cd04198 75 KLDEVT-IV-----LDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ 144 (214)
T ss_pred ceeEEE-ec-----CCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc
Confidence 111111 11 1224899999999987663 6899999999999999999999999999999998875421
Q ss_pred --------cCcceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 246 --------RATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 246 --------~~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
....+.++.+|++ +++..+.+... ..+...++..++...++ ...++++.++++|+|++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~--~~~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 145 KGGKGKSKKADERDVIGLDEKTQRLLFITSEED--LDEDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cCCcccccCCCCCceEEEcCCCCEEEEECCHHH--hhhhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence 1234667777765 78887765322 22345667777776664 34567899999999998764
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=1.2e-22 Score=199.82 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=161.6
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|++.+||||+|.|+||. +|+|+|++|+ |||+|+++.+.++++++|+|+++ .+.+.+++.+ +.
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~-~~-------- 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATD--DERIADAVEA-FG-------- 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH-cC--------
Confidence 35889999999999995 6999999997 99999999999999999999885 3566666654 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc-
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE- 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~- 244 (520)
+.++...+ .+..|+++.. .+...++....+.+++++||+ +++ ..+.++++.|.+.+.++++++.+..+
T Consensus 63 ---~~v~~~~~-----~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~ 133 (245)
T PRK05450 63 ---GEVVMTSP-----DHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDA 133 (245)
T ss_pred ---CEEEECCC-----cCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCH
Confidence 22222111 1235665433 344333211236799999999 665 45999999988776777776666522
Q ss_pred ---ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 010006 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (520)
Q Consensus 245 ---~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (520)
.++..++++ +|++|+|++|.|||........ + .....+++.++|+|+|+++++..+.+. .+...
T Consensus 134 ~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~~----------~-~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~ 200 (245)
T PRK05450 134 EEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDAF----------A-DSAPTPVYRHIGIYAYRRGFLRRFVSL-PPSPL 200 (245)
T ss_pred HHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCcc----------c-cccCccccEEEEEEecCHHHHHHHHhC-CCCcc
Confidence 345567765 8888999999999854321000 0 000114689999999999999866542 22211
Q ss_pred Ccc--ccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhc
Q 010006 322 DFG--SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 322 ~~~--~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~ 363 (520)
+.. .+.+ .+++.+.+++++.+++ +|.||||++||..|+..+
T Consensus 201 ~~~~~~~~~-~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EKIESLEQL-RALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccchhHHHH-HHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 111 1122 3556688999999996 999999999999998754
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.89 E-value=1.1e-21 Score=192.25 Aligned_cols=227 Identities=17% Similarity=0.271 Sum_probs=159.2
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++.|||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ +.
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~~-------- 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-FG-------- 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-cC--------
Confidence 3689999999999996 6999999987 9999999999998 99999998864 567777654 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~a~~tl~~~~~~~ 244 (520)
+.++...+ .+..|+++ +..++..+.. ..+.||+++||+ ++. .++..+++.|.+. +.++++++.+.++
T Consensus 63 ---~~~~~~~~-----~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 132 (239)
T cd02517 63 ---GKVVMTSP-----DHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISD 132 (239)
T ss_pred ---CEEEEcCc-----ccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCC
Confidence 22322111 12367764 6666655532 136799999998 554 5699999988766 6778888877643
Q ss_pred c----cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 245 K----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 245 ~----~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
. +...|+ +..|++|+|..|.+++.....+ +. .....+.++|+|+|++++|..+.+. ..
T Consensus 133 ~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~-~~-- 194 (239)
T cd02517 133 EEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAAL-PP-- 194 (239)
T ss_pred HHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhC-CC--
Confidence 1 223344 4567779999998765432100 00 0013488999999999999866542 11
Q ss_pred CCc-cccchH--hhhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 321 NDF-GSEVIP--GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 321 ~~~-~~dil~--~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
.++ ..+.++ .+++.+.+++++..+++|.||||++||.+|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 195 SPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred chhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 112 123333 45666888999999999999999999999874
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=3.6e-22 Score=187.95 Aligned_cols=223 Identities=18% Similarity=0.283 Sum_probs=147.7
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEe-ccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLT-QFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~-~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|+.|+|||||||.|+||+| ..||||+.++|+ ++|+|+|++|.+.|+++++||+ +++.+.+..++.+ |++.
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~-~~~~---- 71 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK-YPFN---- 71 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc-CCcc----
Confidence 4679999999999999998 899999999986 9999999999999999999999 8888888888877 3321
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEEEecCc
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
..++.... .+ ..+++.+|+.+++.+. +.|++++||++|... ++.+++. ... ++.+...+.
T Consensus 72 -----~~iv~N~~--y~---ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~~~e~l~~a----~~~-~li~d~~~~ 132 (239)
T COG1213 72 -----AKIVINSD--YE---KTNTGYSLLLAKDYMD----GRFILVMSDHVYEPSILERLLEA----PGE-GLIVDRRPR 132 (239)
T ss_pred -----eEEEeCCC--cc---cCCceeEEeeehhhhc----CcEEEEeCCEeecHHHHHHHHhC----cCC-cEEEecccc
Confidence 22332111 11 1456899999998876 479999999999988 5555543 122 223322211
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
.....-.....+++|++..+..+-.. .+..++|++.|+++++..+.+- ......+
T Consensus 133 ~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~-~~e~~~~- 187 (239)
T COG1213 133 YVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYEL-LVERSEY- 187 (239)
T ss_pred ccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHH-HhhhhhH-
Confidence 11111112234568999988755442 2367899999999887644321 1111111
Q ss_pred ccchHhhhh-CCceEEEEE--e-cceEEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATS-IGMRVQAYL--Y-DGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~-~~~~v~a~~--~-~g~w~dI~t~~dy~~An~~~l 364 (520)
.+.+... .+.+..-+. + ...|.||+||+|+.++...+.
T Consensus 188 --~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~ 229 (239)
T COG1213 188 --DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLV 229 (239)
T ss_pred --HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHH
Confidence 1122222 112222111 2 247999999999999988654
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.87 E-value=1.8e-20 Score=183.49 Aligned_cols=226 Identities=16% Similarity=0.277 Sum_probs=154.5
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ +.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~~-------- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-FG-------- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-cC--------
Confidence 5789999999999995 4999999997 9999999999998 89999999853 667777764 21
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCC-cEEEEEEecCc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDA-DITVAALPMDE 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a-~~tl~~~~~~~ 244 (520)
++++...+ .+..|++ .+..++..++ .+.|+++.||+ +. ..++.++++.+.+.+. ++++++.+.+.
T Consensus 64 ---~~v~~~~~-----~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PRK13368 64 ---GKVVMTSD-----DHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST 131 (238)
T ss_pred ---CeEEecCc-----cCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC
Confidence 12221111 1125665 5666665552 47899999998 44 5679999998876543 55555555432
Q ss_pred c----cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 245 K----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 245 ~----~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
. ++..+++ .++++|++..+.++|....... ....++.++|+|+|++++|..+ +...+..
T Consensus 132 ~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~---------------~~~~~~~n~giy~~~~~~l~~~-~~~~~~~ 194 (238)
T PRK13368 132 EEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDG---------------ESARYLKHVGIYAFRRDVLQQF-SQLPETP 194 (238)
T ss_pred HHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCC---------------CCCceeEEEEEEEeCHHHHHHH-HcCCCCh
Confidence 1 1344544 4456789999987653211000 0013478999999999999853 3211111
Q ss_pred C-Cccc-cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhh
Q 010006 321 N-DFGS-EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (520)
Q Consensus 321 ~-~~~~-dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~ 362 (520)
. .+.. +++ .+++.+.+++++..+++|+||||++||..++..
T Consensus 195 ~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 195 LEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred hhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1 1222 555 566558889999999999999999999998763
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.86 E-value=1.5e-20 Score=199.36 Aligned_cols=242 Identities=19% Similarity=0.314 Sum_probs=167.8
Q ss_pred ceEEEEEeCCCCCCCCccccC-CCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh-HHHHHHHHhhhccCCCCc
Q 010006 89 SVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~-~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~ 166 (520)
+|.+||||||.||||+|+|+. .||+|+|+.|++|||+++++.+...++.+.+||++.+.. .+.+.+... + . .
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~-~----~-~ 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQL-N----K-L 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhc-C----C-c
Confidence 489999999999999999998 799999997767999999999999888888888876543 344455441 0 0 0
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcC---cceEEEEeCceecccc--HHHHHHHHH---hcCCcEEEE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN---VLEFLVLAGDHLYRMD--YERFIQAHR---ETDADITVA 238 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~---~~~~Lvl~gD~l~~~d--l~~ll~~h~---~~~a~~tl~ 238 (520)
. ..++. +|.. .+|+.++..+..++.... +.-++++++|+++... |.+.++... +.+..+|+.
T Consensus 79 ~---~~ii~---EP~~----rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~G 148 (478)
T PRK15460 79 T---ENIIL---EPAG----RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFG 148 (478)
T ss_pred c---ccEEe---cCCC----CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 0 11221 1222 678988887766665431 3468899999976532 555544332 235556666
Q ss_pred EEecCcccCcceEEEEeCCC---------CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 239 ALPMDEKRATAFGLMKIDEE---------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 239 ~~~~~~~~~~~~g~v~~d~~---------g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
..| ..+.+.||++..++. .+|.+|.|||+...+..+. ....|+|++|||+|+.+.+
T Consensus 149 I~P--t~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 149 IVP--DLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRAGRY 213 (478)
T ss_pred cCC--CCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeHHHH
Confidence 665 446789999987642 2799999999998776542 3456899999999999887
Q ss_pred HHHHhhhCCCC--------------CCc--c-ccchHh---------hhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 310 LNLLRDKFPGA--------------NDF--G-SEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 310 ~~ll~~~~~~~--------------~~~--~-~dil~~---------li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
.+.++++.|.. .++ . .+.++. ++++..++.+.+.+-.|-|+|+..++++...
T Consensus 214 l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~~ 291 (478)
T PRK15460 214 LEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEISA 291 (478)
T ss_pred HHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhhc
Confidence 76666554410 011 0 122222 2333556888999888999999999988653
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=6.1e-20 Score=179.73 Aligned_cols=245 Identities=23% Similarity=0.323 Sum_probs=171.0
Q ss_pred ceEEEEEeCCCCCCCCccccC-CCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhH-HHHHHHHhhhccCCCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSAS-LNRHLSRAYASNMGGY 165 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~-~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~-i~~~l~~~~~~~~~~~ 165 (520)
+|++||||||.|||||||++. .||++|++.|...|++.+++.+.. .+.++++|||+.+... +.+.+.+- +..
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~-----~~~ 75 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI-----DIE 75 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh-----hhc
Confidence 378999999999999999865 999999997767999999999998 6789999999866543 34455441 000
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhh-cCcceEEEEeCceecccc--HHHHHHHHH---hcCCcEEEEE
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDHLYRMD--YERFIQAHR---ETDADITVAA 239 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~-~~~~~~Lvl~gD~l~~~d--l~~ll~~h~---~~~a~~tl~~ 239 (520)
...+ + ++ +|.. ..|+-++..+.-.+.. .++.-++|++.||++... +.+.++... +.+..+|+..
T Consensus 76 ~~~~-i-ll----EP~g----RnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI 145 (333)
T COG0836 76 NAAG-I-IL----EPEG----RNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGI 145 (333)
T ss_pred cccc-e-Ee----ccCC----CCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 0011 1 22 1233 5689998877655443 333458899999976543 665555432 3455666666
Q ss_pred EecCcccCcceEEEEeCCC------CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHH
Q 010006 240 LPMDEKRATAFGLMKIDEE------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL 313 (520)
Q Consensus 240 ~~~~~~~~~~~g~v~~d~~------g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll 313 (520)
.| ..+++.||+++..+. .+|.+|.|||+...++.+. ..+.|++++|+|+|+...+.+.+
T Consensus 146 ~P--t~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l~e~ 210 (333)
T COG0836 146 PP--TRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFLEEL 210 (333)
T ss_pred CC--CCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHHHHH
Confidence 65 446799999988542 3799999999998876553 34568999999999998777666
Q ss_pred hhhCCC-----------CCCc--c---ccc--------hHh-hhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 314 RDKFPG-----------ANDF--G---SEV--------IPG-ATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 314 ~~~~~~-----------~~~~--~---~di--------l~~-li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
+.+.|. ..++ . .+. +.. +.++..++.+++.+-.|-|+|+...+++....-
T Consensus 211 ~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~d 285 (333)
T COG0836 211 KKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDKD 285 (333)
T ss_pred HhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhcC
Confidence 655442 1011 0 111 111 234467899999998999999999998876543
No 62
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=3.8e-18 Score=154.24 Aligned_cols=218 Identities=13% Similarity=0.167 Sum_probs=148.2
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.|||||||.||||.|||...||+|+.|.|+ |||+++|+.|.++||.+|+||+|+.++++ +||.+.|+
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999997 99999999999999999999999998876 67877664
Q ss_pred eEEEee-cccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 170 FVEVLA-AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 170 ~v~vl~-~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
|.++. +... .-....++..++++++ +..++.+|..+..++ ...+. ..+--. .+.. ...+
T Consensus 69 -vtLvyN~kY~------~yNn~ySlyla~d~l~-----ntYiidsDnyl~kNi---f~~~~-~~S~Yf-av~~---~~~t 128 (231)
T COG4750 69 -VTLVYNPKYR------EYNNIYSLYLARDFLN-----NTYIIDSDNYLTKNI---FLTKE-SHSKYF-AVYR---SGKT 128 (231)
T ss_pred -eEEEeCchHH------hhhhHHHHHHHHHHhc-----ccEEeccchHhhhhh---hhcCc-ccceEE-EEEe---cCCC
Confidence 33332 1110 1346789999999987 467889998665552 11111 111111 1111 1234
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHH---HHHhhhCC---CCCC
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML---NLLRDKFP---GAND 322 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~---~ll~~~~~---~~~~ 322 (520)
+-.++..+.+|+|+++.-... .....+|+..|++..-. .+++...- ...-
T Consensus 129 nEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~ 184 (231)
T COG4750 129 NEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKL 184 (231)
T ss_pred ceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchhhhH
Confidence 455677888999998863222 23667899999865433 34443321 1111
Q ss_pred ccccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~l 364 (520)
+-.++...-++ ...+++-.+++ -.++++++++|.+....++
T Consensus 185 yWd~v~~~ni~-~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 185 YWDTVPMENIK-ELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred HHHHHHHHHHH-HHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 22444545555 55666666654 5899999999987766543
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.76 E-value=5.8e-17 Score=163.08 Aligned_cols=235 Identities=16% Similarity=0.188 Sum_probs=157.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+|| +++.+++.+++.+ ++
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~-~~-------- 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCRG-FG-------- 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHH-cC--------
Confidence 46889999999999996 4999999997 999999999998765444333 3567788777754 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEE--EEEecC
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITV--AALPMD 243 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl--~~~~~~ 243 (520)
++++...+ . +..|++++ ..++..++. ..+.++++.||. +.. ..+.++++.+.+. .++++ ++.+..
T Consensus 109 ---v~vi~~~~--~---~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~ 177 (293)
T PLN02917 109 ---ADVIMTSE--S---CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLK 177 (293)
T ss_pred ---CEEEeCCc--c---cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecC
Confidence 22221111 1 12566555 677777752 247899999999 565 4599999988654 33333 333334
Q ss_pred cccCcceEEEE--eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---
Q 010006 244 EKRATAFGLMK--IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--- 318 (520)
Q Consensus 244 ~~~~~~~g~v~--~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--- 318 (520)
.+++.+||.++ .|++|++..|..++-.+..+. ++ ......+.++|||.|+.+.|. .+.+-.+
T Consensus 178 ~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~--~~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~ 244 (293)
T PLN02917 178 PEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KV--NPQFPYLLHLGIQSYDAKFLK-IYPELPPTPL 244 (293)
T ss_pred HHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cc--ccccceEEEEEEEEeCHHHHH-HHHcCCCCcc
Confidence 45678899886 677788777764422111000 00 011235889999999999998 5443211
Q ss_pred CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhccc
Q 010006 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 319 ~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~ 365 (520)
....+.+|+. +++.|.++.++..+....-|||++|+..++..+..
T Consensus 245 e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 245 QLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred cchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 2234456665 55669999999887667799999999999887643
No 64
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.68 E-value=2.9e-15 Score=145.60 Aligned_cols=219 Identities=21% Similarity=0.223 Sum_probs=147.0
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccCh-hHHHHHHHHhhhccCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~ 164 (520)
|+++.+||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+.+...
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK------- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-------
Confidence 457899999999999995 3479999999997 99999999999865 899999998665 3333322110
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEec
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPM 242 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~ 242 (520)
...+.++. .+ .+.+++++.++..+++ .+.++++.||. +++. .+.++++.+.+.+ .++.+.+.
T Consensus 70 ---~~~~~~~~-----~~----~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~ 133 (227)
T PRK00155 70 ---DPKVTVVA-----GG----AERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV 133 (227)
T ss_pred ---CCceEEeC-----Cc----chHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec
Confidence 01122221 11 3468999999887742 46899999999 6654 4999999886653 33444443
Q ss_pred CcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 243 ~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
.+ .+.. ++++|.+.++ +..... ...-+.|.|+.+.|.+++..... ...
T Consensus 134 ~~----~~~~--v~~~g~~~~~---~~r~~~----------------------~~~~~p~~f~~~~l~~~~~~~~~-~~~ 181 (227)
T PRK00155 134 KD----TIKR--SDDGGGIVDT---PDRSGL----------------------WAAQTPQGFRIELLREALARALA-EGK 181 (227)
T ss_pred cc----cEEE--EcCCCceeec---CChHHh----------------------eeeeCCccchHHHHHHHHHHHHh-cCC
Confidence 21 1222 2545666655 222111 22334889999999887764322 223
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+..|....+.+.+.++..+..+..+++|+|++||..+...+.
T Consensus 182 ~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 182 TITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 345555555556788988887777889999999999877553
No 65
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.67 E-value=2.7e-15 Score=144.72 Aligned_cols=211 Identities=19% Similarity=0.220 Sum_probs=145.3
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCCcCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 168 (520)
.|||||||.|+||+. ..||+|++++|+ |||+|+++++.++ ++++|+|+++++. +.+..++...
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~----------- 65 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR----------- 65 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------
Confidence 379999999999973 479999999997 9999999999998 7999999998654 3444333320
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
..++++.. + .+..++++.++..++ ..+.++++.||+ +++. .+..+++.+.+. ++++++.+..
T Consensus 66 ~~~~~~~~-----~----~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~--- 129 (217)
T TIGR00453 66 AVPKIVAG-----G----DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA--- 129 (217)
T ss_pred CcEEEeCC-----C----chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc---
Confidence 01222211 1 234588998887762 247899999999 6664 488999987653 3444444432
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcccc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~d 326 (520)
.++..+|++|.++.+.++. .. +...+ .|.|+.+.|.+++...... ..+..|
T Consensus 130 ---~~v~~~~~~g~~~~~~~r~---~~---------------------~~~~~-p~~f~~~~l~~~~~~~~~~-~~~~~d 180 (217)
T TIGR00453 130 ---DTLKRVEADGFIVETVDRE---GL---------------------WAAQT-PQAFRTELLKKALARAKEE-GFEITD 180 (217)
T ss_pred ---ceEEEEcCCCceeecCChH---He---------------------EEEeC-CCcccHHHHHHHHHHHHhc-CCCCCc
Confidence 2344556667787776521 11 13333 7899999998777532222 222356
Q ss_pred chHhhhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
....+.+.+.++..+..+..+++|+|++||..+..
T Consensus 181 ~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 181 DASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred HHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 66666666889999888877889999999988764
No 66
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.67 E-value=2.8e-15 Score=144.52 Aligned_cols=213 Identities=19% Similarity=0.278 Sum_probs=145.8
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+.. +.. . .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~------~-~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGL------S-K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-ccc------C-C
Confidence 589999999999984 279999999997 99999999999976 899999998776554443321 110 0 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
.+.++.. + .+..++++.++..++....+.++++.||+ +++.+ +..+++.+.+.+ ..+...+...
T Consensus 70 ~~~~~~~-----~----~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~--- 135 (218)
T cd02516 70 VVKIVEG-----G----ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVTD--- 135 (218)
T ss_pred CeEEECC-----c----hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEeccc---
Confidence 1222211 1 34578899999877422357899999999 66644 999999886544 3333333221
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~di 327 (520)
++...|++|.+.++.+. ... ....++ ++|+.+.|.+++...... ..+..|.
T Consensus 136 ---~~~~~~~~g~~~~~~~r---~~~---------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~ 186 (218)
T cd02516 136 ---TIKRVDDDGVVVETLDR---EKL---------------------WAAQTP-QAFRLDLLLKAHRQASEE-GEEFTDD 186 (218)
T ss_pred ---cEEEecCCCceeecCCh---HHh---------------------hhhcCC-CcccHHHHHHHHHHHHhc-CCCcCcH
Confidence 12335667888887653 111 144556 899999999887654332 2344666
Q ss_pred hHhhhhCCceEEEEEecceEEeCCCHHHHHH
Q 010006 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYN 358 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g~w~dI~t~~dy~~ 358 (520)
..-+.+.+.++..+..+..-+||+|++||..
T Consensus 187 ~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 187 ASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred HHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 6666666778888877666679999999954
No 67
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.65 E-value=2e-14 Score=140.72 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=143.1
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
+||+|+|.|+||. +|+|++++|+ |||+|+++++..+++++|+|++. .+.+.+++.+ +. +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~-~g-----------~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATD--DESVAQTCQK-FG-----------I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH-cC-----------C
Confidence 7999999999995 6999999997 99999999999988999999885 3456655544 11 1
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCcccC--
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRA-- 247 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~~~-- 247 (520)
+++...+ . ...| .+.+..+...+.....+.++++.||. +.+.+ +.++++.+.+...+++.++.+..+...
T Consensus 61 ~~v~~~~--~---~~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~ 134 (238)
T TIGR00466 61 EVCMTSK--H---HNSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAF 134 (238)
T ss_pred EEEEeCC--C---CCCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHcc
Confidence 2221111 1 1134 34555554443211246789999999 66654 899999886656777777777543111
Q ss_pred -cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc-c
Q 010006 248 -TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG-S 325 (520)
Q Consensus 248 -~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~-~ 325 (520)
.+...+..|.+|+...|...+.......+. ...+|+. ..++...|+|.|++++|.++...........+ -
T Consensus 135 ~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~-----~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~l 206 (238)
T TIGR00466 135 NPNAVKVVLDSQGYALYFSRSLIPFDRDFFA-----KRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKL 206 (238)
T ss_pred CCCceEEEeCCCCeEEEecCCCCCCCCCccc-----ccccccc---cceeEEEEEEeCCHHHHHHHHhCCCCcccccchh
Confidence 123334446678877776543211100000 0011111 13577899999999999977653221111111 1
Q ss_pred cchHhhhhCCceEEEEEecce-EEeCCCHHHH
Q 010006 326 EVIPGATSIGMRVQAYLYDGY-WEDIGTIEAF 356 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~-w~dI~t~~dy 356 (520)
|-|. +++.|++|++...+.. -..|||++|+
T Consensus 207 eqlr-~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 207 EQLR-VLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred HHHh-hhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 2233 3445999999998765 4699999997
No 68
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.65 E-value=1.1e-14 Score=151.06 Aligned_cols=208 Identities=16% Similarity=0.188 Sum_probs=144.5
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++|+|+++++...+.+.+...+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~------- 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI------- 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-------
Confidence 677899999999999995 3589999999987 99999999999987 79999999876554433322211
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecC
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
..+.++. .+ .+..++++.++..+++ +.+++..||. +++.+ +..+++...+ .++++...++.
T Consensus 72 ---~~v~~v~-----gG----~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~pv~ 134 (378)
T PRK09382 72 ---KFVTLVT-----GG----ATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALPVA 134 (378)
T ss_pred ---CeEEEeC-----CC----chHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEEec
Confidence 1122221 11 3467899999988753 6899999998 66655 7888887654 35667777754
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
+ ...|+...+|. ..+..+ ++|+... .+.+.+..+ ...+
T Consensus 135 D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~----~~~~- 172 (378)
T PRK09382 135 D--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD----GRGD- 172 (378)
T ss_pred c--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh----CCCC-
Confidence 3 45565445553 355444 6665432 222222221 1122
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
.+|..+.+...|.+|.++..+..|.+|.+|+||..++..+.
T Consensus 173 ~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 173 FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 36777777777999999999999999999999999987654
No 69
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.58 E-value=1.2e-13 Score=134.54 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=143.4
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCCc
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (520)
++.+||||||.|+||+ ...||+|++++|+ |||+|+++++..+ .+++|+|+++... ..+.+.+.+ +.+.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~~----- 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LNVA----- 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cCcC-----
Confidence 4789999999999997 3479999999997 9999999999875 4899999997543 223333433 2210
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
...++++. .+ .+..++++.++..+++ .+.++++.||. +.+.+ +.++++.+.+.++. +.+.+..
T Consensus 72 -~~~~~~v~-----~g----~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~- 136 (230)
T PRK13385 72 -DQRVEVVK-----GG----TERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVK- 136 (230)
T ss_pred -CCceEEcC-----CC----chHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEecc-
Confidence 01123321 11 2345899999887753 35688889999 66655 88999988765433 3333322
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
+ .++...++.+....+ .... +..-+.|.|+.+.|.+..+..... ..+.
T Consensus 137 ----d--ti~~~~~~~~~~~i~---r~~~----------------------~~~qtpq~f~~~~l~~~~~~~~~~-~~~~ 184 (230)
T PRK13385 137 ----D--TVKRVKDKQVIETVD---RNEL----------------------WQGQTPQAFELKILQKAHRLASEQ-QFLG 184 (230)
T ss_pred ----c--eEEEEcCCeeEeccC---HHHH----------------------hhhcCCceeeHHHHHHHHHHHHhc-CCCc
Confidence 1 122222354433322 2111 223458899998888776632212 2234
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+|....+.+.+.++..++-+...+.|+|++|+..|...+.
T Consensus 185 td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 185 TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 5655555556889999988888999999999999977653
No 70
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.58 E-value=2.5e-13 Score=131.33 Aligned_cols=214 Identities=21% Similarity=0.279 Sum_probs=136.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ +.+.+.+++.+ +..
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~-~~~------- 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARK-YGA------- 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH-hCC-------
Confidence 3679999999999995 4999999997 99999999999987 78888776 44556555543 110
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc--CcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~--~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
. +.+........+ ..|+.++++.++..++.. ..+.++++.||+ +.. .++.++++.+.+.+++.++.+.+..
T Consensus 64 -~-~~~~~~~~~~~~---~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 64 -E-VPFLRPAELATD---TASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred -C-ceeeCChHHCCC---CCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 0 111111000011 147889999999877532 136899999999 444 5699999998877778777766643
Q ss_pred cccCcceEEEEeCCCC-CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 244 EKRATAFGLMKIDEEG-RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g-~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
+ ...++.. .+++| .+..+.++....... ....+..++|+|+++++.+.+.. .
T Consensus 139 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~q~----------------~~~~~~~n~~~y~~~~~~~~~~~-------~- 191 (223)
T cd02513 139 R--FPWRALG-LDDNGLEPVNYPEDKRTRRQD----------------LPPAYHENGAIYIAKREALLESN-------S- 191 (223)
T ss_pred c--CcHHhee-eccCCceeccCcccccCCcCC----------------ChhHeeECCEEEEEEHHHHHhcC-------C-
Confidence 2 2223222 22223 222221111100000 00124667899999998775311 1
Q ss_pred ccccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhh
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANL 361 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~ 361 (520)
+ -+.++..+..+. .-.||+|++||..+..
T Consensus 192 ~----------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 192 F----------FGGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred c----------cCCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 1 167888887775 5899999999988754
No 71
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.58 E-value=1.5e-14 Score=132.52 Aligned_cols=121 Identities=24% Similarity=0.338 Sum_probs=94.5
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~---------~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY---------G---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT---------T---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc---------C---c
Confidence 7999999999998 49999999987 999999999999999999999987 4555555331 1 3
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAAL 240 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~ 240 (520)
+++.. +.|..|++++++.++..+. ..++|++++||+ +++. .+..+++.+.+.++++++...
T Consensus 61 ~~v~~------~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVD------PEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-------STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEe------ccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 33322 2234899999999998773 358999999999 4454 499999998877787765554
No 72
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.56 E-value=3.2e-14 Score=133.58 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=96.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..++.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999985 79999999997 9999999999999999999999988888888876521
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEe
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALP 241 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~ 241 (520)
..+.. . +..|...++..++..+. ..++|++++||+ +.. ..+..+++.+...+..+..++.+
T Consensus 65 -~~~~~--~------~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 -KDYKN--A------SGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -cEEEe--c------CCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11221 1 12678888888886543 247899999999 444 55999999887666555444443
No 73
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.55 E-value=1.3e-13 Score=129.57 Aligned_cols=119 Identities=19% Similarity=0.324 Sum_probs=88.9
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|+++++.+++.+.+...+ + +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~----------~-v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANHS----------N-I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccCC----------C-e
Confidence 7999999999998 58999999987 9999999999998999999999987766544433211 1 3
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADI 235 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~ 235 (520)
.++. ++.|..|+.++++.++.+ . ...+.+++++||+ ++. ..+..+++.+...+.++
T Consensus 65 ~~v~------~~~~~~g~~~si~~~l~~-~-~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 65 TLVH------NPQYAEGQSSSIKLGLEL-P-VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEEE------CcChhcCHHHHHHHHhcC-C-CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 3332 122346889999998862 1 1247899999999 555 45888988876555443
No 74
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.54 E-value=9.5e-14 Score=137.76 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=55.2
Q ss_pred ccccccCCCc-ceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCc
Q 010006 447 RRFLAAKGSV-PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 518 (520)
Q Consensus 447 ~~~~~~~~~~-~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gt 518 (520)
.+|.|+++++ .+.||++++|. .+.|++||+||++|.|.+++++.+.+.+|++|.|+... ..|++++.|.+.+
T Consensus 213 anT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~ 291 (338)
T COG1044 213 ANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARS 291 (338)
T ss_pred ccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEeccc
Confidence 4566666644 45677777776 47889999999999999999999999999999999872 4466666665544
No 75
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.52 E-value=1.1e-13 Score=127.66 Aligned_cols=119 Identities=14% Similarity=0.258 Sum_probs=93.5
Q ss_pred CccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCC
Q 010006 378 APIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 455 (520)
Q Consensus 378 ~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 455 (520)
..+...+.+.+.+.+. .+++||++|.|++ +.|. +++||++|.|++++.|.+++++++
T Consensus 18 v~ig~~~~I~~~a~i~----~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~----------------- 76 (163)
T cd05636 18 VWIGEGAIVRSGAYIE----GPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG----------------- 76 (163)
T ss_pred eEEcCCCEECCCCEEe----CCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-----------------
Confidence 3444444444444432 4688999999987 8887 699999999999999998888765
Q ss_pred cceeeCCCCEEcceEECCCCEECCCcEEec------------------------CCCcCCcccccCCeEEccCeEEEcCC
Q 010006 456 VPIGIGKNSHIKRAIIDKNARIGDNVKIVN------------------------SDSVQEAARETDGYFIKSGIVTIIKD 511 (520)
Q Consensus 456 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~------------------------~~~v~~~~~~~~~~~I~~~~v~Ig~~ 511 (520)
+.|++++.+.+++|+++++|++++.+.+ ..-+++.++++.++.|.++ ++||++
T Consensus 77 --~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig~~ 153 (163)
T cd05636 77 --TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIGPG 153 (163)
T ss_pred --CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEECCC
Confidence 5899999999999999999999999865 2455666667777777777 889999
Q ss_pred CEeCCCccC
Q 010006 512 ALIPSGTII 520 (520)
Q Consensus 512 ~~i~~gtvi 520 (520)
++|++|++|
T Consensus 154 ~~i~agsvV 162 (163)
T cd05636 154 SWVYPGCVV 162 (163)
T ss_pred CEECCCcEe
Confidence 999999875
No 76
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.52 E-value=3.3e-14 Score=138.05 Aligned_cols=96 Identities=24% Similarity=0.208 Sum_probs=53.9
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCC---ccccCCC-ccccCCCcCCCceeecccccce
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDF---SFYDRSA-PIYTQPRYLPPSKMLDADVTDS 400 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~---~~~~~~~-~i~~~~~~~~~~~i~~~~i~~~ 400 (520)
.|.++.+++.+ ++.++|||.|+ ++|+++|..++....... ....+.. .+...+.+.|.+.+. .++
T Consensus 31 ~~~~~~~~~~~----~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~----g~v 99 (231)
T TIGR03532 31 PESIKKFGSGH----SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIR----DQV 99 (231)
T ss_pred chheEEEecCC----cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEe----CCe
Confidence 68888888744 88999999999 999999999987642100 0111111 112222333333332 345
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEc
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~ 431 (520)
.||++|.|+. +.|. +++||++|.|++++.|.
T Consensus 100 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~ 132 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLG 132 (231)
T ss_pred EECCCCEEecCcccCCCeEECCCCEEccccccC
Confidence 5555555554 4443 45555555555555443
No 77
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.50 E-value=1.2e-12 Score=121.46 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=132.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
+.++.+||||||.|+||+ .+|.|+|+.|+ |+++++++...++++++++||+++...+....+...
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------- 67 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------- 67 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc---------
Confidence 356899999999999999 89999999997 999999999999999999999998733322222221
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
..+.++ .+++|.+|.+.|++.++..+.... +.++++.||+ +...++.++++.++..+ . ...+
T Consensus 68 --~~~~~v------~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v~p--- 131 (199)
T COG2068 68 --LGVTVV------VNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AVRP--- 131 (199)
T ss_pred --CCeEEE------eCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c---eeee---
Confidence 113333 356778999999999998876422 5899999999 44567999999887652 2 1111
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
.| .|. . .+-.+|+++.|.++.+ .+ .|
T Consensus 132 ----~~-------~g~-------r------------------------------G~Pv~~~~~~~~~l~~--l~--GD-- 157 (199)
T COG2068 132 ----VY-------GGA-------R------------------------------GHPVLLSKDLFPALAR--LS--GD-- 157 (199)
T ss_pred ----ec-------cCC-------c------------------------------CCceeechhHHHHHhh--cC--Cc--
Confidence 11 010 0 1122567777765433 11 11
Q ss_pred ccchHhhhh-CCceEEEEEe-cceEEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATS-IGMRVQAYLY-DGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~-~~~~v~a~~~-~g~w~dI~t~~dy~~An~~~l 364 (520)
.-...+++ .+..+..+.. .+.-.|||||+||..++..+.
