Query 010008
Match_columns 520
No_of_seqs 409 out of 3446
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 17:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ou5_A Serine hydroxymethyltra 100.0 2E-109 8E-114 851.4 37.9 448 70-520 31-487 (490)
2 2a7v_A Serine hydroxymethyltra 100.0 1.5E-76 5.2E-81 632.9 36.9 447 71-520 32-487 (490)
3 1rv3_A Serine hydroxymethyltra 100.0 4.9E-68 1.7E-72 569.5 40.9 452 68-520 19-480 (483)
4 3h7f_A Serine hydroxymethyltra 100.0 7.6E-54 2.6E-58 455.0 37.0 408 71-518 23-436 (447)
5 3n0l_A Serine hydroxymethyltra 100.0 6.3E-50 2.2E-54 418.7 40.7 409 72-519 4-413 (417)
6 3gbx_A Serine hydroxymethyltra 100.0 1.9E-47 6.6E-52 399.9 37.2 409 74-519 11-420 (420)
7 3ecd_A Serine hydroxymethyltra 100.0 1.4E-46 4.8E-51 394.0 38.1 417 69-518 8-425 (425)
8 2dkj_A Serine hydroxymethyltra 100.0 2.2E-41 7.4E-46 352.8 37.3 402 75-518 5-407 (407)
9 2vi8_A Serine hydroxymethyltra 100.0 7.7E-41 2.6E-45 348.5 37.0 401 73-512 3-404 (405)
10 3zrp_A Serine-pyruvate aminotr 100.0 4.6E-28 1.6E-32 249.4 27.6 330 96-471 4-363 (384)
11 1iug_A Putative aspartate amin 100.0 5.3E-28 1.8E-32 246.2 26.3 324 96-470 3-347 (352)
12 3nnk_A Ureidoglycine-glyoxylat 100.0 1.9E-27 6.5E-32 247.5 31.0 334 95-470 14-389 (411)
13 3isl_A Purine catabolism prote 100.0 2.3E-27 7.8E-32 247.3 30.5 335 95-470 12-389 (416)
14 2dr1_A PH1308 protein, 386AA l 100.0 3.9E-27 1.3E-31 242.8 30.6 326 99-470 25-378 (386)
15 2huf_A Alanine glyoxylate amin 100.0 3.8E-27 1.3E-31 244.0 30.5 334 95-470 20-382 (393)
16 1kmj_A Selenocysteine lyase; p 100.0 5.1E-27 1.7E-31 243.4 30.7 342 95-469 24-403 (406)
17 3f0h_A Aminotransferase; RER07 100.0 2.3E-27 8E-32 244.0 27.0 332 93-469 18-372 (376)
18 4hvk_A Probable cysteine desul 100.0 1.6E-27 5.4E-32 244.7 25.5 335 101-471 8-373 (382)
19 3tqx_A 2-amino-3-ketobutyrate 100.0 2.4E-27 8.3E-32 245.7 26.3 335 94-470 44-395 (399)
20 1t3i_A Probable cysteine desul 100.0 5.1E-27 1.7E-31 244.7 28.3 345 95-470 29-412 (420)
21 3kgw_A Alanine-glyoxylate amin 100.0 5.3E-27 1.8E-31 242.2 28.2 335 95-470 24-387 (393)
22 2yrr_A Aminotransferase, class 100.0 3.2E-27 1.1E-31 240.1 25.2 326 96-469 2-351 (353)
23 3cai_A Possible aminotransfera 100.0 6.6E-27 2.3E-31 243.4 27.9 340 95-466 27-404 (406)
24 3ly1_A Putative histidinol-pho 100.0 2.6E-26 9E-31 234.4 30.4 318 94-469 17-350 (354)
25 3f9t_A TDC, L-tyrosine decarbo 100.0 5.1E-26 1.7E-30 234.7 32.8 328 98-469 35-396 (397)
26 1vjo_A Alanine--glyoxylate ami 100.0 1.7E-26 5.9E-31 239.2 29.3 329 96-468 36-392 (393)
27 1m32_A 2-aminoethylphosphonate 100.0 1.2E-26 4.2E-31 236.9 27.7 331 95-469 5-363 (366)
28 1gd9_A Aspartate aminotransfer 100.0 1.3E-26 4.5E-31 239.9 27.4 358 74-470 7-385 (389)
29 2z9v_A Aspartate aminotransfer 100.0 9.9E-27 3.4E-31 240.7 26.4 330 96-470 10-370 (392)
30 2ch1_A 3-hydroxykynurenine tra 100.0 2.5E-26 8.4E-31 238.1 28.9 331 96-470 20-382 (396)
31 1b5p_A Protein (aspartate amin 100.0 1.4E-26 4.7E-31 240.0 26.9 331 94-468 32-382 (385)
32 1elu_A L-cysteine/L-cystine C- 100.0 5.7E-27 1.9E-31 242.0 23.6 337 94-466 16-387 (390)
33 3dzz_A Putative pyridoxal 5'-p 100.0 6.7E-27 2.3E-31 241.7 24.1 337 94-470 28-388 (391)
34 1eg5_A Aminotransferase; PLP-d 100.0 5.3E-26 1.8E-30 234.0 30.6 342 96-470 3-375 (384)
35 4eb5_A Probable cysteine desul 100.0 2.1E-26 7.3E-31 237.0 27.6 331 103-471 10-373 (382)
36 3hbx_A GAD 1, glutamate decarb 99.9 1.2E-25 4.2E-30 241.6 33.5 340 103-471 66-444 (502)
37 3lvm_A Cysteine desulfurase; s 99.9 3.8E-26 1.3E-30 239.0 28.8 348 92-472 20-400 (423)
38 1fc4_A 2-amino-3-ketobutyrate 99.9 2E-26 6.8E-31 239.6 26.3 334 94-470 46-396 (401)
39 4dq6_A Putative pyridoxal phos 99.9 2.2E-26 7.6E-31 237.8 26.2 334 93-468 32-390 (391)
40 3h14_A Aminotransferase, class 99.9 3.3E-26 1.1E-30 237.2 27.3 336 93-471 31-382 (391)
41 3euc_A Histidinol-phosphate am 99.9 5.7E-26 1.9E-30 233.3 28.7 320 94-468 31-365 (367)
42 3get_A Histidinol-phosphate am 99.9 4.9E-26 1.7E-30 233.6 28.0 319 93-468 30-364 (365)
43 2w8t_A SPT, serine palmitoyltr 99.9 9.3E-26 3.2E-30 237.3 30.8 334 95-470 66-414 (427)
44 3ffh_A Histidinol-phosphate am 99.9 1.3E-25 4.6E-30 230.1 30.7 315 94-467 33-362 (363)
45 2bkw_A Alanine-glyoxylate amin 99.9 3.6E-26 1.2E-30 235.5 24.4 331 94-469 5-382 (385)
46 1j32_A Aspartate aminotransfer 99.9 1.6E-25 5.3E-30 231.8 28.9 336 93-469 30-385 (388)
47 1bs0_A Protein (8-amino-7-oxon 99.9 5.6E-26 1.9E-30 234.8 25.4 332 94-467 40-383 (384)
48 3kax_A Aminotransferase, class 99.9 5.5E-26 1.9E-30 234.2 25.1 334 94-468 25-382 (383)
49 3p1t_A Putative histidinol-pho 99.9 2.8E-25 9.5E-30 225.1 29.4 315 90-468 13-334 (337)
50 3fvs_A Kynurenine--oxoglutarat 99.9 8.8E-26 3E-30 236.2 26.6 365 71-469 7-420 (422)
51 1v2d_A Glutamine aminotransfer 99.9 7.8E-26 2.7E-30 233.6 25.7 349 73-471 6-371 (381)
52 2dou_A Probable N-succinyldiam 99.9 6.4E-26 2.2E-30 233.8 24.7 335 94-468 26-375 (376)
53 1o4s_A Aspartate aminotransfer 99.9 2.7E-25 9.2E-30 230.6 29.3 327 94-469 42-387 (389)
54 1c7n_A Cystalysin; transferase 99.9 1.2E-25 4.2E-30 233.4 26.0 337 94-470 32-392 (399)
55 3vax_A Putative uncharacterize 99.9 6.2E-27 2.1E-31 242.9 16.1 342 94-469 20-398 (400)
56 3g0t_A Putative aminotransfera 99.9 4.1E-25 1.4E-29 232.3 29.7 341 93-469 44-435 (437)
57 2x5d_A Probable aminotransfera 99.9 1.3E-25 4.4E-30 234.7 25.7 336 94-470 38-397 (412)
58 3kki_A CAI-1 autoinducer synth 99.9 3.2E-25 1.1E-29 231.5 28.7 321 105-470 74-403 (409)
59 3ffr_A Phosphoserine aminotran 99.9 1.5E-25 5.3E-30 228.6 25.2 330 94-468 4-361 (362)
60 3nra_A Aspartate aminotransfer 99.9 8.1E-26 2.8E-30 235.0 23.1 339 95-470 41-404 (407)
61 1u08_A Hypothetical aminotrans 99.9 4.9E-25 1.7E-29 228.0 28.6 352 75-465 13-384 (386)
62 3l8a_A METC, putative aminotra 99.9 1E-25 3.4E-30 236.4 23.1 337 93-469 61-420 (421)
63 3mc6_A Sphingosine-1-phosphate 99.9 1.1E-25 3.8E-30 241.3 23.9 327 106-471 77-437 (497)
64 3hvy_A Cystathionine beta-lyas 99.9 2.9E-25 9.8E-30 233.3 25.9 282 76-391 15-325 (427)
65 3ele_A Amino transferase; RER0 99.9 1.5E-24 5E-29 225.2 31.0 334 94-470 36-395 (398)
66 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 1.9E-26 6.6E-31 236.6 16.6 332 94-469 8-368 (371)
67 3a2b_A Serine palmitoyltransfe 99.9 3.9E-25 1.3E-29 229.7 26.4 334 94-470 44-391 (398)
68 3cq5_A Histidinol-phosphate am 99.9 4.1E-24 1.4E-28 220.0 33.7 320 96-469 33-366 (369)
69 1yiz_A Kynurenine aminotransfe 99.9 2.1E-24 7.2E-29 226.5 32.1 360 73-468 18-426 (429)
70 3dr4_A Putative perosamine syn 99.9 4.5E-26 1.5E-30 236.4 18.7 333 94-468 23-390 (391)
71 3e2y_A Kynurenine-oxoglutarate 99.9 3.9E-25 1.3E-29 230.3 25.7 341 93-466 23-408 (410)
72 3fdb_A Beta C-S lyase, putativ 99.9 2.6E-25 8.9E-30 228.8 24.0 332 93-469 23-374 (377)
73 2o0r_A RV0858C (N-succinyldiam 99.9 2.8E-25 9.5E-30 232.1 24.0 360 73-470 6-395 (411)
74 3b46_A Aminotransferase BNA3; 99.9 4.8E-25 1.6E-29 233.3 25.2 356 77-466 33-442 (447)
75 2gb3_A Aspartate aminotransfer 99.9 6.1E-25 2.1E-29 229.5 25.5 338 93-470 43-401 (409)
76 3dyd_A Tyrosine aminotransfera 99.9 1.5E-24 5.1E-29 228.1 28.4 337 94-470 55-423 (427)
77 3a9z_A Selenocysteine lyase; P 99.9 9E-25 3.1E-29 229.4 26.4 348 94-470 18-427 (432)
78 1d2f_A MALY protein; aminotran 99.9 8.6E-25 2.9E-29 226.5 25.9 335 94-469 29-387 (390)
79 2z61_A Probable aspartate amin 99.9 7.9E-25 2.7E-29 225.1 25.2 328 93-469 29-369 (370)
80 2o1b_A Aminotransferase, class 99.9 3.3E-25 1.1E-29 231.4 22.6 338 94-469 48-401 (404)
81 2dgk_A GAD-beta, GADB, glutama 99.9 6E-24 2.1E-28 225.2 32.1 339 103-471 52-434 (452)
82 1xi9_A Putative transaminase; 99.9 5.2E-25 1.8E-29 229.7 23.1 342 93-470 38-402 (406)
83 3ju7_A Putative PLP-dependent 99.9 2.5E-25 8.6E-30 230.6 19.8 321 104-470 13-374 (377)
84 3e9k_A Kynureninase; kynurenin 99.9 1.5E-25 5E-30 238.3 18.3 293 144-470 116-460 (465)
85 2c0r_A PSAT, phosphoserine ami 99.9 7.3E-25 2.5E-29 224.7 22.4 330 94-469 4-359 (362)
86 1b9h_A AHBA synthase, protein 99.9 2.1E-24 7.3E-29 223.3 25.9 321 105-469 15-386 (388)
87 3hdo_A Histidinol-phosphate am 99.9 4.1E-24 1.4E-28 219.1 27.5 313 94-469 27-353 (360)
88 2zc0_A Alanine glyoxylate tran 99.9 6.7E-24 2.3E-28 220.9 29.1 338 94-470 35-403 (407)
89 3jtx_A Aminotransferase; NP_28 99.9 2.5E-24 8.6E-29 223.1 25.3 353 74-468 6-395 (396)
90 1qz9_A Kynureninase; kynurenin 99.9 3E-24 1E-28 224.1 25.6 324 95-470 29-401 (416)
91 1jg8_A L-ALLO-threonine aldola 99.9 1.3E-24 4.4E-29 221.3 22.3 324 95-469 5-344 (347)
92 3aow_A Putative uncharacterize 99.9 8.2E-24 2.8E-28 224.1 29.2 340 93-470 76-444 (448)
93 2zyj_A Alpha-aminodipate amino 99.9 5.8E-24 2E-28 220.9 26.6 336 93-470 32-392 (397)
94 3ke3_A Putative serine-pyruvat 99.9 1.2E-24 4.1E-29 225.2 21.0 307 133-470 30-375 (379)
95 2fnu_A Aminotransferase; prote 99.9 1.8E-24 6.2E-29 222.2 22.0 323 101-470 7-371 (375)
96 1mdo_A ARNB aminotransferase; 99.9 3.9E-24 1.3E-28 221.4 24.7 330 95-471 10-386 (393)
97 3qgu_A LL-diaminopimelate amin 99.9 4.2E-24 1.4E-28 225.7 25.3 340 94-470 70-439 (449)
98 2c81_A Glutamine-2-deoxy-scyll 99.9 6.5E-24 2.2E-28 222.3 26.4 330 103-469 12-412 (418)
99 3i16_A Aluminum resistance pro 99.9 2.1E-24 7.2E-29 226.7 22.6 306 77-421 18-357 (427)
100 3rq1_A Aminotransferase class 99.9 3.3E-24 1.1E-28 224.3 24.1 349 75-470 15-414 (418)
101 3uwc_A Nucleotide-sugar aminot 99.9 5.9E-25 2E-29 226.1 18.0 326 95-470 8-370 (374)
102 2oga_A Transaminase; PLP-depen 99.9 2.8E-24 9.6E-29 223.8 22.4 328 94-469 31-394 (399)
103 2r2n_A Kynurenine/alpha-aminoa 99.9 3.7E-23 1.3E-27 217.3 30.8 303 139-469 82-422 (425)
104 1iay_A ACC synthase 2, 1-amino 99.9 9.3E-24 3.2E-28 221.7 26.1 339 94-469 37-425 (428)
105 3frk_A QDTB; aminotransferase, 99.9 2.3E-25 7.9E-30 229.6 13.1 320 103-469 13-366 (373)
106 3ezs_A Aminotransferase ASPB; 99.9 7.9E-24 2.7E-28 217.8 24.6 325 94-469 24-373 (376)
107 3piu_A 1-aminocyclopropane-1-c 99.9 1.8E-23 6.2E-28 220.1 27.7 339 94-470 39-431 (435)
108 3mad_A Sphingosine-1-phosphate 99.9 5.1E-23 1.8E-27 221.7 31.6 304 135-471 135-469 (514)
109 2bwn_A 5-aminolevulinate synth 99.9 1.8E-23 6E-28 217.4 26.5 331 96-469 49-398 (401)
110 1wyu_B Glycine dehydrogenase s 99.9 8.2E-23 2.8E-27 218.0 32.2 327 105-470 78-440 (474)
111 1c4k_A Protein (ornithine deca 99.9 8E-24 2.7E-28 235.4 25.1 301 144-471 178-566 (730)
112 1bw0_A TAT, protein (tyrosine 99.9 1.8E-23 6.1E-28 218.5 26.3 341 94-470 34-412 (416)
113 3nyt_A Aminotransferase WBPE; 99.9 1.9E-24 6.7E-29 222.4 18.0 320 97-466 6-359 (367)
114 1vp4_A Aminotransferase, putat 99.9 1.1E-23 3.9E-28 221.1 23.9 340 93-470 43-417 (425)
115 1o69_A Aminotransferase; struc 99.9 2.4E-23 8.4E-28 216.4 25.1 324 102-470 7-386 (394)
116 2po3_A 4-dehydrase; external a 99.9 3E-23 1E-27 217.7 26.0 332 97-474 20-389 (424)
117 1fg7_A Histidinol phosphate am 99.9 5.3E-23 1.8E-27 210.9 26.8 309 94-466 30-353 (356)
118 3if2_A Aminotransferase; YP_26 99.9 2.7E-23 9.2E-28 219.1 25.1 345 93-470 31-439 (444)
119 3ftb_A Histidinol-phosphate am 99.9 1.2E-22 4.1E-27 207.7 29.0 316 93-469 26-359 (361)
120 3pj0_A LMO0305 protein; struct 99.9 4.9E-24 1.7E-28 218.0 18.3 330 92-467 12-358 (359)
121 2x5f_A Aspartate_tyrosine_phen 99.9 2.1E-23 7.3E-28 219.1 22.7 337 93-470 47-428 (430)
122 1v72_A Aldolase; PLP-dependent 99.9 3.1E-23 1.1E-27 211.2 23.2 323 95-470 9-352 (356)
123 3vp6_A Glutamate decarboxylase 99.9 5.2E-23 1.8E-27 221.6 26.0 312 133-468 129-502 (511)
124 3op7_A Aminotransferase class 99.9 4.3E-23 1.5E-27 212.4 23.6 287 146-470 70-370 (375)
125 3e77_A Phosphoserine aminotran 99.9 1.4E-23 4.9E-28 216.6 19.6 330 100-470 19-374 (377)
126 3m5u_A Phosphoserine aminotran 99.9 3.5E-23 1.2E-27 212.9 22.3 328 94-470 5-359 (361)
127 1w23_A Phosphoserine aminotran 99.9 7.9E-24 2.7E-28 216.4 17.3 326 95-469 4-358 (360)
128 3t18_A Aminotransferase class 99.9 6.7E-23 2.3E-27 214.0 24.3 326 94-469 38-408 (413)
129 1lc5_A COBD, L-threonine-O-3-p 99.9 1.2E-22 4.1E-27 208.5 25.8 318 94-470 25-359 (364)
130 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.6E-22 5.4E-27 209.7 26.8 316 100-464 8-389 (390)
131 3qm2_A Phosphoserine aminotran 99.9 3E-24 1E-28 222.8 13.3 333 95-470 28-384 (386)
132 2aeu_A Hypothetical protein MJ 99.9 5.3E-23 1.8E-27 212.8 22.3 331 81-470 14-370 (374)
133 3ei9_A LL-diaminopimelate amin 99.9 9.2E-23 3.1E-27 214.4 24.3 338 94-467 57-424 (432)
134 3jzl_A Putative cystathionine 99.9 1.4E-22 4.8E-27 211.9 25.4 307 80-421 7-340 (409)
135 3tcm_A Alanine aminotransferas 99.9 1.3E-22 4.6E-27 217.8 25.8 328 105-471 107-494 (500)
136 3ez1_A Aminotransferase MOCR f 99.9 7.5E-23 2.6E-27 214.3 23.1 357 74-471 7-415 (423)
137 3d6k_A Putative aminotransfera 99.9 5.7E-23 2E-27 215.6 21.9 358 71-470 11-417 (422)
138 2vyc_A Biodegradative arginine 99.9 7.8E-23 2.7E-27 229.2 23.5 298 144-471 210-605 (755)
139 1svv_A Threonine aldolase; str 99.9 1.7E-22 6E-27 205.7 22.7 322 95-469 15-356 (359)
140 3lws_A Aromatic amino acid bet 99.9 6.9E-23 2.4E-27 209.4 19.7 331 95-468 12-356 (357)
141 3ihj_A Alanine aminotransferas 99.9 1.3E-22 4.5E-27 217.8 22.7 329 104-471 101-493 (498)
142 3g7q_A Valine-pyruvate aminotr 99.9 9.9E-23 3.4E-27 212.6 20.2 344 93-471 31-413 (417)
143 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.4E-21 4.7E-26 206.1 29.0 321 101-469 37-434 (437)
144 2ez2_A Beta-tyrosinase, tyrosi 99.9 4.2E-22 1.4E-26 210.8 25.0 330 96-470 45-430 (456)
145 4e1o_A HDC, histidine decarbox 99.9 2.7E-22 9.2E-27 214.4 23.4 333 105-470 91-477 (481)
146 3ppl_A Aspartate aminotransfer 99.9 8.2E-22 2.8E-26 206.9 26.4 294 146-471 85-420 (427)
147 1gc0_A Methionine gamma-lyase; 99.9 8.3E-22 2.8E-26 205.3 25.5 322 97-467 31-397 (398)
148 3fkd_A L-threonine-O-3-phospha 99.9 1.3E-21 4.5E-26 199.4 26.3 313 93-470 15-341 (350)
149 3k40_A Aromatic-L-amino-acid d 99.9 4E-22 1.4E-26 212.8 22.6 313 131-470 105-470 (475)
150 3b1d_A Betac-S lyase; HET: PLP 99.8 6.3E-25 2.1E-29 228.0 0.0 336 94-469 32-391 (392)
151 2qma_A Diaminobutyrate-pyruvat 99.9 3.2E-21 1.1E-25 206.8 28.7 335 103-469 110-494 (497)
152 3ht4_A Aluminum resistance pro 99.9 3.2E-22 1.1E-26 210.7 20.3 286 76-390 9-313 (431)
153 2x3l_A ORN/Lys/Arg decarboxyla 99.9 9.5E-23 3.2E-27 215.9 16.3 280 144-469 62-351 (446)
154 3n75_A LDC, lysine decarboxyla 99.9 5E-22 1.7E-26 219.4 22.4 296 135-469 195-558 (715)
155 1uu1_A Histidinol-phosphate am 99.9 6.1E-22 2.1E-26 201.0 21.0 302 94-466 20-333 (335)
156 4f4e_A Aromatic-amino-acid ami 99.9 2.4E-22 8.1E-27 210.6 18.3 350 72-468 26-419 (420)
157 2okj_A Glutamate decarboxylase 99.9 7.8E-21 2.7E-25 204.1 29.8 307 135-469 128-500 (504)
158 2z67_A O-phosphoseryl-tRNA(SEC 99.9 8.6E-22 2.9E-26 209.1 21.4 336 101-468 88-455 (456)
159 3asa_A LL-diaminopimelate amin 99.9 1.7E-21 5.7E-26 202.8 23.1 331 94-470 34-392 (400)
160 2jis_A Cysteine sulfinic acid 99.9 2.9E-21 9.9E-26 208.1 25.0 309 134-469 143-513 (515)
161 2fyf_A PSAT, phosphoserine ami 99.9 1E-21 3.5E-26 204.2 20.5 324 94-469 40-396 (398)
162 7aat_A Aspartate aminotransfer 99.9 1.2E-21 4.2E-26 203.5 20.8 348 74-468 7-400 (401)
163 3k7y_A Aspartate aminotransfer 99.9 1.7E-21 5.7E-26 203.7 21.4 347 72-469 6-403 (405)
164 2eh6_A Acoat, acetylornithine 99.9 1.9E-20 6.5E-25 192.4 28.4 310 105-467 45-374 (375)
165 1js3_A DDC;, DOPA decarboxylas 99.9 2.4E-21 8.2E-26 207.1 22.4 331 106-470 87-473 (486)
166 3f6t_A Aspartate aminotransfer 99.9 6.2E-21 2.1E-25 206.4 25.7 341 95-471 105-525 (533)
167 3ruy_A Ornithine aminotransfer 99.9 1E-20 3.5E-25 195.9 25.3 312 105-468 53-391 (392)
168 1e5e_A MGL, methionine gamma-l 99.9 1.9E-20 6.3E-25 195.7 27.3 289 133-471 60-395 (404)
169 1pff_A Methionine gamma-lyase; 99.9 4.6E-21 1.6E-25 193.9 21.9 282 145-467 4-330 (331)
170 1wyu_A Glycine dehydrogenase ( 99.9 8.4E-21 2.9E-25 200.2 24.8 291 138-468 107-437 (438)
171 1ax4_A Tryptophanase; tryptoph 99.9 4.4E-21 1.5E-25 203.5 22.7 327 107-470 55-440 (467)
172 2rfv_A Methionine gamma-lyase; 99.9 2.7E-21 9.3E-26 201.2 20.7 289 134-467 63-396 (398)
173 1qgn_A Protein (cystathionine 99.9 7.1E-21 2.4E-25 201.1 23.8 287 133-469 112-443 (445)
174 1yaa_A Aspartate aminotransfer 99.9 1.1E-21 3.7E-26 204.8 16.9 327 94-469 30-409 (412)
175 3cog_A Cystathionine gamma-lya 99.9 5.4E-21 1.8E-25 199.8 21.7 288 134-467 66-398 (403)
176 2cb1_A O-acetyl homoserine sul 99.9 1E-19 3.5E-24 190.4 31.4 292 134-466 55-411 (412)
177 2fq6_A Cystathionine beta-lyas 99.9 4.2E-21 1.5E-25 201.3 20.7 289 133-466 80-413 (415)
178 2zy4_A L-aspartate beta-decarb 99.9 1.5E-20 5.2E-25 203.8 24.0 340 95-471 106-522 (546)
179 4h51_A Aspartate aminotransfer 99.9 1.1E-20 3.8E-25 198.0 22.1 354 73-471 23-417 (420)
180 3fsl_A Aromatic-amino-acid ami 99.9 6.3E-21 2.1E-25 197.6 19.4 327 94-467 27-396 (397)
181 3meb_A Aspartate aminotransfer 99.9 3.1E-20 1E-24 196.6 25.0 351 72-469 26-442 (448)
182 3qhx_A Cystathionine gamma-syn 99.9 2.4E-20 8.3E-25 194.0 23.7 255 133-426 64-342 (392)
183 4eu1_A Mitochondrial aspartate 99.9 6.6E-21 2.3E-25 198.7 19.4 344 72-468 18-408 (409)
184 1vef_A Acetylornithine/acetyl- 99.9 2E-20 6.8E-25 193.9 22.1 315 104-468 61-394 (395)
185 3ndn_A O-succinylhomoserine su 99.9 2.2E-20 7.7E-25 195.7 22.6 289 133-468 79-413 (414)
186 1ajs_A Aspartate aminotransfer 99.9 4.9E-21 1.7E-25 199.7 16.8 323 94-469 31-409 (412)
187 3ri6_A O-acetylhomoserine sulf 99.9 1.8E-20 6E-25 197.4 20.6 292 133-468 80-429 (430)
188 4adb_A Succinylornithine trans 99.8 1.1E-19 3.7E-24 188.8 24.6 319 105-471 56-400 (406)
189 1cs1_A CGS, protein (cystathio 99.8 2.6E-19 9E-24 185.3 27.2 281 146-467 59-383 (386)
190 2q7w_A Aspartate aminotransfer 99.8 6.1E-21 2.1E-25 197.6 14.1 330 94-467 27-395 (396)
191 2oqx_A Tryptophanase; lyase, p 99.8 4.3E-20 1.5E-24 195.8 20.9 327 107-470 53-441 (467)
192 2oat_A Ornithine aminotransfer 99.8 5E-19 1.7E-23 186.8 28.7 321 95-469 78-437 (439)
193 1s0a_A Adenosylmethionine-8-am 99.8 9.8E-19 3.3E-23 183.5 30.1 334 95-469 45-422 (429)
194 1n8p_A Cystathionine gamma-lya 99.8 7.7E-20 2.6E-24 190.3 21.0 280 145-467 61-391 (393)
195 2ord_A Acoat, acetylornithine 99.8 2.4E-19 8.3E-24 186.0 23.8 307 105-469 57-395 (397)
196 1ibj_A CBL, cystathionine beta 99.8 7.3E-20 2.5E-24 194.5 20.2 322 94-469 90-460 (464)
197 1z7d_A Ornithine aminotransfer 99.8 1.2E-18 4.1E-23 183.6 29.2 312 105-470 82-428 (433)
198 2pb2_A Acetylornithine/succiny 99.8 3.1E-19 1.1E-23 187.2 24.0 311 105-470 74-417 (420)
199 1sff_A 4-aminobutyrate aminotr 99.8 7.6E-19 2.6E-23 183.7 26.6 321 104-470 57-423 (426)
200 2ay1_A Aroat, aromatic amino a 99.8 2.7E-20 9.4E-25 192.7 15.0 319 94-467 27-392 (394)
201 3acz_A Methionine gamma-lyase; 99.8 1.3E-18 4.6E-23 180.6 27.6 249 134-425 58-330 (389)
202 2eo5_A 419AA long hypothetical 99.8 9.1E-19 3.1E-23 183.5 24.9 326 95-469 44-416 (419)
203 3nx3_A Acoat, acetylornithine 99.8 4.9E-18 1.7E-22 176.0 29.9 323 95-469 38-393 (395)
204 3i4j_A Aminotransferase, class 99.8 6.4E-18 2.2E-22 177.3 27.8 326 105-470 46-427 (430)
205 3nmy_A Xometc, cystathionine g 99.8 2.3E-18 7.7E-23 179.7 23.1 215 133-387 65-289 (400)
206 2ctz_A O-acetyl-L-homoserine s 99.8 1.8E-18 6.1E-23 181.6 21.9 157 134-317 57-220 (421)
207 3dxv_A Alpha-amino-epsilon-cap 99.8 1.1E-17 3.8E-22 176.0 26.2 330 95-470 45-424 (439)
208 1zod_A DGD, 2,2-dialkylglycine 99.8 2.1E-17 7.1E-22 173.5 27.0 326 105-469 60-430 (433)
209 3a8u_X Omega-amino acid--pyruv 99.8 8.6E-18 2.9E-22 177.5 24.0 317 105-469 67-445 (449)
210 3n5m_A Adenosylmethionine-8-am 99.8 1.8E-16 6.3E-21 167.4 34.2 330 105-469 66-450 (452)
211 3bwn_A AT1G70560, L-tryptophan 99.8 1E-18 3.5E-23 181.5 14.7 278 138-469 71-385 (391)
212 2hox_A ALLIIN lyase 1; cystein 99.8 5.6E-19 1.9E-23 185.8 12.7 322 94-469 57-423 (427)
213 3tfu_A Adenosylmethionine-8-am 99.8 8.5E-17 2.9E-21 170.6 29.1 323 105-470 92-452 (457)
214 3l44_A Glutamate-1-semialdehyd 99.8 1.8E-16 6.3E-21 166.4 31.1 322 94-470 56-429 (434)
215 3gju_A Putative aminotransfera 99.8 4.1E-16 1.4E-20 165.3 33.6 329 105-470 68-455 (460)
216 3i5t_A Aminotransferase; pyrid 99.8 5.2E-16 1.8E-20 165.5 31.8 328 104-471 70-454 (476)
217 3dod_A Adenosylmethionine-8-am 99.8 4.6E-16 1.6E-20 164.4 31.0 319 105-471 61-443 (448)
218 3fq8_A Glutamate-1-semialdehyd 99.8 1.6E-15 5.3E-20 158.9 34.4 317 95-469 54-425 (427)
219 4a6r_A Omega transaminase; tra 99.8 2.1E-16 7.1E-21 167.6 27.7 327 105-471 67-449 (459)
220 3k28_A Glutamate-1-semialdehyd 99.7 4.5E-16 1.5E-20 163.4 28.2 321 94-469 54-425 (429)
221 3bc8_A O-phosphoseryl-tRNA(SEC 99.7 2.3E-18 7.8E-23 180.2 10.3 312 134-470 93-442 (450)
222 2epj_A Glutamate-1-semialdehyd 99.7 2E-16 6.7E-21 166.3 24.1 325 94-470 57-430 (434)
223 4ffc_A 4-aminobutyrate aminotr 99.7 6.4E-16 2.2E-20 163.7 27.6 328 105-470 81-448 (453)
224 3hmu_A Aminotransferase, class 99.7 3.4E-16 1.2E-20 166.7 25.6 320 105-471 72-452 (472)
225 2cjg_A L-lysine-epsilon aminot 99.7 3.5E-16 1.2E-20 165.4 25.5 313 105-469 71-446 (449)
226 3oks_A 4-aminobutyrate transam 99.7 1.2E-15 4.1E-20 161.4 28.2 327 105-469 78-449 (451)
227 2e7u_A Glutamate-1-semialdehyd 99.7 4.6E-16 1.6E-20 163.0 24.3 320 95-467 54-423 (424)
228 4e77_A Glutamate-1-semialdehyd 99.7 7.5E-15 2.6E-19 153.9 32.4 325 94-469 54-427 (429)
229 2cy8_A D-phgat, D-phenylglycin 99.7 1.1E-15 3.8E-20 161.5 26.2 322 94-471 58-435 (453)
230 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 1.4E-16 4.8E-21 164.9 18.5 311 133-471 110-461 (501)
231 1ohv_A 4-aminobutyrate aminotr 99.6 1.6E-14 5.6E-19 153.7 18.9 316 105-469 80-469 (472)
232 4ao9_A Beta-phenylalanine amin 99.5 1.2E-11 3.9E-16 130.4 28.1 308 105-470 104-445 (454)
233 2yky_A Beta-transaminase; tran 99.2 7.8E-15 2.7E-19 155.4 0.0 317 94-470 101-459 (465)
234 4atq_A 4-aminobutyrate transam 99.2 4.7E-08 1.6E-12 103.1 34.8 331 104-470 80-454 (456)
235 4a0g_A Adenosylmethionine-8-am 99.0 8.5E-09 2.9E-13 116.5 21.1 211 232-469 577-826 (831)
236 4e3q_A Pyruvate transaminase; 99.0 8.2E-07 2.8E-11 94.0 31.0 325 105-471 84-468 (473)
237 2yxb_A Coenzyme B12-dependent 46.7 16 0.00055 31.8 3.9 52 214-270 46-97 (161)
238 1vr6_A Phospho-2-dehydro-3-deo 42.4 24 0.00081 35.1 4.7 57 226-282 220-287 (350)
239 1y80_A Predicted cobalamin bin 42.2 32 0.0011 31.1 5.4 60 214-278 116-179 (210)
240 3nvt_A 3-deoxy-D-arabino-heptu 42.1 24 0.00084 35.5 4.9 57 226-282 256-323 (385)
241 1vs1_A 3-deoxy-7-phosphoheptul 41.6 32 0.0011 32.9 5.5 57 226-282 152-219 (276)
242 2ab1_A Hypothetical protein; H 39.2 63 0.0022 26.7 6.2 50 228-278 48-97 (122)
243 1xrs_B D-lysine 5,6-aminomutas 36.2 48 0.0016 31.4 5.6 59 214-277 157-222 (262)
244 1ccw_A Protein (glutamate muta 34.5 24 0.00083 29.7 3.0 52 214-270 31-82 (137)
245 1zco_A 2-dehydro-3-deoxyphosph 31.8 54 0.0018 31.0 5.2 58 226-283 137-205 (262)
246 1vli_A Spore coat polysacchari 30.3 82 0.0028 31.6 6.5 86 226-314 165-262 (385)
247 3ezx_A MMCP 1, monomethylamine 29.0 46 0.0016 30.4 4.1 61 212-277 118-184 (215)
248 4gfq_A Ribosome-recycling fact 29.0 1.5E+02 0.005 27.0 7.3 47 410-469 100-146 (209)
249 2wqp_A Polysialic acid capsule 28.5 43 0.0015 33.2 4.0 90 226-319 155-255 (349)
250 3ghf_A Septum site-determining 24.9 98 0.0034 25.4 5.0 46 229-274 25-78 (120)
251 2i2x_B MTAC, methyltransferase 24.1 81 0.0028 29.5 5.0 53 213-270 150-202 (258)
252 3bzy_B ESCU; auto cleavage pro 24.1 40 0.0014 26.0 2.2 20 259-278 29-48 (83)
253 3l2f_A Glycocyamine kinase bet 23.0 5.4E+02 0.019 25.6 10.9 58 410-471 317-375 (390)
254 4gqr_A Pancreatic alpha-amylas 22.9 30 0.001 35.3 1.8 28 251-278 71-98 (496)
255 1is1_A Ribosome recycling fact 21.7 3.9E+02 0.014 23.6 8.7 48 409-469 75-122 (185)
256 1uhe_A Aspartate 1-decarboxyla 21.5 1.3E+02 0.0044 23.8 4.7 15 239-253 73-87 (97)
257 1vc3_B L-aspartate-alpha-decar 21.4 1.2E+02 0.0042 23.9 4.5 15 238-252 74-88 (96)
258 1dd5_A Ribosome recycling fact 21.2 3.9E+02 0.013 23.6 8.5 47 410-469 76-122 (185)
259 2gm2_A Conserved hypothetical 20.8 1E+02 0.0035 25.8 4.4 49 228-278 51-99 (132)
260 3plx_B Aspartate 1-decarboxyla 20.7 1.6E+02 0.0053 23.5 5.0 14 239-252 74-87 (102)
261 3q58_A N-acetylmannosamine-6-p 20.7 2.1E+02 0.0073 26.1 7.0 48 230-278 90-137 (229)
262 3igs_A N-acetylmannosamine-6-p 20.5 2.1E+02 0.0073 26.1 7.0 48 230-278 90-137 (232)
No 1
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=100.00 E-value=2.4e-109 Score=851.37 Aligned_cols=448 Identities=60% Similarity=1.023 Sum_probs=386.6
Q ss_pred hhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 010008 70 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 149 (520)
Q Consensus 70 ~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~ 149 (520)
.++.|.+.|||++++|++|.+||+++|+||||||++|++|++|++|+|+|||+|||||+|||+||+++|++|.+|++|++
T Consensus 31 ~~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak 110 (490)
T 3ou5_A 31 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRAL 110 (490)
T ss_dssp SCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHH
T ss_pred cccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCC
Q 010008 150 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 229 (520)
Q Consensus 150 ~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~i 229 (520)
++||+++++|+|||||+||++||+++|+||++|||+||.+++++|||+|||+.+..++++++|.+|+.++|++|++++.|
T Consensus 111 ~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~I 190 (490)
T 3ou5_A 111 EAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 190 (490)
T ss_dssp HHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEE
T ss_pred HHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999988776788999999999999999999999
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCC
Q 010008 230 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 309 (520)
Q Consensus 230 D~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~G 309 (520)
|||++++++.++|||+||++.|+||+.+|++++++||+++|++|++|+||++|||+.+++++|+++||||++||||||+|
T Consensus 191 Dyd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrG 270 (490)
T 3ou5_A 191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG 270 (490)
T ss_dssp CHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCS
T ss_pred cHHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeeCCC---------cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008 310 PRGGMIFFKKDP---------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 380 (520)
Q Consensus 310 prgG~I~~~~~~---------~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~ 380 (520)
||||+|+++++. ...+++.++|++++||++||+|++|.|||+|+||+++++++|++|++|+++|++.|++.
T Consensus 271 PrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~ 350 (490)
T 3ou5_A 271 ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADA 350 (490)
T ss_dssp CSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 999999999841 12236889999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008 381 LVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI 460 (520)
Q Consensus 381 L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l 460 (520)
|.+.|++++++|||+|++++|+++.+++|..+++.|+++||.+|+|.+|+|.+++.++||||||+++|||||+++||++|
T Consensus 351 L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~I 430 (490)
T 3ou5_A 351 LLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp HHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HHhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008 461 ADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520 (520)
Q Consensus 461 a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~ 520 (520)
+++|.+++....+++++. .++++|+..+..+. ....++++||++|.+||++||+|||
T Consensus 431 A~~I~~~l~~~~~~~~~~--~kl~~f~~~~~~~~-~~~~~i~~lr~~V~~l~~~FP~pg~ 487 (490)
T 3ou5_A 431 VDFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF 487 (490)
T ss_dssp HHHHHHHHHHHHHHHHTC--CSHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred HHHHHHHHHhhhhhhhhh--hhhHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999998887654 46789887653322 1124689999999999999999996
No 2
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=100.00 E-value=1.5e-76 Score=632.92 Aligned_cols=447 Identities=60% Similarity=1.028 Sum_probs=369.6
Q ss_pred hhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008 71 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA 150 (520)
Q Consensus 71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~ 150 (520)
++.|++.||+++++|.+|.+||++.|+||+|||++|+.|++||++.++++|++|||++|||+|+++++++|++|++++++
T Consensus 32 ~~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~ 111 (490)
T 2a7v_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred cchhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008 151 AFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 230 (520)
Q Consensus 151 lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD 230 (520)
+||+++++|.++|+++||++||.+++.++++|||+|+++++.|+||++|++......+++.|..+++++|+++++++.+|
T Consensus 112 l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD 191 (490)
T 2a7v_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred HcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcC
Confidence 99999887877899999999999999999999999999999999999998754333456778777888888887789999
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCC
Q 010008 231 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 310 (520)
Q Consensus 231 ~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gp 310 (520)
+++|++++++++||+|+++.++||+..|+++|++||+++|++|++|+||++|+++.+..+++++++|++++|+||+|+||
T Consensus 192 ~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp 271 (490)
T 2a7v_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccc
Confidence 99999999866899999999999999999999999999999999999999999988888888889999999999999999
Q ss_pred CceEEEeeCCCc---------chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008 311 RGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL 381 (520)
Q Consensus 311 rgG~I~~~~~~~---------~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L 381 (520)
+||+|+++++.. ..+++.+++++.+|++.||+|+++.++|+++|++++..+++++|.+++.+|+++|++.|
T Consensus 272 ~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L 351 (490)
T 2a7v_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL 351 (490)
T ss_dssp SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998410 01246778888899999999999999999999998877788999999999999999999
Q ss_pred HHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008 382 VELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA 461 (520)
Q Consensus 382 ~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la 461 (520)
.+.|++++.+++++|++++|+++.++++.++.+.|+++||.++++.+|++.+++.+++||||++++|+||++++||++++
T Consensus 352 ~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~ 431 (490)
T 2a7v_A 352 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV 431 (490)
T ss_dssp HHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred HHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHH
Confidence 99999998877889999999988888999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008 462 DFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520 (520)
Q Consensus 462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~ 520 (520)
++|.++++...++|++. ++++||++.+++++ ....++.+||++|.+||++||+|+|
T Consensus 432 ~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 487 (490)
T 2a7v_A 432 DFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF 487 (490)
T ss_dssp HHHHHHHHHHHHHHHHC--CSHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred HHHHHHHHhhhhhhhhh--chhhHHHhhhccCh-hhHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999998888766 56899998886543 0112588999999999999999986
No 3
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=100.00 E-value=4.9e-68 Score=569.52 Aligned_cols=452 Identities=61% Similarity=1.012 Sum_probs=396.1
Q ss_pred chhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 010008 68 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 147 (520)
Q Consensus 68 ~~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~ 147 (520)
.++++++...||++++++.+|..+|.+.|+|+++||++|+.|++++.+.+.++|++|||+.+||+|++.++++|+.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~ 98 (483)
T 1rv3_A 19 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKR 98 (483)
T ss_dssp HHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHH
Confidence 34455788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCC
Q 010008 148 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 227 (520)
Q Consensus 148 ~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~ 227 (520)
++++||+++++|.++|+++||++||.+++.++++|||+|++++++|++|++|++..+...+.+.|..++.++++++++++
T Consensus 99 ~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~ 178 (483)
T 1rv3_A 99 ALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTG 178 (483)
T ss_dssp HHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTC
T ss_pred HHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCC
Confidence 99999999877767899999999999999999999999999999999999999877666677788777888988887789
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCccc
Q 010008 228 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 307 (520)
Q Consensus 228 ~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l 307 (520)
.+|+|+|++++++.+||+|+++.+++++.+|+++|++||+++|++|++|++|+.|+++.+.+++|++++|++++|+||+|
T Consensus 179 ~iD~d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l 258 (483)
T 1rv3_A 179 YIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTL 258 (483)
T ss_dssp SBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGG
T ss_pred cCCHHHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccC
Confidence 99999999999845999999966677778899999999999999999999999999988888888888999999999999
Q ss_pred CCCCceEEEeeCCCc---------chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008 308 RGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 378 (520)
Q Consensus 308 ~GprgG~I~~~~~~~---------~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~ 378 (520)
+|||||+|+++++.. ..+++.++++...+|+.+|+|+++.++++++|++++..++++++.+++.++++++.
T Consensus 259 ~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~ 338 (483)
T 1rv3_A 259 RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALS 338 (483)
T ss_dssp CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 999999999998421 00124556677778888999999999999999998877788999999999999999
Q ss_pred HHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008 379 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV 458 (520)
Q Consensus 379 ~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~ 458 (520)
+.|.+.|++++.+++++|+++++++..++++.++.+.|+++||.++++++||+.+++.+++||||++.+|+||++++|++
T Consensus 339 ~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~ 418 (483)
T 1rv3_A 339 AALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQ 418 (483)
T ss_dssp HHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHH
T ss_pred HHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHH
Confidence 99999999998876778999999987778889999999999999998888987656678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-ccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008 459 AIADFIHEGVEITLEAKKLVQ-GSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520 (520)
Q Consensus 459 ~la~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~ 520 (520)
+++++|.++++...+++.+.. .+++++|++.+.++. .....++++|++|.+||++||+|+|
T Consensus 419 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (483)
T 1rv3_A 419 KVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDE-KHQRAVRALRQEVESFAALFPLPGL 480 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHTTSCCCSS
T ss_pred HHHHHHHHHHHhccchhccccccchhhHHHHhhcccc-chhHHHHHHHHHHHHHHHhCCCCCc
Confidence 999999999987555443331 236889998886432 0012688999999999999999975
No 4
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.6e-54 Score=454.96 Aligned_cols=408 Identities=49% Similarity=0.791 Sum_probs=350.9
Q ss_pred hhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008 71 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA 150 (520)
Q Consensus 71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~ 150 (520)
..++...+|++++.+.++.+++.+.|+|++++|+++|.|++++.+.+.++|.+|||+.|||.|++..+.+|+++++++++
T Consensus 23 ~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~ 102 (447)
T 3h7f_A 23 SAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKA 102 (447)
T ss_dssp GCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999899999999999999999999999888899999
Q ss_pred HcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008 151 AFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 230 (520)
Q Consensus 151 lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD 230 (520)
++|++. ++|+++||++||.+++.++++|||+|+++++.|++|++++. .+.+.|..+..++++++++++.+|
T Consensus 103 ~~g~~~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d 173 (447)
T 3h7f_A 103 LFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATHLID 173 (447)
T ss_dssp HHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHSSEEEEECCCTTTCSCC
T ss_pred HcCCCc----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh-----hhhhcCCeeEEEEcCcCcccCCcC
Confidence 999986 46768999999999999999999999999999999877765 234456656778888877778999
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCC
Q 010008 231 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 310 (520)
Q Consensus 231 ~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gp 310 (520)
+++++++++..+|++|+++.++||+..++++|+++|+++|++||+|++|+.|++..+..+.+++++|++++|+||+|+||
T Consensus 174 ~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~ 253 (447)
T 3h7f_A 174 MDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGG 253 (447)
T ss_dssp HHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCC
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCC
Confidence 99999999766899999988999988899999999999999999999999998877776777778999999999999999
Q ss_pred CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-----C
Q 010008 311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-----G 385 (520)
Q Consensus 311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-----G 385 (520)
+||++++++ ++.+.++...+++.+|+++...++++++++..+..++++++.+++.++++++.+.|.+. |
T Consensus 254 ~gG~i~~~~------~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 327 (447)
T 3h7f_A 254 RSGLIVGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG 327 (447)
T ss_dssp SCEEEEECG------GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred CeEEEEECH------HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 999999988 67777777777888899998888888888888766678889999999999999999887 9
Q ss_pred CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008 386 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464 (520)
Q Consensus 386 ~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i 464 (520)
++++.+++++++++++++..++++..+.+.|++.||.++.+.+|++. ++..++++|||++.+|++|++++|+++++++|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l 407 (447)
T 3h7f_A 328 VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII 407 (447)
T ss_dssp CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHH
T ss_pred eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHH
Confidence 99887556788889999877788888999999999999988888864 56778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 010008 465 HEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP 518 (520)
Q Consensus 465 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~ 518 (520)
.++++.. ++. +++++|++|.+|++.||++
T Consensus 408 ~~~l~~~--------------------~~~-----~~~~~~~~v~~~~~~~~~~ 436 (447)
T 3h7f_A 408 ATALATG--------------------SSV-----DVSALKDRATRLARAFPLY 436 (447)
T ss_dssp HHHHHSG--------------------GGC-----CHHHHHHHHHHHHHHSCSS
T ss_pred HHHHhcc--------------------Cch-----hHHHHHHHHHHHHHhCCCC
Confidence 9988642 012 2789999999999999994
No 5
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=6.3e-50 Score=418.72 Aligned_cols=409 Identities=46% Similarity=0.768 Sum_probs=344.7
Q ss_pred hhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008 72 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 151 (520)
Q Consensus 72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l 151 (520)
..+..++|++++.+.+|..++.+.|+|++++|++++.|++++...+.+.|.+|||+.+||.+....+++|+.++++++++
T Consensus 4 ~~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 83 (417)
T 3n0l_A 4 MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKL 83 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHH
Confidence 34778999999999998888889999999999999999999999998899999999999999999999999999999999
Q ss_pred cCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCH
Q 010008 152 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 231 (520)
Q Consensus 152 fg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~ 231 (520)
+|++++ +|.++||++|+.+++.++++|||+|+++++.|.++..++. .+...|..+.+++++++ +++.+|+
T Consensus 84 ~g~~~~----~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~ 153 (417)
T 3n0l_A 84 FNCKFA----NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGA-----KVSSSGKMYESCFYGVE-LDGRIDY 153 (417)
T ss_dssp HTCSEE----ECCCSSHHHHHHHHHHHHSCTTCEEEEECC---------------------CCSEEEEECCC-TTSSCCH
T ss_pred hCCCCc----ceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhh-----hhhhhcceeeeEeccCC-CCCCcCH
Confidence 999863 5777999999999999999999999999999988776554 23345555677788777 6788999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCC
Q 010008 232 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 311 (520)
Q Consensus 232 d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gpr 311 (520)
++|++++++.+|++|+++.++|+...|+++|+++|+++|++||+|++|+.|..+.+..+.++.++|++++|+||+|+|||
T Consensus 154 ~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~ 233 (417)
T 3n0l_A 154 EKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPR 233 (417)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCS
T ss_pred HHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCC
Confidence 99999998558999999888888899999999999999999999999999988777666666678999999999999999
Q ss_pred ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC
Q 010008 312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG 391 (520)
Q Consensus 312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~ 391 (520)
||+++++++ ++.+.+....+++..++++...+++++.++......+++++.+++.++++.+.+.|.+.|+++..+
T Consensus 234 ~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 308 (417)
T 3n0l_A 234 GGIIMTNDE-----ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSD 308 (417)
T ss_dssp CEEEEESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred eeEEEECCH-----HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccC
Confidence 999999853 677777776677778888999998888888876656778999999999999999999999998775
Q ss_pred CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+...+++++++...+++...+.+.|+++||.++....|+.. +++.++++|+|++.+++++++++|++++++.|.++++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 309 GTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp SCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 55678888888777778889999999999999877777765 56677899999999999999999999999999998864
Q ss_pred HHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 010008 471 TLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519 (520)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~ 519 (520)
. .+. ..+.+++++|.+|+++||+|+
T Consensus 389 ~--------------------~~~----~~~~~~~~~v~~~~~~~~~~~ 413 (417)
T 3n0l_A 389 V--------------------NNE----KLQENIKQELKKLASNFIIYE 413 (417)
T ss_dssp T--------------------TCH----HHHHHHHHHHHHHHTTCCCCS
T ss_pred c--------------------cch----hhHHHHHHHHHHHHhcCCCcc
Confidence 2 011 368899999999999999975
No 6
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=100.00 E-value=1.9e-47 Score=399.95 Aligned_cols=409 Identities=48% Similarity=0.788 Sum_probs=323.0
Q ss_pred ccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC
Q 010008 74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN 153 (520)
Q Consensus 74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg 153 (520)
+...+|++++++.++.+++.+.+.+++++|+++|.|.+++...+.+.|..|||+.+||.+..+.+.+++.+++++++++|
T Consensus 11 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (420)
T 3gbx_A 11 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG 90 (420)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC
Confidence 67889999999999888888999999999999999999999999888888999999999888888889889899999999
Q ss_pred CCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHH
Q 010008 154 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM 233 (520)
Q Consensus 154 ~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~ 233 (520)
++++ +|.++||++|+.+++.++++|||+|++.++.|++++.++. .+...|..+..++++++ +++.+|+++
T Consensus 91 ~~~~----~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~~~ 160 (420)
T 3gbx_A 91 ADYA----NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGS-----PVNFSGKLYNIVPYGID-ESGKIDYDE 160 (420)
T ss_dssp CSEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-----------------CHHHHSEEEEEEEC-TTCSCCHHH
T ss_pred CCCc----eeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccch-----hhhhcccceeEEeccCC-ccCCcCHHH
Confidence 9864 5667999999999999999999999999999988765554 23344555566777777 568899999
Q ss_pred HHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCce
Q 010008 234 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313 (520)
Q Consensus 234 le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG 313 (520)
|++++++.++++|+++.|++|+..|+++|+++|+++|++||+|++|+.|....+..+.++..+|++++|+||++.||+||
T Consensus 161 l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg 240 (420)
T 3gbx_A 161 MAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGG 240 (420)
T ss_dssp HHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCE
T ss_pred HHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCce
Confidence 99999876799999988999999999999999999999999999998888766655555667899999999999999999
Q ss_pred EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 393 (520)
Q Consensus 314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt 393 (520)
++++++.. .++.+.++...+++.+++++...+++++.++......+++++.+++.++++++.+.|.+.|++++.++.
T Consensus 241 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 317 (420)
T 3gbx_A 241 LILAKGGD---EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGT 317 (420)
T ss_dssp EEEESSCC---HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred EEEEcCCc---HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCC
Confidence 99998721 046666666667777888888888888888877655667888999999999999999999999877545
Q ss_pred CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHH
Q 010008 394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL 472 (520)
Q Consensus 394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~ 472 (520)
..+++++++...+.+...+.+.|+++||.+.....|++. .++.+.++||+++..++++++++|++++++.|+++++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~- 396 (420)
T 3gbx_A 318 ENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI- 396 (420)
T ss_dssp SSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT-
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc-
Confidence 567888888766677888999999999999876667654 456678899999999999999999999999999988642
Q ss_pred HHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 010008 473 EAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519 (520)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~ 519 (520)
++. ..+++++++|.+|+++||+++
T Consensus 397 -------------------~~~----~~~~~~~~~~~~~~~~~~~~~ 420 (420)
T 3gbx_A 397 -------------------NDE----ATIERVKAKVLDICARFPVYA 420 (420)
T ss_dssp -------------------TCH----HHHHHHHHHHHHHHHHSCSCC
T ss_pred -------------------ccc----hhHHHHHHHHHHHHHhCCCCC
Confidence 011 368899999999999999874
No 7
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.4e-46 Score=394.02 Aligned_cols=417 Identities=49% Similarity=0.766 Sum_probs=323.4
Q ss_pred hhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008 69 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 148 (520)
Q Consensus 69 ~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~ 148 (520)
++..++...+|+++..+.++..++.+.++|++++|+.++.|++++...+.+.|..|+|+.+||.+....+.+++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (425)
T 3ecd_A 8 FFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERV 87 (425)
T ss_dssp HHHCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHH
Confidence 45677888999999999888888888999999999999999999999998899899999999998887778888888899
Q ss_pred HHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC
Q 010008 149 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 228 (520)
Q Consensus 149 ~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~ 228 (520)
++++|++. ++|.+++|++|+..++.++++|||+|++.++.|++++.++. .....|..+..++++++++++.
T Consensus 88 ~~~~~~~~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~ 158 (425)
T 3ecd_A 88 KRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA-----KPALSGKWFNALQYGVSRDTML 158 (425)
T ss_dssp HHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC-----------------------CEEEEECCCTTTSS
T ss_pred HHHhCCCC----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch-----hhhhcccceeeeecCCCcccCc
Confidence 99999986 35667899999999999999999999999999887654443 2234555567778877766789
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccC
Q 010008 229 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR 308 (520)
Q Consensus 229 iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~ 308 (520)
+|+++|+++++..+|++|+++.++||...++++|+++|+++|++||+|++|+.|....+....+++.+|++++|+||+|+
T Consensus 159 ~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~ 238 (425)
T 3ecd_A 159 IDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLR 238 (425)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGC
T ss_pred cCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccC
Confidence 99999999998558999999988999999999999999999999999999999887766555555568999999999999
Q ss_pred CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008 309 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL 388 (520)
Q Consensus 309 GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v 388 (520)
|||+|+++++++ ++.+.+....+++.+++++...+++++.++......+++++.+++.++++++.+.|.+.|+++
T Consensus 239 g~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 313 (425)
T 3ecd_A 239 GPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDL 313 (425)
T ss_dssp CCSCEEEEESCH-----HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCH-----HHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 999999999864 576777766677777788888888888787766656678899999999999999999999998
Q ss_pred ecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
+.++...+++++++.+.+.+...+.+.|+++||.+.....||+. +++.++++|+|++.+++++++++|++++++.|.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~ 393 (425)
T 3ecd_A 314 VTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEV 393 (425)
T ss_dssp GGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence 86544567788888765667888999999999999866667754 45567899999999999999999999999999998
Q ss_pred HHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 010008 468 VEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP 518 (520)
Q Consensus 468 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~ 518 (520)
++.... ++ +.+. ..+++++++|.+||+.||+.