T Consensus 158 -~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 158 -VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred -hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 11344444 2445555555 578999999999999987653
No 78
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.48 E-value=3.8e-13 Score=127.54 Aligned_cols=122 Identities=24% Similarity=0.275 Sum_probs=76.6
Q ss_pred ccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEEC-Ccccccccc-ccccccCCCcceeeCCCCEEcceEE
Q 010006 395 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-RRFLAAKGSVPIGIGKNSHIKRAII 471 (520)
Q Consensus 395 ~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~-~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~~~ii 471 (520)
+.|.++.|+++|.|+. +.+.+++||+++.|++++.|.....++ +.......+ +++.+++++ .|++.+.+.+++|
T Consensus 46 ~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~---~i~~~~~i~~~~I 122 (193)
T cd03353 46 CVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGS---KANHLSYLGDAEI 122 (193)
T ss_pred cEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCC---EecccceecccEE
Confidence 3444556666666665 666666666666666666665333222 221111111 345566665 5667777778899
Q ss_pred CCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 472 DKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 472 ~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++++.||+++.+.+.++ +++.++++.++.|.++ ++||++++|++|++|
T Consensus 123 g~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 123 GEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred CCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 99999999998877554 3444555555555555 889999999999875
No 79
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.48 E-value=4.4e-13 Score=125.44 Aligned_cols=121 Identities=24% Similarity=0.387 Sum_probs=91.5
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+...++++|+|+++++...+.+++.. + +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~----------~ 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG-L----------P 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC-C----------C
Confidence 4689999999999985 9999999987 99999999999999999999998876655444322 0 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcE
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADI 235 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~ 235 (520)
+.++.. +.+..|++++++.++..+.. ..+.+++++||+ +++ ..+..+++.+...++++
T Consensus 64 -~~~~~~------~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 64 -VVVVIN------PDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred -eEEEeC------CChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 222221 12237899999999987752 357899999999 555 45888888876555544
No 80
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.48 E-value=5.3e-13 Score=136.13 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=47.1
Q ss_pred eCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 460 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 460 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
||+++.|. .+.|++|++||++|.|.+++++....++|++++|+.+. ++||++++|+++++|
T Consensus 220 Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 220 IGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 44444554 46778888888999888888888888888888887662 678888888888764
No 81
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.47 E-value=5.8e-12 Score=124.01 Aligned_cols=218 Identities=13% Similarity=0.091 Sum_probs=139.5
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHH-HHHHHHhhhccCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASL-NRHLSRAYASNMGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i-~~~l~~~~~~~~~~ 164 (520)
++++.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.. .++++|+|+++++.... ...+.+ +.
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-~~----- 91 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-ID----- 91 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-cC-----
Confidence 456889999999999997 3579999999997 999999999998 48999999998764333 333322 11
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCc--e-ecccc-HHHHHHHHHhcCCcEEEEEE
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGD--H-LYRMD-YERFIQAHRETDADITVAAL 240 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD--~-l~~~d-l~~ll~~h~~~~a~~tl~~~ 240 (520)
.. +.+.. .+ .+..++++.++..++. +..+|+.+| . +...+ +..+++...+.+ ..+...
T Consensus 92 ---~~-i~~v~-----gg----~~r~~SV~~gl~~l~~---~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~ 153 (252)
T PLN02728 92 ---VP-LKFAL-----PG----KERQDSVFNGLQEVDA---NSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGV 153 (252)
T ss_pred ---Cc-eEEcC-----CC----CchHHHHHHHHHhccC---CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEee
Confidence 01 22211 11 2356889999987752 234455566 4 66655 788888776654 335555
Q ss_pred ecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
+..+ - +...++++.|. +.+..... +..-.-..|+.+.|.+.++....+.
T Consensus 154 ~~~d-----t-ik~v~~~~~v~---~t~~R~~l----------------------~~~QTPQ~F~~~~l~~a~~~~~~~~ 202 (252)
T PLN02728 154 PVKA-----T-IKEANSDSFVV---KTLDRKRL----------------------WEMQTPQVIKPELLRRGFELVEREG 202 (252)
T ss_pred cchh-----h-EEEecCCCcee---eccChHHe----------------------EEEeCCccchHHHHHHHHHHHHhcC
Confidence 5322 1 12234445443 33444432 2222234677777776665432222
Q ss_pred CCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 321 ~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
...+|....+...|.+|..+.-+..-+-|.||+|+..+...+.
T Consensus 203 -~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 203 -LEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred -CCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 2235555555556888888777777899999999998887554
No 82
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.47 E-value=3.1e-13 Score=133.72 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=73.0
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~ 437 (520)
.++++++.+...+.+.|.+.+. .++.||++|.|++ |.|. ++.||++|.|+++|.|.. .+.++
T Consensus 6 a~I~~~a~ig~~~~I~p~~~I~----~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG 81 (254)
T cd03351 6 AIVDPGAKIGENVEIGPFCVIG----PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIG 81 (254)
T ss_pred CEECCCCEECCCCEECCCcEEC----CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEEC
Confidence 3455555565555555555543 3455666666665 5555 466666666666665542 22222
Q ss_pred -CccccccccccccccCCCc----ceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----E
Q 010006 438 -ADYYETDADRRFLAAKGSV----PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----V 506 (520)
Q Consensus 438 -~~~~~~~~~~~~~~~~~~~----~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v 506 (520)
++.... .+.+..+.. .+.||+++.|. ++.|++++.||++|.|.+...+.+.+.+++++.|+.+. +
T Consensus 82 ~~~~Ig~----~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v 157 (254)
T cd03351 82 DNNTIRE----FVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFC 157 (254)
T ss_pred CCCEECC----ccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCc
Confidence 111111 111111100 14555555554 45555555555555555555555555555555555441 7
Q ss_pred EEcCCCEeCCCccC
Q 010006 507 TIIKDALIPSGTII 520 (520)
Q Consensus 507 ~Ig~~~~i~~gtvi 520 (520)
+||++++|+++++|
T Consensus 158 ~Ig~~~~Ig~~s~V 171 (254)
T cd03351 158 RIGRHAMVGGGSGV 171 (254)
T ss_pred EECCCCEECcCCEE
Confidence 78888888888764
No 83
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.46 E-value=3.2e-12 Score=121.06 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=83.6
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+. .++++|+|+++.+.+.+ .. +.
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~-~~------- 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA-FG------- 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh-cC-------
Confidence 567999999999999995 279999999987 99999999998 67999999987543322 11 00
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHh
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRE 230 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~ 230 (520)
+.++.... .+..|+.++++.++...+ .+.+++++||+ +++.+ +..+++.+.+
T Consensus 63 ----~~~v~~~~-----~~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 63 ----LPVIPDSL-----ADFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred ----CcEEeCCC-----CCCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 12222110 112688899998887543 47899999999 66654 8888876543
No 84
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.46 E-value=1.1e-11 Score=120.24 Aligned_cols=213 Identities=17% Similarity=0.193 Sum_probs=140.9
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCe
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (520)
|||+|+|.++||. .|.++|++|+ |||.|+++.+.+++ +++|+|.+ +.+++.+...+ +.. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVst--d~~~i~~~a~~-~g~--------~- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVST--DDEEIAEVAKS-YGA--------S- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH-cCC--------E-
Confidence 7999999999995 4999999997 99999999999987 67777755 34556555443 211 0
Q ss_pred EEEeecccCCCCCCCccCcHHHHHHHHHHhhh-cCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 171 v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~-~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.+...... ..+..|+.+++..++..++. ...+.++++.+|. +.. .++..+++.+.+.+++..+.+.+...++
T Consensus 63 v~~~r~~~l---~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~- 138 (222)
T TIGR03584 63 VPFLRPKEL---ADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPI- 138 (222)
T ss_pred eEEeChHHH---cCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCCh-
Confidence 111111110 11136888999999987753 2247799999999 555 5699999999887788777776643222
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~di 327 (520)
+.....+++|++..+......... +. ....|..+.++|+++++.|.+ ...+.
T Consensus 139 --~~~~~~~~~g~~~~~~~~~~~~~r--------------Qd-~~~~y~~nga~y~~~~~~~~~--------~~~~~--- 190 (222)
T TIGR03584 139 --QRAFKLKENGGVEMFFPEHFNTRS--------------QD-LEEAYHDAGQFYWGKSQAWLE--------SGPIF--- 190 (222)
T ss_pred --HHheEECCCCcEEecCCCcccCCC--------------CC-CchheeeCCeEEEEEHHHHHh--------cCCcc---
Confidence 112244556776665422111000 00 112356789999999987652 11111
Q ss_pred hHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhh
Q 010006 328 IPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLG 362 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~ 362 (520)
+.++..|..+. ..+||||++|+..|...
T Consensus 191 -------~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 191 -------SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred -------CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 56778887775 58999999999988664
No 85
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.43 E-value=6.8e-13 Score=131.67 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=87.8
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~ 437 (520)
.+++|.+.|..++.+.|.+.+. .++.||++|.|+. +.|. ++.||++|.|++++.|.. .+.++
T Consensus 9 a~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 9 AIVEPGAKIGENVEIGPFCVIG----PNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred CEECCCCEECCCCEECCCeEEC----CCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 4566666666666666666554 4677788888876 6666 677777777777777754 23333
Q ss_pred C-ccccccccccccccCCCc----ceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----E
Q 010006 438 A-DYYETDADRRFLAAKGSV----PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----V 506 (520)
Q Consensus 438 ~-~~~~~~~~~~~~~~~~~~----~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v 506 (520)
+ +.... ++.|..+.+ .+.||+++.|. ++.|+++|.||+++.+.+.+.+.++.+++++++|+.+. +
T Consensus 85 ~~~~I~e----~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v 160 (262)
T PRK05289 85 DNNTIRE----FVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFV 160 (262)
T ss_pred CCCEECC----CeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCC
Confidence 2 11111 111111110 13566666664 56666677777777777776666777777777776552 6
Q ss_pred EEcCCCEeCCCccC
Q 010006 507 TIIKDALIPSGTII 520 (520)
Q Consensus 507 ~Ig~~~~i~~gtvi 520 (520)
+||++++|++||+|
T Consensus 161 ~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 161 RIGAHAMVGGMSGV 174 (262)
T ss_pred EECCCCEEeeecce
Confidence 78888888888875
No 86
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.43 E-value=9.4e-13 Score=130.27 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=36.5
Q ss_pred eeCCCCEE-cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 459 GIGKNSHI-KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 459 ~Ig~~~~i-~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.|+++++| ++|+|++++.|++++.+.....+++.+.++.++.|..+ ++||++++|+++++|
T Consensus 109 ~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 109 LLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF-VRIGRYAMIGGLSAV 170 (254)
T ss_pred EECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC-cEECCCCEEeeeeeE
Confidence 34444444 34555555555555555555555555555555555555 788888888888865
No 87
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.43 E-value=1.2e-12 Score=123.25 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=110.5
Q ss_pred CccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEccc-------------EE
Q 010006 371 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT-------------LL 435 (520)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~-------------~i 435 (520)
..+++|.+.|..++.+.|.+.+. +++.|++|++|+. +.|+ .+.||++++|.+++.|+.- +|
T Consensus 9 TAiIe~gA~ig~~V~IGpf~iIg----~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 9 TAIIEPGAEIGEDVKIGPFCIIG----PNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ceeeCCCCCcCCCCEECceEEEC----CCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 46677888888888888887775 6788999999998 8887 7899998866555555221 11
Q ss_pred ECCcccccccc--ccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC-----eEE
Q 010006 436 MGADYYETDAD--RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVT 507 (520)
Q Consensus 436 ~~~~~~~~~~~--~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~-----~v~ 507 (520)
.+++-..+.++ +.|.-|.|. +.||+++.+- .+.|.++|+||++|++.|...+..++.+++.++|+.. .|.
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g~--T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvr 162 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGGV--TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVR 162 (260)
T ss_pred CCCCeEeeEEEEeccccCCcee--EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEE
Confidence 12222222222 455566666 7899999987 9999999999999999999999999999999999977 378
Q ss_pred EcCCCEeCCCccC
Q 010006 508 IIKDALIPSGTII 520 (520)
Q Consensus 508 Ig~~~~i~~gtvi 520 (520)
||+.+.||..|-|
T Consensus 163 IG~~amiGg~S~v 175 (260)
T COG1043 163 IGAHAMIGGLSAV 175 (260)
T ss_pred Ecchheecccccc
Confidence 9999999987753
No 88
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.42 E-value=1.6e-12 Score=128.05 Aligned_cols=142 Identities=22% Similarity=0.280 Sum_probs=94.2
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~ 437 (520)
.+++|.+.|...+.+.|.+.+. .++.||++|.|+. +.|. ++.||++|.|++++.|.. .+.++
T Consensus 6 a~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG 81 (255)
T PRK12461 6 AVIDPSAKLGSGVEIGPFAVIG----ANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG 81 (255)
T ss_pred CEECCCCEECCCCEECCCCEEC----CCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence 4566667776677777766654 5677888888886 7666 677888887777777753 23333
Q ss_pred C-cccccccc--ccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEE
Q 010006 438 A-DYYETDAD--RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTI 508 (520)
Q Consensus 438 ~-~~~~~~~~--~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~I 508 (520)
+ +.....+. +.+..+. .+.||+++.|. ++.|+++|.||++|+|.+.+.+..+++++++++|+.+. +.|
T Consensus 82 ~~~~I~e~vtI~~gt~~g~---~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~I 158 (255)
T PRK12461 82 DRNVIREGVTIHRGTKGGG---VTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRI 158 (255)
T ss_pred CceEECCccEEecCcccCC---cEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEE
Confidence 2 11111111 1111111 14677777775 78888889999999998888888888888888888772 557
Q ss_pred cCCCEeCCCccC
Q 010006 509 IKDALIPSGTII 520 (520)
Q Consensus 509 g~~~~i~~gtvi 520 (520)
|++++|++|++|
T Consensus 159 G~~a~Vg~gs~V 170 (255)
T PRK12461 159 GALAMMAGGSRI 170 (255)
T ss_pred CCCcEECCCceE
Confidence 777777777754
No 89
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=1.7e-11 Score=114.56 Aligned_cols=234 Identities=16% Similarity=0.185 Sum_probs=164.9
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++..+||+|-=.+|||. -|||-.|+|+ |||.|+.++..++|.++++|.| +++++.+++.+. +
T Consensus 2 ~~~~viIPAR~~STRLp------gKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~---------G 63 (247)
T COG1212 2 MKFVVIIPARLASTRLP------GKPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQAF---------G 63 (247)
T ss_pred CceEEEEecchhcccCC------CCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHh---------C
Confidence 56789999999999997 4999999997 9999999999999999999999 677888888771 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
.--++.. .+...|| +.+..+...+.-..++.++=+.||. ++.. .+..+++...+.++++..++.+..++
T Consensus 64 --~~avmT~------~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ 134 (247)
T COG1212 64 --GEAVMTS------KDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDE 134 (247)
T ss_pred --CEEEecC------CCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCH
Confidence 1112211 1112566 7777777666543456677889999 6654 48888888887778877666665432
Q ss_pred c---CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 246 R---ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 246 ~---~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
. ..+--.+..|.+|+-..|...|-+...+. . ...+++.-.|||.|++.+|.++....-....
T Consensus 135 ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE- 199 (247)
T COG1212 135 EEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALKPSPLE- 199 (247)
T ss_pred HHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcCCchhH-
Confidence 1 12333455788899999987665432111 0 0135678899999999999887653211111
Q ss_pred ccccchHhh--hhCCceEEEEEecceE-EeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGA--TSIGMRVQAYLYDGYW-EDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~l--i~~~~~v~a~~~~g~w-~dI~t~~dy~~An~~~l 364 (520)
..+-|.+| ++.|++|.+...+..- ..+||++||.++...+.
T Consensus 200 -~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 200 -KIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred -HHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 02334443 4569999999998654 99999999999887654
No 90
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.40 E-value=1.4e-11 Score=117.44 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=83.6
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
+.+++.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++|+|++++. +.....+..
T Consensus 4 ~~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~~--------- 66 (200)
T PRK02726 4 VKNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLPP--------- 66 (200)
T ss_pred cCCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhccC---------
Confidence 3467899999999999997 48999999987 9999999999864 78998888632 222111110
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHH
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHR 229 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~ 229 (520)
. +.++. ++.|..|..++++.++..++ .+.+++++||+ ++..+ +..+++.+.
T Consensus 67 ---~-~~~i~------~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 ---G-CHWLR------EPPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ---C-CeEec------CCCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 1 22332 22334799999999998775 37899999999 66655 777887754
No 91
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.39 E-value=4.9e-12 Score=119.48 Aligned_cols=125 Identities=21% Similarity=0.279 Sum_probs=89.2
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCe
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (520)
.+||||||.|+||+ .+|.|++++|+ |||+|+++.+.+.++++++|+++++.+.+. .+.+... ....
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~-------~~~~ 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLL-------ADER 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhh-------cCCC
Confidence 58999999999998 48999999987 999999999888899999999987654321 1111100 0011
Q ss_pred EEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcE
Q 010006 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 171 v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+.++. +++|..|.+++++.++..+.....+.+++++||+ +++.+ +..+++.......++
T Consensus 68 ~~~~~------~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~ 128 (190)
T TIGR03202 68 IMLVC------CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDY 128 (190)
T ss_pred eEEEE------CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCE
Confidence 22221 2344578999999999876433457899999999 66655 778888765544443
No 92
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.38 E-value=3.5e-12 Score=108.51 Aligned_cols=98 Identities=35% Similarity=0.581 Sum_probs=84.1
Q ss_pred cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECC
Q 010006 394 DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 473 (520)
Q Consensus 394 ~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 473 (520)
++.+.+++||++|.|+++.|.+|+||++|.|+++|+|.+++++++ +.||+++.+++++|++
T Consensus 7 ~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~siig~ 67 (104)
T cd04651 7 RGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRRAIIDK 67 (104)
T ss_pred CCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEeEEECC
Confidence 445678999999999888899999999999999999999999876 5899999999999999
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
+++||+++++.+...... ..+.+..+++++|++++.+
T Consensus 68 ~~~Ig~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 68 NVVIPDGVVIGGDPEEDR----ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred CCEECCCCEECCCccccc----ccceEcCCeEEEEecccCC
Confidence 999999999987533322 2678888898889888754
No 93
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.37 E-value=6.6e-12 Score=129.63 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=45.7
Q ss_pred eeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 459 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 459 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
.||+++.|. .+.|++||+||++|.|..++.+...+++|++++|+.+. ++||++++|+++++|
T Consensus 227 ~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 227 VIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred eeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 455555555 46677788888888888888888888888888888762 668888888877764
No 94
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.36 E-value=5.1e-12 Score=116.60 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=87.9
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCc
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSV 456 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~ 456 (520)
..+.+.|.+.+. .++.||++|.|++ |.|. .++||++|.|+++|+|.++..+... ...++.+|+++
T Consensus 4 ~~~~I~~~a~i~----g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-----~~~~v~IG~~~- 73 (164)
T cd04646 4 PGAVVCQESEIR----GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-----EPKPMIIGSNN- 73 (164)
T ss_pred CCcEECCCCEEc----CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-----CCCCeEECCCC-
Confidence 344444554443 5678899999987 7774 3699999999999999988765431 22566777777
Q ss_pred ceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCC
Q 010006 457 PIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 517 (520)
Q Consensus 457 ~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~g 517 (520)
.|+.++.+.+++||++|.||.++.|..+..+++.+.++.++.|..+ +.|+++++++.+
T Consensus 74 --~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~-~~i~~~~vi~g~ 131 (164)
T cd04646 74 --VFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSS-EILPENTVIYGA 131 (164)
T ss_pred --EECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCC-cEECCCeEEeCC
Confidence 6888889999999999999999999876666665555555555555 555555555544
No 95
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.36 E-value=6.8e-12 Score=124.14 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=73.9
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~ 437 (520)
.++++.+.|...+.+.|.+.+. .++.|+++|+|++ |.|. ++.||++|.|++++.|.. .+.++
T Consensus 5 a~I~~~a~Ig~~~~I~~~~~I~----~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG 80 (254)
T TIGR01852 5 AIIEPGAEIGENVEIGPFCIVG----PGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIG 80 (254)
T ss_pred CEeCCCCEECCCCEECCCCEEC----CCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEEC
Confidence 3455566666666666665553 3455555555555 5444 466666666666666642 12222
Q ss_pred -CccccccccccccccCCC----cceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCC
Q 010006 438 -ADYYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 511 (520)
Q Consensus 438 -~~~~~~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~ 511 (520)
++... .++.|..+. .++.||+++.|. ++.|+++|.||++|.|.+...+.+...++++++|+.+ +.|..+
T Consensus 81 ~~~~I~----~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~-~~i~~~ 155 (254)
T TIGR01852 81 DNNTIR----EFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGL-VAVHQF 155 (254)
T ss_pred CCCEEC----CCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEecc-CEECCC
Confidence 11110 011111110 023555555554 5556666666666666666666666666666666666 666666
Q ss_pred CEeCCCccC
Q 010006 512 ALIPSGTII 520 (520)
Q Consensus 512 ~~i~~gtvi 520 (520)
+.|+++++|
T Consensus 156 v~Ig~~~~I 164 (254)
T TIGR01852 156 VRIGRYAMI 164 (254)
T ss_pred cEECCCCEE
Confidence 666666553
No 96
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.34 E-value=1.2e-11 Score=111.88 Aligned_cols=110 Identities=23% Similarity=0.324 Sum_probs=88.4
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.+||+|||+|+||. ..-|||++++|+ |||+|+++.+.+ .+++|++++..+...++.|+...+
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 579999999999998 245999999998 999999999998 789999999999999999988721
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHH
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHR 229 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~ 229 (520)
++++...- .|-..-+..++..+. .++|++++|+ +.+.. +..+++.+.
T Consensus 64 -v~vi~tpG--------~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG--------EGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC--------CChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 55654321 355667777776665 4999999999 55544 777777765
No 97
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.34 E-value=7.2e-12 Score=117.21 Aligned_cols=113 Identities=22% Similarity=0.281 Sum_probs=85.0
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+.+||||||.|+||+. ||+|+|++|+ |||+|+++.+... +++|+|+++++.+. ... + +
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~-~--------~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----YAL-L--------G-- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh-c--------C--
Confidence 4689999999999983 9999999986 9999999999987 89999999876544 111 1 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcE
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+.++. ++.|..|+.++++.++..++ .+.+++++||+ +.+.+ +..+++.+ ..+.++
T Consensus 59 -~~~v~------~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 59 -VPVIP------DEPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred -CcEee------CCCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 22322 12234799999999998764 47899999999 55554 87888766 334443
No 98
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.34 E-value=9.5e-12 Score=113.20 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=76.9
Q ss_pred cCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccC
Q 010006 375 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAK 453 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~ 453 (520)
+....|.+++.+.|.+.+. .|+.||+++.|+. +.|+.=. ...+||++|.|++.+++..+ .+..+.||+
T Consensus 9 ~~~P~i~~~a~Va~~A~vi----GdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~-----~~~p~~IG~ 77 (176)
T COG0663 9 GLSPKIDPTAFVAPSATVI----GDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHAD-----PGYPVTIGD 77 (176)
T ss_pred CCCCCCCCceEECCCCEEE----EeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecC-----CCCCeEECC
Confidence 3344566666667777664 6888899988888 7776322 55667777777777777653 236788999
Q ss_pred CCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCC
Q 010006 454 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE 491 (520)
Q Consensus 454 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~ 491 (520)
++ +||+++.|+.|.|+++|.||.|++|.|++.+++
T Consensus 78 ~v---tIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~ 112 (176)
T COG0663 78 DV---TIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGD 112 (176)
T ss_pred Cc---EEcCccEEEEeEECCCcEEecCceEeCCcEECC
Confidence 98 899999999999999999999999998544433
No 99
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.34 E-value=9.1e-12 Score=128.58 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=39.7
Q ss_pred cccccCCCcceeeCCCCEEc-----ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 448 RFLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.+.||+++ .||+++.|. +++|++++.|+.+|.|...+.+++++.++.++.|..+ ++||+++.|+.++.|
T Consensus 203 ~v~Ig~~v---~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~i 276 (343)
T PRK00892 203 RVIIGDDV---EIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVGI 276 (343)
T ss_pred cEEECCCc---EECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCEE
Confidence 46666666 677777664 3455555555555555444444444444444444444 677777777776653
No 100
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.34 E-value=2.1e-10 Score=110.16 Aligned_cols=222 Identities=19% Similarity=0.190 Sum_probs=143.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChh-HHHHHHHHhhhccCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSA-SLNRHLSRAYASNMGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~ 164 (520)
++++.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+. |++|+|+++.... .+.++...
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-------- 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL-------- 69 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh--------
Confidence 4578999999999999995 799999999987 99999999998854 7999999986433 33333321
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEec
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPM 242 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~ 242 (520)
.....++++.- + ..-.++++.++..+..+..+.||+..+== |... .+.++++... +..+.+.+.|+
T Consensus 70 -~~~~~v~~v~G-----G----~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~alpv 137 (230)
T COG1211 70 -SADKRVEVVKG-----G----ATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAILALPV 137 (230)
T ss_pred -ccCCeEEEecC-----C----ccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEEEeec
Confidence 01122444321 1 23568999999888754456677776654 5554 4888884433 34455666665
Q ss_pred CcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 243 ~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
.+ -+...++++.|.+. +........+ --..|+.+.|.+.+...+....+
T Consensus 138 ~D------Tik~~~~~~~i~~t---~~R~~l~~~Q----------------------TPQ~F~~~~L~~a~~~a~~~~~~ 186 (230)
T COG1211 138 TD------TLKRVDADGNIVET---VDRSGLWAAQ----------------------TPQAFRLELLKQALARAFAEGRE 186 (230)
T ss_pred cC------cEEEecCCCCeeec---cChhhhhhhh----------------------CCccccHHHHHHHHHHHHhcCCC
Confidence 43 13344445666644 3333222111 12367888887776654433333
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+. |--..+...|.++..+.-+-+-+-|.||+|+..|+..+.
T Consensus 187 ~t-Ddas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 187 IT-DDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred cC-CHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 32 222233333888888888888999999999998887653
No 101
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.33 E-value=8.4e-12 Score=124.03 Aligned_cols=143 Identities=25% Similarity=0.314 Sum_probs=74.9
Q ss_pred ccccCCCccccCCCcCCCceee-------cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccc
Q 010006 372 SFYDRSAPIYTQPRYLPPSKML-------DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYY 441 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~-------~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~ 441 (520)
..++|++.+...+.+.|++.+. ++.| .+++||++|.||+ |.|. +++|+.++.||++|.|....+++.|-|
T Consensus 106 A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgF 185 (338)
T COG1044 106 AVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGF 185 (338)
T ss_pred ccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCcc
Confidence 3456666666655555555554 1222 3344555555554 4444 455555555555555555555554422
Q ss_pred ----------cccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC-----eE
Q 010006 442 ----------ETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IV 506 (520)
Q Consensus 442 ----------~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~-----~v 506 (520)
......+++||+++ .||.|++|.+.-++ ++.||+++.|-|.+.++.++++|++|.|..+ .+
T Consensus 186 g~a~~~~g~~Ki~q~g~V~Igd~V---eIGanT~Idrga~~-dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~ 261 (338)
T COG1044 186 GYAGTAIGWVKIPQIGRVIIGDDV---EIGANTTIDRGALD-DTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSV 261 (338)
T ss_pred ccccccCCceEcceeceEEECCce---EEcccceecccccc-CceecCCcEEcceeEEccccEECCCcEEeccceeeccc
Confidence 12222455555555 56666666432222 2555555555555555555555555555544 27
Q ss_pred EEcCCCEeCCCc
Q 010006 507 TIIKDALIPSGT 518 (520)
Q Consensus 507 ~Ig~~~~i~~gt 518 (520)
+||+++.|+..+
T Consensus 262 ~IG~~v~igg~v 273 (338)
T COG1044 262 KIGKYVIIGGQV 273 (338)
T ss_pred eECCeEEECcce
Confidence 788888887654
No 102
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.32 E-value=1.2e-11 Score=117.12 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=69.3
Q ss_pred CccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccc--c
Q 010006 371 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--R 447 (520)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~--~ 447 (520)
..++.+...+...+.+.|.+.+. .+++||++|+|++ |.|.++.||++|.|+++|.|+++++.++......+. .
T Consensus 9 ~~~~~~~v~ig~~~~I~~~a~i~----~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~ 84 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDPGVILE----GKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP 84 (193)
T ss_pred eEEEcCCeEECCCcEECCCCEEe----CcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcC
Confidence 44556666677777777777664 5789999999998 999999999999999999999887766533222111 2
Q ss_pred cccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
++.+++++ .|++++.+++++|++++.|+..
T Consensus 85 ~~~Ig~~~---~Ig~~~~i~~s~ig~~~~i~~~ 114 (193)
T cd03353 85 GTVLGEGV---HIGNFVEIKKSTIGEGSKANHL 114 (193)
T ss_pred ccEECCCC---EECCcEEEecceEcCCCEeccc
Confidence 34444444 4555555556666655544443
No 103
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.32 E-value=1e-11 Score=122.90 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=58.5
Q ss_pred cceEECCCcEEee-eEEe-------------eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCc---ceee
Q 010006 398 TDSVIGEGCVIKN-CKIH-------------HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSV---PIGI 460 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-------------~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~I 460 (520)
.++.||++|.|++ +.|. ++.||++|.|+++|+|......+..... -..++.+++++. .+.|
T Consensus 46 ~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~--IG~~~~I~~~~~I~~~~~I 123 (254)
T cd03351 46 GPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTR--IGNNNLLMAYVHVAHDCVI 123 (254)
T ss_pred CCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceE--ECCCCEECCCCEECCCCEE
Confidence 3566777777776 6664 4677777777777777654322210000 001222222220 1234
Q ss_pred CCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 461 GKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 461 g~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
|+++.|. ++.+..+++||++|.|.+.+.+...++++++++|+.+
T Consensus 124 G~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~ 168 (254)
T cd03351 124 GNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGG 168 (254)
T ss_pred CCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcC
Confidence 4444444 4455556677777777777777777777777777777
No 104
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.30 E-value=2.5e-11 Score=116.07 Aligned_cols=60 Identities=27% Similarity=0.334 Sum_probs=31.5
Q ss_pred eCCCCEEc-ceEECCCCEECCCcEEec------CCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 460 IGKNSHIK-RAIIDKNARIGDNVKIVN------SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 460 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~------~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
||+++.+. ++.|+.+++||+++.|.+ ...+++.++++.++.|..+ ++|+++++|++++++
T Consensus 117 Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~-~~ig~~~~i~~~s~v 183 (205)
T cd03352 117 IGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGH-LTIGDGVVIGAGSGV 183 (205)
T ss_pred ECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 34444433 334444444444444444 4444444444444555555 678888888877764
No 105
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.29 E-value=2.7e-10 Score=109.75 Aligned_cols=215 Identities=20% Similarity=0.235 Sum_probs=131.9
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCCcC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 167 (520)
+.|||||||.|+||+ ...||.+++++|+ |+|.|+++.+.+. .+++|+|++.... +.+++.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 469999999999998 4689999999997 9999999999884 6899999997665 333333333 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
.+.++.-. ..-.+++++++..+.+.. +.+++..|=- +...+ +.++++..++. ..+.+...+..+
T Consensus 67 --~v~iv~GG---------~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~D- 132 (221)
T PF01128_consen 67 --KVKIVEGG---------ATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTD- 132 (221)
T ss_dssp --TEEEEE-----------SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SS-
T ss_pred --CEEEecCC---------hhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEeccc-
Confidence 13343211 224689999998887532 5677766654 55544 88888887652 344556666432
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccc
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~ 325 (520)
. +...++++.|.+.. ..... +.--.-..|+.+.|.+..+........+ +
T Consensus 133 ----T-ik~v~~~~~v~~tl---dR~~l----------------------~~~QTPQ~F~~~~l~~a~~~a~~~~~~~-t 181 (221)
T PF01128_consen 133 ----T-IKRVDDDGFVTETL---DRSKL----------------------WAVQTPQAFRFELLLEAYEKADEEGFEF-T 181 (221)
T ss_dssp ----E-EEEESTTSBEEEEE---TGGGE----------------------EEEEEEEEEEHHHHHHHHHTHHHHTHHH-S
T ss_pred ----c-EEEEecCCcccccC---CHHHe----------------------eeecCCCeecHHHHHHHHHHHHhcCCCc-c
Confidence 2 33456567766543 22221 2233455788888887765431111122 3
Q ss_pred cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
|--..+...|.+++.++-+..-+-|.+|+|+..|...+
T Consensus 182 Ddasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 182 DDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp SHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 33334444488999988887889999999998887644
No 106
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.29 E-value=2.1e-11 Score=120.98 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=52.1
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcc----ccccccccccccCCCcceeeCCCCEEcc----
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY----YETDADRRFLAAKGSVPIGIGKNSHIKR---- 468 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~Ig~~~~i~~---- 468 (520)
.++|++++.|++ |.|. +++|+.++.||++|.|.+...++.+- |. .....+.||+++ .|+++++|.+
T Consensus 26 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~-g~~~~v~IG~~~---~I~e~~~I~~~~~~ 101 (262)
T PRK05289 26 FCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYK-GEPTRLVIGDNN---TIREFVTINRGTVQ 101 (262)
T ss_pred CeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeeccc-CCCCeEEECCCC---EECCCeEEeccccc
Confidence 345555555554 5444 45555555555555555555544310 00 111245555555 4555555543
Q ss_pred ----eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 469 ----AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 469 ----~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++||+++.|+.++.|...+.+++.+.++.++.+..+ ++||+++.|+++++
T Consensus 102 ~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~-v~Igd~~~Ig~~~~ 155 (262)
T PRK05289 102 GGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLTA 155 (262)
T ss_pred CCCeeEECCceEECCCCEECCeEEECCCeEECCccccccc-cccCCcEEEeecce
Confidence 234444444444444333333333333333333333 45555555555443
No 107
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.29 E-value=1.1e-10 Score=111.10 Aligned_cols=106 Identities=16% Similarity=0.325 Sum_probs=75.3
Q ss_pred ccccceEEEEEeCCCCCCCCccccCCCccceecCC-ccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCC
Q 010006 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA-NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (520)
Q Consensus 85 ~~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G-~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~ 163 (520)
.+.+++.+||||||.|+||+ .+|+|+|++| + |||+|+++.+... +++|+|++++ +.. . .
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~--- 63 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F--- 63 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c---
Confidence 44567999999999999997 6999999998 7 9999999999876 8999999874 111 0 0
Q ss_pred CCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHH
Q 010006 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERF 224 (520)
Q Consensus 164 ~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~l 224 (520)
. +.++.... .. ..|...++..++...+ .+.+++++||+ +++.+ +.++
T Consensus 64 ---~---~~~v~d~~--~~---~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 ---N---APFLLEKE--SD---LFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred ---C---CcEEecCC--CC---CCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 0 12222211 11 2566667776654333 47899999999 65665 5555
No 108
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.28 E-value=2.8e-11 Score=114.25 Aligned_cols=118 Identities=12% Similarity=0.291 Sum_probs=82.1
Q ss_pred CCccccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccc
Q 010006 377 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLA 451 (520)
Q Consensus 377 ~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~ 451 (520)
...|..++.+.|.+.+. .++.||++|.|+. |.|.. .+||++|.||++|+|.... ..++.|
T Consensus 8 ~p~i~~~~~I~~~a~I~----G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~-----------~~~siI 72 (192)
T TIGR02287 8 TPVVHPEAYVHPTAVLI----GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP-----------GQDTVV 72 (192)
T ss_pred CCcCCCCcEECCCCEEE----eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC-----------CCCCeE
Confidence 33455555666666554 5678888888887 77763 6888889999888884321 134556
Q ss_pred cCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 452 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 452 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++++ .||+++.|++|+|++++.||.++++.++.. ++++++|+++ +.|.++..|+++++
T Consensus 73 g~~~---~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~------IG~~s~Vgag-s~V~~~~~ip~~~l 130 (192)
T TIGR02287 73 EENG---HVGHGAILHGCIVGRNALVGMNAVVMDGAV------IGENSIVAAS-AFVKAGAEMPAQYL 130 (192)
T ss_pred CCCC---EECCCCEEcCCEECCCCEECCCcccCCCeE------ECCCCEEcCC-CEECCCCEECCCeE
Confidence 6666 799999999999999999999999976444 4455555555 55555555555543
No 109
>PLN02296 carbonate dehydratase
Probab=99.28 E-value=2.3e-11 Score=120.32 Aligned_cols=126 Identities=15% Similarity=0.283 Sum_probs=84.4
Q ss_pred cCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccc
Q 010006 375 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRF 449 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~ 449 (520)
+....+...+.+.|.+.+. .++.||++|.|+. |.|.. ..||++|.|+++|.|..+..-- ......+
T Consensus 50 ~~~p~I~~~~~I~p~A~V~----G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~-----~g~~~~s 120 (269)
T PLN02296 50 DKAPVVDKDAFVAPSASVI----GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNL-----SGKVLPT 120 (269)
T ss_pred CCCCccCCCCEECCCcEEE----cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcc-----cCCCCCc
Confidence 3444556666677777664 4677888888876 76663 4788888888888886321100 0011356
Q ss_pred cccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 450 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
+||+++ .||+++.|.+|+|+++|.||.+++|.++. +++++++|+.| ++|.++..|+++++
T Consensus 121 iIG~~v---~IG~~avI~g~~Igd~v~IG~ga~I~~gv------~Ig~~a~Igag-SvV~~~~~I~~~~~ 180 (269)
T PLN02296 121 IIGDNV---TIGHSAVLHGCTVEDEAFVGMGATLLDGV------VVEKHAMVAAG-ALVRQNTRIPSGEV 180 (269)
T ss_pred EeCCCC---EECCCceecCCEECCCcEECCCcEECCCe------EECCCCEECCC-CEEecCCEeCCCeE
Confidence 777777 79999999999999999999999997654 45555666666 55555555555554
No 110
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.27 E-value=3.6e-11 Score=112.94 Aligned_cols=119 Identities=24% Similarity=0.295 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+. +....+ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~~--------~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAGF--------G-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---HhhccC--------C--
Confidence 468999999999997 359999999987 999999999986 589999988654322 111111 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEE
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADIT 236 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~t 236 (520)
+.++... ..+..|+.++|+.++..++ .+.++++.||+ +.+.+ +..+++.+.+.++.++
T Consensus 62 -~~~i~~~-----~~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 121 (186)
T TIGR02665 62 -LPVVPDA-----LADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALEASDADIA 121 (186)
T ss_pred -CcEEecC-----CCCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEE
Confidence 1222211 1123799999999998774 47899999999 66655 7788877654444443
No 111
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.27 E-value=2.3e-11 Score=119.96 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=50.4
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcc---ccccccccccccCCCcceeeCCCCEEc-ceEECC
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY---YETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDK 473 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 473 (520)
++|++++.|++ |.|. +++|..++.||++|.|.+...++... -.......+.||+++ .|+++++|. .+.++.
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~---~I~e~vtI~~gt~~g~ 100 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN---VIREGVTIHRGTKGGG 100 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce---EECCccEEecCcccCC
Confidence 44555555544 4444 45555555555555555444444210 000111234455554 455555554 223333
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccC-----eEEEcCCCEeCCCcc
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTI 519 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~-----~v~Ig~~~~i~~gtv 519 (520)
+++||++|.|.+++.+.+.+.+|+++.|+.+ -|+||++++|+++++
T Consensus 101 ~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~ 151 (255)
T PRK12461 101 VTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCL 151 (255)
T ss_pred cEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCE
Confidence 3444444444443334334444444333322 144555555554443
No 112
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.26 E-value=5.4e-11 Score=113.81 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=78.3
Q ss_pred ccCCCccccCCCcCCCceee-cccc-cceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCcccc---------
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYE--------- 442 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~--------- 442 (520)
+.+.+.+...+.+.+++.+. ++.| .++.||++|+|+. ++.|+.++.||++|.|.+...++.+.+.
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~----~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~ 85 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHP----NVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWV 85 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC----CCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEE
Confidence 34444444444444444443 1222 3445555555544 4555555555566655555444432221
Q ss_pred -ccccccccccCCCcceeeCCCCEEc-----ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCC
Q 010006 443 -TDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPS 516 (520)
Q Consensus 443 -~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~ 516 (520)
......+++++++ .|++++.+. ++.|++++.|+.++.|.+...+++...++.++.|..+ ++||+++.|++
T Consensus 86 ~~~~~~~v~Ig~~~---~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~ 161 (205)
T cd03352 86 KIPQLGGVIIGDDV---EIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGG 161 (205)
T ss_pred EcCCcceEEECCCE---EECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcC
Confidence 1112356777766 678777774 4677778877777777776666666666656555555 66666666666
Q ss_pred CccC
Q 010006 517 GTII 520 (520)
Q Consensus 517 gtvi 520 (520)
+++|
T Consensus 162 ~~~v 165 (205)
T cd03352 162 QVGI 165 (205)
T ss_pred CCEE
Confidence 6543
No 113
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.25 E-value=2.6e-11 Score=129.89 Aligned_cols=107 Identities=22% Similarity=0.271 Sum_probs=67.0
Q ss_pred cccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccccc-ccccccCCCcceeeCCCCEEc---
Q 010006 394 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK--- 467 (520)
Q Consensus 394 ~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~--- 467 (520)
++.+.+++|+++|.|+. +.|. +++||++|.||++|.+.++.+..++.+..... ..+.||+++ .||.++.+.
T Consensus 308 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~---~ig~~~~~~~~~ 384 (451)
T TIGR01173 308 YSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNV---NIGAGTITCNYD 384 (451)
T ss_pred ecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeEeeeEEcCCc---EECCCeEEeCcc
Confidence 34455677888888887 7777 68889999999988888777765433221111 234555555 455555553
Q ss_pred -----ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcC
Q 010006 468 -----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 510 (520)
Q Consensus 468 -----~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~ 510 (520)
.++|++++.||.++.|. ...++|++++|++| .+|.+
T Consensus 385 ~~~~~~~~Igd~~~ig~~~~i~------~~~~ig~~~~i~~g-~~v~~ 425 (451)
T TIGR01173 385 GANKHKTIIGDGVFIGSNTQLV------APVKVGDGATIAAG-STVTK 425 (451)
T ss_pred cccCCCCEECCCcEECCCCEEE------CCcEECCCCEEccC-CEECc
Confidence 24555555555555554 45667777777777 44433
No 114
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.25 E-value=6.6e-11 Score=108.19 Aligned_cols=102 Identities=21% Similarity=0.347 Sum_probs=71.2
Q ss_pred cceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEEC
Q 010006 398 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 472 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 472 (520)
.++.||++|+|++ |.|.. +.||++|.|+++|+|.... ..++.+++++ .|++++.+.+++|+
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~-----------~~~~~Ig~~~---~Ig~~~~i~~~~Ig 82 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFP-----------GQDTVLEENG---HIGHGAILHGCTIG 82 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecC-----------CCCeEEcCCC---EECCCcEEECCEEC
Confidence 4678888888887 77763 7899999999999993210 1234445555 79999999999999
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
+++.||.+++|.++..+++.+.++.++++..+ ..|++++++
T Consensus 83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~-~~i~~~~~v 123 (155)
T cd04745 83 RNALVGMNAVVMDGAVIGEESIVGAMAFVKAG-TVIPPRSLI 123 (155)
T ss_pred CCCEECCCCEEeCCCEECCCCEECCCCEeCCC-CEeCCCCEE
Confidence 99999999999875555554444444444444 344444443
No 115
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.25 E-value=3.2e-10 Score=107.00 Aligned_cols=113 Identities=24% Similarity=0.324 Sum_probs=80.8
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++.|.+||||||+|+|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. +...
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~---------- 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF---------- 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc----------
Confidence 46799999999999999 58999999997 999999999998754 555555444332 1111
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcC
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETD 232 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ 232 (520)
+ ++++.+. ..++ |...+++.++..+. .+.+++++||+ +...+ +..+.+...+.+
T Consensus 61 --g-~~vv~D~-----~~~~-GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 --G-LPVVPDE-----LPGF-GPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred --C-CceeecC-----CCCC-CCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 3344322 1222 89999999997775 47999999999 66666 556666554433
No 116
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=3.5e-11 Score=122.22 Aligned_cols=115 Identities=19% Similarity=0.366 Sum_probs=81.4
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccc-cccccccccCCCcceeeCCCCEEc-ceEECCC
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYET-DADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 474 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 474 (520)
++.||.+|+|.. +.++ ++.||++|+||++|.|.|+.|-++..... -+-..+.+|+|+ .||++++++ ++.++++
T Consensus 268 dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~---~VGPfA~LRPg~~L~~~ 344 (460)
T COG1207 268 DVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGA---TVGPFARLRPGAVLGAD 344 (460)
T ss_pred cEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCc---ccCCccccCCcCcccCC
Confidence 455566666665 5555 68888888888888888888776654443 233567778888 799999999 9999999
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++||..|.+.+ +.+++....++-+|||+. .||.++.||+||+
T Consensus 345 ~hIGNFVEvK~-a~ig~gsKa~HLtYlGDA--~iG~~~NiGAGtI 386 (460)
T COG1207 345 VHIGNFVEVKK-ATIGKGSKAGHLTYLGDA--EIGENVNIGAGTI 386 (460)
T ss_pred CeEeeeEEEec-ccccCCccccceeeeccc--eecCCceeccceE
Confidence 99999999975 667766665555555554 5555555555543
No 117
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.23 E-value=6.2e-11 Score=96.01 Aligned_cols=65 Identities=25% Similarity=0.457 Sum_probs=53.7
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
||++|.|++ +.|.+++||++|.|+++|.|++++++++ +.|++++.|.+++|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 567777776 6677888999999999999988888775 47888888989999999999988
Q ss_pred cEEec
Q 010006 481 VKIVN 485 (520)
Q Consensus 481 ~~i~~ 485 (520)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 88864
No 118
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.22 E-value=7.3e-11 Score=120.46 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=53.9
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccc-----------cccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEE
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYET-----------DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 483 (520)
++.|+.+|.||++|.|...+.++++-|.. .....+.||+++ .||.+++|.+..+ .+++||+++.|
T Consensus 151 ~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v---~IGa~~~I~r~~~-~~t~Ig~~~~I 226 (324)
T TIGR01853 151 NVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDV---EIGANTTIDRGAF-DDTIIGEGTKI 226 (324)
T ss_pred CcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCc---EECCCCEEecCCc-CcceecCCcEE
Confidence 34444445555555555555555432211 111346666666 5777776643222 23455555555
Q ss_pred ecCCCcCCcccccCCeEEccC-----eEEEcCCCEeCCCccC
Q 010006 484 VNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTII 520 (520)
Q Consensus 484 ~~~~~v~~~~~~~~~~~I~~~-----~v~Ig~~~~i~~gtvi 520 (520)
.|.+.+++++++|+++.|..+ .++||+++.|++++.|
T Consensus 227 ~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I 268 (324)
T TIGR01853 227 DNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGV 268 (324)
T ss_pred ccCcEECCCCEECCCcEECCcceEcCccEECCCeEEcccccc
Confidence 555555555555555555543 2777877777766654
No 119
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.22 E-value=7.2e-11 Score=111.79 Aligned_cols=114 Identities=13% Similarity=0.216 Sum_probs=79.8
Q ss_pred cccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCC
Q 010006 380 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG 454 (520)
Q Consensus 380 i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~ 454 (520)
+...+.+.|.+.+. .+++||++|.|+. |.|.. .+||.+|.||++|.|..... .++.++++
T Consensus 13 i~~~a~I~~~a~I~----g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~-----------~~siIg~~ 77 (196)
T PRK13627 13 VHPTAFVHPSAVLI----GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD-----------TDTIVGEN 77 (196)
T ss_pred cCCCeEECCCCEEE----CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC-----------CCCEECCC
Confidence 33444555555543 5677888888887 77764 47888888888888865431 35677777
Q ss_pred CcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCc
Q 010006 455 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 518 (520)
Q Consensus 455 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gt 518 (520)
+ .||+++.+.+|+|+++|.||.++++.++.. +++++.|++| .+|-++..+++++
T Consensus 78 ~---~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~------IG~~s~Vgag-s~V~~~~~ip~~~ 131 (196)
T PRK13627 78 G---HIGHGAILHGCVIGRDALVGMNSVIMDGAV------IGEESIVAAM-SFVKAGFQGEKRQ 131 (196)
T ss_pred C---EECCCcEEeeEEECCCCEECcCCccCCCcE------ECCCCEEcCC-CEEeCCcCcCCCc
Confidence 7 799999999999999999999999976444 4455555555 4455555555544
No 120
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.22 E-value=1.1e-09 Score=106.79 Aligned_cols=115 Identities=25% Similarity=0.279 Sum_probs=79.9
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccCh--hHHHHHHHHhhhccCCCCcCC
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 168 (520)
|||||+|.|+||. +|+|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++.. +.
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~~--------- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-LG--------- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-cC---------
Confidence 7999999999995 4999999987 99999999999987 899999998765 556555543 11
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEE
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADIT 236 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~t 236 (520)
+.++. ++.| + .+......++....+.++++.||+ +++. .+.++++.+...+.+++
T Consensus 65 --v~~v~------~~~~--~---~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFR------GSEE--D---VLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEE------CCch--h---HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 22321 1111 1 222222222222357899999999 6664 49999998876666554
No 121
>PLN02472 uncharacterized protein
Probab=99.21 E-value=1.2e-10 Score=113.72 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=85.7
Q ss_pred cccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccc
Q 010006 373 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADR 447 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~ 447 (520)
+.+....+...+.+.|++.+. .++.||++|.|+. +.|.. ..||++|.|+++|.|....... +....
T Consensus 55 ~~~~~p~i~~~~~I~p~a~i~----G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~-----~~i~~ 125 (246)
T PLN02472 55 LGQWVPKVAVDAYVAPNVVLA----GQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSP-----TGLPA 125 (246)
T ss_pred cCCcCCccCCCCEECCCCEEe----cCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccc-----cCCCC
Confidence 333344556666777777665 4677888888876 66652 6888999999988885332100 00013
Q ss_pred cccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.+.||+++ .||+++.|.+|+|+++|.||.+++|.++.. +++++.|+++ ++|.++..|++|++
T Consensus 126 ~tvIG~~v---~IG~~s~L~~~~Igd~v~IG~~svI~~gav------Ig~~~~Ig~g-svV~~g~~Ip~g~~ 187 (246)
T PLN02472 126 ETLIDRYV---TIGAYSLLRSCTIEPECIIGQHSILMEGSL------VETHSILEAG-SVLPPGRRIPTGEL 187 (246)
T ss_pred CcEECCCC---EECCCcEECCeEEcCCCEECCCCEECCCCE------ECCCCEECCC-CEECCCCEeCCCCE
Confidence 56777777 899999999999999999999999986443 4445555555 55555555555543
No 122
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.21 E-value=6.3e-11 Score=113.09 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=14.5
Q ss_pred eEECCCcEEee-eEEeeeEECCCCEECCCCEEcc
Q 010006 400 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED 432 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~ 432 (520)
+.||++|.|++ |.|.+++||++|.|+.+|.|.+
T Consensus 20 ~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~ 53 (204)
T TIGR03308 20 SKLGRYTEIGERTRLREVALGDYSYVMRDCDIIY 53 (204)
T ss_pred cEeCCCcEECCCcEEeCCEECCCCEECCCcEEee
Confidence 34444444444 4444444444444444444433
No 123
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.16 E-value=1.5e-10 Score=114.18 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=19.6
Q ss_pred eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcC
Q 010006 469 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 510 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~ 510 (520)
++|+++|.||.+++|..+..+++++.++.+++|..+ +.|++
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g-t~I~~ 217 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS-TKIYD 217 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC-eEECc
Confidence 455555555555555444444444444444444444 44443
No 124
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.15 E-value=4e-10 Score=102.87 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=75.1
Q ss_pred cceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEEC
Q 010006 398 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 472 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 472 (520)
.++.||++|.|++ +.|.. .+||++|.|+++|.|.... ..++.||+++ .|++++.+.+++|+
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~-----------~~~~~Ig~~~---~I~~~~~i~~~~Ig 82 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH-----------GYPTEIGDYV---TIGHNAVVHGAKVG 82 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC-----------CCCeEECCCC---EECCCcEEECcEEC
Confidence 5677888888887 77774 4899999999999987531 0234555555 79999999999999
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCE
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 513 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~ 513 (520)
+++.||.++.+.+...+++...++.++.+..+ ..|+++++
T Consensus 83 ~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g-~~i~~~~v 122 (154)
T cd04650 83 NYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG-KEIPDYSL 122 (154)
T ss_pred CCCEEcCCCEEeCCCEECCCCEECCCCEECCC-cEeCCCCE
Confidence 99999999999876666666666666655555 55555555
No 125
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.15 E-value=3.3e-10 Score=104.41 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=59.2
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc-cEEECCccccccccccccccCCCcceeeCCCCEEcceEECCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN 474 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~ 474 (520)
.++.|++++.|++ +.|. +++||++|+|+++|.|++ ++++++ +.|++++.|.+++|+++
T Consensus 16 ~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~-------------------~~I~~~~~i~~siig~~ 76 (163)
T cd05636 16 GPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDG-------------------CVVGNSVEVKNSIIMDG 76 (163)
T ss_pred CCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCC-------------------CEECCCcEEeeeEecCC
Confidence 4567788888876 6666 689999999999999985 444443 47888899988898888
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEE
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFI 501 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I 501 (520)
+.|+.++.+.+ .-+++..++++++.+
T Consensus 77 ~~I~~~~~i~~-siIg~~~~I~~~~~i 102 (163)
T cd05636 77 TKVPHLNYVGD-SVLGENVNLGAGTIT 102 (163)
T ss_pred CEeccCCEEec-CEECCCCEECCCcEE
Confidence 88877665532 334444444444433
No 126
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.14 E-value=1.8e-09 Score=112.54 Aligned_cols=110 Identities=11% Similarity=0.186 Sum_probs=78.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++++.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+... +++|+|+++...... +.. +
T Consensus 172 ~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~~---~~~-~-------- 232 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAEQ---YRS-F-------- 232 (369)
T ss_pred cCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhhH---Hhh-c--------
Confidence 456789999999999998 59999999997 9999999999864 788888776542211 111 1
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHH
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQA 227 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~ 227 (520)
+ +.++.... ...|...++..++.... .+.+++++||+ +.+.+ +..+++.
T Consensus 233 ~---v~~i~d~~------~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 233 G---IPLITDSY------LDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred C---CcEEeCCC------CCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 1 22332211 12688888888876543 46899999999 66665 6666664
No 127
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.14 E-value=2.9e-10 Score=118.29 Aligned_cols=121 Identities=24% Similarity=0.309 Sum_probs=86.6
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|+++.+.+.+.+++.+
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~---------- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG---------- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC----------
Confidence 457899999999999995 379999999987 999999999986 4899999776554443332211
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+.++.... ++ ..|..++++.++..++ .+.+++++||+ ++..+ +..+++.+...++++
T Consensus 67 ----~~~i~d~~----~g-~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 67 ----LPVYPDIL----PG-FQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred ----CcEEecCC----CC-CCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 11221111 11 1588899999987764 36799999998 66655 777887665555443
No 128
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.12 E-value=7.3e-10 Score=102.60 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=81.9
Q ss_pred ccccCCCcCCCceeecccccceEECCCcEEee-eEEe-----eeEECCCCEECCCCEEcccEEECCcccccccccccccc
Q 010006 379 PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAA 452 (520)
Q Consensus 379 ~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~ 452 (520)
.|.+++.+.|.+.+. .++.||++|+|++ +.|. ++.||++|.|++++.|.... ...+.+|
T Consensus 4 ~ig~~~~I~~~a~i~----~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~-----------~~~v~Ig 68 (167)
T cd00710 4 VIDPSAYVHPTAVVI----GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE-----------GYSVWIG 68 (167)
T ss_pred EeCCCeEECCCCEEE----eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC-----------CCCEEEC
Confidence 344455555555553 3566777777776 6554 25777777777777774210 1234555
Q ss_pred CCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 453 KGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 453 ~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++ .|+.++.|. .++|+++|.||.++.|.+ +.+++.+.++.++.|. + +.|++++++++|+++
T Consensus 69 ~~~---~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 69 KNV---SIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI 131 (167)
T ss_pred CCc---eECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence 666 788888887 499999999999999863 5667777777777663 4 678888888888763
No 129
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.12 E-value=7.3e-10 Score=101.03 Aligned_cols=112 Identities=17% Similarity=0.292 Sum_probs=76.2
Q ss_pred CCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcce
Q 010006 384 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPI 458 (520)
Q Consensus 384 ~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
+.+.|.+.+. .++.||++|.|++ +.|.. ++||++|.|+++|+|.++.. .+++||+++
T Consensus 6 ~~i~~~a~i~----g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~-----------~~~~Ig~~~--- 67 (153)
T cd04645 6 AFIAPNATVI----GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG-----------YPTIIGDNV--- 67 (153)
T ss_pred eEECCCCEEE----EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC-----------CCeEEcCCc---
Confidence 3344444443 4577888888887 76663 58999999999999877511 123333444
Q ss_pred eeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 459 GIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 459 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
.|+.++.+.+++|++++.||.++.+.....++++++++.++.|..+ +.|+.++++
T Consensus 68 ~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~-~~i~~~~~~ 122 (153)
T cd04645 68 TVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG-KVIPPGSLV 122 (153)
T ss_pred EECCCcEEeeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCC-CEeCCCCEE
Confidence 7999999999999999999999999766555555555555555555 455555544
No 130
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.11 E-value=5.1e-10 Score=90.00 Aligned_cols=65 Identities=45% Similarity=0.673 Sum_probs=55.6
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
|+++|.|++ +.|.+++||++|+|++++.|+++++++. +.|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 677777776 7777889999999999999999988876 57999999999999999999999
Q ss_pred cEEec
Q 010006 481 VKIVN 485 (520)
Q Consensus 481 ~~i~~ 485 (520)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 88865
No 131
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=2.7e-10 Score=122.31 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=68.3
Q ss_pred cccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccccc-ccccccCCCcceeeCCCCEEc---
Q 010006 394 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK--- 467 (520)
Q Consensus 394 ~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~--- 467 (520)
++.+.+++|+++|.|+. +.|. ++.||.++.||+++.|.++.++.+..+-.... .++.||+++ .||.++.+.
T Consensus 312 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~---~ig~~~~~~~~~ 388 (456)
T PRK09451 312 YSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNV---NIGAGTITCNYD 388 (456)
T ss_pred CEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCC---EEcCCeEEeccc
Confidence 34556778888888887 8887 78999999999999998888877654422111 345555555 566555442
Q ss_pred -----ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcC
Q 010006 468 -----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 510 (520)
Q Consensus 468 -----~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~ 510 (520)
.++||++|.||.++.+ ..+.+++++++|++| ++|.+
T Consensus 389 ~~~~~~~~Igd~~~ig~~~~i------~~~~~ig~~~~i~~g-s~v~~ 429 (456)
T PRK09451 389 GANKFKTIIGDDVFVGSDTQL------VAPVTVGKGATIGAG-TTVTR 429 (456)
T ss_pred CcccCCCEECCCcEECCCCEE------eCCcEECCCCEECCC-CEEcc
Confidence 2445555555555544 455566666777766 44433
No 132
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.10 E-value=4.2e-10 Score=109.95 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=10.0
Q ss_pred eEECCCCEECCCCEEcccEEE
Q 010006 416 SVVGLRSCISEGAIIEDTLLM 436 (520)
Q Consensus 416 s~Ig~~~~Ig~~~~I~~~~i~ 436 (520)
+.||.+|.||++|+|..++.+
T Consensus 142 a~IG~~v~IG~nv~I~~g~~I 162 (269)
T TIGR00965 142 ATVGSCAQIGKNVHLSGGVGI 162 (269)
T ss_pred cEECCCCEECCCCEEcCCccc
Confidence 444445555555544444433
No 133
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.10 E-value=7.9e-10 Score=101.71 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=79.2
Q ss_pred ceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECC
Q 010006 399 DSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 473 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 473 (520)
+..||++|+|++ |.|.. +.||++|.|+++|.|.++..+.+. ......+.||+++ .|++++.+.+++|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~---~~~~~~v~Ig~~~---~Ig~~~~i~~~~Ig~ 94 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSK---GVAFFPLHIGDYV---FIGENCVVNAAQIGS 94 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCC---CccccCeEECCcc---EECCCCEEEeeEEcC
Confidence 455666666665 55553 699999999999999987654431 1112467788888 799999999999999
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeC
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~ 515 (520)
++.||++++|..+..+++.+++++++.|.++ +.|+++++++
T Consensus 95 ~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~-~~i~~~~vv~ 135 (161)
T cd03359 95 YVHIGKNCVIGRRCIIKDCVKILDGTVVPPD-TVIPPYSVVS 135 (161)
T ss_pred CcEECCCCEEcCCCEECCCcEECCCCEECCC-CEeCCCCEEe
Confidence 9999999999876666666555555555555 5555555554
No 134
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=4.3e-10 Score=120.73 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=50.8
Q ss_pred ccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEc------------------ccEEECCcccccccc-ccccccCC
Q 010006 395 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE------------------DTLLMGADYYETDAD-RRFLAAKG 454 (520)
Q Consensus 395 ~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~------------------~~~i~~~~~~~~~~~-~~~~~~~~ 454 (520)
+.|.+++|+++|.|++ |.|.+++||++|.||++|+|. +++++++........ .++.+|++
T Consensus 300 ~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~ 379 (456)
T PRK14356 300 CWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAG 379 (456)
T ss_pred eEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCC
Confidence 3445556666666665 555555555555555554443 334333322211110 23445554
Q ss_pred CcceeeCCCCEE--------cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 455 SVPIGIGKNSHI--------KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 455 ~~~~~Ig~~~~i--------~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+ .||+++.+ .+++|++++.||.++.+.. ..++|++++|++|
T Consensus 380 ~---~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~------~~~ig~~~~i~~~ 428 (456)
T PRK14356 380 A---NIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVA------PVTIGDGALVGAG 428 (456)
T ss_pred C---EECCCceeeccccccCCCCEECCCcEEcCCCEEeC------CcEECCCCEEcCC
Confidence 4 45555543 1355666666666665554 4456666666666
No 135
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=4.9e-10 Score=120.01 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=70.9
Q ss_pred CCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccc-cccccccCCCcceeeCCCC
Q 010006 388 PPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDA-DRRFLAAKGSVPIGIGKNS 464 (520)
Q Consensus 388 ~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~Ig~~~ 464 (520)
.++.+..+.+.+++|+++|.|++ +.|. +++||++|+||++|.+.++++..++...... -..++||+++ .||.++
T Consensus 295 ~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~---~ig~~~ 371 (448)
T PRK14357 295 NNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNV---NIGAGT 371 (448)
T ss_pred CCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCc---EECCCc
Confidence 33333334456788999999998 8886 6999999999999999988876654221111 1245666666 566666
Q ss_pred EEc--------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 465 HIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 465 ~i~--------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.+. .++|++++.||.++.|.++ .++++++.|++|
T Consensus 372 ~~~~~~~~~~~~~~Igd~~~ig~~~~i~~g------v~Ig~~~~i~ag 413 (448)
T PRK14357 372 ITCNYDGKKKNPTFIEDGAFIGSNSSLVAP------VRIGKGALIGAG 413 (448)
T ss_pred ccccccccccCCcEECCCCEECCCCEEeCC------cEECCCCEEcCC
Confidence 552 3666666777666666544 455555555555
No 136
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.08 E-value=9.9e-10 Score=98.52 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=15.4
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMG 437 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~ 437 (520)
+.||++|+|+. ++.|+.++.||++|.|...+.++
T Consensus 32 ~~IG~~~~I~~----~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 32 AYVDEGTMVDS----WATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CEECCCeEEcC----CCEECCCCEECCCCEECCCCEEC
Confidence 44555555554 34444444444444444444333
No 137
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.5e-10 Score=122.03 Aligned_cols=94 Identities=19% Similarity=0.332 Sum_probs=81.8
Q ss_pred CCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCC
Q 010006 377 SAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG 454 (520)
Q Consensus 377 ~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~ 454 (520)
.+.+..+..++.+++|. +++|.|++||.||.||. +.|++|+|+.+|+||+||.|++++++++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 45566666777777776 78889999999999998 9999999999999999999999999987
Q ss_pred CcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCc
Q 010006 455 SVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSV 489 (520)
Q Consensus 455 ~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v 489 (520)
+.|++++++. +|+++-++.+|++-++..+..+
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 6899999996 8999999999999988766555
No 138
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.07 E-value=7.9e-10 Score=101.05 Aligned_cols=100 Identities=15% Similarity=0.295 Sum_probs=68.9
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-----cceEECCC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAIIDKN 474 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~ 474 (520)
+.|.++++|.+ ++.||++|.|+++|.|.... ..+.||+++ .|+++|+| .+++|+++
T Consensus 7 ~~i~~~a~i~g----~v~IG~~~~I~~~~~i~~~~------------~~i~IG~~~---~Ig~~~~I~~~~~~~~~Ig~~ 67 (155)
T cd04745 7 SFVHPTAVLIG----DVIIGKNCYIGPHASLRGDF------------GRIVIRDGA---NVQDNCVIHGFPGQDTVLEEN 67 (155)
T ss_pred eEECCCCEEEc----cEEECCCCEECCCcEEeCCC------------CcEEECCCC---EECCCCEEeecCCCCeEEcCC
Confidence 44555555443 67788888888888776520 123344455 68888888 56888888
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.||.++++.+ ..+++.+.++.+++|.++ ++|+++++|+++++|
T Consensus 68 ~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~v 111 (155)
T cd04745 68 GHIGHGAILHG-CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAFV 111 (155)
T ss_pred CEECCCcEEEC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCEe
Confidence 88888887753 667777777777777777 777777777777654
No 139
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.07 E-value=8e-10 Score=88.65 Aligned_cols=65 Identities=26% Similarity=0.465 Sum_probs=54.1
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
||++|.|++ +.|.+++||++|.|+++|+|.+++++++ +.|+++++|.+++|+++++||++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 567777776 6677889999999999999998888775 47899999999999999998888
Q ss_pred cEEec
Q 010006 481 VKIVN 485 (520)
Q Consensus 481 ~~i~~ 485 (520)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd05787 63 CTIPP 67 (79)
T ss_pred CEECC
Confidence 87754
No 140
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.07 E-value=5.7e-10 Score=120.45 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=85.4
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccccc-ccccccCCCcceeeCCCCEEc-ceEECC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK-RAIIDK 473 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 473 (520)
+++.||++|.|++ |.|. ++.||++|+|+++|.|+++++++++.....+. .++.+|+++ .||+++.+. +++|++
T Consensus 269 ~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~---~ig~~~~i~~~~~Ig~ 345 (481)
T PRK14358 269 DTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGS---DVGPFARLRPGTVLGE 345 (481)
T ss_pred CCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCce---EECCccEEcCCcEECC
Confidence 4678899999987 8888 68899999999999999999998877665443 457788887 788888886 788888
Q ss_pred CCEECCCcEEec-----CCCcC-----CcccccCCeEEccC------------eEEEcCCCEeCCCccC
Q 010006 474 NARIGDNVKIVN-----SDSVQ-----EAARETDGYFIKSG------------IVTIIKDALIPSGTII 520 (520)
Q Consensus 474 ~~~Ig~~~~i~~-----~~~v~-----~~~~~~~~~~I~~~------------~v~Ig~~~~i~~gtvi 520 (520)
+++||+++.|.+ +..++ +..++|++|.|+.+ .++||+++.|+++++|
T Consensus 346 ~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i 414 (481)
T PRK14358 346 GVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTL 414 (481)
T ss_pred CCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEE
Confidence 888888666432 22221 11334444444433 1467777777777653
No 141
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.06 E-value=7.1e-10 Score=105.04 Aligned_cols=102 Identities=14% Similarity=0.242 Sum_probs=73.6
Q ss_pred ECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEECCC
Q 010006 402 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKN 474 (520)
Q Consensus 402 Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~ 474 (520)
|+++++|.+ +.|. ++.||++|.|+.+|+|.... ..+.|++++ .||++|.|+ +++|+++
T Consensus 13 i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~------------~~i~Ig~~~---~Ig~~~~I~~~~~~~siIg~~ 77 (196)
T PRK13627 13 VHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDY------------GRLIVQAGA---NLQDGCIMHGYCDTDTIVGEN 77 (196)
T ss_pred cCCCeEECCCCEEECceEECCCCEECCCCEEecCC------------ccEEECCCC---EECCCCEEeCCCCCCCEECCC
Confidence 344444444 3332 67889999999888887642 012222333 566666663 5899999
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.||.++++.+ ..+++.+++|.++.|.+| ++||++++|++||+|
T Consensus 78 ~~Ig~~a~i~g-~vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~V 121 (196)
T PRK13627 78 GHIGHGAILHG-CVIGRDALVGMNSVIMDG-AVIGEESIVAAMSFV 121 (196)
T ss_pred CEECCCcEEee-EEECCCCEECcCCccCCC-cEECCCCEEcCCCEE
Confidence 99999998865 558888889999999888 889999999999875
No 142
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.05 E-value=7.4e-10 Score=104.03 Aligned_cols=29 Identities=41% Similarity=0.717 Sum_probs=15.3
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~ 431 (520)
++.|+++|+|++ +++|+.+++||++|.|.