T Consensus 394 l~~~~~------~~---------~~~~----~~~~~~~~~~~~~~~~~~~~ 425 (425)
T 3ecd_A 394 FEALRT------NP---------EGDH----ATEQRVRREIFALCERFPIY 425 (425)
T ss_dssp HHHHHH------CT---------TCCH----HHHHHHHHHHHHHHHTSCCC
T ss_pred Hhcccc------cc---------ccCc----hhHHHHHHHHHHHHhcCCCC
Confidence 875310 10 1112 36789999999999999974
No 8
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-41 Score=352.82 Aligned_cols=402 Identities=50% Similarity=0.809 Sum_probs=318.8
Q ss_pred cccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC
Q 010008 75 GEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 154 (520)
Q Consensus 75 ~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~ 154 (520)
...||++++.+.++..++...|++..++|+.++.|++++...+.+.+..+||+.+++.|.+..+.+|+.+++++++++|+
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~ 84 (407)
T 2dkj_A 5 LKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA 84 (407)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC
Confidence 45689999999999888888999999999999999999999987666678888777777777778888888899999999
Q ss_pred CCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHH
Q 010008 155 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 234 (520)
Q Consensus 155 ~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~l 234 (520)
+++ +|.++||++|+.+++.++++|||+|+++++.|++++.... .+...|..+..++++++++++.+|++++
T Consensus 85 ~~~----~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l 155 (407)
T 2dkj_A 85 AWA----NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-----RVNFSGKLYKVVSYGVRPDTELIDLEEV 155 (407)
T ss_dssp SEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECCCTTTSSCCHHHH
T ss_pred Ccc----eEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHH-----HHHhcCceEEEEecCCCcccCccCHHHH
Confidence 863 5667999999999999999999999999998876642221 2334555446667666655688999999
Q ss_pred HHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceE
Q 010008 235 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM 314 (520)
Q Consensus 235 e~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~ 314 (520)
++.+++.++++|+++.|+||...|+++|.++|+++|+++|+|++|..|+...+....++..+|++++|+||+|+|+++|+
T Consensus 156 ~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~ 235 (407)
T 2dkj_A 156 RRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGL 235 (407)
T ss_dssp HHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEE
T ss_pred HHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceE
Confidence 99998558999999888899888999999999999999999999988777666544444468999999999999999999
Q ss_pred EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008 315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD 394 (520)
Q Consensus 315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~ 394 (520)
++++++ ++.+.+.....++..++++...++++..+++.....++++..+++.++++++.+.|.+.|++++.+...
T Consensus 236 ~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 310 (407)
T 2dkj_A 236 ILSNDP-----ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTD 310 (407)
T ss_dssp EEESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred EEECCH-----HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCC
Confidence 999832 677766655455556777777776777778775555668888999999999999999889988753234
Q ss_pred CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHH
Q 010008 395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE 473 (520)
Q Consensus 395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~ 473 (520)
.+++++++...+.+...+.+.|.+.||.+..+..|.+. .+..++++|++.+.+|+++.+++|++++++.|+++++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~--- 387 (407)
T 2dkj_A 311 NHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE--- 387 (407)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH---
T ss_pred ceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc---
Confidence 56778887644557788888899999999765433221 22346789999876665667899999999999887652
Q ss_pred HHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 010008 474 AKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP 518 (520)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~ 518 (520)
++ .+.++++|.+|..+||+|
T Consensus 388 -------------------~~------~~~~~~~~~~~~~~~~~~ 407 (407)
T 2dkj_A 388 -------------------GP------SEALREEVRRLALAHPMP 407 (407)
T ss_dssp -------------------CC------CHHHHHHHHHHHHTSCCC
T ss_pred -------------------Cc------hHHHHHHHHHHHHhcCCC
Confidence 01 145888999999999985
No 9
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=100.00 E-value=7.7e-41 Score=348.45 Aligned_cols=401 Identities=50% Similarity=0.820 Sum_probs=316.0
Q ss_pred hccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc
Q 010008 73 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF 152 (520)
Q Consensus 73 ~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf 152 (520)
.+..+||+++..+.++..++.+.+.+.+++++.++.|++++...+.++|..|||+.+||.|.+...++|+.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~ 82 (405)
T 2vi8_A 3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF 82 (405)
T ss_dssp SHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 35668999999999888887777878889999999999999999877777788888888887778889988889999999
Q ss_pred CCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHH
Q 010008 153 NLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYD 232 (520)
Q Consensus 153 g~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d 232 (520)
|++++ +|.++||++|+.+++.++++|||+|+++++.|+++...+. .+...|..++++.++++++++.+|++
T Consensus 83 g~~~~----~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~ 153 (405)
T 2vi8_A 83 GAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYD 153 (405)
T ss_dssp TCSEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-----TTSHHHHHSEEEEECBCTTTCSBCHH
T ss_pred CCCce----EEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-----hhhhccceeEEEecccccccCCcCHH
Confidence 99853 4667899999999999999999999999988776543221 12234544467777776556889999
Q ss_pred HHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc
Q 010008 233 MLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312 (520)
Q Consensus 233 ~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg 312 (520)
++++++++.++++|+++.++++...|+++|+++|+++|++||+|++|..|....+....++.++|++++|+||++.||.|
T Consensus 154 ~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g 233 (405)
T 2vi8_A 154 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG 233 (405)
T ss_dssp HHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC
T ss_pred HHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC
Confidence 99999986589999987677776779999999999999999999999877655444443344689999999999988889
Q ss_pred eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG 392 (520)
Q Consensus 313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g 392 (520)
|++++++ ++.+.+.....++..++++...++++..+++.....++++..+++.++++++.+.|.+.|++++.+.
T Consensus 234 G~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 307 (405)
T 2vi8_A 234 GMILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG 307 (405)
T ss_dssp EEEEECH------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred eEEEEcH------HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCC
Confidence 9999986 6777666554555667778888888777887765556688889999999999999998899887643
Q ss_pred CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
...+++++++...+.+...+.+.|.+.||.+..+..|.+. ++..++++|++++.++++.++++|++++++.|.++++..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 308 TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred CCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 3456778887644567788888999999999765433222 233467899998877777788999999999998876521
Q ss_pred HHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHH
Q 010008 472 LEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALT 512 (520)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 512 (520)
. ++ ..+..+|++|.+|+
T Consensus 388 -------------------~-~~----~~~~~~~~~~~~~~ 404 (405)
T 2vi8_A 388 -------------------G-SE----QALEEARQRVAALT 404 (405)
T ss_dssp -------------------T-CH----HHHHHHHHHHHHHH
T ss_pred -------------------c-cc----ccHHHHHHHHHHhh
Confidence 1 11 24678999999987
No 10
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=4.6e-28 Score=249.43 Aligned_cols=330 Identities=16% Similarity=0.116 Sum_probs=235.2
Q ss_pred ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC--CCCceeeecCChHHHHH
Q 010008 96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPANF 173 (520)
Q Consensus 96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~--~~~~~~V~~~sGs~A~~ 173 (520)
+.+.++..++++.|++++...+.+.+ +.. ...+...+++++++++|+++ ++ .+...+|++|+.
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~~~~~la~~~~~~~~~~~---v~~~~g~t~al~ 68 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVGFT-----------SKE-FVEALAYSLKGLRYVMGASKNYQP---LIIPGGGTSAME 68 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCCTT-----------SHH-HHHHHHHHHHHHHHHHTCCTTSEE---EEEESCHHHHHH
T ss_pred eeccCCCCCCCHHHHHHhhccccccc-----------cHH-HHHHHHHHHHHHHHHhCCCCCCcE---EEEcCCcHHHHH
Confidence 45677788899999999987654221 111 23344456689999999987 42 133345569999
Q ss_pred HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008 174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253 (520)
Q Consensus 174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 253 (520)
++.++++|||+|++++++|.+. .+. ..+...|. +++.++++. ++.+|++++++++++.++++|+++.++|
T Consensus 69 -~~~~~~~~gd~vi~~~~~~~~~---~~~---~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~n 138 (384)
T 3zrp_A 69 -SVTSLLKPNDKILVVSNGVFGD---RWE---QIFKRYPV--NVKVLRPSP-GDYVKPGEVEEEVRKSEYKLVALTHVET 138 (384)
T ss_dssp -HGGGGCCTTCEEEEECSSHHHH---HHH---HHHTTSSC--EEEEECCST-TCCCCHHHHHHHHHHSCEEEEEEESEET
T ss_pred -HHHhhcCCCCEEEEecCCcchH---HHH---HHHHHcCC--cEEEecCCC-CCCCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 9999999999999998765331 110 11233454 666777763 6789999999999887899999998888
Q ss_pred CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008 254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 330 (520)
Q Consensus 254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~ 330 (520)
|+ ..|+++|.++|+++|++||+|++|..+....+... .++|++++|+||++.|+.| |++++++ ++.++
T Consensus 139 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~~ 209 (384)
T 3zrp_A 139 STGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEE---WNVDVYLTASQKALGSAAGLGLLLLSP------KALSI 209 (384)
T ss_dssp TTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTT---TTCSEEEEETTSTTCCCSSEEEEEECH------HHHHH
T ss_pred CCceECcHHHHHHHHHhcCCEEEEECcccccCccccccc---cCCCEEEecCcccccCCCceEEEEECH------HHHHH
Confidence 76 78999999999999999999999886654222111 1589999999999977665 9999987 55444
Q ss_pred h-cccC---------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008 331 I-NNAV---------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL 388 (520)
Q Consensus 331 i-~~~~---------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v 388 (520)
+ .... .....|+++...++++..+++.....++++..+++.++++.+.+.|.+.|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 289 (384)
T 3zrp_A 210 LDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEI 289 (384)
T ss_dssp HHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred hcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 4 1000 11112577788888887788766544567888999999999999999888887
Q ss_pred ecCC---CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008 389 VSGG---SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH 465 (520)
Q Consensus 389 ~~~g---t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~ 465 (520)
..+. ...+++++.+.. .+..++.+.|.+.||.+.. |...+. +++||+....+ +++|++++++.|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~----g~~~~~--~~iRi~~~~~~----~~e~i~~~~~~l~ 357 (384)
T 3zrp_A 290 VARRPESYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAP----GVHPAF--KYFRIGHMGWV----TPNDAIIAISVIE 357 (384)
T ss_dssp SCSSGGGBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEE----CCCTTC--CEEEEECCSSC----CHHHHHHHHHHHH
T ss_pred ccCcccccCccEEEEECCC--CCHHHHHHHHHHCCEEEec----CCCCCc--CEEEEeccccC----CHHHHHHHHHHHH
Confidence 6542 123455666643 5778888888888999853 331111 78999976544 4899999999999
Q ss_pred HHHHHH
Q 010008 466 EGVEIT 471 (520)
Q Consensus 466 ~~l~~~ 471 (520)
++++..
T Consensus 358 ~~l~~~ 363 (384)
T 3zrp_A 358 RTLRKL 363 (384)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 988753
No 11
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=5.3e-28 Score=246.20 Aligned_cols=324 Identities=13% Similarity=0.041 Sum_probs=231.5
Q ss_pred ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHHH
Q 010008 96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFE 174 (520)
Q Consensus 96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~~ 174 (520)
+.+.++..++++.|++++...+... +++ .. .......++++++++|++++ +|..+ +|++|+..
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~l~~~la~~~g~~~~----~i~~~~g~t~a~~~ 66 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHH--------RTE---AA-REVFLKARGLLREAFRTEGE----VLILTGSGTLAMEA 66 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCT--------TSH---HH-HHHHHHHHHHHHHHHTCSSE----EEEEESCHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCCc--------cCH---HH-HHHHHHHHHHHHHHhCCCCc----eEEEcCchHHHHHH
Confidence 5667788889999999998766421 112 11 12223456889999999864 33344 56699999
Q ss_pred HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008 175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 254 (520)
Q Consensus 175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p 254 (520)
++.++++|||+|+++++.|.++. .. ..+...|. +++.++++ +++.+|++++++ + ++++|++++++||
T Consensus 67 ~~~~~~~~gd~vl~~~~~~~~~~--~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~---~-~~~~v~~~~~~np 133 (352)
T 1iug_A 67 LVKNLFAPGERVLVPVYGKFSER--FY----EIALEAGL--VVERLDYP-YGDTPRPEDVAK---E-GYAGLLLVHSETS 133 (352)
T ss_dssp HHHHHCCTTCEEEEEECSHHHHH--HH----HHHHHTTC--EEEEEECC-TTCCCCTTTSCC---S-SCSEEEEESEETT
T ss_pred HHHhccCCCCeEEEEeCCchhHH--HH----HHHHHcCC--ceEEEeCC-CCCCCCHHHHhc---c-CCcEEEEEEecCC
Confidence 99999999999999998765532 00 01122354 66666666 356789988876 3 7999999988887
Q ss_pred C--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008 255 R--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 327 (520)
Q Consensus 255 ~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l 327 (520)
+ ..|+++|.++|+++ |+++++|++|..|....+ +. ++|++++|+||++.||.| |++++++ ++
T Consensus 134 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-----~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~------~~ 202 (352)
T 1iug_A 134 TGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA-----LEAMGVDAAASGSQKGLMCPPGLGFVALSP------RA 202 (352)
T ss_dssp TTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCC-----SGGGTCSEEEEESSSTTCCCSCEEEEEECH------HH
T ss_pred cceecCHHHHHHHHHhhCCCCEEEEECCccccCccee-----ccccCeeEEEecCcccccCCCceeEEEECH------HH
Confidence 6 78999999999999 999999999876543221 22 579999999999988876 9999987 44
Q ss_pred HHhh---------c----ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008 328 ESAI---------N----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD 394 (520)
Q Consensus 328 ~~~i---------~----~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~ 394 (520)
.+++ . ........++++...++++..+++.... ++++..+++.++++++.+.|++.|+++..+...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 281 (352)
T 1iug_A 203 LERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP-RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFS 281 (352)
T ss_dssp HHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBC
T ss_pred HHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCcccccccC
Confidence 3331 1 0001122456677777777778877653 367888899999999999998888887654213
Q ss_pred CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
.+++++.+. .+.+..++.+.|.+.||.+..+. .+..++++||++...+ +++|++++++.|+++++.
T Consensus 282 ~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~-----~~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 282 PAVAAFYLP-EGVPYARVKEAFAQRGAVIAGGQ-----GPLKGKVFRLSLMGAY----DRYEALGVAGMFREVLEE 347 (352)
T ss_dssp TTCEEEECC-TTCCHHHHHHHHHTTTEECEECC-----GGGTTTEEEECCCSSC----CHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHCCEEEEeCC-----CccCCCEEEEEccccC----CHHHHHHHHHHHHHHHHH
Confidence 456677764 25677888888888899985432 1223578999987544 489999999999988753
No 12
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=1.9e-27 Score=247.48 Aligned_cols=334 Identities=15% Similarity=0.121 Sum_probs=237.7
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 174 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~ 174 (520)
.+.+.++...+++.|++++.+.+.+.+ ...+. .+...+++++++++|++.++. .+...||++|+.+
T Consensus 14 ~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~~-~~~~~~~~~la~~~~~~~~~~--v~~~~sgt~al~~ 79 (411)
T 3nnk_A 14 RLLMGPGPINADPRVLRAMSSQLIGQY-----------DPAMT-HYMNEVMALYRGVFRTENRWT--MLVDGTSRAGIEA 79 (411)
T ss_dssp CEEESSSCCCCCHHHHHHHTSCCCCTT-----------CHHHH-HHHHHHHHHHHHHHTCCCSEE--EEEESCHHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhhccccccc-----------cHHHH-HHHHHHHHHHHHHhCCCCCcE--EEECCCcHHHHHH
Confidence 356667777889999999976542211 11222 333455689999999986532 2344567899999
Q ss_pred HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008 175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 254 (520)
Q Consensus 175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p 254 (520)
++.++++|||+|++.++.|.+.. + ...+...|. +++.++++ +++.+|+++|++++++.++++|++++++||
T Consensus 80 ~~~~~~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 150 (411)
T 3nnk_A 80 ILVSAIRPGDKVLVPVFGRFGHL---L---CEIARRCRA--EVHTIEVP-WGEVFTPDQVEDAVKRIRPRLLLTVQGDTS 150 (411)
T ss_dssp HHHHHCCTTCEEEEEECSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHHhcCCCCEEEEecCCchHHH---H---HHHHHHcCC--eEEEEecC-CCCCCCHHHHHHHHhhCCCeEEEEeCCCCC
Confidence 99999999999999998664321 1 012233454 56666665 467899999999998668999999987777
Q ss_pred C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008 255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 331 (520)
Q Consensus 255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i 331 (520)
+ ..|+++|+++|+++|+++|+|++|..|....+... .++|++++|+||++.||.| |++++++ ++.+++
T Consensus 151 tG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~---~~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~~ 221 (411)
T 3nnk_A 151 TTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDV---WGLDAVSAGMQKCLGGPSGTSPITLSA------RMEEAI 221 (411)
T ss_dssp TTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTT---TTCSEEECCSTTTTCCCSSEEEEEECH------HHHHHH
T ss_pred cceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhc---cCCcEEEecCccccCCCCceEEEEECH------HHHHHH
Confidence 6 78999999999999999999999876644222111 1589999999999877766 9999887 565554
Q ss_pred cccC-----------------------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008 332 NNAV-----------------------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 376 (520)
Q Consensus 332 ~~~~-----------------------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~ 376 (520)
.... .....++++...++++..+++.....++++..+++.+++++
T Consensus 222 ~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 301 (411)
T 3nnk_A 222 RRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDA 301 (411)
T ss_dssp HTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4321 01123567778888887788766544467888999999999
Q ss_pred HHHHHHHCCCEEecCCC--CCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCC
Q 010008 377 LASRLVELGYKLVSGGS--DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGF 452 (520)
Q Consensus 377 l~~~L~~~G~~v~~~gt--~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~ 452 (520)
+.+.|.+.|+++..+.. ..+++++.+. .+.+..++.+.|.+ +||.+..+.. +...+++||++ +..+
T Consensus 302 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~~---- 371 (411)
T 3nnk_A 302 LVKGIQAMGLETFGDLKHKMNNVLGVVIP-QGINGDQARKLMLEDFGIEIGTSFG-----PLHGKVWRIGTMGYNA---- 371 (411)
T ss_dssp HHHHHHHTTCCBCSCGGGBCSSEEEEECC-TTCCHHHHHHHHHHHHSEEEEECCG-----GGTTTEEEEECCGGGC----
T ss_pred HHHHHHHcCCEeCCCcccccccEEEEECC-CCCCHHHHHHHHHHhcCeEEeCccC-----CCCCCEEEEeCccCcC----
Confidence 99999998888765321 2345555553 35677787777755 5999964321 22356899997 4333
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 010008 453 SEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 453 ~~~d~~~la~~i~~~l~~ 470 (520)
+++|++++++.|+++++.
T Consensus 372 ~~~~i~~~~~~l~~~l~~ 389 (411)
T 3nnk_A 372 RKDCVMTTLSALEAVLNY 389 (411)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 489999999999998864
No 13
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.96 E-value=2.3e-27 Score=247.30 Aligned_cols=335 Identities=13% Similarity=0.095 Sum_probs=236.9
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 174 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~ 174 (520)
.+.+.++...+++.|++++....... +. .....+....++++++++|++++.. .+.+.||++|+.+
T Consensus 12 ~~~~~p~p~~~~~~v~~a~~~~~~~~----------~~--~~~~~~~~~l~~~la~~~g~~~~~~--~~~~~s~t~al~~ 77 (416)
T 3isl_A 12 RTIMTPGPVEVDPRVLRVMSTPVVGQ----------FD--PAFTGIMNETMEMLRELFQTKNRWA--YPIDGTSRAGIEA 77 (416)
T ss_dssp CEECSSSSCCCCHHHHHHTTSCCCCT----------TS--HHHHHHHHHHHHHHHHHTTCCCSEE--EEEESCHHHHHHH
T ss_pred ceeecCCCcCcCHHHHHHhcccCCCC----------cc--HHHHHHHHHHHHHHHHHhCCCCCcE--EEecCcHHHHHHH
Confidence 35566777778999999886532111 11 1123444456689999999987521 2245677799999
Q ss_pred HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008 175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 254 (520)
Q Consensus 175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p 254 (520)
++.++++|||+|+++++.|.++. + ...+...|. +++.++++ .++.+|++++++++++.++++|++++++||
T Consensus 78 ~~~~l~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 148 (416)
T 3isl_A 78 VLASVIEPEDDVLIPIYGRFGYL---L---TEIAERYGA--NVHMLECE-WGTVFDPEDIIREIKKVKPKIVAMVHGETS 148 (416)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHHhcCCCCEEEEecCCcccHH---H---HHHHHhcCC--eeEEEecC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCC
Confidence 99999999999999998654311 1 012334454 66666676 457899999999998448999999988887
Q ss_pred C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008 255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 331 (520)
Q Consensus 255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i 331 (520)
+ ..|+++|.++|+++|+++++|++|..|....+... .++|++++|+||++.||.| |++++++ ++.+++
T Consensus 149 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~l~g~~g~g~~~~~~------~~~~~~ 219 (416)
T 3isl_A 149 TGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDE---WKIDAAIGGTQKCLSVPSGMAPITYNE------RVADVI 219 (416)
T ss_dssp TTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTT---TTCSEEECCSSSTTCCCSSEEEEEECH------HHHHHH
T ss_pred CceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhh---cCCCEEEecCccccCCCCCeEEEEECH------HHHHHh
Confidence 6 78999999999999999999999887654322111 1589999999999877776 8998887 555544
Q ss_pred ccc-------------------------------------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008 332 NNA-------------------------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC 374 (520)
Q Consensus 332 ~~~-------------------------------------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na 374 (520)
... ......++++...++++..+++.....++++..+++.+++
T Consensus 220 ~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~ 299 (416)
T 3isl_A 220 AARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHE 299 (416)
T ss_dssp HTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 321 1111245677778888877887665444788889999999
Q ss_pred HHHHHHHHHCCCEEecCCC--CCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008 375 RALASRLVELGYKLVSGGS--DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG 451 (520)
Q Consensus 375 ~~l~~~L~~~G~~v~~~gt--~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g 451 (520)
+++.+.|.+.|+++..+.. ..+++++.+. .+.+..++.+.|.+ +||.+..+. .+..++++||+.+..++
T Consensus 300 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~-----~~~~~~~iRi~~~~~~~-- 371 (416)
T 3isl_A 300 AALAAGIKAMGLRLFGDDSCKMPVVTCVEIP-GGIDGESVRDMLLAQFGIEIASSF-----GPLAGKIWRIGTMGYSC-- 371 (416)
T ss_dssp HHHHHHHHHTTCCBCSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCC-----STTTTTEEEEECCGGGC--
T ss_pred HHHHHHHHHcCCEeccCccccCCcEEEEeCC-CCCCHHHHHHHHHHhCCEEEecCC-----CCCCCCEEEEecccCCC--
Confidence 9999999998888765421 1344555552 35677888887765 499996432 12346799999855443
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 010008 452 FSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 452 ~~~~d~~~la~~i~~~l~~ 470 (520)
.+++++++++.|+++++.
T Consensus 372 -~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 372 -RKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp -SHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHH
Confidence 244499999999998864
No 14
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=3.9e-27 Score=242.84 Aligned_cols=326 Identities=13% Similarity=0.131 Sum_probs=233.2
Q ss_pred ecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeee-cCChHHHHHHHH
Q 010008 99 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQ-PLSGSPANFEVY 176 (520)
Q Consensus 99 iasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~-~~sGs~A~~~~l 176 (520)
.++...+++.|++++...+.+.| + .. ...+.+.+++++++++|++ ++ +|. +.+|++|+..++
T Consensus 25 ~~~~~~~~~~v~~a~~~~~~~~~----------~-~~-~~~~~~~~~~~la~~~g~~~~~----~v~~~~g~t~a~~~~~ 88 (386)
T 2dr1_A 25 TAGPVACFPEVLEIMKVQMFSHR----------S-KE-YRKVHMDTVERLREFLEVEKGE----VLLVPSSGTGIMEASI 88 (386)
T ss_dssp CSSSCCCCHHHHHHTTSCCCCTT----------S-HH-HHHHHHHHHHHHHHHHTCSSSE----EEEESSCHHHHHHHHH
T ss_pred cCCCcCCcHHHHHHHhccccccc----------C-HH-HHHHHHHHHHHHHHHhCCCCCc----EEEEeCChHHHHHHHH
Confidence 34556789999999987654322 1 11 2445556678999999997 32 343 455569999999
Q ss_pred HhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh-cCCcEEEEcCCCCCC
Q 010008 177 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAYPR 255 (520)
Q Consensus 177 ~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-~~pklIi~~~s~~p~ 255 (520)
.++++|||+|+++++.|.++. +. ..+...|. +++.++++ .++.+|+++|++++++ .++++|++++++||+
T Consensus 89 ~~l~~~gd~vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~npt 159 (386)
T 2dr1_A 89 RNGVSKGGKVLVTIIGAFGKR---YK---EVVESNGR--KAVVLEYE-PGKAVKPEDLDDALRKNPDVEAVTITYNETST 159 (386)
T ss_dssp HHHSCTTCEEEEEESSHHHHH---HH---HHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHCTTCCEEEEESEETTT
T ss_pred HHhhcCCCeEEEEcCCchhHH---HH---HHHHHhCC--ceEEEecC-CCCCCCHHHHHHHHhcCCCCcEEEEEeecCCc
Confidence 999999999999998775420 10 12233454 66666676 3578999999999953 379999998877776
Q ss_pred --CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008 256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 330 (520)
Q Consensus 256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~ 330 (520)
..|+++|.++|+++|+++|+|++|..|.... ++. ++|++++|+||++.+|.| |++++++ ++.++
T Consensus 160 G~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~-----~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~------~~~~~ 228 (386)
T 2dr1_A 160 GVLNPLPELAKVAKEHDKLVFVDAVSAMGGADI-----KFDKWGLDVVFSSSQKAFGVPPGLAIGAFSE------RFLEI 228 (386)
T ss_dssp TEECCHHHHHHHHHHTTCEEEEECTTTBTTBCC-----CTTTTTCSEEEEETTSTTCCCSSCEEEEECH------HHHHH
T ss_pred chhCCHHHHHHHHHHcCCeEEEEccccccCccc-----cccccCCcEEEEeccccccCCCceEEEEECH------HHHHH
Confidence 7899999999999999999999988664321 222 579999999999988754 9999987 55554
Q ss_pred hcc---------------cC--CCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008 331 INN---------------AV--FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSGG 392 (520)
Q Consensus 331 i~~---------------~~--~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g 392 (520)
+.. .. .....++++...++++..+++..... ++++..+++.++++.+.+.|.+.|+++..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 308 (386)
T 2dr1_A 229 AEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEP 308 (386)
T ss_dssp HTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCT
T ss_pred HhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCc
Confidence 421 00 01223456666777777778765433 4678889999999999999998888876541
Q ss_pred --CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 393 --SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 393 --t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
...+++++.+. .+.+..++.+.|.+.||.+..+..| ..++++||++...+ +++|++++++.|+++++.
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~-----~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 309 GHESPTITAVLTP-PGIKGDEVYEAMRKRGFELAKGYGS-----VKEKTFRIGHMGYM----KFEDIQEMLDNLREVINE 378 (386)
T ss_dssp TCBCSSEEEEECC-TTCCHHHHHHHHHHTTEECEECCGG-----GTTTEEEEECCSSC----CHHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEEEcC-CCCCHHHHHHHHHHCCeEEecCccc-----cCCCEEEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence 12456667664 3557778888888889998543211 23578999987533 489999999999998764
No 15
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=3.8e-27 Score=243.98 Aligned_cols=334 Identities=12% Similarity=0.095 Sum_probs=236.1
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceee-ecCChHHHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV-QPLSGSPANF 173 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V-~~~sGs~A~~ 173 (520)
.+.+.+++..+++.|++++...+.+.| ....+......++++++++|+++++ +| ...+|++|+.
T Consensus 20 ~~~~~~g~~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~g~~~~~---~i~~~~g~t~a~~ 84 (393)
T 2huf_A 20 KLLMGPGPSNAPQRVLDAMSRPILGHL------------HPETLKIMDDIKEGVRYLFQTNNIA---TFCLSASGHGGME 84 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTSCCCCTT------------SHHHHHHHHHHHHHHHHHHTCCCSE---EEEESSCHHHHHH
T ss_pred eEEecCCCCCCCHHHHHHHHhhhccCC------------CHHHHHHHHHHHHHHHHHhCCCCCc---EEEEcCcHHHHHH
Confidence 466666777789999999987654322 1122333445668999999997641 33 3455669999
Q ss_pred HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008 174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253 (520)
Q Consensus 174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 253 (520)
.++.++++|||+|+++++.|.++. + ...+...|. +++.++++ +++.+|++++++++++.++++|++++++|
T Consensus 85 ~~~~~~~~~gd~vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 155 (393)
T 2huf_A 85 ATLCNLLEDGDVILIGHTGHWGDR---S---ADMATRYGA--DVRVVKSK-VGQSLSLDEIRDALLIHKPSVLFLTQGDS 155 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHHhCCCCEEEEECCCcchHH---H---HHHHHHcCC--eeEEEeCC-CCCCCCHHHHHHHHhccCCcEEEEEccCC
Confidence 999999999999999998765421 1 001122354 56666666 35789999999999765799999998888
Q ss_pred CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008 254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 330 (520)
Q Consensus 254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~ 330 (520)
|+ ..|+++|.++|+++|+++|+|++|..|....+... .++|++++|+||++.||.| |++++++ ++.++
T Consensus 156 ptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~sK~l~g~~G~G~~~~~~------~~~~~ 226 (393)
T 2huf_A 156 STGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDR---WEIDAMYTGSQKVLGAPPGITPVSFSH------RAVER 226 (393)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTT---TTCSEEECCSSSTTCCCSSCEEEEECH------HHHHH
T ss_pred CccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhh---cCccEEEECCCcccccCCCeEEEEECH------HHHHH
Confidence 76 77899999999999999999999876644222111 1579999999999887777 9999987 66665
Q ss_pred hccc---CCC-------------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008 331 INNA---VFP-------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL 388 (520)
Q Consensus 331 i~~~---~~p-------------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v 388 (520)
+... ..+ ...++++...++++..+++.....++++..+++.++++++.+.|.+.|+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 306 (393)
T 2huf_A 227 YKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFEL 306 (393)
T ss_dssp HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred HhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence 5432 111 123567788888777788765433467788899999999999998888877
Q ss_pred ecCC--CCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008 389 VSGG--SDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH 465 (520)
Q Consensus 389 ~~~g--t~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~ 465 (520)
+.+. ..++++++.+. .+.+..++.+.|. +.||.+..+..+ ..++++||++...+ .+++|++++++.|+
T Consensus 307 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~-----~~~~~~Ri~~~~~~---~~~e~i~~~~~~l~ 377 (393)
T 2huf_A 307 YADPKDRLSTVTTIKVP-QGVDWLKAAQYAMKTYLVEISGGLGP-----TAGQVFRIGLMGQN---ATTERVDRVLQVFQ 377 (393)
T ss_dssp SSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCCGG-----GTTTEEEEECCGGG---CSHHHHHHHHHHHH
T ss_pred ccCccccCCcEEEEEcC-CCCCHHHHHHHHHHhCCEEEecCccc-----ccCCEEEEEcccCc---CCHHHHHHHHHHHH
Confidence 6542 12345566653 3567777777775 469998543211 23578999984332 24789999999999
Q ss_pred HHHHH
Q 010008 466 EGVEI 470 (520)
Q Consensus 466 ~~l~~ 470 (520)
++++.
T Consensus 378 ~~~~~ 382 (393)
T 2huf_A 378 EAVAA 382 (393)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 16
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.96 E-value=5.1e-27 Score=243.44 Aligned_cols=342 Identities=15% Similarity=0.119 Sum_probs=238.3
Q ss_pred cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecC-ChHH
Q 010008 95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPL-SGSP 170 (520)
Q Consensus 95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~-sGs~ 170 (520)
.+.|..+++ +.|+.|++++...+.+.+ +.|... +..+... .......++++++++|. +++ +|..+ +|++
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~~~~~~----~v~~~~g~t~ 96 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQA-TEKMENVRKRASLFINARSAE----ELVFVRGTTE 96 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHH-HHHHHHHHHHHHHHTTCSCGG----GEEEESSHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHH-HHHHHHHHHHHHHHcCCCCCC----eEEEeCChhH
Confidence 567765553 678999999998886543 222210 1111111 22223456889999999 444 33344 4559
Q ss_pred HHHHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008 171 ANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 171 A~~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI 246 (520)
|+.+++.++ ++|||+|+++++.|.+.+.. +. ..+...|. +++.++++ +++.+|+++|++++++ ++++|
T Consensus 97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~-~~---~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~l~~-~~~~v 168 (406)
T 1kmj_A 97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVP-WQ---MLCARVGA--ELRVIPLN-PDGTLQLETLPTLFDE-KTRLL 168 (406)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHH-HH---HHHHHHTC--EEEEECBC-TTSCBCGGGHHHHCCT-TEEEE
T ss_pred HHHHHHHHhhhhcCCCCCEEEEecccchHHHHH-HH---HHHHhCCC--EEEEEecC-CCCCcCHHHHHHHhcc-CCeEE
Confidence 999999999 89999999999988665321 10 01223354 66667776 4578999999999987 89999
Q ss_pred EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCC
Q 010008 247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDP 321 (520)
Q Consensus 247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~ 321 (520)
+++.++||+ ..|+++|.++|+++|+++++|++|..|.... .+. ++|++++|+||++ ||.| |++++++
T Consensus 169 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~-----~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~-- 240 (406)
T 1kmj_A 169 AITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPV-----DVQALDCDFYVFSGHKLY-GPTGIGILYVKE-- 240 (406)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC-----CHHHHTCSEEEEEGGGTT-SCTTCEEEEECH--
T ss_pred EEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCC-----cccccCCCEEEEEchhcc-CCCCcEEEEEeH--
Confidence 998887775 7899999999999999999999987664321 121 5799999999988 7776 9999987
Q ss_pred cchhhHHHhhcccCCC---------------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008 322 VLGVELESAINNAVFP---------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 380 (520)
Q Consensus 322 ~~~~~l~~~i~~~~~p---------------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~ 380 (520)
++.+++...... ...|+++..+++++..+++.+...++++..+++.++++.+.+.
T Consensus 241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (406)
T 1kmj_A 241 ----ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQ 316 (406)
T ss_dssp ----HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 676666543321 1145677778888766777654345677788888999999999
Q ss_pred HHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC--CCC-CCCEEEEccCCccccCCCHHH
Q 010008 381 LVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SAL-VPGGIRIGSPAMTTRGFSEKE 456 (520)
Q Consensus 381 L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~~~-~~~giRig~~~~tt~g~~~~d 456 (520)
|.+. |+++..+.....++++.+. +.+..++.+.|.+.||.+..+...... ..+ .++++||+.+..+ +++|
T Consensus 317 L~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~----t~~~ 390 (406)
T 1kmj_A 317 LESVPDLTLYGPQNRLGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYN----THEE 390 (406)
T ss_dssp HTTSTTEEEESCTTCCSEEEEEET--TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTC----CHHH
T ss_pred HhcCCCeEEecCCCcCCEEEEEEC--CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCC----CHHH
Confidence 9885 8887764213455666664 456778888999999998543210000 001 2578999987543 4899
Q ss_pred HHHHHHHHHHHHH
Q 010008 457 FVAIADFIHEGVE 469 (520)
Q Consensus 457 ~~~la~~i~~~l~ 469 (520)
++++++.|+++++
T Consensus 391 i~~~~~~l~~~~~ 403 (406)
T 1kmj_A 391 VDRLVTGLQRIHR 403 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 17
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=2.3e-27 Score=244.05 Aligned_cols=332 Identities=13% Similarity=0.095 Sum_probs=230.6
Q ss_pred hccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008 93 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 172 (520)
Q Consensus 93 ~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~ 172 (520)
....++.+++..+|+.|++++...+...+ + ..+ ..+.+.+++++++++|++.+.- +.+.+.+|++|+
T Consensus 18 ~~~~~~~pgp~~~~~~v~~a~~~~~~~~~---------~--~~~-~~~~~~~~~~la~~~g~~~~~~-~i~~~~ggt~al 84 (376)
T 3f0h_A 18 QGMLNFTVGPVMSSEEVRAIGAEQVPYFR---------T--TEF-SSTMLENEKFMLEYAKAPEGSK-AVFMTCSSTGSM 84 (376)
T ss_dssp SSCEECSSSSCCCCHHHHHHHTSCCCCCS---------S--HHH-HHHHHHHHHHHHHHHTCCTTCE-EEEESSCHHHHH
T ss_pred cCceeecCCCCCCcHHHHHHhcCCCCCCC---------C--HHH-HHHHHHHHHHHHHHhCCCCCce-EEEEcCChhHHH
Confidence 35688888888899999999987553211 1 112 2333455688999999975311 222345667999
Q ss_pred HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008 173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252 (520)
Q Consensus 173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~ 252 (520)
.+++.++++|||+|+++++.+.++. +. ......|. +++.++++ .++.+|++++++++++ ++++|++++++
T Consensus 85 ~~~~~~~~~~gd~vi~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~ 154 (376)
T 3f0h_A 85 EAVVMNCFTKKDKVLVIDGGSFGHR---FV---QLCEIHEI--PYVALKLE-HGKKLTKEKLYEYDNQ-NFTGLLVNVDE 154 (376)
T ss_dssp HHHHHHHCCTTCCEEEEESSHHHHH---HH---HHHHHTTC--CEEEEECC-TTCCCCHHHHHTTTTS-CCCEEEEESEE
T ss_pred HHHHHhccCCCCeEEEEeCChhhHH---HH---HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHhhcc-CceEEEEeccc
Confidence 9999999999999999987543321 10 01223344 44555555 4578999999998876 89999998777
Q ss_pred CCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008 253 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 327 (520)
Q Consensus 253 ~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l 327 (520)
||+ ..|+++|+++|+++|+++|+|++|..+.... .+. ++|++++|+||++.|+.| |++++++ ++
T Consensus 155 nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~------~~ 223 (376)
T 3f0h_A 155 TSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPF-----NMNECGADVMITGSQKVLACPPGISVIVLAP------RG 223 (376)
T ss_dssp TTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCC-----CHHHHTCSEEEEETTTTTCCCSSCEEEEECH------HH
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEEcCccccCccc-----cccccCccEEEecCcccccCCCceEEEEECH------HH
Confidence 776 7899999999999999999999987654321 122 479999999999986666 8888877 56
Q ss_pred HHhhcccCCC----------------CCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008 328 ESAINNAVFP----------------GLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVS 390 (520)
Q Consensus 328 ~~~i~~~~~p----------------~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G~~v~~ 390 (520)
.+++.....+ +...+++...++++..+++.+... ++++..++..++++++.+.|.+.|+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 303 (376)
T 3f0h_A 224 VERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVS 303 (376)
T ss_dssp HHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECC
T ss_pred HHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 5555432111 123355566667777777766544 46778888889999999999888887765
Q ss_pred CCCCCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 391 ~gt~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+.....++.+. +.+.+..++.+.|.+. ||.+..+. ++...+.+||+.+..+ +++|++++++.|+++++
T Consensus 304 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~g~-----~~~~~~~lRis~~~~~----t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 304 ESPANGVTSVH--PTTANAYDIFLKLKDEYGIWICPNG-----GEMKDTIFRVGHIGAL----THEDNTTLVNAFKDLQK 372 (376)
T ss_dssp SSBBTTEEEEE--ESSSCHHHHHHHHHHHSSEECEECC-----GGGTTTCEEEECCSSC----CHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEe--CCCCCHHHHHHHHHHhCCEEEecCc-----cccCCCEEEEecCCCC----CHHHHHHHHHHHHHHHH
Confidence 43223333332 3456778887777776 99985431 1223578999987543 48999999999998875
No 18
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.96 E-value=1.6e-27 Score=244.72 Aligned_cols=335 Identities=15% Similarity=0.162 Sum_probs=233.1
Q ss_pred CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh
Q 010008 101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI 179 (520)
Q Consensus 101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al 179 (520)
+..++++.|++++...+.+.+ ++|+..|..+. ....+.+.+++++++++|++++ +|..++|+ +|+.+++.++
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~----~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 8 SAKPVDERILEAMLPYMTESF--GNPSSVHSYGF-KAREAVQEAREKVAKLVNGGGG----TVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHH-HHHHHHHHHHHHHHHHTTCTTE----EEEEESSHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHhhc--CCCcccchHHH-HHHHHHHHHHHHHHHHcCCCcC----eEEEECCchHHHHHHHHHh
Confidence 345789999999999887644 45554332222 2234444567899999999875 34445555 8999999998
Q ss_pred C----CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008 180 L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 255 (520)
Q Consensus 180 l----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~ 255 (520)
+ +|||+|+++++.|.+...... .+...|. +++.++++ +++.+|+++|++++++ ++++|++++++||+
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~npt 151 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAK-----FLQKQGF--EVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEI 151 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHH-----HHHHTTC--EEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTT
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHH-----HHHhcCC--EEEEeccC-CCCCcCHHHHHHHhcc-CceEEEEECCCCCc
Confidence 7 999999999988765432110 1112344 66777776 4678999999999987 89999999888876
Q ss_pred --CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008 256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN 332 (520)
Q Consensus 256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~ 332 (520)
..|+++|.++|+++|+ +++|++|..|....+... .++|++++|+||++ ||.| |+++++++ . .+.
T Consensus 152 G~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~~-g~~g~g~~~~~~~------~--~~~ 218 (382)
T 4hvk_A 152 GTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEK---IGADMLTISSNDIY-GPKGVGALWIRKE------A--KLQ 218 (382)
T ss_dssp CBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHH---HTCSEEEEESGGGT-SCTTCEEEEEETT------C--CCC
T ss_pred eeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchh---cCCCEEEEeHHHhc-CCCceEEEEEcCc------c--CcC
Confidence 7899999999999999 999999887654222111 15799999999975 6665 99998874 2 222
Q ss_pred ccCCC------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCC--CeeEEEEec
Q 010008 333 NAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD--NHLVLVDLR 403 (520)
Q Consensus 333 ~~~~p------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~--~~~~~vd~~ 403 (520)
...+. ...++++...++++..+++... .++++..+++.++++.+.+.|.+. |+.+..+... .+++.+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~- 296 (382)
T 4hvk_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRF- 296 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEE-
T ss_pred cccccCCCcCccccCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEE-
Confidence 22111 1145567777777777777543 456788889999999999999874 7887654211 23444444
Q ss_pred CCCCCHHHHHHHHhhcCeEEcCCCCCCCCC--C------CC------CCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 404 PMGIDGARVEKILDMASITLNKNSVPGDKS--A------LV------PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 404 ~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~--~------~~------~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.+.+..++.+.|.+.||.+..+..++... + +. +++|||++...+ +++|++++++.|+++++
T Consensus 297 -~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~----t~e~i~~~~~~l~~~~~ 371 (382)
T 4hvk_A 297 -SYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYN----TDEDVDRLLEVLPGVIE 371 (382)
T ss_dssp -TTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTC----CHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCC----CHHHHHHHHHHHHHHHH
Confidence 35678888899999999986542111100 0 00 578999987543 48999999999999887
Q ss_pred HH
Q 010008 470 IT 471 (520)
Q Consensus 470 ~~ 471 (520)
..
T Consensus 372 ~~ 373 (382)
T 4hvk_A 372 RL 373 (382)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 19
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=2.4e-27 Score=245.72 Aligned_cols=335 Identities=20% Similarity=0.218 Sum_probs=236.9
Q ss_pred ccceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 94 KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
..|++..+.. ..++.+.+++...+.+ |..++++.+|..| .+..++++ +++++++|.+. +|.+++|+
T Consensus 44 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt 113 (399)
T 3tqx_A 44 EVLNFCANNYLGLADHPALIKTAQTVVEQ-YGFGMASVRFICGTQTIHKELE----KDISEFLGTDD-----TILYSSCF 113 (399)
T ss_dssp EEEECSSCCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCCCCCCCBHHHHHHH----HHHHHHHTCSE-----EEEESCHH
T ss_pred eEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCcCccccCchHHHHHH----HHHHHHHCCCc-----EEEECchH
Confidence 3466666532 2368999999888764 5455666666444 34344444 78888999863 56679999
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCc
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPK 244 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pk 244 (520)
+|+..++.++++|||+|++.++.|++... .+...|. +++.++. +|++++++.+++. +++
T Consensus 114 ~a~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~~~~~ 177 (399)
T 3tqx_A 114 DANGGLFETLLGPEDAIISDELNHASIID--------GIRLCKA--QRYRYKN------NAMGDLEAKLKEADEKGARFK 177 (399)
T ss_dssp HHHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHSCCS--EEEEECT------TCTTHHHHHHHHHHTTTCSSE
T ss_pred HHHHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCC--ceeEeCC------CCHHHHHHHHHhhhccCCCce
Confidence 99999999999999999999998865431 2344554 5555543 5778898888764 789
Q ss_pred EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC----CC-CCcccEEEeccCcccCCCCceEEEe
Q 010008 245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----DP-FKYCDVVTTTTHKSLRGPRGGMIFF 317 (520)
Q Consensus 245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~----~p-~~~aDiv~~S~hK~l~GprgG~I~~ 317 (520)
+|+++.++||+ ..|+++|.++|+++|+++|+|++|..|........ .. ....|++++|+||++.|++||++++
T Consensus 178 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~ 257 (399)
T 3tqx_A 178 LIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSG 257 (399)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEE
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEc
Confidence 99999888876 77899999999999999999999876653221000 00 1246899999999998899999999
Q ss_pred eCCCcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008 318 KKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH 396 (520)
Q Consensus 318 ~~~~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~ 396 (520)
++ ++.+.+.....+. ..++++...+++...+++... .+.++..+++.++++++.+.|.+.|+++..+ ..+
T Consensus 258 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~ 328 (399)
T 3tqx_A 258 HK------EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVPG--NHP 328 (399)
T ss_dssp CH------HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--SSS
T ss_pred CH------HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCC
Confidence 88 6666654421111 134455666666666676553 3457888999999999999999888887643 345
Q ss_pred eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
++++.+.. +.+..++.+.|.+.||.+.....|+. +...+++||+.+.. .+++|++++++.|.++++.
T Consensus 329 ~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 329 IIPVMLGD-AQLATNMADHLLQEGIYVVGFSYPVV--PMGKARIRVQMSAV----HTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp EEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTTS--CTTCEEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHHHHHHHCCCEEeeeCCCCC--CCCCceEEEEeecC----CCHHHHHHHHHHHHHHHHH
Confidence 66776642 22456677888889999864322211 22356899997643 3589999999999998764
No 20
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=5.1e-27 Score=244.74 Aligned_cols=345 Identities=17% Similarity=0.147 Sum_probs=238.1
Q ss_pred cceEecCCC-CChHHHHHHHhhhhhccCCCCCCC--CCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecCChHH
Q 010008 95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPG--KRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSP 170 (520)
Q Consensus 95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~--~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~sGs~ 170 (520)
.|.|..+++ +.|+.|++++...+.+.+ +.|. ...|+ ....+.++ ..++.+++++|. ++++ .+...+|++
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~-~~~~~~~~-~l~~~la~~~~~~~~~~---v~~~~g~t~ 101 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLS-VRATDAYE-AVRNKVAKFINARSPRE---IVYTRNATE 101 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHH-HHHHHHHH-HHHHHHHHHTTCSCGGG---EEEESSHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHH-HHHHHHHH-HHHHHHHHHcCCCCCCe---EEEcCChHH
Confidence 577776554 578999999998886533 1222 11121 11112222 355789999999 5542 233445569
Q ss_pred HHHHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008 171 ANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 171 A~~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI 246 (520)
|+.+++.++ ++|||+|+++++.|.++... +. ..+...|. +++.++++ +++.+|++++++++++ ++++|
T Consensus 102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~-~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v 173 (420)
T 1t3i_A 102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVP-WQ---MVAAKTGA--VLKFVQLD-EQESFDLEHFKTLLSE-KTKLV 173 (420)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHH-HH---HHHHHHCC--EEEEECBC-TTSSBCHHHHHHHCCT-TEEEE
T ss_pred HHHHHHHHhhhcccCCCCEEEECcchhHHHHHH-HH---HHHHhcCc--EEEEeccC-CCCCcCHHHHHHhhCC-CceEE
Confidence 999999999 99999999999988764210 10 01122344 66677776 4678999999999987 89999
Q ss_pred EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008 247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL 323 (520)
Q Consensus 247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~ 323 (520)
++++++||+ ..|+++|.++|+++|+++|+|++|..|....+.... ++|++++|+||.+ ||.| |++++++
T Consensus 174 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~-~~~g~G~~~~~~---- 245 (420)
T 1t3i_A 174 TVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DCDWLVASGHKMC-APTGIGFLYGKE---- 245 (420)
T ss_dssp EEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCTTCEEEEECH----
T ss_pred EEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc---CCCEEEEehhhhc-CCCceEEEEEch----
Confidence 999888775 789999999999999999999998866432111000 4799999999965 5554 9999987
Q ss_pred hhhHHHhhcccCCCC--------------------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008 324 GVELESAINNAVFPG--------------------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE 383 (520)
Q Consensus 324 ~~~l~~~i~~~~~p~--------------------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~ 383 (520)
++.+++......+ ..|+++..+++++..+++.+...++++..+++.++++.+.+.|.+
T Consensus 246 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 323 (420)
T 1t3i_A 246 --EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ 323 (420)
T ss_dssp --HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777665433221 135677777777776777654335677888899999999999988
Q ss_pred C-CCEEecCCC----CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC--CCCC-CCEEEEccCCccccCCCHH
Q 010008 384 L-GYKLVSGGS----DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SALV-PGGIRIGSPAMTTRGFSEK 455 (520)
Q Consensus 384 ~-G~~v~~~gt----~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~~~~-~~giRig~~~~tt~g~~~~ 455 (520)
. |++++.+.. ...++++.+. +.+..++.+.|.+.||.+..+..+... ..++ ++++||+....+ +++
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~----~~~ 397 (420)
T 1t3i_A 324 IPQLRLYGPNPKHGDRAALASFNVA--GLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYN----TKE 397 (420)
T ss_dssp CTTEEEESCCGGGSCBCSEEEEEET--TBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTC----CHH
T ss_pred CCCeEEeCCCccccccCCEEEEEEC--CCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCC----CHH
Confidence 5 888876531 2455666664 356778889999999998543211000 0112 578999977543 589
Q ss_pred HHHHHHHHHHHHHHH
Q 010008 456 EFVAIADFIHEGVEI 470 (520)
Q Consensus 456 d~~~la~~i~~~l~~ 470 (520)
|++++++.|+++++.
T Consensus 398 ~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 398 EIDLFLQSLQATIRF 412 (420)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 21
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=5.3e-27 Score=242.21 Aligned_cols=335 Identities=13% Similarity=0.078 Sum_probs=233.5
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 174 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~ 174 (520)
.+.+.++...+++.|++++...+.+.+ + .. ...+....++++++++|.+.++. .+.+.+|++|+..
T Consensus 24 ~~~~~p~p~~~~~~v~~a~~~~~~~~~---------~--~~-~~~~~~~l~~~la~~~~~~~~~~--v~~~~gg~~al~~ 89 (393)
T 3kgw_A 24 RLLLGPGPSNLAPRVLAAGSLRMIGHM---------Q--KE-MLQIMEEIKQGIQYVFQTRNPLT--LVVSGSGHCAMET 89 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTCCCCCTT---------S--HH-HHHHHHHHHHHHHHHHTCCCSEE--EEESCCTTTHHHH
T ss_pred ceeccCCCCCCCHHHHHHhcccccCcc---------c--HH-HHHHHHHHHHHHHHHhCCCCCcE--EEEeCCcHHHHHH
Confidence 355677777889999999976432211 1 11 22333345688999999975421 1334566699999
Q ss_pred HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008 175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 254 (520)
Q Consensus 175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p 254 (520)
++.++++|||+|+++++.+.++ .+ ...+...|. +++.++++ +++.+|++++++++++.++++|+++.++||
T Consensus 90 ~~~~~~~~gd~vl~~~~~~~~~---~~---~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 160 (393)
T 3kgw_A 90 ALFNLLEPGDSFLTGTNGIWGM---RA---AEIADRIGA--RVHQMIKK-PGEHYTLQEVEEGLAQHKPVLLFLVHGESS 160 (393)
T ss_dssp HHHHHCCTTCEEEEEESSHHHH---HH---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHhcCCCCCEEEEEeCCchhH---HH---HHHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHhhCCCcEEEEeccCCc
Confidence 9999999999999987543211 00 012233454 56666665 356899999999998778999999988887
Q ss_pred C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008 255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 331 (520)
Q Consensus 255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i 331 (520)
+ ..|+++|.++|+++|++||+|++|..|....+... .++|++++|+||++.|+.| |++++++ ++.+.+
T Consensus 161 tG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~---~~~d~~~~s~sK~~~~~~g~g~~~~~~------~~~~~~ 231 (393)
T 3kgw_A 161 TGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQ---QGIDIMYSSSQKVLNAPPGISLISFND------KAKYKV 231 (393)
T ss_dssp TTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTT---TTCCEEEEESSSTTCCCSSCEEEEECH------HHHHHH
T ss_pred chhhccHHHHHHHHHHcCCEEEEECCccccCcccchhh---cCCCEEEecCcccccCCCceeEEEECH------HHHHHH
Confidence 6 77899999999999999999999876643222111 1579999999999977665 9999987 565555
Q ss_pred cccCCC----------------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008 332 NNAVFP----------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV 389 (520)
Q Consensus 332 ~~~~~p----------------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~ 389 (520)
.....+ ...++++...++++..+++.....++++..+++.++++.+.+.|.+.|+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 311 (393)
T 3kgw_A 232 YSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFF 311 (393)
T ss_dssp HTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred hccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence 332111 1235667777877777777665445688889999999999999998888876
Q ss_pred cCC--C-CCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008 390 SGG--S-DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH 465 (520)
Q Consensus 390 ~~g--t-~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~ 465 (520)
.+. . ...+.++.+. .+.+..++.+.|.+. ||.+..+.. +...+++||+....+ .+++|++++++.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~---~~~~~i~~~~~~l~ 382 (393)
T 3kgw_A 312 VKDPEIRLPTITTVTVP-AGYNWRDIVSYVLDHFSIEISGGLG-----PTEERVLRIGLLGYN---ATTENVDRVAEALR 382 (393)
T ss_dssp SSSGGGBCSSEEEEECC-TTBCHHHHHHHHHHHHCEECBCCCG-----GGTTTEEEEECCGGG---CCHHHHHHHHHHHH
T ss_pred cCChhhcCCeEEEEeCC-CCCCHHHHHHHHHHhCCEEEeCCcc-----cCCCCEEEEEecccC---CCHHHHHHHHHHHH
Confidence 321 1 1234445543 356777777777665 999964321 224578999963322 24899999999999
Q ss_pred HHHHH
Q 010008 466 EGVEI 470 (520)
Q Consensus 466 ~~l~~ 470 (520)
++++.
T Consensus 383 ~~l~~ 387 (393)
T 3kgw_A 383 EALQH 387 (393)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
No 22
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=3.2e-27 Score=240.05 Aligned_cols=326 Identities=14% Similarity=0.090 Sum_probs=231.5
Q ss_pred ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCC-hHHHH
Q 010008 96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLS-GSPAN 172 (520)
Q Consensus 96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~s-Gs~A~ 172 (520)
+.+++++.++|+.|++++...+.+. +|+ . ........++++++++|++ ++ +|..++ |++|+
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~--------~~~---~-~~~~~~~l~~~la~~~g~~~~~~----~v~~t~g~t~a~ 65 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGH--------LDP---E-VLRVNRAIQERLAALFDPGEGAL----VAALAGSGSLGM 65 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCT--------TCH---H-HHHHHHHHHHHHHHHHCCCTTCE----EEEESSCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhcccccc--------cCH---H-HHHHHHHHHHHHHHHhCCCCCCc----eEEEcCCcHHHH
Confidence 4677888889999999998766431 111 1 1233345668999999996 33 344455 45999
Q ss_pred HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008 173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252 (520)
Q Consensus 173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~ 252 (520)
..++.++++ |+|++++++|.++ . + ...+...|. +++.++++ +++.+|++++++.+++.++++|++++++
T Consensus 66 ~~~~~~~~~--d~vl~~~~~~~~~-~--~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 134 (353)
T 2yrr_A 66 EAGLANLDR--GPVLVLVNGAFSQ-R--V---AEMAALHGL--DPEVLDFP-PGEPVDPEAVARALKRRRYRMVALVHGE 134 (353)
T ss_dssp HHHHHTCSC--CCEEEEECSHHHH-H--H---HHHHHHTTC--CEEEEECC-TTSCCCHHHHHHHHHHSCCSEEEEESEE
T ss_pred HHHHHHhcC--CcEEEEcCCCchH-H--H---HHHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHHhCCCCEEEEEccC
Confidence 999999887 8999988766443 1 1 011233454 55666666 3578999999999976579999999888
Q ss_pred CCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008 253 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 327 (520)
Q Consensus 253 ~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l 327 (520)
||+ ..|+++|.++|+++|+++++|++|..|.. +.++. ++|++++|+||++.||.| |++++++ ++
T Consensus 135 nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~------~~ 203 (353)
T 2yrr_A 135 TSTGVLNPAEAIGALAKEAGALFFLDAVTTLGML-----PFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASL------EA 203 (353)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEECCTTSTTCCCSSCEEEEECH------HH
T ss_pred CCcceecCHHHHHHHHHHcCCeEEEEcCcccccc-----cccccccCceEEEecCcccccCCCceEEEEECH------HH
Confidence 876 78999999999999999999999865532 12222 479999999999887766 9999988 56
Q ss_pred HHhhcc--cC------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC-
Q 010008 328 ESAINN--AV------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG- 392 (520)
Q Consensus 328 ~~~i~~--~~------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g- 392 (520)
.+++.. .. .....++++...++++..+++.....++++..+++.++++++.+.|++.|+++..+.
T Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 283 (353)
T 2yrr_A 204 RKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKAS 283 (353)
T ss_dssp HHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSS
T ss_pred HHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCcc
Confidence 555531 00 011235667777777777777654444678889999999999999988888877532
Q ss_pred CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH-HHHHHHHHHHH
Q 010008 393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV-AIADFIHEGVE 469 (520)
Q Consensus 393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~-~la~~i~~~l~ 469 (520)
..++++++.+. .+.+..++.+.|.+.||.+..+..+ ..++++|++.+... +++|++ ++++.|+++++
T Consensus 284 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~-----~~~~~iRi~~~~~~----~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 284 PLPTVLVVRPP-EGVDADRLVRALYAEGVAVAGGIGP-----TRGQVLRLGLMGEG----ARREAYQAFLKALDRALA 351 (353)
T ss_dssp BCTTEEEEECC-TTCCHHHHHHHHHHTTEECEECCGG-----GTTTCEEEECSGGG----SCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHCCEEEeCCccc-----cCCCeEEEecCccC----CHHHHHHHHHHHHHHHHh
Confidence 13455566663 3567788888888889998543211 23568999985443 368898 99999988765
No 23
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.95 E-value=6.6e-27 Score=243.38 Aligned_cols=340 Identities=14% Similarity=0.073 Sum_probs=234.9
Q ss_pred cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHHH
Q 010008 95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPAN 172 (520)
Q Consensus 95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A~ 172 (520)
.+.|..+++ ++++.|++++...+.+.+ +.|...|..+... +.....+++++++++|++++ +|.+++| ++++
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~al 99 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVGAHPSARRS-AAVLDAAREAVADLVNADPG----GVVLGADRAVLL 99 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCSSSHHHHHH-HHHHHHHHHHHHHHHTCCGG----GEEEESCHHHHH
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCCccHHHHHH-HHHHHHHHHHHHHHhCCCCC----eEEEeCChHHHH
Confidence 466665543 688999999998886543 2333333222111 22333466889999999765 3444555 4888
Q ss_pred HHHHHhh---CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 173 FEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 173 ~~~l~al---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
.+++.++ ++|||+|++++++|.++...... .....|. +++.++++++++.+|+++|++.+++ ++++|+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~----~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 172 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLR----AAHRYGA--KVKWAEVDIETGELPTWQWESLISK-STRLVAVN 172 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHH----HHHHHBC--EEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEE
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHH----HHHhcCC--eEEEEecCcccCCcCHHHHHHHhCC-CceEEEEe
Confidence 8888887 79999999999888765321110 0011343 6777777756788999999999987 89999999
Q ss_pred CCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCce-EEEeeCCCcchhh
Q 010008 250 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVE 326 (520)
Q Consensus 250 ~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG-~I~~~~~~~~~~~ 326 (520)
.++||+ ..|+++|.++|+++|++|++|++|..|....+... -++|++++|+||++ ||++| ++++++ +
T Consensus 173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~---~~~d~~~~s~~K~~-g~~~G~~~~~~~------~ 242 (406)
T 3cai_A 173 SASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRE---TDADVVTVNAHAWG-GPPIGAMVFRDP------S 242 (406)
T ss_dssp SBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHH---HCCSEEEEEGGGGT-SCSCEEEEESCH------H
T ss_pred CCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchh---cCCCEEEeehhhhc-CCCcCeEEEEeh------H
Confidence 888875 78999999999999999999999886643221110 05799999999976 57788 999987 6
Q ss_pred HHHhhcccCC--C------CCCCCChHHHHHHHHHHHHHhcCc--------------hhHHHHHHHHHHHHHHHHHHHHC
Q 010008 327 LESAINNAVF--P------GLQGGPHNHTIGGLAVCLKHAQSP--------------EFKVYQNKVVSNCRALASRLVEL 384 (520)
Q Consensus 327 l~~~i~~~~~--p------~~~g~p~~~~iaala~al~~~~~~--------------~~~~~~~~i~~na~~l~~~L~~~ 384 (520)
+.+++..... . ...|+++...++++..+++..... .+++..+++.++++++.+.|.+.