T Consensus 96 ~~~ig~~~~i~~----~~~i~~~~~ig~~~~i~ 124 (197)
T cd03360 96 SAVIGEGCVIMA----GAVINPDARIGDNVIIN 124 (197)
T ss_pred CCEECCCCEEcC----CCEECCCCEECCCeEEC
Confidence 345566655554 34555555555555554
No 143
>PLN02296 carbonate dehydratase
Probab=99.04 E-value=1.1e-09 Score=108.36 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=77.3
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----------
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK----------- 467 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~----------- 467 (520)
.|+++++|.+ +.|. ++.||++|.|+.+|.|.... .++.||+++ .|++++.|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~------------~~I~IG~~~---~I~d~~vI~~~~~~~~g~~~ 118 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV------------NSISVGSGT---NIQDNSLVHVAKTNLSGKVL 118 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC------------CceEECCCC---EECCCCEEEeCCCcccCCCC
Confidence 3555666655 4443 67788888888888876542 123444455 677777774
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++||++|.||.+++|. ++.+++.+.++.++.|.+| ++|+++++|++|++|
T Consensus 119 ~siIG~~v~IG~~avI~-g~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 119 PTIIGDNVTIGHSAVLH-GCTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred CcEeCCCCEECCCceec-CCEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 68999999999999885 4678888889999999999 899999999999875
No 144
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.03 E-value=1.2e-09 Score=88.44 Aligned_cols=67 Identities=24% Similarity=0.453 Sum_probs=60.9
Q ss_pred cccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCC
Q 010006 396 DVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN 474 (520)
Q Consensus 396 ~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~ 474 (520)
.+.+++|+++|.|+. +.|.+++|++++.|+++|.|.+++++++ +.|++++.+.+|+|+++
T Consensus 13 ~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~~v~~~ii~~~ 73 (81)
T cd04652 13 SIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKCKLKDCLVGSG 73 (81)
T ss_pred EEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCCEEccCEECCC
Confidence 346789999999998 9999999999999999999999999876 58999999999999999
Q ss_pred CEECCCc
Q 010006 475 ARIGDNV 481 (520)
Q Consensus 475 ~~Ig~~~ 481 (520)
++|+++.
T Consensus 74 ~~i~~~~ 80 (81)
T cd04652 74 YRVEAGT 80 (81)
T ss_pred cEeCCCC
Confidence 9999874
No 145
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.03 E-value=1.1e-09 Score=117.58 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=32.9
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCc
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGAD 439 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~ 439 (520)
.++.||++|.|++ |.|. +++||++|.|+++|+|.++++++++
T Consensus 267 ~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~ 310 (459)
T PRK14355 267 RGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDV 310 (459)
T ss_pred CCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCC
Confidence 4566777777776 7666 6889999999999999888777663
No 146
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.03 E-value=1.8e-09 Score=91.82 Aligned_cols=78 Identities=27% Similarity=0.410 Sum_probs=61.9
Q ss_pred EECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 401 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 401 ~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
.|+++|.| .+|+||.+|.|+ ++.|++++++++ +.|++++.|.+++|++++.||++
T Consensus 3 ~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~ 57 (104)
T cd04651 3 YIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRN 57 (104)
T ss_pred eecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCC
Confidence 45555554 488999999999 999999999886 58999999999999999999999
Q ss_pred cEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCC
Q 010006 481 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 517 (520)
Q Consensus 481 ~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~g 517 (520)
+.+.+ +.|+++ +.|++++.|..+
T Consensus 58 ~~i~~-------------siig~~-~~Ig~~~~v~~~ 80 (104)
T cd04651 58 AVIRR-------------AIIDKN-VVIPDGVVIGGD 80 (104)
T ss_pred CEEEe-------------EEECCC-CEECCCCEECCC
Confidence 99964 555555 555555555443
No 147
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.02 E-value=1.3e-09 Score=102.92 Aligned_cols=102 Identities=13% Similarity=0.274 Sum_probs=71.9
Q ss_pred ECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-----cceEECCC
Q 010006 402 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAIIDKN 474 (520)
Q Consensus 402 Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~ 474 (520)
|+++++|.+ +.|. +..||++|.|+++|.|.... ..+.||+++ .||++|+| .+++|+++
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~------------g~i~Ig~~t---~Ig~~~~I~~~~~~~siIg~~ 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDF------------GRIVLKEGA---NIQDNCVMHGFPGQDTVVEEN 75 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccC------------CceEECCCC---EECCCeEEeccCCCCCeECCC
Confidence 455555554 4333 67888888888888886430 123334444 67888877 46889999
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.||.+++|.+ +.+++.+.++.++.|.++ ++||++++|++|++|
T Consensus 76 ~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags~V 119 (192)
T TIGR02287 76 GHVGHGAILHG-CIVGRNALVGMNAVVMDG-AVIGENSIVAASAFV 119 (192)
T ss_pred CEECCCCEEcC-CEECCCCEECCCcccCCC-eEECCCCEEcCCCEE
Confidence 99998888754 677777778777777777 778888888888754
No 148
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.02 E-value=9.3e-09 Score=105.64 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
.+.+||||||+|+||+ .+|+|+|+.|+ |||+|+++.+... +++|+|+++... .. + +.+
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~----~~~-------- 217 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-G----TPL-------- 217 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--hh-h----ccc--------
Confidence 5789999999999998 69999999987 9999999988764 789988885421 10 0 000
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHH
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAH 228 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h 228 (520)
..+.++.. ..+..|...+|+.++.... .+++++++||+ +.+.+ +..+++.+
T Consensus 218 ~~v~~I~D------~~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 218 ENLPTLPD------RGESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred cCCeEEeC------CCCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 00222221 1223799999999997654 35789999999 66655 77777765
No 149
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.99 E-value=2e-09 Score=99.35 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=18.7
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCc
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 518 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gt 518 (520)
++||++|.|...+.+.+...+++++.|+.+ ++|.++..|++++
T Consensus 84 ~~IGd~~~Ig~~a~I~~gv~Ig~~~~Igag-svV~~~~~i~~~~ 126 (164)
T cd04646 84 LKIGNNNVFESKSFVGKNVIITDGCIIGAG-CKLPSSEILPENT 126 (164)
T ss_pred eEECCCCEEeCCCEECCCCEECCCCEEeCC-eEECCCcEECCCe
Confidence 444444444444444444444444444444 4444444444443
No 150
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.99 E-value=2.3e-09 Score=114.74 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=78.2
Q ss_pred cCCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccc-ccccc
Q 010006 375 DRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDA-DRRFL 450 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~-~~~~~ 450 (520)
.+.+.|...+.+..++.+. .+.+.+++||++|.|+. +.|. +|+||++|.||++|.|.++.+..+....... -.+++
T Consensus 278 ~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ 357 (446)
T PRK14353 278 EPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDAT 357 (446)
T ss_pred CCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcE
Confidence 3334444444444444443 34456799999999998 8888 8999999999999999887776654322111 13456
Q ss_pred ccCCCcceeeCCCCEEc--------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 451 AAKGSVPIGIGKNSHIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 451 ~~~~~~~~~Ig~~~~i~--------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
||+++ .||.++++. +++||+++.||.++.|.+ ..+++++++|+++
T Consensus 358 ig~~~---~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~------~~~Ig~~~~ig~~ 410 (446)
T PRK14353 358 IGAGA---NIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVA------PVTIGDGAYIASG 410 (446)
T ss_pred EcCCc---EECCceeeeccccccCCCcEECCCcEECCCCEEeC------CCEECCCCEECCC
Confidence 66666 677776551 466666666666666654 4555666666666
No 151
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.98 E-value=4.6e-08 Score=97.24 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=125.7
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecC---CccchhHHHHHHhHh--------CCCCeEEEEeccChhHHHHHHHHhh
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN--------SNISKIYVLTQFNSASLNRHLSRAY 158 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~---G~~plI~~~l~~l~~--------~gi~~I~Iv~~~~~~~i~~~l~~~~ 158 (520)
+.+||||||.||||+ ...||+|+||+ |+ |+|++.++++.. .+|..+++...+..+++.+++++..
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 368999999999996 68999999998 76 999999999976 3466666666778889999999843
Q ss_pred -hccCCCCcCCCeEEEeeccc-----CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCce-eccc-cHHHH
Q 010006 159 -ASNMGGYKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH-LYRM-DYERF 224 (520)
Q Consensus 159 -~~~~~~~~~~~~v~vl~~~~-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~l 224 (520)
....-..|..+.+..+.... ......| +.|.++-+... ++.+...+.+++.+...|. +... |.. +
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~-~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL-F 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH-H
Confidence 11100011111111111110 0011123 35666554422 2334445678899999999 4444 433 5
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEEeCCCC--CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEE
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIy 302 (520)
+-.+...+.++..-+.+....+ ..-|.+...++| .++++.+-|......... . +.............++...
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~--~---~~~~~~~~~~~~~~n~~~~ 229 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVN--N---QIPKDIDDAPFFLFNTNNL 229 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhcccc--c---cCcCCCCceeeccceEEEE
Confidence 6666677778776666544322 334555543224 477777766543221000 0 0000011122456789999
Q ss_pred EEeHHHHHHHHh
Q 010006 303 VISKDVMLNLLR 314 (520)
Q Consensus 303 ifs~~vl~~ll~ 314 (520)
+|+.+.+.++++
T Consensus 230 ~~~l~~l~~~~~ 241 (266)
T cd04180 230 INFLVEFKDRVD 241 (266)
T ss_pred EEEHHHHHHHHH
Confidence 999999887765
No 152
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.98 E-value=3e-09 Score=85.88 Aligned_cols=63 Identities=21% Similarity=0.395 Sum_probs=53.2
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~ 479 (520)
+.|++++.|++ +++||++|.||++|+|++++++++ +.|++++.|.++++++++.||+
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 45566666653 789999999999999999999886 5899999999999999999999
Q ss_pred CcEEec
Q 010006 480 NVKIVN 485 (520)
Q Consensus 480 ~~~i~~ 485 (520)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 988864
No 153
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.97 E-value=3.4e-09 Score=103.67 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=19.2
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+++|++||.||.+|.|.++..+++.+.++.|++|+.+
T Consensus 173 ~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 173 PTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence 3566666666666666554444444444444444444
No 154
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.97 E-value=2.4e-09 Score=114.67 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=84.9
Q ss_pred CccccCCCcCCCceee-----------cccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccc
Q 010006 378 APIYTQPRYLPPSKML-----------DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETD 444 (520)
Q Consensus 378 ~~i~~~~~~~~~~~i~-----------~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~ 444 (520)
..+...+.+.+.+.+. .+.+.+++|+++|.|++ |.|. +++||.+|.|++++.|.++++.++......
T Consensus 281 ~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~ 360 (450)
T PRK14360 281 TVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHL 360 (450)
T ss_pred cEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccc
Confidence 3455555555555443 33345788999999998 8887 799999999999999988877665433221
Q ss_pred c-cccccccCCCcceeeCCCCEEcc--eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcC
Q 010006 445 A-DRRFLAAKGSVPIGIGKNSHIKR--AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 510 (520)
Q Consensus 445 ~-~~~~~~~~~~~~~~Ig~~~~i~~--~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~ 510 (520)
. -..+.||+++ .||.++.+.+ .+-+.+++||++|.|+..+.+..+.+++++++|++| ++|-+
T Consensus 361 ~~~~~~~i~~~~---~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~-~~v~~ 425 (450)
T PRK14360 361 SYIGDATLGEQV---NIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAG-STITK 425 (450)
T ss_pred eecCCceecCCc---EECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCC-CEECc
Confidence 1 0223344444 3444444321 111447888888888888888888888888888888 55444
No 155
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.96 E-value=3.2e-09 Score=114.86 Aligned_cols=80 Identities=13% Similarity=0.264 Sum_probs=48.2
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 474 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 474 (520)
.++.||++|.|++ +.|. +++||++|.|+++|.|+++++++++..+...-.++.+++++ .||+++.+. +++|+++
T Consensus 270 ~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~---~Ig~~~~i~~~~vIg~~ 346 (482)
T PRK14352 270 VDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGA---TVGPFTYLRPGTVLGEE 346 (482)
T ss_pred CCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCC---EECCCeEecCCcEEcCC
Confidence 3456666666666 6655 57777777777777777766666544432222455555555 566666665 5666555
Q ss_pred CEECCC
Q 010006 475 ARIGDN 480 (520)
Q Consensus 475 ~~Ig~~ 480 (520)
+.||.+
T Consensus 347 ~~ig~~ 352 (482)
T PRK14352 347 GKLGAF 352 (482)
T ss_pred CEECCc
Confidence 555533
No 156
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.95 E-value=3.4e-09 Score=101.15 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=30.4
Q ss_pred ccCCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcc
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED 432 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~ 432 (520)
+++.+.+. .+.+.+++.+. ++.+.+++||++|.|+. |.+.++.||++|.|++++.|..
T Consensus 11 I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 11 LHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred ECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 34444442 23444444443 34445556666666665 5555566666666666665543
No 157
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.95 E-value=6.7e-09 Score=98.34 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=19.6
Q ss_pred eeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 459 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 459 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.|+.++.+. ++.|++++.||.++++.. ...+++++.|+.+
T Consensus 143 ~i~~~~~i~~~~~ig~~~~ig~~~~v~~------~~~i~~~~~i~~~ 183 (201)
T TIGR03570 143 HIAPGVTLSGGVVIGEGVFIGAGATIIQ------GVTIGAGAIVGAG 183 (201)
T ss_pred EECCCCEEeCCcEECCCCEECCCCEEeC------CCEECCCCEECCC
Confidence 455555554 455555555555555543 2334444444444
No 158
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.95 E-value=3.6e-09 Score=113.67 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=55.3
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 474 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 474 (520)
.++.||++|.|++ +.|. ++.||++|.|+++|.|.++++++++......-.++.+|+++ .||++++|. +++|+++
T Consensus 264 ~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~---~Ig~~~~i~~~~~Ig~~ 340 (458)
T PRK14354 264 ADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNV---TVGPFAHLRPGSVIGEE 340 (458)
T ss_pred CCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCc---EECCceEecCCCEEeCC
Confidence 3456677777766 6665 57777777777777777777766655543333556666666 677777776 6777777
Q ss_pred CEECCCcEEe
Q 010006 475 ARIGDNVKIV 484 (520)
Q Consensus 475 ~~Ig~~~~i~ 484 (520)
++||.++.|.
T Consensus 341 ~~i~~~~~i~ 350 (458)
T PRK14354 341 VKIGNFVEIK 350 (458)
T ss_pred cEECCceEEe
Confidence 7776666553
No 159
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.95 E-value=7.1e-09 Score=102.29 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=37.9
Q ss_pred ECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-cceEECCCCEEC
Q 010006 402 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIG 478 (520)
Q Consensus 402 Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig 478 (520)
|+.|+.|++ +.|. ++.||.+|.||++|+|..++.+++.. +.....+++||+++ .||.++.| .+++|++++.||
T Consensus 129 V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~-~~~~~~~viIgDnv---~IGa~s~I~~Gv~IGdgavIg 204 (272)
T PRK11830 129 VNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL-EPLQANPVIIEDNC---FIGARSEVVEGVIVEEGSVLG 204 (272)
T ss_pred ECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc-cccCcCCeEEcCCC---EECCCCEEcCCCEECCCCEEc
Confidence 333444443 3333 45555555666666665555554321 11111234455554 45555554 255555555555
Q ss_pred CCcEEecC
Q 010006 479 DNVKIVNS 486 (520)
Q Consensus 479 ~~~~i~~~ 486 (520)
+++.|..+
T Consensus 205 ag~vV~~g 212 (272)
T PRK11830 205 MGVFLGQS 212 (272)
T ss_pred CCCEEcCC
Confidence 55555443
No 160
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.94 E-value=4.4e-09 Score=95.88 Aligned_cols=100 Identities=17% Similarity=0.291 Sum_probs=65.6
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-----eEECC
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AIIDK 473 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii~~ 473 (520)
+++|+++|.|.+ +..||+++.|+++|.|..+. .++.||+++ .|++++.|.. ++|++
T Consensus 5 ~~~i~~~a~i~g----~v~ig~~~~I~~~~~I~~~~------------~~~~IG~~~---~I~~~~~I~~~~~~~~~Ig~ 65 (153)
T cd04645 5 SAFIAPNATVIG----DVTLGEGSSVWFGAVLRGDV------------NPIRIGERT---NIQDGSVLHVDPGYPTIIGD 65 (153)
T ss_pred CeEECCCCEEEE----eEEECCCcEEcCCeEEECCC------------CceEECCCC---EECCCcEEecCCCCCeEEcC
Confidence 344555555543 67788888888888777541 123344444 6777777765 58888
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++.|+.++++.+ ..+++.+.++.++.+..+ ++|++++.|+++++
T Consensus 66 ~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~~ 109 (153)
T cd04645 66 NVTVGHGAVLHG-CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGSL 109 (153)
T ss_pred CcEECCCcEEee-eEECCCCEECCCCEEcCC-CEECCCCEECCCCE
Confidence 888888888765 556666666666666666 66666666666654
No 161
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.94 E-value=4.6e-09 Score=97.25 Aligned_cols=102 Identities=13% Similarity=0.149 Sum_probs=44.2
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEECC
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDK 473 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~ 473 (520)
.|+++|.|.+ +.|. +..||++|.|+++|.|.... ..++.||+++ .|++++.|. .+.|++
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~-----------~~~v~IG~~~---~I~~~~~i~~~~~~~v~Ig~ 69 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADE-----------GTPIIIGANV---NIQDGVVIHALEGYSVWIGK 69 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCC-----------CCcEEECCCC---EECCCeEEEecCCCCEEECC
Confidence 3444444444 3333 45555555555555554320 0123333333 344444442 344444
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCc
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 518 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gt 518 (520)
++.|+.++.|.+...+++.+.++.++.|. + ++||+++.|++++
T Consensus 70 ~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~-~~Ig~~~~Ig~~s 112 (167)
T cd00710 70 NVSIAHGAIVHGPAYIGDNCFIGFRSVVF-N-AKVGDNCVIGHNA 112 (167)
T ss_pred CceECCCCEEeCCEEECCCCEECCCCEEE-C-CEECCCCEEcCCC
Confidence 44444444444433444444444443332 2 3444444444444
No 162
>PLN02472 uncharacterized protein
Probab=98.94 E-value=3.7e-09 Score=103.38 Aligned_cols=100 Identities=12% Similarity=0.246 Sum_probs=72.1
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----------c
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----------R 468 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----------~ 468 (520)
+.|.+++.|.+ ++.||+++.|+.+++|... . ....||+++ .|+++|+|+ +
T Consensus 66 ~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd------~------~~I~IG~~t---~Ig~~~vI~~~~~~~~~i~~~ 126 (246)
T PLN02472 66 AYVAPNVVLAG----QVTVWDGASVWNGAVLRGD------L------NKITVGFCS---NVQERCVLHAAWNSPTGLPAE 126 (246)
T ss_pred CEECCCCEEec----CEEECCCCEEcCCCEEecC------C------cceEECCCC---EECCCCEEeecCccccCCCCC
Confidence 44444444443 5677777777777766543 1 123444455 677777773 6
Q ss_pred eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 469 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++|+++|.||.+|+|. .+.+++++++|.++.|.++ ++|+++++|++|++|
T Consensus 127 tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV 176 (246)
T PLN02472 127 TLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEG-SLVETHSILEAGSVL 176 (246)
T ss_pred cEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 8999999999999995 5788888888888888888 888888888888764
No 163
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.94 E-value=3.7e-09 Score=91.79 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=45.0
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 475 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 475 (520)
.+++||++|.|+. +.|. ++.||++|.|++++.|.+..+.+. .+..++.+.+++|++++
T Consensus 15 ~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~ 74 (119)
T cd03358 15 NDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGA 74 (119)
T ss_pred CCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCc
Confidence 3577778887776 5553 567777777777666666544432 24445666777777777
Q ss_pred EECCCcEEecCC
Q 010006 476 RIGDNVKIVNSD 487 (520)
Q Consensus 476 ~Ig~~~~i~~~~ 487 (520)
.||.++.+.+..
T Consensus 75 ~Ig~~~~v~~~~ 86 (119)
T cd03358 75 SIGANATILPGV 86 (119)
T ss_pred EECcCCEEeCCc
Confidence 777777775433
No 164
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.93 E-value=4e-09 Score=99.62 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=62.5
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCc----cccccccccccccCCCcceeeCCCCEEc-ceEEC
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGAD----YYETDADRRFLAAKGSVPIGIGKNSHIK-RAIID 472 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~ 472 (520)
++||+++.|++ +.|. +++|--.++||++++|-....++.+ -|.-+ .-.+.||+++ .|.++++|. .+.-|
T Consensus 28 ~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge-~T~l~IG~~n---~IRE~vTi~~GT~~g 103 (260)
T COG1043 28 CIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGE-PTRLIIGDNN---TIREFVTIHRGTVQG 103 (260)
T ss_pred EEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCC-ceEEEECCCC---eEeeEEEEeccccCC
Confidence 55555555554 4444 4555555556666666555555542 11110 1223334443 344444443 22223
Q ss_pred -CCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCc
Q 010006 473 -KNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 518 (520)
Q Consensus 473 -~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gt 518 (520)
.-.+||+|+.++.++.+...+++|++|++..+. |.||+.++|+..+
T Consensus 104 ~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 104 GGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred ceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 345677777777777777777777777766552 6677777777655
No 165
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.92 E-value=6.2e-09 Score=94.92 Aligned_cols=102 Identities=15% Similarity=0.238 Sum_probs=71.1
Q ss_pred ECCCcEEee-e-EEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEECCC
Q 010006 402 IGEGCVIKN-C-KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKN 474 (520)
Q Consensus 402 Ig~g~~I~~-~-~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~ 474 (520)
|++.++|.+ + .|.+..||+++.|..++.|+.-. .+..||+++ -|.+|+.|+ .+.||++
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~------------~~I~IG~~t---NIQDg~ViH~~~~~p~~IG~~ 78 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV------------EPIRIGART---NIQDGVVIHADPGYPVTIGDD 78 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccC------------CceEECCCc---eecCCeEEecCCCCCeEECCC
Confidence 444455554 2 22366777777777777765432 234444454 566666664 3788888
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++||.+++|.+ +.+++.+.||-|+.|.+| ++||++|+|++|++|
T Consensus 79 vtIGH~aivHG-c~Ig~~~lIGmgA~vldg-a~IG~~~iVgAgalV 122 (176)
T COG0663 79 VTIGHGAVVHG-CTIGDNVLIGMGATVLDG-AVIGDGSIVGAGALV 122 (176)
T ss_pred cEEcCccEEEE-eEECCCcEEecCceEeCC-cEECCCcEEccCCcc
Confidence 88888888876 788888888888888888 888888888888875
No 166
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.91 E-value=7.5e-09 Score=94.47 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=62.5
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-----eEECCC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AIIDKN 474 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii~~~ 474 (520)
++|.++++|.+ ++.||++|.|+++|.|.... .+++||+++ .|++++.|.. ++|+++
T Consensus 7 ~~i~~~~~i~~----~v~iG~~~~I~~~a~I~~~~------------~~i~Ig~~~---~Ig~~~~I~~~~~~~~~Ig~~ 67 (154)
T cd04650 7 AYVHPTSYVIG----DVVIGELTSVWHYAVIRGDN------------DSIYIGKYS---NVQENVSIHTDHGYPTEIGDY 67 (154)
T ss_pred eEECCCCEEEe----eEEECCCCEEcCCeEEEcCC------------CcEEECCCC---EECCCCEEEeCCCCCeEECCC
Confidence 44555555543 56778888888888777650 012222233 6777777763 677777
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
+.|+.++++.+ ..+++.++++.++.+..+ ++|++++++++++.
T Consensus 68 ~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~vg~~~~ 110 (154)
T cd04650 68 VTIGHNAVVHG-AKVGNYVIVGMGAILLNG-AKIGDHVIIGAGAV 110 (154)
T ss_pred CEECCCcEEEC-cEECCCCEEcCCCEEeCC-CEECCCCEECCCCE
Confidence 77777777743 456666666666666666 66777777766654
No 167
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.91 E-value=9.1e-09 Score=92.27 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=30.8
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.++|++++.||.+++|..+..+++.+.++.++.|.++ +.|+++ ++|++
T Consensus 75 ~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~-~~I~~~---~~~~~ 122 (139)
T cd03350 75 PVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS-TPIYDR---ETGEI 122 (139)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCC-eEeccc---CcccE
Confidence 3667777777777777666666666666666666666 666665 55554
No 168
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.90 E-value=1.2e-07 Score=96.62 Aligned_cols=212 Identities=15% Similarity=0.195 Sum_probs=125.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCC--ccchhHHHHHHhHhCC-----------CCeEEEEec-cChhHHHHH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA--NYRLIDIPVSNCLNSN-----------ISKIYVLTQ-FNSASLNRH 153 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G--~~plI~~~l~~l~~~g-----------i~~I~Iv~~-~~~~~i~~~ 153 (520)
.++.+||||||.|||| +...||+|+||++ ++|++++.++.+...+ .-.++|.++ +..+.+.++
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~ 90 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKF 90 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHH
Confidence 3689999999999999 4778999999973 2499999999998732 124567777 778899999
Q ss_pred HHHhhhccCCC----CcCCCeEEEeeccc-----CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCcee-c
Q 010006 154 LSRAYASNMGG----YKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHL-Y 217 (520)
Q Consensus 154 l~~~~~~~~~~----~~~~~~v~vl~~~~-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l-~ 217 (520)
+.+...|++.. .+....+..+.... .+....| +.|.++-.... ++.+...+.+++.+...|.+ .
T Consensus 91 ~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~ 170 (323)
T cd04193 91 FKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILV 170 (323)
T ss_pred HHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccc
Confidence 99854443311 01111111111110 0011112 35665544432 23344456789999999994 4
Q ss_pred cccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCce
Q 010006 218 RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYI 296 (520)
Q Consensus 218 ~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l 296 (520)
..---.++-.+.++++++.+-+.+....+ ..-|.++ .|..-+++++.|-|.......- .. .....+.
T Consensus 171 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~~----------~~-g~l~f~~ 238 (323)
T cd04193 171 KVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKRD----------AD-GELQYNA 238 (323)
T ss_pred cccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhccC----------cC-CcEeccc
Confidence 33223467777788899887666644222 3344444 4544567888777665432110 00 0000123
Q ss_pred eeeeEEEEeHHHHHHHHh
Q 010006 297 ASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 297 ~~~GIyifs~~vl~~ll~ 314 (520)
.+..+.+|+.+++.++++
T Consensus 239 ~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 239 GNIANHFFSLDFLEKAAE 256 (323)
T ss_pred chHhhheeCHHHHHHHHh
Confidence 344567889888887765
No 169
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.89 E-value=8.6e-09 Score=100.24 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=60.2
Q ss_pred ccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccc
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRF 449 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~ 449 (520)
+++.+.+...+.+.+++.+. ++.+ .+++||++|.|+. +.|. +++||++|.||.+|.|.+..- ......+
T Consensus 89 I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~-------~~~~~~v 161 (231)
T TIGR03532 89 IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIE-------PPSAKPV 161 (231)
T ss_pred ECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccc-------cccCCCe
Confidence 34444444444555555553 3333 4678888888887 7775 788888888888888765211 0112334
Q ss_pred cccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEe
Q 010006 450 LAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIV 484 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~ 484 (520)
.||+++ .||.++.|. ++.|++++.||+++++.
T Consensus 162 ~IGd~v---~IG~gsvI~~g~~Ig~~~~IgagsvV~ 194 (231)
T TIGR03532 162 VIEDNV---LIGANAVILEGVRVGKGAVVAAGAIVT 194 (231)
T ss_pred EECCCc---EECCCCEEcCCCEECCCCEECCCCEEc
Confidence 555555 566666663 66666666666666664
No 170
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.88 E-value=2.1e-08 Score=94.05 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=6.3
Q ss_pred eEECCCCEECCCcEE
Q 010006 469 AIIDKNARIGDNVKI 483 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i 483 (520)
++|+++|.||.++.+
T Consensus 151 ~~ig~~~~ig~~~~v 165 (197)
T cd03360 151 VTIGEGAFIGAGATI 165 (197)
T ss_pred cEECCCCEECCCCEE
Confidence 344444444444433
No 171
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.88 E-value=7e-09 Score=83.12 Aligned_cols=78 Identities=28% Similarity=0.350 Sum_probs=60.7
Q ss_pred EECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCccccc
Q 010006 417 VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARET 496 (520)
Q Consensus 417 ~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~ 496 (520)
+||+++.|+++|.|.++++..+ +.|++++.|.+++|++++.||+++.|. ...+.+..+++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~-------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRN-------------------CKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccEECCC-------------------CEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEEC
Confidence 4789999999999988777654 589999999999999999999999996 45556666666
Q ss_pred CCeEEccCeEEEcCCCEeC
Q 010006 497 DGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 497 ~~~~I~~~~v~Ig~~~~i~ 515 (520)
+++.|+.+ ++|++++.|+
T Consensus 61 ~~~~i~~~-~~v~~~~~ig 78 (79)
T cd05787 61 KGCTIPPG-SLISFGVVIG 78 (79)
T ss_pred CCCEECCC-CEEeCCcEeC
Confidence 66666666 5566665554
No 172
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.88 E-value=9.1e-09 Score=82.65 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=57.0
Q ss_pred ccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-eEEC
Q 010006 395 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AIID 472 (520)
Q Consensus 395 ~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~ 472 (520)
+.+.+++|+++|.|++ +.|.+++|+++|.|+++|.|.+++++++ +.|++++.+.+ ++++
T Consensus 12 ~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~~~i~~~~~ig 72 (79)
T cd03356 12 AIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGENVRVVNLCIIG 72 (79)
T ss_pred CEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCCCEEcCCeEEC
Confidence 3445689999999998 9999999999999999999999998775 57999988886 8888
Q ss_pred CCCEECC
Q 010006 473 KNARIGD 479 (520)
Q Consensus 473 ~~~~Ig~ 479 (520)
++++|++
T Consensus 73 ~~~~i~~ 79 (79)
T cd03356 73 DDVVVED 79 (79)
T ss_pred CCeEECc
Confidence 8888774
No 173
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.87 E-value=1.6e-08 Score=89.77 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=30.7
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCc
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 489 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v 489 (520)
++.||.+|.||++|.|. +.+-+. ..+.+.||+++ .||.++.| +..|++++.||+++++.....+
T Consensus 47 ~a~Ighd~~IG~~~~I~-~~l~G~------~~~pV~IG~~~---~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i 110 (147)
T cd04649 47 GVIVGKGSDVGGGASIM-GTLSGG------GNNVISIGKRC---LLGANSGI-GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred CEEECCCCEECCCCEEE-EECCCC------cccCEEECCCC---EECCCCEE-eEEECCCCEECCCCEEeCCeEE
Confidence 34555555555555555 222111 11335555555 45555555 4555555555555555543333
No 174
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.86 E-value=1.1e-08 Score=108.94 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=63.5
Q ss_pred CcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCC
Q 010006 385 RYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN 463 (520)
Q Consensus 385 ~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 463 (520)
.+.+++.+.++.+.+++||++|.|++ |.|.+|.||.+|.|+... |+++.+-+..+. ..+.||+++ .||.+
T Consensus 284 ~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~~~~~i~~~~~i-----~d~~Ig~~~---~ig~~ 354 (430)
T PRK14359 284 HIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-LNGVKAGHLSYL-----GDCEIDEGT---NIGAG 354 (430)
T ss_pred EECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-eccccccccccc-----cCCEECCCC---EECCC
Confidence 34444544445556777888888886 666666666666665533 333333222221 335566666 56666
Q ss_pred CEEc--------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCC
Q 010006 464 SHIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 511 (520)
Q Consensus 464 ~~i~--------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~ 511 (520)
+.+. .++||++|.||.++.|. .+.++|++++|++| ++|-++
T Consensus 355 ~~~~~~~~~~~~~~~ig~~~~ig~~~~i~------~~~~ig~~~~i~~g-~~v~~~ 403 (430)
T PRK14359 355 TITCNYDGKKKHKTIIGKNVFIGSDTQLV------APVNIEDNVLIAAG-STVTKD 403 (430)
T ss_pred ceEccccCccCcCCEECCCeEEcCCCEEe------CCcEECCCCEECCC-CEEccc
Confidence 6553 25666666666666665 45566667777777 444333
No 175
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=1.5e-07 Score=87.77 Aligned_cols=217 Identities=19% Similarity=0.200 Sum_probs=138.2
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|++.-|||+|-|.++|.. .|-+.+++|+ |||.|+|+++.+++ |++|+|-+ +++.|.+.-.+ |..+
T Consensus 1 ~~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~-ygak---- 66 (228)
T COG1083 1 MMKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK-YGAK---- 66 (228)
T ss_pred CcceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH-hCcc----
Confidence 466789999999999987 5999999987 99999999999998 57777666 66666554333 2111
Q ss_pred cCCCeEEEeecccCCCCCCCccCcH---HHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEE
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTA---DAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAAL 240 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~---~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~ 240 (520)
+.+..+. .-..+++ +++..++..+.. ..+.++.+.+-. |. ..+++..++.+.+.+.+..+.+.
T Consensus 67 -----~~~~Rp~------~LA~D~ast~~~~lh~le~~~~-~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~ 134 (228)
T COG1083 67 -----VFLKRPK------ELASDRASTIDAALHALESFNI-DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAV 134 (228)
T ss_pred -----ccccCCh------hhccCchhHHHHHHHHHHHhcc-ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEe
Confidence 1111111 1113333 444555544442 234477777766 44 46799999999988888777777
Q ss_pred ecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
+.+.++-..| . +.+|.+..+.|.|..... +-.+ -+.|..+..+|+++++.|.+ ..
T Consensus 135 e~e~~p~k~f---~-~~~~~~~~~~~~~~~~~r-rQ~L-------------pk~Y~~NgaiYi~~~~~l~e-------~~ 189 (228)
T COG1083 135 ECEHHPYKAF---S-LNNGEVKPVNEDPDFETR-RQDL-------------PKAYRENGAIYINKKDALLE-------ND 189 (228)
T ss_pred ecccchHHHH---H-hcCCceeecccCCccccc-cccc-------------hhhhhhcCcEEEehHHHHhh-------cC
Confidence 7653221222 2 234778888776643211 0011 12466788899999987752 11
Q ss_pred CCccccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhccc
Q 010006 321 NDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 321 ~~~~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~ 365 (520)
.-| +.+...|..+ ...+||++..|+..++..+..
T Consensus 190 ~~f-----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 190 CFF-----------IPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred cee-----------cCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 112 2344445554 458999999999999877654
No 176
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.1e-08 Score=102.71 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=78.7
Q ss_pred CccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCC
Q 010006 378 APIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 455 (520)
Q Consensus 378 ~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 455 (520)
+-+..++.+.+++++. ++.|+.|+||.+|.||+ +.|.+|+|.+|+.||+||.|++|+|..+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 4555667777888886 67789999999999999 9999999999999999999999999775
Q ss_pred cceeeCCCCEEcceEECCCCEECCCcEEecC
Q 010006 456 VPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 486 (520)
Q Consensus 456 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 486 (520)
+.||+++.+.+|+|+.+-+|.+..+..+.