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 7666654321 0 114667777777777777765542 25777888889999999999884
Q ss_pred -CCEEecCC-CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC------CCCCCCCCCCEEEEccCCccccCCCHHH
Q 010008 385 -GYKLVSGG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV------PGDKSALVPGGIRIGSPAMTTRGFSEKE 456 (520)
Q Consensus 385 -G~~v~~~g-t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~------Pg~~~~~~~~giRig~~~~tt~g~~~~d 456 (520)
|+++..+. ....++++.+. +.+..++.+.|.+.||.+..+.. .|. +...+.+||++...+ +++|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~--~~~~~~iRis~~~~~----t~e~ 394 (406)
T 3cai_A 323 PLVMLIGRPEAQIPVVSFAVH--KVPADRVVQRLADNGILAIANTGSRVLDVLGV--NDVGGAVTVGLAHYS----TMAE 394 (406)
T ss_dssp TTEEECCCCSSBCSEEEEEET--TBCHHHHHHHHHHTTEECEECCSCHHHHHHTT--TTTTCCEEEECCTTC----CHHH
T ss_pred CCeEEcCCccccCCEEEEEEC--CcCHHHHHHHHHHCCcEEecCChHHHHHHcCC--CCCCCeEEEEeecCC----CHHH
Confidence 78776542 12234555553 45678888888899999864320 010 012468999987544 4899
Q ss_pred HHHHHHHHHH
Q 010008 457 FVAIADFIHE 466 (520)
Q Consensus 457 ~~~la~~i~~ 466 (520)
++++++.|++
T Consensus 395 i~~~~~~l~~ 404 (406)
T 3cai_A 395 VDQLVRALAS 404 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988864
No 24
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.95 E-value=2.6e-26 Score=234.43 Aligned_cols=318 Identities=12% Similarity=0.064 Sum_probs=231.2
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 170 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~ 170 (520)
+.|+|..++|+ +++.|++++...+.+. .+||. ....+ .++++++++|++++ +|.+++|+ +
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~----l~~~la~~~~~~~~----~i~~~~g~~~ 79 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARDAVVKA--NRYAK-------NEILM----LGNKLAAHHQVEAP----SILLTAGSSE 79 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHHTGGGT--TSCCH-------HHHHH----HHHHHHHHTTSCGG----GEEEESHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHhhC--cCCCC-------CchHH----HHHHHHHHhCCChH----HEEEeCChHH
Confidence 56888888875 6899999999887642 23332 22333 34788899998875 44556666 9
Q ss_pred HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh-cCCcEEEEc
Q 010008 171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAG 249 (520)
Q Consensus 171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-~~pklIi~~ 249 (520)
|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ ++.+|+++++++++. .++++|+++
T Consensus 80 a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~v~l~ 148 (354)
T 3ly1_A 80 GIRAAIEAYASLEAQLVIPELTYGDGEH--------FAKIAGM--KVTKVKMLD-NWAFDIEGLKAAVAAYSGPSIVYLV 148 (354)
T ss_dssp HHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECCCT-TSCCCHHHHHHHHHTCSSCEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEECCCCchHHHH--------HHHHcCC--EEEEecCCC-CCCCCHHHHHHHhccCCCCCEEEEe
Confidence 9999999999999999999988765421 2334454 667777763 588999999999983 389999999
Q ss_pred CCCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC------cccEEEeccCccc--CCCCceEEEe
Q 010008 250 ASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGMIFF 317 (520)
Q Consensus 250 ~s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~------~aDiv~~S~hK~l--~GprgG~I~~ 317 (520)
.++||+ ..+.+++.++++. +|+++++|++|. ++...+.....+. ..+++++|+||++ +|.|.|++++
T Consensus 149 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 227 (354)
T 3ly1_A 149 NPNNPTGTITPADVIEPWIASKPANTMFIVDEAYA-EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA 227 (354)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTG-GGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC
T ss_pred CCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHH-HhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec
Confidence 888886 7788888888887 999999999976 4443332222221 2348899999997 5778899999
Q ss_pred eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008 318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL 397 (520)
Q Consensus 318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~ 397 (520)
++ ++.+.+.....+ .+++....+++..+++.. ..+++..+++.++++.+.+.|.+.|+.+..+ ...+
T Consensus 228 ~~------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~ 294 (354)
T 3ly1_A 228 HP------TVIALMGRYVAG---EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLPS--EGNF 294 (354)
T ss_dssp CH------HHHHHHGGGTTC---SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--CSSE
T ss_pred CH------HHHHHHHHhcCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECCC--CceE
Confidence 77 777777665443 244555555554455422 3357778888999999999998888877643 2345
Q ss_pred EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+++++.. +..++.+.|.++||.+. +..++ .++++||++. +++|++++++.|+++++
T Consensus 295 ~~~~~~~---~~~~~~~~l~~~gi~v~-g~~~~-----~~~~iRis~~-------~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 295 VFHQLVV---PLKDYQTHMADAGVLIG-RAFPP-----ADNWCRISLG-------TPQEMQWVADTMREFRK 350 (354)
T ss_dssp EEEECSS---CHHHHHHHHHHTTEECC-CCCTT-----CTTEEEEECC-------CHHHHHHHHHHHHHHHH
T ss_pred EEEECCC---CHHHHHHHHHHCCEEEe-ecCCC-----CCCEEEEEcC-------CHHHHHHHHHHHHHHHH
Confidence 6777753 67788888889999986 43222 3679999953 47999999999998876
No 25
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=5.1e-26 Score=234.71 Aligned_cols=328 Identities=16% Similarity=0.052 Sum_probs=227.6
Q ss_pred EecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH
Q 010008 98 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 177 (520)
Q Consensus 98 Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~ 177 (520)
+.....++++.|.+++...+.+.+. .+. . | ....+++..+++++++++|++++++ +.+.+|++|+..++.
T Consensus 35 ~~~~~~~~~~~v~~a~~~~~~~~~~--~~~-~-~---~~~~~~~~~l~~~la~~~~~~~~~i---~~~~ggt~a~~~~~~ 104 (397)
T 3f9t_A 35 FGSMCSNVLPITRKIVDIFLETNLG--DPG-L-F---KGTKLLEEKAVALLGSLLNNKDAYG---HIVSGGTEANLMALR 104 (397)
T ss_dssp CSCSCCCCCTHHHHHHHHHTTCCTT--SGG-G-B---HHHHHHHHHHHHHHHHHTTCTTCEE---EEESCHHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHHhhcCC--Ccc-c-C---hhHHHHHHHHHHHHHHHhCCCCCCE---EEecCcHHHHHHHHH
Confidence 3344456788999999888765431 221 1 1 2345666677799999999987521 334556699999999
Q ss_pred hhCCC-------------CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCc
Q 010008 178 AILKP-------------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 244 (520)
Q Consensus 178 all~p-------------GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pk 244 (520)
++.++ ||+|++.++.|.+... .+...|. +++.++++ +++.+|++++++++++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~ 173 (397)
T 3f9t_A 105 CIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEK--------GREMMDL--EYIYAPIK-EDYTIDEKFVKDAVEDYDVD 173 (397)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHH--------HHHHHTC--EEEEECBC-TTSSBCHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhhhhcccCCCCeEEEECCcchhHHHH--------HHHHcCc--eeEEEeeC-CCCcCCHHHHHHHHhhcCCe
Confidence 98766 9999999998765421 2334455 66777776 46889999999999876789
Q ss_pred EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc-------CCCCC---cccEEEeccCcccCC-CC
Q 010008 245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-------ADPFK---YCDVVTTTTHKSLRG-PR 311 (520)
Q Consensus 245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-------~~p~~---~aDiv~~S~hK~l~G-pr 311 (520)
+|+++.++||+ ..|+++|.++|+++|++||+|++|..+....... ..++. ++|++++|+||++.+ .+
T Consensus 174 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~ 253 (397)
T 3f9t_A 174 GIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIP 253 (397)
T ss_dssp EEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSS
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCC
Confidence 99988888776 7899999999999999999999986554321110 01221 579999999999854 46
Q ss_pred ceEEEeeCCCcchhhHHHhhcccCCCCC--------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008 312 GGMIFFKKDPVLGVELESAINNAVFPGL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE 383 (520)
Q Consensus 312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~--------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~ 383 (520)
.|+++++++ .+.+.+... .+.. .+++....+.+..+++..+...++++..+++.++++++.+.|.+
T Consensus 254 ~g~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 327 (397)
T 3f9t_A 254 SGGILFKDI-----GYKRYLDVD-APYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE 327 (397)
T ss_dssp CEEEEESSG-----GGGGGTCEE-CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCH-----HHHHhhccC-CccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888774 444444321 1111 12322223444444555444456678888999999999999998
Q ss_pred CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008 384 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 463 (520)
Q Consensus 384 ~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~ 463 (520)
.|++++.+. ..+++++++. +..++.+.|.+.||.+... . .++++||+++..+ +++|++++++.
T Consensus 328 ~g~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~~gi~v~~~----~----~~~~~Ri~~~~~~----~~e~i~~~~~~ 390 (397)
T 3f9t_A 328 NNFKPVIEP-ILNIVAIEDE----DYKEVCKKLRDRGIYVSVC----N----CVKALRIVVMPHI----KREHIDNFIEI 390 (397)
T ss_dssp TTCCBSSCC-SSSEEEEECT----THHHHHHHHHHTTCBCEEC----S----SSSEEEEECCTTC----CHHHHHHHHHH
T ss_pred CCCEEEcCC-CccEEEEEeC----CHHHHHHHHHhCCeEEecc----C----CCCEEEEEEcCCC----CHHHHHHHHHH
Confidence 888866543 3455666653 2677888888889988542 2 2579999987443 48999999999
Q ss_pred HHHHHH
Q 010008 464 IHEGVE 469 (520)
Q Consensus 464 i~~~l~ 469 (520)
|+++++
T Consensus 391 l~~~l~ 396 (397)
T 3f9t_A 391 LNSIKR 396 (397)
T ss_dssp HHHHC-
T ss_pred HHHhhC
Confidence 988754
No 26
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.95 E-value=1.7e-26 Score=239.15 Aligned_cols=329 Identities=13% Similarity=0.081 Sum_probs=230.0
Q ss_pred ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHHH
Q 010008 96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFE 174 (520)
Q Consensus 96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~~ 174 (520)
+.+.++..++++.|++++...+.+.| + .. ...+.+.+++++++++|++++. +|.++ +|++|+.+
T Consensus 36 ~l~~~~~~~~~~~v~~a~~~~~~~~~----------~-~~-~~~~~~~~~~~la~~~g~~~~~---~v~~t~g~t~al~~ 100 (393)
T 1vjo_A 36 LLLGPGPSNAHPSVLQAMNVSPVGHL----------D-PA-FLALMDEIQSLLRYVWQTENPL---TIAVSGTGTAAMEA 100 (393)
T ss_dssp EECSSSCCCCCHHHHHHHSSCCCCTT----------S-HH-HHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHhccccccc----------C-HH-HHHHHHHHHHHHHHHhCCCCCc---EEEEeCchHHHHHH
Confidence 34445666789999999987664322 1 11 2344445668999999997641 23344 55599999
Q ss_pred HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008 175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 254 (520)
Q Consensus 175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p 254 (520)
++.++++|||+|+++++.|.+. .+ ...+...|. +++.++++. ++.+|+++|++.+++.++++|+++.++||
T Consensus 101 ~~~~~~~~gd~Vl~~~~~~~~~---~~---~~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~np 171 (393)
T 1vjo_A 101 TIANAVEPGDVVLIGVAGYFGN---RL---VDMAGRYGA--DVRTISKPW-GEVFSLEELRTALETHRPAILALVHAETS 171 (393)
T ss_dssp HHHHHCCTTCEEEEEESSHHHH---HH---HHHHHHTTC--EEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHhccCCCCEEEEEcCChhHH---HH---HHHHHHcCC--ceEEEecCC-CCCCCHHHHHHHHhhCCceEEEEeccCCC
Confidence 9999999999999999876541 01 112233454 666666763 57899999999997657999999988877
Q ss_pred C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008 255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 329 (520)
Q Consensus 255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~ 329 (520)
+ ..|+++|.++|+++|+++++|++|..|... ..+. ++|++++|+||++.+|.+ |++++++ ++.+
T Consensus 172 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-----~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~------~~~~ 240 (393)
T 1vjo_A 172 TGARQPLEGVGELCREFGTLLLVDTVTSLGGVP-----IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSS------RAIE 240 (393)
T ss_dssp TTEECCCTTHHHHHHHHTCEEEEECTTTTTTSC-----CCTTTTTCSEEECCSSSTTCSCSSCEEEEECH------HHHH
T ss_pred cceeccHHHHHHHHHHcCCEEEEECCccccCcC-----CcccccCccEEEEcCcccccCCCceEEEEECH------HHHH
Confidence 6 778999999999999999999998855332 1222 579999999999977655 9999987 5665
Q ss_pred hhccc------C-C------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008 330 AINNA------V-F------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS 390 (520)
Q Consensus 330 ~i~~~------~-~------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~ 390 (520)
++... . + ....|+++...++++..+++.....++++..+++.++++.+.+.|.+.|+++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 320 (393)
T 1vjo_A 241 KLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHV 320 (393)
T ss_dssp HHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred HHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 55221 0 0 011236677777777778876543346778889999999999999888888765
Q ss_pred CCC--CCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 391 GGS--DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 391 ~gt--~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
+.. ..+++++.+. .+.+..++.+.|.+. ||.+..+ .. ...++++||+...++ .++++++++++.|.++
T Consensus 321 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g----~~-~~~~~~iRis~~~~~---~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 321 EKEYRLPTLTTVCIP-DGVDGKAVARRLLNEHNIEVGGG----LG-ELAGKVWRVGLMGFN---SRKESVDQLIPALEQV 391 (393)
T ss_dssp CGGGBCSSEEEEECC-TTCCHHHHHHHHHHHHCEECEEC----CG-GGTTTEEEEECCGGG---CSHHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEEcC-CCCCHHHHHHHHHhhCCEEEecC----cc-ccCCCEEEEeCCccC---ChHHHHHHHHHHHHHH
Confidence 421 1244555552 355777787777766 9998543 21 123678999953332 2367899999999876
Q ss_pred H
Q 010008 468 V 468 (520)
Q Consensus 468 l 468 (520)
+
T Consensus 392 l 392 (393)
T 1vjo_A 392 L 392 (393)
T ss_dssp H
T ss_pred h
Confidence 5
No 27
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.95 E-value=1.2e-26 Score=236.92 Aligned_cols=331 Identities=15% Similarity=0.123 Sum_probs=227.4
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCc-c-hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-N-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 172 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~-~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~ 172 (520)
.+++.++...+++.|++++...+.+ +++. . +..++ .++++++++| .++++...+...+|++|+
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~----l~~~la~~~g-~~~~~~~v~~~~g~t~a~ 69 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDSCT----------WDDDYNIGVVEQ----IRQQLTALAT-ASEGYTSVLLQGSGSYAV 69 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCCT----------TSHHHHTTTHHH----HHHHHHHHHC-SSSSEEEEEEESCHHHHH
T ss_pred cccccCCCcCCCHHHHHHHhhhhcC----------CCHHHHHHHHHH----HHHHHHHHhC-CCCcCcEEEEecChHHHH
Confidence 4777777666899999998764311 1110 0 22333 4478889999 332211123345566999
Q ss_pred HHHHHhhCCCCCEEEEcC-CCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-CCcEEEEcC
Q 010008 173 FEVYTAILKPHDRIMGLD-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGA 250 (520)
Q Consensus 173 ~~~l~all~pGD~Vl~~~-~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-~pklIi~~~ 250 (520)
..++.++++|||+|++++ +.|++.+. ..+...|. +++.++++ +++.+|++++++++++. ++++|++..
T Consensus 70 ~~~~~~~~~~gd~vi~~~~~~~~~~~~-------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~ 139 (366)
T 1m32_A 70 EAVLGSALGPQDKVLIVSNGAYGARMV-------EMAGLMGI--AHHAYDCG-EVARPDVQAIDAILNADPTISHIAMVH 139 (366)
T ss_dssp HHHHHHSCCTTCCEEEEESSHHHHHHH-------HHHHHHTC--CEEEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHhcCCCCeEEEEeCCCccHHHH-------HHHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhcCCCeEEEEEec
Confidence 999999999999988776 33332110 11223354 45556665 45779999999999874 588998887
Q ss_pred CCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008 251 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 327 (520)
Q Consensus 251 s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l 327 (520)
++||+ ..|+++|.++|+++|+++|+|++|..|....+... .++|++++|+||++.||.| |++++++ ++
T Consensus 140 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~---~~~di~~~s~~K~~~~~~g~G~~~~~~------~~ 210 (366)
T 1m32_A 140 SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAA---LHIDYLISSANKCIQGVPGFAFVIARE------QK 210 (366)
T ss_dssp EETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTT---TTCSEEEEESSSTTCCCSSEEEEEEEH------HH
T ss_pred ccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccc---cCccEEEecCcccccCCCceEEEEECH------HH
Confidence 77765 78999999999999999999999876644222111 1479999999999988877 9999998 56
Q ss_pred HHhhcccCC-----------------CCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008 328 ESAINNAVF-----------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLV 389 (520)
Q Consensus 328 ~~~i~~~~~-----------------p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v~ 389 (520)
.+++..... ....++++...++++..+++.....+ +++..+++.++++++.+.|.+.|+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 290 (366)
T 1m32_A 211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTL 290 (366)
T ss_dssp HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeec
Confidence 555543210 01124566677777777777654333 677888999999999999988888765
Q ss_pred cCC--CCCeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 390 SGG--SDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 390 ~~g--t~~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
.+. ..++++++++.. .+.+..++.+.|.+.||.+.. |. .+.++++|++.+..+ +++|++++++.|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~----~~--~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~ 360 (366)
T 1m32_A 291 LDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYP----GK--VSQSDCFRIGNIGEV----YAADITALLTAIRT 360 (366)
T ss_dssp SCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEE----CC--CSSSCEEEEECCSSC----CHHHHHHHHHHHHH
T ss_pred cCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEEC----Cc--CCCCCEEEEecCCCC----CHHHHHHHHHHHHH
Confidence 431 123466777642 145778888888888999853 32 124678999987554 48999999999987
Q ss_pred HHH
Q 010008 467 GVE 469 (520)
Q Consensus 467 ~l~ 469 (520)
+++
T Consensus 361 ~~~ 363 (366)
T 1m32_A 361 AMY 363 (366)
T ss_dssp HCT
T ss_pred HHH
Confidence 653
No 28
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.95 E-value=1.3e-26 Score=239.94 Aligned_cols=358 Identities=13% Similarity=0.068 Sum_probs=238.0
Q ss_pred ccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008 74 LGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 151 (520)
Q Consensus 74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l 151 (520)
+....+..+..+.+..++..+.|+|..+++. .++.|.+++...+.+. ..+|+. .....++++...+++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~g~~~l~~~la~~~~~~ 79 (389)
T 1gd9_A 7 LELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKG-LTHYGP------NIGLLELREAIAEKLKKQ 79 (389)
T ss_dssp HHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCC------TTCCHHHHHHHHHHHHHH
T ss_pred hHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCC-CCCCCC------CCCcHHHHHHHHHHHHHH
Confidence 3344444443333333333467888877753 5789999998887543 123432 112346666666777777
Q ss_pred cCC--CCCCCceeeecCCh-HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CC
Q 010008 152 FNL--DENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TG 227 (520)
Q Consensus 152 fg~--~~~~~~~~V~~~sG-s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~ 227 (520)
+|. ++++ .|.+++| ++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++
T Consensus 80 ~g~~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~ 146 (389)
T 1gd9_A 80 NGIEADPKT---EIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGG--KPVEVPTYEEDEF 146 (389)
T ss_dssp HCCCCCTTT---SEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTC--EEEEEECCGGGTT
T ss_pred hCCCCCCCC---eEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCCccCC
Confidence 785 4542 0344555 599999999999999999999998865421 2334454 5666666542 46
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc-cCC--CC---Ccc
Q 010008 228 LVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PF---KYC 296 (520)
Q Consensus 228 ~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~--p~---~~a 296 (520)
.+|++++++++++ ++++|+++.++||+ .. ++++|+++|+++|+++|+|++|..+. ..+. ..+ .+ ...
T Consensus 147 ~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~~ 224 (389)
T 1gd9_A 147 RLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI-YDDARHYSIASLDGMFER 224 (389)
T ss_dssp CCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB-CTTCCCCCGGGSTTCGGG
T ss_pred CCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcc-cCCCCCCCHhhccCCCCC
Confidence 7899999999987 89999988888876 44 58999999999999999999976543 2221 111 11 246
Q ss_pred cEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Q 010008 297 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSN 373 (520)
Q Consensus 297 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~n 373 (520)
|++++|+||++ +|.|.|++++++ ++.+.+.........+. +....+++..+|+..... .+++..+++.++
T Consensus 225 ~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 297 (389)
T 1gd9_A 225 TITVNGFSKTFAMTGWRLGFVAAPS------WIIERMVKFQMYNATCP-VTFIQYAAAKALKDERSWKAVEEMRKEYDRR 297 (389)
T ss_dssp EEEEEESTTTTTCGGGCCEEEECCH------HHHHHHHHHHTTTTCSC-CHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecChhhcCCcccceEEEEECH------HHHHHHHHHHhhhccCC-CHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 89999999997 467789999987 67766654333222233 333444444455432111 346677888899
Q ss_pred HHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCC
Q 010008 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF 452 (520)
Q Consensus 374 a~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~ 452 (520)
++.+.+.|.+.|+++..+. .+.++++++...+.+..++.+.|. ++||.+..+..++ +..++++||++..
T Consensus 298 ~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRi~~~~------ 367 (389)
T 1gd9_A 298 RKLVWKRLNEMGLPTVKPK-GAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFG---KAGEGYVRISYAT------ 367 (389)
T ss_dssp HHHHHHHHHHTTCCCCCCC-BTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGC---GGGTTBEEEECCS------
T ss_pred HHHHHHHHHHcCCeecCCC-eeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhC---CCCCCeEEEEecC------
Confidence 9999999988888776532 344566676533557777777775 8999985432221 1135789999652
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 010008 453 SEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 453 ~~~d~~~la~~i~~~l~~ 470 (520)
++++++++++.|.++++.
T Consensus 368 ~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 368 AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 579999999999888753
No 29
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.95 E-value=9.9e-27 Score=240.72 Aligned_cols=330 Identities=13% Similarity=0.091 Sum_probs=229.8
Q ss_pred ceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008 96 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 174 (520)
Q Consensus 96 i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~ 174 (520)
+.|. ++...+++.|++++...+.+. +++ .. .......++++++++|+++++ .+.+.+|++|+.+
T Consensus 10 ~yl~~~~~~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~l~~~la~~~g~~~~~---v~~t~g~t~a~~~ 74 (392)
T 2z9v_A 10 VITLTAGPVNAYPEVLRGLGRTVLYD--------YDP---AF-QLLYEKVVDKAQKAMRLSNKP---VILHGEPVLGLEA 74 (392)
T ss_dssp SEECSSSCCCCCHHHHHHTTSCCCCT--------TSH---HH-HHHHHHHHHHHHHHTTCSSCC---EEESSCTHHHHHH
T ss_pred ceeecCCCcCCCHHHHHHHhcccccc--------ccH---HH-HHHHHHHHHHHHHHhCCCCCE---EEEeCCchHHHHH
Confidence 4444 344578999999998766431 111 11 122234568899999997642 2334556699999
Q ss_pred HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh-cCCcEEEEcCCCC
Q 010008 175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAY 253 (520)
Q Consensus 175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-~~pklIi~~~s~~ 253 (520)
++.++++|||+|+++++.|.++. +. ......|. +++.+++++ ++.+|+++++++++. .++++|++++++|
T Consensus 75 ~~~~~~~~gd~Vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~n 145 (392)
T 2z9v_A 75 AAASLISPDDVVLNLASGVYGKG---FG---YWAKRYSP--HLLEIEVPY-NEAIDPQAVADMLKAHPEITVVSVCHHDT 145 (392)
T ss_dssp HHHHHCCTTCCEEEEESSHHHHH---HH---HHHHHHCS--CEEEEECCT-TSCCCHHHHHHHHHHCTTCCEEEEESEEG
T ss_pred HHHHhcCCCCEEEEecCCcccHH---HH---HHHHHcCC--ceEEeeCCC-CCCCCHHHHHHHHhcCCCCcEEEEeccCC
Confidence 99999999999999998764431 10 01122344 556666663 467999999999953 2789999988888
Q ss_pred CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHH
Q 010008 254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 328 (520)
Q Consensus 254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~ 328 (520)
|+ ..|+++|.++|+++|+++++|++|..|.... ++. ++|++++|+||++.||.| |++++++ ++.
T Consensus 146 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~------~~~ 214 (392)
T 2z9v_A 146 PSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKT-----HPEDCKADIYVTGPNKCLGAPPGLTMMGVSE------RAW 214 (392)
T ss_dssp GGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSC-----CGGGGTCSEEEECSSSTTCCCSCCEEEEECH------HHH
T ss_pred CCceeccHHHHHHHHHHcCCeEEEEcccccCCccc-----ccccccceEEEecCcccccCCCceeEEEECH------HHH
Confidence 75 7899999999999999999999987654322 122 479999999999988776 9999987 555
Q ss_pred HhhcccC-------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008 329 SAINNAV-------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV 389 (520)
Q Consensus 329 ~~i~~~~-------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~ 389 (520)
+++.... .....++++...++++..+++.....++++..+++.++++++.+.|.+.|+++.
T Consensus 215 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~ 294 (392)
T 2z9v_A 215 AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVW 294 (392)
T ss_dssp HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence 5543210 011245677777777777777654434677888999999999999988888776
Q ss_pred c-CC--CCCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCC-ccccCCCHHHHHHHHHHH
Q 010008 390 S-GG--SDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPA-MTTRGFSEKEFVAIADFI 464 (520)
Q Consensus 390 ~-~g--t~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~-~tt~g~~~~d~~~la~~i 464 (520)
. +. ...+++++.+. .+.+..++.+.|.+. ||.+..+.. +..++++||++.. . .+++|++++++.|
T Consensus 295 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~~-----~~~~~~lRi~~~~~~----~~~~~i~~~~~~l 364 (392)
T 2z9v_A 295 AASDSIASPTTTAVRTP-DGVDEKALRQAARARYGVVFSSGRG-----ETLGKLTRIGHMGPT----AQPIYAIAALTAL 364 (392)
T ss_dssp SSSGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECEECCG-----GGTTTEEEEECCGGG----CSHHHHHHHHHHH
T ss_pred cCCccccCCceEEEECC-CCCCHHHHHHHHHhcCCEEEecCCC-----CCCCCeEEEeCcccc----cCHHHHHHHHHHH
Confidence 5 21 12455566653 356777888888775 999854321 1235789999532 2 3489999999999
Q ss_pred HHHHHH
Q 010008 465 HEGVEI 470 (520)
Q Consensus 465 ~~~l~~ 470 (520)
+++++.
T Consensus 365 ~~~~~~ 370 (392)
T 2z9v_A 365 GGAMNA 370 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 30
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.95 E-value=2.5e-26 Score=238.07 Aligned_cols=331 Identities=12% Similarity=0.060 Sum_probs=229.5
Q ss_pred ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC-hHHHHHH
Q 010008 96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFE 174 (520)
Q Consensus 96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s-Gs~A~~~ 174 (520)
+.+.++...+++.|++++...+.+.| ..+.+......++.+++++|++++. +|.+++ |++|+.+
T Consensus 20 ~~~~~~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~~---~v~~~~g~t~al~~ 84 (396)
T 2ch1_A 20 IMMGPGPSNCSKRVLTAMTNTVLSNF------------HAELFRTMDEVKDGLRYIFQTENRA---TMCVSGSAHAGMEA 84 (396)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHhccccccCC------------ChhHHHHHHHHHHHHHHHhCCCCCc---EEEECCcHHHHHHH
Confidence 44444555678999999876553322 1122232334568899999998751 343445 5599999
Q ss_pred HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008 175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 254 (520)
Q Consensus 175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p 254 (520)
++.++++|||+|+++++.|.++... ..+...|. +++.++++ +++.+|++++++++++.++++|+++.++||
T Consensus 85 ~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~np 155 (396)
T 2ch1_A 85 MLSNLLEEGDRVLIAVNGIWAERAV------EMSERYGA--DVRTIEGP-PDRPFSLETLARAIELHQPKCLFLTHGDSS 155 (396)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHHHH------HHHHHTTC--EEEEEECC-TTSCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHHhcCCCCeEEEEcCCcccHHHH------HHHHHcCC--ceEEecCC-CCCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 9999999999999999877553100 01233454 56666666 357899999999997657999999888887
Q ss_pred C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008 255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 329 (520)
Q Consensus 255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~ 329 (520)
+ ..|+++|.++|+++|+++|+|++|..|... ..+. ++|++++|+||++.|+.| |++++++ ++.+
T Consensus 156 tG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~-----~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~ 224 (396)
T 2ch1_A 156 SGLLQPLEGVGQICHQHDCLLIVDAVASLCGVP-----FYMDKWEIDAVYTGAQKVLGAPPGITPISISP------KALD 224 (396)
T ss_dssp TTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC-----CCTTTTTCCEEECCCC-CCCCCSSCEEEEECH------HHHH
T ss_pred CceecCHHHHHHHHHHcCCEEEEEccccccCCc-----cchhhcCcCEEEEcCCccccCCCCeEEEEECH------HHHH
Confidence 6 778999999999999999999998765332 1222 479999999999887766 8999887 4544
Q ss_pred hhccc-------C---------C------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE
Q 010008 330 AINNA-------V---------F------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK 387 (520)
Q Consensus 330 ~i~~~-------~---------~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~ 387 (520)
.+... . + ....++++...++++..+++.....++++..+++.++++.+.+.|.+.|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 304 (396)
T 2ch1_A 225 VIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLD 304 (396)
T ss_dssp HHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 43211 0 0 112355666666666667776543456788889999999999999888888
Q ss_pred EecCCC---CCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008 388 LVSGGS---DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 463 (520)
Q Consensus 388 v~~~gt---~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~ 463 (520)
++.+.. ..+++++.+. .+.+..++.+.|.+ .||.+..+.. +..++++||++...+ .+++|++++++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~---~~~e~i~~~~~~ 375 (396)
T 2ch1_A 305 IFVKDPRHRLPTVTGIMIP-KGVDWWKVSQYAMNNFSLEVQGGLG-----PTFGKAWRVGIMGEC---STVQKIQFYLYG 375 (396)
T ss_dssp BSSCSGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCBCCBCCCG-----GGTTTEEEEECCGGG---CSHHHHHHHHHH
T ss_pred eccCCccccCCceEEEEcC-CCCCHHHHHHHHHHhCCEEEecCcc-----ccCCCEEEEECCCCc---CCHHHHHHHHHH
Confidence 765421 1135566653 35677788777755 6999854321 124578999973322 358999999999
Q ss_pred HHHHHHH
Q 010008 464 IHEGVEI 470 (520)
Q Consensus 464 i~~~l~~ 470 (520)
|+++++.
T Consensus 376 l~~~l~~ 382 (396)
T 2ch1_A 376 FKESLKA 382 (396)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 31
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.95 E-value=1.4e-26 Score=240.02 Aligned_cols=331 Identities=18% Similarity=0.133 Sum_probs=225.8
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs 169 (520)
+.|+|..+++. +++.+.+++...+.... .+|+.. .| ..++++...+++.+.+|++ ++ +|.+++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g---~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~g~ 100 (385)
T 1b5p_A 32 DLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP---AG---IPELREALAEKFRRENGLSVTPE----ETIVTVGG 100 (385)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT---TC---CHHHHHHHHHHHHHTTCCCCCGG----GEEEESHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC---CC---CHHHHHHHHHHHHHHhCCCCChH----HEEEcCCh
Confidence 56888777763 57889999887775432 234321 12 2455555667777777864 43 45567776
Q ss_pred -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEEE
Q 010008 170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklIi 247 (520)
+|+.+++.++++|||+|++++|.|.++. ..+...|. +++.+++++ +++.+|++++++++++ ++|+|+
T Consensus 101 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 169 (385)
T 1b5p_A 101 SQALFNLFQAILDPGDEVIVLSPYWVSYP--------EMVRFAGG--VVVEVETLPEEGFVPDPERVRRAITP-RTKALV 169 (385)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHH--------HHHHHTTC--EEEEEECCGGGTTCCCHHHHHTTCCT-TEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCchhHH--------HHHHHcCC--EEEEeecCcccCCCCCHHHHHHhcCC-CCEEEE
Confidence 9999999999999999999999875432 12334565 666677764 3568999999999987 799999
Q ss_pred EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc--CCCCceEEE
Q 010008 248 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL--RGPRGGMIF 316 (520)
Q Consensus 248 ~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l--~GprgG~I~ 316 (520)
+++++||+ .++ +++|.++|+++|++||+|++|. .+...+ ...++. ..++++.|+||++ +|.|.|+++
T Consensus 170 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~ 247 (385)
T 1b5p_A 170 VNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYE-HLLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYAC 247 (385)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSS-CCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccch-hcccCC-CCCCHHHcCCCCEEEEEechhhcCCcccceEEEE
Confidence 98899987 444 8899999999999999999964 344333 111221 3468899999987 578899999
Q ss_pred eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH---hcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008 317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH---AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 393 (520)
Q Consensus 317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~---~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt 393 (520)
+++ ++.+.+......+..+.+...+.+ ...+|+. . ....++..+++.++++.+.+.|.+.|+.+..+ .
T Consensus 248 ~~~------~~~~~l~~~~~~~~~~~~~~~~~a-~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~ 318 (385)
T 1b5p_A 248 GPK------EVIKAMASVSRQSTTSPDTIAQWA-TLEALTNQEAS-RAFVEMAREAYRRRRDLLLEGLTALGLKAVRP-S 318 (385)
T ss_dssp CCH------HHHHHHHHHHHTTTCSCCHHHHHH-HHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-S
T ss_pred eCH------HHHHHHHHHHhhccCCCCHHHHHH-HHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-C
Confidence 977 666666543323323333333333 3335542 1 12346677888888999999998878876554 2
Q ss_pred CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
.+++.|+++...+.+..++.+.|.+.||.+.. |.... .++++||++. .+++++++..+.|.+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~----g~~f~-~~~~iRis~~------~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 319 GAFYVLMDTSPIAPDEVRAAERLLEAGVAVVP----GTDFA-AFGHVRLSYA------TSEENLRKALERFARVL 382 (385)
T ss_dssp BTTEEEEECTTTCSSHHHHHHHHHHTTEECEE----SGGGT-CTTEEEEECC------SCHHHHHHHHHHGGGGC
T ss_pred eeEEEEEecCCCCCCHHHHHHHHHHCCeEEec----ccccC-CCCeEEEEec------CCHHHHHHHHHHHHHHH
Confidence 34556777754456777788888899999854 32211 1578999964 34788888777776554
No 32
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.95 E-value=5.7e-27 Score=241.96 Aligned_cols=337 Identities=15% Similarity=0.097 Sum_probs=230.8
Q ss_pred ccceEecCC-CCChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008 94 KSLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 171 (520)
Q Consensus 94 ~~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A 171 (520)
+.+.|..+. .+.|+.|++++...+.+.. ...+.. +.|.. +. ......++.+++++|++++++ +...+|++|
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~y~~--~~-~~~~~l~~~la~~~g~~~~~v---~~~~g~t~a 88 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQ-ENGPFSIAANQH--IQ-QLIAQLRQALAETFNVDPNTI---TITDNVTTG 88 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHH-HHCSSSHHHHHH--HH-HHHHHHHHHHHHHTTSCGGGE---EEESSHHHH
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHh-ccCCcchhhHHH--HH-HHHHHHHHHHHHHcCCCHHHE---EEeCChHHH
Confidence 346665443 3567889999988876432 111110 01111 11 222345578999999987532 334556699
Q ss_pred HHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 172 NFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 172 ~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
+.+++.++ ++|||+|+++++.|.++..... ......|. +++.+++++ +++.+|++++++.+++ ++++|+++
T Consensus 89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 161 (390)
T 1elu_A 89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQ----AIAARFGI--TYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILS 161 (390)
T ss_dssp HHHHHHHSCCCTTCEEEEETTCCHHHHHHHH----HHHHHHCC--EEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEE
T ss_pred HHHHHhCCCCCCCCEEEEecCcccHHHHHHH----HHHHHhCc--EEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEe
Confidence 99999999 8999999999998765421100 00122344 566666643 3578999999999987 89999999
Q ss_pred CCCCCC--CCCHHHHHHHHH----HhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCc
Q 010008 250 ASAYPR--DFDYPRMRQIAD----AVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV 322 (520)
Q Consensus 250 ~s~~p~--~~d~~~i~~ia~----~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~ 322 (520)
.++||+ ..|+++|.++|+ ++|+++|+|++|..|....+... .+.|++++|+||++.|+.| |++++++
T Consensus 162 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~---~~~d~~~~s~~K~~~~~~g~G~~~~~~--- 235 (390)
T 1elu_A 162 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSR---LEVDYYAFTGHKWFAGPAGVGGLYIHG--- 235 (390)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTT---SCCSEEEEESSSTTCCCTTCEEEEECT---
T ss_pred ccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhh---cCCCEEEccccccccCCCceEEEEECH---
Confidence 888876 789999999999 99999999999986643222111 1579999999998766665 9999987
Q ss_pred chhhHHHhhcccCC---------------------CCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHH
Q 010008 323 LGVELESAINNAVF---------------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASR 380 (520)
Q Consensus 323 ~~~~l~~~i~~~~~---------------------p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~ 380 (520)
++.+++..... ....++++...++++..+++.+...+ +++..+++.++++.+.+.
T Consensus 236 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~ 312 (390)
T 1elu_A 236 ---DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG 312 (390)
T ss_dssp ---TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred ---HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45555443211 01135666666666666777554334 678889999999999999
Q ss_pred HHHC-CCEEecC-CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008 381 LVEL-GYKLVSG-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV 458 (520)
Q Consensus 381 L~~~-G~~v~~~-gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~ 458 (520)
|.+. |++++.+ .....++++++. .+.+..++.+.|.+.||.+.. |. .++++||+++..+ +++|++
T Consensus 313 L~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~----~~----~~~~iRis~~~~~----~~~~i~ 379 (390)
T 1elu_A 313 LNQLPHVHCLATSAPQAGLVSFTVD-SPLGHRAIVQKLEEQRIYLRT----IA----DPDCIRACCHYIT----DEEEIN 379 (390)
T ss_dssp HHHSTTEEESCSSCCSSSEEEEEEC-SSSCHHHHHHHHHHTTEECEE----ET----TTTEEEEECCTTC----CHHHHH
T ss_pred HHhcCCcEEecCccccccEEEEEcC-CCCCHHHHHHHHHHCCEEEEe----cC----CCCeEEEecccCC----CHHHHH
Confidence 9885 8888753 123456666774 355778888888899999853 32 2578999975443 489999
Q ss_pred HHHHHHHH
Q 010008 459 AIADFIHE 466 (520)
Q Consensus 459 ~la~~i~~ 466 (520)
++++.|++
T Consensus 380 ~~~~~l~~ 387 (390)
T 1elu_A 380 HLLARLAD 387 (390)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988764
No 33
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.95 E-value=6.7e-27 Score=241.74 Aligned_cols=337 Identities=15% Similarity=0.130 Sum_probs=233.3
Q ss_pred ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCCh-
Q 010008 94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG- 168 (520)
Q Consensus 94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG- 168 (520)
+.|+|..+++ +.++.|++++...+.+. ..+|+.. ..++++.+++++++.+| ++++ +|.+++|
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~----~i~~~~g~ 94 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEEKLKVA-AFGYESV--------PAEYYKAVADWEEIEHRARPKED----WCVFASGV 94 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHHHHTTC-CCCCBCC--------CHHHHHHHHHHHHHHHSCCCCGG----GEEEESCH
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhcC-cCCCCCC--------CHHHHHHHHHHHHHHhCCCCCHH----HEEECCCH
Confidence 5678877664 36899999999887653 2233321 24566667788999999 4454 4455666
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--CCCCCCCHHHHHHHhhhcCCcEE
Q 010008 169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--~~~~~iD~d~le~~i~~~~pklI 246 (520)
++|+.+++.++++|||+|++.++.|.++.. .+...|. +++.++++ ..++.+|+++|+++++..++++|
T Consensus 95 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v 164 (391)
T 3dzz_A 95 VPAISAMVRQFTSPGDQILVQEPVYNMFYS--------VIEGNGR--RVISSDLIYENSKYSVNWADLEEKLATPSVRMM 164 (391)
T ss_dssp HHHHHHHHHHHSCTTCEEEECSSCCHHHHH--------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHhCCCCCeEEECCCCcHHHHH--------HHHHcCC--EEEEeeeeecCCceeecHHHHHHHHhccCceEE
Confidence 599999999999999999999998765421 2334454 66677664 22345999999999984489999
Q ss_pred EEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----ccc--EEEeccCccc--CCCCc
Q 010008 247 IAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD--VVTTTTHKSL--RGPRG 312 (520)
Q Consensus 247 i~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aD--iv~~S~hK~l--~Gprg 312 (520)
++..++||+ . .++++|+++|+++|++||+|++|. ++...+....++. +.| +++.|+||++ +|+|.
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~ 243 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHG-DLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA 243 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccc-cccCCCCCceehhhcCccccCcEEEEEeChhhccccchhh
Confidence 998888886 4 468899999999999999999975 3333332222221 256 8899999986 67888
Q ss_pred eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec
Q 010008 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS 390 (520)
Q Consensus 313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~ 390 (520)
|+++++++ ++.+.+..........+++...+++...+++.. ....++..+++.++++.+.+.|.+. |+.+..
T Consensus 244 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 317 (391)
T 3dzz_A 244 ACAIIPNP-----DLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD 317 (391)
T ss_dssp EEEECCSH-----HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred eEEEECCH-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 99999842 666665443211111123333444444566552 2234777888889999999999884 888875
Q ss_pred CCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 391 ~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+. .+.+.++++...+.+..++.+.| ++.||.+..+... +...++++||++. .++++++++++.|.++++
T Consensus 318 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~iRis~~------~~~~~i~~~l~~l~~~l~ 387 (391)
T 3dzz_A 318 SN-ASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGY---RGNGHEFVRINLA------CPKELVIDGMQRLKQGVL 387 (391)
T ss_dssp CC-BSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGG---CTTGGGEEEEECC------SCHHHHHHHHHHHHHHHH
T ss_pred cC-ceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhh---CCCCCCEEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 42 34556778765566788888888 5899999543211 1223578999865 347999999999988875
Q ss_pred H
Q 010008 470 I 470 (520)
Q Consensus 470 ~ 470 (520)
.
T Consensus 388 ~ 388 (391)
T 3dzz_A 388 N 388 (391)
T ss_dssp T
T ss_pred H
Confidence 3
No 34
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.95 E-value=5.3e-26 Score=233.98 Aligned_cols=342 Identities=18% Similarity=0.176 Sum_probs=229.7
Q ss_pred ceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHH
Q 010008 96 LELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANF 173 (520)
Q Consensus 96 i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~ 173 (520)
+.|..++ .++++.|++++...+.+.|. .|...+..+.... ......++++++++|+++++ |.++ +|++|+.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~l~~~la~~~g~~~~~----v~~~~g~t~a~~ 75 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYG--NPNSAHGMGIEAN-LHMEKAREKVAKVLGVSPSE----IFFTSCATESIN 75 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCC--CTTCSSHHHHHHH-HHHHHHHHHHHHHHTSCGGG----EEEESCHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHH-HHHHHHHHHHHHHcCCCCCe----EEEECCHHHHHH
Confidence 3454444 46899999999998876552 2322121111112 22234568899999988652 3344 4569999
Q ss_pred HHHHhhC----CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 174 EVYTAIL----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 174 ~~l~all----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
+++.++. +|||+|+++++.|.++.... ..+...|. +++.++++ +++.+|+++|++++++ ++++|+++
T Consensus 76 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 76 WILKTVAETFEKRKRTIITTPIEHKAVLETM-----KYLSMKGF--KVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp HHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-----HHHHHTTC--EEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred HHHHhhhhhccCCCCEEEECCCCchHHHHHH-----HHHHhcCC--EEEEEccC-CCCccCHHHHHHHhCC-CCeEEEEE
Confidence 9999987 89999999998775442111 01123454 67777776 4678999999999987 89999999
Q ss_pred CCCCCC--CCCHHHHHHHHHHhC--CEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcch
Q 010008 250 ASAYPR--DFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 324 (520)
Q Consensus 250 ~s~~p~--~~d~~~i~~ia~~~g--~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~ 324 (520)
.++||+ ..|+++|.++|+++| ++||+|++|..|....+... + ++|++++|+||++ ||.| |+++++++
T Consensus 147 ~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~--~-~~di~~~s~sK~~-g~~G~G~~~~~~~---- 218 (384)
T 1eg5_A 147 AANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEK--L-EVDYASFSAHKFH-GPKGVGITYIRKG---- 218 (384)
T ss_dssp SBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTT--T-CCSEEEEEGGGGT-SCTTCEEEEECTT----
T ss_pred CCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchh--c-CCCEEEecHHHhc-CCCceEEEEEcCC----
Confidence 888875 789999999999999 99999999875533211110 1 5899999999985 6665 99999883
Q ss_pred hhH--HHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC--CCCeeE
Q 010008 325 VEL--ESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG--SDNHLV 398 (520)
Q Consensus 325 ~~l--~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g--t~~~~~ 398 (520)
+ ...+.... .....++++...++++..+++... .++++..+++.++++.+.+.|.+.|++++.+. ....++
T Consensus 219 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 295 (384)
T 1eg5_A 219 --VPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTL 295 (384)
T ss_dssp --SCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEE
T ss_pred --CccccccccCcccccccCCCCChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEE
Confidence 3 11111100 011234566666766666777643 35678888999999999999988888886542 112334
Q ss_pred EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCC----------C----CCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008 399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS----------A----LVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464 (520)
Q Consensus 399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~----------~----~~~~giRig~~~~tt~g~~~~d~~~la~~i 464 (520)
.+.+. +.+..++.+.|.+.||.+..+...+... . ...+++||++...+ +++|++++++.|
T Consensus 296 ~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~----~~~~i~~~~~~l 369 (384)
T 1eg5_A 296 SVSFP--NIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYN----TEEEVDYFLKKI 369 (384)
T ss_dssp EEECT--TCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTC----CHHHHHHHHHHH
T ss_pred EEEeC--CCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCC----CHHHHHHHHHHH
Confidence 44443 4577888888999999996432110000 0 01368999976433 489999999999
Q ss_pred HHHHHH
Q 010008 465 HEGVEI 470 (520)
Q Consensus 465 ~~~l~~ 470 (520)
+++++.
T Consensus 370 ~~~~~~ 375 (384)
T 1eg5_A 370 EEILSF 375 (384)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 35
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.95 E-value=2.1e-26 Score=236.95 Aligned_cols=331 Identities=14% Similarity=0.150 Sum_probs=230.1
Q ss_pred CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHHHHHHhhC-
Q 010008 103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAIL- 180 (520)
Q Consensus 103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~~~l~all- 180 (520)
.++++.|++++...+.+.+ +.|+..|..+.... ......++++++++|++++ +|..+ +|++|+.+++.++.
T Consensus 10 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a~~~~~~~l~~ 82 (382)
T 4eb5_A 10 KPVDERILEAMLPYMTESF--GNPSSVHSYGFKAR-EAVQEAREKVAKLVNGGGG----TVVFTSGATEANNLAIIGYAM 82 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHHHH-HHHHHHHHHHHHHHTCTTE----EEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcc--CCCCCCcHHHHHHH-HHHHHHHHHHHHHhCCCCC----eEEEcCchHHHHHHHHHHHHh
Confidence 4789999999998887543 44443343222222 2333466889999999864 33344 55699999999987
Q ss_pred ---CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--
Q 010008 181 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-- 255 (520)
Q Consensus 181 ---~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-- 255 (520)
+|||+|+++++.|.+..... ..+...|. +++.++++ +++.+|+++|++++++ ++++|++++++||+
T Consensus 83 ~~~~~gd~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 153 (382)
T 4eb5_A 83 RNARKGKHILVSAVEHMSVINPA-----KFLQKQGF--EVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEIGT 153 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHHH-----HHHTTTTC--EEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCB
T ss_pred hccCCCCEEEECCCcchHHHHHH-----HHHHhCCc--EEEEeccC-CCCccCHHHHHHHhcC-CCeEEEEeccCCCccc
Confidence 89999999998875442111 01112354 67777776 4678999999999987 89999998888876
Q ss_pred CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008 256 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN 332 (520)
Q Consensus 256 ~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~ 332 (520)
..|+++|.++|+++|++ |+|++|..|... .++. ++|++++|+||+ .||.| |+++++++ . .+.
T Consensus 154 ~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~-----~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~------~--~l~ 218 (382)
T 4eb5_A 154 IQPVEEISEVLAGKAAL-HIDATASVGQIE-----VDVEKIGADMLTISSNDI-YGPKGVGALWIRKE------A--KLQ 218 (382)
T ss_dssp BCCHHHHHHHHTTSSEE-EEECTTTBTTBC-----CCHHHHTCSEEEEETGGG-TCCSSCEEEEEETT------C--CCC
T ss_pred cCCHHHHHHHHHHCCCE-EEEcchhcCCcc-----cCccccCCCEEEeehHHh-cCCCceEEEEEccc------c--ccC
Confidence 78999999999999999 999998765332 1122 579999999997 56765 99999874 1 122
Q ss_pred ccCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC--CCeeEEEEec
Q 010008 333 NAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS--DNHLVLVDLR 403 (520)
Q Consensus 333 ~~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt--~~~~~~vd~~ 403 (520)
.... ....++++...++++..+++.+. .++++..+++.++++.+.+.|.+. |+++..+.. ..+++++.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T 4eb5_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS 297 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET
T ss_pred ceecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC
Confidence 1111 11235667777777777777654 356778888999999999999875 887765321 1345566654
Q ss_pred CCCCCHHHHHHHHhhcCeEEcCCCC--CCCC---------C---CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 404 PMGIDGARVEKILDMASITLNKNSV--PGDK---------S---ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 404 ~~g~~~~~~~~~L~~~gI~v~~~~~--Pg~~---------~---~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+.+..++.+.|.+.||.+..+.. ++.. + ...++.+||++...+ +++|++++++.|+++++
T Consensus 298 --~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~ 371 (382)
T 4eb5_A 298 --YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYN----TDEDVDRLLEVLPGVIE 371 (382)
T ss_dssp --TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTC----CHHHHHHHHHHHHHHHH
T ss_pred --CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCC----CHHHHHHHHHHHHHHHH
Confidence 45778888888899999865321 1000 0 012478999976443 48999999999999886
Q ss_pred HH
Q 010008 470 IT 471 (520)
Q Consensus 470 ~~ 471 (520)
..
T Consensus 372 ~~ 373 (382)
T 4eb5_A 372 RL 373 (382)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 36
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.95 E-value=1.2e-25 Score=241.61 Aligned_cols=340 Identities=13% Similarity=0.029 Sum_probs=238.5
Q ss_pred CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChHHHHHHHHHhhC
Q 010008 103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAIL 180 (520)
Q Consensus 103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs~A~~~~l~all 180 (520)
.++++.+.+++.+.+...+. . +...+...++|+.+++++++++|++ +++....+.+++|++||+.++.++.
T Consensus 66 ~~~~~~v~~~l~~~~~~~~~--~-----~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~ 138 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNYV--D-----MDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK 138 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBTT--C-----TTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCCC--C-----hhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH
Confidence 45789999999988765432 1 1223446789999999999999998 5444333445677799999888876
Q ss_pred CC--------CC-----EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008 181 KP--------HD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 181 ~p--------GD-----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi 247 (520)
++ || +|++.++.|.+.. +.+...|. +++.++++++++.+|+++|++++++ +|++|+
T Consensus 139 ~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~--------~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~ 207 (502)
T 3hbx_A 139 RKWQNKRKAEGKPVDKPNIVTGANVQVCWE--------KFARYFEV--ELKEVKLSEGYYVMDPQQAVDMVDE-NTICVA 207 (502)
T ss_dssp HHHHHHHHHTTCCCSCCEEEEETTCCHHHH--------HHHHHTTC--EEEEECCBTTBCSCCHHHHHHHCCT-TEEEEE
T ss_pred HHHhHHHHhcCCCCCCcEEEEcCCchHHHH--------HHHHHcCc--eeEEEecCCCcCcCCHHHHHHHHhh-CCEEEE
Confidence 55 87 8998887654321 23345565 5666667754589999999999988 899998
Q ss_pred EcCCCCCC--CCCHHHHHHHHHHh------CCEEEEechhhccccc--ccccCCC--CCcccEEEeccCcccCCCCc-eE
Q 010008 248 AGASAYPR--DFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVADP--FKYCDVVTTTTHKSLRGPRG-GM 314 (520)
Q Consensus 248 ~~~s~~p~--~~d~~~i~~ia~~~------g~~li~D~Ah~~gli~--~~~~~~p--~~~aDiv~~S~hK~l~Gprg-G~ 314 (520)
+..++|++ ..|+++|.++|+++ |++|++|+||..+... .+..+.. ..++|++++++||++.+|.| |+
T Consensus 208 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~ 287 (502)
T 3hbx_A 208 AILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGW 287 (502)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred EecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEE
Confidence 88777765 78999999999999 9999999998644321 1211222 23799999999999977666 88
Q ss_pred EEeeCCCcchhhHH-Hhhcc--cCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC
Q 010008 315 IFFKKDPVLGVELE-SAINN--AVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG 385 (520)
Q Consensus 315 I~~~~~~~~~~~l~-~~i~~--~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G 385 (520)
++++++ +.. +.+.. ... ..+.++.....++++..++..+...++.++.++..+++++|.+.|.+.|
T Consensus 288 ~~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~ 362 (502)
T 3hbx_A 288 VIWRNK-----EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTE 362 (502)
T ss_dssp EEESSG-----GGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEeCH-----HHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888763 222 11110 100 1112344444556666677765556778889999999999999999865
Q ss_pred -CEEecCCCCCeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008 386 -YKLVSGGSDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 463 (520)
Q Consensus 386 -~~v~~~gt~~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~ 463 (520)
++++.++...+++.+.+.. .+++...+.+.|.+.||.+.....|.. ......+||++... .+++|++.+.+.
T Consensus 363 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~--~~~~~~lRisv~~~----~t~edid~li~~ 436 (502)
T 3hbx_A 363 RFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPN--AQHITVLRVVIRED----FSRTLAERLVID 436 (502)
T ss_dssp CEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTT--CTTCEEEEEECCTT----CCHHHHHHHHHH
T ss_pred CEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcc--cCCceEEEEEeCCC----CCHHHHHHHHHH
Confidence 8887652345566666653 235667899999999999754333322 12346799997654 458999999999
Q ss_pred HHHHHHHH
Q 010008 464 IHEGVEIT 471 (520)
Q Consensus 464 i~~~l~~~ 471 (520)
|+++++..
T Consensus 437 L~~~l~~l 444 (502)
T 3hbx_A 437 IEKVMREL 444 (502)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 37
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.95 E-value=3.8e-26 Score=238.95 Aligned_cols=348 Identities=14% Similarity=0.128 Sum_probs=235.9
Q ss_pred hhccceEecCC-CCChHHHHHHHhhhhh--ccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008 92 QFKSLELIASE-NFTSRAVMEAVGSCLT--NKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS 167 (520)
Q Consensus 92 ~~~~i~Liase-n~~~~~V~ea~~s~l~--~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s 167 (520)
..+.+.|..+. .++++.|++++...+. +.| ++|.. .|..+.. .......+++++++++|++++++ +...+
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~v---~~~~g 93 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFGWQ-AEEAVDIARNQIADLVGADPREI---VFTSG 93 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHHHH-HHHHHHHHHHHHHHHHTCCGGGE---EEESS
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchhHH-HHHHHHHHHHHHHHHcCCCCCeE---EEeCC
Confidence 34667776544 4789999999998887 554 44543 2222222 23334456689999999987532 23345
Q ss_pred hHHHHHHHHHhhCC----CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCC
Q 010008 168 GSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP 243 (520)
Q Consensus 168 Gs~A~~~~l~all~----pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~p 243 (520)
|++|+.+++.++++ |||+|+++++.|.+...... .+...|. +++.+++++ ++.+|+++|++++++ ++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~ 164 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-----QLEREGF--EVTYLAPQR-NGIIDLKELEAAMRD-DT 164 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHH-----HHHHTTC--EEEEECCCT-TSCCCHHHHHHHCCT-TE
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHH-----HHHHcCC--EEEEeccCC-CCccCHHHHHHhcCC-Cc
Confidence 56999999988874 89999999988765421110 1122354 666777763 688999999999987 89
Q ss_pred cEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCC
Q 010008 244 KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP 321 (520)
Q Consensus 244 klIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~ 321 (520)
++|+++.++||+ ..|+++|+++|+++|++||+|++|..|....+... .++|++++|+||++.++..|+++++++
T Consensus 165 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~---~~~di~~~s~sK~~g~~g~G~~~~~~~- 240 (423)
T 3lvm_A 165 ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQ---LKVDLMSFSGHKIYGPKGIGALYVRRK- 240 (423)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTT---SCCSEEEEESTTTTSCSSCEEEEECBT-
T ss_pred EEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhh---cCCCEEEechHHhcCCCCeEEEEEecc-
Confidence 999998888776 78999999999999999999999876644221111 157999999999654333599999873
Q ss_pred cchhhHHHhhcccCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC-
Q 010008 322 VLGVELESAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS- 393 (520)
Q Consensus 322 ~~~~~l~~~i~~~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt- 393 (520)
....+..... ....++++...++++..+++.+. ..+++..+++.++++.+.+.|.+. |+.+..+..
T Consensus 241 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 314 (423)
T 3lvm_A 241 -----PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH 314 (423)
T ss_dssp -----TBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT
T ss_pred -----ccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc
Confidence 3333433222 12245667777777777777654 236778888999999999999875 888875421
Q ss_pred -CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC--CCCCC------------CCCCCEEEEccCCccccCCCHHHHH
Q 010008 394 -DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV--PGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFV 458 (520)
Q Consensus 394 -~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~--Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~ 458 (520)
..+++.+.+ .+.+..++.+.|.+ |.+..+.. |+... ...++.|||+++.. .+++|++
T Consensus 315 ~~~~~~~~~~--~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~t~e~i~ 386 (423)
T 3lvm_A 315 GAPNILNVSF--NYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF----TTEEEID 386 (423)
T ss_dssp BCTTEEEEEE--TTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTT----CCHHHHH
T ss_pred cCCCeEEEEe--CCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCC----CCHHHHH
Confidence 123444444 35577888888877 77654321 10000 00137899997644 4589999
Q ss_pred HHHHHHHHHHHHHH
Q 010008 459 AIADFIHEGVEITL 472 (520)
Q Consensus 459 ~la~~i~~~l~~~~ 472 (520)
++++.|+++++...
T Consensus 387 ~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 387 YTIELVRKSIGRLR 400 (423)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 38
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.95 E-value=2e-26 Score=239.56 Aligned_cols=334 Identities=17% Similarity=0.198 Sum_probs=232.4
Q ss_pred ccceEecCCCC---ChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 94 KSLELIASENF---TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen~---~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
..|++..+... .++.|++++...+.. |..++.+.+|..| .+..+++ ++.+++++|++ + +|.+++|+
T Consensus 46 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~-~----~i~~~sGs 115 (401)
T 1fc4_A 46 HVINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKEL----EQKLAAFLGME-D----AILYSSCF 115 (401)
T ss_dssp EEEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHHH----HHHHHHHHTCS-E----EEEESCHH
T ss_pred cEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCCCcccCCcHHHHHH----HHHHHHHhCCC-c----EEEeCChH
Confidence 34677666322 379999999888753 4344443344322 3334444 47788899987 3 46679999
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCc
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPK 244 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pk 244 (520)
+|+..++.++++|||+|++.++.|++++. .+...|. +++.++ .+|++++++++++. +++
T Consensus 116 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~~ 179 (401)
T 1fc4_A 116 DANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKA--KRYRYA------NNDMQELEARLKEAREAGARHV 179 (401)
T ss_dssp HHHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHTSCS--EEEEEC------TTCHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHHcCCCCEEEEcchhHHHHHH--------HHHHcCC--ceEEEC------CCCHHHHHHHHHHhhccCCCce
Confidence 99999999999999999999987765431 2334454 555544 25889999988753 689
Q ss_pred EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccc-cccc-C--CCC-CcccEEEeccCcccCCCCceEEEe
Q 010008 245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-A--DPF-KYCDVVTTTTHKSLRGPRGGMIFF 317 (520)
Q Consensus 245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~-~~~~-~--~p~-~~aDiv~~S~hK~l~GprgG~I~~ 317 (520)
+|+++.++||+ ..++++|.++|+++|+++|+|++|..|+.. .+.. + ..+ ++.|++++|+||++.|+.||++++
T Consensus 180 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~ 259 (401)
T 1fc4_A 180 LIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAA 259 (401)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEE
T ss_pred EEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEc
Confidence 99998888876 788999999999999999999998777763 2211 0 111 257999999999996666999999
Q ss_pred eCCCcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008 318 KKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH 396 (520)
Q Consensus 318 ~~~~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~ 396 (520)
++ ++.+.+.....+. ..++++...++++..+++.... .++..+++.++++.+.+.|.+.|+++.. ...+
T Consensus 260 ~~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~ 329 (401)
T 1fc4_A 260 RK------EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAG--ADHA 329 (401)
T ss_dssp CH------HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCC--SSSS
T ss_pred CH------HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccC--CCCC
Confidence 87 6666665432111 1234455555555557776532 3677888999999999999988888763 2456
Q ss_pred eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
++++++.. +.+..++.+.|.+.||.+.....|+. +...+++||+++..+ +++|++++++.|.++++.
T Consensus 330 ~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 330 IIPVMLGD-AVVAQKFARELQKEGIYVTGFFYPVV--PKGQARIRTQMSAAH----TPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp EEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEEEEECCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCC-hHHHHHHHHHHHHCCcEEeeecCCCC--CCCCceEEEEeCCCC----CHHHHHHHHHHHHHHHHH
Confidence 67777742 23456677888888999965433321 112467999976443 489999999999988753
No 39
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.95 E-value=2.2e-26 Score=237.79 Aligned_cols=334 Identities=14% Similarity=0.124 Sum_probs=232.7
Q ss_pred hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCCh
Q 010008 93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG 168 (520)
Q Consensus 93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG 168 (520)
.+.|+|..+++ +.++.|++++...+.+.. .+|+. + .+++++..++++++++| ++++ +|.+++|
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-----~---~~~~~~~l~~~l~~~~g~~~~~~----~v~~~~g 98 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-YGYTT-----R---PDSYNESIVNWLYRRHNWKIKSE----WLIYSPG 98 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-CCCBC-----C---CHHHHHHHHHHHHHHHCCCCCGG----GEEEESC
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCC-CCCCC-----C---CHHHHHHHHHHHHHHhCCCCcHH----HeEEcCC
Confidence 46688887776 367999999998876421 23321 1 14556666789999999 5554 3444555
Q ss_pred H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-C--CCCCCCHHHHHHHhhhcCCc
Q 010008 169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-E--STGLVDYDMLEKTAILFRPK 244 (520)
Q Consensus 169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~--~~~~iD~d~le~~i~~~~pk 244 (520)
+ +|+.+++.++++|||+|++.++.|.++.. .+...|. +++.++++ . .++.+|++++++++++ ++
T Consensus 99 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~ 166 (391)
T 4dq6_A 99 VIPAISLLINELTKANDKIMIQEPVYSPFNS--------VVKNNNR--ELIISPLQKLENGNYIMDYEDIENKIKD--VK 166 (391)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECSSCCTHHHH--------HHHHTTC--EEEECCCEECTTSCEECCHHHHHHHCTT--EE
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCCHHHHH--------HHHHcCC--eEEeeeeeecCCCceEeeHHHHHHHhhc--CC
Confidence 5 99999999999999999999988765421 2234454 66677765 2 2356999999999977 89
Q ss_pred EEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--ccc-----EEEeccCccc--CCC
Q 010008 245 LIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD-----VVTTTTHKSL--RGP 310 (520)
Q Consensus 245 lIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aD-----iv~~S~hK~l--~Gp 310 (520)
+|++..++||+ . .++++|+++|+++|+++|+|++|. ++...+....++. ..| +++.|+||++ +|.
T Consensus 167 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 245 (391)
T 4dq6_A 167 LFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHS-DIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGL 245 (391)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGG
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeecccc-ccccCCCCccCHHHcCccccCcEEEEEechhhccCccc
Confidence 99998888886 4 368899999999999999999975 4444332222332 122 8899999987 678
Q ss_pred CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEE
Q 010008 311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKL 388 (520)
Q Consensus 311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v 388 (520)
|.|+++++++ ++.+.+.........++++...+++...+++.. ....++..+++.++++.+.+.|.+ .|+.+
T Consensus 246 r~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 319 (391)
T 4dq6_A 246 QSSYVVLPDE-----KDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG-ESWLESFLEYLESNIDFAIKYINENMPKLKV 319 (391)
T ss_dssp CCEEEECCSH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred ceEEEEeCCH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe
Confidence 8899999863 566655443222223455555555555566652 123477788889999999999987 38888
Q ss_pred ecCCCCCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
..+ ..+.+.|+++...+.+..++.+.|.+. ||.+..+... +....+++||+.. .++++++++++.|.++
T Consensus 320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~iRis~~------~~~~~i~~~l~~l~~~ 389 (391)
T 4dq6_A 320 RKP-EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSF---GIGGSGYQRINLA------CPRSMLEEALIRIKNA 389 (391)
T ss_dssp CCC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGG---CTTCTTEEEEECC------SCHHHHHHHHHHHHHH
T ss_pred cCC-CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhh---CCCCCCeEEEEEc------CCHHHHHHHHHHHHHH
Confidence 754 234556678764456788888888776 9999543211 1223578999865 3478999999998876
Q ss_pred H
Q 010008 468 V 468 (520)
Q Consensus 468 l 468 (520)
+
T Consensus 390 l 390 (391)
T 4dq6_A 390 I 390 (391)
T ss_dssp H
T ss_pred h
Confidence 5
No 40
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.95 E-value=3.3e-26 Score=237.20 Aligned_cols=336 Identities=12% Similarity=0.072 Sum_probs=224.0
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG 168 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG 168 (520)
++.|+|..+++. +++.|++++...+.+.. .+|+. .....++++...+++.+.+|. +++ +|.+++|
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~----~v~~t~g 99 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSLETDA-LGYTV------ALGLPALRQRIARLYGEWYGVDLDPG----RVVITPG 99 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGG----GEEEESS
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCChHHHHHHHHHHHHHHhCCCCCHH----HEEEecC
Confidence 467899888764 57889999988876532 23432 111245665666777777885 443 3444555
Q ss_pred H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008 169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI 246 (520)
+ +|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++++++ ++++|
T Consensus 100 ~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~----~~~~v 165 (391)
T 3h14_A 100 SSGGFLLAFTALFDSGDRVGIGAPGYPSYRQ--------ILRALGL--VPVDLPTAPENRLQPVPADFAGL----DLAGL 165 (391)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECCGGGTTSCCHHHHTTS----CCSEE
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEeecCcccCCCCCHHHHHhc----CCeEE
Confidence 5 99999999999999999999988755421 2334455 6666666643 357899999776 78999
Q ss_pred EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc--CCCCceEEEe
Q 010008 247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFF 317 (520)
Q Consensus 247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l--~GprgG~I~~ 317 (520)
+++.++||+ ..+ +++|.++|+++|+++|+|++|. ++...+....... ..++++.|+||++ +|.|.|++++
T Consensus 166 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 244 (391)
T 3h14_A 166 MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYH-GIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVV 244 (391)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEEC
T ss_pred EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcch-hcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEe
Confidence 998888886 555 8889999999999999999965 4443332222111 3458899999987 6788899999
Q ss_pred eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008 318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL 397 (520)
Q Consensus 318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~ 397 (520)
++ ++.+.+........ .+++....++...+++ .....++..+++.++++.+.+.|.+.|+..+..+..+.+
T Consensus 245 ~~------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 315 (391)
T 3h14_A 245 PE------DQVRVVERIAQNMF-ICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFY 315 (391)
T ss_dssp CG------GGHHHHHHHHHHTT-CCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTE
T ss_pred CH------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEE
Confidence 87 56555543322222 2333334333333454 223457778888899999999998877655433334566
Q ss_pred EEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 398 VLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 398 ~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
+++++...+.+..++.+.| +++||.+..+..++. ...++++||+... +++|+++.++.|.++++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~~~~iRis~~~------~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 316 VYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP--ERGAGTLRFSYAR------ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp EEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT--TTGGGEEEEECCS------CHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC--CCCCCeEEEEecC------CHHHHHHHHHHHHHHHHHh
Confidence 7778765456777776664 557999964332221 1235789998653 4799999999999888754
No 41
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.95 E-value=5.7e-26 Score=233.26 Aligned_cols=320 Identities=14% Similarity=0.096 Sum_probs=227.2
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecCChH-
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS- 169 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~sGs- 169 (520)
+.|+|..++|+ +++.|++++...+.+....+|+. ....+++ +++++++|+ +++ +|.+++|+
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~~~~l~----~~la~~~g~~~~~----~i~~~~g~t 95 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-------PSSEALR----AKLKEVMQVPAGM----EVLLGNGSD 95 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-------CCHHHHH----HHHHHHHTCCTTC----EEEEEEHHH
T ss_pred CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-------CcHHHHH----HHHHHHhCCCCcc----eEEEcCCHH
Confidence 56889888875 68999999988876432234443 1133444 678889998 554 45556666
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
+|+.+++.++++|||+|++.++.|.++.. .+...|. +++.+++++ ++.+|++++++++++.++++|+++
T Consensus 96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 96 EIISMLALAAARPGAKVMAPVPGFVMYAM--------SAQFAGL--EFVGVPLRA-DFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESCSCCSCH--------HHHTTTC--EEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCHHHHHH--------HHHHcCC--eEEEecCCC-CCCCCHHHHHHHhhccCCCEEEEc
Confidence 89999999999999999999998765421 2334454 666777764 678999999999987789999999
Q ss_pred CCCCCC--CC---CHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC--cccEEEeccCccc-CCCCceEEEeeC
Q 010008 250 ASAYPR--DF---DYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRGGMIFFKK 319 (520)
Q Consensus 250 ~s~~p~--~~---d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l-~GprgG~I~~~~ 319 (520)
.++||+ .. ++++|+++|+++ |+++|+|++|.. +...+..+ .+. ..++++.|+||+. +|.|.|++++++
T Consensus 165 ~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~-~~~~~~~~-~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 242 (367)
T 3euc_A 165 YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-FAQESWMS-RLTDFGNLLVMRTVSKLGLAGIRLGYVAGDP 242 (367)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCC-SSSCCSGG-GGGTCTTEEEEEECCCTTSCSCCEEEEEECH
T ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchh-hcccchHH-HHhhCCCEEEEecchhhcccccCceeeeeCH
Confidence 888886 43 577888889999 999999999653 33222111 111 3458889999983 567789999977
Q ss_pred CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeE
Q 010008 320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLV 398 (520)
Q Consensus 320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~ 398 (520)
++.+.+.....++ +++....++...+++. ...+++..+++.++++.+.+.|.+. |+.+..+ ...++
T Consensus 243 ------~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~ 309 (367)
T 3euc_A 243 ------QWLEQLDKVRPPY---NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS--AANFL 309 (367)
T ss_dssp ------HHHHHHGGGCCSS---CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC--SSSEE
T ss_pred ------HHHHHHHHhCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC--CCeEE
Confidence 6777776544322 2344455555555554 2335778888999999999999886 8886543 24456
Q ss_pred EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
++++. +..++.+.|.+.||.+...... .+..++++||++. +++|++++++.|++++
T Consensus 310 ~~~~~----~~~~l~~~l~~~gi~v~~~~~~---~~~~~~~iRis~~-------~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 310 LARVP----DAAQTFDRLLARKVLIKNVSKM---HPLLANCLRVTVS-------TPEENAQFLEAFAASL 365 (367)
T ss_dssp EEECS----CHHHHHHHHHTTTEECEECGGG---CGGGTTEEEEECC-------CHHHHHHHHHHHHHHT
T ss_pred EEECC----CHHHHHHHHHHCCeEEEECCcc---CCCCCCEEEEecC-------CHHHHHHHHHHHHHHh
Confidence 77764 5778888899999998643211 1224679999954 4899999999998765
No 42
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.95 E-value=4.9e-26 Score=233.60 Aligned_cols=319 Identities=13% Similarity=0.049 Sum_probs=228.7
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS- 169 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs- 169 (520)
.+.|+|..++|+ +++.|++++...+... .+||... . .+++ +++++++|++++ +|.+++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~------~-~~lr----~~la~~~~~~~~----~v~~~~g~~ 92 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKA--HLYPDDS------M-IELK----STLAQKYKVQNE----NIIIGAGSD 92 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGT--TSCCCTT------C-HHHH----HHHHHHHTCCGG----GEEEESSHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhh--ccCCCCC------h-HHHH----HHHHHHhCCCcc----eEEECCCHH
Confidence 467899888875 5799999999887632 3455421 1 2343 678888998775 34445555
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
+|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++.+++ +|++++++++++ ++++|+++
T Consensus 93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~-~d~~~l~~~l~~-~~~~v~~~ 160 (365)
T 3get_A 93 QVIEFAIHSKLNSKNAFLQAGVTFAMYEI--------YAKQCGA--KCYKTQSITHNL-DEFKKLYETHKD-EIKLIFLC 160 (365)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHHHTC--EEEECSSSSCCH-HHHHHHHHHTTT-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEEecCCCCC-CCHHHHHHHhCC-CCCEEEEc
Confidence 99999999999999999999987754421 2233454 667777633567 999999999986 89999998
Q ss_pred CCCCCC--CCCHHHHHHHHH--HhCCEEEEechhhcccc--cccccCCCCC-----cccEEEeccCccc--CCCCceEEE
Q 010008 250 ASAYPR--DFDYPRMRQIAD--AVGALLMMDMAHISGLV--AASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF 316 (520)
Q Consensus 250 ~s~~p~--~~d~~~i~~ia~--~~g~~li~D~Ah~~gli--~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~ 316 (520)
.++||+ ..+.+++.++++ ++|+++++|++|..+.. ..+.....+. ..+++++|+||++ +|+|.|+++
T Consensus 161 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 240 (365)
T 3get_A 161 LPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI 240 (365)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEE
T ss_pred CCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEE
Confidence 888886 788888888888 67999999999764321 2111111111 2458899999996 678889999
Q ss_pred eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008 317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH 396 (520)
Q Consensus 317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~ 396 (520)
+++ ++.+.+.....+. +++....+++..+++.. ...++..+++.++++.+.+.|.+.|+++..+ ...
T Consensus 241 ~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--~~~ 307 (365)
T 3get_A 241 ANA------NIISAFYKLRAPF---NVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKHNIKIIDS--YTN 307 (365)
T ss_dssp ECH------HHHHHHHHHSCTT---CSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC--SSS
T ss_pred cCH------HHHHHHHHhcCCC---CcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC--CCe
Confidence 976 6777766543332 24555555555556531 3457788889999999999999889987654 234
Q ss_pred eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
++++++... +..++.+.|.+.||.+..+..++ ++++||++. +++|++++++.|++++
T Consensus 308 ~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~------~~~iRis~~-------~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 308 FITYFFDEK--NSTDLSEKLLKKGIIIRNLKSYG------LNAIRITIG-------TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEEEECSSS--CHHHHHHHHHTTTEECEECGGGT------CSEEEEECC-------CHHHHHHHHHHHHHHH
T ss_pred EEEEECCCC--CHHHHHHHHHHCCEEEEECccCC------CCEEEEEcC-------CHHHHHHHHHHHHHHh
Confidence 567777532 67888888988999995432221 679999964 4799999999998765
No 43
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.95 E-value=9.3e-26 Score=237.32 Aligned_cols=334 Identities=17% Similarity=0.162 Sum_probs=233.8
Q ss_pred cceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008 95 SLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 170 (520)
Q Consensus 95 ~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~ 170 (520)
.|++..+++ ..++.|++++...+.. |..++++.++..| .+...+++ +++++++|++. .+.++||++
T Consensus 66 ~id~~~~~~lg~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~~~~~~l~----~~la~~~g~~~-----~i~~~sGs~ 135 (427)
T 2w8t_A 66 TILLGTYNYMGMTFDPDVIAAGKEALEK-FGSGTCGSRMLNGTFHDHMEVE----QALRDFYGTTG-----AIVFSTGYM 135 (427)
T ss_dssp EEECSCCCTTCGGGCHHHHHHHHHHHHH-HCSCCCSCTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHH
T ss_pred EEEEECcccccCCCCHHHHHHHHHHHHH-hCCCCcccccccCCcHHHHHHH----HHHHHHhCCCc-----eEEecCcHH
Confidence 456665543 2578999999888754 3345665555545 34444554 67888899862 466799999
Q ss_pred HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcEEE
Q 010008 171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLII 247 (520)
Q Consensus 171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pklIi 247 (520)
||..++.+++++||.|++..+.|++... .+...|. +++.++ .+|+++|++++++. ++++|+
T Consensus 136 a~~~al~~l~~~gd~vl~~~~~h~~~~~--------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 136 ANLGIISTLAGKGEYVILDADSHASIYD--------GCQQGNA--EIVRFR------HNSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp HHHHHHHHHSCTTCEEEEETTCCHHHHH--------HHHHSCS--EEEEEC------TTCHHHHHHHHHTSCSSSCEEEE
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCC--eeEEeC------CCCHHHHHHHHHhccCCCCeEEE
Confidence 9999999999999999999987765431 2334454 555544 36999999998764 688999
Q ss_pred EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-cc--cC-CCC-CcccEEEeccCcccCCCCceEEEeeCC
Q 010008 248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD 320 (520)
Q Consensus 248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~--~~-~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~ 320 (520)
++.++|++ ..|+++|+++|+++|++||+|++|..|.... +. .. ..+ +.+|++++|+||++ |++||++++++
T Consensus 200 ~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~-g~~gG~v~~~~- 277 (427)
T 2w8t_A 200 LEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSV-GTVGGFVVSNH- 277 (427)
T ss_dssp EESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTT-CSCCEEEEECC-
T ss_pred EcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhh-ccCCCEEEeCH-
Confidence 98777765 7899999999999999999999987765431 10 00 111 25799999999998 47889999987
Q ss_pred CcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008 321 PVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL 399 (520)
Q Consensus 321 ~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~ 399 (520)
++.+.+.....+. ..++++...++++..+++... ..++..+++.++++++.+.|.+.|+++..+....++++
T Consensus 278 -----~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 350 (427)
T 2w8t_A 278 -----PKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVA 350 (427)
T ss_dssp -----TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEE
T ss_pred -----HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEE
Confidence 4555554321111 123445566666656777653 24677888999999999999888998863221345677
Q ss_pred EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+.+.. +.+...+.+.|.+.||.+.....|+. +...+.+||+.+.. .+++|++++++.|.++++.
T Consensus 351 ~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~~~--~~~~~~lRi~~~~~----~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 351 VMLED-QEQAAMMWQALLDGGLYVNMARPPAT--PAGTFLLRCSICAE----HTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp EEESS-HHHHHHHHHHHHHTTEECEEECTTTS--CTTCEEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred EEECC-HHHHHHHHHHHHHCCeEEeeeCCCCC--CCCCeEEEEEeCCC----CCHHHHHHHHHHHHHHHHH
Confidence 77642 22345677778788999865433332 12346899997754 3589999999999998764
No 44
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.95 E-value=1.3e-25 Score=230.14 Aligned_cols=315 Identities=16% Similarity=0.134 Sum_probs=226.1
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HH
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SP 170 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~ 170 (520)
+.|+|..++|+ +++.|++++...+... .+||. ....++ ++++++++|++++ +|.+++| ++
T Consensus 33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~l----r~~la~~~~~~~~----~v~~~~g~t~ 95 (363)
T 3ffh_A 33 KITKLSSNENPLGTSKKVAAIQANSSVET--EIYPD-------GWASSL----RKEVADFYQLEEE----ELIFTAGVDE 95 (363)
T ss_dssp CCEECSSCSCTTCCCHHHHHHHHTCBSCC--CBC-----------CHHH----HHHHHHHHTCCGG----GEEEESSHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHHh--hcCCC-------cchHHH----HHHHHHHhCCChh----hEEEeCCHHH
Confidence 56889888875 5899999998866432 23442 112333 4778889998875 3444555 59
Q ss_pred HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008 171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 250 (520)
Q Consensus 171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~ 250 (520)
|+..++.++++|||+|+++++.|.++. ..+...|. +++.+++++ ++.+|++++++++++ ++++|+++.
T Consensus 96 a~~~~~~~~~~~gd~vl~~~~~~~~~~--------~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~ 163 (363)
T 3ffh_A 96 LIELLTRVLLDTTTNTVMATPTFVQYR--------QNALIEGA--EVREIPLLQ-DGEHDLEGMLNAIDE-KTTIVWICN 163 (363)
T ss_dssp HHHHHHHHHCSTTCEEEEEESSCHHHH--------HHHHHHTC--EEEEEECCT-TSCCCHHHHHHHCCT-TEEEEEEES
T ss_pred HHHHHHHHHccCCCEEEEcCCChHHHH--------HHHHHcCC--EEEEecCCC-CCCcCHHHHHHhccc-CCCEEEEeC
Confidence 999999999999999999998765432 12333454 666777764 688999999999987 899999998
Q ss_pred CCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEeeC
Q 010008 251 SAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK 319 (520)
Q Consensus 251 s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~~ 319 (520)
++||+ ..|.+++.++++.+ |+++|+|++|.. +.. +.....+. ..++++.|++|++ +|.|.|++++++
T Consensus 164 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~-~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 241 (363)
T 3ffh_A 164 PNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIE-YVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADK 241 (363)
T ss_dssp SCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGG-GCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECH
T ss_pred CCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHh-hcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCH
Confidence 88876 78999999999888 999999999763 232 22222221 2347889999987 577889999977
Q ss_pred CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeE
Q 010008 320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLV 398 (520)
Q Consensus 320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~ 398 (520)
++.+.+.....+ .+++....+++..+++.. ...++..+++.++++.+.+.|.+ .|+.+..+ ...++
T Consensus 242 ------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~ 308 (363)
T 3ffh_A 242 ------EIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYPA--NGNFV 308 (363)
T ss_dssp ------HHHHHHHHTCCS---CCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC--CSSEE
T ss_pred ------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECCC--CCeEE
Confidence 677777654332 234555555555566531 34477888899999999999999 89988654 23556
Q ss_pred EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
++++.. +..++.+.|.+.||.+..+..++ .++++||++. +++|++++++.|+++
T Consensus 309 ~~~~~~---~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~-------~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 309 LIDLGI---EAGTIFSYLEKNGYITRSGAALG-----FPTAVRITIG-------KEEDNSAVIALLEKL 362 (363)
T ss_dssp EEECSS---CHHHHHHHHHHTTEECEETTTTT-----CTTEEEEECC-------CHHHHHHHHHHHHHH
T ss_pred EEECCC---CHHHHHHHHHHCCeEEEeCccCC-----CCCeEEEECC-------CHHHHHHHHHHHHHh
Confidence 777753 67888888889999986433221 2679999864 479999999998875
No 45
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=3.6e-26 Score=235.53 Aligned_cols=331 Identities=15% Similarity=0.103 Sum_probs=226.2
Q ss_pred ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC----CCCCceeeec-CCh
Q 010008 94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD----ENKWGVNVQP-LSG 168 (520)
Q Consensus 94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~----~~~~~~~V~~-~sG 168 (520)
+.+.+.++...+++.|++++...+.+. ++| ...+.. ...+++++++++.. ++ +|.. .+|
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~~~~~~---~~~--------~~~~~~-~~~~~~l~~~~~~~~~~~~~----~v~~~~g~ 68 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDVPSLGH---TSP--------EFVSIF-QRVLKNTRAVFKSAAASKSQ----PFVLAGSG 68 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSCCCCCT---TSH--------HHHHHH-HHHHHHHHHHTTCCGGGTCE----EEEEESCT
T ss_pred cceeecCCCcCchHHHHHHHhcccccc---CCH--------HHHHHH-HHHHHHHHHHhCCCCCCCCc----eEEEcCch
Confidence 456778888889999999987654321 121 111122 23456777888764 33 3434 455
Q ss_pred HHHHHHHHHhhC---CCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHhhhcCCc
Q 010008 169 SPANFEVYTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPK 244 (520)
Q Consensus 169 s~A~~~~l~all---~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i~~~~pk 244 (520)
++|+.+++.++. +|||+|++++.++. |.+. ...+...|. +++.+++ + +++.+|+++|++++++.+++
T Consensus 69 t~al~~~~~~~~~~~~~gd~vlv~~~~~~----~~~~--~~~~~~~g~--~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~ 139 (385)
T 2bkw_A 69 TLGWDIFASNFILSKAPNKNVLVVSTGTF----SDRF--ADCLRSYGA--QVDVVRPLK-IGESVPLELITEKLSQNSYG 139 (385)
T ss_dssp THHHHHHHHHHSCTTCSCCEEEEECSSHH----HHHH--HHHHHHTTC--EEEEECCSS-TTSCCCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHhccCCCCCeEEEEcCCcc----hHHH--HHHHHHcCC--ceEEEecCC-CCCCCCHHHHHHHHhcCCCC
Confidence 699999999997 99999988854321 1110 012233454 6666666 5 46789999999999765799
Q ss_pred EEEEcCCCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEe
Q 010008 245 LIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFF 317 (520)
Q Consensus 245 lIi~~~s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~ 317 (520)
+|++++++||+ ..|+++|.++|+++ |+++++|++|..|....+ +. ++|++++|+||++.||.| |++++
T Consensus 140 ~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~~~d~~~~s~~K~~~~~~G~G~~~~ 214 (385)
T 2bkw_A 140 AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-----FDEWGVDFALTASQKAIGAPAGLSISLC 214 (385)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-----TTTTTCSEEEEESSSTTCCCSCEEEEEE
T ss_pred EEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccc-----ccccCceEEEecCccccccCCcceEEEE
Confidence 99998888775 78999999999999 999999999876643221 22 579999999999988777 99999
Q ss_pred eCCCcchhhHHH-hhcc---------------------cCCC---CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008 318 KKDPVLGVELES-AINN---------------------AVFP---GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372 (520)
Q Consensus 318 ~~~~~~~~~l~~-~i~~---------------------~~~p---~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~ 372 (520)
++ ++.+ ++.. .... ...++++...++++..+++.+...++++..+++.+
T Consensus 215 ~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 288 (385)
T 2bkw_A 215 SS------RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHRE 288 (385)
T ss_dssp CH------HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cH------HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 87 4443 3310 0000 11246677777777777876543346777888999
Q ss_pred HHHHHHHHH-HHCCCEEecC-C---CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEc-cCC
Q 010008 373 NCRALASRL-VELGYKLVSG-G---SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG-SPA 446 (520)
Q Consensus 373 na~~l~~~L-~~~G~~v~~~-g---t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig-~~~ 446 (520)
+++++.+.| .+.|++++.+ + ...+++++.+.. ..++.+.|.+.||.+..+ ......++.+||+ ++.
T Consensus 289 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g----~~~~~~~~~iRis~~~~ 360 (385)
T 2bkw_A 289 MSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGG----IHKDIGPKYIRIGHMGV 360 (385)
T ss_dssp HHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCC----CCTTTGGGEEEECCCGG
T ss_pred HHHHHHHHHHHhcCceecccCcccccCCceEEEecCC----HHHHHHHHHHCCeEEeCC----CCcccCCCEEEEEcccc
Confidence 999999999 7778888752 1 134566776642 667888888899999543 2211235789999 431
Q ss_pred ccccCCCHHHHHHHHHHHHHHHH
Q 010008 447 MTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 447 ~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+....+++|++++++.|+++++
T Consensus 361 -~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 361 -TACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp -GTSSTTCTHHHHHHHHHHHHTT
T ss_pred -ccccCCHHHHHHHHHHHHHHHH
Confidence 1112457999999999988754
No 46
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.95 E-value=1.6e-25 Score=231.76 Aligned_cols=336 Identities=12% Similarity=0.050 Sum_probs=228.3
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS- 169 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs- 169 (520)
.+.|+|..+++. .++.+.+++...+.+. ..+|+. .....++++...+++.+.+|++.+. -+|.+++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~~ 100 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQG-KTRYGP------AAGEPRLREAIAQKLQRDNGLCYGA--DNILVTNGGK 100 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCC------TTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcCCHH
Confidence 356888877753 5789999998877542 123432 1123466666677888888864221 145556765
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEE
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIA 248 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~ 248 (520)
+|+..++.++++|||+|++.++.|.++.. .+...|. +++.++++++ ++.+|+++|++++++ ++++|++
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 169 (388)
T 1j32_A 101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEG--TPVILPTTVETQFKVSPEQIRQAITP-KTKLLVF 169 (388)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCC--EEEEecCCcccCCCCCHHHHHHhcCc-CceEEEE
Confidence 99999999999999999999998765421 2334454 5666666542 467999999999987 8999998
Q ss_pred cCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCC---C----CcccEEEeccCccc--CCCCceE
Q 010008 249 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F----KYCDVVTTTTHKSL--RGPRGGM 314 (520)
Q Consensus 249 ~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p---~----~~aDiv~~S~hK~l--~GprgG~ 314 (520)
+.++||+ .. ++++|.++|+++|+++|+|++|.. +...+....+ + .+.|+++.|+||++ +|+|.|+
T Consensus 170 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~ 248 (388)
T 1j32_A 170 NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEK-ILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGF 248 (388)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEE
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEE
Confidence 8888876 43 489999999999999999999654 3333211111 1 13679999999997 5677899
Q ss_pred EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC
Q 010008 315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS 393 (520)
Q Consensus 315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt 393 (520)
+++++ ++.+.+......+..+.+...+.++ ..+|+.. ....++..+++.++++.+.+.|++. |+++..+.
T Consensus 249 ~~~~~------~~~~~l~~~~~~~~~~~~~~~~~a~-~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~- 319 (388)
T 1j32_A 249 LAGPV------PLVKAATKIQGHSTSNVCTFAQYGA-IAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD- 319 (388)
T ss_dssp EECCH------HHHHHHHHHHHTTTCSCCHHHHHHH-HHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC-
T ss_pred EEeCH------HHHHHHHHHHhhcccCCCHHHHHHH-HHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC-
Confidence 99987 6666655433233334444333333 3355432 2335777888889999999999885 88776542
Q ss_pred CCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 394 DNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 394 ~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.+.+.++++...+.+..++.+.|. ++||.+..+...+ .++++||+.. .+++++++.++.|.++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRis~~------~~~~~i~~~~~~l~~~l~ 385 (388)
T 1j32_A 320 GAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----ADDCIRLSYA------TDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp BTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----CTTBEEEECC------SCHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhC-----CCCcEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 344556666432456777777775 4899985432111 1578999964 358999999999988775
No 47
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.95 E-value=5.6e-26 Score=234.75 Aligned_cols=332 Identities=13% Similarity=0.110 Sum_probs=228.3
Q ss_pred ccceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCC-CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 94 KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy-~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
..|++..+++ +.++.+++++...+.+ +..+++..+|. +..+...++ ++.+++++|++ + .|.++||+
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~-~----~i~~~sGt 109 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQAL----EEELAEWLGYS-R----ALLFISGF 109 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHHH----HHHHHHHHTCS-E----EEEESCHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHH----HHHHHHHhCCC-c----EEEeCCcH
Confidence 4577777765 4689999999888754 22334444443 223334444 47788889986 2 56679999
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEE
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLII 247 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi 247 (520)
+|+..++.++++|||.|++.++.|++... .+...|. +++.++ .+|++++++.+++. ++++|+
T Consensus 110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~v~ 173 (384)
T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLE--------AASLSPS--QLRRFA------HNDVTHLARLLASPCPGQQMVV 173 (384)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSS--EEEEEC------TTCHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHhCCCCcEEEEcccccHHHHH--------HHHHcCC--CEEEeC------CCCHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999999987764321 2334555 555554 25899999998763 267888
Q ss_pred EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccc-cccc-CCCC-CcccEEEeccCcccCCCCceEEEeeCCCc
Q 010008 248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPV 322 (520)
Q Consensus 248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~-~~~~-~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~ 322 (520)
+++++||+ ..|+++|.++|+++|+++|+|++|..|... .+.. ...+ .+.|++++|+||++. |.||++++++
T Consensus 174 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~--- 249 (384)
T 1bs0_A 174 TEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSS--- 249 (384)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECH---
T ss_pred EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCH---
Confidence 88888876 789999999999999999999998776532 1110 1111 147899999999985 7889999987
Q ss_pred chhhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008 323 LGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD 401 (520)
Q Consensus 323 ~~~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd 401 (520)
++.+.+.....+.. .++++...++++..+++.....+.++..+++.++++++.+.|.+.|+++..+ ..++++++
T Consensus 250 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~ 324 (384)
T 1bs0_A 250 ---TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS--CSAIQPLI 324 (384)
T ss_dssp ---HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC--CSSBCCEE
T ss_pred ---HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCEEEEE
Confidence 66665544211111 1234555555555567765422446778889999999999998888887642 34556666
Q ss_pred ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
+. .+.+..++.+.|.+.||.+.....|+. +...+++||+++.. .+++|++++++.|+++
T Consensus 325 ~~-~~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~~Ri~~~~~----~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 325 VG-DNSRALQLAEKLRQQGCWVTAIRPPTV--PAGTARLRLTLTAA----HEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EE-SHHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEECCBCCTT----CCHHHHHHHHHHHHHH
T ss_pred eC-CHHHHHHHHHHHHHCCcEEEeecCCCC--CCCCceEEEEEcCC----CCHHHHHHHHHHHHhh
Confidence 64 223456677888888999965443331 12346899997643 3589999999988764
No 48
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.94 E-value=5.5e-26 Score=234.17 Aligned_cols=334 Identities=11% Similarity=0.139 Sum_probs=228.7
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCChH
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sGs 169 (520)
+.|+|..+++. +++.|++++...+.+. ..+|+.. .+++++..++++++.+| ++++ +|.+++|+
T Consensus 25 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~~~~~l~~~l~~~~g~~~~~~----~v~~~~g~ 91 (383)
T 3kax_A 25 ELIHAWIADMDFEVPQPIQTALKKRIEHP-IFGYTLP--------PENIGDIICNWTKKQYNWDIQKE----WIVFSAGI 91 (383)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSC-CCCCCCC--------CTTHHHHHHHHHHHHHCCCCCGG----GEEEESCH
T ss_pred CeeecccccCCCCCCHHHHHHHHHHHhcC-CCCCCCC--------CHHHHHHHHHHHHHHhCCCCChh----hEEEcCCH
Confidence 56788777753 5899999999888653 2234321 12444556688999999 4554 34445555
Q ss_pred -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHHHHHhhhcCCcEE
Q 010008 170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~le~~i~~~~pklI 246 (520)
+|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|++++++++++ ++++|
T Consensus 92 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v 160 (383)
T 3kax_A 92 VPALSTSIQAFTKENESVLVQPPIYPPFFE--------MVTTNNR--QLCVSPLQKQNDTYAIDFEHLEKQFQQ-GVKLM 160 (383)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSSCCHHHHH--------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTT-TCCEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCcHHHHH--------HHHHcCC--EEEeccceecCCcEEEcHHHHHHHhCc-CCeEE
Confidence 99999999999999999999988765421 2334454 6667666532 245999999999965 89999
Q ss_pred EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-------cccEEEeccCccc--CCCCc
Q 010008 247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRG 312 (520)
Q Consensus 247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-------~aDiv~~S~hK~l--~Gprg 312 (520)
++..++||+ ..+ +++|.++|+++|+++|+|++|. ++...+....++. ..++++.|+||++ +|.|.
T Consensus 161 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 239 (383)
T 3kax_A 161 LLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHS-DIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQA 239 (383)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC
T ss_pred EEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEcccc-ccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhh
Confidence 999888886 555 6667777999999999999974 4443332222221 1238899999986 67788
Q ss_pred eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec
Q 010008 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS 390 (520)
Q Consensus 313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~ 390 (520)
|+++++++ ++.+.+.........++++...+++...+++.. ....++..+++.++++.+.+.|.+. |+.++.
T Consensus 240 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 313 (383)
T 3kax_A 240 SIIIIPNE-----KLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTEC-NDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMK 313 (383)
T ss_dssp EEEECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECC
T ss_pred eEEEeCCH-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec
Confidence 99998542 566665543322223345555555555455431 1224677788889999999999874 888875
Q ss_pred CCCCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 391 ~gt~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
+ ..+.+.|+++...+.+..++.+.|. ++||.+..+... +...++++||++. .++++++++++.|.+++
T Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~iRi~~~------~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 314 P-EGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKY---GLGGEEHIGINIG------CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp C-SBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGG---CTTCTTEEEEECS------SCHHHHHHHHHHHHHHH
T ss_pred C-CceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhh---cCCCCCeEEEEEc------CCHHHHHHHHHHHHHHh
Confidence 4 2345566888655667888888775 799999643221 1223678999865 24789999999888765
No 49
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.94 E-value=2.8e-25 Score=225.07 Aligned_cols=315 Identities=18% Similarity=0.205 Sum_probs=221.0
Q ss_pred HHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008 90 ERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS 167 (520)
Q Consensus 90 ~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s 167 (520)
...+..|+|..++|+ +++.|++++...+... .+||. +...+++ +.+++++|++++ +|.+++
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~lr----~~la~~~~~~~~----~i~~t~ 75 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAAARI--NRYPF-------DAEPRVM----RKLAEHFSCPED----NLMLVR 75 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGT--TSCCT-------THHHHHH----HHHHHHHTSCGG----GEEEES
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHhhhhh--ccCCC-------CchHHHH----HHHHHHhCcCHH----HEEEeC
Confidence 334567999999885 6899999998876532 23332 2334444 678888999875 456688
Q ss_pred hH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008 168 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 168 Gs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI 246 (520)
|+ +++.+++.++ |||+|++.+|.|.++.. .+...|. +++.++++ +++.+|+++++++ . ++++|
T Consensus 76 G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~--~-~~~~v 139 (337)
T 3p1t_A 76 GIDECFDRISAEF--SSMRFVTAWPGFDGYRA--------RIAVSGL--RHFEIGLT-DDLLLDPNDLAQV--S-RDDCV 139 (337)
T ss_dssp HHHHHHHHHHHHS--TTSEEEEESSSCSHHHH--------HHTTSCC--EEEEECBC-TTSSBCHHHHTTC--C-TTEEE
T ss_pred CHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH--------HHHHcCC--EEEEecCC-CCCCCCHHHHHhh--c-CCCEE
Confidence 87 7888888877 99999999988765431 2334454 66777776 4578999999876 2 78999
Q ss_pred EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCccc--CCCCceEEEeeCCCc
Q 010008 247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL--RGPRGGMIFFKKDPV 322 (520)
Q Consensus 247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l--~GprgG~I~~~~~~~ 322 (520)
++++++||+ ..|.+++.++|+++++ +++|++|. ++...+.........++++.|+||++ +|+|.|++++++
T Consensus 140 ~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~-~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--- 214 (337)
T 3p1t_A 140 VLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYV-DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPS--- 214 (337)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTG-GGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCH---
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCCh-hhccccccccccCCCEEEEeeCchhccCcchheEEEEeCH---
Confidence 999998886 8899999999999997 56699965 33322211111124679999999987 588899999987
Q ss_pred chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEe
Q 010008 323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL 402 (520)
Q Consensus 323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~ 402 (520)
++.+.+.....+ ++++...++++..+++.. ..+.+..+++.++++.+.+.|.+.|+.+..+. ..++++..
T Consensus 215 ---~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~ 284 (337)
T 3p1t_A 215 ---ELIAAMKRKQWF---CNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVASSE--ANFVLVEN 284 (337)
T ss_dssp ---HHHHHHHTTSCT---TCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCS--SSEEEEEC
T ss_pred ---HHHHHHHhhcCC---CCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECCCC--CeEEEEEc
Confidence 677776654322 234444555544455421 23566777888889999999998888776542 34556554
Q ss_pred cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 403 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 403 ~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
. ++..+.+.|.++||.+..+..++ .++++||++. +++|++++.+.|+++.
T Consensus 285 ~----~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~-------~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 285 A----AGERTLRFLRERGIQVKDAGQFG-----LHHHIRISIG-------REEDNDRLLAALAEYS 334 (337)
T ss_dssp T----TTHHHHHHHHHTTEECEEGGGGT-----CCSEEEEECC-------CHHHHHHHHHHHHHHT
T ss_pred C----CHHHHHHHHHHCCeEEEECccCC-----CCCeEEEecC-------CHHHHHHHHHHHHHHh
Confidence 3 35678888999999996543222 2579999864 3799999999988764
No 50
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.94 E-value=8.8e-26 Score=236.24 Aligned_cols=365 Identities=12% Similarity=0.055 Sum_probs=242.8
Q ss_pred hhhccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccC-CCCCCCCCCCCcchhHHHHHHHHHHH
Q 010008 71 DYSLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKR 147 (520)
Q Consensus 71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y-~~G~p~~ryy~g~~~~d~lE~~a~~~ 147 (520)
.+++...++..+..+.+.. ...+.|+|..+++. +++.|.+++...+.... ..+|+.. .| ..++++...++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~---~g---~~~lr~~la~~ 79 (422)
T 3fvs_A 7 ARRLDGIDYNPWVEFVKLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT---FG---YPPLTKILASF 79 (422)
T ss_dssp CGGGTTCCCCHHHHHHHHH-HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT---TC---CHHHHHHHHHH
T ss_pred HHHhhccCccHHHHHHHHh-hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC---CC---CHHHHHHHHHH
Confidence 3455666666555443322 23467888877753 78999999998876532 2344431 11 23555566678
Q ss_pred HHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC--
Q 010008 148 ALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-- 224 (520)
Q Consensus 148 ~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-- 224 (520)
+.+.+|.+.+. .-+|.+++|+ +|+..++.++++|||+|++.+|.|.++.. .+...|. +++.+++++
T Consensus 80 ~~~~~g~~~~~-~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~ 148 (422)
T 3fvs_A 80 FGELLGQEIDP-LRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGG--RPVFVSLKPGP 148 (422)
T ss_dssp HHHHHTCCCCH-HHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECBCCC
T ss_pred HHHhhCCCCCC-CCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH--------HHHHcCC--EEEEEeccccc
Confidence 88888865321 0145556766 99999999999999999999998765421 2234454 555666653
Q ss_pred ---------CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008 225 ---------STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA 290 (520)
Q Consensus 225 ---------~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~ 290 (520)
.++.+|++++++++++ ++++|+++.++||+ .. ++++|+++|+++|+++|+|++|. ++...+..+
T Consensus 149 ~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~ 226 (422)
T 3fvs_A 149 IQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ-WMVYDGHQH 226 (422)
T ss_dssp CCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCC
T ss_pred ccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccch-hhccCCCCC
Confidence 2356899999999987 89999999888887 45 58999999999999999999965 444433222
Q ss_pred CCCC------cccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh----
Q 010008 291 DPFK------YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA---- 358 (520)
Q Consensus 291 ~p~~------~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~---- 358 (520)
.++. ..++++.|+||++ +|+|.|++++++ ++.+.+.........+ ++....+++..+++..
T Consensus 227 ~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~ 299 (422)
T 3fvs_A 227 ISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD------HIMKHLRTVHQNSVFH-CPTQSQAAVAESFEREQLLF 299 (422)
T ss_dssp CCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH------HHHHHHHHHHHTTTCC-CCHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcccccCcEEEEecchhccCCccceEEEEEeCH------HHHHHHHHHHhhccCC-CCcHHHHHHHHHHhhccccc
Confidence 2221 2348889999987 578889999987 6666654432222222 3344445555566541
Q ss_pred --cCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC--CC----------HHH-HHHHHhhcCeEE
Q 010008 359 --QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG--ID----------GAR-VEKILDMASITL 423 (520)
Q Consensus 359 --~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g--~~----------~~~-~~~~L~~~gI~v 423 (520)
....+++..+++.++++.+.+.|.+.|++++.+. .+.++|+++...+ .+ ..+ +..+|+++||.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 378 (422)
T 3fvs_A 300 RQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQ-GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVA 378 (422)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS-BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEEC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-eeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEE
Confidence 2334577888899999999999998899877653 3566777764311 11 223 445677899998
Q ss_pred cCCCCCCCC--CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 424 NKNSVPGDK--SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 424 ~~~~~Pg~~--~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
..+...+.. .+...+.+||++.. +++++++.++.|.++++
T Consensus 379 ~~g~~f~~~~~~~~~~~~iRis~~~------~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 379 IPVSIFYSVPHQKHFDHYIRFCFVK------DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp EEGGGGSCHHHHTTSCSEEEEECCC------CHHHHHHHHHHHHHHHH
T ss_pred eCcHHhcCCcCCCCCCCeEEEEecC------CHHHHHHHHHHHHHHHh
Confidence 543211110 12346899998542 58999999999988764
No 51
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.94 E-value=7.8e-26 Score=233.60 Aligned_cols=349 Identities=16% Similarity=0.120 Sum_probs=231.8
Q ss_pred hccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008 73 SLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA 150 (520)
Q Consensus 73 ~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~ 150 (520)
++....+..+..+.+... ..+.|+|..+++. .++.+.+++...+.+ ..+|+.. ....+++ +.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~~~~~l~----~~la~ 72 (381)
T 1v2d_A 6 RTEAAKESIFPRMSGLAQ-RLGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQYAPP------AGLPALR----EALAE 72 (381)
T ss_dssp GGGGC---CHHHHHHHHH-HHTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCSCCCT------TCCHHHH----HHHHH
T ss_pred hhhhcCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCCC------CCCHHHH----HHHHH
Confidence 344444444444433322 2467888877753 578999999887754 2233321 1123444 67778
Q ss_pred HcCCCCCCCceeeecCC-hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--CCCC
Q 010008 151 AFNLDENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTG 227 (520)
Q Consensus 151 lfg~~~~~~~~~V~~~s-Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--~~~~ 227 (520)
++++++++ |.+++ |++|+..++.++++|||+|++.++.|.++.. .+...|. +++.++++ ++++
T Consensus 73 ~~~~~~~~----v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~ 138 (381)
T 1v2d_A 73 EFAVEPES----VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGA--KARLVRLDLTPEGF 138 (381)
T ss_dssp HHTSCGGG----EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEEETTEE
T ss_pred hcCCChhh----EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEeCCCCCccC
Confidence 89998753 33344 5599999999999999999999998865421 2334454 55666665 3457
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC----CcccE
Q 010008 228 LVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KYCDV 298 (520)
Q Consensus 228 ~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~----~~aDi 298 (520)
.+|+++|++++++ ++++|+++.++||+ ..+ +++|.++|+++|+++|+|++|..+ .. +..+.++ .+.|+
T Consensus 139 ~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~-g~~~~~~~~~~~~~~~ 215 (381)
T 1v2d_A 139 RLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDEL-YY-GERPRRLREFAPERTF 215 (381)
T ss_dssp ECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BS-SSCCCCHHHHCTTTEE
T ss_pred CcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccc-cc-CCCCCCHHHhcCCCEE
Confidence 8999999999976 89999998888876 444 889999999999999999997543 22 2111111 25789
Q ss_pred EEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHH
Q 010008 299 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCR 375 (520)
Q Consensus 299 v~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~ 375 (520)
+++|+||++ +|+|.|++++++ ++.+.+....... ..+++....+++..+|+... ...+++..+++.++++
T Consensus 216 ~~~s~sK~~~~~G~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (381)
T 1v2d_A 216 TVGSAGKRLEATGYRVGWIVGPK------EFMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRD 288 (381)
T ss_dssp EEEEHHHHTTCGGGCCEEEECCT------TTHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred EEeechhhcCCcccceEEEEeCH------HHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 999999987 577889999987 4555443321100 11223444445555666442 3456778889999999
Q ss_pred HHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008 376 ALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 455 (520)
Q Consensus 376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~ 455 (520)
.+.+.|.+.|+++..+. .+.++++++... + +.+.|+++||.+..+..++. .+..++++||++.. +++
T Consensus 289 ~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~--~---~~~~l~~~gi~v~~g~~~~~-~~~~~~~iRi~~~~------~~~ 355 (381)
T 1v2d_A 289 LLAGGLRAMGLRVYVPE-GTYFLMAELPGW--D---AFRLVEEARVALIPASAFYL-EDPPKDLFRFAFCK------TEE 355 (381)
T ss_dssp HHHHHHHHTTCCEECCS-BSSEEEEECTTC--C---HHHHHHHTCEECEEGGGGCS-SSCCTTEEEEECCS------CHH
T ss_pred HHHHHHHHCCCEecCCC-cceEEEEecChH--h---HHHHHHhCCEEEecchHhCC-CCCCCCEEEEEeCC------CHH
Confidence 99999998899887642 345667777532 2 77888999999964322211 11235789999753 579
Q ss_pred HHHHHHHHHHHHHHHH
Q 010008 456 EFVAIADFIHEGVEIT 471 (520)
Q Consensus 456 d~~~la~~i~~~l~~~ 471 (520)
|++++++.|.+++...
T Consensus 356 ~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 356 ELHLALERLGRVVNSP 371 (381)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999887643
No 52
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.94 E-value=6.4e-26 Score=233.84 Aligned_cols=335 Identities=15% Similarity=0.111 Sum_probs=223.6
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 170 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~ 170 (520)
+.|+|..+++. .++.|++++...+.+....+|+ ......++++...+++.+.+|++.+.- .+|.+++|+ +
T Consensus 26 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~l~~~ia~~~~~~~g~~~~~~-~~v~~~~g~~~ 98 (376)
T 2dou_A 26 GLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYC------LKSCTLPFLEEAARWYEGRYGVGLDPR-REALALIGSQE 98 (376)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCC------CHHHHHHHHHHHHHHHHHHHSCCCCTT-TSEEEESSHHH
T ss_pred CEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC------CCCCCHHHHHHHHHHHHHHhCCCCCCC-ccEEEcCCcHH
Confidence 56888877764 5799999998887542222332 223355666666677777779862100 034446665 8
Q ss_pred HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008 171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 250 (520)
Q Consensus 171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~ 250 (520)
|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++ ++++.+|++++++.+++ ++++|+++.
T Consensus 99 a~~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~-~~~~~~d~~~l~~~l~~-~~~~v~l~~ 166 (376)
T 2dou_A 99 GLAHLLLALTEPEDLLLLPEVAYPSYFG--------AARVASL--RTFLIPL-REDGLADLKAVPEGVWR-EAKVLLLNY 166 (376)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHTTC--EEEEECB-CTTSSBCGGGSCHHHHH-HEEEEEECS
T ss_pred HHHHHHHHhcCCCCEEEECCCCcHhHHH--------HHHHcCC--EEEEeeC-CCCCCCCHHHHHHhhcc-CceEEEECC
Confidence 9999999999999999999988755421 2233454 5666666 34567999999998876 799999988
Q ss_pred CCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEee
Q 010008 251 SAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFK 318 (520)
Q Consensus 251 s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~ 318 (520)
++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+...+.+. ..++++.|+||++ +|+|.|+++++
T Consensus 167 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 245 (376)
T 2dou_A 167 PNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ-VYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS 245 (376)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG-BSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC
Confidence 88886 444 678899999999999999997643 33221112121 3468899999987 57888999988
Q ss_pred CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008 319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV 398 (520)
Q Consensus 319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~ 398 (520)
+ ++.+.+.....+...+. +....+++..+++.. ...+++..+++.++++.+.+.|.+. +.+..+ ..++++
T Consensus 246 ~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~ 315 (376)
T 2dou_A 246 E------EALARLERVKGVIDFNQ-YAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LSLLPP-RATMYL 315 (376)
T ss_dssp H------HHHHHHHHHHHHHCCCS-CHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCC-CBSSEE
T ss_pred H------HHHHHHHHHHHhcccCC-CHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCC-CeeEEE
Confidence 7 66666554322211222 333444444455431 1234667778888899999999877 776543 234566
Q ss_pred EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
++++. .+.+..++.+.|.+.||.+..+...+ ...++++||++.. ++++++++.+.|.+++
T Consensus 316 ~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~f~---~~~~~~~Ris~~~------~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 316 WGRLP-EGVDDLEFGLRLVERGVALAPGRGFG---PGGKGFVRIALVR------PLEELLEAAKRIREAL 375 (376)
T ss_dssp EEECC-TTCCHHHHHHHHHHTTEECEEGGGGC---GGGTTEEEEECCS------CHHHHHHHHHHHHHTC
T ss_pred EEECC-CCCCHHHHHHHHHHCCEEEcCchhhC---CCCCCeEEEEecC------CHHHHHHHHHHHHHHh
Confidence 77774 35567777777777799985432211 1135789999752 4789999888887654
No 53
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=2.7e-25 Score=230.64 Aligned_cols=327 Identities=16% Similarity=0.107 Sum_probs=225.1
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCChH
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sGs 169 (520)
..|+|..+++. .++.+++++...+... ..+|+. .....++++...+++.+.+|+ +++ +|.+++|+
T Consensus 42 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~g~~~lr~~la~~~~~~~g~~~~~~----~v~~~~g~ 110 (389)
T 1o4s_A 42 DVINLTAGEPDFPTPEPVVEEAVRFLQKG-EVKYTD------PRGIYELREGIAKRIGERYKKDISPD----QVVVTNGA 110 (389)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHTTC-CCCCCC------TTCCHHHHHHHHHHHHHHHTCCCCGG----GEEEESHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCHH----HEEEecCH
Confidence 56888877753 5789999998887542 123332 122356776666777777787 443 45556665
Q ss_pred -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEE
Q 010008 170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi 247 (520)
+|+..++.++++|||+|+++++.|.++.. .+...|. +++.++++++ ++.+|+++|++++++ ++++|+
T Consensus 111 t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 179 (389)
T 1o4s_A 111 KQALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGG--TVNVVETFMSKNFQPSLEEVEGLLVG-KTKAVL 179 (389)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCGGGTTCCCHHHHHHTCCT-TEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecCCccCCCCCHHHHHHhccc-CceEEE
Confidence 99999999999999999999998865421 2334455 5666666542 467999999999987 899999
Q ss_pred EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC--C---CcccEEEeccCccc--CCCCceEE
Q 010008 248 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F---KYCDVVTTTTHKSL--RGPRGGMI 315 (520)
Q Consensus 248 ~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~---~~aDiv~~S~hK~l--~GprgG~I 315 (520)
++.++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+...+. + .+.|++++|+||++ +|.|.|++
T Consensus 180 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l 258 (389)
T 1o4s_A 180 INSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSL-VYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYL 258 (389)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEE
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEE
Confidence 88888876 555 899999999999999999997643 332211111 1 24689999999997 56778999
Q ss_pred EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC
Q 010008 316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN 395 (520)
Q Consensus 316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~ 395 (520)
++++ ++.+.+......+..+.+...+.++ ..+|+ ...++..+++.++++.+.+.|.+.|+++..+ ..+
T Consensus 259 ~~~~------~~~~~l~~~~~~~~~~~~~~~~~a~-~~~l~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~ 326 (389)
T 1o4s_A 259 ISSE------KVATAVSKIQSHTTSCINTVAQYAA-LKALE----VDNSYMVQTFKERKNFVVERLKKMGVKFVEP-EGA 326 (389)
T ss_dssp ECCH------HHHHHHHHHHHHHTCSCCHHHHHHH-HHHTT----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-SBS
T ss_pred EeCH------HHHHHHHHHhhhcccCCCHHHHHHH-HHHHh----ccHHHHHHHHHHHHHHHHHHHHhcCCeeecC-Ccc
Confidence 9987 6666655432222233333333332 22332 2267778889999999999998888877643 234
Q ss_pred eeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 396 HLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 396 ~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.++++++. .+..++.+.|. +.||.+..+...+ .++++||++.. +++++++..+.|.++++
T Consensus 327 ~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~-----~~~~~Ris~~~------~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 327 FYLFFKVR---GDDVKFCERLLEEKKVALVPGSAFL-----KPGFVRLSFAT------SIERLTEALDRIEDFLN 387 (389)
T ss_dssp SEEEEECS---SCHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECCS------CHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCC---CCHHHHHHHHHHHCCEEEeCchhcC-----CCCeEEEEEeC------CHHHHHHHHHHHHHHHh
Confidence 55666764 46677777774 8999985432111 14689999762 57899999988887663
No 54
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.94 E-value=1.2e-25 Score=233.38 Aligned_cols=337 Identities=15% Similarity=0.139 Sum_probs=229.2
Q ss_pred ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCChH
Q 010008 94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sGs 169 (520)
+.|+|..+++ .+++.|.+++...+.+. ..+|+. + ..++++...+++.+.+| ++++ +|.+++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~----~v~~t~g~ 98 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDET-VLGYTG-----P---TEEYKKTVKKWMKDRHQWDIQTD----WIINTAGV 98 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHC-CCSSBC-----C---CHHHHHHHHHHHHHHHCCCCCGG----GEEEESSH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcC-CCCCCC-----C---cHHHHHHHHHHHHHHhCCCCChh----hEEEcCCH
Confidence 5678877776 35789999998887542 123332 1 34566666677777788 4444 34456665
Q ss_pred -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHHHHHhhhcCCcEE
Q 010008 170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~le~~i~~~~pklI 246 (520)
+|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++.+ ++.+|+++|+++++..++++|
T Consensus 99 ~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v 168 (399)
T 1c7n_A 99 VPAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQER--KIIECELLEKDGYYTIDFQKLEKLSKDKNNKAL 168 (399)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTC--EEEECCCEEETTEEECCHHHHHHHHTCTTEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEecccccCCCCEEEcHHHHHHHhccCCCcEE
Confidence 99999999999999999999998765421 2233454 6666666422 245999999999984489999
Q ss_pred EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-------cccEEEeccCccc--CCCCc
Q 010008 247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRG 312 (520)
Q Consensus 247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-------~aDiv~~S~hK~l--~Gprg 312 (520)
+++.++||+ ..+ +++|+++|+++|++||+|++|.. +...+....++. ..++++.|+||++ +|+|.