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 58999999999999999999977666553
No 177
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.74 E-value=5.9e-08 Score=78.27 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=54.3
Q ss_pred cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-eEECCCC
Q 010006 398 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AIIDKNA 475 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~ 475 (520)
.+++|+++|.|+. |.|.+++|++++.|++++.|.+++++.+ +.|++++.+.. ++|++++
T Consensus 16 ~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~ 76 (80)
T cd05824 16 PNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDV 76 (80)
T ss_pred CCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCce
Confidence 5688999999987 9999999999999999999999988876 57899888885 7777777
Q ss_pred EECC
Q 010006 476 RIGD 479 (520)
Q Consensus 476 ~Ig~ 479 (520)
+||+
T Consensus 77 ~i~~ 80 (80)
T cd05824 77 TIKD 80 (80)
T ss_pred EECC
Confidence 7764
No 178
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.73 E-value=3.7e-08 Score=95.00 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=28.1
Q ss_pred CCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEEC
Q 010006 384 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMG 437 (520)
Q Consensus 384 ~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~ 437 (520)
.|+.|++.+. ..+.|++|++|.+ +.|. ++.++..+.|.-+++++.|...|
T Consensus 109 ~RI~p~a~VR----~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VG 160 (271)
T COG2171 109 VRIVPGAIVR----LGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVG 160 (271)
T ss_pred eeecCccEEe----eccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEEC
Confidence 5566666554 3455666666665 5555 55555555555555555555544
No 179
>PLN02694 serine O-acetyltransferase
Probab=98.73 E-value=3.6e-08 Score=97.50 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=52.1
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-cceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig 478 (520)
+.||+|++|... .+++||++|.||++|.|..++.+++..- ....+..+||+++ .||.++.| .++.||++|.||
T Consensus 167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g~-~~~~r~piIGd~V---~IGagA~Ilggi~IGd~a~IG 240 (294)
T PLN02694 167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGK-ACGDRHPKIGDGV---LIGAGATILGNVKIGEGAKIG 240 (294)
T ss_pred ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCccc-ccCCCccEECCCe---EECCeeEECCCCEECCCCEEC
Confidence 455666666531 1589999999999999988888876311 1112456666666 57777666 366777777777
Q ss_pred CCcEEe
Q 010006 479 DNVKIV 484 (520)
Q Consensus 479 ~~~~i~ 484 (520)
+++++.
T Consensus 241 AgSVV~ 246 (294)
T PLN02694 241 AGSVVL 246 (294)
T ss_pred CCCEEC
Confidence 776665
No 180
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.70 E-value=8.6e-08 Score=81.01 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=45.3
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCE
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 476 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 476 (520)
+++|+++|.|++ +.|. ++.||++|.||. .|+++++++. +.|+++++|.+++|+++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 456666666665 5555 466666666654 4666666664 4677777888888888888
Q ss_pred ECCCcEEec
Q 010006 477 IGDNVKIVN 485 (520)
Q Consensus 477 Ig~~~~i~~ 485 (520)
||+++.+.|
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 888877765
No 181
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.68 E-value=1e-05 Score=85.71 Aligned_cols=209 Identities=15% Similarity=0.236 Sum_probs=124.9
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCCC-eEEEEecc-ChhHHHHHHHHhhhc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQF-NSASLNRHLSRAYAS 160 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi~-~I~Iv~~~-~~~~i~~~l~~~~~~ 160 (520)
..++.+|.||||.||||+ -.-||.|+|+...+.+++..++++.. .|.+ ..+|-+++ ..++..++|++ |++
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 367999999999999999 46899999995555899998888754 3432 23555664 45678888887 332
Q ss_pred -cCC-CCcCCC-eEEEeecccCC-------CCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceecc-ccHHH
Q 010006 161 -NMG-GYKNEG-FVEVLAAQQSP-------ENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDYER 223 (520)
Q Consensus 161 -~~~-~~~~~~-~v~vl~~~~~~-------~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (520)
... ..|... +..+......+ .+..| +.|.++-.... ++.+...+.+++.+.+.|.+.. .|. .
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp-~ 231 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL-K 231 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-H
Confidence 110 001111 01111000000 11124 34555443322 3444455778999999999754 343 3
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEE
Q 010006 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (520)
Q Consensus 224 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIy 302 (520)
++..+..+++++++=+.+....+.. -|.++ .|..-+++++.+-|....... . ....-.+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~k-gG~l~~~dgk~~lvEysqvp~e~~~~f-~------------~~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADVK-GGTLISYEGKVQLLEIAQVPDEHVNEF-K------------SIEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCCC-ccEEEEECCEEEEEEEecCCHHHHHhh-c------------ccccceeeeeeeE
Confidence 6777778888887766654332222 34443 344446888888776543210 0 0112347789999
Q ss_pred EEeHHHHHHHHh
Q 010006 303 VISKDVMLNLLR 314 (520)
Q Consensus 303 ifs~~vl~~ll~ 314 (520)
+|+-+.++++++
T Consensus 298 w~~L~~l~~~~~ 309 (469)
T PLN02474 298 WVNLKAIKRLVE 309 (469)
T ss_pred EEEHHHHHHHhh
Confidence 999999988765
No 182
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.67 E-value=9.5e-08 Score=90.43 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=26.9
Q ss_pred ECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 471 IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 471 i~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|+++++||.++.+.....+++.++++.++.+..+ ++|+++++|++|++|
T Consensus 138 ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~-~~i~~~~~i~~~~~v 186 (201)
T TIGR03570 138 IGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG-VTIGAGAIVGAGAVV 186 (201)
T ss_pred ECCCCEECCCCEEeCCcEECCCCEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 3333333333333333333444444556777777 777777777777763
No 183
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.67 E-value=1.9e-06 Score=91.86 Aligned_cols=210 Identities=17% Similarity=0.177 Sum_probs=122.1
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecC---CccchhHHHHHHhHhC------------C-CCeEEEEe-ccChhHHH
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS------------N-ISKIYVLT-QFNSASLN 151 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~---G~~plI~~~l~~l~~~------------g-i~~I~Iv~-~~~~~~i~ 151 (520)
++.+||||||.||||+ ...||+|+||+ |+ |+++++++.+... + .-.++|.+ .+..+.+.
T Consensus 106 kvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~ 181 (482)
T PTZ00339 106 EVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTR 181 (482)
T ss_pred CeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHH
Confidence 6999999999999997 57999999994 55 9999999999864 1 12445555 47788899
Q ss_pred HHHHHhhhccCCC----CcCCCeEEEeecc--c----CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCce
Q 010006 152 RHLSRAYASNMGG----YKNEGFVEVLAAQ--Q----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH 215 (520)
Q Consensus 152 ~~l~~~~~~~~~~----~~~~~~v~vl~~~--~----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~ 215 (520)
+++.+...+++.. .|..+.+..+... . ++..-.| +.|.++-.... ++.+...+.+++.+...|.
T Consensus 182 ~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN 261 (482)
T PTZ00339 182 QFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDN 261 (482)
T ss_pred HHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCc
Confidence 9998744333211 0111111111110 0 0000112 35665544432 3344445678899999999
Q ss_pred e-ccccHHHHHHHHHhcCC-cEEEEEEecCcccCcceEEEEe-CCCCCEEEeeeCCChhhhhhcccccccccCCchhhcc
Q 010006 216 L-YRMDYERFIQAHRETDA-DITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (520)
Q Consensus 216 l-~~~dl~~ll~~h~~~~a-~~tl~~~~~~~~~~~~~g~v~~-d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
+ ...---.++-.+...++ ++.-.+.+.. +...-|+++. |..-.|+++.|-+....... . ......
T Consensus 262 ~L~k~~DP~flG~~~~~~~~~~~~kvvk~~--~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~-~---------~~~g~l 329 (482)
T PTZ00339 262 ILAKVLDPEFIGLASSFPAHDVLNKCVKRE--DDESVGVFCLKDYEWQVVEYTEINERILNND-E---------LLTGEL 329 (482)
T ss_pred ccccccCHHHhHHHHHCCchhheeeeecCC--CCCceeEEEEeCCcccEEEEeccChhhhhcc-c---------ccCCee
Confidence 5 43322345666666666 6544443322 2344566654 33346888888665432110 0 000111
Q ss_pred CCceeeeeEEEEeHHHHHHHHh
Q 010006 293 MPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 293 ~~~l~~~GIyifs~~vl~~ll~ 314 (520)
.-...++..++|+.++|.++.+
T Consensus 330 ~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred cccccceEEEEEEHHHHHHHhh
Confidence 1235678899999999987654
No 184
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.66 E-value=7.4e-08 Score=83.58 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=16.6
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.++.||++|.|.+.+.+.+...+++++.|+.+
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~ 97 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVGAG 97 (119)
T ss_pred CCcEECCCcEECcCCEEeCCcEECCCCEEccC
Confidence 35566666666654444444444444444444
No 185
>PRK10502 putative acyl transferase; Provisional
Probab=98.65 E-value=1e-07 Score=89.54 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=20.4
Q ss_pred eEECCCcEEee-eEEe---eeEECCCCEECCCCEEc
Q 010006 400 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~ 431 (520)
..||++|.|++ +.|. .+.||++|.|+++|.|.
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~ 107 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence 45566666665 5544 46777777777777764
No 186
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.65 E-value=1.4e-07 Score=86.69 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=36.4
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-------------ceEECCCCEECCCc
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-------------RAIIDKNARIGDNV 481 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-------------~~ii~~~~~Ig~~~ 481 (520)
+..||+++.|+++|.|.... .++.+|+++ .|++++.|+ .++|++++.||+++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~------------~~v~IG~~~---~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~ 85 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDL------------ATVSIGRYC---ILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENC 85 (161)
T ss_pred CEEECCceEEcCCCEEeCCC------------cceEECCCc---EECCCCEEeCCccccCCCccccCeEECCccEECCCC
Confidence 45566666666666665431 122233333 455555543 24566677776666
Q ss_pred EEecCCCcCCcccccCCeEEccC
Q 010006 482 KIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 482 ~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
++.+ ..++...++++++.|+++
T Consensus 86 ~i~~-~~Ig~~v~Ig~~~~Ig~~ 107 (161)
T cd03359 86 VVNA-AQIGSYVHIGKNCVIGRR 107 (161)
T ss_pred EEEe-eEEcCCcEECCCCEEcCC
Confidence 6543 333344444444444443
No 187
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.63 E-value=3.2e-07 Score=77.53 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=39.3
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 475 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 475 (520)
.+++|++++.|++ +.+. .++||+++.|+++|.|.+.+.++. ++ .||. .|.+|+|.+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~---------------~~---~Ig~--~i~~svi~~~~ 69 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGP---------------TC---KIGG--EVEDSIIEGYS 69 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECC---------------CC---EECC--EECccEEcCCC
Confidence 4566777777776 5554 467777777777777665444332 22 4443 34566666666
Q ss_pred EECCCcEEe
Q 010006 476 RIGDNVKIV 484 (520)
Q Consensus 476 ~Ig~~~~i~ 484 (520)
.|+.++.|.
T Consensus 70 ~i~~~~~lg 78 (101)
T cd05635 70 NKQHDGFLG 78 (101)
T ss_pred EecCcCEEe
Confidence 655555554
No 188
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.63 E-value=1.6e-07 Score=92.85 Aligned_cols=13 Identities=8% Similarity=0.255 Sum_probs=5.8
Q ss_pred EEEcCCCEeCCCc
Q 010006 506 VTIIKDALIPSGT 518 (520)
Q Consensus 506 v~Ig~~~~i~~gt 518 (520)
+.||++++|++|+
T Consensus 267 I~IGd~~iIGAGa 279 (341)
T TIGR03536 267 IPLGDRCTVEAGL 279 (341)
T ss_pred eEECCCCEECCCC
Confidence 3344444444444
No 189
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.60 E-value=1.8e-07 Score=92.20 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=8.0
Q ss_pred EEEcCCCEeCCCcc
Q 010006 506 VTIIKDALIPSGTI 519 (520)
Q Consensus 506 v~Ig~~~~i~~gtv 519 (520)
+.||++|+|++|++
T Consensus 242 I~IGd~~VVGAGaV 255 (319)
T TIGR03535 242 ISLGDDCVVEAGLY 255 (319)
T ss_pred eEECCCCEECCCCE
Confidence 44566666666554
No 190
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.56 E-value=2.2e-07 Score=91.82 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=47.8
Q ss_pred ceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCE
Q 010006 399 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNAR 476 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~ 476 (520)
.+.||+|++|+. + +.+||++|.||++|.|...+.+++...+. ..+...||+|+ .||.|+.|. ++.||+||.
T Consensus 147 ~a~IG~g~~I~h~~---givIG~~a~IGdnv~I~~~VtiGg~~~~~-~~~~p~IGd~V---~IGaga~Ilggv~IG~~a~ 219 (273)
T PRK11132 147 AAKIGRGIMLDHAT---GIVIGETAVIENDVSILQSVTLGGTGKTS-GDRHPKIREGV---MIGAGAKILGNIEVGRGAK 219 (273)
T ss_pred cceECCCeEEcCCC---CeEECCCCEECCCCEEcCCcEEecCcccC-CCcCCEECCCc---EEcCCCEEcCCCEECCCCE
Confidence 456666666664 2 45888888888888887777766421110 11334555555 566666554 556666666
Q ss_pred ECCCcEEe
Q 010006 477 IGDNVKIV 484 (520)
Q Consensus 477 Ig~~~~i~ 484 (520)
||+++++.
T Consensus 220 IGAgSvV~ 227 (273)
T PRK11132 220 IGAGSVVL 227 (273)
T ss_pred ECCCCEEC
Confidence 66666554
No 191
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.54 E-value=3.9e-07 Score=83.90 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=21.7
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 438 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~ 438 (520)
+.||++++|+.. .+++||++|.||++|.|..++.++.
T Consensus 68 ~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 68 ARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred CEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence 445555555530 1356677777777777766666654
No 192
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.53 E-value=4e-07 Score=86.63 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=32.5
Q ss_pred ccCCCcCCCceeecccccceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcc
Q 010006 381 YTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 381 ~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~ 432 (520)
...+.+.|+..+.. -.++.||++++|+. |.|. +..||++|.|+++|.|..
T Consensus 59 g~~~~I~~~~~~~~--g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~ 112 (203)
T PRK09527 59 GENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 112 (203)
T ss_pred CCCcEEcCCEEEee--CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence 34455566655431 14577888888886 6664 367888888888887753
No 193
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.52 E-value=3.5e-07 Score=95.56 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=40.0
Q ss_pred CcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEE
Q 010006 405 GCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483 (520)
Q Consensus 405 g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 483 (520)
.+.|++ |.|.+|+||++|+|+ +.|++++++++ +.|+++|.|.+|+|++++.||+++.+
T Consensus 278 p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~~~~~i 336 (369)
T TIGR02092 278 PTYYAENSKVENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIGEGAHL 336 (369)
T ss_pred CcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEECCCCEE
Confidence 333333 444467777777775 34677776665 46777777777777777777777777
Q ss_pred ec
Q 010006 484 VN 485 (520)
Q Consensus 484 ~~ 485 (520)
.+
T Consensus 337 ~~ 338 (369)
T TIGR02092 337 EN 338 (369)
T ss_pred EE
Confidence 64
No 194
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.51 E-value=2.5e-07 Score=96.95 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=73.3
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccccccc
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFL 450 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~ 450 (520)
.++.+.+.+ ..+.+.+++.+. +.+.+++||++|.|+. |.|.+|+|+++|.|+++|.|.++++..+
T Consensus 283 ~~i~~~~~i-~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------ 348 (380)
T PRK05293 283 QYIAENAKV-KNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------ 348 (380)
T ss_pred CEECCCCEE-ecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC------------
Confidence 455566666 345677777764 3467899999999998 9999999999999999999999888765
Q ss_pred ccCCCcceeeCCCCEEcc-----eEECCCCEECCCcEE
Q 010006 451 AAKGSVPIGIGKNSHIKR-----AIIDKNARIGDNVKI 483 (520)
Q Consensus 451 ~~~~~~~~~Ig~~~~i~~-----~ii~~~~~Ig~~~~i 483 (520)
+.|++++.+.+ .+||++++|+++++|
T Consensus 349 -------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 349 -------AVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred -------CEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 47888888876 788888888888766
No 195
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.50 E-value=4.9e-07 Score=76.96 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=24.0
Q ss_pred EECCCcEEee-eEEe---eeEECCCCEECCCCEEccc
Q 010006 401 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~ 433 (520)
.||++|+|++ +.|. ++.||++|.|+++|.|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 4566666665 5454 4888999999999888876
No 196
>PLN02357 serine acetyltransferase
Probab=98.50 E-value=4e-07 Score=92.56 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=53.3
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 478 (520)
+.||.|++|... .+++||+++.||++|.|..++.+++...+.. .+.+.||+|+ .||.++.|. ++.||+++.||
T Consensus 233 a~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~V---~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 233 AKIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDGV---LIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred CEECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCCe---EECCceEEECCeEECCCCEEC
Confidence 445666666531 1467888888888888877777765322211 2457777777 678887774 77788888888
Q ss_pred CCcEEec
Q 010006 479 DNVKIVN 485 (520)
Q Consensus 479 ~~~~i~~ 485 (520)
+++++..
T Consensus 307 AgSVV~~ 313 (360)
T PLN02357 307 AGSVVLK 313 (360)
T ss_pred CCCEECc
Confidence 8887764
No 197
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.49 E-value=4e-07 Score=94.79 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=41.9
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
+.+.++|++ +.|.+|+||++|.|+.+ .|.+++++.+ +.|+++|+|.+|+|++++.||.+
T Consensus 280 ~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~ 339 (361)
T TIGR02091 280 LPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRG 339 (361)
T ss_pred CCCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCC
Confidence 344455555 45556777777777765 6666666554 46777777777777777777777
Q ss_pred cEEe
Q 010006 481 VKIV 484 (520)
Q Consensus 481 ~~i~ 484 (520)
+.+.
T Consensus 340 ~~l~ 343 (361)
T TIGR02091 340 AVIR 343 (361)
T ss_pred CEEe
Confidence 7775
No 198
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.49 E-value=7.1e-07 Score=82.77 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=23.4
Q ss_pred ceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcc
Q 010006 399 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~ 432 (520)
++.||++|+|+. +.|. +..||++|.|+++|.|..
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~ 99 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYT 99 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEe
Confidence 456777777776 5553 467888888888887754
No 199
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.48 E-value=5.3e-07 Score=93.60 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=66.9
Q ss_pred CCCcCCCceeecccc-cceEECCCcEEeeeEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceee
Q 010006 383 QPRYLPPSKMLDADV-TDSVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGI 460 (520)
Q Consensus 383 ~~~~~~~~~i~~~~i-~~~~Ig~g~~I~~~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I 460 (520)
.+.+.+.+.+.++.| .+++||++|.|+++.|. +|+||++|.|+ +|.|++++++++ +.|
T Consensus 254 ~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~-------------------~~i 313 (353)
T TIGR01208 254 RVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR-DAEVEHSIVLDE-------------------SVI 313 (353)
T ss_pred CEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEe-eeEEEeeEEcCC-------------------CEE
Confidence 344555555544444 66899999999986666 89999999998 799999999876 478
Q ss_pred CCC-CEEcceEECCCCEECCCcEEec
Q 010006 461 GKN-SHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 461 g~~-~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
+.+ +++.+++|+++++|+.++.+.+
T Consensus 314 ~~~~~~~~~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 314 EGVQARIVDSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred cCCcceeecCEEcCCCEECCCccccc
Confidence 888 4889999999999999988863
No 200
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.48 E-value=3.8e-07 Score=72.41 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=14.7
Q ss_pred CCeEEccCeEEEcCCCEeCCCccC
Q 010006 497 DGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 497 ~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.++.|..+ +.|+++++|+++++|
T Consensus 55 ~~~~i~~~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 55 ANAVIHGG-VKIGDNAVIGAGAVV 77 (78)
T ss_pred CCCEEeCC-CEECCCCEECcCcEe
Confidence 35555555 677777777777654
No 201
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.48 E-value=8.2e-07 Score=79.02 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=16.7
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~ 431 (520)
.+.||+|++|.. +++|..++.||++|.|+
T Consensus 13 ~a~IG~GtvI~~----gavV~~~a~IG~~~iIn 41 (147)
T cd04649 13 GAYLAEGTTVMH----EGFVNFNAGTLGNCMVE 41 (147)
T ss_pred CCEECCCcEECC----CCEEccCCEECCCeEEC
Confidence 455666666664 44555555555555554
No 202
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.46 E-value=1.6e-07 Score=81.42 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=72.7
Q ss_pred cceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEE
Q 010006 398 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 477 (520)
Q Consensus 398 ~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 477 (520)
..++|.+||+|.+ .+.+..+|..|.++.+|.|++..-.=+ .--+-.+.+||+.+ .|++.|.+..+.|+..+.+
T Consensus 38 GKtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FS---Kg~affp~hiGdhV---FieE~cVVnAAqIgsyVh~ 110 (184)
T KOG3121|consen 38 GKTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFS---KGPAFFPVHIGDHV---FIEEECVVNAAQIGSYVHL 110 (184)
T ss_pred CcEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhc---CCceeeeeeecceE---EEecceEeehhhheeeeEe
Confidence 4588999999987 334788999999999999988753211 01122466777776 7888888888888888888
Q ss_pred CCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 478 GDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 478 g~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
|+|++|++ +|++++- +.|.+++++|+.++
T Consensus 111 GknaviGr------------rCVlkdC-c~ild~tVlPpet~ 139 (184)
T KOG3121|consen 111 GKNAVIGR------------RCVLKDC-CRILDDTVLPPETL 139 (184)
T ss_pred ccceeEcC------------ceEhhhh-eeccCCcccCcccc
Confidence 88888877 4555555 55555555555543
No 203
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.46 E-value=9.1e-07 Score=82.98 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=21.3
Q ss_pred cceEECCCcEEee-eEEee---eEECCCCEECCCCEEc
Q 010006 398 TDSVIGEGCVIKN-CKIHH---SVVGLRSCISEGAIIE 431 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~---s~Ig~~~~Ig~~~~I~ 431 (520)
.++.||++++|+. |.|.+ ..||++|.|+++|.|.
T Consensus 72 ~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~ 109 (183)
T PRK10092 72 YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIY 109 (183)
T ss_pred CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEE
Confidence 3566677776665 54442 2677777777777665
No 204
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.46 E-value=8.6e-07 Score=83.94 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=12.4
Q ss_pred eeEECCCCEECCCCEEc
Q 010006 415 HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~ 431 (520)
...||+++.|++++.|.
T Consensus 65 ~i~IG~~v~Ig~~v~I~ 81 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIA 81 (192)
T ss_pred eEEECCCCEECCCcEEc
Confidence 46777777777777775
No 205
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.46 E-value=6.9e-07 Score=70.87 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=25.2
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEE
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLL 435 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i 435 (520)
.|+++|.|++ +.|. ++.||++|.|+++|.|.++..
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~ 38 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG 38 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccC
Confidence 4666666665 5555 488888888888888876643
No 206
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.44 E-value=5.8e-07 Score=95.79 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=13.6
Q ss_pred eEEeeeEECCCCEECCCCEEcccEEECC
Q 010006 411 CKIHHSVVGLRSCISEGAIIEDTLLMGA 438 (520)
Q Consensus 411 ~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~ 438 (520)
+.|.+|.||++|.| ++|.|++++++++
T Consensus 304 ~~~~~~~ig~~~~i-~~~~i~~svi~~~ 330 (429)
T PRK02862 304 ATITESIIAEGCII-KNCSIHHSVLGIR 330 (429)
T ss_pred cEEEeCEECCCCEE-CCcEEEEEEEeCC
Confidence 34445555555555 4555555544443
No 207
>PLN02739 serine acetyltransferase
Probab=98.43 E-value=6.1e-07 Score=90.57 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=50.2
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 478 (520)
+.||+|++|... .+++||.+|.||++|.|..++.++....+. .++..+||+|+ .||.|+.|- ++.||+|+.||
T Consensus 212 A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~~~-g~r~p~IGd~V---~IGagA~IlG~V~IGd~aiIG 285 (355)
T PLN02739 212 ARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGKET-GDRHPKIGDGA---LLGACVTILGNISIGAGAMVA 285 (355)
T ss_pred ccccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCCcC-CCCCcEECCCC---EEcCCCEEeCCeEECCCCEEC
Confidence 456777777630 156777777777777777666666432111 12456677777 677777764 67777777777
Q ss_pred CCcEEe
Q 010006 479 DNVKIV 484 (520)
Q Consensus 479 ~~~~i~ 484 (520)
.|+++.
T Consensus 286 AGSVV~ 291 (355)
T PLN02739 286 AGSLVL 291 (355)
T ss_pred CCCEEC
Confidence 777775
No 208
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.42 E-value=7.1e-07 Score=95.02 Aligned_cols=54 Identities=15% Similarity=0.344 Sum_probs=47.6
Q ss_pred EEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 412 KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 412 ~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.+.+|+||.+|.| ++|.|++|+++.+ |.||+++.|++|+|+++|+||+++.|.+
T Consensus 324 ~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 324 MAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred eEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 4568999999999 7899998888775 5899999999999999999999999964
No 209
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.42 E-value=9.2e-07 Score=85.46 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=38.4
Q ss_pred ccCCCccccCCCcCCCceeec-ccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc
Q 010006 374 YDRSAPIYTQPRYLPPSKMLD-ADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~~-~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~ 432 (520)
+.|.+.+-..+.+.+++.+-. +.| -++.++++|.|.. +++. +.+||+||.||-++.|..
T Consensus 111 I~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G 173 (271)
T COG2171 111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG 173 (271)
T ss_pred ecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE
Confidence 345555666666666665542 444 3588888888887 6555 467777777777777665
No 210
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.41 E-value=6.7e-07 Score=88.42 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=19.6
Q ss_pred ceEECCCcEEeeeEEeeeEEC--CCCEECCCCEEcccEEEC
Q 010006 399 DSVIGEGCVIKNCKIHHSVVG--LRSCISEGAIIEDTLLMG 437 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig--~~~~Ig~~~~I~~~~i~~ 437 (520)
.+.|++++.||. ++.|+ .++.||++|+|++.+.+.
T Consensus 141 gidI~~~a~IG~----g~~I~h~~givIG~~a~IGdnv~I~ 177 (273)
T PRK11132 141 QVDIHPAAKIGR----GIMLDHATGIVIGETAVIENDVSIL 177 (273)
T ss_pred eeEecCcceECC----CeEEcCCCCeEECCCCEECCCCEEc
Confidence 456666666665 33333 345666666666654443
No 211
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.39 E-value=1.4e-06 Score=86.35 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=8.3
Q ss_pred eeEECCCCEECCCCEE
Q 010006 415 HSVVGLRSCISEGAII 430 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I 430 (520)
+++||.+|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 3455555555555555
No 212
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.39 E-value=9.2e-07 Score=81.76 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=59.6
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEE
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 477 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 477 (520)
.+.||.|.+|... ...+||+-+.||++|.|..++.+|..-=+.. .+.-+||+|+ .||.++.|- +-.||+|+.|
T Consensus 73 ~A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~V---~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 73 GAKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNGV---YIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred CCeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCCe---EECCCCEEEcceEECCCCEE
Confidence 3557777777751 1578888889999998888888887433332 3566788887 688888764 7888888888
Q ss_pred CCCcEEec
Q 010006 478 GDNVKIVN 485 (520)
Q Consensus 478 g~~~~i~~ 485 (520)
|+|+++..
T Consensus 147 GA~sVVlk 154 (194)
T COG1045 147 GAGSVVLK 154 (194)
T ss_pred CCCceEcc
Confidence 88888864
No 213
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.33 E-value=3.4e-06 Score=80.27 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=14.2
Q ss_pred ECCCcEEee-eEEe---eeEECCCCEECCCCEE
Q 010006 402 IGEGCVIKN-CKIH---HSVVGLRSCISEGAII 430 (520)
Q Consensus 402 Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I 430 (520)
+|+++.|.. +.+. +..||+++.|+.+|.|
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I 90 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTI 90 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEE
Confidence 566666665 3321 3444444444444444
No 214
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.33 E-value=6.6e-05 Score=75.55 Aligned_cols=209 Identities=14% Similarity=0.204 Sum_probs=123.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCC-CeEEEEecc-ChhHHHHHHHHhhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQF-NSASLNRHLSRAYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi-~~I~Iv~~~-~~~~i~~~l~~~~~~~ 161 (520)
.++.+|+||||.||||+ ...||.|+||..++++++..++++.. .|. =..+|-+++ .+++..++|++ +++.
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 46889999999999997 57899999996666999999999854 332 234555654 45778889987 3211
Q ss_pred -CC-CCcCCCeEEEeec------cc--CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceecc-ccHHHH
Q 010006 162 -MG-GYKNEGFVEVLAA------QQ--SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDYERF 224 (520)
Q Consensus 162 -~~-~~~~~~~v~vl~~------~~--~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~-~dl~~l 224 (520)
.. ..|..+.+.-+.. .+ .+....| +.|.++-.... ++.+...+.+++.+.+.|.+.. .|. .+
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp-~~ 156 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDL-RI 156 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCH-HH
Confidence 00 0011000000000 00 0011112 34554433322 2333445678999999999755 342 37
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEE
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyi 303 (520)
+..+..+++++++=+.+....+ ..-|.+. .|..-+|+++.|-|....... . ....-.+.+++.++
T Consensus 157 lg~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~~-~------------~~~~~~~~nt~n~~ 222 (300)
T cd00897 157 LNHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDEF-K------------SIKKFKIFNTNNLW 222 (300)
T ss_pred HHHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHhh-c------------CcccceEEEEeEEE
Confidence 7778888999877665543322 2344443 344446888888877543210 0 00112367889999
Q ss_pred EeHHHHHHHHhh
Q 010006 304 ISKDVMLNLLRD 315 (520)
Q Consensus 304 fs~~vl~~ll~~ 315 (520)
|+-+.|+++++.
T Consensus 223 ~~l~~L~~~~~~ 234 (300)
T cd00897 223 VNLKAVKRVVEE 234 (300)
T ss_pred EEHHHHHHHHHh
Confidence 999999877653
No 215
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=2e-06 Score=87.82 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=34.7
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEE
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLL 435 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i 435 (520)
+++-+..++.+.+ .|.+|+|+.|+.|+. |.|.+|+|..+|.||++|+|+++++
T Consensus 295 ~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aII 348 (393)
T COG0448 295 SNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAII 348 (393)
T ss_pred eeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEe
Confidence 3444555555555 566777777777776 7777777777777777777766655
No 216
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.33 E-value=1.8e-06 Score=92.25 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=68.1
Q ss_pred CCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCC
Q 010006 384 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGK 462 (520)
Q Consensus 384 ~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 462 (520)
+.+.+++.+.++.|.+++|+++|.|++ |.|.+|+|........+.. .+.+...+ ...+.||+++ .|+
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~--~~~~~~~~------~~~~~Ig~~~---~i~- 383 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEE--IASLLAEG------KVPIGIGENT---KIR- 383 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccc--cccccccC------CcceEECCCC---EEc-
Confidence 345555555444455566666666665 5555444422111111111 11221110 0123678887 454
Q ss_pred CCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCC-eEEccCeEEEcCCCEe
Q 010006 463 NSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDG-YFIKSGIVTIIKDALI 514 (520)
Q Consensus 463 ~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~-~~I~~~~v~Ig~~~~i 514 (520)
+++|. ++.||+++.|+...-+.....++++.++++| +.|+.+ +.|..+++|
T Consensus 384 ~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~ 436 (436)
T PLN02241 384 NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKN-AVIPDGTVI 436 (436)
T ss_pred ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCC-cEeCCCCCC
Confidence 67775 7888888888877777777777777778888 688888 777777764
No 217
>PRK10502 putative acyl transferase; Provisional
Probab=98.30 E-value=2.4e-06 Score=80.27 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=24.4
Q ss_pred eEECCCcEEee-eEEe---eeEECCCCEECCCCEEcc
Q 010006 400 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~ 432 (520)
+.||++|.|.+ +.|. +..||++|.|+++|.|.+
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc
Confidence 55677777766 5554 478889999988888874
No 218
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.29 E-value=8.7e-05 Score=71.28 Aligned_cols=177 Identities=23% Similarity=0.306 Sum_probs=103.5
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
.|||+|-|.++||. -|.|.+++|+ |||+|+++.+.+++ +++|+|.| +.+++.+.+.+ +. .
T Consensus 1 iaiIpAR~gS~rlp------~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~-~g---------~ 61 (217)
T PF02348_consen 1 IAIIPARGGSKRLP------GKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEE-YG---------A 61 (217)
T ss_dssp EEEEEE-SSSSSST------TGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHH-TT---------S
T ss_pred CEEEecCCCCCCCC------cchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHH-cC---------C
Confidence 38999999999998 4999999997 99999999999975 79998888 56677776665 21 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCc-EEEEEEecCc--
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDAD-ITVAALPMDE-- 244 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~-~tl~~~~~~~-- 244 (520)
.+...... . ..++......+.....+ ..+.++.+.||. |.+. .+.++++.+.+...+ +.-...+...
T Consensus 62 ~v~~~~~~---~----~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 133 (217)
T PF02348_consen 62 KVIFRRGS---L----ADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPVGSSV 133 (217)
T ss_dssp EEEE--TT---S----SSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEECSHH
T ss_pred eeEEcChh---h----cCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccccchh
Confidence 12222111 1 13343333333333332 334788899999 5554 488999999888765 3222333221
Q ss_pred --ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHH
Q 010006 245 --KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD 307 (520)
Q Consensus 245 --~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~ 307 (520)
.+.... ....+.++....+.+.+.....+... .....++...++|.++..
T Consensus 134 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 134 EIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRNPE------------EFKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp HHTSTTST-EEEECTTSBEEEEESSESSECHHHHC------------SSSSTEEEEEEEEEEEHH
T ss_pred hcccccce-EEEeccccchhhcccCCCcccccccc------------cccccccccccccccccc
Confidence 112222 22334445555555544432211100 000124678999999997
No 219
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.29 E-value=3e-06 Score=89.70 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=39.8
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECC
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA 438 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~ 438 (520)
..+.+.+++.+.++.|.+++|+++|.|+. |.|.+|+|+++|.|+++|.|.+++++.+
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 34556666666556666777777777776 7777777777777777777777666543
No 220
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.28 E-value=6e-06 Score=69.62 Aligned_cols=60 Identities=25% Similarity=0.406 Sum_probs=34.4
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCE---EcceEECCCCE
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH---IKRAIIDKNAR 476 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~---i~~~ii~~~~~ 476 (520)
+.|+++++|+.. ..++||+++.||++|.|.+.+. |++++. +..++|++++.
T Consensus 9 ~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~~~------------------------i~~~~~~~~~~~~~Ig~~~~ 62 (101)
T cd03354 9 AKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQGVT------------------------LGGKGKGGGKRHPTIGDNVV 62 (101)
T ss_pred CEECCCEEECCC--CeEEECCCCEECCCCEEcCCCE------------------------ECCCccCCcCCCCEECCCcE
Confidence 444444444420 1456777777777777654443 333332 45667777777
Q ss_pred ECCCcEEec
Q 010006 477 IGDNVKIVN 485 (520)
Q Consensus 477 Ig~~~~i~~ 485 (520)
|+.++.+.+
T Consensus 63 Ig~~~~i~~ 71 (101)
T cd03354 63 IGAGAKILG 71 (101)
T ss_pred EcCCCEEEC
Confidence 777776654
No 221
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.27 E-value=2.6e-06 Score=78.37 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=23.6
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.++|+++|.||.+++|.+. .++|+++.|+++ ++|-++ ||++++
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~------v~IG~~~~Iga~-s~V~~d--vp~~~~ 155 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGN------IEVGENAKIGAN-SVVLKD--VPPGAT 155 (162)
T ss_pred CCEECCCcEEcCCCEEECC------cEECCCCEECCC-CEECCC--CCCCCE
Confidence 4577777777777777643 344445555555 333332 344443
No 222
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.8e-06 Score=88.25 Aligned_cols=79 Identities=30% Similarity=0.375 Sum_probs=59.9
Q ss_pred ccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcc
Q 010006 379 PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 457 (520)
Q Consensus 379 ~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
.+...+.+.+++.+. .+++||++|.|++ +.|.+|+|.++|.|++++.|.++++..+
T Consensus 263 ~ig~~~~i~~~~~i~----~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~------------------- 319 (358)
T COG1208 263 VIGPGAKIGPGALIG----PYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN------------------- 319 (358)
T ss_pred EECCCCEECCCCEEC----CCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC-------------------
Confidence 344444444444443 5699999999999 9999999999999999999999999886
Q ss_pred eeeCCCCEEcceEECCCCEECCCcEEecC
Q 010006 458 IGIGKNSHIKRAIIDKNARIGDNVKIVNS 486 (520)
Q Consensus 458 ~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 486 (520)
+.||+ +. .+++ +.+|.++.+..+
T Consensus 320 ~~ig~-~~----~i~d-~~~g~~~~i~~g 342 (358)
T COG1208 320 CKIGA-SL----IIGD-VVIGINSEILPG 342 (358)
T ss_pred cEECC-ce----eecc-eEecCceEEcCc
Confidence 47777 22 1777 777777777653
No 223
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.23 E-value=4.1e-06 Score=70.63 Aligned_cols=29 Identities=28% Similarity=0.254 Sum_probs=12.8
Q ss_pred EECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 476 RIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 476 ~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.||+++.|.....+....++++++.|+++
T Consensus 56 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~ 84 (101)
T cd03354 56 TIGDNVVIGAGAKILGNITIGDNVKIGAN 84 (101)
T ss_pred EECCCcEEcCCCEEECcCEECCCCEECCC
Confidence 45555555544444333334444444433
No 224
>PLN02694 serine O-acetyltransferase
Probab=98.23 E-value=2.8e-06 Score=84.16 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=46.2
Q ss_pred cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCE
Q 010006 398 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 476 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 476 (520)
..+.|++++.||. +.|.+ +.++.||++|.|++.+.+.. ++++|.. +..+..++++|+++|.
T Consensus 159 ~gvdI~p~A~IG~gv~Idh---~tGVVIGe~a~IGdnv~I~~---------~VtLGg~------g~~~~~r~piIGd~V~ 220 (294)
T PLN02694 159 FAVDIHPAAKIGKGILFDH---ATGVVIGETAVIGNNVSILH---------HVTLGGT------GKACGDRHPKIGDGVL 220 (294)
T ss_pred eeEEeCCcceecCCEEEeC---CCCeEECCCcEECCCCEEee---------cceeCCc------ccccCCCccEECCCeE
Confidence 3467889998886 44433 24788888888888776553 2222211 2233445677777888
Q ss_pred ECCCcEEecCCCc
Q 010006 477 IGDNVKIVNSDSV 489 (520)
Q Consensus 477 Ig~~~~i~~~~~v 489 (520)
||.|++|.+...+
T Consensus 221 IGagA~Ilggi~I 233 (294)
T PLN02694 221 IGAGATILGNVKI 233 (294)
T ss_pred ECCeeEECCCCEE
Confidence 8877777653333
No 225
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.22 E-value=1.1e-05 Score=74.86 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=5.4
Q ss_pred EECCCCEECCCcEE
Q 010006 470 IIDKNARIGDNVKI 483 (520)
Q Consensus 470 ii~~~~~Ig~~~~i 483 (520)
.||++|.||.+++|
T Consensus 120 ~IG~~~~Ig~~a~I 133 (169)
T cd03357 120 TIGDNVWIGGGVII 133 (169)
T ss_pred EeCCCEEECCCCEE
Confidence 33333333333333
No 226
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.19 E-value=5.3e-06 Score=70.81 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=22.3
Q ss_pred eEECCCcEEee-eEEe---eeEECCCCEECCCCEEcc
Q 010006 400 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~ 432 (520)
..||++|.|++ +.|. ...||++|.|+++|.|..
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeec
Confidence 35666666665 5554 478888888888887753
No 227
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.18 E-value=1.3e-05 Score=79.30 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=6.5
Q ss_pred ECCCCEECCCCEEccc
Q 010006 418 VGLRSCISEGAIIEDT 433 (520)
Q Consensus 418 Ig~~~~Ig~~~~I~~~ 433 (520)
|+.+|.||++|.|..+
T Consensus 196 I~HdvvIGd~~~IgpG 211 (319)
T TIGR03535 196 ISAGVVVGDGSDIGGG 211 (319)
T ss_pred EccCCEECCCCEECCC
Confidence 3344444444444333
No 228
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.18 E-value=8.6e-06 Score=77.13 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=26.9
Q ss_pred ceEECCCcEEee-eEEe---eeEECCCCEECCCCEEccc
Q 010006 399 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~ 433 (520)
...||++|.|++ +.|. ++.||++|.|++++.|.+.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 467888888877 6665 5788888888888888763
No 229
>PRK10191 putative acyl transferase; Provisional
Probab=98.18 E-value=5e-06 Score=74.95 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=47.0
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEE
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 477 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 477 (520)
++.||+++.|++. .+++|+.++.||++|.|++.+.+++.- ......+.+|+++ .||.++.+. ++.|++++.|
T Consensus 47 ~a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~--~~~~~~~~IGd~~---~Ig~~~~I~~~v~IG~~~~I 119 (146)
T PRK10191 47 AATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRG--ADNMACPHIGNGV---ELGANVIILGDITIGNNVTV 119 (146)
T ss_pred CCEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCC--cCCCCCCEECCCc---EEcCCCEEeCCCEECCCCEE
Confidence 3667787777751 269999999999999999988887521 0011223444444 444444443 3444444444
Q ss_pred CCCcEEe
Q 010006 478 GDNVKIV 484 (520)
Q Consensus 478 g~~~~i~ 484 (520)
|+++++.
T Consensus 120 gags~V~ 126 (146)
T PRK10191 120 GAGSVVL 126 (146)
T ss_pred CCCCEEC
Confidence 4444443
No 230
>PRK10191 putative acyl transferase; Provisional
Probab=98.17 E-value=1.5e-05 Score=71.79 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=7.0
Q ss_pred EECCCCEECCCcEEe
Q 010006 470 IIDKNARIGDNVKIV 484 (520)
Q Consensus 470 ii~~~~~Ig~~~~i~ 484 (520)
.||+++.||.++.+.
T Consensus 94 ~IGd~~~Ig~~~~I~ 108 (146)
T PRK10191 94 HIGNGVELGANVIIL 108 (146)
T ss_pred EECCCcEEcCCCEEe
Confidence 444444444444444
No 231
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.11 E-value=1.7e-05 Score=74.44 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=20.5
Q ss_pred EECCCcEEee-eEEe-eeEECCCC--EECCCCEEcccEEE
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRS--CISEGAIIEDTLLM 436 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~--~Ig~~~~I~~~~i~ 436 (520)
.+|.++.|++ +.|. +++|++.+ +||++|.|...+.+
T Consensus 69 ~~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i 108 (183)
T PRK10092 69 DYGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHI 108 (183)
T ss_pred eecCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEE
Confidence 4667777776 5555 45555554 56666666544433
No 232
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.05 E-value=5.1e-05 Score=86.66 Aligned_cols=199 Identities=20% Similarity=0.221 Sum_probs=130.4
Q ss_pred eEEEEeCceecccc--HHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeCCC--CCEEEeeeCCChhhhhhccccccc
Q 010006 207 EFLVLAGDHLYRMD--YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE--GRIIEFSEKPKGEQLKAMKVDTTI 282 (520)
Q Consensus 207 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~--g~V~~~~ekp~~~~~~~~~~~~~~ 282 (520)
.+||..||.+..++ +.+ -.+++++......+.+-.+..|+...|++ +++..+..||..+...++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 68999999866554 222 23466666666665556788999999887 6888999999987654332
Q ss_pred ccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC----C--CCCccccchHhhhh---------CCceEEEEEec-ce
Q 010006 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP----G--ANDFGSEVIPGATS---------IGMRVQAYLYD-GY 346 (520)
Q Consensus 283 ~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~----~--~~~~~~dil~~li~---------~~~~v~a~~~~-g~ 346 (520)
..+..+.++|+|+|+.+.+..+++.... . ..|+.+|++..|-. .+.++...++. +.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 2334688999999999888766654221 1 22444566554321 14567777776 57
Q ss_pred EEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCcEEee--eEEeeeEECCCCEE
Q 010006 347 WEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN--CKIHHSVVGLRSCI 424 (520)
Q Consensus 347 w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~--~~i~~s~Ig~~~~I 424 (520)
++-+||-.+|+.....+.... .-+..+.....-..|+. .+.|++|+.++.+++ +.|++|.||.+.+|
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~-------~~~~~i~~~~~~~~~~~----~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLV-------TDQRRIMHRKVKPHPAM----FVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred eEEecCcHHHhcCchhHHHHh-------hhhhhhhccccCCCCce----EEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 999999999986544332221 00111111111111221 236889999999997 55889999999999
Q ss_pred CCCCEEcccEE
Q 010006 425 SEGAIIEDTLL 435 (520)
Q Consensus 425 g~~~~I~~~~i 435 (520)
|.+|+|.+.-.
T Consensus 364 g~~~Iisgv~~ 374 (974)
T PRK13412 364 ASRSIITGVPE 374 (974)
T ss_pred cCCcEEecccc
Confidence 99999987743
No 233
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=8.2e-05 Score=70.09 Aligned_cols=118 Identities=23% Similarity=0.336 Sum_probs=84.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccC--hhHHHHHHHHhhhccCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFN--SASLNRHLSRAYASNMG 163 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~--~~~i~~~l~~~~~~~~~ 163 (520)
|+++.+||-|-=.+|||. -|.|+|++|+ |||+++|+++..+- +++++|.|.-. .+.+..++.+ +
T Consensus 1 ~~~I~~IiQARmgStRLp------gKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~-~----- 67 (241)
T COG1861 1 MSMILVIIQARMGSTRLP------GKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS-H----- 67 (241)
T ss_pred CCcEEEEeeecccCccCC------cchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH-c-----
Confidence 345666666666777886 4999999987 99999999999875 68999998743 3446666555 1
Q ss_pred CCcCCCeEEEeecccCCCCCCCccCcH-HHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcE
Q 010006 164 GYKNEGFVEVLAAQQSPENPNWFQGTA-DAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 164 ~~~~~~~v~vl~~~~~~~~~~~~~Gt~-~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+ +.++ .|.. +.|......++....+.++=+.||. +.+.+ +...++.|.++++|.
T Consensus 68 -----G-~~vf------------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 68 -----G-FYVF------------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred -----C-eeEe------------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 1 2232 4554 4455555556655567888899999 77777 677899999888764
No 234
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.02 E-value=7.2e-06 Score=71.90 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=40.5
Q ss_pred CCCcCCCceee-cccc-cceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcc----cEEECC
Q 010006 383 QPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIED----TLLMGA 438 (520)
Q Consensus 383 ~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~----~~i~~~ 438 (520)
+..+.|.+.+- .+.| .+++|++||+|.+ +.+- --+||+|+.|.+.+.|.+ +.+|+.
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~ 74 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDS 74 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCC
Confidence 35667777663 5566 6799999999998 5443 268999999999887744 555554
No 235
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.02 E-value=3.5e-05 Score=81.48 Aligned_cols=94 Identities=26% Similarity=0.402 Sum_probs=64.5
Q ss_pred eEEEEeCceec-cccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeCCCC---------CEEEeeeCCChhhhhhc
Q 010006 207 EFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---------RIIEFSEKPKGEQLKAM 276 (520)
Q Consensus 207 ~~Lvl~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g---------~V~~~~ekp~~~~~~~~ 276 (520)
-++|..+|+++ ..+ ...+. + .+++++++..+.+.+-++..|+..+|+++ .+.+|..||......+-
T Consensus 55 Gv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHhC
Confidence 58999999543 333 11222 1 23678888888877778899999999988 89999999998765211
Q ss_pred ccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 277 KVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
......+....++|++.|+.+..+.++.
T Consensus 131 ----------~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 131 ----------GAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred ----------CcccCCCcccccccceeccHHHHHHHHH
Confidence 1111233456689999999887776654
No 236
>PLN02357 serine acetyltransferase
Probab=98.02 E-value=2.5e-05 Score=79.61 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=15.1
Q ss_pred eeCCCCEEcceEECCCCEECCCcEEec
Q 010006 459 GIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 459 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.||.++.|.+.+-...+.+|.-+++.+
T Consensus 304 ~IGAgSVV~~dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 304 KIGAGSVVLKDVPPRTTAVGNPARLIG 330 (360)
T ss_pred EECCCCEECcccCCCcEEECCCeEEEc
Confidence 566666665555555555555555544
No 237
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.01 E-value=0.00045 Score=72.96 Aligned_cols=211 Identities=19% Similarity=0.266 Sum_probs=120.1
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCC-CeEEEEec-cChhHHHHHHHHhhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQ-FNSASLNRHLSRAYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi-~~I~Iv~~-~~~~~i~~~l~~~~~~~ 161 (520)
.++.+|+||||.||||+ ..-||.|+||..+..+++..++++.. .|. -..+|-++ ...++..+++.+.....
T Consensus 55 ~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~ 131 (420)
T PF01704_consen 55 GKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLD 131 (420)
T ss_dssp TCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSS
T ss_pred CCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCC
Confidence 57899999999999998 57899999997666899988888764 332 23466666 45678899999822221
Q ss_pred CCC-CcCCCeEEEeecccC-C----C-----CCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceeccccHHHH
Q 010006 162 MGG-YKNEGFVEVLAAQQS-P----E-----NPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMDYERF 224 (520)
Q Consensus 162 ~~~-~~~~~~v~vl~~~~~-~----~-----~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~~dl~~l 224 (520)
... .|.+..+..+..... + . ...| +.|.++-.... ++.+...+.+.+.+.+.|.|...-=-.+
T Consensus 132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~ 211 (420)
T PF01704_consen 132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVF 211 (420)
T ss_dssp CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHH
T ss_pred cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHH
Confidence 110 011111111111110 0 0 0123 34665433322 2334445678999999999665322347
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEE
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyi 303 (520)
+..+.++++++.+-+.+....+. .-|+++ .|..-+|+++.+-|...... .. ......+.++|--+
T Consensus 212 lG~~~~~~~~~~~evv~Kt~~de-k~Gvl~~~~G~~~vvEysqip~~~~~~-~~------------~~~~~~~FntnNi~ 277 (420)
T PF01704_consen 212 LGYMIEKNADFGMEVVPKTSPDE-KGGVLCRYDGKLQVVEYSQIPKEHMAE-FK------------DIKGFLLFNTNNIW 277 (420)
T ss_dssp HHHHHHTT-SEEEEEEE-CSTTT-SSEEEEEETTEEEEEEGGGS-HHGHHH-HT------------STTTSBEEEEEEEE
T ss_pred HHHHHhccchhheeeeecCCCCC-ceeEEEEeCCccEEEEeccCCHHHHHh-hh------------ccccceEEEeceee
Confidence 77778888998777776543222 344444 44334677777766653211 00 00112355778779
Q ss_pred EeHHHHHHHHhh
Q 010006 304 ISKDVMLNLLRD 315 (520)
Q Consensus 304 fs~~vl~~ll~~ 315 (520)
|+-+.++++++.
T Consensus 278 ~~l~~l~~~~~~ 289 (420)
T PF01704_consen 278 FSLDFLKRLLER 289 (420)
T ss_dssp EEHHHHHHHHHT
T ss_pred EEHHHHHHHHHh
Confidence 999999988764
No 238
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.99 E-value=3.3e-05 Score=69.66 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.6
Q ss_pred eeEECCCCEECCCCEEccc
Q 010006 415 HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~ 433 (520)
...||++|.|+++|.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5788888888888888665
No 239
>PLN02739 serine acetyltransferase
Probab=97.99 E-value=3e-05 Score=78.56 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=15.4
Q ss_pred eEECCCcEEeeeEEeeeEE--CCCCEECCCCEEcccEEE
Q 010006 400 SVIGEGCVIKNCKIHHSVV--GLRSCISEGAIIEDTLLM 436 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~I--g~~~~Ig~~~~I~~~~i~ 436 (520)
+-|++++.|+. +..| |.++.||++|+|++.+.+
T Consensus 206 idI~p~A~IG~----Gv~IdHg~GVVIG~~avIGdnv~I 240 (355)
T PLN02739 206 IDIHPAARIGK----GILLDHGTGVVIGETAVIGDRVSI 240 (355)
T ss_pred cccCCCccccC----ceEEecCCceEECCCCEECCCCEE
Confidence 34555555553 2233 235555555555544443
No 240
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.95 E-value=2.6e-05 Score=66.26 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=7.2
Q ss_pred eeEECCCCEECCC
Q 010006 415 HSVVGLRSCISEG 427 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~ 427 (520)
++.||++|.|...
T Consensus 27 ~~~Ig~~~~i~~~ 39 (109)
T cd04647 27 NVLIGPNVTIYDH 39 (109)
T ss_pred CCEECCCCEEECC
Confidence 4555555555544
No 241
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.88 E-value=0.00059 Score=69.06 Aligned_cols=214 Identities=15% Similarity=0.159 Sum_probs=121.1
Q ss_pred EEEEEeCCCCCCCCccccCCCccceec---CCccchhHHHHHHhHhCC--------C-CeEEEEec-cChhHHHHHHHHh
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLNSN--------I-SKIYVLTQ-FNSASLNRHLSRA 157 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv---~G~~plI~~~l~~l~~~g--------i-~~I~Iv~~-~~~~~i~~~l~~~ 157 (520)
.+|+||||.||||+ ..-||.++|| .|+ ++++..++++.... . =.++|.++ ...++..++|++.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 57999999999998 5789999999 354 99999999986521 1 23467776 4567788999873
Q ss_pred hhccCCC----CcCCCeEEEeecc--cC---CCC---CCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCce-ecc
Q 010006 158 YASNMGG----YKNEGFVEVLAAQ--QS---PEN---PNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH-LYR 218 (520)
Q Consensus 158 ~~~~~~~----~~~~~~v~vl~~~--~~---~~~---~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~-l~~ 218 (520)
..+++.. .|.+..+..+... .- .++ -.| +.|.++-.... ++.+...+.+++.+..-|. |..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 3333221 1111222222100 00 011 112 35665443322 2333444667888888888 444
Q ss_pred ccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEe--CCCC--CE--EEeeeCCChhhhhhcccccccccCCchhhcc
Q 010006 219 MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEG--RI--IEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (520)
Q Consensus 219 ~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~--d~~g--~V--~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
.-.-.++-.+..++.++...+.+. .+...-|+++. ..+| .| +++.|-+..-..... +. +--......
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~--~~---g~~~~~~~~ 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGK--DD---GDVDDKTGF 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCC--CC---CCccccccc
Confidence 444456666677788877666553 33456776653 1233 34 777765543211100 00 000000012
Q ss_pred CCceeeeeEEEEeHHHHHHHHhh
Q 010006 293 MPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 293 ~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
..+..+++.++|+-+.+.+.++.
T Consensus 231 s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ccCCCeeeeEEEeHHHHHHHHhh
Confidence 23567899999999888877764
No 242
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.86 E-value=7.3e-05 Score=69.31 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=4.6
Q ss_pred ECCCCEECCCCE
Q 010006 418 VGLRSCISEGAI 429 (520)
Q Consensus 418 Ig~~~~Ig~~~~ 429 (520)
||+++.||.++.
T Consensus 122 Ig~~V~IGagAk 133 (194)
T COG1045 122 IGNGVYIGAGAK 133 (194)
T ss_pred cCCCeEECCCCE
Confidence 333333333333
No 243
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.76 E-value=5.2e-05 Score=71.33 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=23.1
Q ss_pred cceEECCCcEEee-eEEe---eeEECCCCEECCCCEEccc
Q 010006 398 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~ 433 (520)
.+..+|..|.++. +.+. +..||.++.|+.+|.|...
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~ 105 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN 105 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC
Confidence 3467777787776 5432 3457777777777776654
No 244
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.71 E-value=5.4e-05 Score=71.05 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=26.0
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 438 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~ 438 (520)
+.||+|-.+..+ ...+||+-..||++|.|.+.+-+++
T Consensus 155 a~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlgg 191 (269)
T KOG4750|consen 155 AKIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGG 191 (269)
T ss_pred hhcccceeeccc--cceeecceeEeccceeeecceeecc
Confidence 456677666652 2567788788888888877777775
No 245
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=8.2e-05 Score=72.73 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=48.5
Q ss_pred cccCCCccccCCCcCCCceee-------cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccc
Q 010006 373 FYDRSAPIYTQPRYLPPSKML-------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETD 444 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~-------~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~ 444 (520)
+++|++++.++++++|++.|. +.++.+++|-++|.|.+ +.+.||+||-.|.||.+++++..-+..+-
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~----- 364 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP----- 364 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCC-----
Confidence 455555555555555554443 33445555556666655 55556666666666666655544333220
Q ss_pred ccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 445 ADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 445 ~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
....+.-++.|..+++++-|.+.|
T Consensus 365 -----------------~~~~~a~Tilga~v~v~dev~v~~ 388 (407)
T KOG1460|consen 365 -----------------NLPFAALTILGADVSVEDEVIVLN 388 (407)
T ss_pred -----------------CCCcceeEEecccceecceeEEee
Confidence 000112366677777777777765
No 246
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.65 E-value=0.0029 Score=67.72 Aligned_cols=209 Identities=13% Similarity=0.189 Sum_probs=120.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecC--CccchhHHHHHHhHhC--------------CC-CeEEEEec-cChhH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNS--------------NI-SKIYVLTQ-FNSAS 149 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~--G~~plI~~~l~~l~~~--------------gi-~~I~Iv~~-~~~~~ 149 (520)
.++.+|+||||.||||+ ...||.|++|+ .++++++...+++... ++ =..+|.++ ...+.
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 46889999999999998 57899999773 2348999999886431 11 13466676 45677
Q ss_pred HHHHHHHhhhccCCCCcCCCeEEEeeccc-------------CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEE
Q 010006 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQ-------------SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLV 210 (520)
Q Consensus 150 i~~~l~~~~~~~~~~~~~~~~v~vl~~~~-------------~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lv 210 (520)
..++|.+...+++.. .. |.++.... ++..-.| +.|.++-.... ++.+...+.+++.+
T Consensus 192 T~~ff~~~~~FGl~~---~~-V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 267 (493)
T PLN02435 192 TRKFFESHKYFGLEA---DQ-VTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDC 267 (493)
T ss_pred HHHHHHhCCCCCCCc---cc-eEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 899998743333211 11 22211100 0011112 35665543322 23333446788999
Q ss_pred EeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEe-CCCC--CEEEeeeCCChhhhhhcccccccccCC
Q 010006 211 LAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-DEEG--RIIEFSEKPKGEQLKAMKVDTTILGLD 286 (520)
Q Consensus 211 l~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~-d~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~ 286 (520)
...|.+ ...---.++-.+...+.++..-+.+... ....-|.++. +.+| .|+++.|-+....... +
T Consensus 268 ~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~-~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~----------~ 336 (493)
T PLN02435 268 YGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAY-PQEKVGVFVRRGKGGPLTVVEYSELDQAMASAI----------N 336 (493)
T ss_pred EecccccccccCHHHHHHHHhcCCceEEEeeecCC-CCCceeEEEEecCCCCEEEEEeccCCHHHHhcc----------C
Confidence 999994 4433334677777888887766554322 1234466654 2344 4777777654332110 0
Q ss_pred chhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 287 DERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 287 ~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
+......-...+++.++|+.++|.++..
T Consensus 337 ~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 337 QQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ccccccccchhhHHHhhccHHHHHHHHH
Confidence 0001112245678889999999987643
No 247
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.61 E-value=0.00049 Score=64.16 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCccceecCC--ccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCcc
Q 010006 110 RAKPAVPLGA--NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQ 187 (520)
Q Consensus 110 ~pK~Llpv~G--~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~ 187 (520)
.+|+|+++.| + |||+|+++.+.. .+++|+|+++.+. .. .. .+ +.++.... . ..
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~~-~~~~iivv~~~~~-~~----~~---------~~---~~~i~d~~--~----g~ 57 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVGQ-RCAPVFVMAAPGQ-PL----PE---------LP---APVLRDEL--R----GL 57 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHhh-cCCEEEEECCCCc-cc----cc---------CC---CCEeccCC--C----CC
Confidence 5899999997 7 999999998764 5899999997542 11 00 01 22332111 1 26
Q ss_pred CcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHh
Q 010006 188 GTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRE 230 (520)
Q Consensus 188 Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~ 230 (520)
|...++..++..+.....+.+++++||+ +++.+ +..+++.+..
T Consensus 58 gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 58 GPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 7777777666543222357999999999 66655 7777776543
No 248
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.60 E-value=6.4e-05 Score=74.66 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=42.4
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCccc
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 494 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~ 494 (520)
+|.||+|+.||.+|+|++++.+.+ +++-.+. .++.++.|..++++.+++||.+++|.+.+.+++++.
T Consensus 276 ~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~~---~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~ 342 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDGVRLQD----------STILGAD---YYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVI 342 (371)
T ss_pred ccEECCCceECCCcEecCceEEEe----------eEEEccc---eechhHHHHhhhccccccccCceEEecccEeccceE
Confidence 677777777777777777776653 2222222 466666777777777777777777766444444333
No 249
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0039 Score=65.47 Aligned_cols=208 Identities=18% Similarity=0.275 Sum_probs=118.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCC-CeEEEEeccChhHHHHHHHH-hhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQFNSASLNRHLSR-AYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi-~~I~Iv~~~~~~~i~~~l~~-~~~~~ 161 (520)
.++.+|+||||+||||+ ..-||.+++|..++++++.+.+.+.. .++ -..+|-+..+.++-..++.. .|. +
T Consensus 104 ~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~-~ 179 (472)
T COG4284 104 GKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF-G 179 (472)
T ss_pred CceEEEEecCCcccccc---cCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc-C
Confidence 57899999999999999 46899999998334999999888754 343 23466677777555554443 331 1
Q ss_pred CCC----CcCCCeEE-EeecccC----CCC--CCC-ccCcHH---HHHH--HHHHhhhcCcceEEEEeCceecc-ccHHH
Q 010006 162 MGG----YKNEGFVE-VLAAQQS----PEN--PNW-FQGTAD---AVRQ--YLWLFEEHNVLEFLVLAGDHLYR-MDYER 223 (520)
Q Consensus 162 ~~~----~~~~~~v~-vl~~~~~----~~~--~~~-~~Gt~~---al~~--~~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (520)
+.. .|.+.... ++..... ..+ ..| +.|.++ +|.. .++.+...+.+.+.|.+.|.+.. .|+.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~- 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK- 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-
Confidence 100 11111111 2111110 011 134 345543 4443 22333345678899999999543 4543
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceee-eeE
Q 010006 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS-MGI 301 (520)
Q Consensus 224 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~GI 301 (520)
++..+...+.+.++=++.... ....-|++. .|+.-+|+++.+-|......... .........+ .++
T Consensus 259 ~lg~~~~~~~e~~~e~t~Kt~-a~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s-----------~~~~~~~n~Nni~l 326 (472)
T COG4284 259 FLGFMAETNYEYLMETTDKTK-ADEKVGILVTYDGKLRLLEYSEVPNEHREEFTS-----------DGKLKYFNTNNIWL 326 (472)
T ss_pred HHHHHHhcCcceeEEEeeccc-ccccceEEEEeCCceEEEEEecCChhHhhhhcc-----------ccceeeecccccee
Confidence 667777778887665554332 223455554 77778999999888753211000 0000112334 678
Q ss_pred EEEeHHHHHHH
Q 010006 302 YVISKDVMLNL 312 (520)
Q Consensus 302 yifs~~vl~~l 312 (520)
|+++.+.+.+.
T Consensus 327 ~~~~~~~l~~~ 337 (472)
T COG4284 327 HLFSVKFLKEA 337 (472)
T ss_pred ehhHHHHHHhh
Confidence 88888777644
No 250
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00019 Score=67.55 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=45.3
Q ss_pred EECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecC--------CCcCCccc
Q 010006 423 CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS--------DSVQEAAR 494 (520)
Q Consensus 423 ~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~--------~~v~~~~~ 494 (520)
-|.+.+.|+++++++. +..++||+ -++||+|+.|.-++.++.. ..+++++.
T Consensus 150 dihpaa~ig~gilldh----------------atgvvige-----TAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vl 208 (269)
T KOG4750|consen 150 DIHPAAKIGKGILLDH----------------ATGVVIGE-----TAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVL 208 (269)
T ss_pred cccchhhcccceeecc----------------ccceeecc-----eeEeccceeeecceeeccccccccccCCcccCCeE
Confidence 4566677777788775 11235663 4555566666666666432 13334444
Q ss_pred ccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 495 ETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 495 ~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+|.|+.|-.+ |+||+|++|++|++|
T Consensus 209 iGaGvtILgn-V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 209 IGAGVTILGN-VTIGEGAVIAAGSVV 233 (269)
T ss_pred EccccEEeCC-eeECCCcEEeccceE
Confidence 4444444455 778888888888875
No 251
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.53 E-value=0.00018 Score=81.09 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=21.0
Q ss_pred ceEECCCcEEeeeEEeeeEECCC-CEECCCCEEcccEEEC
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLR-SCISEGAIIEDTLLMG 437 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~-~~Ig~~~~I~~~~i~~ 437 (520)
++.||++|.|+. ...+..+ +.||++|.|.+.+.+.
T Consensus 597 Ga~IG~~v~i~~----~~~~~~dlv~IGd~~~I~~~~~i~ 632 (695)
T TIGR02353 597 GVKIGRGVYIDG----TDLTERDLVTIGDDSTLNEGSVIQ 632 (695)
T ss_pred CCEECCCeEECC----eeccCCCCeEECCCCEECCCCEEE
Confidence 455566665554 2233333 5888888887776654
No 252
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.37 E-value=0.00058 Score=76.99 Aligned_cols=94 Identities=17% Similarity=0.286 Sum_probs=51.3
Q ss_pred cceEECCCcEEeeeEE---eeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECC
Q 010006 398 TDSVIGEGCVIKNCKI---HHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDK 473 (520)
Q Consensus 398 ~~~~Ig~g~~I~~~~i---~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 473 (520)
-.+.||+||.|+...+ ....||+||.|+++|.|.+..+-+. ... .. |+.||+||.|. +|+|.+
T Consensus 111 lGa~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~-~l~---~g---------~i~IG~~~~IG~~s~I~~ 177 (695)
T TIGR02353 111 LGAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-RLH---TG---------PVTLGRDAFIGTRSTLDI 177 (695)
T ss_pred cCCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCC-cee---ec---------CcEECCCcEECCCCEEcC
Confidence 3467888888876222 1466888888888888765433211 000 01 24555555554 555555
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
|++||++++|..++.+..+..+.++......
T Consensus 178 g~~Igd~a~vgagS~V~~g~~v~~~~~~~G~ 208 (695)
T TIGR02353 178 DTSIGDGAQLGHGSALQGGQSIPDGERWHGS 208 (695)
T ss_pred CCEECCCCEECCCCEecCCcccCCCCEEEee
Confidence 5666666555555444443334444444433
No 253
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.32 E-value=0.025 Score=62.44 Aligned_cols=218 Identities=14% Similarity=0.140 Sum_probs=123.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceec--CCccchhHHHHHHhHhC-----------CC-CeEEEEecc-ChhHHHH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL--GANYRLIDIPVSNCLNS-----------NI-SKIYVLTQF-NSASLNR 152 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv--~G~~plI~~~l~~l~~~-----------gi-~~I~Iv~~~-~~~~i~~ 152 (520)
.++.+|+||||.||||+ ..-||-++|+ ...+++++..++++... +. -.++|-+.+ ..+...+
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~ 203 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLK 203 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHH
Confidence 57899999999999998 5689999998 22249999999997543 11 235666764 4677888
Q ss_pred HHHHhhhccCCC----CcCCCeEEEeeccc-----C---CCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCc
Q 010006 153 HLSRAYASNMGG----YKNEGFVEVLAAQQ-----S---PENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGD 214 (520)
Q Consensus 153 ~l~~~~~~~~~~----~~~~~~v~vl~~~~-----~---~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD 214 (520)
+|++...|++.. .|..+.+..+.... . +....| +.|.++-.... ++.+...+.+++.+...|
T Consensus 204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vD 283 (615)
T PLN02830 204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDT 283 (615)
T ss_pred HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEecc
Confidence 998743333221 11111111111110 0 001112 34554433322 233444567889999999
Q ss_pred e-eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEe--CCCCC----EEEeeeCCChhhhhhcccccccccCCc
Q 010006 215 H-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGR----IIEFSEKPKGEQLKAMKVDTTILGLDD 287 (520)
Q Consensus 215 ~-l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~--d~~g~----V~~~~ekp~~~~~~~~~~~~~~~~~~~ 287 (520)
. |...-.-.++-.+..++.++.+-+.+.. +...-|+++. ..+|+ ++++.|.+..-.. ...+..-+.
T Consensus 284 N~L~~~Adp~flG~~~~~~~d~~~kvv~K~--~~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~--a~~p~g~l~--- 356 (615)
T PLN02830 284 NGLVFKAIPAALGVSATKGFDMNSLAVPRK--AKEAIGAIAKLTHKDGREMVINVEYNQLDPLLRA--TGHPDGDVN--- 356 (615)
T ss_pred chhhhcccHHHhHHHHhcCCceEEEEEECC--CCcccceEEEEecCCCCeeeEEEeecccCHHHHh--ccCCCcccc---
Confidence 9 4443346788888888888877776643 3345555554 12343 4466665443211 111111110
Q ss_pred hhhccCCceeeeeEEEEeHHHHHHHHhh
Q 010006 288 ERAKEMPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 288 ~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
.......+-.++...+++-+.+.+++++
T Consensus 357 ~~~~~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 357 DETGYSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred cccccccCCCCceeeEeeHHHHHHHHHh
Confidence 0001222334788889998888777764
No 254
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.20 E-value=0.00087 Score=60.47 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=13.2
Q ss_pred eEECCCCEECC-CCEEcc-cEEEC
Q 010006 416 SVVGLRSCISE-GAIIED-TLLMG 437 (520)
Q Consensus 416 s~Ig~~~~Ig~-~~~I~~-~~i~~ 437 (520)
..||+++.|+. .|.+.. .+.++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG 25 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIG 25 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEEC
Confidence 35777788877 455553 34444
No 255
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.13 Score=53.10 Aligned_cols=352 Identities=17% Similarity=0.173 Sum_probs=168.3
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCCCeEEEE-eccCh-hHHHHHHHHhhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNISKIYVL-TQFNS-ASLNRHLSRAYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi~~I~Iv-~~~~~-~~i~~~l~~~~~~~ 161 (520)
.++..+=|-||.||-|+ -.-||.+++|......+|-++.+... .+++--.|+ ..++- ++...++.+.+...