T Consensus 169 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 247 (399)
T 1c7n_A 169 LFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFD-LIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM 247 (399)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC
T ss_pred EEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCcccHHHcCccccCcEEEEEeChhhccccchhe
Confidence 998888886 666 89999999999999999999754 333332112221 2348889999987 67788
Q ss_pred eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-C-CCEEec
Q 010008 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLVS 390 (520)
Q Consensus 313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~-G~~v~~ 390 (520)
|+++++++ ++.+.+.....+...++++....++...+++.. ...+++..+++.++++.+.+.|.+ . |+.+..
T Consensus 248 G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 321 (399)
T 1c7n_A 248 SNIIIKNP-----DIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPL 321 (399)
T ss_dssp EEEECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCC
T ss_pred EEEEECCH-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEec
Confidence 99999753 566666543322223344444555555566542 233467778888999999999987 4 787654
Q ss_pred CCCCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 391 ~gt~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+ ..+.+.|+++...+.+..++.+.|. ++||.+..+... ++..++++||++.. .+++++++++.|.++++
T Consensus 322 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~iRis~~~------~~~~l~~~l~~l~~~l~ 391 (399)
T 1c7n_A 322 I-EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIF---GDGGIGFERINLAA------PSSVIQESLERLNKALK 391 (399)
T ss_dssp C-SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGG---CGGGTTEEEEECCS------CHHHHHHHHHHHHHHHH
T ss_pred C-CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCcccc---CCCCCCeEEEEecc------CHHHHHHHHHHHHHHHH
Confidence 3 2345556787543456777777775 799998543211 11235789999753 26889999988888775
Q ss_pred H
Q 010008 470 I 470 (520)
Q Consensus 470 ~ 470 (520)
.
T Consensus 392 ~ 392 (399)
T 1c7n_A 392 D 392 (399)
T ss_dssp H
T ss_pred H
Confidence 4
No 55
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=6.2e-27 Score=242.91 Aligned_cols=342 Identities=15% Similarity=0.157 Sum_probs=217.1
Q ss_pred ccceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHH
Q 010008 94 KSLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPA 171 (520)
Q Consensus 94 ~~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A 171 (520)
+.|.|..+. .++++.|++++...+.+.+ +.|+..|..+.. ...+.+..++++++++|++++ +|.+++| ++|
T Consensus 20 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~----~v~~~~g~t~a 92 (400)
T 3vax_A 20 HMTYLDAAATTRVDQRVADIVLHWMTAEF--GNAGSRHEYGIR-AKRGVERAREYLASTVSAEPD----ELIFTSGATES 92 (400)
T ss_dssp --CCCCCCCCSSSCHHHHHHHHHHHHHHH--SCSSCHHHHHHH-HHHHHHHHHHHHHHHTTCCGG----GEEEESCHHHH
T ss_pred CcEEecCCCCCCCCHHHHHHHHHHHHhcc--CCCcccchhHHH-HHHHHHHHHHHHHHHcCCCCC----cEEEeCCHHHH
Confidence 446665444 4689999999998887554 334332222222 233334566899999999875 3334555 599
Q ss_pred HHHHHHhhC----CCCC-EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008 172 NFEVYTAIL----KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 172 ~~~~l~all----~pGD-~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI 246 (520)
+.+++.+++ +||| +|++++++|.+...... .+...|. +++.++++ +++.+|+++|++++++ ++++|
T Consensus 93 l~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v 163 (400)
T 3vax_A 93 NNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLE-----HLAGRGF--EVDFLTPG-PSGRISVEGVMERLRP-DTLLV 163 (400)
T ss_dssp HHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHH-----HHHTTTC--EEEEECCC-TTCCCCHHHHHTTCCT-TEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEECccccHhHHHHHH-----HHHhcCC--eEEEEccC-CCCCcCHHHHHHhcCC-CceEE
Confidence 999999998 8999 99999887765432111 1112354 67777776 4688999999999987 89999
Q ss_pred EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEE-eeCCCc
Q 010008 247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIF-FKKDPV 322 (520)
Q Consensus 247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~-~~~~~~ 322 (520)
+++.++||+ ..|+++|.++|+++|++||+|++|..|....+... .+|++++|+|| +.||.| |+++ ++++
T Consensus 164 ~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~----~~d~~~~s~~K-~~g~~g~g~~~~~~~~-- 236 (400)
T 3vax_A 164 SLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTT----PIDMISISGHK-IGAPKGVGALVTRRRE-- 236 (400)
T ss_dssp ECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGS----CCSEEEEETGG-GTSCSSCEEEEECBCS--
T ss_pred EEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhh----cCcEEEEeHHH-hCCCCceEEEEEecch--
Confidence 999888876 78999999999999999999999887654332211 17999999999 456765 8888 8762
Q ss_pred chhhHH---HhhcccCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008 323 LGVELE---SAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 393 (520)
Q Consensus 323 ~~~~l~---~~i~~~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt 393 (520)
++. ..+..... ....++++...++++..+++... .++++..+++.++++++.+.|...|+++..+..
T Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 312 (400)
T 3vax_A 237 ---EMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQD 312 (400)
T ss_dssp ---SSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTT
T ss_pred ---hccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcc
Confidence 111 11222111 11245667777777777777654 356788889999999999999856888876422
Q ss_pred --CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCC----------CCCCC----CCEEEEcc-CCccccCCCHHH
Q 010008 394 --DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD----------KSALV----PGGIRIGS-PAMTTRGFSEKE 456 (520)
Q Consensus 394 --~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~----------~~~~~----~~giRig~-~~~tt~g~~~~d 456 (520)
..+++++.+. +.+.+++.+.|. .||.++.+...+. .-... .++|||+. +..+ +++|
T Consensus 313 ~~~~~~~~~~~~--~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~----t~e~ 385 (400)
T 3vax_A 313 HVVPHILNLSFE--DVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQA----TDLD 385 (400)
T ss_dssp SBCTTEEEEECT--TCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------
T ss_pred cCCCCEEEEEeC--CCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCC----CHHH
Confidence 1234454443 567888888898 9998854321000 00011 47899997 5443 4799
Q ss_pred HHHHHHHHHHHHH
Q 010008 457 FVAIADFIHEGVE 469 (520)
Q Consensus 457 ~~~la~~i~~~l~ 469 (520)
++++++.|+++++
T Consensus 386 i~~~~~~l~~~~~ 398 (400)
T 3vax_A 386 VEELARGVAKLKP 398 (400)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 56
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.94 E-value=4.1e-25 Score=232.25 Aligned_cols=341 Identities=15% Similarity=0.126 Sum_probs=233.4
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS- 169 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs- 169 (520)
.+.|+|..+++. +++.|++++...+.+....+|+... | ..++++...+++.+.+|.+.+. -+|.+++|+
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---g---~~~lr~~la~~~~~~~g~~~~~--~~i~~t~g~t 115 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLD---G---LPELKQEASRFAKLFVNIDIPA--RACVPTVGSM 115 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTT---C---CHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCC---C---hHHHHHHHHHHHHHhhCCCCCc--ccEEEeCCHH
Confidence 367888887764 5799999999888753324454311 1 2456656666777777754221 145556766
Q ss_pred HHHHHHHHhhC--CCCC--EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcE
Q 010008 170 PANFEVYTAIL--KPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 245 (520)
Q Consensus 170 ~A~~~~l~all--~pGD--~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pkl 245 (520)
+|+.+++.+++ +||| +|++.+|.|.++.. .+...|. +++.++++++++.+|+++|+++++..++++
T Consensus 116 ~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~ 185 (437)
T 3g0t_A 116 QGCFVSFLVANRTHKNREYGTLFIDPGFNLNKL--------QCRILGQ--KFESFDLFEYRGEKLREKLESYLQTGQFCS 185 (437)
T ss_dssp HHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH--------HHHHHTC--CCEEEEGGGGCTTHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH--------HHHHcCC--EEEEEeecCCCCccCHHHHHHHHhcCCceE
Confidence 99999999998 9999 99999987755321 2233454 455556654566799999999994448999
Q ss_pred EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCC--------CC---CcccEEEeccCccc--
Q 010008 246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--------PF---KYCDVVTTTTHKSL-- 307 (520)
Q Consensus 246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--------p~---~~aDiv~~S~hK~l-- 307 (520)
|+++.++||+ ..+ +++|+++|+++|++||+|++|... ...+..+. .+ ...+++++|+||++
T Consensus 186 v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 264 (437)
T 3g0t_A 186 IIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGM-DFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSY 264 (437)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-CTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhc-ccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCC
Confidence 9998888886 454 778899999999999999997532 32221111 11 13458899999986
Q ss_pred CCCCceEEEeeCCCcchhhHHH-h-----------------hcccCCCCCCCCChHHHHHHHHHHHHHhcC--chhHHHH
Q 010008 308 RGPRGGMIFFKKDPVLGVELES-A-----------------INNAVFPGLQGGPHNHTIGGLAVCLKHAQS--PEFKVYQ 367 (520)
Q Consensus 308 ~GprgG~I~~~~~~~~~~~l~~-~-----------------i~~~~~p~~~g~p~~~~iaala~al~~~~~--~~~~~~~ 367 (520)
+|+|.|++++++ ++.+ . +....... ..+++....+++..+++.... ..+++..
T Consensus 265 ~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 337 (437)
T 3g0t_A 265 AGQRIGVLMISG------KLYEREYPDLEESFGRLRFGEALSSSALYAL-SSGATHSAQWGMAAMLKACNDGEYNFRDSV 337 (437)
T ss_dssp GGGCCEEEEECH------HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH-HSSSCHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred ccceeEEEEECH------HHhhhhhhcccccccccchhHHHHHHHHhhh-cCCCCHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 677889999987 5665 5 43321111 123344445555556665421 1167888
Q ss_pred HHHHHHHHHHHHHHHHCCCEEe------cCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEE
Q 010008 368 NKVVSNCRALASRLVELGYKLV------SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIR 441 (520)
Q Consensus 368 ~~i~~na~~l~~~L~~~G~~v~------~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giR 441 (520)
+++.++++.+.+.|.+.|+++. .+...++++++++. +.+..++.+.|.+.||.+.....++ ...++++|
T Consensus 338 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gi~v~~~~~~~---~~~~~~iR 412 (437)
T 3g0t_A 338 IEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK--GMDSSKLIEKFVRYGMCAITLKTTG---SKRNEAMR 412 (437)
T ss_dssp HHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET--TCCHHHHHHHHHHTTEECEESTTTT---CCCTTCEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC--CCCHHHHHHHHHHcCeEEeeccccC---CCCCCEEE
Confidence 9999999999999998898887 22123566788875 6678888888888999995432222 22237899
Q ss_pred EccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 442 IGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 442 ig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
|++... +++|++++++.|.++++
T Consensus 413 is~~~~-----~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 413 ICTSLL-----PESQFPDLEKRLQMLNA 435 (437)
T ss_dssp EECSSS-----CGGGHHHHHHHHHHHHH
T ss_pred EEEecC-----CHHHHHHHHHHHHHHHh
Confidence 987643 47999999999988765
No 57
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.94 E-value=1.3e-25 Score=234.71 Aligned_cols=336 Identities=14% Similarity=0.094 Sum_probs=221.9
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CC-CCCceeeecCC-
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DE-NKWGVNVQPLS- 167 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~-~~~~~~V~~~s- 167 (520)
+.|+|..+++. .++.|.+++...+.+....+|+. .....++++...+++.+.+|+ ++ + +|.+++
T Consensus 38 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~ia~~~~~~~g~~~~~~~----~v~~t~g 107 (412)
T 2x5d_A 38 DIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST------SRGIPRLRRAISHWYRDRYDVQIDPES----EAIVTIG 107 (412)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHTC---------C------TTCCHHHHHHHHHHHHHHHCCCCCTTT----SEEEESC
T ss_pred CEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC------CCCcHHHHHHHHHHHHHHhCCCCCCCc----CEEEcCC
Confidence 46888777753 57999999988775431223432 112346665666677777786 33 3 233355
Q ss_pred hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008 168 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 168 Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI 246 (520)
|++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|++++++++++ ++++|
T Consensus 108 ~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v 176 (412)
T 2x5d_A 108 SKEGLAHLMLATLDHGDTILVPNPSYPIHIY--------GAVIAGA--QVRSVPLVPGIDFFNELERAIRESIP-KPRMM 176 (412)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHHTC--EEEEEECSTTSCHHHHHHHHHHTEES-CCSEE
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeecCCccCCCCCHHHHHHhccc-CceEE
Confidence 4599999999999999999999998765421 2233454 5666667644 334899999999986 89999
Q ss_pred EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC---C---CcccEEEeccCccc--CCCCce
Q 010008 247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F---KYCDVVTTTTHKSL--RGPRGG 313 (520)
Q Consensus 247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p---~---~~aDiv~~S~hK~l--~GprgG 313 (520)
+++.++||+ ..+ +++|.++|+++|+++|+|++|..+. ..+....+ + ...+++++|+||++ +|+|.|
T Consensus 177 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 255 (412)
T 2x5d_A 177 ILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIV-YDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIG 255 (412)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB-CTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCE
T ss_pred EECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCChhhccCccCcEEEEecCccccCCcccceE
Confidence 998888886 444 6889999999999999999976543 22211111 1 14578999999998 577889
Q ss_pred EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 393 (520)
Q Consensus 314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt 393 (520)
++++++ ++.+.+........ .+.+....++...+|+.. ...+++..+++.++++.+.+.|.+.|+.+..+ .
T Consensus 256 ~~~~~~------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~ 326 (412)
T 2x5d_A 256 FMVGNP------ELVSALARIKSYHD-YGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENP-K 326 (412)
T ss_dssp EEEECH------HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC-S
T ss_pred EEEcCH------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC-C
Confidence 999977 66665543221111 223334444444456532 23457778888899999999998878876543 2
Q ss_pred CCeeEEEEecCCCC---CHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 394 DNHLVLVDLRPMGI---DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 394 ~~~~~~vd~~~~g~---~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.++++++++. .++ +..++.+.| +++||.+..+..++ ...++++||++.. +++++++.++.|.++++
T Consensus 327 ~g~~~~~~~~-~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~---~~~~~~iRis~~~------~~~~l~~~l~~l~~~l~ 396 (412)
T 2x5d_A 327 ASMYVWAKIP-EPYAHLGSLEFAKKLLQDAKVSVSPGIGFG---DYGDDHVRFALIE------NRDRLRQAVRGIKAMFR 396 (412)
T ss_dssp BSSEEEEECC-TTTGGGCHHHHHHHHHHHHCEECEEGGGGC---GGGTTEEEEECCS------CHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEcC-CccCCCCHHHHHHHHHHHCCEEEeCchhhC---CCCCCeEEEEecC------CHHHHHHHHHHHHHHHH
Confidence 3456777774 344 566666666 56899995432211 1235789999763 47899999999998876
Q ss_pred H
Q 010008 470 I 470 (520)
Q Consensus 470 ~ 470 (520)
.
T Consensus 397 ~ 397 (412)
T 2x5d_A 397 A 397 (412)
T ss_dssp H
T ss_pred h
Confidence 4
No 58
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.94 E-value=3.2e-25 Score=231.46 Aligned_cols=321 Identities=15% Similarity=0.167 Sum_probs=221.1
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCC
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 183 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pG 183 (520)
.+|.|.+++...+. +|..++.+.++ ++..+..++++ +++++++|.+. .+.+++|++|+..++.++++||
T Consensus 74 ~~p~v~~a~~~~l~-~~~~~~~~~~~~~g~~~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~g 143 (409)
T 3kki_A 74 NHPLIKARLAKSLL-EEQQSLFMSASFLQNDYDKPMIE----KRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPN 143 (409)
T ss_dssp TCHHHHHHHHHHHH-SCCCCCCSBGGGGCSTTTSCHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHH-HcCCCCCccccccCCcHHHHHHH----HHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCC
Confidence 47999999988875 34333333222 22223333444 67888999875 3566999999999999999999
Q ss_pred CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHH
Q 010008 184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPR 261 (520)
Q Consensus 184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~ 261 (520)
|.|++.++.|+++.. .+...|. +++.++. +|+++|++++++.++++|++++++||+ ..|+++
T Consensus 144 d~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~ 207 (409)
T 3kki_A 144 TNVYIDFFAHMSLWE--------GARYANA--QAHPFMH------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE 207 (409)
T ss_dssp CEEEEETTSCHHHHH--------HHHHTTC--EEEEECT------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred CEEEECCCcCHHHHH--------HHHHcCC--eEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence 999999987765431 2334454 5555432 689999999987679999999888775 789999
Q ss_pred HHHHHHHhCCEEEEechhhcccccc-cc--c-CCCC-CcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCC
Q 010008 262 MRQIADAVGALLMMDMAHISGLVAA-SV--V-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF 336 (520)
Q Consensus 262 i~~ia~~~g~~li~D~Ah~~gli~~-~~--~-~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~ 336 (520)
|+++|+++|++||+|++|..|.... +. . ...+ ...|+++.|+||++.++ ||++++++ ++.+.+.....
T Consensus 208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~------~~~~~~~~~~~ 280 (409)
T 3kki_A 208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-AGAIWCNN------EVNRCVPFISY 280 (409)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-CEEEEESS------SGGGTHHHHCH
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-ceEEEECH------HHHHHHHHhCc
Confidence 9999999999999999987654321 10 0 0011 24789999999999766 89999988 44444332111
Q ss_pred CC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHH
Q 010008 337 PG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKI 415 (520)
Q Consensus 337 p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~ 415 (520)
+. ..++++...+++...+++... +.++..+++.++++++.+.|.+.|+++.. ...++++.+... .+..++.+.
T Consensus 281 ~~~~~~~~~~~~~aa~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 354 (409)
T 3kki_A 281 PAIFSSTLLPYEAAGLETTLEIIE--SADNRRQHLDRMARKLRIGLSQLGLTIRS---ESQIIGLETGDE-RNTEKVRDY 354 (409)
T ss_dssp HHHHSBCCCHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTTTCCCCC---SSSEEEEEEESH-HHHHHHHHH
T ss_pred CccccCCCcHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCccCC---CCCEEEEEeCCH-HHHHHHHHH
Confidence 11 112234445555555676543 22567788889999999999988887763 345666666421 234557777
Q ss_pred HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 416 LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 416 L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
|.+.||.+.....|.. +...++|||+.+.. .+++|++++++.|+++++.
T Consensus 355 L~~~Gv~v~~~~~~~~--~~~~~~iRi~~~~~----~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 355 LESNGVFGSVFCRPAT--SKNKNIIRLSLNSD----VNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHTTEECEEECTTSS--CTTCEEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCceEeeeCCCCc--CCCCcEEEEEccCC----CCHHHHHHHHHHHHHHHhc
Confidence 8788999865433322 23467899998754 3589999999999998864
No 59
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=1.5e-25 Score=228.60 Aligned_cols=330 Identities=10% Similarity=0.035 Sum_probs=226.2
Q ss_pred ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008 94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 173 (520)
Q Consensus 94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~ 173 (520)
+.+.+.++...+|+.|++++...+.+... ++. .+ ...+. ++.+.+++++++++|++..+. .+.+.+|++|+.
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~-~~~-~~---~~~~~-~~~~~~~~~la~~~g~~~~~~--v~~~~g~t~al~ 75 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKIG-VIS-HR---SKKFE-EVYKTASDNLKTLLELPSNYE--VLFLASATEIWE 75 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTTT-TSC-TT---SHHHH-HHHHHHHHHHHHHTTCCTTEE--EEEESCHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCcc-CcC-CC---CHHHH-HHHHHHHHHHHHHhCCCCCcE--EEEeCCchHHHH
Confidence 35778888888999999888777765321 111 11 12222 333456789999999863221 233455669999
Q ss_pred HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008 174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253 (520)
Q Consensus 174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 253 (520)
+++.++++| .+++..+++.++ .+. ......|. +++.++++ .++.+|+++++ +++ +||+|++++++|
T Consensus 76 ~~~~~l~~~--~~i~~~~~~~~~---~~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~--~~~-~~~~v~~~~~~n 141 (362)
T 3ffr_A 76 RIIQNCVEK--KSFHCVNGSFSK---RFY---EFAGELGR--EAYKEEAA-FGKGFYPADIT--VPA-DAEIICLTHNET 141 (362)
T ss_dssp HHHHHHCSS--EEEEEECSHHHH---HHH---HHHHHTTC--EEEEEECC-TTCCCCGGGCC--CCT-TCCEEEEESEET
T ss_pred HHHHhccCC--cEEEEcCcHHHH---HHH---HHHHHhCC--CeEEEecC-CCCCCCHHHHh--ccC-CccEEEEEcCCC
Confidence 999999988 444444332221 110 01223354 55566665 45789999998 655 899999998888
Q ss_pred CC--CCCHHHHHHHHHHh-CCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008 254 PR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 329 (520)
Q Consensus 254 p~--~~d~~~i~~ia~~~-g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~ 329 (520)
|+ ..|+++|.++|+++ |+++++|++|..|.... ++..+|++++|+||++.||.| |+++.++ ++.+
T Consensus 142 ptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~~~d~~~~s~~K~~~~~~G~g~~~~~~------~~~~ 210 (362)
T 3ffr_A 142 SSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKF-----DWTKIDSVFFSVQKCFGLPAGLGVWILND------RVIE 210 (362)
T ss_dssp TTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTTSCSEEEEETTSTTCCCSCCEEEEEEH------HHHH
T ss_pred CcceeCCHHHHHHHHHhCCCCEEEEecccccCCccc-----ChhHCcEEEEecccccCCCCceEEEEECH------HHHH
Confidence 76 88999999999999 99999999987664322 222389999999999986766 8888887 4544
Q ss_pred hhcccCC--------------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEE
Q 010008 330 AINNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL 388 (520)
Q Consensus 330 ~i~~~~~--------------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v 388 (520)
++..... ....++++...++++..+++.+...++++..++..++++.+.+.|.+. |+++
T Consensus 211 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 290 (362)
T 3ffr_A 211 KSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSF 290 (362)
T ss_dssp HHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred HhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCcee
Confidence 4432111 112456677777777777776544457788899999999999999986 8988
Q ss_pred ecC-C--CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008 389 VSG-G--SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH 465 (520)
Q Consensus 389 ~~~-g--t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~ 465 (520)
..+ . ....++++.+.. +..++.+.|.+.||.+..+.. +..+++|||++...+ +++|++++++.|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~-----~~~~~~iRis~~~~~----~~e~i~~l~~~l~ 358 (362)
T 3ffr_A 291 GVEDAKLRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYG-----SKKETQIRIANFPAH----SLEQVHKLVQTLK 358 (362)
T ss_dssp SSSCGGGBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSG-----GGTTTEEEEECCTTS----CHHHHHHHHHHHH
T ss_pred ccCChhhcCCceEEEecCC---CHHHHHHHHHHCCeEEecCcc-----ccCCCEEEEECCCCC----CHHHHHHHHHHHH
Confidence 752 1 123455666643 678888888888999964321 224578999987543 4899999999988
Q ss_pred HHH
Q 010008 466 EGV 468 (520)
Q Consensus 466 ~~l 468 (520)
+++
T Consensus 359 ~~~ 361 (362)
T 3ffr_A 359 EKI 361 (362)
T ss_dssp HHT
T ss_pred HHh
Confidence 753
No 60
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.94 E-value=8.1e-26 Score=235.04 Aligned_cols=339 Identities=14% Similarity=0.059 Sum_probs=227.1
Q ss_pred cceEecCC-C--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008 95 SLELIASE-N--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 170 (520)
Q Consensus 95 ~i~Liase-n--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~ 170 (520)
.|+|..+. + ++++.|++++...+.+....+|+.. .| ..++.+...+++++++|.+.+.- -+|.+++|+ +
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g---~~~l~~~l~~~l~~~~g~~~~~~-~~i~~~~g~~~ 113 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RG---DLGIRDLLAPRLAAFTGAPVDAR-DGLIITPGTQG 113 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCT---TC---CHHHHHHHHHHHHHHHTSCCCTT-TSEEEESHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCC---CC---CHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCCcHH
Confidence 46665432 3 3678999999888764322234321 12 13445555688999999853100 034446665 9
Q ss_pred HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-----CCCCCCCHHHHHHHhhhcCCcE
Q 010008 171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-----ESTGLVDYDMLEKTAILFRPKL 245 (520)
Q Consensus 171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-----~~~~~iD~d~le~~i~~~~pkl 245 (520)
|+..++.++++|||+|++.+|.|.++.. .+...|. +++.++++ .+++.+|++++++++++ ++++
T Consensus 114 a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~ 182 (407)
T 3nra_A 114 ALFLAVAATVARGDKVAIVQPDYFANRK--------LVEFFEG--EMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARV 182 (407)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCE
T ss_pred HHHHHHHHhCCCCCEEEEcCCcccchHH--------HHHHcCC--EEEEeecccccccCcCCCcCHHHHHHHHhh-CCcE
Confidence 9999999999999999999998765431 2334555 55566663 24678999999999988 8999
Q ss_pred EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC-------CcccEEEeccCccc--CCCC
Q 010008 246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSL--RGPR 311 (520)
Q Consensus 246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-------~~aDiv~~S~hK~l--~Gpr 311 (520)
|++..++||+ ..+ +++|+++|+++|+++|+|++|..+ ...+....++ ...++++.|+||++ .|.|
T Consensus 183 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 261 (407)
T 3nra_A 183 FLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRL-RYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR 261 (407)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGC
T ss_pred EEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeee
Confidence 9998888886 566 899999999999999999997643 3332211121 13458899999997 5788
Q ss_pred ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEec
Q 010008 312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS 390 (520)
Q Consensus 312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~ 390 (520)
.|++++++ ++.+.+.........++ +....+++..+++. ....+++..+++.++++.+.+.|.+. |+.+..
T Consensus 262 ~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 333 (407)
T 3nra_A 262 LGVAFGSR------AIIARMEKLQAIVSLRA-AGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFART 333 (407)
T ss_dssp CEEEEECH------HHHHHHHHHHHHHTSSS-CHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCC
T ss_pred EEEEEcCH------HHHHHHHHHHhhhccCC-ChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCceecc
Confidence 89999977 66666544322222222 22233333323331 11335777888889999999999885 787755
Q ss_pred CCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 391 ~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+. ...++++++...+.+..++.+.| +++||.+..+..++ +..++++||++.. ++++++++++.|.++++
T Consensus 334 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRis~~~------~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 334 PQ-AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS---PHTADSVRLNFSQ------DHEAAVAAARRIVTLVE 403 (407)
T ss_dssp CS-BSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC---TTCTTBEEEECCS------CHHHHHHHHHHHHHHHH
T ss_pred CC-eeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEEeCC------CHHHHHHHHHHHHHHHH
Confidence 42 33556777754456777777777 56799996543222 2346789999752 58999999999998876
Q ss_pred H
Q 010008 470 I 470 (520)
Q Consensus 470 ~ 470 (520)
.
T Consensus 404 ~ 404 (407)
T 3nra_A 404 R 404 (407)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.94 E-value=4.9e-25 Score=227.99 Aligned_cols=352 Identities=13% Similarity=0.114 Sum_probs=232.2
Q ss_pred cccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc
Q 010008 75 GEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF 152 (520)
Q Consensus 75 ~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf 152 (520)
....+.++..+.+.. ...+.|+|..+++. .++.|++++...+.+. ..+|+.. ....++++...+++++.+
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~l~~~~ 84 (386)
T 1u08_A 13 PQLGTTIFTQMSALA-QQHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM------TGVQALREAIAQKTERLY 84 (386)
T ss_dssp CCCCCCHHHHHHHHH-HHTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHH-hcCCeEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCC------CCCHHHHHHHHHHHHHHh
Confidence 334444454443322 22456888777642 6799999998887642 1234321 113466666667888888
Q ss_pred CCC--CCCCceeeecCCh-HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCC
Q 010008 153 NLD--ENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 229 (520)
Q Consensus 153 g~~--~~~~~~~V~~~sG-s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~i 229 (520)
|.+ ++. +|.+++| ++|+..++.++++|||+|++.+|.|.++.. .+...|. +++.++++++++.+
T Consensus 85 g~~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~ 151 (386)
T 1u08_A 85 GYQPDADS---DITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGG--IVKRMALQPPHFRV 151 (386)
T ss_dssp SCCCCTTT---TEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCTTTCCC
T ss_pred CCCCCCCC---CEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeecCcccCcC
Confidence 854 430 2333555 599999999999999999999998865421 2334454 66666676546789
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC------CcccE
Q 010008 230 DYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDV 298 (520)
Q Consensus 230 D~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~------~~aDi 298 (520)
|+++|++++++ ++++|+++.++||+ .. ++++|.++|+++|+++|+|++|.. +...+....++ ...|+
T Consensus 152 d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i 229 (386)
T 1u08_A 152 DWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH-INFSQQGHASVLAHPQLRERAV 229 (386)
T ss_dssp CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTT-CBCCSSCCCCGGGSHHHHTTEE
T ss_pred CHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccc-cccCCCCCcChhcccCccCcEE
Confidence 99999999976 89999998888886 44 468899999999999999999754 33322211122 14689
Q ss_pred EEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008 299 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 376 (520)
Q Consensus 299 v~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~ 376 (520)
+++|+||++ +|.|.|++++++ ++.+.+.........+. +....+++..+|+.. ....++..+++.++++.
T Consensus 230 ~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~ 301 (386)
T 1u08_A 230 AVSSFGKTYHMTGWKVGYCVAPA------PISAEIRKVHQYLTFSV-NTPAQLALADMLRAE-PEHYLALPDFYRQKRDI 301 (386)
T ss_dssp EEEEHHHHTTCGGGCCEEEECCH------HHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHH
T ss_pred EEecchhhcCCcccceEEEEcCH------HHHHHHHHHHHhhccCC-ChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence 999999997 467789999987 66665543221111222 333444555567654 33456778888899999
Q ss_pred HHHHHHHCCCEEecCCCCCeeEEEEecCCC-CCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008 377 LASRLVELGYKLVSGGSDNHLVLVDLRPMG-IDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE 454 (520)
Q Consensus 377 l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g-~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~ 454 (520)
+.+.|.+.|+++..+ ..++++++++...+ .+..++.+.| +++||.+..+...+. .+..++++||++. .++
T Consensus 302 l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~~iRis~~------~~~ 373 (386)
T 1u08_A 302 LVNALNESRLEILPC-EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA-DPFPHKLIRLCFA------KKE 373 (386)
T ss_dssp HHHHTTSSSCEECCC-CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS-SCCCSCEEEEECC------SCH
T ss_pred HHHHHHHCCCeecCC-CceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCC-CCCCCCEEEEEEc------CCH
Confidence 999998888887654 23466777775321 4566776655 579999854321110 1124578999975 257
Q ss_pred HHHHHHHHHHH
Q 010008 455 KEFVAIADFIH 465 (520)
Q Consensus 455 ~d~~~la~~i~ 465 (520)
++++++++.|.
T Consensus 374 ~~i~~~~~~l~ 384 (386)
T 1u08_A 374 STLLAAAERLR 384 (386)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 89988888775
No 62
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.94 E-value=1e-25 Score=236.43 Aligned_cols=337 Identities=13% Similarity=0.116 Sum_probs=232.7
Q ss_pred hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCCh
Q 010008 93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG 168 (520)
Q Consensus 93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG 168 (520)
++.|+|..+++ ..++.|.+++...+.+. ..+|+. . .+++++..++++++.+| ++++ +|.+++|
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~--~~~l~~~l~~~l~~~~g~~~~~~----~v~~~~g 127 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREH-IFGYNY------F--NDDLYQAVIDWERKEHDYAVVKE----DILFIDG 127 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHC-CSSCBC------C--CHHHHHHHHHHHHHHHCCCCCGG----GEEEESC
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcC-CcCCCC------C--CHHHHHHHHHHHHHHhCCCCCHH----HEEEcCC
Confidence 35688876664 36899999999887642 224432 1 14556667789999999 4454 3444565
Q ss_pred H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--CCCCCCCHHHHHHHhhhcCCcE
Q 010008 169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKL 245 (520)
Q Consensus 169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--~~~~~iD~d~le~~i~~~~pkl 245 (520)
+ +|+.+++.+++++||+|++.++.|.+... .+...|. +++.++++ ..++.+|+++|+++++..++++
T Consensus 128 ~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~ 197 (421)
T 3l8a_A 128 VVPAISIALQAFSEKGDAVLINSPVYYPFAR--------TIRLNDH--RLVENSLQIINGRFEIDFEQLEKDIIDNNVKI 197 (421)
T ss_dssp HHHHHHHHHHHHSCTEEEEEEEESCCHHHHH--------HHHHTTE--EEEEEECEEETTEEECCHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHCCC--EEEeccccccCCCeeeCHHHHHHHhhccCCeE
Confidence 5 89999999999999999999988755321 2333454 55555554 2335789999999998448999
Q ss_pred EEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-------cccEEEeccCccc--CCCC
Q 010008 246 IIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPR 311 (520)
Q Consensus 246 Ii~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-------~aDiv~~S~hK~l--~Gpr 311 (520)
|+++.++||+ . .++++|+++|+++|++||+|++|. ++...+....++. ..++++.|+||++ +|.|
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~ 276 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQ-DLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTK 276 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGC
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhh
Confidence 9999888886 3 368899999999999999999964 5444432222221 2348889999987 5778
Q ss_pred ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEec
Q 010008 312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVS 390 (520)
Q Consensus 312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~ 390 (520)
.|+++++++ ++.+.+.........++++...+++...+++.. ....++..+++.++++.+.+.|++ .|+.++.
T Consensus 277 ~G~~~~~~~-----~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~ 350 (421)
T 3l8a_A 277 NSFAIIQNE-----SLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKELEAKTKIKVME 350 (421)
T ss_dssp CEEEECCSH-----HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC
T ss_pred eEeEEcCCH-----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC
Confidence 899999843 666666543222223345555666666667652 223477788888999999999988 5888876
Q ss_pred CCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 391 ~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+ ..+.+.|+++...+++..++.+.| +++||.++.+...+ ....+.+||+.+ .+++++++.++.|.++++
T Consensus 351 ~-~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~iRi~~~------~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 351 P-EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFG---KEGKYFARLNVA------TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp C-SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGC---GGGTTEEEEECC------SCHHHHHHHHHHHHHHC-
T ss_pred C-CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhC---CCCCCEEEEEec------CCHHHHHHHHHHHHHHHh
Confidence 4 235566788865456666777666 57899996432221 223578999865 247999999999987754
No 63
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=241.25 Aligned_cols=327 Identities=13% Similarity=0.100 Sum_probs=229.2
Q ss_pred hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChHHHHHHHHHhhCC--
Q 010008 106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILK-- 181 (520)
Q Consensus 106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs~A~~~~l~all~-- 181 (520)
++.+.+++...+... ....+. .|...+...++|+.+++++++++|++ .+ . .+.+++|++|+.+++.++.+
T Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~-~--~~~~~ggt~a~~~a~~a~~~~~ 150 (497)
T 3mc6_A 77 GDDLIHLQTIAYEKY-CVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTG-C--GTTTSGGTESLLLACLSAKMYA 150 (497)
T ss_dssp CHHHHHHHHHHHHHT-SSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTC-C--EEEESSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-hhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCC-e--EEEcCcHHHHHHHHHHHHHHHH
Confidence 466777776665432 111111 13334556788888889999999998 33 2 34456667999999998865
Q ss_pred ---CC---CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008 182 ---PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 255 (520)
Q Consensus 182 ---pG---D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~ 255 (520)
+| |+|+++.+.|.++. +.+...|. +++.++++++++.+|+++|++++++ +|++|+++.++||+
T Consensus 151 ~~~~g~~~~~Vi~~~~~h~~~~--------~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~npt 219 (497)
T 3mc6_A 151 LHHRGITEPEIIAPVTAHAGFD--------KAAYYFGM--KLRHVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPH 219 (497)
T ss_dssp HHHSCCSSCEEEEETTSCHHHH--------HHHHHSCC--EEEEECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTT
T ss_pred HhcCCCCCceEEEeCCccHHHH--------HHHHHcCC--eEEEEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCC
Confidence 56 99999988765432 23445565 6667777754689999999999987 89999999888765
Q ss_pred --CCCHHHHHHHHHHhCCEEEEechhhccccc----ccccCC-CC----CcccEEEeccCcccCCCC-ceEEEeeCCCcc
Q 010008 256 --DFDYPRMRQIADAVGALLMMDMAHISGLVA----ASVVAD-PF----KYCDVVTTTTHKSLRGPR-GGMIFFKKDPVL 323 (520)
Q Consensus 256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~----~~~~~~-p~----~~aDiv~~S~hK~l~Gpr-gG~I~~~~~~~~ 323 (520)
..|+++|+++|+++|++|++|++|..+... .+.... ++ .++|++++|+||++.||. .|++++++
T Consensus 220 G~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~---- 295 (497)
T 3mc6_A 220 GIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN---- 295 (497)
T ss_dssp CCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSS----
T ss_pred CcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecC----
Confidence 789999999999999999999998754432 111111 12 278999999999985554 49999987
Q ss_pred hhhHHHhhcccCCCC----------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecC
Q 010008 324 GVELESAINNAVFPG----------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG 391 (520)
Q Consensus 324 ~~~l~~~i~~~~~p~----------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~ 391 (520)
+..........+. ..|+.....+++++++++.+...+++++.+++.++++++.+.|.+. |++++.+
T Consensus 296 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~ 373 (497)
T 3mc6_A 296 --SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN 373 (497)
T ss_dssp --HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC
T ss_pred --HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 3333322211121 2233344456677777776666677889999999999999999984 8998754
Q ss_pred CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
.. ..++.+. ..++++.++.+.|.+.||.++... .+.++|+++.. .+++|++++++.|.++++..
T Consensus 374 ~~-~~~v~~~--~~~~~~~~l~~~L~~~Gi~v~~~~--------~~~~~ri~~~~-----~t~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 374 PR-YSVISFS--SKTLNIHELSDRLSKKGWHFNALQ--------KPVALHMAFTR-----LSAHVVDEICDILRTTVQEL 437 (497)
T ss_dssp CC-SSEEEEE--CTTTTHHHHHHHHHTTTCBCEECC--------SSCCEEEECCT-----TTTCTHHHHHHHHHHHHHHH
T ss_pred CC-eeEEEEe--CCCCCHHHHHHHHHhCCEEEecCC--------CCCeEEEEEeC-----CCHHHHHHHHHHHHHHHHHH
Confidence 32 2334443 345678889999999999885432 23478998762 34799999999999988654
No 64
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.94 E-value=2.9e-25 Score=233.25 Aligned_cols=282 Identities=17% Similarity=0.131 Sum_probs=200.7
Q ss_pred ccChHHH---HHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008 76 EADPEVC---EIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRA 148 (520)
Q Consensus 76 ~~d~~~~---~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y----~~G~p~~ryy~g~~~~d~lE~~a~~~~ 148 (520)
.+++++. +.++++.++|...+++++++|. +.|++++.+.....+ ++||+..|+ ..+.+| +++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-----g~~~Le----~~l 83 (427)
T 3hvy_A 15 NINERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYGYNDI-----GRDSLD----RVY 83 (427)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTTCH-----HHHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCCCCch-----hHHHHH----HHH
Confidence 4577766 6667788888899999999997 899999998654322 345543332 356666 678
Q ss_pred HHHcCCCCCCCceeee--cCChHHHHHHHHHhhCCCCCEEEEcC-CCCCcccc--cccccc-ccccccccceEEEEEccc
Q 010008 149 LAAFNLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLS--HGFMTP-KRRVSGTSIYFESMPYRL 222 (520)
Q Consensus 149 ~~lfg~~~~~~~~~V~--~~sGs~A~~~~l~all~pGD~Vl~~~-~~~~ghls--~g~~~~-~~~v~~~g~~~~~v~~~~ 222 (520)
++++|++.. .|+ ++||++||.+++.++++|||+|++.+ +.|+++.. ++.... ...+...|. +++.+++
T Consensus 84 A~l~g~e~a----lv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~ 157 (427)
T 3hvy_A 84 ANIFNTESA----FVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV--KYKMVDL 157 (427)
T ss_dssp HHHHTCSEE----EEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC--EEEECCC
T ss_pred HHHhCCCce----EEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC--EEEEecC
Confidence 999999863 454 68999999999999999999999998 77765431 000000 011223454 6666665
Q ss_pred CCCCCCCCHHHHHHHhhh-cCCcEEEEcC----CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCC
Q 010008 223 DESTGLVDYDMLEKTAIL-FRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF 293 (520)
Q Consensus 223 d~~~~~iD~d~le~~i~~-~~pklIi~~~----s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~ 293 (520)
+++.+|++++++++++ .+||+|+++. ++||+ ..|+++|+++|++ +|+++++|++|..+.. ...|+
T Consensus 158 --~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~----~~~p~ 231 (427)
T 3hvy_A 158 --KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVE----EKEPT 231 (427)
T ss_dssp --BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTS----SSCGG
T ss_pred --CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccccc----CCCCc
Confidence 4688999999999983 3899999987 77775 5799999999999 8999999999865542 12344
Q ss_pred C-cccEEEeccCcccCC---CCceEEEeeCCCcchhhHHHhhccc-CCCCCC--CCChHHHHHHHHHHHHHhcCchhHHH
Q 010008 294 K-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNA-VFPGLQ--GGPHNHTIGGLAVCLKHAQSPEFKVY 366 (520)
Q Consensus 294 ~-~aDiv~~S~hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~-~~p~~~--g~p~~~~iaala~al~~~~~~~~~~~ 366 (520)
. ++|++++|+||+++| ++||+|++++ ++.+++... ..++.. .++.......+...++. ...+
T Consensus 232 ~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~------~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~-----~~~r 300 (427)
T 3hvy_A 232 DVGADIIAGSLIKNIGGGIATTGGYIAGKE------EYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFM-----APHV 300 (427)
T ss_dssp GGTCSEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH-----HHHH
T ss_pred ccCCeEEEECCcccccccccceEEEEEECH------HHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhH-----HHHH
Confidence 4 689999999999987 8899999987 777776552 233331 22322111111112222 2457
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEecC
Q 010008 367 QNKVVSNCRALASRLVELGYKLVSG 391 (520)
Q Consensus 367 ~~~i~~na~~l~~~L~~~G~~v~~~ 391 (520)
.++..+|+..+++.|++.|+++..+
T Consensus 301 ~~~~~~~a~~la~~L~~~g~~V~p~ 325 (427)
T 3hvy_A 301 TIEAVKGAVFCARIMELAGFDVLPK 325 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred HHHHHHHHHHHHHHHHhCCCeecCC
Confidence 8889999999999999999988543
No 65
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.94 E-value=1.5e-24 Score=225.19 Aligned_cols=334 Identities=14% Similarity=0.109 Sum_probs=221.7
Q ss_pred ccceEecCCC--CChHHHHHHHhhhhhccC---CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecC
Q 010008 94 KSLELIASEN--FTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPL 166 (520)
Q Consensus 94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y---~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~ 166 (520)
+.|+|..+.+ .+++.|.+++...+.+.. ..+|+. ..| ..++++...+++.+.+|. +++ +|.++
T Consensus 36 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~---~~g---~~~lr~~la~~l~~~~g~~~~~~----~i~~~ 105 (398)
T 3ele_A 36 NVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTS---AQG---DVETRAAIAEFLNNTHGTHFNAD----NLYMT 105 (398)
T ss_dssp GCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCC---TTC---CHHHHHHHHHHHHHHHCCCCCGG----GEEEE
T ss_pred CeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCC---CCC---cHHHHHHHHHHHHHHhCCCCChH----HEEEc
Confidence 5688876654 367899999988876521 123432 112 235555666788888885 443 44556
Q ss_pred ChH-HHHHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCc
Q 010008 167 SGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 244 (520)
Q Consensus 167 sGs-~A~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pk 244 (520)
+|+ +|+..++.++++|| |+|++.+|.|.++.. .+...|. +++.++++++++.+|++++++++++ +++
T Consensus 106 ~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~ 174 (398)
T 3ele_A 106 MGAAASLSICFRALTSDAYDEFITIAPYFPEYKV--------FVNAAGA--RLVEVPADTEHFQIDFDALEERINA-HTR 174 (398)
T ss_dssp SSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCTTTSSCCHHHHHHTCCT-TEE
T ss_pred cCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCCcCCcCCHHHHHHHhCc-CCC
Confidence 665 99999999999999 999999998765421 2234454 6777777765679999999999987 899
Q ss_pred EEEEcCCCCCC--CCC---HHHHHHHHHH------hCCEEEEechhhcccccccc-cCCCCC--cccEEEeccCccc--C
Q 010008 245 LIIAGASAYPR--DFD---YPRMRQIADA------VGALLMMDMAHISGLVAASV-VADPFK--YCDVVTTTTHKSL--R 308 (520)
Q Consensus 245 lIi~~~s~~p~--~~d---~~~i~~ia~~------~g~~li~D~Ah~~gli~~~~-~~~p~~--~aDiv~~S~hK~l--~ 308 (520)
+|+++.++||+ .++ +++|.++|++ +|+++|+|++|.. +...+. .+.... ..++++.|+||++ +
T Consensus 175 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 253 (398)
T 3ele_A 175 GVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYRE-IVYDGIKVPFVTKYYDNTLVCYSYSKSLSLP 253 (398)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTT-CBCTTCCCCCGGGTCSSEEEEEESTTTSSCT
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccc-cccCCCCcCChHhhcCCeEEEEehhhcCCCc
Confidence 99999888887 566 6677789998 9999999999653 343331 121111 3458899999987 6
Q ss_pred CCCceEEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE
Q 010008 309 GPRGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK 387 (520)
Q Consensus 309 GprgG~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~ 387 (520)
|+|.|+++++++......+...+.... ..+..+ ++....+++..+++ ... ..+++.++++.+.+.|.+.|++
T Consensus 254 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~---~~~---~~~~~~~~~~~l~~~L~~~g~~ 326 (398)
T 3ele_A 254 GERIGYVLVPDEVYDKAELYAAVCGAGRALGYVC-APSLFQKMIVKCQG---ATG---DINAYKENRDLLYEGLTRIGYH 326 (398)
T ss_dssp TTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCC-SCHHHHHHHTTCTT---CCC---CHHHHHHHHHHHHHHHHHHTCC
T ss_pred cceeEEEEEcchhhhHHHHHHHHHHHhhhccccC-CCHHHHHHHHHHhc---CHH---HHHHHHHHHHHHHHHHHHcCCe
Confidence 788899999884211001222221110 111112 22222222222222 111 3567778889999999888888
Q ss_pred EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 388 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 388 v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
+..+. .+.++|+++.. .+..++.+.|.+.||.+..+..++ .++++||++. .+++++++..+.|.++
T Consensus 327 ~~~~~-~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~------~~~e~i~~~l~~l~~~ 392 (398)
T 3ele_A 327 CFKPD-GAFYMFVKALE--DDSNAFCEKAKEEDVLIVAADGFG-----CPGWVRISYC------VDREMIKHSMPAFEKI 392 (398)
T ss_dssp EECCS-BSSEEEEECSS--SCHHHHHHHHHTTTEECEESGGGT-----CTTEEEEECC------SCHHHHHHHHHHHHHH
T ss_pred ecCCC-eeEEEEEEcCC--CCHHHHHHHHHHCCEEEeCccccC-----CCCeEEEEec------CCHHHHHHHHHHHHHH
Confidence 76542 34556777642 367788888999999995432221 2579999863 3589999999999988
Q ss_pred HHH
Q 010008 468 VEI 470 (520)
Q Consensus 468 l~~ 470 (520)
++.
T Consensus 393 l~~ 395 (398)
T 3ele_A 393 YKK 395 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 66
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.94 E-value=1.9e-26 Score=236.57 Aligned_cols=332 Identities=14% Similarity=0.095 Sum_probs=222.6
Q ss_pred ccceEec--CCCCChHHHHHHHhhhhhccCCCCCC--CCCCCCcchhHHHHHHHHHHH-HHHHcCCCCCCCceeeecCCh
Q 010008 94 KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLP--GKRYYGGNEYIDELETLCQKR-ALAAFNLDENKWGVNVQPLSG 168 (520)
Q Consensus 94 ~~i~Lia--sen~~~~~V~ea~~s~l~~~y~~G~p--~~ryy~g~~~~d~lE~~a~~~-~~~lfg~~~~~~~~~V~~~sG 168 (520)
+.+.|.. +.+++++.|++++...+.+....++. ....+...+...++ +++ +++++|.+ +|.+++|
T Consensus 8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~la~~~~~~------~v~~~~g 77 (371)
T 2e7j_A 8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDF----IHNQLPKFLGCD------VARVTNG 77 (371)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHH----HHTHHHHHTTSS------EEEEESS
T ss_pred CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHH----HHHHHHHHcCCC------EEEEeCC
Confidence 4456654 34678999999999877653211111 00011122333444 477 88999986 2334565
Q ss_pred -HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc--cCCCCCCCCHHHHHHHhhh----c
Q 010008 169 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR--LDESTGLVDYDMLEKTAIL----F 241 (520)
Q Consensus 169 -s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~--~d~~~~~iD~d~le~~i~~----~ 241 (520)
++|+..++.++++|||+|+++++.|.++.. .+...|. +++.++ ++ +++.+|+++|+++++. .
T Consensus 78 ~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~ 146 (371)
T 2e7j_A 78 AREAKFAVMHSLAKKDAWVVMDENCHYSSYV--------AAERAGL--NIALVPKTDY-PDYAITPENFAQTIEETKKRG 146 (371)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHHTTC--EEEEECCCCT-TTCCCCHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHhCCCCEEEEccCcchHHHH--------HHHHcCC--eEEEeecccC-CCCCcCHHHHHHHHHhhcccC
Confidence 599999999999999999999998765432 2334555 566666 65 3578999999999983 2
Q ss_pred CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCC-CceEEE
Q 010008 242 RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGP-RGGMIF 316 (520)
Q Consensus 242 ~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gp-rgG~I~ 316 (520)
++++|++++++||+ ..|+++|.++|+++|+++|+|++|..|.... ++. ++|++++|+||++.+| ++|+++
T Consensus 147 ~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~-----~~~~~~~di~~~s~sK~~~~~~~~G~~~ 221 (371)
T 2e7j_A 147 EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPV-----SLKEIGADFIVGSGHKSMAASGPIGVMG 221 (371)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCC-----CHHHHTCSEEEEEHHHHSSCCSSCEEEE
T ss_pred CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCC-----ChhhcCCCEEEecCCcCCCCCCCcEEEE
Confidence 78999999888876 7899999999999999999999987764321 121 4799999999998665 559999
Q ss_pred eeCCCcchhhHHHh-hcccCCCCC------CCCChHHHHHHHHHHHHHhcCchhHHHHHHH--HHHHHHHHHHHHHCCCE
Q 010008 317 FKKDPVLGVELESA-INNAVFPGL------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV--VSNCRALASRLVELGYK 387 (520)
Q Consensus 317 ~~~~~~~~~~l~~~-i~~~~~p~~------~g~p~~~~iaala~al~~~~~~~~~~~~~~i--~~na~~l~~~L~~~G~~ 387 (520)
+++ ++.++ +......+. .++++...++++..+++.+.. ++.+++ .++++++.+.|.+.|++
T Consensus 222 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~ 291 (371)
T 2e7j_A 222 MKE------EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKLGIK 291 (371)
T ss_dssp ECT------TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHTTCE
T ss_pred Eec------hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 988 45555 544332111 355666667666666765432 455667 78889999999888898
Q ss_pred EecCCC-CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEE-EccCCccccCCCHHHHHHHHHHH
Q 010008 388 LVSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIR-IGSPAMTTRGFSEKEFVAIADFI 464 (520)
Q Consensus 388 v~~~gt-~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giR-ig~~~~tt~g~~~~d~~~la~~i 464 (520)
++.+.. ..+++++++. +..++.+.|.+.||.+.. ..++.. ....++++| +++... ..+++|++++++.|
T Consensus 292 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~---~~~~~~i~~~~~~l 363 (371)
T 2e7j_A 292 QLGDNPHNHDLMFFHAE----VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTY---GLSDEEVDYVLNAF 363 (371)
T ss_dssp EESSSSCCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECT---TCCHHHHHHHHHHH
T ss_pred EecCCCccCceEEEECC----CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeecc---CCCHHHHHHHHHHH
Confidence 875421 2456777764 456788888899998853 111000 011257899 987643 03489999999999
Q ss_pred HHHHH
Q 010008 465 HEGVE 469 (520)
Q Consensus 465 ~~~l~ 469 (520)
+++++
T Consensus 364 ~~~~~ 368 (371)
T 2e7j_A 364 KEIIE 368 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 67
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.94 E-value=3.9e-25 Score=229.67 Aligned_cols=334 Identities=15% Similarity=0.171 Sum_probs=227.0
Q ss_pred ccceEecCCC--C-ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008 94 KSLELIASEN--F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 170 (520)
Q Consensus 94 ~~i~Liasen--~-~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~ 170 (520)
..|+|..+++ + .++.+++++...+.+. ..++.+.++..|.. .+.+..++++++++|.+. .+.+++|++
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~g~~---~~~~~l~~~la~~~g~~~-----v~~~~ggt~ 114 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKY-GTGCAGSRFLNGTL---DIHVELEEKLSAYVGKEA-----AILFSTGFQ 114 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHHH-CSCCCSBTTTTCCC---HHHHHHHHHHHHHHTCSE-----EEEESSHHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHHc-CCCCCCcCcccCCc---HHHHHHHHHHHHHhCCCc-----EEEECCHHH
Confidence 4577777654 2 6789999998887542 22333222222321 222344578889999752 344566779
Q ss_pred HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcEEE
Q 010008 171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLII 247 (520)
Q Consensus 171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pklIi 247 (520)
|+..++.++++|||+|++.+|.|+++.. .+...|. +++.++. +|++++++++++. ++++|+
T Consensus 115 a~~~~~~~~~~~gd~V~~~~p~~~~~~~--------~~~~~g~--~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~ 178 (398)
T 3a2b_A 115 SNLGPLSCLMGRNDYILLDERDHASIID--------GSRLSFS--KVIKYGH------NNMEDLRAKLSRLPEDSAKLIC 178 (398)
T ss_dssp HHHHHHHHSSCTTCEEEEETTCCHHHHH--------HHHHSSS--EEEEECT------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred HHHHHHHHHhCCCCEEEECCccCHHHHH--------HHHHcCC--ceEEeCC------CCHHHHHHHHHhhccCCceEEE
Confidence 9999999999999999999998765531 2334555 5555543 6899999998764 689999
Q ss_pred EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-cccC-C--CCC-cccEEEeccCcccCCCCceEEEeeCC
Q 010008 248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SVVA-D--PFK-YCDVVTTTTHKSLRGPRGGMIFFKKD 320 (520)
Q Consensus 248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~~~-~--p~~-~aDiv~~S~hK~l~GprgG~I~~~~~ 320 (520)
++.++||+ ..++++|.++|+++|+++|+|++|..+.... +... . .+. .+|++++|+||++. |.||++++++
T Consensus 179 ~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~- 256 (398)
T 3a2b_A 179 TDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA- 256 (398)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH-
T ss_pred EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH-
Confidence 98888875 7899999999999999999999987664311 1100 0 111 36999999999985 6669999987
Q ss_pred CcchhhHHHhhcccCCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008 321 PVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL 399 (520)
Q Consensus 321 ~~~~~~l~~~i~~~~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~ 399 (520)
++.+.+.....+ ...++++..+.++...+|+.. .+.++..+++.++++.+.+.|.+.|+++..+ ..++++
T Consensus 257 -----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~g~~~~ 327 (398)
T 3a2b_A 257 -----DVIDFLKHNARSVMFSASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT--ESPILP 327 (398)
T ss_dssp -----HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC--CSSEEE
T ss_pred -----HHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCCEEE
Confidence 666665442111 122344555554444566653 2345677888899999999999888887654 246667
Q ss_pred EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+.+. .+.+..++.+.|.+.||.+..+..++. +...+++||++... .+++|++++++.|.++++.
T Consensus 328 ~~~~-~~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~iRis~~~~----~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 328 IFIR-SNEKTFWVTKMLQDDGVFVNPVVSPAV--PAEESLIRFSLMAT----HTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp EECC-CHHHHHHHHHHHHHTTEECEEECTTTS--CGGGCEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred EEcC-CHHHHHHHHHHHHHCCcEEEeeCCCCC--CCCCceEEEEEeCC----CCHHHHHHHHHHHHHHHHH
Confidence 7763 233456677778777999865432211 11357899997753 3589999999999988753
No 68
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.94 E-value=4.1e-24 Score=220.02 Aligned_cols=320 Identities=17% Similarity=0.155 Sum_probs=226.1
Q ss_pred ceEecCCCC--ChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008 96 LELIASENF--TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS 169 (520)
Q Consensus 96 i~Liasen~--~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs 169 (520)
|+|..+++. .++.+++++...+.+.. ..+|+. ... .++++...+++.+.+|.. ++ +|.+++|+
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~~-~~l~~~la~~l~~~~g~~~~~~----~v~~~~G~ 101 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPE------RDA-VELRDELAAYITKQTGVAVTRD----NLWAANGS 101 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCC------TTC-HHHHHHHHHHHHHHHCCCCCGG----GEEEESHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCC------ccH-HHHHHHHHHhhhhcccCCCChH----hEEECCCh
Confidence 788777764 57899999988875421 123332 112 466666666777776654 43 45667777
Q ss_pred -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008 170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 248 (520)
Q Consensus 170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~ 248 (520)
+|+.+++.++++|||+|++.++.|.++.. .+...|. +++.++.+ +++.+|++++++++++.++++|++
T Consensus 102 ~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~ 170 (369)
T 3cq5_A 102 NEILQQLLQAFGGPGRTALGFQPSYSMHPI--------LAKGTHT--EFIAVSRG-ADFRIDMDVALEEIRAKQPDIVFV 170 (369)
T ss_dssp HHHHHHHHHHHCSTTCEEEEEESSCTHHHH--------HHHHTTC--EEEEEECC-TTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCC--EEEEecCC-cCCCCCHHHHHHHhhccCCCEEEE
Confidence 88989999999999999999998865421 2233454 55666665 356899999999987657999999
Q ss_pred cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--c-ccEEEeccCccc--CCCCceEEEeeCCC
Q 010008 249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y-CDVVTTTTHKSL--RGPRGGMIFFKKDP 321 (520)
Q Consensus 249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~-aDiv~~S~hK~l--~GprgG~I~~~~~~ 321 (520)
+.++||+ ..|.+++.++|+.+++++|+|++|..+........ .++ + .+++++|+||++ +|+|.|++++++
T Consensus 171 ~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-- 247 (369)
T 3cq5_A 171 TTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATT-LLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP-- 247 (369)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGG-GTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT--
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHH-HHhhCCCCEEEEEechHhcCCcccceEEEEeCH--
Confidence 8888876 78999999999999999999999765431111000 011 2 458999999998 577889999987
Q ss_pred cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008 322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD 401 (520)
Q Consensus 322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd 401 (520)
++.+.+.....+. +++....++...+++.. ..+++..+++.++++.+.+.|.+.|+.+..+ ..++++++
T Consensus 248 ----~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~ 316 (369)
T 3cq5_A 248 ----AFIDAVMLVRLPY---HLSALSQAAAIVALRHS--ADTLGTVEKLSVERVRVAARLEELGYAVVPS--ESNFVFFG 316 (369)
T ss_dssp ----HHHHHHHTTSCTT---CSCHHHHHHHHHHHHTH--HHHHTHHHHHHHHHHHHHHHHHHHTCEEECC--SSSEEEEE
T ss_pred ----HHHHHHHHcCCCC---CCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC--CCeEEEEE
Confidence 6777766543322 23444444444456531 2346677888899999999998888888643 34566777
Q ss_pred ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+. .+..++.+.|.++||.+. ||. .++++||+++ +++|++++.+.|.++++
T Consensus 317 ~~---~~~~~l~~~l~~~gi~v~----~~~----~~~~iRis~~-------~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DF---SDQHAAWQAFLDRGVLIR----DVG----IAGHLRTTIG-------VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CC---SSHHHHHHHHHHTTEECB----CCS----CTTEEEEECC-------CHHHHHHHHHHHHHHHT
T ss_pred CC---CCHHHHHHHHHHCCEEEE----ECC----CCCeEEEEeC-------CHHHHHHHHHHHHHHHh
Confidence 64 367778888899999984 331 2578999865 47999999999988764
No 69
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.94 E-value=2.1e-24 Score=226.55 Aligned_cols=360 Identities=12% Similarity=0.044 Sum_probs=236.6
Q ss_pred hccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhcc--CCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008 73 SLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRA 148 (520)
Q Consensus 73 ~l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~--y~~G~p~~ryy~g~~~~d~lE~~a~~~~ 148 (520)
++...++.++..+.+.. .....|+|..+++ ..++.|++++...+... ...+|+. .....++++...+++
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~g~~~l~~~la~~l 90 (429)
T 1yiz_A 18 RYQGSTKSVWVEYIQLA-AQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR------GFGHPRLVQALSKLY 90 (429)
T ss_dssp SCCCCTTCHHHHHHHHH-HHHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCC------SSCCHHHHHHHHHHH
T ss_pred HhhhCCchHHHHHHHHh-ccCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCC------CCCcHHHHHHHHHHH
Confidence 34445555665554432 2346788887765 36799999998887542 1123332 111245665666777
Q ss_pred HHHcCCC--CCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC
Q 010008 149 LAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 225 (520)
Q Consensus 149 ~~lfg~~--~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~ 225 (520)
.+.+|.+ ++. +|.+++|+ +|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++.+
T Consensus 91 ~~~~g~~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~ 157 (429)
T 1yiz_A 91 SQLVDRTINPMT---EVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGG--IPRFIPLKPN 157 (429)
T ss_dssp HHHHTSCCCTTT---SEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECBCC
T ss_pred HHHhCCCCCCcC---CEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEeCCcc
Confidence 7778854 430 24446665 99999999999999999999998765421 2233454 5566666644
Q ss_pred ---------CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008 226 ---------TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 291 (520)
Q Consensus 226 ---------~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~ 291 (520)
++.+|+++|++++++ ++++|+++.++||+ .. ++++|+++|+++|++||+|++|. ++...+....
T Consensus 158 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~ 235 (429)
T 1yiz_A 158 KTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE-HMVFEPFEHI 235 (429)
T ss_dssp CSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTSCCC
T ss_pred cccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc-ccccCCCCCc
Confidence 457999999999976 89999988888886 44 48999999999999999999965 3333221111
Q ss_pred C---C---CcccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH-----h
Q 010008 292 P---F---KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-----A 358 (520)
Q Consensus 292 p---~---~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~-----~ 358 (520)
+ + .+.|+++.|+||++ +|.|.|++++++ ++.+.+.........+ .+....+++..+|+. .
T Consensus 236 ~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~ 308 (429)
T 1yiz_A 236 RICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQMVHQNCVYT-CATPIQEAIAVGFETELKRLK 308 (429)
T ss_dssp CGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH------HHHHHHHHHHHTTTCC-CCHHHHHHHHHHHHHHHTTTT
T ss_pred ChhhccCCcCceEEEecchhccCCCCcceEEEEeCH------HHHHHHHHHHhhcccC-CChHHHHHHHHHHhccccccc
Confidence 1 1 24689999999987 467789999987 6666654422111122 233444455556765 3
Q ss_pred c-CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC-----------CCHHHHHHHH-hhcCeEEcC
Q 010008 359 Q-SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----------IDGARVEKIL-DMASITLNK 425 (520)
Q Consensus 359 ~-~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g-----------~~~~~~~~~L-~~~gI~v~~ 425 (520)
. ...+++..+++.++++.+.+.|.+.|+.+..+. .++++++++.... .+..++.+.| +++||.+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~ 387 (429)
T 1yiz_A 309 SPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ-GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIP 387 (429)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECS-BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeC
Confidence 1 233577788888999999999988888876542 3556777875321 3445566655 589999954
Q ss_pred CCCCCCCC--CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 426 NSVPGDKS--ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 426 ~~~Pg~~~--~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
+...+... ...++++||+.. .++++++++++.|.+++
T Consensus 388 g~~f~~~~~~~~~~~~iRis~~------~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 388 PSAFYSEPNKHLGEDFVRYCFF------KKDENLQKAAEILRKWK 426 (429)
T ss_dssp GGGGSCGGGGGGTTTEEEEECC------SCHHHHHHHHHHHHHHS
T ss_pred chHhCCCcccCCCCCeEEEEec------CCHHHHHHHHHHHHHhc
Confidence 32111000 012578999975 25899999999998765
No 70
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.94 E-value=4.5e-26 Score=236.38 Aligned_cols=333 Identities=16% Similarity=0.133 Sum_probs=220.5
Q ss_pred ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008 94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 173 (520)
Q Consensus 94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~ 173 (520)
+.++|..+.+.+++.+++++...+...+ | .+..+...+++ +.+++++|.+. .|.++||++|+.
T Consensus 23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~---~-----~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~gt~al~ 85 (391)
T 3dr4_A 23 DLPRISVAAPRLDGNERDYVLECMDTTW---I-----SSVGRFIVEFE----KAFADYCGVKH-----AIACNNGTTALH 85 (391)
T ss_dssp -----CCCCCCCCSSHHHHHHHHHHHTC---C-----SSCSHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH
T ss_pred CCceeccCCCCCCHHHHHHHHHHHHcCC---c-----cCCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHH
Confidence 4566666777788999999988876532 1 11234445555 67888999873 466789999999
Q ss_pred HHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008 174 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252 (520)
Q Consensus 174 ~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~ 252 (520)
+++.++ ++|||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++++++ ++++|+++++
T Consensus 86 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n~- 153 (391)
T 3dr4_A 86 LALVAMGIGPGDEVIVPSLTYIASAN--------SVTYCGA--TPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPVHL- 153 (391)
T ss_dssp HHHHHHTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCBCG-
T ss_pred HHHHHcCCCCcCEEEECCCchHHHHH--------HHHHCCC--EEEEEecCccccCcCHHHHHHhcCC-CceEEEEECC-
Confidence 999999 9999999999998865531 2334454 6777778767789999999999987 8888875421
Q ss_pred CCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEec--cCcccCCCCceEEEeeCCCcchhhHHHh
Q 010008 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESA 330 (520)
Q Consensus 253 ~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S--~hK~l~GprgG~I~~~~~~~~~~~l~~~ 330 (520)
.+...|+++|.++|+++|++||+|++|..|....+..... ..|++++| .||+++|++||+++++++ ++.++
T Consensus 154 tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~S~s~~K~l~~g~gg~~~~~~~-----~~~~~ 226 (391)
T 3dr4_A 154 YGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS--LGDCATFSFFGNAIITTGEGGMITTNDD-----DLAAK 226 (391)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHH
T ss_pred CCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecc--cCCEEEEECCCCCcCCcCCeEEEEECCH-----HHHHH
Confidence 2237899999999999999999999998887655432222 24666666 669998888999998874 45444
Q ss_pred hcccCCCCC----------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC--C----CC
Q 010008 331 INNAVFPGL----------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--G----SD 394 (520)
Q Consensus 331 i~~~~~p~~----------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~--g----t~ 394 (520)
+......+. .|.. . .+.++..++.......++++.++..++++++.+.|.+.|+.+... . ..
T Consensus 227 ~~~~~~~g~~~~~~~~~~~~g~~-~-~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 304 (391)
T 3dr4_A 227 MRLLRGQGMDPNRRYWFPIVGFN-Y-RMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHV 304 (391)
T ss_dssp HHHHHBTTCCTTSTTCCSSCCCB-C-BCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCC
T ss_pred HHHHHhcCCCCCCcccccccccc-c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcce
Confidence 432211110 0100 0 111122222222223456777888888999999998878876643 1 11
Q ss_pred CeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCC--------------CCCEEEEccCCccccCCCHHHHH
Q 010008 395 NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDK-SAL--------------VPGGIRIGSPAMTTRGFSEKEFV 458 (520)
Q Consensus 395 ~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~--------------~~~giRig~~~~tt~g~~~~d~~ 458 (520)
.+++++.+.. .+++.+++.+.|.+.||.++....|.+. +.+ ....+|+++... ++++|++
T Consensus 305 ~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~----~t~edi~ 380 (391)
T 3dr4_A 305 FWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAG----LTEADID 380 (391)
T ss_dssp CSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTT----CCHHHHH
T ss_pred eEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCC----CCHHHHH
Confidence 2334555532 2567888999999999998755433211 110 134689987644 4699999
Q ss_pred HHHHHHHHHH
Q 010008 459 AIADFIHEGV 468 (520)
Q Consensus 459 ~la~~i~~~l 468 (520)
++++.|++++
T Consensus 381 ~~~~~l~~~l 390 (391)
T 3dr4_A 381 RVIAALDQVL 390 (391)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 71
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.94 E-value=3.9e-25 Score=230.25 Aligned_cols=341 Identities=12% Similarity=0.020 Sum_probs=226.8
Q ss_pred hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008 93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS- 169 (520)
Q Consensus 93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs- 169 (520)
.+.|+|..+++ ++++.|++++...+.+....+|+... | ..++++...+++.+.+|.+.+. .-+|.+++|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---g---~~~l~~~la~~~~~~~~~~~~~-~~~i~~~~g~~ 95 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGF---G---HPALVKALSCLYGKIYQRQIDP-NEEILVAVGAY 95 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTT---C---CHHHHHHHHHHHHHHHTSCCCT-TTSEEEESHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCC---C---hHHHHHHHHHHHHHHhCCCCCC-CCCEEEeCCcH
Confidence 35688887765 36899999999888654333454311 1 2455655667777777765321 0145556766
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC----------CCCCCCHHHHHHHhh
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----------STGLVDYDMLEKTAI 239 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~----------~~~~iD~d~le~~i~ 239 (520)
+|+..++.++++|||+|++++|.|.++.. .+...|. +++.+++++ .++.+|+++++++++
T Consensus 96 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~ 165 (410)
T 3e2y_A 96 GSLFNSIQGLVDPGDEVIIMVPFYDCYEP--------MVRMAGA--VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS 165 (410)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEeccccccccccccccCCcCCHHHHHhhcC
Confidence 99999999999999999999988765421 2334455 444554442 245689999999997
Q ss_pred hcCCcEEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC------cccEEEeccCccc-
Q 010008 240 LFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL- 307 (520)
Q Consensus 240 ~~~pklIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~------~aDiv~~S~hK~l- 307 (520)
+ ++++|+++.++||+ . .++++|+++|+++|+++|+|++|. ++...+....++. ..++++.|+||++
T Consensus 166 ~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g 243 (410)
T 3e2y_A 166 S-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE-WLVYTGHTHVKIATLPGMWERTITIGSAGKTFS 243 (410)
T ss_dssp T-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSS
T ss_pred C-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh-hcccCCCCCCCHHHcCCccCeEEEEecchhhcC
Confidence 7 89999999888886 3 268999999999999999999964 4443332221221 2348889999987
Q ss_pred -CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHHHHHHH
Q 010008 308 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH------AQSPEFKVYQNKVVSNCRALASR 380 (520)
Q Consensus 308 -~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~------~~~~~~~~~~~~i~~na~~l~~~ 380 (520)
+|+|.|++++++ ++.+.+.........+. +....++++.+++. ......++..+++.++++.+.+.
T Consensus 244 ~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (410)
T 3e2y_A 244 VTGWKLGWSIGPA------HLIKHLQTVQQNSFYTC-ATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRL 316 (410)
T ss_dssp CGGGCCEEEECCH------HHHHHHHHHHHTTTCCC-CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEECH------HHHHHHHHHHHhhccCC-ChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999987 66666554322222233 33444444455653 11334577888889999999999
Q ss_pred HHHCCCEEecCCCCCeeEEEEecCC--CCCH---------HHHHHHHhhcCeEEcCCCCCCCCC--CCCCCEEEEccCCc
Q 010008 381 LVELGYKLVSGGSDNHLVLVDLRPM--GIDG---------ARVEKILDMASITLNKNSVPGDKS--ALVPGGIRIGSPAM 447 (520)
Q Consensus 381 L~~~G~~v~~~gt~~~~~~vd~~~~--g~~~---------~~~~~~L~~~gI~v~~~~~Pg~~~--~~~~~giRig~~~~ 447 (520)
|.+.|+.+..+. .++++++++... +++. +.+..+|+++||.+..+...+... +...+.|||++.
T Consensus 317 L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~-- 393 (410)
T 3e2y_A 317 LNSVGLKPIVPD-GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFI-- 393 (410)
T ss_dssp HHTTTCEEEBCS-BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECC--
T ss_pred HHHCCCeecCCC-ccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEc--
Confidence 998899876653 356677777532 2222 345556788999995432111100 113578999854
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 010008 448 TTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 448 tt~g~~~~d~~~la~~i~~ 466 (520)
.+++++++.++.|++
T Consensus 394 ----~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 394 ----KKDSTLDAAEEIFRA 408 (410)
T ss_dssp ----CCHHHHHHHHHHHHT
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 268999999988764
No 72
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.94 E-value=2.6e-25 Score=228.82 Aligned_cols=332 Identities=14% Similarity=0.128 Sum_probs=225.7
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCCh
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 168 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sG 168 (520)
++.|+|..+++. +++.|++++...+.+. ..+|+. . +. ++++...+++.+.+|.+ ++ +|.+++|
T Consensus 23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-~---~~----~lr~~la~~~~~~~~~~~~~~----~i~~t~g 89 (377)
T 3fdb_A 23 QGVLPLWVAESDFSTCPAVLQAITDAVQRE-AFGYQP-D---GS----LLSQATAEFYADRYGYQARPE----WIFPIPD 89 (377)
T ss_dssp TTSEECCSSCCCSCCCHHHHHHHHHHHHTT-CCSSCC-S---SC----CHHHHHHHHHHHHHCCCCCGG----GEEEESC
T ss_pred CCeeeecccCCCCCCCHHHHHHHHHHHHcC-CCCCCC-C---CH----HHHHHHHHHHHHHhCCCCCHH----HEEEeCC
Confidence 367888887763 6899999999887653 234543 2 12 34444556777777754 43 3444555
Q ss_pred H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008 169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi 247 (520)
+ +|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ +|++++++++++ ++++|+
T Consensus 90 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~---~d~~~l~~~l~~-~~~~v~ 155 (377)
T 3fdb_A 90 VVRGLYIAIDHFTPAQSKVIVPTPAYPPFFH--------LLSATQR--EGIFIDATGG---INLHDVEKGFQA-GARSIL 155 (377)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESCCTHHHH--------HHHHHTC--CEEEEECTTS---CCHHHHHHHHHT-TCCEEE
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEEccCCCC---CCHHHHHHHhcc-CCCEEE
Confidence 5 99999999999999999999998765431 2233454 5666666643 999999999988 799999
Q ss_pred EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccc-ccCCCCC-----cccEEEeccCccc--CCCCceE
Q 010008 248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPFK-----YCDVVTTTTHKSL--RGPRGGM 314 (520)
Q Consensus 248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~-~~~~p~~-----~aDiv~~S~hK~l--~GprgG~ 314 (520)
+..++||+ .. ++++|+++|+++|+++|+|++|.. +...+ ....++. ..++++.|+||++ +|.|.|+
T Consensus 156 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 234 (377)
T 3fdb_A 156 LCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAP-LVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQ 234 (377)
T ss_dssp EESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGG-GBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEE
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccch-hhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheE
Confidence 99888886 44 467788889999999999999654 44333 2222221 2348899999997 6778898
Q ss_pred EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecCC
Q 010008 315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGG 392 (520)
Q Consensus 315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~g 392 (520)
+++.++ ++.+.+...... ...+++....++...+++.. ...+++..+++.++++.+.+.|++. |+.+..+.
T Consensus 235 ~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 307 (377)
T 3fdb_A 235 IIFSNP-----SDAEHWQQLSPV-IKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQ 307 (377)
T ss_dssp EECCSH-----HHHHHHHHSCHH-HHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCS
T ss_pred EEeCCH-----HHHHHHHHHHHh-hcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC
Confidence 887543 666666543211 12334444555555566643 2335777888999999999999884 88887542
Q ss_pred CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.+.+.++++...+.+.+.+..+++++||.+..+... +...++++||+.. .+++++++.++.|.++++
T Consensus 308 -~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~~Ris~~------~~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 308 -ATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWF---GEDGTGFCRLNFA------TSREVLEEAIDRMAKAVS 374 (377)
T ss_dssp -BCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGG---CGGGTTEEEEECC------SCHHHHHHHHHHHHHHHT
T ss_pred -eeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhc---cCCCCCEEEEEeC------CCHHHHHHHHHHHHHHHh
Confidence 345557888654455445566667779999543211 1123678999865 247999999999988764
No 73
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2.8e-25 Score=232.09 Aligned_cols=360 Identities=14% Similarity=0.083 Sum_probs=235.4
Q ss_pred hccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008 73 SLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA 150 (520)
Q Consensus 73 ~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~ 150 (520)
++..+.+..+..+.+. ....+.|+|..+++. .++.+.+++...+.+. ..+|+.. ....++++...+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~~ 77 (411)
T 2o0r_A 6 RLRPYATTVFAEMSAL-ATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQYPPG------PGSAPLRRAIAAQRRR 77 (411)
T ss_dssp GGGGGSSCHHHHHHHH-HHTTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHH
T ss_pred HhHhcCccHHHHHHHH-hhcCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHHHHH
Confidence 3444555566555433 223456888777653 6789999999888652 2234321 1134666666678888
Q ss_pred HcCCC--CCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--
Q 010008 151 AFNLD--ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-- 225 (520)
Q Consensus 151 lfg~~--~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-- 225 (520)
.+|++ +++ +|.+++|+ +|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++
T Consensus 78 ~~g~~~~~~~---~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~--------~~~~~g~--~~~~v~~~~~~~ 144 (411)
T 2o0r_A 78 HFGVDYDPET---EVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP--------VVAMAGA--HRVTVPLVPDGR 144 (411)
T ss_dssp HHCCCCCTTT---SEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEEETT
T ss_pred HcCCCCCCCc---eEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEeecccccc
Confidence 88864 320 23446655 99999999999999999999998866421 2334455 5556666533
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC------C
Q 010008 226 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------K 294 (520)
Q Consensus 226 ~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~------~ 294 (520)
++.+|+++|++++++ ++++|+++.++||+ ..+ +++|+++|+++|++||+|++|..+ ...+..+.++ .
T Consensus 145 ~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~ 222 (411)
T 2o0r_A 145 GFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHL-VFDHARHLPLAGFDGMA 222 (411)
T ss_dssp EEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCTTCCCCCGGGSTTTG
T ss_pred CCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcChhhccCCC
Confidence 356999999999987 89999988888876 444 589999999999999999997543 3322211111 2
Q ss_pred cccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008 295 YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372 (520)
Q Consensus 295 ~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~ 372 (520)
+.|++++|+||++ +|.|.|++++++ ++.+.+.........+.+. ...+++..+|+.. ...+++..+++.+
T Consensus 223 ~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~~~~-~~~~a~~~~l~~~-~~~~~~~~~~~~~ 294 (411)
T 2o0r_A 223 ERTITISSAAKMFNCTGWKIGWACGPA------ELIAGVRAAKQYLSYVGGA-PFQPAVALALDTE-DAWVAALRNSLRA 294 (411)
T ss_dssp GGEEEEEEHHHHTTCTTTCEEEEECCH------HHHHHHHHHHHHHTSCCCT-THHHHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred CCEEEEeechhhcCCccceEEEEeeCH------HHHHHHHHHHhhccCCCCh-HHHHHHHHHHhCC-hHHHHHHHHHHHH
Confidence 4689999999987 567789999976 6666554321110111222 2334444566543 2345777888889
Q ss_pred HHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-CCCHHHHHHHH-hhcCeEEcCCCCC-CCC-------CCCCCCEEEE
Q 010008 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-GIDGARVEKIL-DMASITLNKNSVP-GDK-------SALVPGGIRI 442 (520)
Q Consensus 373 na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-g~~~~~~~~~L-~~~gI~v~~~~~P-g~~-------~~~~~~giRi 442 (520)
+++.+.+.|.+.|+++..+. .+.++++++... +.+..++.+.| ++.||.+..+... +.. ....++++||
T Consensus 295 ~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRi 373 (411)
T 2o0r_A 295 RRDRLAAGLTEIGFAVHDSY-GTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRF 373 (411)
T ss_dssp HHHHHHHHHHHHTCEECCCC-BSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEE
T ss_pred HHHHHHHHHHHcCCEecCCC-eeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEE
Confidence 99999999988888876542 345677777532 24566666655 5789998543211 100 0013467999
Q ss_pred ccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 443 GSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 443 g~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
++. .+++|++++++.|.++++.
T Consensus 374 s~~------~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 374 TFC------KRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp ECC------SCHHHHHHHHHHHGGGGC-
T ss_pred Eec------CCHHHHHHHHHHHHHHHhc
Confidence 964 2578999999999876643
No 74
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.8e-25 Score=233.33 Aligned_cols=356 Identities=13% Similarity=0.096 Sum_probs=232.7
Q ss_pred cChHHHHHHHHHHH--------HhhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008 77 ADPEVCEIITKEKE--------RQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 146 (520)
Q Consensus 77 ~d~~~~~~~~~e~~--------~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~ 146 (520)
..+..+..+.+... ...+.|+|..+++ .+++.|.+++...+.+....+|+.. .| ..++++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr~~ia~ 106 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT---RG---RPSLINSLIK 106 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT---TC---CHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC---CC---CHHHHHHHHH
Confidence 55666766655442 2235788877764 3678999999888754112234321 12 2355555556
Q ss_pred HHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC
Q 010008 147 RALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 225 (520)
Q Consensus 147 ~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~ 225 (520)
++.+.+|.+.+ . -+|.+++|+ +|+.+++.++++|||+|++++|.|.++.. .+...|. +++.++++++
T Consensus 107 ~l~~~~g~~~~-~-~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~ 174 (447)
T 3b46_A 107 LYSPIYNTELK-A-ENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIP--------NIELCGG--KVVYVPINPP 174 (447)
T ss_dssp HHTTTTTSCCC-G-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEEEECC
T ss_pred HHHHhcCCCCC-h-hhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEeCCCc
Confidence 77777776432 1 145567775 99999999999999999999998765421 2334555 5556666543
Q ss_pred -----------CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008 226 -----------TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV 289 (520)
Q Consensus 226 -----------~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~ 289 (520)
++.+|+++|++++++ ++++|+++.++||+ .. ++++|+++|+++|++||+|++|. ++.+.+..
T Consensus 175 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~ 252 (447)
T 3b46_A 175 KELDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYE-HLYFTDSF 252 (447)
T ss_dssp GGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCC
T ss_pred cccccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccch-hcccCCCC
Confidence 467999999999986 89999999888886 33 68899999999999999999965 44443311
Q ss_pred CC--CC----CcccEEEeccCccc--CCCCceEEEe-eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-
Q 010008 290 AD--PF----KYCDVVTTTTHKSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ- 359 (520)
Q Consensus 290 ~~--p~----~~aDiv~~S~hK~l--~GprgG~I~~-~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~- 359 (520)
.. .+ .+.++++.|+||++ +|+|.|++++ ++ ++.+.+.........+. +....++++.+|+...
T Consensus 253 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~------~l~~~l~~~~~~~~~~~-~~~~~~a~~~aL~~~~~ 325 (447)
T 3b46_A 253 TRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNA------ELLSYAAKAHTRICFAS-PSPLQEACANSINDALK 325 (447)
T ss_dssp CCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCH------HHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHHHH
T ss_pred cCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCH------HHHHHHHHHHhhccCCC-ChHHHHHHHHHHhCCcc
Confidence 11 12 14679999999987 5888999999 66 66665543211111223 3334444555676542
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC--------------CCCHHHHHHHH-hhcCeEEc
Q 010008 360 SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM--------------GIDGARVEKIL-DMASITLN 424 (520)
Q Consensus 360 ~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~--------------g~~~~~~~~~L-~~~gI~v~ 424 (520)
...+++..+++.++++.+.+.|.+.|+++..+ ..+.++|+++... +.+..++.+.| +++||.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 404 (447)
T 3b46_A 326 IGYFEKMRQEYINKFKIFTSIFDELGLPYTAP-EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAI 404 (447)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHTCCEECC-SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECB
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-CeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEE
Confidence 12357778889999999999998888887654 2356678887532 12344565555 57999994
Q ss_pred CCCCCCCCC--CCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 425 KNSVPGDKS--ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 425 ~~~~Pg~~~--~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
.+...+... +..+++|||+.. .+++++++.++.|.+
T Consensus 405 pg~~f~~~~~~~~~~~~iRls~~------~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 405 PPTEFYIKEHEKAAENLLRFAVC------KDDAYLENAVERLKL 442 (447)
T ss_dssp CGGGGSCGGGGGGGTTEEEEECC------SCHHHHHHHHHHGGG
T ss_pred CchHhCCCCccCCCCCEEEEEEe------CCHHHHHHHHHHHHH
Confidence 432111000 112578999975 247888888877754
No 75
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=6.1e-25 Score=229.48 Aligned_cols=338 Identities=17% Similarity=0.114 Sum_probs=224.1
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-H
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S 169 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s 169 (520)
...|+|..+++. .++.|++++ ..+.+. ..+|+. .....++++...+++.+.+|.+.+. -+|.+++| +
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~-~~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~t 112 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKPE-VVYYSH------SAGIWELREAFASYYKRRQRVDVKP--ENVLVTNGGS 112 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCS-SCCCCC------TTCCHHHHHHHHHHHHHTSCCCCCG--GGEEEESHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhcC-CCCCCC------CCCcHHHHHHHHHHHHHHhCCCCCH--HHEEEeCCHH
Confidence 356888777653 578999999 877542 223432 1223466666667777767754221 13444555 5
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEEEE
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA 248 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklIi~ 248 (520)
+|+.+++.++++|||+|+++++.|.++.. .+...|. +++.+++++ +++.+ +++|++++++ ++++|++
T Consensus 113 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~~ 180 (409)
T 2gb3_A 113 EAILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGV--KLIPVTRRMEEGFAI-PQNLESFINE-RTKGIVL 180 (409)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTC--EEEEEECCGGGTSCC-CTTGGGGCCT-TEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeccCCCCCCcc-HHHHHHhhCc-CCeEEEE
Confidence 99999999999999999999998765421 2334454 566666653 23445 8889988877 8999999
Q ss_pred cCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---CcccEEEeccCccc--CCCCceEEEee
Q 010008 249 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRGGMIFFK 318 (520)
Q Consensus 249 ~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~aDiv~~S~hK~l--~GprgG~I~~~ 318 (520)
+.++||+ .. ++++|.++|+++|++||+|++|..+ ...+.....+ ...|++++|+||++ +|.|.|+++++
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 259 (409)
T 2gb3_A 181 SNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEI-VFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITR 259 (409)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECS
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECccccc-ccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEEC
Confidence 8888876 33 5899999999999999999997653 3322111112 24689999999998 56778999998
Q ss_pred CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE-ecCCCCCee
Q 010008 319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL-VSGGSDNHL 397 (520)
Q Consensus 319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v-~~~gt~~~~ 397 (520)
++ ++.+.+........ +++....+++..+|+. ....+++..+++.++++.+.+.|.+.|+.+ ..+ ..+.+
T Consensus 260 ~~-----~l~~~l~~~~~~~~--~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~ 330 (409)
T 2gb3_A 260 NE-----ELISHAMKLAQGRL--APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKP-SGAFY 330 (409)
T ss_dssp CH-----HHHHHHHHHHHHSC--CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC-SBSSE
T ss_pred cH-----HHHHHHHHHHhccC--CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCC-CeeEE
Confidence 73 35555443222222 3344444444445543 122346777888899999999998888877 443 23455
Q ss_pred EEEEecCCCCCHHHHHHHHhhc------CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 398 VLVDLRPMGIDGARVEKILDMA------SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 398 ~~vd~~~~g~~~~~~~~~L~~~------gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+++++. +.+..++.+.|.+. ||.+..+...+......++++||+++ .++++++++++.|.++++.
T Consensus 331 ~~~~~~--~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~------~~~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 331 ITAELP--VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV------LEKDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp EEEECS--SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC------SCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC--CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC------CCHHHHHHHHHHHHHHHHH
Confidence 666774 45677777777655 99986432111101123678999865 3579999999999988764
No 76
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.93 E-value=1.5e-24 Score=228.15 Aligned_cols=337 Identities=16% Similarity=0.101 Sum_probs=225.0
Q ss_pred ccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-----CCCCCCcee
Q 010008 94 KSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-----LDENKWGVN 162 (520)
Q Consensus 94 ~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg-----~~~~~~~~~ 162 (520)
+.|+|..+.. ++++.|++++...+......+|+.. ....+++ +.++++++ ++++ +
T Consensus 55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr----~~la~~~~~~~~~~~~~----~ 120 (427)
T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPS------IGFLSSR----EEIASYYHCPEAPLEAK----D 120 (427)
T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCT------TCCHHHH----HHHHHHHCBTTBCCCGG----G
T ss_pred CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCC------CCcHHHH----HHHHHHHhhcCCCCChH----H
Confidence 4588876542 5789999999988875433345331 1123444 56677777 5554 3
Q ss_pred eecCC-hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhh
Q 010008 163 VQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL 240 (520)
Q Consensus 163 V~~~s-Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~ 240 (520)
|.+++ |++|+..++.++++|||+|++++|.|.++.. .+...|. +++.+++++ +++.+|++++++.+++
T Consensus 121 v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~ 190 (427)
T 3dyd_A 121 VILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT--------LAESMGI--EVKLYNLLPEKSWEIDLKQLEYLIDE 190 (427)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHSSCCT
T ss_pred EEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHhcc
Confidence 33444 5599999999999999999999998765431 2334455 555555543 3578999999999987
Q ss_pred cCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--ccc---EEEeccCccc--C
Q 010008 241 FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD---VVTTTTHKSL--R 308 (520)
Q Consensus 241 ~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aD---iv~~S~hK~l--~ 308 (520)
++++|++..++||+ ..+ +++|+++|+++|+++|+|++|. ++...+....++. ..| +++.|+||++ +
T Consensus 191 -~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~-~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~ 268 (427)
T 3dyd_A 191 -KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYG-DMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVP 268 (427)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTT-TCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCG
T ss_pred -CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCch-hhccCCCcCccHHHhCCCCcEEEEeeccccCCCc
Confidence 79999998888887 667 9999999999999999999954 4444332222221 222 6778999974 7
Q ss_pred CCCceEEEeeCCCcch-hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CC
Q 010008 309 GPRGGMIFFKKDPVLG-VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GY 386 (520)
Q Consensus 309 GprgG~I~~~~~~~~~-~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~ 386 (520)
|+|.|+++++++.... .++.+.+...... ..+++....+++..+|+......+++..+++.++++.+.+.|++. |+
T Consensus 269 G~riG~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 346 (427)
T 3dyd_A 269 GWRLGWILIHDRRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGL 346 (427)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred CcceEEEEecCcchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 8889999998631100 1344333322111 123455555566666765333345778888999999999999885 88
Q ss_pred EEecCCCCCeeEEEEecC----CCCCHHHHHHH-HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008 387 KLVSGGSDNHLVLVDLRP----MGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA 461 (520)
Q Consensus 387 ~v~~~gt~~~~~~vd~~~----~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la 461 (520)
.++.+. ...++++.+.. .+.+..++.+. +++.||.+..+..++ .++++||++. .+++++++++
T Consensus 347 ~~~~p~-~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~-----~~~~iRis~~------~~~e~i~~~l 414 (427)
T 3dyd_A 347 RPVRPS-GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE-----YPNFIRVVIT------VPEVMMLEAC 414 (427)
T ss_dssp EEECCS-BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEESC------SCHHHHHHHH
T ss_pred eecCCC-eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC-----CCCeEEEEEC------CCHHHHHHHH
Confidence 876542 34556666642 12455555554 478999995432221 3579999853 4589999999
Q ss_pred HHHHHHHHH
Q 010008 462 DFIHEGVEI 470 (520)
Q Consensus 462 ~~i~~~l~~ 470 (520)
+.|.++++.
T Consensus 415 ~~l~~~l~~ 423 (427)
T 3dyd_A 415 SRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 77
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=9e-25 Score=229.44 Aligned_cols=348 Identities=14% Similarity=0.155 Sum_probs=218.6
Q ss_pred ccceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHH
Q 010008 94 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPA 171 (520)
Q Consensus 94 ~~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A 171 (520)
+.+.|..+++ ++|+.|++++...+.+.+ +||...|..+... .......++++++++|++++ +|.+++| ++|
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a 90 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAW--GNPSSSYVAGRKA-KDIINTARASLAKMIGGKPQ----DIIFTSGGTES 90 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCC--SCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCCGG----GEEEESCHHHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhc--CCCccCcHHHHHH-HHHHHHHHHHHHHHcCCCcC----eEEEeCChHHH
Confidence 4567766554 689999999998886533 5666444333222 23334566899999999765 3444666 599
Q ss_pred HHHHHHhhC--------CCCCEEEEcCCCCCccc-------cccccc--cccccccccceEEEEEcccCCCCCCCCHHHH
Q 010008 172 NFEVYTAIL--------KPHDRIMGLDLPHGGHL-------SHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVDYDML 234 (520)
Q Consensus 172 ~~~~l~all--------~pGD~Vl~~~~~~~ghl-------s~g~~~--~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~l 234 (520)
+.+++.+++ +|||+|++++|.|.++- +|.... ........|. +++.++++++++.+|+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l 168 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA--EVTFVPVSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC--EEEEECCCTTTSSCCHHHH
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc--EEEEEecCcccCCcCHHHH
Confidence 999998886 59999999998875431 011000 0000011344 6667777644678999999
Q ss_pred HHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhC----------CEEEEechhhcccccccccCCCCC--cccEEE
Q 010008 235 EKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG----------ALLMMDMAHISGLVAASVVADPFK--YCDVVT 300 (520)
Q Consensus 235 e~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g----------~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~ 300 (520)
++++++ ++++|+++.++||+ ..|+++|.++|+++| ++|++|++|..|... ..+. ++|+++
T Consensus 169 ~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~-----~~~~~~~~d~~~ 242 (432)
T 3a9z_A 169 LAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR-----VDVEDLGVDFLT 242 (432)
T ss_dssp HHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC-----CCHHHHCCSEEE
T ss_pred HHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcc-----cChhhcCCCEEE
Confidence 999987 89999999888876 789999999999999 999999998765321 1121 579999
Q ss_pred eccCcccCCCCceEEEeeCCCcchhhH-HHhhcccCCC------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008 301 TTTHKSLRGPRGGMIFFKKDPVLGVEL-ESAINNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373 (520)
Q Consensus 301 ~S~hK~l~GprgG~I~~~~~~~~~~~l-~~~i~~~~~p------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n 373 (520)
+|+||++ ||+.|+++++++ . ...+....+. ...++++...++++..+++... .++++..+++.++
T Consensus 243 ~s~~K~~-g~~~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~~~~~ 314 (432)
T 3a9z_A 243 IVGHKFY-GPRIGALYVRGV------GKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAHMRDI 314 (432)
T ss_dssp EEGGGTT-CCSCEEEEETTB------TTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred EehhHhc-CCcceEEEEccc------cccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 9999986 799999999873 2 2223221111 1135567777777777777654 3567788889999
Q ss_pred HHHHHHHHHH-CCCEEe--cC--C-C-CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC--CCCC----------CCC
Q 010008 374 CRALASRLVE-LGYKLV--SG--G-S-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNS--VPGD----------KSA 434 (520)
Q Consensus 374 a~~l~~~L~~-~G~~v~--~~--g-t-~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~--~Pg~----------~~~ 434 (520)
++++.+.|.+ .|+.+. .+ + . ...++.+.+...+.++..+.+.| .+|.++.+. .++. .+-
T Consensus 315 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~ 392 (432)
T 3a9z_A 315 RDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGI 392 (432)
T ss_dssp HHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTC
T ss_pred HHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCC
Confidence 9999999987 466543 21 1 1 12234445543334555555544 366665431 1110 000
Q ss_pred ---CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 435 ---LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 435 ---~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
...++|||+++..+ +++|++++++.|+++++.
T Consensus 393 ~~~~~~~~iRis~~~~~----t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 393 PVDVARNAVRLSVGRST----TRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp CHHHHTTEEEEECCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred CccccCceEEEEcCCCC----CHHHHHHHHHHHHHHHHH
Confidence 01378999987544 489999999999988753
No 78
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=8.6e-25 Score=226.47 Aligned_cols=335 Identities=14% Similarity=0.135 Sum_probs=224.1
Q ss_pred ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHH-HHHHHHHHHHHHcC--CCCCCCceeeecCCh
Q 010008 94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-LETLCQKRALAAFN--LDENKWGVNVQPLSG 168 (520)
Q Consensus 94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~-lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG 168 (520)
+.|+|..+++ ..++.|.+++...+.+. ..+|+. + ..+ +++...+++.+.+| ++++ +|.+++|
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~~lr~~la~~l~~~~g~~~~~~----~v~~t~g 95 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHG-VFGYSR-----W---KNDEFLAAIAHWFSTQHYTAIDSQ----TVVYGPS 95 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCCC-----S---CCHHHHHHHHHHHHHHSCCCCCGG----GEEEESC
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCC-CCCCCC-----C---ChHHHHHHHHHHHHHhcCCCCCHH----HEEEcCC
Confidence 5678876665 36799999998887532 223432 1 234 66566677777888 4454 4555666
Q ss_pred H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHHHHHhhhcCCcE
Q 010008 169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKL 245 (520)
Q Consensus 169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~le~~i~~~~pkl 245 (520)
+ +|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++|++++++.++++
T Consensus 96 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~ 165 (390)
T 1d2f_A 96 VIYMVSELIRQWSETGEGVVIHTPAYDAFYK--------AIEGNQR--TVMPVALEKQADGWFCDMGKLEAVLAKPECKI 165 (390)
T ss_dssp HHHHHHHHHHHSSCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECEECSSSEECCHHHHHHHHTSTTEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH--------HHHHCCC--EEEEeecccCCCccccCHHHHHHHhccCCCeE
Confidence 5 89999999999999999999988765421 2233454 5556666533 23599999999997557899
Q ss_pred EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----c-ccEEEeccCccc--CCCCce
Q 010008 246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----Y-CDVVTTTTHKSL--RGPRGG 313 (520)
Q Consensus 246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~-aDiv~~S~hK~l--~GprgG 313 (520)
|+++.++||+ ..+ +++|+++|+++|++||+|++|... ...+....++. . .|. +.|+||++ +|.|.|
T Consensus 166 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G 243 (390)
T 1d2f_A 166 MLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM-VWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGA 243 (390)
T ss_dssp EEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC-BCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCE
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhhe
Confidence 9888888886 444 889999999999999999997643 33332111211 1 277 99999987 577889
Q ss_pred EEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-C-CCEEec
Q 010008 314 MIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLVS 390 (520)
Q Consensus 314 ~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~-G~~v~~ 390 (520)
+++++++ ++.+.+..... ....++++....++...+++.. ...+++..+++.++++.+.+.|.+ . |+.++.
T Consensus 244 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 317 (390)
T 1d2f_A 244 YGIIENS-----SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELNWQI 317 (390)
T ss_dssp EEEECSH-----HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred EEEECCH-----HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec
Confidence 9998643 56665544322 1112344555555555566642 223467778888899999999987 3 777654
Q ss_pred CCCCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 391 ~gt~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+ ..+.++++++...+++..++.+.|. +.||.+..+...+ +..++++||+... +++++++..+.|.++++
T Consensus 318 ~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~~Ris~~~------~~~~l~~~l~~l~~~l~ 387 (390)
T 1d2f_A 318 P-QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG---EEGRGFVRLNAGC------PRSKLEKGVAGLINAIR 387 (390)
T ss_dssp C-SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC---GGGTTEEEEECCS------CHHHHHHHHHHHHHHHH
T ss_pred C-CccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccC---CCCCCeEEEEecC------CHHHHHHHHHHHHHHHH
Confidence 3 2345556787543356777777776 7899995432111 1235789999763 36888888888887765
No 79
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.93 E-value=7.9e-25 Score=225.12 Aligned_cols=328 Identities=15% Similarity=0.049 Sum_probs=220.1
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-H
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S 169 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s 169 (520)
.+.|+|..+++. .++.+.+++...+.+. ..+|+. .....++++...+++.+.+|.+.+. -+|.+++| +
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~~~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~~ 99 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEG-KTHYTD------SRGILELREKISELYKDKYKADIIP--DNIIITGGSS 99 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCC------TTCCHHHHHHHHHHHHHHSSCCCCG--GGEEEESSHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcC-ccCCCC------CCCCHHHHHHHHHHHHHHhCCCCCh--hhEEECCChH
Confidence 356888877753 5789999998887542 123332 1123466666667777777754221 13444555 5
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
+|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++ +|++++++++++ ++++|+++
T Consensus 100 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~-------~d~~~l~~~l~~-~~~~v~~~ 161 (370)
T 2z61_A 100 LGLFFALSSIIDDGDEVLIQNPCYPCYKN--------FIRFLGA--KPVFCD-------FTVESLEEALSD-KTKAIIIN 161 (370)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEEC-------SSHHHHHHHCCS-SEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeC-------CCHHHHHHhccc-CceEEEEc
Confidence 99999999999999999999998865421 2233454 555543 789999999987 89999998
Q ss_pred CCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC--CC---CcccEEEeccCccc--CCCCceEEEeeCC
Q 010008 250 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSL--RGPRGGMIFFKKD 320 (520)
Q Consensus 250 ~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~---~~aDiv~~S~hK~l--~GprgG~I~~~~~ 320 (520)
.++||+ ..+.+ |.++|+++|+++|+|++|..+ ...+...+ .+ .+.|++++|+||++ +|.|.|++++++
T Consensus 162 ~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~- 238 (370)
T 2z61_A 162 SPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGL-VYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND- 238 (370)
T ss_dssp SSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTC-BSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH-
T ss_pred CCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhc-ccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH-
Confidence 888875 78888 999999999999999997653 33221111 11 14689999999998 567789999988
Q ss_pred CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008 321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 400 (520)
Q Consensus 321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v 400 (520)
++.+.+........ ++++....+++..+|+.......++..+++.++++.+.+.|.+.|+++..+. .++++++
T Consensus 239 -----~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~ 311 (370)
T 2z61_A 239 -----EIIEAILKLQQNLF-ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPI-GAYYVFP 311 (370)
T ss_dssp -----HHHHHHHHHHHHHT-SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-BTTEECC
T ss_pred -----HHHHHHHHHHhhcc-cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-cceEEEE
Confidence 66666544322221 2333444444444454311223466778888999999999988888775432 3455566
Q ss_pred EecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 401 DLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 401 d~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
++.. +..++.+.|. ++||.+..+...+ ...++++||++. .+++++++.++.|.++++
T Consensus 312 ~~~~---~~~~~~~~l~~~~gi~v~~g~~f~---~~~~~~~Ri~~~------~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 312 NIGE---DGREFAYKLLKEKFVALTPGIGFG---SKGKNYIRISYA------NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp BCSS---CHHHHHHHHHHHHCEECEEGGGGC---GGGSSBEEEECC------SCHHHHHHHHHHHHHHHC
T ss_pred ecCC---CHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEEEe------CCHHHHHHHHHHHHHHHh
Confidence 6643 5667777775 8999995432111 112578999976 247899999998887653
No 80
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.93 E-value=3.3e-25 Score=231.38 Aligned_cols=338 Identities=15% Similarity=0.103 Sum_probs=225.3
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 170 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~ 170 (520)
+.|+|..+++. .++.|++++...+.+....+|+.. .| ..++++...+++++.+|++.+.. -+|.+++|+ +
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g---~~~lr~~ia~~~~~~~g~~~~~~-~~v~~t~G~~~ 120 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAF---HG---KEAFKQAIVDFYQRQYNVTLDKE-DEVCILYGTKN 120 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCT---TC---CHHHHHHHHHHHHHHHCCCCCTT-TSEEEESSHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCC---CC---CHHHHHHHHHHHHHHhCCCCCCc-ccEEEcCCcHH
Confidence 45788777754 578999999887743212234321 11 24566666677777779752100 034446665 8
Q ss_pred HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008 171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 250 (520)
Q Consensus 171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~ 250 (520)
|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++++.+|+++|++++++ ++++|+++.
T Consensus 121 al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~ 189 (404)
T 2o1b_A 121 GLVAVPTCVINPGDYVLLPDPGYTDYLA--------GVLLADG--KPVPLNLEPPHYLPDWSKVDSQIID-KTKLIYLTY 189 (404)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCSSHHH--------HHHHTTC--EEEEEECCTTTCCCCGGGSCHHHHH-HEEEEEECS
T ss_pred HHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCcccCcCCHHHHHHhhcc-CceEEEEcC
Confidence 9999999999999999999998765431 2233454 5666666643456899999998876 799999988
Q ss_pred CCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEee
Q 010008 251 SAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFK 318 (520)
Q Consensus 251 s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~ 318 (520)
++||+ .. ++++|.++|+++|++||+|++|..+ ...+...+.+. ..+++++|+||++ +|+|.|+++++
T Consensus 190 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 268 (404)
T 2o1b_A 190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAF-GFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN 268 (404)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTC-BSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC
Confidence 88876 44 3788999999999999999997643 33231111111 3468899999998 57788999997
Q ss_pred CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008 319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV 398 (520)
Q Consensus 319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~ 398 (520)
+ ++.+.+....... ..+++....+++..+|+.. ...+++..+++.++++.+.+.|.+.|+++..+ ..+.++
T Consensus 269 ~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~ 339 (404)
T 2o1b_A 269 K------DMIQALKKYQTHT-NAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHA-KGGIYV 339 (404)
T ss_dssp H------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECC-CBSSEE
T ss_pred H------HHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCC-CcceEE
Confidence 7 6666654432111 1233444444444566543 23456777888889999999998888887654 234557
Q ss_pred EEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 399 LVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 399 ~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
++++. .+++..++.+.| ++.||.+..+...+ ...++++||++.. ++++++++++.|.++++
T Consensus 340 ~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~iRis~~~------~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 340 WLETP-PGYDSEQFEQFLVQEKSILVAPGKPFG---ENGNRYVRISLAL------DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp EEECC-TTCCHHHHHHHHHHHHCEECEESGGGC---GGGTTEEEEECCS------CTTHHHHHHHHHHGGGG
T ss_pred EEeCC-CCCCHHHHHHHHHHHCCEEEeCchhhC---cCCCCeEEEEEcC------CHHHHHHHHHHHHHHHH
Confidence 77774 355666666665 57899995432111 1135789999763 36788888888876654
No 81
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.93 E-value=6e-24 Score=225.23 Aligned_cols=339 Identities=9% Similarity=0.001 Sum_probs=227.1
Q ss_pred CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCC--CceeeecCChHHHHHHHHHhhC
Q 010008 103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK--WGVNVQPLSGSPANFEVYTAIL 180 (520)
Q Consensus 103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~--~~~~V~~~sGs~A~~~~l~all 180 (520)
.+.++.+.+++.+.+..... + |...+...++|+.+++++++++|++.+. ...-+...+|++||+.++.++.
T Consensus 52 ~~~~~~v~e~~~~a~~~~~~-~------~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~ 124 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINKNWI-D------KEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK 124 (452)
T ss_dssp CCCCHHHHHHHHHTTTCBTT-C------TTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccCCC-C------hhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH
Confidence 35678899999877643211 1 1122446688888999999999998753 1012334556699999988875
Q ss_pred C--------CC-----CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008 181 K--------PH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 181 ~--------pG-----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi 247 (520)
+ +| |+|++++ .|... . +.+...|. +++.++++++++.+|+++|++++++ +|++|+
T Consensus 125 ~~~~~~~~~~G~~~~~~~vi~~~-~h~~~---~-----~~~~~~G~--~v~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~ 192 (452)
T 2dgk_A 125 WRWRKRMEAAGKPTDKPNLVCGP-VQICW---H-----KFARYWDV--ELREIPMRPGQLFMDPKRMIEACDE-NTIGVV 192 (452)
T ss_dssp HHHHHHHHHTTCCCSCCEEEESS-CCHHH---H-----HHHHHTTC--EEEECCCBTTBCSCCHHHHHHHCCT-TEEEEE
T ss_pred HHHHHHHHhcCCCCCCcEEEECC-CcHHH---H-----HHHHHcCc--eEEEEecCCCCCeECHHHHHHHHhh-CCEEEE
Confidence 4 66 5888876 54321 1 23344565 6777777754689999999999987 899999
Q ss_pred EcCCCCCC--CCCHHHHHHHHHHh------CCEEEEechhhccccc--ccccCCC--CCcccEEEeccCcccC-CCCceE
Q 010008 248 AGASAYPR--DFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVADP--FKYCDVVTTTTHKSLR-GPRGGM 314 (520)
Q Consensus 248 ~~~s~~p~--~~d~~~i~~ia~~~------g~~li~D~Ah~~gli~--~~~~~~p--~~~aDiv~~S~hK~l~-GprgG~ 314 (520)
++.++|++ ..|+++|.++|+++ |+++++|+||..+... .+..+.. ..++|++++++||++. +++.|+
T Consensus 193 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~ 272 (452)
T 2dgk_A 193 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGW 272 (452)
T ss_dssp CBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred EEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEE
Confidence 98887775 78999999999996 9999999997655431 1111111 2379999999999874 456699
Q ss_pred EEeeCCCcchhhHH-Hhhcc-cCCC-------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-
Q 010008 315 IFFKKDPVLGVELE-SAINN-AVFP-------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL- 384 (520)
Q Consensus 315 I~~~~~~~~~~~l~-~~i~~-~~~p-------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~- 384 (520)
++++++ ++. +.+.. ..+. +..++......+++..+++.+...++++..++..++++++.+.|.+.
T Consensus 273 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~ 347 (452)
T 2dgk_A 273 VIWRDE-----EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLG 347 (452)
T ss_dssp EEESSG-----GGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCH-----HHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999763 222 22211 1111 12334333344455556655444567888899999999999999885
Q ss_pred CCEEecCC---CCCeeEEEEecCC---CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008 385 GYKLVSGG---SDNHLVLVDLRPM---GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV 458 (520)
Q Consensus 385 G~~v~~~g---t~~~~~~vd~~~~---g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~ 458 (520)
|++++.++ ...+++.+.+... .++..++.+.|.+.||.+.....|... .....+|+++...+ +++|++
T Consensus 348 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~--~~~~~lRis~~~~~----t~e~id 421 (452)
T 2dgk_A 348 PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA--TDIVVMRIMCRRGF----EMDFAE 421 (452)
T ss_dssp SEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTC--TTCEEEEEECCTTC----CHHHHH
T ss_pred CeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCccc--CCeEEEEEEecCCC----CHHHHH
Confidence 58887542 2334555555432 245678888998999976432223221 12457999976544 489999
Q ss_pred HHHHHHHHHHHHH
Q 010008 459 AIADFIHEGVEIT 471 (520)
Q Consensus 459 ~la~~i~~~l~~~ 471 (520)
++++.|++++...
T Consensus 422 ~li~~l~~~~~~~ 434 (452)
T 2dgk_A 422 LLLEDYKASLKYL 434 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 82
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.93 E-value=5.2e-25 Score=229.67 Aligned_cols=342 Identities=16% Similarity=0.071 Sum_probs=223.7
Q ss_pred hccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008 93 FKSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS 167 (520)
Q Consensus 93 ~~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s 167 (520)
.+.|+|..+++ ..++.+.+++...+.+.+ .+|+. .....++++...+++.+.+|+..+. -+|.+++
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~l~~~la~~l~~~~g~~~~~--~~v~~t~ 108 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGD------SEGLPELRKAIVEREKRKNGVDITP--DDVRVTA 108 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEES
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCcHHHHHHHHHHHHHhcCCCCCH--HHEEEcC
Confidence 35688877766 467899999988875432 23332 1223466666667777777654321 1455566
Q ss_pred hH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcE
Q 010008 168 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKL 245 (520)
Q Consensus 168 Gs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pkl 245 (520)
|+ +|+.+++.++++|||+|++.+|.|.++. ..+...|. +++.+++++ +++.+|+++|++++++ ++++
T Consensus 109 g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~ 177 (406)
T 1xi9_A 109 AVTEALQLIFGALLDPGDEILVPGPSYPPYT--------GLVKFYGG--KPVEYRTIEEEDWQPDIDDIRKKITD-RTKA 177 (406)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHHTTC--EEEEEEEEGGGTSEECHHHHHHHCCT-TEEE
T ss_pred ChHHHHHHHHHHhCCCCCEEEEcCCCCccHH--------HHHHHcCC--EEEEeecCCCcCCcCCHHHHHHhhCc-CceE
Confidence 65 9999999999999999999999875432 12234455 556666654 3467899999999987 8999
Q ss_pred EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC--C-Ccc-cEEEeccCccc--CCCCceE
Q 010008 246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F-KYC-DVVTTTTHKSL--RGPRGGM 314 (520)
Q Consensus 246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~-~~a-Div~~S~hK~l--~GprgG~ 314 (520)
|+++.++||+ ..+ +++|.++|+++|++||+|++|..+ ...+..... + ... |++++|+||++ +|+|.|+
T Consensus 178 v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 256 (406)
T 1xi9_A 178 IAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLM-TYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGY 256 (406)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTC-BSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEE
T ss_pred EEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccc-ccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEE
Confidence 9988888876 444 899999999999999999997653 322211110 1 235 78999999998 4778899
Q ss_pred EE--eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC
Q 010008 315 IF--FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG 391 (520)
Q Consensus 315 I~--~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~ 391 (520)
++ .+++. ..++.+.+....... .+++....+++..+|+.. ....++..+++.++++.+.+.|.+. |+.+..+
T Consensus 257 ~~~~~~~~~--~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 331 (406)
T 1xi9_A 257 MYFVDPENK--LSEVREAIDRLARIR--LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKP 331 (406)
T ss_dssp EEEECTTCT--THHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC
T ss_pred EEEecCchh--HHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecC
Confidence 98 66510 002333333211111 122333344444556532 2335677788889999999999885 7776543
Q ss_pred CCCCeeEEEEecCC-CCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 392 GSDNHLVLVDLRPM-GIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 392 gt~~~~~~vd~~~~-g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
..+.+.++++... +.+..++.+.| ++.||.+..+...+ ...++++||++. .++++++++++.|.++++
T Consensus 332 -~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~lRis~~------~~~~~i~~~~~~l~~~l~ 401 (406)
T 1xi9_A 332 -QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFG---EYGAGHFRAVFL------PPIEILEEAMDRFEKFMK 401 (406)
T ss_dssp -CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGC---GGGTTBEEEECC------SCHHHHHHHHHHHHHHHH
T ss_pred -CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcC---CCCCCEEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 2344555566431 45677777666 48999985432111 112578999975 347999999999988875
Q ss_pred H
Q 010008 470 I 470 (520)
Q Consensus 470 ~ 470 (520)
.