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 46778889999999998 56899999997666877766655543 344433343 34554 55666676644432
Q ss_pred CC------CCcCCCeEE-Eeeccc---CCCCCCCc-cCcHH---HHHHH--HHHhhhcCcceEEEEeCceecc-ccHHHH
Q 010006 162 MG------GYKNEGFVE-VLAAQQ---SPENPNWF-QGTAD---AVRQY--LWLFEEHNVLEFLVLAGDHLYR-MDYERF 224 (520)
Q Consensus 162 ~~------~~~~~~~v~-vl~~~~---~~~~~~~~-~Gt~~---al~~~--~~~l~~~~~~~~Lvl~gD~l~~-~dl~~l 224 (520)
+. ++|..-..+ .++... ......|+ .|.++ +++.. ++.+-.++.|.++|.+.|.+-. .||. +
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~-I 257 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN-I 257 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-H
Confidence 11 111111111 111111 11224564 35443 33321 1222234678999999999764 5654 3
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEE
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVI 304 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyif 304 (520)
++.....+.+..+-+++....+...=-++..+..-|..++..-|.....+-..+ ..-.+.++.--++
T Consensus 258 Ln~~i~~~~ey~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~-------------kkFkifNTNNlWi 324 (498)
T KOG2638|consen 258 LNHVINNNIEYLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSI-------------KKFKIFNTNNLWI 324 (498)
T ss_pred HHHHhcCCCceEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccc-------------eeEEEeccCCeEE
Confidence 444445566655555553322221111222322234555555555432110000 0011445555567
Q ss_pred eHHHHHHHHhhhCCCC------C--CccccchHh------hhhC-CceEEEEEecceEEeCCCHHHHHHhhhhcccCCCC
Q 010006 305 SKDVMLNLLRDKFPGA------N--DFGSEVIPG------ATSI-GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (520)
Q Consensus 305 s~~vl~~ll~~~~~~~------~--~~~~dil~~------li~~-~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~ 369 (520)
+-..+++++++..-+. . +...++|+. +++. ...+.+..-...+..+.|-.|++-....+....+.
T Consensus 325 nLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld~G 404 (498)
T KOG2638|consen 325 NLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLDNG 404 (498)
T ss_pred ehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeeccCC
Confidence 7777777877532110 0 111222221 1221 11122222234677777777766554443322211
Q ss_pred CCccccCCCccccCCCcCCCceee-cc---cccc--eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccc
Q 010006 370 DFSFYDRSAPIYTQPRYLPPSKML-DA---DVTD--SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET 443 (520)
Q Consensus 370 ~~~~~~~~~~i~~~~~~~~~~~i~-~~---~i~~--~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~ 443 (520)
+..+++.-...++..+. +. ++.+ .-+-.=-.| -.+.+-.|.-++..|.++.+++.+++-++
T Consensus 405 -------sl~l~~~r~~~t~P~vkLg~~F~kv~~f~~rfp~iP~i--leLdhLtVsGdV~FGknV~LkGtViIia~---- 471 (498)
T KOG2638|consen 405 -------SLTLSPSRFGPTPPLVKLGSEFKKVEDFLGRFPGIPDI--LELDHLTVSGDVWFGKNVSLKGTVIIIAN---- 471 (498)
T ss_pred -------eEEechhhcCCCCCeeecchhhhHHHHHHhcCCCCCcc--ceeceEEEeccEEeccceEEeeEEEEEec----
Confidence 11111111111111111 11 1111 000000011 11224444555888888888888775442
Q ss_pred cccccccccCCCcceeeCCCCEEcceEECCCCEECC
Q 010006 444 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479 (520)
Q Consensus 444 ~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~ 479 (520)
..-++.|-+|+++++++|-.|++|-+
T Consensus 472 ----------~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 472 ----------EGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred ----------CCCeeecCCCCeeecceEeccccccc
Confidence 12236789999999998888887754
No 256
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.14 E-value=0.0027 Score=59.63 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=9.0
Q ss_pred CeEEccCeEEEcCCCEeCCCcc
Q 010006 498 GYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 498 ~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++.|.+| |+||+|++|++|++
T Consensus 136 ~a~IlpG-V~IG~gavigagsV 156 (190)
T COG0110 136 GAVILPG-VTIGEGAVIGAGSV 156 (190)
T ss_pred ccEECCC-EEECCCcEEeeCCE
Confidence 3333344 44444444444443
No 257
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.06 E-value=0.0016 Score=61.63 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=42.3
Q ss_pred eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCc
Q 010006 411 CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSV 489 (520)
Q Consensus 411 ~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v 489 (520)
+.++..++|+...+|+++.|...++-.+ +.|+.+|.+. |.++++++-||+++.|.+.-.+
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayiGE~~sI~gkl~v 89 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTV 89 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEEeccceeeeeEEE
Confidence 4444566677777777777766666533 4666666665 6666666666666666553333
Q ss_pred CCcccccCCeEEccC
Q 010006 490 QEAARETDGYFIKSG 504 (520)
Q Consensus 490 ~~~~~~~~~~~I~~~ 504 (520)
...-.+|..+.|..|
T Consensus 90 ~gdLdig~dV~Iegg 104 (277)
T COG4801 90 IGDLDIGADVIIEGG 104 (277)
T ss_pred ecccccccceEEecC
Confidence 333334444444433
No 258
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.01 E-value=0.0032 Score=59.71 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=45.4
Q ss_pred eEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEE
Q 010006 400 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 477 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 477 (520)
.++++...+++ +.|.+.+++.+|+|+.+|.+...++..+|- -||++++|. +-++...--|
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~da------------------yiGE~~sI~gkl~v~gdLdi 95 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDA------------------YIGEFSSIKGKLTVIGDLDI 95 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCce------------------EEeccceeeeeEEEeccccc
Confidence 34555555555 555566777788888888888777777653 367777776 5566666777
Q ss_pred CCCcEEec
Q 010006 478 GDNVKIVN 485 (520)
Q Consensus 478 g~~~~i~~ 485 (520)
|+++.|.+
T Consensus 96 g~dV~Ieg 103 (277)
T COG4801 96 GADVIIEG 103 (277)
T ss_pred ccceEEec
Confidence 77777754
No 259
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.00 E-value=0.00068 Score=45.49 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~ 431 (520)
+++|+++|+|+. +.|. ++.||++|.|+++|.|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 356777777776 5544 56666666666666654
No 260
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.96 E-value=0.0011 Score=57.93 Aligned_cols=100 Identities=9% Similarity=0.109 Sum_probs=60.5
Q ss_pred ceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCccee-eCCCCEEcceEECCCCE
Q 010006 399 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG-IGKNSHIKRAIIDKNAR 476 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-Ig~~~~i~~~ii~~~~~ 476 (520)
|.++-..++|.+ +.|++- -.+++||..|.|+...++.-.+ . ..++...-...||+.+.
T Consensus 33 NI~lnGKtIv~~g~iIRGD--LAnVr~GryCV~ksrsvIRPp~------------------K~FSKg~affp~hiGdhVF 92 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGD--LANVRIGRYCVLKSRSVIRPPM------------------KIFSKGPAFFPVHIGDHVF 92 (184)
T ss_pred eEEEcCcEEEeeCcEEecc--cccceEcceEEeccccccCCch------------------HHhcCCceeeeeeecceEE
Confidence 344444444444 333321 1356666666665555444321 1 12333344567788888
Q ss_pred ECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 477 IGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 477 Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|++.|++ |...++.-+++|.+++||.+ |++-+=+.|-+++|+
T Consensus 93 ieE~cVV-nAAqIgsyVh~GknaviGrr-CVlkdCc~ild~tVl 134 (184)
T KOG3121|consen 93 IEEECVV-NAAQIGSYVHLGKNAVIGRR-CVLKDCCRILDDTVL 134 (184)
T ss_pred EecceEe-ehhhheeeeEeccceeEcCc-eEhhhheeccCCccc
Confidence 8888887 45666667777778888888 888888888888764
No 261
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.92 E-value=0.0013 Score=58.07 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=18.9
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEE
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII 430 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I 430 (520)
+.|.+++++-. +.|+ +..|+++|.|.+.+++
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~ 41 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVF 41 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEE
Confidence 56888888875 5555 4555555555555443
No 262
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.59 E-value=0.0016 Score=43.59 Aligned_cols=13 Identities=46% Similarity=0.570 Sum_probs=4.9
Q ss_pred ECCCCEECCCcEE
Q 010006 471 IDKNARIGDNVKI 483 (520)
Q Consensus 471 i~~~~~Ig~~~~i 483 (520)
|++++.|++++.|
T Consensus 4 Ig~~~~i~~~~~i 16 (36)
T PF00132_consen 4 IGDNVIIGPNAVI 16 (36)
T ss_dssp EETTEEEETTEEE
T ss_pred EcCCCEECCCcEe
Confidence 3333333333333
No 263
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.27 E-value=0.0047 Score=41.04 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=14.1
Q ss_pred eEECCCcEEee-eEEeeeEECCCCEECCCCEE
Q 010006 400 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAII 430 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I 430 (520)
..||++|+|+. |.| ...||++|.|+.++.|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 46777777776 544 3445555555555444
No 264
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.85 E-value=0.0087 Score=39.76 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=3.0
Q ss_pred CCCCEECCCcE
Q 010006 472 DKNARIGDNVK 482 (520)
Q Consensus 472 ~~~~~Ig~~~~ 482 (520)
|+||.||.++.
T Consensus 5 G~~~~ig~~~~ 15 (34)
T PF14602_consen 5 GDNCFIGANST 15 (34)
T ss_dssp -TTEEE-TT-E
T ss_pred CCCEEECcccc
Confidence 33333333333
No 265
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.26 E-value=0.09 Score=49.51 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=59.1
Q ss_pred cchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHh
Q 010006 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (520)
Q Consensus 121 ~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l 200 (520)
+|||+|+++.+..+++.+++|+++. +++.+++.. + + +.++.. +. .|...+++.++..+
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-~--------~---v~~i~~------~~--~G~~~si~~al~~~ 87 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-L--------G---APVLRD------PG--PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-c--------C---CEEEec------CC--CCHHHHHHHHHHHh
Confidence 4999999999999888888888863 344444332 1 1 233321 11 38899999998776
Q ss_pred hhcCcceEEEEeCce-ecc-ccHHHHHHHHH
Q 010006 201 EEHNVLEFLVLAGDH-LYR-MDYERFIQAHR 229 (520)
Q Consensus 201 ~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~ 229 (520)
.. ..+.++++.||+ ++. ..+.++++.+.
T Consensus 88 ~~-~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 88 RE-PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hc-cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 53 235899999999 555 45888888653
No 266
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.17 E-value=0.42 Score=41.23 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=66.7
Q ss_pred ceecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
++|..++.+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ......+... . ..|.+.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~----~~g~~~ 67 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRVINE----E----NQGLAA 67 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEEEec----C----CCChHH
Confidence 4566666689999999999987 7889999887777777766663321 0111111111 1 267888
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHH
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (520)
++..++.... .+.++++.+|..+..+ +..++..+.
T Consensus 68 ~~~~~~~~~~---~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 68 ARNAGLKAAR---GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHhc---CCEEEEECCCCccCccHHHHHHHHHh
Confidence 8888887664 4789999999988777 555534443
No 267
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=93.13 E-value=0.16 Score=54.01 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=53.4
Q ss_pred CceEEEEEec-ceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eE
Q 010006 335 GMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CK 412 (520)
Q Consensus 335 ~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~ 412 (520)
+.++.+..+. +.++-+||-.+|++-...- +.+. +. ..++ ..+.....+.+.. +.
T Consensus 226 ~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~-----~~l~-------~~-------~~~~-----~~~~~~~~~~~~~~~~ 281 (414)
T PF07959_consen 226 GTPLNVVPLPNGKFYHFGTSREYLEHLTSD-----SELG-------IM-------RRKF-----SHSPATTPSDSEASSC 281 (414)
T ss_pred hccccccccCCceEEEecCCHHHHHhhccC-----cccc-------cc-------eeee-----eccccccccccCCCee
Confidence 5667776665 6788888888765543322 1110 00 0000 1111112223333 44
Q ss_pred EeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECC
Q 010006 413 IHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 473 (520)
Q Consensus 413 i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 473 (520)
|.+|+|..++.||+++.|++|.+-++ +.||++|.|.++-+..
T Consensus 282 VinSil~~~~~vg~~svIe~s~l~~~-------------------~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 282 VINSILEGGVSVGPGSVIEHSHLGGP-------------------WSIGSNCIISGVDINS 323 (414)
T ss_pred EEEeEecCCceECCCCEEEeeecCCC-------------------CEECCCCEEECCcccc
Confidence 55778888888888888887777553 5677777777664443
No 268
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=91.35 E-value=2.4 Score=39.58 Aligned_cols=105 Identities=23% Similarity=0.195 Sum_probs=62.8
Q ss_pred eEEEEEe---CCCCCCCCcccc-CCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 90 VLGIILG---GGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 90 ~~aIILA---aG~GtRl~PlT~-~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|++||+- ++.-|||.|.-. +.-+-+ . +-|+-.++..+... +.+|.|++.. +++..+-.
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~---~--laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~~a~---------- 62 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENF---A--LAMLVDVLGALAGV-LGEITVVTPD--EEVLVPAT---------- 62 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHH---H--HHHHHHHHHHhhhh-cCCceEEcCC--hHhhhhcc----------
Confidence 4566664 467889987522 222222 1 25888888888875 7899999842 22221111
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHH
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAH 228 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h 228 (520)
. .+++.. + +.-.++.+++..+.. ...++|+++|+ +. ..++.++++..
T Consensus 63 ---~-~~vl~d------~----dLN~Ai~aa~~~~~~--p~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 63 ---K-LEVLAD------P----DLNTAINAALDEIPL--PSEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred ---c-ceeeec------c----chHHHHHHHHhhCCC--CcceEEEecccccCCHHHHHHHHHhc
Confidence 1 134322 1 123577777766653 25699999999 44 45688888764
No 269
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.33 E-value=3.4 Score=36.28 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=69.4
Q ss_pred ceecCCccchhHHHHHHhHhC--CCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 114 AVPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~--gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
.+|..+....|..+|+.+.+. ...+|+|+-....+...+.+.+.... ...+.++.... + .|.+.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~-------~~~i~~i~~~~---n----~g~~~ 68 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAES-------DPNIRYIRNPE---N----LGFSA 68 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCC-------STTEEEEEHCC---C----SHHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccc-------ccccccccccc---c----ccccc
Confidence 355554446788888888775 45677777665545555555553211 11244554322 1 57788
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEEEe
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALP 241 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~~ 241 (520)
++..++.... .+.++++..|.++..+ +..+++.+.+.+.++.+....
T Consensus 69 ~~n~~~~~a~---~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 69 ARNRGIKHAK---GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHH-----SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccccc---eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 8888887765 3699999999988777 888999888877765544433
No 270
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=88.36 E-value=8 Score=36.37 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=60.2
Q ss_pred eecCCccchhHHHHHHhHhCC---CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN---ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g---i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
+|..+....|..+++.+.+.- --+|+||-....+...+.+.+... ....+.++... .+ .|-+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~-------~~~~i~~~~~~---~n----~G~~~ 68 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK-------EYPRVRLIVRP---GK----RGLGS 68 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH-------hCCceEEEecC---CC----CChHH
Confidence 454433346777777776532 356777754333333333332100 01113343321 11 67888
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEE
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl 237 (520)
++..++.... .+.++++.+|.....+ +..+++.....+.+++.
T Consensus 69 a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 69 AYIEGFKAAR---GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred HHHHHHHHcC---CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 8888876654 3788899999977765 88888875555566543
No 271
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=87.61 E-value=2.8 Score=40.66 Aligned_cols=49 Identities=24% Similarity=0.178 Sum_probs=36.4
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~ 238 (520)
.|-+.++..++.... .+.++++.+|...+.+ +..+++...+.+.+++..
T Consensus 79 ~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 677788888776544 4789999999987765 888888776666665443
No 272
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=86.66 E-value=2.1 Score=40.26 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=37.0
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~ 238 (520)
.|.+.++..++.... .+.++++.+|..+..+ +..+++...+.+.++++.
T Consensus 68 ~G~~~a~~~g~~~a~---gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 68 RGKGGAVRAGMLAAR---GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred CCcHHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 688889998887665 4789999999977765 888888755556665444
No 273
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=86.31 E-value=9.6 Score=36.17 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=63.2
Q ss_pred ceecCCcc-chhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 114 AVPLGANY-RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 114 Llpv~G~~-plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
++|..+.. ..|..+|+.+.+....+|+||.....+...+.+...+. ...+.++.. .+ .|.+.+
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~--------~~~~~v~~~----~~----~g~~~a 68 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK--------YGGIFVITV----PH----PGKRRA 68 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc--------CCcEEEEec----CC----CChHHH
Confidence 34555454 68888899888765678888877666665555533221 111333322 11 577788
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHH
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (520)
+..++...+ .+.++++.+|..+..+ +.++++.+.
T Consensus 69 ~n~g~~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 69 LAEGIRHVT---TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHhC---CCEEEEECCCceeChhHHHHHHHhcc
Confidence 877776543 5889999999988877 777877765
No 274
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=84.00 E-value=17 Score=34.53 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=62.5
Q ss_pred eecCCccchhHHHHHHhHhCCC----CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcH
Q 010006 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~ 190 (520)
+|..++.+.|..+++.+.+... -+|+|+-+...+...+.+..... ....+.++... + .|-+
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~-------~~~~v~~i~~~----~----~~~~ 70 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA-------KDPRIRLIDNP----K----RIQS 70 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh-------cCCeEEEEeCC----C----CCch
Confidence 4554444677888888876543 37777766555555555544211 01124444211 1 3556
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEE
Q 010006 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADIT 236 (520)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~t 236 (520)
.++..++...+ .+.++++.+|.....+ +.++++.+.+.+.++.
T Consensus 71 ~a~N~g~~~a~---~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 71 AGLNIGIRNSR---GDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred HHHHHHHHHhC---CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 67777766553 4789999999977766 8888877665555543
No 275
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.89 E-value=19 Score=31.54 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=63.0
Q ss_pred eecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
+|.-++..+|..+++.+.+.. ..+++|+.....+...+.+.+.+. .+.++... .+ .|.+.+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~---~~----~g~~~a 65 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNG---EN----LGFGAG 65 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecC---CC----cChHHH
Confidence 555555578899999997752 457777776555555555555221 13333211 11 678888
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhc
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (520)
+..++.... .+.++++..|..+..+ +..+++.+.+.
T Consensus 66 ~n~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 66 NNQGIREAK---GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred hhHHHhhCC---CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 888887664 5788899999977766 77777765544
No 276
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=82.21 E-value=19 Score=32.52 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=62.6
Q ss_pred eecCCccchhHHHHHHhHhC----CCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcH
Q 010006 115 VPLGANYRLIDIPVSNCLNS----NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~----gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~ 190 (520)
+|.......|..+|+.+.+. ...+|+|+-+...+...+.+.... .. ...+.++... .+ .|.+
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~-~~------~~~~~~~~~~---~n----~G~~ 68 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA-AR------VPRVRVIRLS---RN----FGKG 68 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH-Hh------CCCeEEEEcc---CC----CCcc
Confidence 34433324566777777664 357777776554444444443311 00 0112233221 12 6778
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEE
Q 010006 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (520)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~ 239 (520)
.++..++.... .+.++++.+|.....+ +..+++...+.+.++.+..
T Consensus 69 ~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 69 AAVRAGFKAAR---GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 88888876654 3789999999977766 8888887566666654443
No 277
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=80.21 E-value=25 Score=30.57 Aligned_cols=101 Identities=20% Similarity=0.143 Sum_probs=58.9
Q ss_pred eecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
+|.-+....|..+|+.+.+.. ..+++|+-....+...+.+.+.... .. ..+.++... .+ .|.+.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-----~~-~~~~~~~~~---~~----~g~~~~ 69 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-----YI-RRVLVVRDK---EN----GGKAGA 69 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-----cc-ceEEEEEec---cc----CCchHH
Confidence 455544468888888888764 4577777655444444444431110 00 112222111 11 677888
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhc
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (520)
+..++.... .+.++++.+|.+...+ +..++..+.+.
T Consensus 70 ~n~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 70 LNAGLRHAK---GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHHhcC---CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 888876653 5789999999977766 66664555443
No 278
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=75.96 E-value=62 Score=30.94 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=53.9
Q ss_pred chhHHHHHHhHhCCC----CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHH
Q 010006 122 RLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (520)
Q Consensus 122 plI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~ 197 (520)
..|...|+.+.+... -+++|+.....+...+.+.+... . .+.++... .+ .|.+.++..++
T Consensus 42 ~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-----~----~v~~i~~~---~~----~g~~~a~n~gi 105 (251)
T cd06439 42 AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYAD-----K----GVKLLRFP---ER----RGKAAALNRAL 105 (251)
T ss_pred HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhh-----C----cEEEEEcC---CC----CChHHHHHHHH
Confidence 456666666654322 26777766555444444443110 0 13333221 11 57788888887
Q ss_pred HHhhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
.... .+.++++.+|.+...+ +.++++....
T Consensus 106 ~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 106 ALAT---GEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHcC---CCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 6654 3889999999988766 8888877643
No 279
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.00 E-value=41 Score=31.40 Aligned_cols=106 Identities=7% Similarity=0.034 Sum_probs=60.0
Q ss_pred ceecCCccchhHHHHHHhHhCCC----CeEEEEeccChhHHHHHHH-HhhhccCCCCcCCCeEEEeecccCCCCCCCccC
Q 010006 114 AVPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLS-RAYASNMGGYKNEGFVEVLAAQQSPENPNWFQG 188 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~-~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~G 188 (520)
++|..+....|..+|+.+....- -+|+||-....+...+.+. ... . ....+.++.... .. ..|
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~------~~~~v~~~~~~~-~~----~~g 69 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAA-K------PNFQLKILNNSR-VS----ISG 69 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHh-C------CCcceEEeeccC-cc----cch
Confidence 35665554678888888865422 3676666544443334443 100 0 111244443321 11 156
Q ss_pred cHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCc
Q 010006 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDAD 234 (520)
Q Consensus 189 t~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~ 234 (520)
-+.++..++.... .+.++++.+|.+...+ +.++++.+.+.+..
T Consensus 70 ~~~a~n~g~~~~~---~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 70 KKNALTTAIKAAK---GDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred hHHHHHHHHHHhc---CCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 6677766665443 4789999999988776 78888766554433
No 280
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=72.06 E-value=70 Score=30.61 Aligned_cols=109 Identities=9% Similarity=0.056 Sum_probs=61.2
Q ss_pred eecCCccchhHHHHHHhHhCCC----CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcH
Q 010006 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~ 190 (520)
+|.-+.--.|..+|+.+.+..- -+|+||.....+...+.+.+. .. . ....++.... .+ ..|.+
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~-~~------~-~~~~i~~~~~--~~---~~G~~ 73 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL-RL------P-SIFRVVVVPP--SQ---PRTKP 73 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh-cc------C-CCeeEEEecC--CC---CCchH
Confidence 3443222467777777766432 256666554444444444441 10 0 0122222111 11 15778
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEE
Q 010006 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (520)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~ 239 (520)
.++..++.... .+.++++.+|.....+ +.++++.+.+.+.++.++.
T Consensus 74 ~a~n~g~~~a~---gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 74 KACNYALAFAR---GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred HHHHHHHHhcC---CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 88888886544 4789999999988776 7788887765445554443
No 281
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.86 E-value=52 Score=29.75 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=56.5
Q ss_pred eecCCccchhHHHHHHhHhCCCC--eEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
+|.-+....|+.+|+.+.+.... +|+||-+...+...+.+.+... ..+.+... .+ .|.+.+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~---------~~~~~~~~----~~----~g~~~a 66 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED---------KITYWISE----PD----KGIYDA 66 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh---------hcEEEEec----CC----cCHHHH
Confidence 34433335788888888765544 5666654444444455544111 11222211 11 577888
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
+..++...+ .+.++++.+|.....+ +..+++...+
T Consensus 67 ~n~~~~~a~---~~~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 67 MNKGIALAT---GDIIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred HHHHHHHcC---CCEEEEeCCCcccCchHHHHHHHHHHh
Confidence 888876654 4789999999976655 7777744443
No 282
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=71.82 E-value=49 Score=32.61 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=56.7
Q ss_pred hhHHHHHHhHhCCCCeEEEEeccC--hhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHh
Q 010006 123 LIDIPVSNCLNSNISKIYVLTQFN--SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (520)
Q Consensus 123 lI~~~l~~l~~~gi~~I~Iv~~~~--~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l 200 (520)
.|...|+.+.+. ..+|+||=+.. .+.+.+.+.+ ...+.++... ++ .|-+.+...++...
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-----------~~~i~~i~~~---~N----~G~a~a~N~Gi~~a 69 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-----------GQKIALIHLG---DN----QGIAGAQNQGLDAS 69 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-----------CCCeEEEECC---CC----cchHHHHHHHHHHH
Confidence 566777777664 45776665442 2234333322 1124555422 22 78899999888776
Q ss_pred hhcCcceEEEEeCceecccc-HHHHHHHHHhcC
Q 010006 201 EEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (520)
Q Consensus 201 ~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (520)
.....+.++++..|.....+ +..+++...+.+
T Consensus 70 ~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 70 FRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence 44456899999999987766 777777765443
No 283
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.16 E-value=59 Score=29.87 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=58.7
Q ss_pred eecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
+|.-++...|..+|+.+.+.. -.+|+|+-+...+...+.+.+... ..+ +.++... .+ .|.+.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~-----~~~---i~~~~~~---~n----~g~~~~ 67 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGD-----LDN---IVYLRLP---EN----LGGAGG 67 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcC-----CCc---eEEEECc---cc----cchhhH
Confidence 344333357888888887643 246777765555555555555211 111 3333221 22 566777
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHH
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (520)
+..++........+.++++..|.....+ +..+++...
T Consensus 68 ~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 68 FYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 7776655432245788899999988877 667776655
No 284
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=71.13 E-value=81 Score=28.60 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=61.3
Q ss_pred ceecCCccchhHHHHHHhHhCCC----CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCc
Q 010006 114 AVPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt 189 (520)
++|..+....|..+|+.+.+... -+|+|+.....+...+.+.+ +. . .++.... ..+ .|.
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-~~--------~---~~~~~~~-~~~----~gk 64 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-AG--------A---TVLERHD-PER----RGK 64 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-cC--------C---eEEEeCC-CCC----CCH
Confidence 45655444678888888876432 45777765554544444433 11 1 1111111 111 578
Q ss_pred HHHHHHHHHHhh--hcCcceEEEEeCceecccc-HHHHHHHHHhcCCcE
Q 010006 190 ADAVRQYLWLFE--EHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 190 ~~al~~~~~~l~--~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+.++..++.... ....+.++++.+|.....+ +..+++.+.+ +.++
T Consensus 65 ~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~ 112 (183)
T cd06438 65 GYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA-GARV 112 (183)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCe
Confidence 888888876653 1235789999999988877 7777777653 4443
No 285
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=70.41 E-value=1.2e+02 Score=31.04 Aligned_cols=135 Identities=12% Similarity=0.130 Sum_probs=71.6
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHh---cCCcEEEEEEecCcccCcceEEEEeCCCCCEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE---TDADITVAALPMDEKRATAFGLMKIDEEGRII 262 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~---~~a~~tl~~~~~~~~~~~~~g~v~~d~~g~V~ 262 (520)
.|.+.++..++.... .+.++++.+|.-.+.+ +..+++...+ .+.++++...... .++..
T Consensus 148 ~G~~~A~~~Gi~~a~---gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~-------------~~~~~- 210 (333)
T PTZ00260 148 KGKGGAVRIGMLASR---GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHL-------------VDSDV- 210 (333)
T ss_pred CChHHHHHHHHHHcc---CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeecccc-------------ccCcc-
Confidence 688899998876543 4788999999976654 7777766543 4555544432110 00000
Q ss_pred EeeeCCChhh----hhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccchHhhhhCCceE
Q 010006 263 EFSEKPKGEQ----LKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRV 338 (520)
Q Consensus 263 ~~~ekp~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil~~li~~~~~v 338 (520)
....+.... ..... -..+++. .-.-..+|..+|+++++..++.....+...|..+++-.+...+.++
T Consensus 211 -~~~~~~~r~~~~~~~~~l-~~~~~~~-------~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I 281 (333)
T PTZ00260 211 -VAKRKWYRNILMYGFHFI-VNTICGT-------NLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPI 281 (333)
T ss_pred -cccCcHHHHHHHHHHHHH-HHHHcCC-------CcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCE
Confidence 000010000 00000 0000000 0012356899999999987765433333445567776666667777
Q ss_pred EEEEecceEEe
Q 010006 339 QAYLYDGYWED 349 (520)
Q Consensus 339 ~a~~~~g~w~d 349 (520)
.-+++. |.+
T Consensus 282 ~EvPv~--~~~ 290 (333)
T PTZ00260 282 AEVPVN--WTE 290 (333)
T ss_pred EEEcee--eEE
Confidence 777664 544
No 286
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=69.88 E-value=76 Score=33.17 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=59.8
Q ss_pred chhHHHHHHhHhCCC---CeEEEEeccChhHHHHHHHH---hhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHH
Q 010006 122 RLIDIPVSNCLNSNI---SKIYVLTQFNSASLNRHLSR---AYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQ 195 (520)
Q Consensus 122 plI~~~l~~l~~~gi---~~I~Iv~~~~~~~i~~~l~~---~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~ 195 (520)
..|...|+.+.+... -+|+||-+...+...+.+.+ .++ ....+.++.... .+++| .|...++.+
T Consensus 53 ~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~-------~~~~i~vi~~~~--~~~g~-~Gk~~A~n~ 122 (384)
T TIGR03469 53 DVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG-------RGDRLTVVSGQP--LPPGW-SGKLWAVSQ 122 (384)
T ss_pred hHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC-------CCCcEEEecCCC--CCCCC-cchHHHHHH
Confidence 556777777765432 36777766444433333322 111 011244543221 12233 577778888
Q ss_pred HHHHhhhcC--cceEEEEeCceecccc-HHHHHHHHHhcCCcE
Q 010006 196 YLWLFEEHN--VLEFLVLAGDHLYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 196 ~~~~l~~~~--~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+.....+.. .|.++++.+|.....+ +.++++...+.+.++
T Consensus 123 g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 123 GIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 776554221 4789999999987766 888888877665554
No 287
>PRK10073 putative glycosyl transferase; Provisional
Probab=69.60 E-value=65 Score=32.98 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=58.1
Q ss_pred chhHHHHHHhHhCCC--CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHH
Q 010006 122 RLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (520)
Q Consensus 122 plI~~~l~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~ 199 (520)
..|...|+.+.+... -+|+||-....+...+.+.+ +.. .+..+.++. + .+ .|.+.+...++..
T Consensus 19 ~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~-~~~------~~~~i~vi~--~--~n----~G~~~arN~gl~~ 83 (328)
T PRK10073 19 KDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKH-YAE------NYPHVRLLH--Q--AN----AGVSVARNTGLAV 83 (328)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHH-HHh------hCCCEEEEE--C--CC----CChHHHHHHHHHh
Confidence 578888888876533 35666643332222222222 100 112244543 2 12 6777787777765
Q ss_pred hhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEE
Q 010006 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (520)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl 237 (520)
.. .+.++++.+|-....+ +..+++...+.+.++++
T Consensus 84 a~---g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 84 AT---GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CC---CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 54 4789999999977766 77888877666677643
No 288
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=67.97 E-value=5.5 Score=42.36 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=46.3
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCc--cchhHHHHHHhHh----------CCCC-eEEEEec-cChhHHHHH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN--YRLIDIPVSNCLN----------SNIS-KIYVLTQ-FNSASLNRH 153 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~--~plI~~~l~~l~~----------~gi~-~I~Iv~~-~~~~~i~~~ 153 (520)
.+..++++|||.|||++ ...||.+.|++.. ..++++..+.+.. .|.+ ..||-|. .-.+...+|
T Consensus 96 ~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 46899999999999998 5689999999643 1477776665432 2211 2244444 445666777
Q ss_pred HHHhhhcc
Q 010006 154 LSRAYASN 161 (520)
Q Consensus 154 l~~~~~~~ 161 (520)
+.....++
T Consensus 173 f~~~~~FG 180 (477)
T KOG2388|consen 173 FESHKYFG 180 (477)
T ss_pred HhhcCCCC
Confidence 77533333
No 289
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=67.28 E-value=81 Score=31.42 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=61.1
Q ss_pred eecCCcc-chhHHHHHHhHhCC----CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCc
Q 010006 115 VPLGANY-RLIDIPVSNCLNSN----ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (520)
Q Consensus 115 lpv~G~~-plI~~~l~~l~~~g----i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt 189 (520)
+|.-+.. ..|...|+.+.+.- ..+|+||-+...+.....+.+..... ....+.++.... + .|-
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~-----~~~~v~vi~~~~---n----~G~ 71 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK-----YLPKVKVLRLKK---R----EGL 71 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh-----cCCcEEEEEcCC---C----CCH
Confidence 4555443 57888888887532 13787776544443333332211000 011245553221 2 677
Q ss_pred HHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCC
Q 010006 190 ADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDA 233 (520)
Q Consensus 190 ~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 233 (520)
+.+.-.++.... .+.++++.+|.....+ +..+++...+.+.
T Consensus 72 ~~a~N~g~~~A~---gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 72 IRARIAGARAAT---GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred HHHHHHHHHHcc---CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 778777776544 4889999999987766 8888888765543
No 290
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=66.30 E-value=89 Score=28.54 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=58.0
Q ss_pred ceecCCcc--chhHHHHHHhHhCC--CCeEEEEeccC-hhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccC
Q 010006 114 AVPLGANY--RLIDIPVSNCLNSN--ISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQG 188 (520)
Q Consensus 114 Llpv~G~~--plI~~~l~~l~~~g--i~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~G 188 (520)
++|+..+- ..|..+|+.+.+.. -.+++||-... .+...+.+.+ +.. . .. +.++... .+ .|
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~-~~~----~--~~-i~~i~~~---~n----~G 67 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEE-FKR----K--LP-LKVVPLE---KN----RG 67 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHH-HHh----c--CC-eEEEEcC---cc----cc
Confidence 45665321 27889999987753 25666665433 3334433333 110 0 11 3343221 12 68
Q ss_pred cHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 189 t~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
.+.+...++.... .+.++++.+|.+...+ +..+++...+
T Consensus 68 ~~~a~N~g~~~a~---gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 68 LGKALNEGLKHCT---YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 8888888776543 4788899999977766 7778877644
No 291
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=65.72 E-value=67 Score=34.33 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=54.3
Q ss_pred chhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHH
Q 010006 122 RLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (520)
Q Consensus 122 plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~ 199 (520)
..|..+++.+.+.. --+|+|+.....+...+.+.+... ....+.++.... + .|-+.++..++..
T Consensus 88 ~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~-------~~~~v~vv~~~~---n----~Gka~AlN~gl~~ 153 (444)
T PRK14583 88 LNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLA-------EDPRLRVIHLAH---N----QGKAIALRMGAAA 153 (444)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHH-------hCCCEEEEEeCC---C----CCHHHHHHHHHHh
Confidence 44666777766542 136777765444443333333110 011144443221 2 6788888888755
Q ss_pred hhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
.. .|.++++.+|.+.+.| +..+++.+.+
T Consensus 154 a~---~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 154 AR---SEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred CC---CCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 43 5889999999988877 7777776654
No 292
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.98 E-value=1.1e+02 Score=27.91 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=56.5
Q ss_pred eecCCcc-chhHHHHHHhHhCCC--CeEEEEeccChh-HHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcH
Q 010006 115 VPLGANY-RLIDIPVSNCLNSNI--SKIYVLTQFNSA-SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (520)
Q Consensus 115 lpv~G~~-plI~~~l~~l~~~gi--~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~ 190 (520)
+|..+.. ..|..+|+.+.+.-. -+|+|+-+...+ .+...+.. +.. ....+.++... .+ .|.+
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~-~~~------~~~~~~~~~~~---~~----~g~~ 72 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKK-YAA------QDPRIKVVFRE---EN----GGIS 72 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHH-HHh------cCCCEEEEEcc---cC----CCHH
Confidence 4444443 567777777766433 266666543322 33333332 110 01113333211 12 5777
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHH-HhcCCc
Q 010006 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH-RETDAD 234 (520)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h-~~~~a~ 234 (520)
.++..++.... .+.++++..|.....+ +..+++.+ ...+.+
T Consensus 73 ~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 73 AATNSALELAT---GEFVALLDHDDELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred HHHHHHHHhhc---CCEEEEECCCCcCChHHHHHHHHHHHhCCCCC
Confidence 88877776544 4788899999977776 88888877 333443
No 293
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=62.16 E-value=1e+02 Score=27.67 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=33.5
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADIT 236 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~t 236 (520)
.|.+.++..++.... .+.++++.+|.....+ +..+++. .+.+.+++
T Consensus 66 ~G~~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v 112 (181)
T cd04187 66 FGQQAALLAGLDHAR---GDAVITMDADLQDPPELIPEMLAK-WEEGYDVV 112 (181)
T ss_pred CCcHHHHHHHHHhcC---CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEE
Confidence 688888888876554 4789999999987766 7778776 34455543
No 294
>PRK11204 N-glycosyltransferase; Provisional
Probab=61.53 E-value=1e+02 Score=32.45 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=54.9
Q ss_pred chhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHH
Q 010006 122 RLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (520)
Q Consensus 122 plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~ 199 (520)
..|..+++.+.+.. --+|+|+-....+...+.+++... ....+.++... .+ .|.++++..++..
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~-------~~~~v~~i~~~---~n----~Gka~aln~g~~~ 132 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAA-------QIPRLRVIHLA---EN----QGKANALNTGAAA 132 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHH-------hCCcEEEEEcC---CC----CCHHHHHHHHHHH
Confidence 45666777766543 236777765444443333333110 01113444311 12 6788888888765
Q ss_pred hhhcCcceEEEEeCceecccc-HHHHHHHHHhc
Q 010006 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (520)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (520)
.+ .|.++++.+|.+...| +.++++.+.+.
T Consensus 133 a~---~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 133 AR---SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred cC---CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 43 4889999999988877 88888777543
No 295
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=61.24 E-value=1.2e+02 Score=28.59 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=50.9
Q ss_pred chhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhh
Q 010006 122 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFE 201 (520)
Q Consensus 122 plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~ 201 (520)
..|..+|+.+.+. ..+|+||=+...+........ ....+.++... .+ .|-+.+...++....
T Consensus 11 ~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~----------~~~~i~~i~~~---~n----~G~~~a~N~g~~~a~ 72 (237)
T cd02526 11 SKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL----------NSEKIELIHLG---EN----LGIAKALNIGIKAAL 72 (237)
T ss_pred HHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc----------cCCcEEEEECC---Cc----eehHHhhhHHHHHHH
Confidence 5778888888776 567766654322222221111 01124444322 22 677788887776654
Q ss_pred hcCcceEEEEeCceecccc-HHHHH
Q 010006 202 EHNVLEFLVLAGDHLYRMD-YERFI 225 (520)
Q Consensus 202 ~~~~~~~Lvl~gD~l~~~d-l~~ll 225 (520)
....+.++++.+|...+.+ +..++
T Consensus 73 ~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 73 ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 3234789999999988766 66764
No 296
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=59.99 E-value=6.7 Score=37.77 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=49.4
Q ss_pred eEEEEEeCC---CCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 90 VLGIILGGG---AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 90 ~~aIILAaG---~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++||+--. .-|||.|.-......- +. .-|+..++..+.. +. ++||+. .+.+.+.-..
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~~--La--~aMl~Dvl~al~~--v~-v~vVs~--d~~v~~~a~~---------- 61 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEEREA--LA--LAMLRDVLAALRA--VD-VVVVSR--DPEVAALARA---------- 61 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHHH--HH--HHHHHHHHHHHHH---S-EEEEES----S-TTTTT-----------
T ss_pred CeEEEEcCCCCccccccCccCCHHHHHH--HH--HHHHHHHHHHHHh--cC-eEEecc--chhhhhhhhh----------
Confidence 577887644 4478876421101111 22 2688999999987 66 777763 2222111110
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHH
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAH 228 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h 228 (520)
...++++.... .|.-.++..+... ...+.++++++|+ +...++..+++..
T Consensus 62 -~~g~~vl~d~~--------~gLN~Al~~a~~~---~~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 62 -RLGAEVLPDPG--------RGLNAALNAALAA---AGDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp ---SSEEEE-----------S-HHHHHHHHHH----H--S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred -ccCCeEecCCC--------CCHHHHHHHHHhc---cCCCceEEeecCCccCCHHHHHHHHhcc
Confidence 01144554321 4556777777322 2357899999999 4456788888764
No 297
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=59.18 E-value=1.3e+02 Score=27.56 Aligned_cols=102 Identities=9% Similarity=-0.029 Sum_probs=49.4
Q ss_pred eecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
+|+.+.-+-|...|+.+.+.- --+|+||.....+...+.+.+... .+....+.++.... +.. ..+.+.+
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~-----~~~~~~~~~~~~~~---~~g-~~~~~~~ 77 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIA-----KYPNVDARLLIGGE---KVG-INPKVNN 77 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHH-----HCCCCcEEEEecCC---cCC-CCHhHHH
Confidence 454433356777777776532 246777765444332233322100 00111133332211 100 0122344
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHH
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH 228 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h 228 (520)
+..++... ..+.++++.+|...+.+ +..+++..
T Consensus 78 ~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 78 LIKGYEEA---RYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHhC---CCCEEEEECCCceEChhHHHHHHHHh
Confidence 54455433 34788899999987776 77777654
No 298
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=58.05 E-value=1.6e+02 Score=31.45 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=54.6
Q ss_pred chhHHHHHHhHhCCC--C--eEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHH
Q 010006 122 RLIDIPVSNCLNSNI--S--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (520)
Q Consensus 122 plI~~~l~~l~~~gi--~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~ 197 (520)
..|...++.+.+... + +|+|+-+...+...+.+.+... .. ..+.+.... .+ .|-+.++..++
T Consensus 62 ~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~-----~~--~~v~v~~~~---~~----~Gka~AlN~gl 127 (439)
T TIGR03111 62 DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQN-----EF--PGLSLRYMN---SD----QGKAKALNAAI 127 (439)
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHH-----hC--CCeEEEEeC---CC----CCHHHHHHHHH
Confidence 567777777766432 2 4666655444444333332111 00 112232211 11 67888998888
Q ss_pred HHhhhcCcceEEEEeCceecccc-HHHHHHHHHhc
Q 010006 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (520)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (520)
.... .+.++++.+|.+.+.| +..+++.+.+.
T Consensus 128 ~~s~---g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 128 YNSI---GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred HHcc---CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 6544 4788999999988877 78888877543
No 299
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=56.23 E-value=1.8e+02 Score=27.46 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=59.9
Q ss_pred chhHHHHHHh-HhCCCC-eEEEEecc--C-hhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHH
Q 010006 122 RLIDIPVSNC-LNSNIS-KIYVLTQF--N-SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQY 196 (520)
Q Consensus 122 plI~~~l~~l-~~~gi~-~I~Iv~~~--~-~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~ 196 (520)
|++-|.+... .+.|.+ +|+||=.. + ..+..+.|++-|.. ..+.+..... .+|.+.|...+
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~--------d~i~l~pR~~-------klGLgtAy~hg 83 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE--------DNILLKPRTK-------KLGLGTAYIHG 83 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC--------CcEEEEeccC-------cccchHHHHhh
Confidence 4555555554 345654 45444321 1 13455666664432 2243443221 27888888888
Q ss_pred HHHhhhcCcceEEEEeCceeccc-cHHHHHHHHHhcCCcEEEEEEe
Q 010006 197 LWLFEEHNVLEFLVLAGDHLYRM-DYERFIQAHRETDADITVAALP 241 (520)
Q Consensus 197 ~~~l~~~~~~~~Lvl~gD~l~~~-dl~~ll~~h~~~~a~~tl~~~~ 241 (520)
+.+... +.++++.+|.-..+ -+.+|++..++.+.|+++.+..
T Consensus 84 l~~a~g---~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRY 126 (238)
T KOG2978|consen 84 LKHATG---DFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRY 126 (238)
T ss_pred hhhccC---CeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence 876653 56678888875544 3888998887777788776644
No 300
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=55.03 E-value=1.2e+02 Score=27.04 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=54.4
Q ss_pred eecCCccchhHHHHHHhHhC--CCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~--gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
+|..+.-..|..+|+.+.+. ...+|+|+-....+...+.+.+... ......+.+... +. ..|.+.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~-----~~~~~~~~~~~~-----~~--~~~~~~~ 70 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKS-----QFPIPIKHVWQE-----DE--GFRKAKI 70 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHh-----hcCCceEEEEcC-----Cc--chhHHHH
Confidence 45544435788888888763 2357777765555544444443111 001111222211 11 1345556
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHH
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH 228 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h 228 (520)
+..+..... .+.++++.+|.+...+ +..+++.+
T Consensus 71 ~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 71 RNKAIAAAK---GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHhc---CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 666665443 4789999999987776 67777655
No 301
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.57 E-value=1.5e+02 Score=27.02 Aligned_cols=101 Identities=10% Similarity=0.086 Sum_probs=54.9
Q ss_pred ceecCCccchhHHHHHHhHhCCC--CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 114 AVPLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
++|.-+....|...|+.+.+... -+|+|+-....+...+.+.+... ..+ ..+.++... .+ .|.+.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~-----~~~-~~~~~~~~~---~~----~G~~~ 69 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYID-----KDP-FIIILIRNG---KN----LGVAR 69 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHh-----cCC-ceEEEEeCC---CC----ccHHH
Confidence 35554443578888888876432 35666654333333333333110 001 112222211 12 57777
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
++..++...+ .+.++++..|..+..+ +..+++...+
T Consensus 70 ~~n~g~~~~~---g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 70 NFESLLQAAD---GDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred HHHHHHHhCC---CCEEEEECCCcccChhHHHHHHHHHhc
Confidence 7777754433 5788899999877766 8888877333
No 302
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=52.47 E-value=1.7e+02 Score=29.82 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=34.7
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADIT 236 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~t 236 (520)
.|.+.|+..++.... .|.++++.+|.-.+.+ +.++++... .+.|++
T Consensus 76 ~G~~~A~~~G~~~A~---gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHVT---GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhCC---CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 678889988876554 4789999999977754 888888764 456654
No 303
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.11 E-value=1.6e+02 Score=27.30 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=54.5
Q ss_pred ceecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
++|+.+..+.|...|+.+.+.- ..+|+||-+...+...+.+.+ . . +.++. .+ .|-+.
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~----------~-~~~~~-----~~----~g~~~ 62 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A----------G-VVVIS-----SP----KGRAR 62 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C----------C-eEEEe-----CC----cCHHH
Confidence 3555544457788888877642 356766654443444444433 1 1 22221 11 45666
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcC
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (520)
+...++.... .+.++++..|..+..+ +..++......+
T Consensus 63 a~n~g~~~a~---~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 63 QMNAGAAAAR---GDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHhcc---CCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 6666665544 4789999999977766 666655554433
No 304
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=51.90 E-value=1.2e+02 Score=31.63 Aligned_cols=94 Identities=6% Similarity=0.020 Sum_probs=49.5
Q ss_pred chhHHHHHHhHhCCC--CeEEEEeccChh---HHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHH
Q 010006 122 RLIDIPVSNCLNSNI--SKIYVLTQFNSA---SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQY 196 (520)
Q Consensus 122 plI~~~l~~l~~~gi--~~I~Iv~~~~~~---~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~ 196 (520)
+.|...|+.+.+..- -+|+++.....+ ++.+.+.+.++ +..+.++... .+..| .+...++.++
T Consensus 54 ~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p--------~~~i~~v~~~---~~~G~-~~K~~~l~~~ 121 (373)
T TIGR03472 54 PELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFP--------DADIDLVIDA---RRHGP-NRKVSNLINM 121 (373)
T ss_pred hhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCC--------CCceEEEECC---CCCCC-ChHHHHHHHH
Confidence 566677777765432 466665543333 23333333221 1124444221 12112 3344555554
Q ss_pred HHHhhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 197 LWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 197 ~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
+... ..|.++++.+|.....+ +..+++....
T Consensus 122 ~~~a---~ge~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 122 LPHA---RHDILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred HHhc---cCCEEEEECCCCCcChhHHHHHHHHhcC
Confidence 4332 35889999999988877 7777776643
No 305
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=51.77 E-value=32 Score=28.49 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=9.4
Q ss_pred eeeCCCCEEcceEECCCCEE
Q 010006 458 IGIGKNSHIKRAIIDKNARI 477 (520)
Q Consensus 458 ~~Ig~~~~i~~~ii~~~~~I 477 (520)
+.|+.++.++..+-.+++.|
T Consensus 37 v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 37 VKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEcCCCEEEEEEEEeEEEE
Confidence 34555555554444444444
No 306
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=51.56 E-value=2.1e+02 Score=26.69 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=57.6
Q ss_pred eecCCcc-chhHHHHHHhHhCCCC----eEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCc
Q 010006 115 VPLGANY-RLIDIPVSNCLNSNIS----KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (520)
Q Consensus 115 lpv~G~~-plI~~~l~~l~~~gi~----~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt 189 (520)
+|..+.. .+|...|+.+.+.... +|+||-....+...+.+.+... .. .+.++... .+. .+.
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-----~~---~~~~~~~~---~~~---~~~ 72 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGV-----EY---GYRYLTRP---DNR---HAK 72 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhc-----cc---CceEEEeC---CCC---CCc
Confidence 4544331 3678888888775432 6777766555665555554211 00 12233221 111 234
Q ss_pred HHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 190 ADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 190 ~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
++++..++.... .+.++++..|.+.+.+ +..+++...+
T Consensus 73 ~~~~n~~~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 73 AGNLNNALAHTT---GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred HHHHHHHHHhCC---CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 566666665443 5789999999988877 7777776654
No 307
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=50.50 E-value=28 Score=32.79 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=52.0
Q ss_pred ceecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHH---HHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccC
Q 010006 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASL---NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQG 188 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i---~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~G 188 (520)
++|..+..+.|...|+.+.... --+|+|+.....+.. .+.+...++ ...+.++.... +. ...+
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~--------~~~v~vi~~~~---~~-g~~~ 73 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYP--------RVRVRVIRRPR---NP-GPGG 73 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTG--------G-GEEEEE-------H-HHHH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcC--------CCceEEeecCC---CC-Ccch
Confidence 3555544467888888887632 245666665443332 223333222 11244543321 10 0023
Q ss_pred cHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCc
Q 010006 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDAD 234 (520)
Q Consensus 189 t~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~ 234 (520)
.+.++..++.... .+.++++..|.+...+ +..+++.+...+..
T Consensus 74 k~~a~n~~~~~~~---~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 74 KARALNEALAAAR---GDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp HHHHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred HHHHHHHHHHhcC---CCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 4566777766554 5899999999988777 78888877333333
No 308
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=49.10 E-value=2e+02 Score=26.76 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=55.3
Q ss_pred eecCCccchhHHHHHHhHhCCC---CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSNI---SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~gi---~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
+|.-+.-..|...|+.+.+... -+|+||-....+...+.+.+ +... .....+.++.... +..+..|.+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~-~~~~----~~~~~~~~~~~~~---~~~~~~G~~~ 74 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEK-WRKK----LEDSGVIVLVGSH---NSPSPKGVGY 74 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHH-HHHh----CcccCeEEEEecc---cCCCCccHHH
Confidence 4544333678888888876432 36767655433322222222 1000 0011122221111 1111257777
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcC
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (520)
+...++.... .+.++++.+|.+...+ +..++....+..
T Consensus 75 a~N~g~~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 75 AKNQAIAQSS---GRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred HHHHHHHhcC---CCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 7766664433 4789999999877665 777777665544
No 309
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=46.92 E-value=27 Score=41.04 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=11.1
Q ss_pred eeeEEEEeHH---HHHHHHh
Q 010006 298 SMGIYVISKD---VMLNLLR 314 (520)
Q Consensus 298 ~~GIyifs~~---vl~~ll~ 314 (520)
.=|+|+.+++ .++.+|.
T Consensus 192 ~HGVfv~~~~~~~~~~~~Lq 211 (974)
T PRK13412 192 NHGVFVSSRKSPERLDFMLQ 211 (974)
T ss_pred CceEEEeCCCChHHHHHHhc
Confidence 4488888865 5555554
No 310
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=46.29 E-value=2.4e+02 Score=25.84 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=57.2
Q ss_pred eecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV 193 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al 193 (520)
+|.-.....|..+|+.+.+.. --+|+||-....+...+.+.... ....+.++.... .+ ...|-+.++
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~--------~~~~v~~i~~~~--~~--~~~Gk~~al 70 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAI--------TDSRVHLLRRHL--PN--ARTGKGDAL 70 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhhee--------cCCcEEEEeccC--Cc--CCCCHHHHH
Confidence 455444467888888887753 23566666544444444443100 011144443211 01 125788899
Q ss_pred HHHHHHhhhc--------CcceEEEEeCceecccc-HHHHHHHH
Q 010006 194 RQYLWLFEEH--------NVLEFLVLAGDHLYRMD-YERFIQAH 228 (520)
Q Consensus 194 ~~~~~~l~~~--------~~~~~Lvl~gD~l~~~d-l~~ll~~h 228 (520)
..++..+... ..+.++++.+|.....+ +..+.+..
T Consensus 71 n~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 71 NAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred HHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 8888765421 12568899999988877 66654443
No 311
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=44.34 E-value=2.6e+02 Score=26.22 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=56.1
Q ss_pred ceecCCccc-hhHHHHHHhHhCCC--CeEEEEeccChh-HH----HHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCC
Q 010006 114 AVPLGANYR-LIDIPVSNCLNSNI--SKIYVLTQFNSA-SL----NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNW 185 (520)
Q Consensus 114 Llpv~G~~p-lI~~~l~~l~~~gi--~~I~Iv~~~~~~-~i----~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~ 185 (520)
++|.-+..+ +|...++.+.+... -+|+||-+...+ .. .+++.+ ++ ..+.++... .+
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-~~---------~~i~~i~~~---~~--- 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-LG---------ERFRFFHVE---PL--- 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-hC---------CcEEEEEcC---CC---
Confidence 356654433 78888888887543 467666653322 22 233322 11 113333221 11
Q ss_pred ccC-cHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHH
Q 010006 186 FQG-TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (520)
Q Consensus 186 ~~G-t~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (520)
.| .++++..++..... ..+.++++..|.....+ +..++....
T Consensus 67 -~G~~~~a~n~g~~~a~~-~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 -PGAKAGALNYALERTAP-DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred -CCCchHHHHHHHHhcCC-CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 34 36778777765532 24789999999987777 888887764
No 312
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=43.40 E-value=2.4e+02 Score=28.19 Aligned_cols=102 Identities=15% Similarity=0.070 Sum_probs=59.2
Q ss_pred chhHHHHHHhHhCCCCeEEE--EeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHH
Q 010006 122 RLIDIPVSNCLNSNISKIYV--LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (520)
Q Consensus 122 plI~~~l~~l~~~gi~~I~I--v~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~ 199 (520)
..+...++.+.+.......+ +-+...+...+.+.... ...+.++... +| +|-+++...+...
T Consensus 16 ~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~---------~~~v~~i~~~---~N----lG~agg~n~g~~~ 79 (305)
T COG1216 16 EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF---------FPNVRLIENG---EN----LGFAGGFNRGIKY 79 (305)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc---------CCcEEEEEcC---CC----ccchhhhhHHHHH
Confidence 56677777777755433323 34444444445555421 0114444322 33 6777777666544
Q ss_pred hhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEE
Q 010006 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (520)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~ 239 (520)
......+.+++++-|+....+ +.++++.+.+.+..+.+..
T Consensus 80 a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~ 120 (305)
T COG1216 80 ALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGP 120 (305)
T ss_pred HhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeee
Confidence 433222369999999887766 9999999887766544433
No 313
>PRK10018 putative glycosyl transferase; Provisional
Probab=40.95 E-value=3.8e+02 Score=26.69 Aligned_cols=90 Identities=12% Similarity=0.203 Sum_probs=52.6
Q ss_pred chhHHHHHHhHhCCCC--eEEEEeccCh--hHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHH
Q 010006 122 RLIDIPVSNCLNSNIS--KIYVLTQFNS--ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (520)
Q Consensus 122 plI~~~l~~l~~~gi~--~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~ 197 (520)
..|..+|+.+.+.... +|+||-.... +.+.+++.+ + .+..+.++... .+ .|.+.+.-.++
T Consensus 18 ~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~-~--------~~~ri~~i~~~---~n----~G~~~a~N~gi 81 (279)
T PRK10018 18 QLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTA-L--------NDPRITYIHND---IN----SGACAVRNQAI 81 (279)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHH-c--------CCCCEEEEECC---CC----CCHHHHHHHHH
Confidence 5677788877664433 5665543222 233444333 1 11224444321 12 67777777777
Q ss_pred HHhhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
.... .+.++++.+|.+...+ +..+++...+
T Consensus 82 ~~a~---g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 82 MLAQ---GEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHcC---CCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 6544 4789999999977766 7777776544
No 314
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=40.09 E-value=3e+02 Score=27.81 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=35.1
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCcee-cccc-HHHHHHHHH-hcCCcEEEEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMD-YERFIQAHR-ETDADITVAA 239 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~d-l~~ll~~h~-~~~a~~tl~~ 239 (520)
.|.+.++..++.... .+.++++.+|.. .+.+ +..+++... ..+.+++...
T Consensus 101 ~Gkg~A~~~g~~~a~---gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAATT---GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhcC---CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 678888888775443 478999999996 6655 888888765 3445555443
No 315
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=40.07 E-value=2.1e+02 Score=29.88 Aligned_cols=211 Identities=12% Similarity=0.064 Sum_probs=108.5
Q ss_pred c-hhHHHHHHhHhCCCC--eEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHH
Q 010006 122 R-LIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (520)
Q Consensus 122 p-lI~~~l~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~ 198 (520)
+ .++.+++.+.+.... +|++|.....+...+.+.+.... .. ..+.+... . .. ..|.+.++..++.
T Consensus 67 ~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~-----~~-~~~~~~~~--~-~~---~~gK~~al~~~l~ 134 (439)
T COG1215 67 PEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAE-----YG-PNFRVIYP--E-KK---NGGKAGALNNGLK 134 (439)
T ss_pred hhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhh-----cC-cceEEEec--c-cc---CccchHHHHHHHh
Confidence 5 899999999887643 78888765666666666653221 10 11223211 0 11 2677889988886
Q ss_pred HhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcc
Q 010006 199 LFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMK 277 (520)
Q Consensus 199 ~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~ 277 (520)
... .|-++++.+|.....| +.+++..+...... .+...+...... +. ..--+++..+..........
T Consensus 135 ~~~---~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~-~v~~~~~~~~~~--~~---~~~l~~~~~~~~~~~~~~~~--- 202 (439)
T COG1215 135 RAK---GDVVVILDADTVPEPDALRELVSPFEDPPVG-AVVGTPRIRNRP--DP---SNLLGRIQAIEYLSAFYFRL--- 202 (439)
T ss_pred hcC---CCEEEEEcCCCCCChhHHHHHHhhhcCCCee-EEeCCceeeecC--Ch---hhhcchhcchhhhhhHHHhh---
Confidence 654 4788999999988877 88888877654333 122221100000 00 00001222221111100000
Q ss_pred cccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccc-h-HhhhhCCceEEEEEecceE-EeCCCHH
Q 010006 278 VDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV-I-PGATSIGMRVQAYLYDGYW-EDIGTIE 354 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~di-l-~~li~~~~~v~a~~~~g~w-~dI~t~~ 354 (520)
................+.|+++.|.+.-.. ......+|. + -.+...|.++...+-.-.| ....|..
T Consensus 203 --------~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~---~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~ 271 (439)
T COG1215 203 --------RAASKGGLISFLSGSSSAFRRSALEEVGGW---LEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLK 271 (439)
T ss_pred --------hhhhhcCCeEEEcceeeeEEHHHHHHhCCC---CCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHH
Confidence 000000113466778889999998865311 111121222 1 2333457777766554234 4455777
Q ss_pred HHHHhhhhcccCC
Q 010006 355 AFYNANLGITKKP 367 (520)
Q Consensus 355 dy~~An~~~l~~~ 367 (520)
+++.-...+....
T Consensus 272 ~~~~Qr~RW~~g~ 284 (439)
T COG1215 272 ELWRQRLRWARGG 284 (439)
T ss_pred HHHHHHHHHHccc
Confidence 8877777665543
No 316
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=38.99 E-value=2.4e+02 Score=33.02 Aligned_cols=96 Identities=9% Similarity=0.107 Sum_probs=57.8
Q ss_pred hhHHHHHHhHhCCC----CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHH
Q 010006 123 LIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (520)
Q Consensus 123 lI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~ 198 (520)
++..++..+.+..- -+|+|+-....++..+..++ . + +.++... ++. .|.++++..++.
T Consensus 275 vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~-~--------~---v~yI~R~---~n~---~gKAGnLN~aL~ 336 (852)
T PRK11498 275 VVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE-V--------G---VKYIARP---THE---HAKAGNINNALK 336 (852)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH-C--------C---cEEEEeC---CCC---cchHHHHHHHHH
Confidence 56667777654321 26777766556666655544 1 1 2333211 121 467888888887
Q ss_pred HhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEEE
Q 010006 199 LFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAAL 240 (520)
Q Consensus 199 ~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~ 240 (520)
..+ .|.++++.+|++...| ++.++..+.+. ..+.++..
T Consensus 337 ~a~---GEyIavlDAD~ip~pdfL~~~V~~f~~d-P~VglVQt 375 (852)
T PRK11498 337 YAK---GEFVAIFDCDHVPTRSFLQMTMGWFLKD-KKLAMMQT 375 (852)
T ss_pred hCC---CCEEEEECCCCCCChHHHHHHHHHHHhC-CCeEEEEc
Confidence 654 4889999999988877 67777665443 34444433
No 317
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=38.93 E-value=3.4e+02 Score=25.62 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=54.6
Q ss_pred eecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVR 194 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~ 194 (520)
+|.-+.-..|...|+.+... ..+|+||-+...+...+.+.+ ++ +.++.. +..|-+.+..
T Consensus 6 i~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~-~~-----------~~v~~~--------~~~g~~~~~n 64 (229)
T cd02511 6 IITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE-YG-----------AKVYQR--------WWDGFGAQRN 64 (229)
T ss_pred EEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH-cC-----------CEEEEC--------CCCChHHHHH
Confidence 44433335677888877654 368888876544444444332 11 223321 1257777777
Q ss_pred HHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHh
Q 010006 195 QYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (520)
Q Consensus 195 ~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (520)
.++.... .+.++++.+|.+...+ +..+.+...+
T Consensus 65 ~~~~~a~---~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 65 FALELAT---NDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred HHHHhCC---CCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 7766544 4789999999988777 5555554443
No 318
>PRK10063 putative glycosyl transferase; Provisional
Probab=28.44 E-value=5.5e+02 Score=24.83 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred chhHHHHHHhHh----CCC-CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHH
Q 010006 122 RLIDIPVSNCLN----SNI-SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQY 196 (520)
Q Consensus 122 plI~~~l~~l~~----~gi-~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~ 196 (520)
..|..+|+.+.+ .+. -+|+|+=+...+...+.+.+. . ....+.++.. .+ .|.++++..+
T Consensus 14 ~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~-~-------~~~~i~~i~~----~~----~G~~~A~N~G 77 (248)
T PRK10063 14 EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENL-N-------GIFNLRFVSE----PD----NGIYDAMNKG 77 (248)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHh-c-------ccCCEEEEEC----CC----CCHHHHHHHH
Confidence 467777777753 222 356666443344444444441 1 0011344421 11 5888888888
Q ss_pred HHHhhhcCcceEEEEeCceeccccHHHHHHHHHhc
Q 010006 197 LWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRET 231 (520)
Q Consensus 197 ~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~ 231 (520)
+.... .+.++++.+|-+...+..+++......
T Consensus 78 i~~a~---g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 78 IAMAQ---GRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred HHHcC---CCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 87654 478889998776666644455444333
No 319
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.36 E-value=1.6e+02 Score=30.82 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHhHhCC-CCeEEEEeccCh--hHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc
Q 010006 127 PVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH 203 (520)
Q Consensus 127 ~l~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~ 203 (520)
++..|.+.+ +.-++++|+-+. +.+..++.. + +..+.+....+-...|+.. .-|+..+...-..+++
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~-~----~i~~pdy~L~i~~~~~tl~-----~~t~~~i~~~~~vl~~- 90 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLEL-F----GIRKPDYDLNIMKPGQTLG-----EITGNIIEGLSKVLEE- 90 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHH-h----CCCCCCcchhccccCCCHH-----HHHHHHHHHHHHHHHh-
Confidence 345666655 899999998665 555555555 2 2222333333332222100 1133333333344443
Q ss_pred CcceEEEEeCceecc
Q 010006 204 NVLEFLVLAGDHLYR 218 (520)
Q Consensus 204 ~~~~~Lvl~gD~l~~ 218 (520)
..-|++++.||.-..
T Consensus 91 ~kPD~VlVhGDT~t~ 105 (383)
T COG0381 91 EKPDLVLVHGDTNTT 105 (383)
T ss_pred hCCCEEEEeCCcchH
Confidence 235699999997543
No 320
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=25.72 E-value=2.4e+02 Score=25.38 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCC
Q 010006 419 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDG 498 (520)
Q Consensus 419 g~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~ 498 (520)
...+.|+.+++++..+.+...++=...=...+..++. +.|++...|...+.. +..+=.+.+..| ....+..++..+
T Consensus 21 ~~~tli~~g~~f~G~l~f~~~l~IdG~~~G~v~s~~~--iiv~~~g~V~gei~a-~~~iv~G~v~Gn-i~~a~~Vei~~~ 96 (146)
T COG1664 21 KPETLIGAGTTFKGELVFEGPLRIDGTFEGDVHSDGG--IVVGESGRVEGEIEA-EHLIVEGKVEGN-ILAAERVELYPG 96 (146)
T ss_pred CCCeEEecCCEEEEEEEecceEEEeEEEEEEEEeCCC--EEECCccEEEEEEEe-CEEEEeeEEEEE-EEEeeEEEEcCC
Q ss_pred eEEccCe----EEEcCCCEe
Q 010006 499 YFIKSGI----VTIIKDALI 514 (520)
Q Consensus 499 ~~I~~~~----v~Ig~~~~i 514 (520)
+.+...+ ++|-+++++
T Consensus 97 g~v~GdI~~~~i~v~~Ga~f 116 (146)
T COG1664 97 GRVIGDITTKEITVEEGAIF 116 (146)
T ss_pred cEEeeeecccEEEEccCCEE
No 321
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.31 E-value=5.9e+02 Score=24.80 Aligned_cols=123 Identities=13% Similarity=0.149 Sum_probs=62.7
Q ss_pred ceEEEEEeCCCCCCCCc---cccC--CCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh---HHHHHHHHhhhc
Q 010006 89 SVLGIILGGGAGTRLYP---LTKK--RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA---SLNRHLSRAYAS 160 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~P---lT~~--~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~---~i~~~l~~~~~~ 160 (520)
.+-+|+.+.-.|+=..- +... ..++-+|+- .-..-.++.|...|+++|.|++.|..+ .+.+|+.+.
T Consensus 71 ~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~t---t~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~--- 144 (239)
T TIGR02990 71 ELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVV---TPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVR--- 144 (239)
T ss_pred CCCEEEEccchhheecCHHHHHHHHHhcCCCCCee---CHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhC---
Confidence 45677777766654321 1011 112224442 345677888899999999999987652 344455441
Q ss_pred cCCCCcCCCeEEEeecccC--CCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHH
Q 010006 161 NMGGYKNEGFVEVLAAQQS--PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 227 (520)
Q Consensus 161 ~~~~~~~~~~v~vl~~~~~--~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~ 227 (520)
+ +++...... ..+.+-..=+.+.+..+...+.. .+-|-++++|-.+-..++-+-++.
T Consensus 145 --------G-~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aDAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 145 --------G-FEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDADALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred --------C-cEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCCEEEEeCCCchhHHHHHHHHH
Confidence 1 233222110 01111011234566655544432 345667777877766664444443
No 322
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=23.87 E-value=6.3e+02 Score=28.93 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=34.0
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~ 238 (520)
.+.++++..++...+ .|.++++.+|++...| +.+++..+.+. ..+.++
T Consensus 214 ~~KAgnLN~al~~a~---gd~Il~lDAD~v~~pd~L~~~v~~f~~d-p~v~~V 262 (713)
T TIGR03030 214 HAKAGNINNALKHTD---GELILIFDADHVPTRDFLQRTVGWFVED-PKLFLV 262 (713)
T ss_pred CCChHHHHHHHHhcC---CCEEEEECCCCCcChhHHHHHHHHHHhC-CCEEEE
Confidence 456788888876554 4899999999988877 77777766443 344333
Done!