T Consensus 402 ~ 402 (406)
T 1xi9_A 402 E 402 (406)
T ss_dssp H
T ss_pred H
Confidence 3
No 83
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.93 E-value=2.5e-25 Score=230.60 Aligned_cols=321 Identities=10% Similarity=0.040 Sum_probs=210.7
Q ss_pred CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH-HHHcC-CCCCCCceeeecCChHHHHHHHHHhh-C
Q 010008 104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA-LAAFN-LDENKWGVNVQPLSGSPANFEVYTAI-L 180 (520)
Q Consensus 104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~-~~lfg-~~~~~~~~~V~~~sGs~A~~~~l~al-l 180 (520)
.+++.+++++...+.+.+ |+...+..+++| +.+ ++++| .+. .|.++||++|+.+++.++ +
T Consensus 13 ~~~~~i~~a~~~~~~~~~--------~~~~~~~~~~l~----~~~~a~~~g~~~~-----~v~~~sgt~al~~al~~l~~ 75 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHI--------YTNYGPINQRFE----QTIMSGFFQNRGA-----VTTVANATLGLMAAIQLKKR 75 (377)
T ss_dssp CCGGGGHHHHHHHHHHTC--------CSSSCHHHHHHH----HHHHHHTSTTCSE-----EEEESCHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHcCC--------cccCCHHHHHHH----HHHHHHHhCCCCe-----EEEeCCHHHHHHHHHHHcCC
Confidence 467888899888876543 111124456666 567 88999 332 466789999999999998 9
Q ss_pred CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHh-hhcC--CcEEEEcCCCCCCCC
Q 010008 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA-ILFR--PKLIIAGASAYPRDF 257 (520)
Q Consensus 181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i-~~~~--pklIi~~~s~~p~~~ 257 (520)
+|||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++++ ++ + ||+|+..++ ++...
T Consensus 76 ~~Gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~~-~~~tk~v~~~~~-~G~~~ 143 (377)
T 3ju7_A 76 KKGKYALMPSFTFPATPL--------AAIWCGL--EPYFIDISIDDWYMDKTVLWDKIEEL-KEEVAIVVPYAT-FGSWM 143 (377)
T ss_dssp TTCCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHHHHH-GGGEEEECCBCG-GGBCC
T ss_pred CCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHHHhcC-CCCceEEEEECC-CCCcc
Confidence 999999999998765431 2344565 77788887678899999999988 45 6 888875432 34578
Q ss_pred CHHHHHHHHHHhCCEEEEechhhcccccccccC-CCCCcccEEEec--cCcccCCCCceEEEeeCCCcchhhHHHhhccc
Q 010008 258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESAINNA 334 (520)
Q Consensus 258 d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p~~~aDiv~~S--~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~ 334 (520)
|+++|.++|+ +|++|++|++|..|....+... .. .+|+.++| .||++.++.||+++++++ ++.++++..
T Consensus 144 ~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~--~~d~~~~S~~~~K~l~~g~gG~~~~~~~-----~l~~~~~~~ 215 (377)
T 3ju7_A 144 NLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQD--FSGMIIYSFHATKPFGIGEGGLIYSKNE-----EDIQRIKRM 215 (377)
T ss_dssp CCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTT--CSSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHHHHHH
T ss_pred CHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCC--CCcEEEEECCCCCcCCCCCcEEEEECCH-----HHHHHHHHH
Confidence 9999999999 9999999999988865443221 11 35665555 579998888899999875 566655433
Q ss_pred CCCCC--------CC-CChH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC---CEEecCCC--CCee-E
Q 010008 335 VFPGL--------QG-GPHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG---YKLVSGGS--DNHL-V 398 (520)
Q Consensus 335 ~~p~~--------~g-~p~~-~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G---~~v~~~gt--~~~~-~ 398 (520)
...+. .| +..+ ...++++ +..+ ..++++.++..++++.+.+.|.+.+ +.+....+ ..|. +
T Consensus 216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~--~~~l--~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 291 (377)
T 3ju7_A 216 GNFGFDTNRECTMMGFNCKMSEYAAAIG--IATM--KKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFM 291 (377)
T ss_dssp TBTTBCTTSCBCSSCCBCCCCHHHHHHH--HHHH--HTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSE
T ss_pred HhcCCCCCCceeeccccCCCCHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEE
Confidence 22221 01 1111 1222222 2222 3456778888899999999998854 22222111 2232 2
Q ss_pred EEEecCCCCCHHHHHHHHhhcCeEEcCCCC-CCCC-CCC--------------CCCEEEEccCCccccCCCHHHHHHHHH
Q 010008 399 LVDLRPMGIDGARVEKILDMASITLNKNSV-PGDK-SAL--------------VPGGIRIGSPAMTTRGFSEKEFVAIAD 462 (520)
Q Consensus 399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~-Pg~~-~~~--------------~~~giRig~~~~tt~g~~~~d~~~la~ 462 (520)
.+.+. .+.+.+.+.+.|.+.||.++..+. |.+. +.+ ..+.||+.+.. .++++|++++++
T Consensus 292 ~~~~~-~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~----~~t~~di~~v~~ 366 (377)
T 3ju7_A 292 PILCP-EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWE----GMTKEIVEQIVI 366 (377)
T ss_dssp EEECC-TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCT----TCCHHHHHHHHH
T ss_pred EEEeC-ChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCC----CCCHHHHHHHHH
Confidence 33332 233578899999999999987652 3222 111 12358887653 467999999999
Q ss_pred HHHHHHHH
Q 010008 463 FIHEGVEI 470 (520)
Q Consensus 463 ~i~~~l~~ 470 (520)
.|.+++..
T Consensus 367 ~l~~~~~~ 374 (377)
T 3ju7_A 367 CLGQKVVS 374 (377)
T ss_dssp HHTC----
T ss_pred HHHHHHhc
Confidence 99887764
No 84
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.93 E-value=1.5e-25 Score=238.34 Aligned_cols=293 Identities=13% Similarity=0.137 Sum_probs=208.1
Q ss_pred HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCE---EEEcCCCCCccccccccccccccccccceE---E
Q 010008 144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYF---E 216 (520)
Q Consensus 144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~---Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~---~ 216 (520)
+++++++++|++++ +|.+++|+ +++.+++.++++|||. |++.++.|.+... .+. ..+...|... .
T Consensus 116 l~~~la~~~g~~~~----~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~-~~~---~~~~~~G~~~~~~~ 187 (465)
T 3e9k_A 116 IVGLMKDIVGANEK----EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHY-AIE---SQLQLHGLNIEESM 187 (465)
T ss_dssp HHGGGHHHHTCCGG----GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHH-HHH---HHHHHTTCCHHHHE
T ss_pred HHHHHHHHcCCCcC----CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHH-HHH---HHHHHcCCcceeee
Confidence 45789999999875 34446655 8999999999887765 9999998865321 010 0112233311 1
Q ss_pred EEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCC
Q 010008 217 SMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP 292 (520)
Q Consensus 217 ~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p 292 (520)
+...+.+ +++.+|+++|+++++++ ++++|++++++|++ ..|+++|.++|+++|+++++|++|..|.+..++...
T Consensus 188 v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~- 265 (465)
T 3e9k_A 188 RMIKPRE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW- 265 (465)
T ss_dssp EEECCCT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH-
T ss_pred EEEecCC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc-
Confidence 1122333 45789999999999732 78999999888875 789999999999999999999999887653322111
Q ss_pred CCcccEEEeccCccc-CCCCc-eEEEeeCCCcchhhHHHhhcccC-----------------C-------CCCCCCChHH
Q 010008 293 FKYCDVVTTTTHKSL-RGPRG-GMIFFKKDPVLGVELESAINNAV-----------------F-------PGLQGGPHNH 346 (520)
Q Consensus 293 ~~~aDiv~~S~hK~l-~Gprg-G~I~~~~~~~~~~~l~~~i~~~~-----------------~-------p~~~g~p~~~ 346 (520)
++|++++|+||++ .||.+ |+++++++ +.+.+.... + ....|+++..
T Consensus 266 --~~D~~~~s~~K~l~~gp~~~g~l~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 337 (465)
T 3e9k_A 266 --GVDFACWCSYKYLNAGAGGIAGAFIHEK------HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPIL 337 (465)
T ss_dssp --TCCEEEECSSSTTCCCTTCCCEEEECGG------GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHH
T ss_pred --CCCEEEECcccccccCCCceEEEEEcHH------HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHH
Confidence 5899999999999 48876 99998873 332222110 0 0113578888
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-----------CCCEEecCCC---CCeeEEEEecCCCCCHHHH
Q 010008 347 TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-----------LGYKLVSGGS---DNHLVLVDLRPMGIDGARV 412 (520)
Q Consensus 347 ~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-----------~G~~v~~~gt---~~~~~~vd~~~~g~~~~~~ 412 (520)
.++++.++++.+...+.++..++..++++++.+.|.+ .|++++.+.. ...++++.+. .+..++
T Consensus 338 ~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~---~~~~~l 414 (465)
T 3e9k_A 338 LVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS---VPNKDV 414 (465)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC---CTTCCH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec---CCHHHH
Confidence 8888888888765445688888999999999999987 6888876421 1345566664 245667
Q ss_pred HHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 413 EKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 413 ~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
.+.|.+.||.++.. .++.||++. +.+++ ++|++++++.|+++++.
T Consensus 415 ~~~L~~~Gi~v~~~---------~~~~iRis~~~~~~t----~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 415 FQELEKRGVVCDKR---------NPNGIRVAPVPLYNS----FHDVYKFTNLLTSILDS 460 (465)
T ss_dssp HHHHHTTTEECEEE---------TTTEEEEBCCTTTCC----HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCEEEecC---------CCCEEEEeCcccCCC----HHHHHHHHHHHHHHHHh
Confidence 88888899998521 257999997 55554 89999999999988763
No 85
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.93 E-value=7.3e-25 Score=224.72 Aligned_cols=330 Identities=13% Similarity=0.092 Sum_probs=217.2
Q ss_pred ccceEecCCCCChHHHHHHHhhhhhccCCCCCC---CCCCCCcchhHHHHHHHHHHHHHHHcCCCCC-CCceeeecCCh-
Q 010008 94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLP---GKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSG- 168 (520)
Q Consensus 94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p---~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~-~~~~~V~~~sG- 168 (520)
..+.+.+++.++|+.|++++...+.+.+..|.. ...+ +..+ .++.+.+++++++++|++.+ + .|..++|
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~la~~~g~~~~~~---~i~~t~g~ 77 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVY-EAVHNEAQARLLALLGNPTGYK---VLFIQGGA 77 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHH-HHHHHHHHHHHHHHTTCCSSEE---EEEESSHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHH-HHHHHHHHHHHHHHhCCCCCcE---EEEECCCc
Confidence 346777888899999999999887643222211 0111 2223 33334677899999999753 2 1334555
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcCCcEEE
Q 010008 169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~pklIi 247 (520)
++|+.+++.++++|||+|+++++.+.++ .+. ..+...| ....++++.+.+. ..+|.++++ +++ +||+|+
T Consensus 78 t~a~~~~~~~l~~~gd~vl~~~~~~~~~---~~~---~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~t~~v~ 147 (362)
T 2c0r_A 78 STQFAMIPMNFLKEGQTANYVMTGSWAS---KAL---KEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-NAAYLH 147 (362)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHH---HHH---HHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-TEEEEE
T ss_pred hHHHHHHHHhcCCCCCeEEEEecCcHhH---HHH---HHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-CcCEEE
Confidence 5999999999999999999887543222 110 0122234 3444443211112 246776654 555 799999
Q ss_pred EcCCCCCC--C-CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008 248 AGASAYPR--D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL 323 (520)
Q Consensus 248 ~~~s~~p~--~-~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~ 323 (520)
+++++||+ . .|+++| +|+++++|++|..|... .++...|++++|+||++ ||.| |++++++
T Consensus 148 ~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~-----~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~---- 211 (362)
T 2c0r_A 148 LTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRP-----FDLNQFGLVYAGAQKNL-GPSGVTVVIVRE---- 211 (362)
T ss_dssp EESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSC-----CCGGGCSEEEEETTTTT-CCSSCEEEEEEG----
T ss_pred EeCCcCccceeccccccc------CCCEEEEEChhhccCCc-----cchhHCcEEEEeccccc-cCcCcEEEEEcH----
Confidence 98888776 2 466665 89999999999876432 12333499999999999 5777 9999988
Q ss_pred hhhHHHhhccc---CC--------CCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-C-EEe
Q 010008 324 GVELESAINNA---VF--------PGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-KLV 389 (520)
Q Consensus 324 ~~~l~~~i~~~---~~--------p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-~-~v~ 389 (520)
++.+.+... .+ ....++++...++++..|++.+... ++++..+++.++++++.+.|.+.| + ++.
T Consensus 212 --~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 289 (362)
T 2c0r_A 212 --DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGC 289 (362)
T ss_dssp --GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEES
T ss_pred --HHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 444444321 00 0224577777888888888876543 568888999999999999999877 6 775
Q ss_pred cCC--CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 390 SGG--SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 390 ~~g--t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
.+. ....++++.+. .+.+..++.+.|++.||.+ .||... .++|||++...+ +++|++++++.|+++
T Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gi~~----~~g~~~---~~~iRis~~~~~----~~e~i~~l~~~l~~~ 357 (362)
T 2c0r_A 290 VDVDSRSDMNITFRLA-SEELEKEFVKASEQEGFVG----LKGHRS---VGGLRASIYNAV----PYESCEALVQFMEHF 357 (362)
T ss_dssp SCGGGBCSSEEEEECS-CHHHHHHHHHHHHHTTEES----CBCCTT---TCSEEEECCTTS----CHHHHHHHHHHHHHH
T ss_pred CChHHcCCcEEEEEcC-CcchHHHHHHHHHHCCCee----ccCCCC---CCEEEEECCCCC----CHHHHHHHHHHHHHH
Confidence 321 12234555553 2334567888899999976 344321 457999986544 489999999999887
Q ss_pred HH
Q 010008 468 VE 469 (520)
Q Consensus 468 l~ 469 (520)
++
T Consensus 358 ~~ 359 (362)
T 2c0r_A 358 KR 359 (362)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 86
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.93 E-value=2.1e-24 Score=223.34 Aligned_cols=321 Identities=13% Similarity=0.109 Sum_probs=213.5
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCC
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 183 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pG 183 (520)
+++.+++++...+.... .+ |+.+ +..++++ +.+++++|.+. .|.++||++|+.+++.++ ++||
T Consensus 15 ~~~~~~~a~~~~l~~~~-~~-----~~~~-~~~~~l~----~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~g 78 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ-WW-----RMGG-DEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG 78 (388)
T ss_dssp CCHHHHHHHHHHHHTSC-CB-----TTTC-SHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHcCC-ee-----ecCC-HHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence 34899999988876521 01 2222 3345555 67888999863 466799999999999999 9999
Q ss_pred CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHH
Q 010008 184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPR 261 (520)
Q Consensus 184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~ 261 (520)
|+|++++++|.+... .+...|. +++.++++++++.+|+++|++++++ ++++|+ ++|++ ..|+++
T Consensus 79 d~Vi~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~---~~n~tG~~~~l~~ 144 (388)
T 1b9h_A 79 TEVIVPAFTFISSSQ--------AAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM---PVHMAGLMADMDA 144 (388)
T ss_dssp CEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC---CBCGGGCCCCHHH
T ss_pred CEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEE---EeCCccCcCCHHH
Confidence 999999998765431 2334454 6777788766688999999999977 788887 44443 789999
Q ss_pred HHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhH--HHhhcccCCC--
Q 010008 262 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL--ESAINNAVFP-- 337 (520)
Q Consensus 262 i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l--~~~i~~~~~p-- 337 (520)
|.++|+++|++||+|++|..|....+.....+..+++.++|.||+++|+++|+++++++ .+ .+.+......
T Consensus 145 i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~-----~~~~~~~~~~~~~~~~ 219 (388)
T 1b9h_A 145 LAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG-----ETEKYETAFLRHSCGR 219 (388)
T ss_dssp HHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT-----CHHHHHHHHHHTBTTC
T ss_pred HHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH-----HHHHHHHHHHHHhCCC
Confidence 99999999999999999988776533211111113344455669998999999999874 24 3333211100
Q ss_pred ---------CCCCC---ChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCC-----CCCeeEE
Q 010008 338 ---------GLQGG---PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG-----SDNHLVL 399 (520)
Q Consensus 338 ---------~~~g~---p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~g-----t~~~~~~ 399 (520)
...|+ ++....+++ +.. . ..+++..+++.++++++.+.|.+. |+.+..+. ...++++
T Consensus 220 ~~~~~~~~~~~~g~~~~~~~~~~a~~---~~~-~-~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 220 PRDDRRYFHKIAGSNMRLNEFSASVL---RAQ-L-ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp CTTCSSCCCCSCCCBCBCBHHHHHHH---HHH-H-TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred CccCccceeecccccCCcCHHHHHHH---HHH-H-HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEE
Confidence 01122 232222222 121 1 235667788888899999999885 88876421 1245677
Q ss_pred EEecCCC-CCHHHHHHHHhhcCeEEcCCCCCCCCCC------------------C------CCCEEEEccCCccccCC-C
Q 010008 400 VDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSA------------------L------VPGGIRIGSPAMTTRGF-S 453 (520)
Q Consensus 400 vd~~~~g-~~~~~~~~~L~~~gI~v~~~~~Pg~~~~------------------~------~~~giRig~~~~tt~g~-~ 453 (520)
+.+...+ .+.+++.+.|.+.||.++.++.|.+..+ + ..+.|||++... + +
T Consensus 295 ~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~----~~t 370 (388)
T 1b9h_A 295 FRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVL----LAG 370 (388)
T ss_dssp EECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGG----GSC
T ss_pred EEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCC----CCC
Confidence 7764311 2456688888889999976543321100 0 013589987643 4 5
Q ss_pred HHHHHHHHHHHHHHHH
Q 010008 454 EKEFVAIADFIHEGVE 469 (520)
Q Consensus 454 ~~d~~~la~~i~~~l~ 469 (520)
++|++++++.|+++++
T Consensus 371 ~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 371 EPELHATAEIIADAVA 386 (388)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999999999998775
No 87
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.93 E-value=4.1e-24 Score=219.11 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=219.3
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhcc--CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG- 168 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~--y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG- 168 (520)
+.|+|..++++ +++.|++++...+.+. ...+||... ..+++ +++++++|++++ +|.+++|
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-------~~~lr----~~la~~~g~~~~----~i~~t~g~ 91 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSAS-------SQKLR----EVAGELYGFDPS----WIIMANGS 91 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSS-------CHHHH----HHHHHHHTCCGG----GEEEESSH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCc-------hHHHH----HHHHHHhCcCcc----eEEEcCCH
Confidence 56888888874 5799999999887653 022454311 13444 678888998775 3444555
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008 169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 248 (520)
Q Consensus 169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~ 248 (520)
++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++. ++.+ ++++ +..++|++++
T Consensus 92 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~--~~l~---~~~~~~~v~i 155 (360)
T 3hdo_A 92 DEVLNNLIRAFAAEGEEIGYVHPSYSYYGT--------LAEVQGA--RVRTFGLTG-DFRI--AGFP---ERYEGKVFFL 155 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHHTC--EEEEECBCT-TSSB--TTCC---SSBCSSEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCChHHHHH--------HHHHCCC--EEEEeeCCC-CCCH--HHHH---hhcCCCEEEE
Confidence 499999999999999999999998765421 2333454 666777753 3444 4433 3336889999
Q ss_pred cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEeeC
Q 010008 249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK 319 (520)
Q Consensus 249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~~ 319 (520)
+.++||+ ..|.+++.++|+++|+++|+|++|.. +. +. .++. ..+++++|+||++ +|.|.|++++++
T Consensus 156 ~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~-~~--~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 230 (360)
T 3hdo_A 156 TTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAE-FA--ES--NALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP 230 (360)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG-GS--SC--CCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH
T ss_pred eCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh-hC--Cc--chhHHhccCCCEEEEecchHhhcCCccceeeEeeCH
Confidence 8888876 88999999999999999999999753 22 11 1111 2348889999996 678889999976
Q ss_pred CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008 320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL 399 (520)
Q Consensus 320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~ 399 (520)
++.+.+.....+ .+++....+++..+|+. ...+++..+++.++++.+.+.|.+.|+.+..+ ...+++
T Consensus 231 ------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~ 297 (360)
T 3hdo_A 231 ------EVIAALDKIRDH---YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIPS--QGNYLF 297 (360)
T ss_dssp ------HHHHHHHHHSCS---CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC--SSSEEE
T ss_pred ------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCC--CccEEE
Confidence 677776654332 23444455555556653 22357788889999999999999888887653 234566
Q ss_pred EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+.+. +.+..++.+.|.+.||.+... .. +..++++||++. +++|++++.+.++++.+
T Consensus 298 ~~~~--~~~~~~l~~~l~~~gi~v~~~----~~-~~~~~~iRis~~-------~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 298 ATPP--DRDGKRVYDGLYARKVLVRHF----SD-PLLAHGMRISIG-------TREEMEQTLAALKEIGE 353 (360)
T ss_dssp EECT--TCCHHHHHHHHHHTTEECBCC----CS-TTTTTSEEEECC-------CHHHHHHHHHHHHHHHC
T ss_pred EECC--CCCHHHHHHHHHHCCEEEEEC----CC-CCCCCEEEEEcC-------CHHHHHHHHHHHHHHhc
Confidence 6553 457788889999999999543 22 223578999964 47999999999887654
No 88
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.93 E-value=6.7e-24 Score=220.86 Aligned_cols=338 Identities=16% Similarity=0.042 Sum_probs=220.1
Q ss_pred ccceEecCCC----CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeec
Q 010008 94 KSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQP 165 (520)
Q Consensus 94 ~~i~Liasen----~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~ 165 (520)
+.|+|..+.. +.++.+.+++...+.+.. .. |+. .....++++...+++.+.+|+ +++ +|.+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~------~~~~~~l~~~la~~~~~~~g~~~~~~----~v~~ 103 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTP------ANGIPELREELAAFLKKYDHLEVSPE----NIVI 103 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCC------TTCCHHHHHHHHHHHHHHSCCCCCGG----GEEE
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCC------CCCCHHHHHHHHHHHHHhcCCCCCcc----eEEE
Confidence 5678865432 256889999888775421 01 221 122356666666677777794 443 4556
Q ss_pred CChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhh----h
Q 010008 166 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----L 240 (520)
Q Consensus 166 ~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~----~ 240 (520)
++|+ +|+.+++.++++|||+|++.+|.|.++. ..+...|. +++.+++++ ++ +|+++|+++++ +
T Consensus 104 t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~--------~~~~~~g~--~~~~v~~~~-~~-~d~~~l~~~l~~~~~~ 171 (407)
T 2zc0_A 104 TIGGTGALDLLGRVLIDPGDVVITENPSYINTL--------LAFEQLGA--KIEGVPVDN-DG-MRVDLLEEKIKELKAK 171 (407)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHTTTC--EEEEEEEET-TE-ECHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH--------HHHHHcCC--EEEEcccCC-CC-CCHHHHHHHHHhhhcc
Confidence 7775 9999999999999999999998775532 12334554 566666664 33 99999999987 4
Q ss_pred -cCCcEEE-EcCCCCCC--CCCHH---HHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCcccC
Q 010008 241 -FRPKLII-AGASAYPR--DFDYP---RMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSLR 308 (520)
Q Consensus 241 -~~pklIi-~~~s~~p~--~~d~~---~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l~ 308 (520)
.++++|+ +..++||+ ..+.+ +|.++|+++|++||+|++|..+ ...+....++. +.++++.|+||++.
T Consensus 172 ~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 250 (407)
T 2zc0_A 172 GQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFM-RYEGGDIVPLKALDNEGRVIVAGTLSKVLG 250 (407)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BSSCSSCCCGGGGCSSCCEEEEEESTTTTC
T ss_pred cCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCccc-ccCCCCCCChhhcCCCCCEEEEcccccccC
Confidence 2688874 56777775 66765 8999999999999999997643 33222111121 23478899999985
Q ss_pred -CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-C-chhHHHHHHHHHHHHHHHHHHHHC-
Q 010008 309 -GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-S-PEFKVYQNKVVSNCRALASRLVEL- 384 (520)
Q Consensus 309 -GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~-~~~~~~~~~i~~na~~l~~~L~~~- 384 (520)
|.|+|++++++ ++.+.+.....+...+++... .++...+++... . ...++..+++.++++.+.+.|.+.
T Consensus 251 ~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (407)
T 2zc0_A 251 TGFRIGWIIAEG------EILKKVLMQKQPIDFCAPAIS-QYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL 323 (407)
T ss_dssp TTSCCEEEECCH------HHHHHHHHHHTTTTSSSCHHH-HHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcceEEEecCH------HHHHHHHHHHHhhcCCCCHHH-HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56889999986 677666543333323333333 333333454320 1 223556677788889999999773
Q ss_pred -CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008 385 -GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD 462 (520)
Q Consensus 385 -G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~ 462 (520)
|+.++.+. ...++++++. .+++..++.+.|.+. ||.+..+...+. ....++++||++... +++|++++++
T Consensus 324 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~~~~-~~~~~~~iRis~~~~-----~~~~i~~~~~ 395 (407)
T 2zc0_A 324 PNAEFTKPI-AGMFVMFFLP-EGADGISFANELMEREGVVVVPGKPFYT-DESGKNAIRLNFSRP-----SKEEIPIGIK 395 (407)
T ss_dssp TTSCBCCCS-BSSEEEEECS-TTCCHHHHHHHHHHHTCEECBCSGGGCS-SSCCTTEEEEECSSS-----CTTHHHHHHH
T ss_pred CCCEEecCC-CcEEEEEEcC-CCCCHHHHHHHHHHhCCeEEECchhccC-CCCCCCeEEEEeCCC-----CHHHHHHHHH
Confidence 67665432 3456777774 356777777777666 999964321111 111357899987643 4799999999
Q ss_pred HHHHHHHH
Q 010008 463 FIHEGVEI 470 (520)
Q Consensus 463 ~i~~~l~~ 470 (520)
.|.++++.
T Consensus 396 ~l~~~l~~ 403 (407)
T 2zc0_A 396 KLAKLYKE 403 (407)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 89
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.93 E-value=2.5e-24 Score=223.10 Aligned_cols=353 Identities=14% Similarity=0.092 Sum_probs=230.3
Q ss_pred ccccChHHHHHHHHHHHHh-----hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008 74 LGEADPEVCEIITKEKERQ-----FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 146 (520)
Q Consensus 74 l~~~d~~~~~~~~~e~~~~-----~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~ 146 (520)
+..+.+..+..+.+...+. ++.|+|..+++. +++.|++++...+... .+|+.. .| ..++++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~---~g---~~~lr~~la~ 77 (396)
T 3jtx_A 6 LKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHEL--EKYPLT---AG---LPELRQACAN 77 (396)
T ss_dssp HHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGG--GSCCCT---TC---CHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhc--cCCCCC---CC---cHHHHHHHHH
Confidence 3444555444443333221 356888877753 6799999998877522 244431 12 2355666667
Q ss_pred HHHHHcCCC---CCCCceeeecCChH-HHHHHHHHhhCCCC-----CEEEEcCCCCCccccccccccccccccccceEEE
Q 010008 147 RALAAFNLD---ENKWGVNVQPLSGS-PANFEVYTAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 217 (520)
Q Consensus 147 ~~~~lfg~~---~~~~~~~V~~~sGs-~A~~~~l~all~pG-----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~ 217 (520)
++.+.+|.+ +++ +|.+++|+ +|+.+++.++++|| |+|++.+|.|.++.. .+...|. ++
T Consensus 78 ~l~~~~g~~~~~~~~---~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~--------~~~~~g~--~~ 144 (396)
T 3jtx_A 78 WLKRRYDGLTVDADN---EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG--------ATLLGGG--EI 144 (396)
T ss_dssp HHHHHTTTCCCCTTT---SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH--------HHHHTTC--EE
T ss_pred HHHHhcCCCCCCCCC---eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH--------HHHHcCC--EE
Confidence 888888964 541 23445655 89999999999997 799999987754321 2334455 56
Q ss_pred EEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC
Q 010008 218 MPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP 292 (520)
Q Consensus 218 v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p 292 (520)
+.++++.+++.+|++++++++++ ++++|+++.++||+ .++ +++|.++|+++|+++|+|++|. ++...+..+.+
T Consensus 145 ~~v~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~ 222 (396)
T 3jtx_A 145 HFANCPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYS-EIYFDGNKPLG 222 (396)
T ss_dssp EEEECCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTT-TCCSTTCCCCC
T ss_pred EEeecCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCch
Confidence 66666655567999999999988 89999998888886 555 5558899999999999999965 33433311111
Q ss_pred C----------CcccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcC
Q 010008 293 F----------KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360 (520)
Q Consensus 293 ~----------~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~ 360 (520)
+ ...++++.|+||++ +|.|.|++++++ ++.+.+....... ..+++....+++..+++. .
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~ 293 (396)
T 3jtx_A 223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDA------ELLKNFLLYRTYH-GSAMSIPVQRASIAAWDD--E 293 (396)
T ss_dssp HHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECH------HHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHC--C
T ss_pred HHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCH------HHHHHHHHHHhhc-ccCCCHHHHHHHHHHhCC--H
Confidence 0 23568899999964 688889999877 6666654422111 123344444444445653 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCC---CCCC
Q 010008 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK---SALV 436 (520)
Q Consensus 361 ~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~---~~~~ 436 (520)
...++..+++.++++.+.+.|.+. +.+..+ ..++++|+++.. .+..++.+.| +++||.+..+..++.. ....
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~ 369 (396)
T 3jtx_A 294 QHVIDNRRLYQEKFERVIPILQQV-FDVKLP-DASFYIWLKVPD--GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPG 369 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-SCCCCC-SSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCccCC-CeeEEEEEECCC--CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCC
Confidence 345777788888889999988764 333333 235667778753 4566666555 7789999654322210 1234
Q ss_pred CCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 437 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 437 ~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
.+++||++.. +++++++.++.|.+++
T Consensus 370 ~~~iRis~~~------~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 370 EGYVRIALVA------DVATCVKAAEDIVSLY 395 (396)
T ss_dssp TTEEEEECCS------CHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEcC------CHHHHHHHHHHHHHHh
Confidence 6799998652 5899999999887754
No 90
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=3e-24 Score=224.06 Aligned_cols=324 Identities=15% Similarity=0.135 Sum_probs=220.2
Q ss_pred cceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCC-CC-Cc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008 95 SLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKR-YY-GG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 170 (520)
Q Consensus 95 ~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~r-yy-~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~ 170 (520)
.+.|..++ .+.|+.|++++...+.+.| |++... +| .+ .+..+ .+++++++++|++++++ +.+.+|++
T Consensus 29 ~~yld~~~~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~l~~~la~~~g~~~~~v---~~~~g~t~ 99 (416)
T 1qz9_A 29 VIYLDGNSLGARPVAALARAQAVIAEEW--GNGLIRSWNSAGWRDLSE----RLGNRLATLIGARDGEV---VVTDTTSI 99 (416)
T ss_dssp CEECCTTTSCCCBTTHHHHHHHHHHTCC--CCCGGGHHHHTSGGGHHH----HHHHHHHTTTTCCTTSE---EECSCHHH
T ss_pred eEeecCCCcCCCcHHHHHHHHHHHHHHH--hccCccccchhhHHHHHH----HHHHHHHHHcCCCcccE---EEeCChhH
Confidence 45665444 3678899999998886544 222110 11 11 12223 34578999999986532 22344558
Q ss_pred HHHHHHHhhC------CCCCEEEEcC-CCCCccccccccccccccccc--cceEEEEEcccCCCCCCCCHHHHHHHhhhc
Q 010008 171 ANFEVYTAIL------KPHDRIMGLD-LPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILF 241 (520)
Q Consensus 171 A~~~~l~all------~pGD~Vl~~~-~~~~ghls~g~~~~~~~v~~~--g~~~~~v~~~~d~~~~~iD~d~le~~i~~~ 241 (520)
++.+++.+++ +|||+|++.+ +.|+++...... ..... |. +++.+++ +++|++++++
T Consensus 100 al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~----~~~~~~~g~--~~~~v~~--------~~~l~~~i~~- 164 (416)
T 1qz9_A 100 NLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG----LADMLQQGY--TLRLVDS--------PEELPQAIDQ- 164 (416)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH----HHHHHCSSC--EEEEESS--------GGGHHHHCST-
T ss_pred HHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHH----HHHHhcCCc--eEEEeCc--------HHHHHHHhCC-
Confidence 8877888776 8999755554 455433211000 00111 43 5555443 6888988887
Q ss_pred CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc-CCCCc-eEE
Q 010008 242 RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRG-GMI 315 (520)
Q Consensus 242 ~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l-~Gprg-G~I 315 (520)
++++|++++++||+ ..|+++|.++|+++|+++|+|++|..|.... ++. ++|++++|+||++ .|+++ |++
T Consensus 165 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~d~~~~s~~K~l~~g~~~~g~l 239 (416)
T 1qz9_A 165 DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPV-----DLHQAGADYAIGCTYKYLNGGPGSQAFV 239 (416)
T ss_dssp TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCC-----CHHHHTCSEEEECSSSTTCCCTTCCCEE
T ss_pred CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCC-----ChhhcCCCEEEecCcccCCCCCCCeEEE
Confidence 89999999888875 7899999999999999999999987654321 122 4799999999997 57888 999
Q ss_pred EeeCCCcchhhHHHhhcccCC----------------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008 316 FFKKDPVLGVELESAINNAVF----------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373 (520)
Q Consensus 316 ~~~~~~~~~~~l~~~i~~~~~----------------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n 373 (520)
++++ ++.+++..... ....++++...++++..+++.....++++..+++.++
T Consensus 240 ~~~~------~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (416)
T 1qz9_A 240 WVSP------QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLAL 313 (416)
T ss_dssp EECT------TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred EECH------HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9988 34443332110 0123567777887877788877655678888999999
Q ss_pred HHHHHHHHHHC----CCEEecCCC---CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008 374 CRALASRLVEL----GYKLVSGGS---DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA 446 (520)
Q Consensus 374 a~~l~~~L~~~----G~~v~~~gt---~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~ 446 (520)
++++.+.|.+. |++++.+.. ..+++++.+. +..++.+.|.+.||.+.. ..++.+||+++.
T Consensus 314 ~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~~~~---------~~~~~lRis~~~ 380 (416)
T 1qz9_A 314 TDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP----EGYAVIQALIDRGVIGDY---------REPRIMRFGFTP 380 (416)
T ss_dssp HHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT----THHHHHHHHHTTTEECEE---------ETTTEEEEECCT
T ss_pred HHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC----CHHHHHHHHHhCCcEecc---------CCCCeEEEeCcc
Confidence 99999999875 898876421 2455666653 367788888889998742 135789999763
Q ss_pred -ccccCCCHHHHHHHHHHHHHHHHH
Q 010008 447 -MTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 447 -~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
. .+++|++++++.|.++++.
T Consensus 381 ~~----~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 381 LY----TTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp TT----CCHHHHHHHHHHHHHHHHH
T ss_pred cC----CCHHHHHHHHHHHHHHHhc
Confidence 3 3489999999999998764
No 91
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.93 E-value=1.3e-24 Score=221.25 Aligned_cols=324 Identities=18% Similarity=0.188 Sum_probs=207.7
Q ss_pred cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008 95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 173 (520)
Q Consensus 95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~ 173 (520)
.|+|..+++ ++++.+++++...+... ..|+..+...+++ +++++++|.+. .+.+++|++|+.
T Consensus 5 ~i~~~~~~~~~p~~~~~~a~~~~~~~~--------~~y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~ 67 (347)
T 1jg8_A 5 MIDLRSDTVTKPTEEMRKAMAQAEVGD--------DVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQ 67 (347)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCCCC--------GGGTCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHH
T ss_pred EEEeccccCCCCCHHHHHHHhcCCCCC--------cccCCChHHHHHH----HHHHHHhCCce-----EEEecCcHHHHH
Confidence 467777665 46788999986543211 1122334455555 67888999863 355688999999
Q ss_pred HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEE
Q 010008 174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIA 248 (520)
Q Consensus 174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~ 248 (520)
+++.++++|||+|+++++.|.+.+..+ ......|. +++.+ .+ +++.+|+++|++++++. ++|+|++
T Consensus 68 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 138 (347)
T 1jg8_A 68 VSIMAHTQRGDEVILEADSHIFWYEVG-----AMAVLSGV--MPHPV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAI 138 (347)
T ss_dssp HHHHHHCCTTCEEEEETTCHHHHSSTT-----HHHHHTCC--EEEEE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCcchhhhcccc-----chhhccCe--EEEEe-cC-CCCccCHHHHHHHhccccccccCceEEEE
Confidence 999999999999999998765432111 01223454 55555 33 35678999999998752 6899999
Q ss_pred cCCCCCC---CCC---HHHHHHHHHHhCCEEEEechhhcccc-cccccCCCC-CcccEEEeccCcccCCCCceEEEeeCC
Q 010008 249 GASAYPR---DFD---YPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD 320 (520)
Q Consensus 249 ~~s~~p~---~~d---~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~ 320 (520)
++++||+ ..+ +++|.++|+++|++|++|++|..+.. ..+....++ .++|.+++|+||++.+|.||+++.++
T Consensus 139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~- 217 (347)
T 1jg8_A 139 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR- 217 (347)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH-
T ss_pred eccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH-
Confidence 8888764 444 57888999999999999999754321 112111111 15788888999999877666676665
Q ss_pred CcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008 321 PVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV 398 (520)
Q Consensus 321 ~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~ 398 (520)
++.+++... .+.+..........++ ..+++... .. .++..++++.+.+.|.+.|+.+.......+++
T Consensus 218 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~----~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 286 (347)
T 1jg8_A 218 -----DFIERARKARKMLGGGMRQAGVLAAAG-IIALTKMV-DR----LKEDHENARFLALKLKEIGYSVNPEDVKTNMV 286 (347)
T ss_dssp -----HHHHHHHHHHHHHTCCCSSTHHHHHHH-HHHHHHSS-TT----HHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEE
T ss_pred -----HHHHHHHHHHHHcCCchhHHHHHHHHH-HHHHHHHH-HH----HHHHHHHHHHHHHHHHhcCceeccCCCcceEE
Confidence 555544321 1111111111112222 22455432 12 23344677888888877677653211234567
Q ss_pred EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
++++...+.+..++.+.|.+.||.+.. + ..+.+|++.+.. .+++|++++++.|.++++
T Consensus 287 ~~~~~~~~~~~~~~~~~l~~~gi~v~~----~-----~~~~iRl~~~~~----~~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 287 ILRTDNLKVNAHGFIEALRNSGVLANA----V-----SDTEIRLVTHKD----VSRNDIEEALNIFEKLFR 344 (347)
T ss_dssp EEECTTSSSCHHHHHHHHHHHTEECEE----E-----ETTEEEEECCTT----SCHHHHHHHHHHHHHHHH
T ss_pred EEEcccccCCHHHHHHHHHHCCCEEec----C-----CCCeEEEEeCCC----CCHHHHHHHHHHHHHHHH
Confidence 777753356778888888889999852 2 246899987533 468999999999988765
No 92
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.93 E-value=8.2e-24 Score=224.12 Aligned_cols=340 Identities=13% Similarity=0.037 Sum_probs=221.8
Q ss_pred hccceEecCCC----CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeec
Q 010008 93 FKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQP 165 (520)
Q Consensus 93 ~~~i~Liasen----~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~ 165 (520)
.+.|+|..+.. +.++.+.+++...+.+.. ..+|+. .....++++...+++.+.+|+ +++ +|.+
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~----~v~~ 145 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGT------TKGFTPLRETLMKWLGKRYGISQDN----DIMI 145 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCC------TTCCHHHHHHHHHHHHHHHCCCTTS----EEEE
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCC------CCCcHHHHHHHHHHHHHhcCcCChh----hEEE
Confidence 45688865542 257889998887775421 123322 111245665555666667798 443 4556
Q ss_pred CChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhh----h
Q 010008 166 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----L 240 (520)
Q Consensus 166 ~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~----~ 240 (520)
++|+ +|+..++.++++|||+|++.+|.|.+... .+...|. +++.+++++ + .+|+++|+++++ +
T Consensus 146 t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-g~d~~~L~~~l~~~~~~ 213 (448)
T 3aow_A 146 TSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ--------AFNFYEP--QYIQIPLDD-E-GMKVEILEEKLKELKSQ 213 (448)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-T-EECHHHHHHHHHHHHHT
T ss_pred eCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHhhhhcc
Confidence 7766 99999999999999999999998765421 2333454 666666764 3 399999999987 3
Q ss_pred -cCCcEEE-EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C--cccEEEeccCccc-
Q 010008 241 -FRPKLII-AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL- 307 (520)
Q Consensus 241 -~~pklIi-~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~--~aDiv~~S~hK~l- 307 (520)
.+||+|+ +..++||+ ..+ +++|.++|+++|++||+|++|.. +.+.+....++ . +.++++.|++|++
T Consensus 214 ~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~-~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~ 292 (448)
T 3aow_A 214 GKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGE-LRYSGNPEKKIKALDNEGRVIYLGTFSKILA 292 (448)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTT-CBCSSCCCCCTGGGCTTSCEEEEEESTTTTC
T ss_pred CCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCcc-ccCCCCCCcCHHhcCCCCCEEEEccchhhcc
Confidence 3789874 56778876 454 56899999999999999999654 33333211122 1 3468899999998
Q ss_pred CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHHHC--
Q 010008 308 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVEL-- 384 (520)
Q Consensus 308 ~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l~~~L~~~-- 384 (520)
+|+|.||+++++ ++.+++.........+++.. ..+++..+|+... ....+...+.+.++++.+.+.|.+.
T Consensus 293 ~GlriG~v~~~~------~l~~~l~~~~~~~~~~~~~~-~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 365 (448)
T 3aow_A 293 PGFRIGWMVGDP------GIIRKMEIAKQSTDLCTNVF-GQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMP 365 (448)
T ss_dssp GGGCCEEEEECH------HHHHHHHHHHHHHHSSCCHH-HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccEEEEEeCH------HHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467789999987 67666544322212233333 3333344454310 1123555667778889999999874
Q ss_pred -CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008 385 -GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 463 (520)
Q Consensus 385 -G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~ 463 (520)
|+.+..+ ....++|+++. .+.+..++.+.|.+.||.+..+...+. ....++++||++... +++++++.++.
T Consensus 366 ~g~~~~~p-~~g~~~~v~~~-~~~~~~~l~~~l~~~gV~v~pg~~f~~-~~~~~~~iRls~~~~-----~~e~i~~~~~~ 437 (448)
T 3aow_A 366 EGVKWTKP-EGGMFIWVTLP-DGIDSKKMLERAIKKGVAYVPGEAFYA-HRDVKNTMRLNFTYV-----DEDKIMEGIKR 437 (448)
T ss_dssp TTCEECCC-SBSSEEEEECS-TTCCHHHHHHHHHHTTEECEEGGGGST-TCCCCSEEEEECSSS-----CTHHHHHHHHH
T ss_pred CCeEEeCC-CccEEEEEEcC-CCCCHHHHHHHHHHCCcEEEcchhhcC-CCCCCCEEEEEeCCC-----CHHHHHHHHHH
Confidence 7887654 23456788874 356777777777777999854321111 112357899997643 47999999999
Q ss_pred HHHHHHH
Q 010008 464 IHEGVEI 470 (520)
Q Consensus 464 i~~~l~~ 470 (520)
|.++++.
T Consensus 438 L~~~l~~ 444 (448)
T 3aow_A 438 LAETIKE 444 (448)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 93
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.93 E-value=5.8e-24 Score=220.93 Aligned_cols=336 Identities=13% Similarity=0.029 Sum_probs=219.5
Q ss_pred hccceEecCC-C---CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC
Q 010008 93 FKSLELIASE-N---FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL 166 (520)
Q Consensus 93 ~~~i~Liase-n---~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~ 166 (520)
...|+|..+. + +.++.+.+++...+.+.. ..+|+.. .| ..+++ +.+++++|++++ +|.++
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~---~~---~~~l~----~~la~~~g~~~~----~v~~~ 97 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPT---EG---YAPLR----AFVAEWIGVRPE----EVLIT 97 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCT---TC---CHHHH----HHHHHHHTSCGG----GEEEE
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCC---CC---CHHHH----HHHHHHhCCChh----hEEEe
Confidence 3567886543 2 257889999887775311 1233321 11 23444 567777787765 45567
Q ss_pred ChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcE
Q 010008 167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 245 (520)
Q Consensus 167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pkl 245 (520)
+|+ +|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ + .+|++++++++++.++++
T Consensus 98 ~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~-~-~~d~~~l~~~l~~~~~~~ 165 (397)
T 2zyj_A 98 TGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQ--------AFRLQGP--RFLTVPAGE-E-GPDLDALEEVLKRERPRF 165 (397)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-T-EECHHHHHHHHHHCCCSC
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEecCcCC-C-CCCHHHHHHHHhhcCCeE
Confidence 776 89999999999999999999988765421 2233454 566666663 3 399999999998657898
Q ss_pred EE-EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--ccc------EEEeccCcccC-CC
Q 010008 246 II-AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD------VVTTTTHKSLR-GP 310 (520)
Q Consensus 246 Ii-~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aD------iv~~S~hK~l~-Gp 310 (520)
|+ +..++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+..+.++. ..| +++.|+||++. |.
T Consensus 166 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~ 244 (397)
T 2zyj_A 166 LYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYREL-YFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL 244 (397)
T ss_dssp EEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTC-BCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG
T ss_pred EEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccc-cCCCCCCCchhhhCcccCCCeEEEEecccccccccc
Confidence 74 56777875 555 458999999999999999997643 33222111221 122 78899999985 56
Q ss_pred CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC---CCE
Q 010008 311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL---GYK 387 (520)
Q Consensus 311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~---G~~ 387 (520)
|.|++++++ ++.+.+.....+...+++... .++...+|+.......++..+++.++++.+.+.|.+. |+.
T Consensus 245 r~G~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~ 317 (397)
T 2zyj_A 245 RVAFAVAHP------EALQKLVQAKQGADLHTPMLN-QMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVR 317 (397)
T ss_dssp CCEEEECCH------HHHHHHHHHHHHHHSSCCHHH-HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSE
T ss_pred eeEEEecCH------HHHHHHHHHHHhhcCCCCHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 779999987 666665433222222333333 3333334442100224566777888899999999874 788
Q ss_pred EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 388 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 388 v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
+..+. ...++++++. .+.+..++.+.|.+.||.+..+...+. ....++++||++... +++|++++++.|.++
T Consensus 318 ~~~~~-~g~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~f~~-~~~~~~~iRis~~~~-----~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 318 YTRPK-GGMFVWMELP-KGLSAEGLFRRALEENVAFVPGGPFFA-NGGGENTLRLSYATL-----DREGIAEGVRRLGRA 389 (397)
T ss_dssp ECCCS-BSSEEEEECS-TTCCHHHHHHHHHHTTEEEEESGGGCT-TSCCTTEEEEECSSS-----CHHHHHHHHHHHHHH
T ss_pred EccCC-ccEEEEEEcC-CCCCHHHHHHHHHHCCCEEechHHhcC-CCCCCCeEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 76542 3456777774 356777888888888999964321111 112357899997643 489999999999988
Q ss_pred HHH
Q 010008 468 VEI 470 (520)
Q Consensus 468 l~~ 470 (520)
++.
T Consensus 390 l~~ 392 (397)
T 2zyj_A 390 LKG 392 (397)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 94
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=1.2e-24 Score=225.24 Aligned_cols=307 Identities=11% Similarity=0.092 Sum_probs=207.4
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 212 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g 212 (520)
+.++.+.++ .+++++++++|++ + ..+.+.||++|+.+++.. ++|||+|+++++.|.++. +. ......|
T Consensus 30 ~~~~~~~~~-~~~~~l~~~~~~~-~---~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~---~~---~~~~~~g 97 (379)
T 3ke3_A 30 SKAFQEVMN-DLLSNLKTVYNAE-A---AVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYR---WT---QILEKGK 97 (379)
T ss_dssp SHHHHHHHH-HHHHHHHHHHTCS-E---EEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHH---HH---HHHHHHC
T ss_pred CHHHHHHHH-HHHHHHHHHhCCC-C---EEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHH---HH---HHHHHhC
Confidence 455555544 5678999999997 2 234456888999987754 579999999987553321 10 0111223
Q ss_pred ceEEEEEcccCCC-------C-CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechh
Q 010008 213 IYFESMPYRLDES-------T-GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAH 279 (520)
Q Consensus 213 ~~~~~v~~~~d~~-------~-~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah 279 (520)
..++++.++++.. . +.+|+++++++++..++++|++...++++ ..| +++|+++|+++|+++++|++|
T Consensus 98 ~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~ 177 (379)
T 3ke3_A 98 FAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIA 177 (379)
T ss_dssp CSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 2234444444310 1 26899999999965589999887665544 778 999999999999999999998
Q ss_pred hcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccC---C---------------CC
Q 010008 280 ISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAV---F---------------PG 338 (520)
Q Consensus 280 ~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~---~---------------p~ 338 (520)
. |.. +..+. ++|++++|+||+|.||.| |++++++ ++.+++.... + .+
T Consensus 178 ~-g~~-----~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 245 (379)
T 3ke3_A 178 S-GCV-----WLDMKELGIDVLISAPQKGWSSTPCAGLVMLSA------AAIKKVESTESNCFSLDLKQWLTIMRAYENG 245 (379)
T ss_dssp C-TTC-----CCCHHHHTCSEEEECTTTTTCSCCCEEEEEECH------HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred c-CCc-----cccccccCCCEEEecchhhcCCCCceEEEEECH------HHHHhhhcCCCCceeecHHHHHHHHHhhhcc
Confidence 6 532 11122 689999999999988876 8888887 5544443210 0 01
Q ss_pred ---CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC-CCe-eEEEEecCCCCCHHHHH
Q 010008 339 ---LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS-DNH-LVLVDLRPMGIDGARVE 413 (520)
Q Consensus 339 ---~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt-~~~-~~~vd~~~~g~~~~~~~ 413 (520)
+.++++...++++..+++.+...++++..++..++++++.+.|.+.|++++.+.. ... +..+.. .+. .....
T Consensus 246 ~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~--~~~-~~~~~ 322 (379)
T 3ke3_A 246 GHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYT--ERD-DMHKG 322 (379)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEEC--SCH-HHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEcc--CCc-chHHH
Confidence 2357888899999889987765557888899999999999999999998865421 122 222222 111 11125
Q ss_pred HHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 414 KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 414 ~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+.|.+.||.+..+.-|....+...+.|||+++..++ ++|++++++.|+++++.
T Consensus 323 ~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t----~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 323 SAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDK----LTDIDGTVERFEKALDE 375 (379)
T ss_dssp HHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCC----HHHHHHHHHHHHHHHHH
Confidence 678889998854321111112336789999876654 79999999999988764
No 95
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.93 E-value=1.8e-24 Score=222.16 Aligned_cols=323 Identities=14% Similarity=0.082 Sum_probs=212.7
Q ss_pred CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-
Q 010008 101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 179 (520)
Q Consensus 101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al- 179 (520)
+..++++.|++++...+.+.+ .+| + +...+++ +.+++++|++. .+...+|++|+.+++.++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~--~~~------~-~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~~~~~~ 68 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ--LTQ------G-KRSLLFE----EALCEFLGVKH-----ALVFNSATSALLTLYRNFS 68 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC--CSS------S-HHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHcCc--ccC------C-hHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhc
Confidence 567889999999998886532 122 1 2334444 77889999872 244567779999999999
Q ss_pred --CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCC
Q 010008 180 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 257 (520)
Q Consensus 180 --l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~ 257 (520)
++|||+|+++++.|.+... .+...|. +++.++++++ +.+|++++++++++ ++++|++..+ .+...
T Consensus 69 ~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~~ 135 (375)
T 2fnu_A 69 EFSADRNEIITTPISFVATAN--------MLLESGY--TPVFAGIKND-GNIDELALEKLINE-RTKAIVSVDY-AGKSV 135 (375)
T ss_dssp CCCTTSCEEEECSSSCTHHHH--------HHHHTTC--EEEECCBCTT-SSBCGGGSGGGCCT-TEEEEEEECG-GGCCC
T ss_pred ccCCCCCEEEECCCccHhHHH--------HHHHCCC--EEEEeccCCC-CCCCHHHHHhhcCc-CceEEEEeCC-cCCcc
Confidence 8999999999998765432 2233454 7777778743 58999999999987 8898877766 55588
Q ss_pred CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEec--cCcccCCCCceEEEe-eCCCcchhhHHHhhcc
Q 010008 258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT--THKSLRGPRGGMIFF-KKDPVLGVELESAINN 333 (520)
Q Consensus 258 d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S--~hK~l~GprgG~I~~-~~~~~~~~~l~~~i~~ 333 (520)
|+++|.++|+++|+++|+|++|..|....+. .+. ..|+++.| .||++ |+..|++++ +++ ++.+++..
T Consensus 136 ~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~i~~~s~s~~K~~-~~g~g~~~~~~~~-----~~~~~~~~ 206 (375)
T 2fnu_A 136 EVESVQKLCKKHSLSFLSDSSHALGSEYQNK---KVGGFALASVFSFHAIKPI-TTAEGGAVVTNDS-----ELHEKMKL 206 (375)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSS-CCSSCEEEEESCH-----HHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEEECccccCCeECCe---eccccCCeEEEeCCCCCCc-cccCceEEEeCCH-----HHHHHHHH
Confidence 9999999999999999999999877543221 121 23565555 55998 453366666 432 45554433
Q ss_pred cCCCCC------------CCCC-hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC--C--CCC
Q 010008 334 AVFPGL------------QGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--G--SDN 395 (520)
Q Consensus 334 ~~~p~~------------~g~p-~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~--g--t~~ 395 (520)
....+. .+.+ ....+++ ++++.. ...+++..++..++++++.+.|.+. |+++..+ + ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 283 (375)
T 2fnu_A 207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQS-ALGLSQ--LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSN 283 (375)
T ss_dssp HTBTTEEESSSSCEEESSCCCBCCCCHHHH-HHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCC
T ss_pred HHhcCCccccccccccccccccCCCCHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcce
Confidence 221110 1110 1112211 112222 1355777888899999999999884 7877653 1 123
Q ss_pred eeEEEEecCCCC-CHHHHHHHHhhcCeEEcCCCCCCCC-CCC---------------CCCEEEEccCCccccCCCHHHHH
Q 010008 396 HLVLVDLRPMGI-DGARVEKILDMASITLNKNSVPGDK-SAL---------------VPGGIRIGSPAMTTRGFSEKEFV 458 (520)
Q Consensus 396 ~~~~vd~~~~g~-~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~---------------~~~giRig~~~~tt~g~~~~d~~ 458 (520)
+++++.+...++ +..++.+.|.+.||.++..+.|++. ..+ ..+.|||+++.. .+++|++
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~----~t~~~i~ 359 (375)
T 2fnu_A 284 HLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHAN----LNLESVQ 359 (375)
T ss_dssp SCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTT----CCHHHHH
T ss_pred EEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCC----CCHHHHH
Confidence 445666653334 5677888899999999743333321 000 125799997654 3589999
Q ss_pred HHHHHHHHHHHH
Q 010008 459 AIADFIHEGVEI 470 (520)
Q Consensus 459 ~la~~i~~~l~~ 470 (520)
++++.|+++++.
T Consensus 360 ~~~~~l~~~~~~ 371 (375)
T 2fnu_A 360 NIAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 96
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.92 E-value=3.9e-24 Score=221.41 Aligned_cols=330 Identities=14% Similarity=0.126 Sum_probs=219.5
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 174 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~ 174 (520)
.|+|.. ...++.+++++...+.+.+ |+. .+..++++ +.+++++|.+. .+.+.+|++|+.+
T Consensus 10 ~i~~~~--p~~~~~~~~a~~~~~~~~~--------~~~-~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~al~~ 69 (393)
T 1mdo_A 10 FLPFSR--PAMGAEELAAVKTVLDSGW--------ITT-GPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMHI 69 (393)
T ss_dssp CBCSCC--CCCCHHHHHHHHHHHHHTC--------CSS-SHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHH
T ss_pred ccccCC--CCCCHHHHHHHHHHHhcCC--------cCC-ChHHHHHH----HHHHHHhCCCc-----EEEecChHHHHHH
Confidence 455543 4467889999988876532 111 23344554 67888999862 3555778899999
Q ss_pred HHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008 175 VYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253 (520)
Q Consensus 175 ~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 253 (520)
++.++ ++|||+|+++++.|.+... .+...|. +++.++++++++.+|++++++++++ ++++|+++.+ .
T Consensus 70 ~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~-~ 137 (393)
T 1mdo_A 70 ALMALGIGEGDEVITPSMTWVSTLN--------MIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVHY-A 137 (393)
T ss_dssp HHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBCG-G
T ss_pred HHHHcCCCCCCEEEeCCCccHhHHH--------HHHHCCC--EEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeCC-C
Confidence 99999 9999999999998765421 2334555 6777777765678999999999987 8999887642 3
Q ss_pred CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhh
Q 010008 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAI 331 (520)
Q Consensus 254 p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i 331 (520)
+...|+++|.++|+++|+++|+|++|..|....+. +... .|++++|+| |+++|+++|+++++++ ++.+++
T Consensus 138 G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~~~--~d~~~~S~~k~K~l~~~~~g~~~~~~~-----~~~~~l 209 (393)
T 1mdo_A 138 GAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR-HIGA--RGTAIFSFHAIKNITCAEGGIVVTDNP-----QFADKL 209 (393)
T ss_dssp GCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE-ETTS--SSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCeEEEECccccCCeECCe-ecCC--CCeEEEeCCCCCccccccceEEEeCCH-----HHHHHH
Confidence 34779999999999999999999998877654331 1111 799999999 9998889999999742 455444
Q ss_pred cccCCCC--------------------CCCC-ChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008 332 NNAVFPG--------------------LQGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS 390 (520)
Q Consensus 332 ~~~~~p~--------------------~~g~-p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~ 390 (520)
......+ ..|. ..+..+++ ++++..+ ..+++..++..++++.+.+.|.+.++++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 286 (393)
T 1mdo_A 210 RSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNA-AIALAQL--QKLDALNARRAAIAAQYHQAMADLPFQPLS 286 (393)
T ss_dssp HHHTBTTEECC-----------CCEESSCCCBCCCCHHHH-HHHHHHH--HTHHHHHHHHHHHHHHHHHHHHTSSCEECC
T ss_pred HHHHhcCCcccchhhhcccccccccccccCccCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 3211110 0111 01111211 1122222 234566777778889999999887777653
Q ss_pred CC-----CCCeeEEEEecC--CCCCHHHHHHHHhhcCeEEcCCCCCCC----------CCCC------CCCEEEEccCCc
Q 010008 391 GG-----SDNHLVLVDLRP--MGIDGARVEKILDMASITLNKNSVPGD----------KSAL------VPGGIRIGSPAM 447 (520)
Q Consensus 391 ~g-----t~~~~~~vd~~~--~g~~~~~~~~~L~~~gI~v~~~~~Pg~----------~~~~------~~~giRig~~~~ 447 (520)
.. ...+++++.+.. .+.+..++.+.|.+.||.++....|.. .+.. ....+|+++...
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~ 366 (393)
T 1mdo_A 287 LPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPD 366 (393)
T ss_dssp CCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTT
T ss_pred CCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCC
Confidence 11 223456776642 045778888999999999976543310 0000 134799987643
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHH
Q 010008 448 TTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 448 tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
++++|++++++.|+++++..
T Consensus 367 ----~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 367 ----MTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp ----CCHHHHHHHHHHHHHHHC--
T ss_pred ----CCHHHHHHHHHHHHHHHhcC
Confidence 45899999999999887643
No 97
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.92 E-value=4.2e-24 Score=225.70 Aligned_cols=340 Identities=14% Similarity=0.112 Sum_probs=210.8
Q ss_pred ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc--CCCCCCCceeeecCChH
Q 010008 94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf--g~~~~~~~~~V~~~sGs 169 (520)
+.|+|..+++ .+++.|++++...+.+.... ++...|+......++++...+++. + +++++ +|.+++|+
T Consensus 70 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~----~i~~t~G~ 141 (449)
T 3qgu_A 70 KIISLGIGDTTEPLPKYIADAMAKAAAGLATR--EGYSGYGAEQGQGALREAVASTFY--GHAGRAAD----EIFISDGS 141 (449)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHGGGGS--CCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGG----GEEEESCH
T ss_pred CEEEeeCCCCCCCCCHHHHHHHHHHHHhhccc--cCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHH----HEEEccCH
Confidence 4688887775 36899999998887642210 111113222223455544334333 3 44554 45567777
Q ss_pred -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccce--------EEEEEcccCCC-CCCCCHHHHHHHhh
Q 010008 170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY--------FESMPYRLDES-TGLVDYDMLEKTAI 239 (520)
Q Consensus 170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~--------~~~v~~~~d~~-~~~iD~d~le~~i~ 239 (520)
+++..+ .++++|||+|++.+|.|.++.. .+...|.. ++++.++++.+ ....|++++
T Consensus 142 ~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 207 (449)
T 3qgu_A 142 KCDIARI-QMMFGSKPTVAVQDPSYPVYVD--------TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA----- 207 (449)
T ss_dssp HHHHHHH-HHHHCSSSCEEEEESCCTHHHH--------HHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----
T ss_pred HHHHHHH-HHHhCCCCEEEEcCCCChhHHH--------HHHHcCCcccccccccceeEEEecccccCCcCChhHc-----
Confidence 777766 8899999999999998876532 12223321 12555556543 345565432
Q ss_pred hcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC------CcccEEEeccCccc-
Q 010008 240 LFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTTTHKSL- 307 (520)
Q Consensus 240 ~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~------~~aDiv~~S~hK~l- 307 (520)
+ ++++|+++.++||+ ..+ +++|+++|+++|++||+|++|. ++...+..+.++ ...++++.|+||++
T Consensus 208 ~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 285 (449)
T 3qgu_A 208 K-RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYA-LYISNPDCPKTIYEIPGADEVAIETCSFSKYAG 285 (449)
T ss_dssp C-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGT
T ss_pred C-CCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchH-hhhcCCCCCCCHhhccCCCCcEEEEecchhhcC
Confidence 3 78999999899987 444 7888899999999999999965 444433222122 13468899999997
Q ss_pred -CCCCceEEEeeCCCcch--hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC
Q 010008 308 -RGPRGGMIFFKKDPVLG--VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL 384 (520)
Q Consensus 308 -~GprgG~I~~~~~~~~~--~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~ 384 (520)
+|+|.|+++++++.... ..+...+.........+.+.. ..++...+++.......++..+++.++++.+.+.|.+.
T Consensus 286 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 286 FTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNI-VQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp CTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHH-HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 58899999998842100 000011211111112233333 33333334433111345677888999999999999998
Q ss_pred CCEEecCCCCCeeEEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008 385 GYKLVSGGSDNHLVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 463 (520)
Q Consensus 385 G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~ 463 (520)
|+++..+ ...+++|+++. +.+..++.+ +++++||.+..+..+ ++..+++|||+.. .++++++++++.
T Consensus 365 g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~~gI~v~pg~~f---~~~~~~~iRis~~------~~~e~i~~~l~~ 432 (449)
T 3qgu_A 365 GFSVYGG-DDAPYIWVGFP--GKPSWDVFAEILERCNIVTTPGSGY---GPAGEGFVRASAF------GSRENILEAVRR 432 (449)
T ss_dssp TCCEEES-SSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGG---CGGGTTEEEEECC------SCHHHHHHHHHH
T ss_pred CCeeeCC-CCeeEEEEECC--CCCHHHHHHHHHHHCCEEEecchHh---CCCCCCeEEEEec------CCHHHHHHHHHH
Confidence 9988754 23567788875 567766654 455679998543222 2234689999842 258999999999
Q ss_pred HHHHHHH
Q 010008 464 IHEGVEI 470 (520)
Q Consensus 464 i~~~l~~ 470 (520)
|.++++.
T Consensus 433 l~~~~~~ 439 (449)
T 3qgu_A 433 FKEAYGK 439 (449)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9888753
No 98
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.92 E-value=6.5e-24 Score=222.32 Aligned_cols=330 Identities=16% Similarity=0.139 Sum_probs=216.1
Q ss_pred CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CC
Q 010008 103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LK 181 (520)
Q Consensus 103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~ 181 (520)
.++++.+++++...+.+.....|+. .++..+..++++ +++++++|++. .|.++||++|+..++.++ ++
T Consensus 12 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~g~~~l~~~l~----~~la~~~g~~~-----~i~~~~gt~al~~~~~~~~~~ 80 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSNRWAISGY--WTGEESMERKFA----KAFADFNGVPY-----CVPTTSGSTALMLALEALGIG 80 (418)
T ss_dssp SCCCHHHHHHHHHHHHHTCCSTTSB--CCSSCCHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHhcCCccccCc--ccCCHHHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCCC
Confidence 4568999999988886532111321 122223344444 78889999873 466789999999999999 89
Q ss_pred CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHH
Q 010008 182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR 261 (520)
Q Consensus 182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~ 261 (520)
|||+|+++++.|.+... .+...|. +++.++++++++.+|++++++++++ ++++|+++++ .+...|+++
T Consensus 81 ~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-~G~~~~~~~ 148 (418)
T 2c81_A 81 EGDEVIVPSLTWIATAT--------AVLNVNA--LPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVHL-FGSMANMDE 148 (418)
T ss_dssp TTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBCC-TTCCCCHHH
T ss_pred CcCEEEECCCccHhHHH--------HHHHcCC--EEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeCC-cCCcccHHH
Confidence 99999999998765431 2334454 6777777755789999999999987 8899887643 344789999
Q ss_pred HHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEecc--CcccCCCCceEEEeeCCCcchhhHHHhhcccCCC--
Q 010008 262 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELESAINNAVFP-- 337 (520)
Q Consensus 262 i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~--hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p-- 337 (520)
|.++|+++|++||+|++|..+....+..... ..|++++|+ ||+++++++|+++++++ ++.+++......
T Consensus 149 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~~s~s~~K~~~~g~~g~~~~~~~-----~l~~~~~~~~~~~~ 221 (418)
T 2c81_A 149 INEIAQEHNLFVIEDCAQSHGSVWNNQRAGT--IGDIGAFSCQQGKVLTAGEGGIIVTKNP-----RLFELIQQLRADSR 221 (418)
T ss_dssp HHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHHHHBTTE
T ss_pred HHHHHHHCCCEEEEECcccccCccCCEeccc--ccceEEEeccCCcccCCCCeEEEEECCH-----HHHHHHHHHHHhCc
Confidence 9999999999999999988775332211111 246666666 99986568899999643 444443321111
Q ss_pred --------------------CCCCCC--hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCC
Q 010008 338 --------------------GLQGGP--HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD 394 (520)
Q Consensus 338 --------------------~~~g~p--~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~ 394 (520)
...|-. .....+++. +... ..+++..++..++++++.+.|.+. |+++......
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 297 (418)
T 2c81_A 222 VYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL--LDQL--QELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQ 297 (418)
T ss_dssp EECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH--HHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTT
T ss_pred cccccccccccchhhccccccccCcCCCcCHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 000100 001112221 1221 245667788888899999999875 8887632111
Q ss_pred ----C-eeEEEEecC---CCCCHHHHHHHHhhc-CeE---EcCCCCCCCC-CCC-----------------------C--
Q 010008 395 ----N-HLVLVDLRP---MGIDGARVEKILDMA-SIT---LNKNSVPGDK-SAL-----------------------V-- 436 (520)
Q Consensus 395 ----~-~~~~vd~~~---~g~~~~~~~~~L~~~-gI~---v~~~~~Pg~~-~~~-----------------------~-- 436 (520)
. +++.+.+.. .+++..++.+.|.+. ||. ++..+.|.+. ..+ .
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (418)
T 2c81_A 298 VSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPV 377 (418)
T ss_dssp EEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHH
T ss_pred CcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChH
Confidence 2 233355542 256788888888887 999 8766544221 000 0
Q ss_pred -----CCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 437 -----PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 437 -----~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.+.|||+++..+ -+++|++++++.|+++++
T Consensus 378 ~~~~~~~~lrl~~~~~~---gt~edi~~~~~~l~~~~~ 412 (418)
T 2c81_A 378 SERASGQSIVIHHAILL---AEPSHLSLLVDAVAELAR 412 (418)
T ss_dssp HHHHHHHEEEEEGGGGG---SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCEEEecCCccC---CCHHHHHHHHHHHHHHHH
Confidence 157999987544 048999999999998875
No 99
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.92 E-value=2.1e-24 Score=226.67 Aligned_cols=306 Identities=15% Similarity=0.113 Sum_probs=207.6
Q ss_pred cChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhh--ccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHc
Q 010008 77 ADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLT--NKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAF 152 (520)
Q Consensus 77 ~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~--~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf 152 (520)
...++++.+.++..++...|+.++++|. +.|++|+..... ..+ +.||.. +....+++| +++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~~~gy~y-----~~~~~~~Le----~~lA~l~ 86 (427)
T 3i16_A 18 RVLKLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTNSSGYGY-----GDIGRDSLD----AVYARVF 86 (427)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCT-----TCHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCCCCCCCC-----CHHHHHHHH----HHHHHHh
Confidence 3445677778888888888999999987 779999976421 111 233332 223356666 6789999
Q ss_pred CCCCCCCceeee--cCChHHHHHHHHHhhCCCCCEEEEcC-CCCCcccccc-cccc--ccccccccceEEEEEcccCCCC
Q 010008 153 NLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHG-FMTP--KRRVSGTSIYFESMPYRLDEST 226 (520)
Q Consensus 153 g~~~~~~~~~V~--~~sGs~A~~~~l~all~pGD~Vl~~~-~~~~ghls~g-~~~~--~~~v~~~g~~~~~v~~~~d~~~ 226 (520)
|++.+ .|+ ++||++||.+++.++++|||+|++.+ +.|+++.... .... ...+...|. +++.++++ ++
T Consensus 87 g~e~a----lv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~~-~~ 159 (427)
T 3i16_A 87 NTESA----LVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGI--NYKQVDLK-ED 159 (427)
T ss_dssp TCSEE----EEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTC--EEEECCCC-TT
T ss_pred CCcce----EEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCC--EEEEecCc-cC
Confidence 99863 443 68999999999999999999999998 8776653100 0000 001223354 66777776 45
Q ss_pred CCCCHHHHHHHhhh-cCCcEEEEcC----CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC-cc
Q 010008 227 GLVDYDMLEKTAIL-FRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YC 296 (520)
Q Consensus 227 ~~iD~d~le~~i~~-~~pklIi~~~----s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~-~a 296 (520)
+.+|++++++++++ .+||+|+++. ++||+ ..|+++|+++|++ +|+++++|++|..+... ..|+. ++
T Consensus 160 g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~----~~p~~~ga 235 (427)
T 3i16_A 160 GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDT----KEPTDVGA 235 (427)
T ss_dssp SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSS----SCGGGGTC
T ss_pred CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccccc----CCccccCC
Confidence 78999999999983 2899999987 77775 5799999999999 99999999998755421 23444 68
Q ss_pred cEEEeccCcccCC---CCceEEEeeCCCcchhhHHHhhcccC-CCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010008 297 DVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNAV-FPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 370 (520)
Q Consensus 297 Div~~S~hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~~-~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i 370 (520)
|++++|+||+++| ++||+|++++ ++.+++.... .+++ ..+|.... + ..+++.+. ....+.++.
T Consensus 236 Div~~S~sK~lgg~g~~~gG~i~~~~------~li~~l~~~~~~~~~g~~~~~~~~~-a--~~~l~gl~--~~~~r~~~~ 304 (427)
T 3i16_A 236 DLIAGSLIKNIGGGIAPTGGYLAGTK------DCIEKTSYRLTVPGIGGECGSTFGV-V--RSMYQGLF--LAPHISMEA 304 (427)
T ss_dssp SEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTC-H--HHHHHHHH--HHHHHHHHH
T ss_pred eEEEecCcccCCCCCCceEEEEEECH------HHHHHHHHhcccCccCccCCccHHH-H--HHHHHHHH--HHHHHHHHH
Confidence 9999999999987 8899999987 7777765422 2222 11221110 1 11122111 124678899
Q ss_pred HHHHHHHHHHHHHCCCEEecCCCCCe-----eEEEEecCCCCCHHH---HHHHHhhcCe
Q 010008 371 VSNCRALASRLVELGYKLVSGGSDNH-----LVLVDLRPMGIDGAR---VEKILDMASI 421 (520)
Q Consensus 371 ~~na~~l~~~L~~~G~~v~~~gt~~~-----~~~vd~~~~g~~~~~---~~~~L~~~gI 421 (520)
.+|+..+++.|++.|+++..+ .+| ++.+.+. +.+. +.+.|.....
T Consensus 305 ~~~a~~la~~L~~~g~~V~p~--~~~~~~~~i~~i~l~----~~~~~~~f~~~l~~~~~ 357 (427)
T 3i16_A 305 LKGAILCSRIMELAGFEVMPK--YDEKRSDIIQSIKFN----DKDKLIEFCKGIQTGSP 357 (427)
T ss_dssp HHHHHHHHHHHHHTTCEEESC--TTSCCSSSCEEEECS----SHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCCCeecCC--CCCCCccEEEEEEEC----CHHHHHHHHHHHhhcCc
Confidence 999999999999999988543 334 5555553 3333 4455555543
No 100
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.92 E-value=3.3e-24 Score=224.25 Aligned_cols=349 Identities=12% Similarity=0.143 Sum_probs=220.4
Q ss_pred cccChHHHHHHHHHHHHhh-----ccceEecCC------C-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHH
Q 010008 75 GEADPEVCEIITKEKERQF-----KSLELIASE------N-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET 142 (520)
Q Consensus 75 ~~~d~~~~~~~~~e~~~~~-----~~i~Liase------n-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~ 142 (520)
...++.++.+..+..+... +.|+|..++ + ++++.|.+++....... ..+|+. ..| ..++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~---~~g---~~~lr~ 87 (418)
T 3rq1_A 15 KKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAP---IAG---IPDFLC 87 (418)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCC---TTC---CHHHHH
T ss_pred CCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCC---CCC---hHHHHH
Confidence 3444556666654433322 568887763 2 47889999987654321 123332 112 234454
Q ss_pred HHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc
Q 010008 143 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 221 (520)
Q Consensus 143 ~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~ 221 (520)
...+++....+.+.. .+|.+++|+ +|+..++.++++|||+|++++|.|.++.. .+...|. +++.++
T Consensus 88 ~ia~~~~~~~~~~~~---~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~ 154 (418)
T 3rq1_A 88 AAEKECFGNFRPEGH---IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV--------ICSDTGR--TLVTYS 154 (418)
T ss_dssp HHHHHHHGGGCCSSE---EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEEC
T ss_pred HHHHHHhcccCcccc---ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHH--------HHHHcCC--EEEEEe
Confidence 444555555554421 245567766 99999999999999999999998765431 2334555 677777
Q ss_pred cCCCCCCCCHHHHHHHhhhc---CCc-EEEEcCC-CCCC--CCCHHH---HHHHHH------HhCCEEEEechhhccccc
Q 010008 222 LDESTGLVDYDMLEKTAILF---RPK-LIIAGAS-AYPR--DFDYPR---MRQIAD------AVGALLMMDMAHISGLVA 285 (520)
Q Consensus 222 ~d~~~~~iD~d~le~~i~~~---~pk-lIi~~~s-~~p~--~~d~~~---i~~ia~------~~g~~li~D~Ah~~gli~ 285 (520)
++++++.+|++++++.+++. +++ ++++++| +||+ ..+.++ |+++|+ ++|+++|+|++| .++..
T Consensus 155 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y-~~~~~ 233 (418)
T 3rq1_A 155 LFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAY-LDYSG 233 (418)
T ss_dssp SBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTT-GGGSS
T ss_pred eeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccc-ccccC
Confidence 76556789999999998753 666 7888878 8886 666554 555555 889999999996 45544
Q ss_pred ccccCCCC----C--ccc---EEEeccCccc--CCCCceEEEe---eCCCcchhhHHHhhcccCCC---CCCCCChHHHH
Q 010008 286 ASVVADPF----K--YCD---VVTTTTHKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTI 348 (520)
Q Consensus 286 ~~~~~~p~----~--~aD---iv~~S~hK~l--~GprgG~I~~---~~~~~~~~~l~~~i~~~~~p---~~~g~p~~~~i 348 (520)
.+....++ . ..| ++++|+||++ +|+|.|++++ ++ ++.+.+...... +...+++....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (418)
T 3rq1_A 234 EKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDE------EIADEFFEVNKSTSRATWSNICRPAM 307 (418)
T ss_dssp CHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSH------HHHHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred ChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCH------HHHHHHHHHHHHHHhhccCCCchHHH
Confidence 32111011 1 123 7789999986 6889999998 55 566555432100 00122233333
Q ss_pred HHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEE
Q 010008 349 GGLAVCLKHAQ-----SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423 (520)
Q Consensus 349 aala~al~~~~-----~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v 423 (520)
+++..+++... ..+.+.+.+++.++++.+.+.|.+.|+++..+. .+.++|+++. +..++.+.|.++||.+
T Consensus 308 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~~gi~v 382 (418)
T 3rq1_A 308 RTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYR-GGFFITIPTD----SANAICEELKKEHIYV 382 (418)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC-SSSEEEEECT----THHHHHHHHHHTTEEC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-ceEEEEcCCC----CHHHHHHHHHhCCEEE
Confidence 33333332110 011234556778888889999988888876542 3455566653 5677888899999998
Q ss_pred cCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 424 ~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
. || ++++||++.. .++++++++++.|.++++.
T Consensus 383 ~----~g------~~~iRis~~~-----~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 383 I----AL------ANGIRIAACG-----IPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp E----EC------SSEEEEEGGG-----SCHHHHTTHHHHHHHHHHH
T ss_pred e----cC------CCCeEEEEec-----CCHHHHHHHHHHHHHHHHH
Confidence 3 43 4689998542 4589999999999988764
No 101
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.92 E-value=5.9e-25 Score=226.08 Aligned_cols=326 Identities=12% Similarity=0.091 Sum_probs=216.1
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 174 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~ 174 (520)
.+++..+.+..++ +++++...+.... |+ ..+...+++ +.+++++|.+. .+.+++|++|+.+
T Consensus 8 ~~~l~~~~~~~~~-~~~~~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~ 68 (374)
T 3uwc_A 8 YSYLERQFADIEP-YLNDLREFIKTAD--------FT-LGAELEKFE----KRFAALHNAPH-----AIGVGTGTDALAM 68 (374)
T ss_dssp SCCHHHHTSSCHH-HHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHH
T ss_pred eeccccCCCCchH-HHHHHHHHHHcCC--------cc-cChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHH
Confidence 4556566667777 9999887775431 22 234445555 67889999873 3566889999999
Q ss_pred HHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008 175 VYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253 (520)
Q Consensus 175 ~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 253 (520)
++.++ ++|||+|+++++.|.++.. .+...|. +++.++++ +++.+|++++++++++ ++++|+ ++|
T Consensus 69 ~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~---~~n 133 (374)
T 3uwc_A 69 SFKMLNIGAGDEVITCANTFIASVG--------AIVQAGA--TPVLVDSE-NGYVIDPEKIEAAITD-KTKAIM---PVH 133 (374)
T ss_dssp HHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBC-TTSSBCGGGTGGGCCT-TEEEEC---CBC
T ss_pred HHHHcCCCCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecC-CCCCcCHHHHHHhCCC-CceEEE---EeC
Confidence 99999 9999999999998765431 2334454 66777776 5788999999999987 888887 444
Q ss_pred CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCC-CCceEEEeeCCCcchhhHH
Q 010008 254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELE 328 (520)
Q Consensus 254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~G-prgG~I~~~~~~~~~~~l~ 328 (520)
|+ ..|+++|.++|+++|+++|+|++|..|....+.... ..+|++++|+| |++++ +.+|+++++++ ++.
T Consensus 134 ~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~--~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~-----~~~ 206 (374)
T 3uwc_A 134 YTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVG--SWGQFACFSLHPLKNLNVWSDAGVIITHSD-----EYA 206 (374)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSSSSSSCCSSCCEEEEESCH-----HHH
T ss_pred CcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeecc--ccccEEEEeCCCCCcCCccceeEEEEeCCH-----HHH
Confidence 43 789999999999999999999999877553322111 13699999988 99977 56899998774 454
Q ss_pred HhhcccCCCCC-------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEecCCC---CC-
Q 010008 329 SAINNAVFPGL-------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGS---DN- 395 (520)
Q Consensus 329 ~~i~~~~~p~~-------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~~gt---~~- 395 (520)
+++......+. ..+.+. .+.++..++.......++++.++..++++.+.+.|.+.+ +.+..... ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 285 (374)
T 3uwc_A 207 EKLRLYRNHGLINRDVCVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVF 285 (374)
T ss_dssp HHHHHHTBTTEEETTEESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCC
T ss_pred HHHHHHHhcCccccCccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceee
Confidence 44432211100 011110 111222222222234567778888888999999998754 66543211 11
Q ss_pred eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC-CCCCCC-CC----------------CCCEEEEccCCccccCCCHHHH
Q 010008 396 HLVLVDLRPMGIDGARVEKILDMASITLNKNS-VPGDKS-AL----------------VPGGIRIGSPAMTTRGFSEKEF 457 (520)
Q Consensus 396 ~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~-~Pg~~~-~~----------------~~~giRig~~~~tt~g~~~~d~ 457 (520)
+.+.+.. .+...+.+.|.+.||.+...+ .|.... .+ ..+.+|++++..+ +++|+
T Consensus 286 ~~~~~~~----~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~----t~edi 357 (374)
T 3uwc_A 286 HIYVLRV----KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYL----TEEEI 357 (374)
T ss_dssp SSEEEEE----TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTS----CHHHH
T ss_pred EEEEEEc----CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCC----CHHHH
Confidence 1222222 156788899999999987653 111110 00 0167999877544 58999
Q ss_pred HHHHHHHHHHHHH
Q 010008 458 VAIADFIHEGVEI 470 (520)
Q Consensus 458 ~~la~~i~~~l~~ 470 (520)
+++++.|+++++.
T Consensus 358 ~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 358 NYIIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998763
No 102
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.92 E-value=2.8e-24 Score=223.82 Aligned_cols=328 Identities=19% Similarity=0.169 Sum_probs=215.9
Q ss_pred ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008 94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 173 (520)
Q Consensus 94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~ 173 (520)
..|+|..+++..++.|++++...+.+. +|+.+ +..++++ +.+++++|.+. .|.+++|++|+.
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~--------~y~~~-~~~~~l~----~~la~~~~~~~-----~v~~~~Gt~a~~ 92 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG--------RYLLG-PELEGFE----AEFAAYCETDH-----AVGVNSGMDALQ 92 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT--------CCSSS-HHHHHHH----HHHHHHTTSSE-----EEEESCHHHHHH
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC--------CCCCc-hhHHHHH----HHHHHHHCCCe-----EEEecCHHHHHH
Confidence 456777777666799999998887542 12222 3344444 67888999862 466789999999
Q ss_pred HHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008 174 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252 (520)
Q Consensus 174 ~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~ 252 (520)
.++.++ ++|||+|+++++.|.+... .+...|. +++.++++++++.+|++++++++++ ++++|+++++
T Consensus 93 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n~- 160 (399)
T 2oga_A 93 LALRGLGIGPGDEVIVPSHTYIASWL--------AVSATGA--TPVPVEPHEDHPTLDPLLVEKAITP-RTRALLPVHL- 160 (399)
T ss_dssp HHHHHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCSSSSSBCHHHHHHHCCT-TEEEECCBCG-
T ss_pred HHHHHhCCCCcCEEEECCCccHHHHH--------HHHHCCC--EEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEeCC-
Confidence 999999 9999999999998765421 2334455 6667777755678999999999987 7898875432
Q ss_pred CCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCCC-CceEEEeeCCCcchhhHHH
Q 010008 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGP-RGGMIFFKKDPVLGVELES 329 (520)
Q Consensus 253 ~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~Gp-rgG~I~~~~~~~~~~~l~~ 329 (520)
.+...|+++|.++|+++|+++|+|++|..|....+.... ...|++++|+| |++.++ ++|+++++++ ++.+
T Consensus 161 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~di~~~S~~~sK~~~~~G~~g~~~~~~~-----~~~~ 233 (399)
T 2oga_A 161 YGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIG--AGSSVAAFSFYPGKNLGCFGDGGAVVTGDP-----ELAE 233 (399)
T ss_dssp GGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETT--CTTCEEEEECCTTSSSCCSSCCEEEEESCH-----HHHH
T ss_pred cCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecc--cccCEEEEeCCCCccCCcCCceEEEEeCCH-----HHHH
Confidence 233789999999999999999999999777543221111 13699999995 998553 8899998743 5555
Q ss_pred hhcccCCC-----------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCee
Q 010008 330 AINNAVFP-----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL 397 (520)
Q Consensus 330 ~i~~~~~p-----------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~ 397 (520)
++...... +....++....++...+++. +++..++..++++.+.+.|.+. |+++.........
T Consensus 234 ~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 308 (399)
T 2oga_A 234 RLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDP 308 (399)
T ss_dssp HHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEEC
T ss_pred HHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcc
Confidence 44332111 11112233333333333432 3455667777788888888774 7766432111222
Q ss_pred EE--EEecCCCCCHHHHHHHHhhcCeEEcCCC-CCCCC-----------CCC------CCCEEEEccCCccccCCCHHHH
Q 010008 398 VL--VDLRPMGIDGARVEKILDMASITLNKNS-VPGDK-----------SAL------VPGGIRIGSPAMTTRGFSEKEF 457 (520)
Q Consensus 398 ~~--vd~~~~g~~~~~~~~~L~~~gI~v~~~~-~Pg~~-----------~~~------~~~giRig~~~~tt~g~~~~d~ 457 (520)
++ +.+. ..+..++.+.|.+.||.+...+ .|.+. ... ..+.|||+.+..+ +++|+
T Consensus 309 ~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~----t~edi 382 (399)
T 2oga_A 309 VWHLFTVR--TERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHL----ERPQA 382 (399)
T ss_dssp CCSSEEEE--CSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTC----CHHHH
T ss_pred eeEEEEEE--CCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCC----CHHHH
Confidence 22 2222 2357788889999999987532 11000 000 0257999976544 58999
Q ss_pred HHHHHHHHHHHH
Q 010008 458 VAIADFIHEGVE 469 (520)
Q Consensus 458 ~~la~~i~~~l~ 469 (520)
+++++.|+++++
T Consensus 383 ~~~~~~l~~~~~ 394 (399)
T 2oga_A 383 LRVIDAVREWAE 394 (399)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 103
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.92 E-value=3.7e-23 Score=217.26 Aligned_cols=303 Identities=13% Similarity=0.069 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHcCCCCCC------CceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccc
Q 010008 139 ELETLCQKRALAAFNLDENK------WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 211 (520)
Q Consensus 139 ~lE~~a~~~~~~lfg~~~~~------~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~ 211 (520)
++.+...+++++.+|.+.+. . -+|.+++|+ +|+.+++.++++|||+|++.+|.|.++.. .+...
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~ 152 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQ-MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ--------SLHPL 152 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTC-EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHGGG
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCc-CcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHc
Confidence 44445557888888987521 0 156667776 89999999999999999999998765421 23345
Q ss_pred cceEEEEEcccCCCCCCCCHHHHHHHhhh-----------cCCcEEEE-cCCCCCC--CCCHH---HHHHHHHHhCCEEE
Q 010008 212 SIYFESMPYRLDESTGLVDYDMLEKTAIL-----------FRPKLIIA-GASAYPR--DFDYP---RMRQIADAVGALLM 274 (520)
Q Consensus 212 g~~~~~v~~~~d~~~~~iD~d~le~~i~~-----------~~pklIi~-~~s~~p~--~~d~~---~i~~ia~~~g~~li 274 (520)
|. +++.++++. + .+|+++|+++++. .++|+|++ ..++||+ ..+.+ +|.++|+++|++||
T Consensus 153 g~--~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li 228 (425)
T 2r2n_A 153 GC--NIINVASDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLII 228 (425)
T ss_dssp TC--EEEEECEET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CC--EEEEeCcCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 55 666666763 2 4899999999872 26898877 4778886 56544 89999999999999
Q ss_pred EechhhcccccccccCCCC---C--cccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHH
Q 010008 275 MDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTI 348 (520)
Q Consensus 275 ~D~Ah~~gli~~~~~~~p~---~--~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~i 348 (520)
+|++|. ++.+.+....++ . +.++++.|+||++ +|+|.|++++++ ++.+.+.........+ ++....
T Consensus 229 ~De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~------~l~~~l~~~~~~~~~~-~~~~~q 300 (425)
T 2r2n_A 229 EDDPYY-FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK------PLIERVILHIQVSTLH-PSTFNQ 300 (425)
T ss_dssp EECTTG-GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH------HHHHHHHHHHHTTTCS-SCHHHH
T ss_pred EECCcc-cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH------HHHHHHHHHHHHhcCC-CCHHHH
Confidence 999965 444433211122 1 2358889999998 577889999998 6666665432222222 334444
Q ss_pred HHHHHHHHHhcC----chhHHHHHHHHHHHHHHHHHHHHC--CCE-EecCCCCCeeEEEEecCCCCCHHH-HHHHHhhcC
Q 010008 349 GGLAVCLKHAQS----PEFKVYQNKVVSNCRALASRLVEL--GYK-LVSGGSDNHLVLVDLRPMGIDGAR-VEKILDMAS 420 (520)
Q Consensus 349 aala~al~~~~~----~~~~~~~~~i~~na~~l~~~L~~~--G~~-v~~~gt~~~~~~vd~~~~g~~~~~-~~~~L~~~g 420 (520)
+++..+|+.... ...++..+++.++++.+.+.|.+. |+. +..+ ....++|+++.. ..+..+ +.+.|.++|
T Consensus 301 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p-~~g~~~~~~~~~-~~~~~~~~~~~l~~~g 378 (425)
T 2r2n_A 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP-AAGMFLWIKVKG-INDVKELIEEKAVKMG 378 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC-SBSSEEEEEETT-CSCCHHHHHTHHHHTT
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC-CceEEEEEEeCC-CCCHHHHHHHHHHHCC
Confidence 444455654321 223556677788888999999873 763 4333 335667888853 234444 678888999
Q ss_pred eEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 421 I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
|.+..+...+.......+++||++.. .++++++++++.|.++++
T Consensus 379 v~v~pg~~f~~~~~~~~~~iRis~~~-----~~~~~i~~~~~~l~~~l~ 422 (425)
T 2r2n_A 379 VLMLPGNAFYVDSSAPSPYLRASFSS-----ASPEQMDVAFQVLAQLIK 422 (425)
T ss_dssp EECEEGGGGSSSTTSCCCEEEEECSS-----CCHHHHHHHHHHHHHHHH
T ss_pred cEEechhhhcCCCCCCCCEEEEEeCC-----CCHHHHHHHHHHHHHHHH
Confidence 99964432221111134789999653 358999999999988875
No 104
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.92 E-value=9.3e-24 Score=221.68 Aligned_cols=339 Identities=14% Similarity=0.081 Sum_probs=217.3
Q ss_pred ccceEecCCCC-ChHHHHHHHhhhhhcc----------CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC----CCCCC
Q 010008 94 KSLELIASENF-TSRAVMEAVGSCLTNK----------YSEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENK 158 (520)
Q Consensus 94 ~~i~Liasen~-~~~~V~ea~~s~l~~~----------y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg----~~~~~ 158 (520)
..|+|..++|+ .++.+.+++....... ...+|+.. .| ..++++...+++.+.+| ++++
T Consensus 37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~---~g---~~~lr~~la~~~~~~~g~~~~~~~~- 109 (428)
T 1iay_A 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDY---HG---LPEFRKAIAKFMEKTRGGRVRFDPE- 109 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCT---TC---CHHHHHHHHHHHHHHTTTCSCCCTT-
T ss_pred ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCC---CC---cHHHHHHHHHHHHHhcCCCCCCChh-
Confidence 34678777876 4567777776432100 01123321 12 34566566667777777 4454
Q ss_pred CceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHH
Q 010008 159 WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEK 236 (520)
Q Consensus 159 ~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~ 236 (520)
+|.+++|+ +++.+++.++++|||+|++++|.|.++.. . .....|. +++.++++.+ ++.+|++++++
T Consensus 110 ---~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~-~------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~ 177 (428)
T 1iay_A 110 ---RVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR-D------LRWRTGV--QLIPIHCESSNNFKITSKAVKE 177 (428)
T ss_dssp ---SCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH-H------TTTTTCC--EEEEECCCTTTTTCCCHHHHHH
T ss_pred ---hEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH-H------HHHhcCC--EEEEeecCCccCCcCCHHHHHH
Confidence 44557776 89999999999999999999998865421 1 1123454 5666666543 45789999999
Q ss_pred Hhhhc-----CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC----Cc-------
Q 010008 237 TAILF-----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KY------- 295 (520)
Q Consensus 237 ~i~~~-----~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~----~~------- 295 (520)
++++. ++++|+++.++||+ ..+ +++|.++|+++|++||+|++|.. +.+.+....++ ..
T Consensus 178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
T 1iay_A 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAA-TVFDTPQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGG-GCCSSSCCCCHHHHHTSGGGTTSC
T ss_pred HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccc-cccCCCCccCHHHhccccccccCC
Confidence 88752 68988888888876 667 89999999999999999999764 33222111111 12
Q ss_pred cc--EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh--cCchhHHHHHH
Q 010008 296 CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--QSPEFKVYQNK 369 (520)
Q Consensus 296 aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~--~~~~~~~~~~~ 369 (520)
.| +++.|+||++ +|.|.|+++++++ ++.+.+.....+ .+. +....+++..+++.. ....+++..++
T Consensus 257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~-----~~~~~~~~~~~~--~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 328 (428)
T 1iay_A 257 KDLVHIVYSLSKDMGLPGFRVGIIYSFND-----DVVNCARKMSSF--GLV-STQTQYFLAAMLSDEKFVDNFLRESAMR 328 (428)
T ss_dssp TTSEEEEEESTTTSSCGGGCEEEEEESCH-----HHHHHHHHHHTT--SCC-CHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecchhhcCCCCceEEEEEeCCH-----HHHHHHHHHHhc--ccC-CHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 57 8899999998 6778899999542 566655543222 122 233333333333321 01123567778
Q ss_pred HHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC-----CCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEc
Q 010008 370 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----IDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIG 443 (520)
Q Consensus 370 i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g-----~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig 443 (520)
+.++++.+.+.|.+.|++++.+ ..+.++++++.... .+..++.+.|.+ +||.+..+...+ ...++++||+
T Consensus 329 ~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~---~~~~~~iRis 404 (428)
T 1iay_A 329 LGKRHKHFTNGLEVVGIKCLKN-NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFE---CQEPGWFRVC 404 (428)
T ss_dssp HHHHHHHHHHHHHHTTCCBCCC-SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGT---CSSSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcccCC-CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEE
Confidence 8888999999998888876543 23456777775321 123456666654 599996432111 1125689999
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 444 SPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 444 ~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+.. .++++++++++.|+++++
T Consensus 405 ~~~-----~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 405 FAN-----MDDGTVDIALARIRRFVG 425 (428)
T ss_dssp CSS-----SCHHHHHHHHHHHHHHHH
T ss_pred Eec-----CCHHHHHHHHHHHHHHHh
Confidence 752 358999999999998875
No 105
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.92 E-value=2.3e-25 Score=229.55 Aligned_cols=320 Identities=13% Similarity=0.072 Sum_probs=209.3
Q ss_pred CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CC
Q 010008 103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LK 181 (520)
Q Consensus 103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~ 181 (520)
+.+++.+++++...+...+ |...+...++| +.+++++|.+. .+.+.||++|+..++.++ ++
T Consensus 13 ~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~i~~~sgt~al~~~l~~l~~~ 74 (373)
T 3frk_A 13 DEIEYEIKFKFEEIYKRNW---------FILGDEDKKFE----QEFADYCNVNY-----CIGCGNGLDALHLILKGYDIG 74 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------CSSSHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHCCC---------ccCCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCC
Confidence 3457888888887776432 12224455555 67888999863 356688999999999999 99
Q ss_pred CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHH
Q 010008 182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR 261 (520)
Q Consensus 182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~ 261 (520)
|||+|+++++.|.+... .+...|. +++.++++++++.+|++++++++++ ++++|++.++ .+...|+++
T Consensus 75 ~gd~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n~-~G~~~~l~~ 142 (373)
T 3frk_A 75 FGDEVIVPSNTFIATAL--------AVSYTGA--KPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVHL-YGQPADMDE 142 (373)
T ss_dssp TTCEEEEETTSCTHHHH--------HHHHHSC--EEEEECEETTTTEECGGGTGGGCCT-TEEEEEEECC-TTCCCCHHH
T ss_pred CcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEeccccccCcCHHHHHHhcCC-CCeEEEEECC-CcCcccHHH
Confidence 99999999998866431 2334454 6777778767789999999999987 8998885432 334789999
Q ss_pred HHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCC-CCceEEEeeCCCcchhhHHHhhcccCCCC
Q 010008 262 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELESAINNAVFPG 338 (520)
Q Consensus 262 i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~G-prgG~I~~~~~~~~~~~l~~~i~~~~~p~ 338 (520)
|.++|+++|++||+|++|..|....+.... ..+|++++|+| |++++ ++||+++++++ ++.+++......+
T Consensus 143 i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~-----~~~~~~~~~~~~g 215 (373)
T 3frk_A 143 IKRIAKKYNLKLIEDAAQAHGSLYKGMKVG--SLGDAAGFSFYPAKNLGSLGDGGAVVTNDK-----DLAEKIKALSNYG 215 (373)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSSCEEEEESCH-----HHHHHHHHHHBTT
T ss_pred HHHHHHHcCCEEEEECCcccCCEECCEecc--ccccEEEEeCcCCCccCccceeEEEEeCCH-----HHHHHHHHHHhcC
Confidence 999999999999999999887663322111 13689988855 99987 67899999873 4544443221111
Q ss_pred --------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC--CCC--eeEEEEecCCC
Q 010008 339 --------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG--SDN--HLVLVDLRPMG 406 (520)
Q Consensus 339 --------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g--t~~--~~~~vd~~~~g 406 (520)
..|.+. .+.++..++.......+++..++..++++++.+.|.+.++.+.... ... +.+.+..
T Consensus 216 ~~~~~~~~~~g~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 289 (373)
T 3frk_A 216 SEKKYHHIYKGFNS--RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS---- 289 (373)
T ss_dssp CSBTTBCCSCCCBC--CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE----
T ss_pred cccCCccccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe----
Confidence 011100 0111112222221234566677778888888888877664443211 111 2222222
Q ss_pred CCHHHHHHHHhhcCeEEcCCC-CCCCCCC-----------C------CCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 407 IDGARVEKILDMASITLNKNS-VPGDKSA-----------L------VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 407 ~~~~~~~~~L~~~gI~v~~~~-~Pg~~~~-----------~------~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
.+.+.+.+.|.+.||.++..+ .|.+..+ + ..+.||+++... ++++|++++++.|++..
T Consensus 290 ~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~----~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 290 EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYG----MKNEEIEYVIDKINAWK 365 (373)
T ss_dssp SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTT----CCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCC----CCHHHHHHHHHHHHHHh
Confidence 157889999999999998653 2221100 0 016799987754 45999999999987654
Q ss_pred H
Q 010008 469 E 469 (520)
Q Consensus 469 ~ 469 (520)
.
T Consensus 366 ~ 366 (373)
T 3frk_A 366 L 366 (373)
T ss_dssp -
T ss_pred h
Confidence 3
No 106
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.92 E-value=7.9e-24 Score=217.82 Aligned_cols=325 Identities=13% Similarity=0.034 Sum_probs=216.4
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh-
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG- 168 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG- 168 (520)
+.|+|..+++. .|+.|++++...+.. ..+|+.. .| ..++++...+++.+.+|+ +++ +|.+++|
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~---~g---~~~lr~~la~~l~~~~g~~~~~~----~i~~t~g~ 91 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHS--LNIYPKS---AF---EESLRAAQRGFFKRRFKIELKEN----ELISTLGS 91 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGG--GGSCCCT---TC---CHHHHHHHHHHHHHHHSCCCCGG----GEEEESSS
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhh--cCCCCCC---CC---CHHHHHHHHHHHHHHhCCCCCHH----HEEECcCc
Confidence 45788777763 579999999887732 2234431 11 235565666788888898 454 3444554
Q ss_pred HHHHHHHHHhhCCC--CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008 169 SPANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 169 s~A~~~~l~all~p--GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI 246 (520)
++|+..++.++++| ||+|++.+|.|.++.. .+...|. +++.++++.+ +.+++ ++++.+.+ ++++|
T Consensus 92 ~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~~~-~l~~~~~~-~~~~v 158 (376)
T 3ezs_A 92 REVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG--------AAKFIKA--KSLLMPLTKE-NDFTP-SLNEKELQ-EVDLV 158 (376)
T ss_dssp HHHHHHHHHHHTTTCSSCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGG-GTSCC-CCCHHHHH-HCSEE
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCcHhHHH--------HHHHcCC--EEEEcccCCC-CCcch-hHHhhhcc-CCCEE
Confidence 59999999999999 9999999998765421 2233454 5666666533 23444 66667766 79999
Q ss_pred EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC----------CCcccEEEeccCccc--CC
Q 010008 247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP----------FKYCDVVTTTTHKSL--RG 309 (520)
Q Consensus 247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p----------~~~aDiv~~S~hK~l--~G 309 (520)
+++.++||+ ..+ +++|+++|+++|++||+|++|.. +...+..... ....++++.|+||++ +|
T Consensus 159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 237 (376)
T 3ezs_A 159 ILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG 237 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG
T ss_pred EEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCCCCCHHHccccccccccCcEEEEecchhccCCcc
Confidence 999888886 455 66777889999999999999654 3333311111 113568899999997 67
Q ss_pred CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008 310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV 389 (520)
Q Consensus 310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~ 389 (520)
.|.|++++++ ++.+.+....... ..+++....+++..+++. ....++..+++.++++.+.+.|. |+.
T Consensus 238 ~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~-- 304 (376)
T 3ezs_A 238 LRSGFIAGDS------RLLEKYKAFRAYL-GYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL-- 304 (376)
T ss_dssp GCCEEEEECH------HHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--
T ss_pred ceeEEEeeCH------HHHHHHHHHHhhh-cCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--
Confidence 8889999877 6776665432222 223344445554455653 23356777888888888888886 665
Q ss_pred cCCCCCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 390 SGGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 390 ~~gt~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
.+ ..+.++++++. +..++.+.|.+ +||.+..+..++. ....++++||++.. +++|++++++.|.+++
T Consensus 305 ~~-~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~~~iRis~~~------~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 305 IY-PYSFYVYLPVQ----NGENFAKTLYQNEGIITLPALYLGR-NRIGADYVRLALVY------DTPLLEKPLEIIETYR 372 (376)
T ss_dssp CC-SBSSEEEEECS----CHHHHHHHHHHHHCCBCEEGGGGCS-TTTTTTEEEEECCS------CHHHHHHHHHHHHHHH
T ss_pred CC-CcceEEEEECC----CHHHHHHHHHHhCCEEEeCcHHhCC-CCCCCCeEEEEEcC------CHHHHHHHHHHHHHHH
Confidence 22 23456777774 56777777765 9999864432221 12346799998652 5899999999998876
Q ss_pred H
Q 010008 469 E 469 (520)
Q Consensus 469 ~ 469 (520)
+
T Consensus 373 ~ 373 (376)
T 3ezs_A 373 E 373 (376)
T ss_dssp C
T ss_pred H
Confidence 4
No 107
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.92 E-value=1.8e-23 Score=220.08 Aligned_cols=339 Identities=15% Similarity=0.089 Sum_probs=215.9
Q ss_pred ccceEecCCCC-ChHHHHHHHhhhhhccC-C----------CCCCCCCCCCcchhHHHHHHHHHHHHHHHcC----CCCC
Q 010008 94 KSLELIASENF-TSRAVMEAVGSCLTNKY-S----------EGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDEN 157 (520)
Q Consensus 94 ~~i~Liasen~-~~~~V~ea~~s~l~~~y-~----------~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg----~~~~ 157 (520)
..|+|..++|+ ..+.+.+++........ . .+|+. .....++++...+++.+.+| ++++
T Consensus 39 ~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~------~~g~~~l~~~la~~~~~~~~~~~~~~~~ 112 (435)
T 3piu_A 39 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQD------YHGLPAFKKAMVDFMAEIRGNKVTFDPN 112 (435)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCC------TTCCHHHHHHHHHHHHHHTTTSSCCCGG
T ss_pred CeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCC------CCCcHHHHHHHHHHHHHhhCCCCCCCHH
Confidence 35788888886 56677777765443111 0 12322 22234666555556655554 4454
Q ss_pred CCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc-cccceEEEEEcccCCC-CCCCCHHHH
Q 010008 158 KWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDES-TGLVDYDML 234 (520)
Q Consensus 158 ~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~-~~g~~~~~v~~~~d~~-~~~iD~d~l 234 (520)
+|.+++|+ +||.+++.++++|||+|++.+|.|.++.. .+. ..|. +++.++++++ ++.+|+++|
T Consensus 113 ----~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~~d~~~l 178 (435)
T 3piu_A 113 ----HLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGV--EIVPIHCTSSNGFQITETAL 178 (435)
T ss_dssp ----GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCC--EEEEEECCGGGTSCCCHHHH
T ss_pred ----HEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHH--------HHHHhcCC--EEEEeeCCCccCCcCCHHHH
Confidence 34456655 99999999999999999999998865531 122 3455 5666666543 357899999
Q ss_pred HHHhhhc-----CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--c-------
Q 010008 235 EKTAILF-----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y------- 295 (520)
Q Consensus 235 e~~i~~~-----~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~------- 295 (520)
++++++. ++++|+++.++||+ ..+ +++|+++|+++|++||+|++|..+ .+.+....++. .
T Consensus 179 ~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~d~ 257 (435)
T 3piu_A 179 EEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT-AFSSPSFISVMEVLKDRNCDE 257 (435)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-CCSSSCCCCHHHHHHC-----
T ss_pred HHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCCCCCcCHHHhcccccccc
Confidence 9998763 78999998888886 444 578888999999999999997543 33322111110 0
Q ss_pred ----cc--EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc--CchhHH
Q 010008 296 ----CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKV 365 (520)
Q Consensus 296 ----aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~--~~~~~~ 365 (520)
.| +++.|+||++ +|.|.|+++++++ ++.+.+......+ + .+....++++.++.... ....++
T Consensus 258 ~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~ 329 (435)
T 3piu_A 258 NSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD-----MVVAAATKMSSFG--L-VSSQTQHLLSAMLSDKKLTKNYIAE 329 (435)
T ss_dssp --CGGGGEEEEEESSSSSCCGGGCEEEEEESCH-----HHHHHHHHHGGGS--C-CCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ccCCCCCEEEEEeeecccCCCceeEEEEEeCCH-----HHHHHHHHHhhcC--C-CCHHHHHHHHHHhcChHHHHHHHHH
Confidence 12 8889999987 6778899999653 5555554332221 1 12223333333343210 112356
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCC-----CHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCE
Q 010008 366 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGI-----DGARVEKIL-DMASITLNKNSVPGDKSALVPGG 439 (520)
Q Consensus 366 ~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~-----~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~g 439 (520)
..+++.++++.+.+.|.+.|++++.+ ..++++++++..... +..++.+.| +++||.+..+..+ .+..++.
T Consensus 330 ~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~ 405 (435)
T 3piu_A 330 NHKRLKQRQKKLVSGLQKSGISCLNG-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSC---HCTEPGW 405 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCC-CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGG---TCSSTTE
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCC-CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCccc---CCCCCCE
Confidence 67778888899999998889987754 234667887753210 223444444 5669998543221 2234679
Q ss_pred EEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+||++..+ ++++++++++.|.++++.
T Consensus 406 iRi~~~~~-----~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 406 FRVCFANL-----PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp EEEECSSS-----CHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCC-----CHHHHHHHHHHHHHHHHH
Confidence 99997533 479999999999988764
No 108
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.92 E-value=5.1e-23 Score=221.67 Aligned_cols=304 Identities=11% Similarity=0.065 Sum_probs=217.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCC--CCCceeeecCChHHHHHHHHHhhCCCC--------CEEEEcCCCCCcccccccccc
Q 010008 135 EYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPANFEVYTAILKPH--------DRIMGLDLPHGGHLSHGFMTP 204 (520)
Q Consensus 135 ~~~d~lE~~a~~~~~~lfg~~~--~~~~~~V~~~sGs~A~~~~l~all~pG--------D~Vl~~~~~~~ghls~g~~~~ 204 (520)
+...++|...++++++++|++. +++ ..+.+++|++|+..++.++.++| |+|++..+.|.+..
T Consensus 135 p~~~~le~~l~~~la~~~g~~~~~~~v-~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~------- 206 (514)
T 3mad_A 135 PSTAKFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD------- 206 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGGTSCC-EEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH-------
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccCCc-ceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH-------
Confidence 4456788888899999999984 322 11444566699999999998877 99999998776532
Q ss_pred ccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcc
Q 010008 205 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISG 282 (520)
Q Consensus 205 ~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~g 282 (520)
+.+...|. +++.++++. ++.+|+++|++++++ ++++|+++.++||+ ..|+++|+++|+++|++||+|++|..+
T Consensus 207 -~~~~~~G~--~v~~v~~~~-~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~ 281 (514)
T 3mad_A 207 -KAAQYFGI--KLVRTPLDA-DYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGF 281 (514)
T ss_dssp -HHHHHHTC--EEEEECBCT-TSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred -HHHHHcCC--eeEEeeeCC-CCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccc
Confidence 13344565 566677764 788999999999987 89999999888865 789999999999999999999997654
Q ss_pred ccc----ccccCCCC----CcccEEEeccCcccCCC-CceEEEeeCCCcchhhHHHhhcc---------cCCCCCCCCCh
Q 010008 283 LVA----ASVVADPF----KYCDVVTTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINN---------AVFPGLQGGPH 344 (520)
Q Consensus 283 li~----~~~~~~p~----~~aDiv~~S~hK~l~Gp-rgG~I~~~~~~~~~~~l~~~i~~---------~~~p~~~g~p~ 344 (520)
... .+....++ .++|++++|+||++.|+ +.|+++++++ .+...... ...+...|++.
T Consensus 282 ~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~gs~~ 356 (514)
T 3mad_A 282 ILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRP-----DLLHYQYFIAADWPGGLYFSPTFAGSRP 356 (514)
T ss_dssp THHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSH-----HHHTTTCEEESSCTTCSEEESSSCSSCC
T ss_pred cchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCH-----HHhccccccccccCCCcccCCccCCCCc
Confidence 331 11100112 26899999999997555 4599999873 22221100 01123356666
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEE
Q 010008 345 NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423 (520)
Q Consensus 345 ~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v 423 (520)
...++++.++++.+...++++..+++.++++++.+.|.+. |++++.+. ..++++.. .+.+..++.+.|.+.||.+
T Consensus 357 ~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~--~~~~~~~l~~~L~~~Gi~v 432 (514)
T 3mad_A 357 GALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVAS--DELNIYQVMEEMAGRGWRL 432 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEEC--SSSCHHHHHHHHHTTTCBC
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeC--CCCCHHHHHHHHHhcCCEe
Confidence 6666677777776655567888999999999999999884 88887653 23444433 4567788889998899987
Q ss_pred cCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 424 ~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
... ..+..+|++..... .++++++++.+.|+++++..
T Consensus 433 ~g~--------~~~~~~Ri~~~~~~---~~~e~i~~~l~~L~~~l~~~ 469 (514)
T 3mad_A 433 NGL--------HRPPAFHVALTLRH---TEPGVVDRFLADLQDAVAQV 469 (514)
T ss_dssp EEE--------TTTTEEEEECCGGG---GSTTHHHHHHHHHHHHHHHH
T ss_pred ccC--------CCCCeEEEEEecCC---CCHHHHHHHHHHHHHHHHHH
Confidence 221 12467999865333 34689999999999988754
No 109
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.92 E-value=1.8e-23 Score=217.41 Aligned_cols=331 Identities=17% Similarity=0.156 Sum_probs=219.6
Q ss_pred ceEecCCC-C--ChHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008 96 LELIASEN-F--TSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 171 (520)
Q Consensus 96 i~Liasen-~--~~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A 171 (520)
+++..+++ . .+|.|++++...+.+.. .+..+.+ .|+..+..++++ +.+++++|.+ + +|.+++|+++
T Consensus 49 i~~~~~~~~~~~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~----~~la~~~~~~-~----~i~~~sG~~a 118 (401)
T 2bwn_A 49 TVWCGNDYLGMGQHPVVLAAMHEALEAVG-AGSGGTRNISGTTAYHRRLE----AEIAGLHQKE-A----ALVFSSAYNA 118 (401)
T ss_dssp EECSCSCTTSGGGCHHHHHHHHHHHHHHC-SCCCSBTTTBCCBHHHHHHH----HHHHHHTTCS-E----EEEESCHHHH
T ss_pred EEeeCCCcccCCCCHHHHHHHHHHHHHcC-CCCCCcCcccCChHHHHHHH----HHHHHHhCCC-c----EEEECCcHHH
Confidence 44444444 1 36789999988876422 1111111 233334444444 6788899974 2 5667999998
Q ss_pred HHHHHHhhC--CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---cCCcEE
Q 010008 172 NFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLI 246 (520)
Q Consensus 172 ~~~~l~all--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~~pklI 246 (520)
+..++.++. +|||+|++.++.|++... .+...|. +++.++.+ |+++++++++. .++++|
T Consensus 119 ~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~------d~~~le~~l~~~~~~~~~~v 182 (401)
T 2bwn_A 119 NDATLSTLRVLFPGLIIYSDSLNHASMIE--------GIKRNAG--PKRIFRHN------DVAHLRELIAADDPAAPKLI 182 (401)
T ss_dssp HHHHHHHHHHHSTTCEEEEETTCCHHHHH--------HHHHSCC--CEEEECTT------CHHHHHHHHHHSCTTSCEEE
T ss_pred HHHHHHHHhcCCCCCEEEECchhhHHHHH--------HHHHcCC--eEEEEcCC------CHHHHHHHHHhhccCCceEE
Confidence 888877653 699999999988765431 2233454 45555542 78999988873 278999
Q ss_pred EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-cc--c--CCCCCcccEEEeccCcccCCCCceEEEeeC
Q 010008 247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--V--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 319 (520)
Q Consensus 247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~--~--~~p~~~aDiv~~S~hK~l~GprgG~I~~~~ 319 (520)
++++++||+ ..|+++|.++|+++|+++|+|++|..|.... +. . ....+..|+++.|++|++.+ .||++++++
T Consensus 183 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~ 261 (401)
T 2bwn_A 183 AFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASA 261 (401)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECH
T ss_pred EEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCH
Confidence 999888875 7899999999999999999999998665321 11 0 01011358999999999864 469998876
Q ss_pred CCcchhhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008 320 DPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL 397 (520)
Q Consensus 320 ~~~~~~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~ 397 (520)
++.+.+.... +....+++. ..++++..+++.....++++..+++.++++++.+.|.+.|++++.+ ..++
T Consensus 262 ------~~~~~l~~~~~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~ 332 (401)
T 2bwn_A 262 ------RMVDAVRSYAPGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--GSHI 332 (401)
T ss_dssp ------HHHHHHHHHCHHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--SSSC
T ss_pred ------HHHHHHHHhCcCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--CCCe
Confidence 5655544211 111234444 5556666678776544457788899999999999998878877653 2356
Q ss_pred EEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 398 VLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 398 ~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+++++.. +.+..++.+.| ++.||.+.....|+. +...+.+|++.+..+ +++|++++++.|+++++
T Consensus 333 ~~~~~~~-~~~~~~~~~~L~~~~gi~v~~~~~~~~--~~~~~~iRis~~~~~----t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 333 VPVVIGD-PVHTKAVSDMLLSDYGVYVQPINFPTV--PRGTERLRFTPSPVH----DLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp EEEECCC-HHHHHHHHHHHHHHHCEECCEECTTTS--CTTCCEEEECCCTTS----CHHHHHHHHHHHHHHC-
T ss_pred EEEEeCC-hHHHHHHHHHHHhcCCEEEeecCCCCC--CCCCceEEEEeeCCC----CHHHHHHHHHHHHHHHH
Confidence 7777642 23455677777 589999954332221 112358999987543 58999999999988764
No 110
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.92 E-value=8.2e-23 Score=217.99 Aligned_cols=327 Identities=16% Similarity=0.136 Sum_probs=214.9
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh----C
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----L 180 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al----l 180 (520)
..|.+.+++.+.++ .|. -|.... ..+...+++...++++++++|++. ..+.+.+|++|+.+++.++ .
T Consensus 78 ~~p~v~~~~~~~~~-~~~-~~~~~~---~~~g~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al~~~~~~~~ 148 (474)
T 1wyu_B 78 YNPKLHEEAARLFA-DLH-PYQDPR---TAQGALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHE 148 (474)
T ss_dssp CCCHHHHHHHHTTS-SCC-TTSCGG---GCHHHHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hcC-CCCchh---hChHHHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHHHHHHHHHH
Confidence 34677777766532 221 111100 122234555667789999999975 2345577779998766554 4
Q ss_pred CCCC-----EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008 181 KPHD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 255 (520)
Q Consensus 181 ~pGD-----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~ 255 (520)
++|| +|+++++.|+.+.. .+...|. +++.++++ +++.+|+++|++++++ ++++|+++++|+.+
T Consensus 149 ~~Gd~~~r~~Vlv~~~~h~~~~~--------~~~~~G~--~vv~v~~~-~~~~~d~~~L~~~i~~-~t~~v~~~~pn~~G 216 (474)
T 1wyu_B 149 DRGEGRTRRVVLVPDSAHGSNPA--------TASMAGY--QVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTLG 216 (474)
T ss_dssp HTTCTTTCCEEEEETTSCTHHHH--------HHHHTTC--EEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTS
T ss_pred hcCCccCCCEEEEeCCcChhhHH--------HHHHCCC--EEEEecCC-CCCCcCHHHHHHhhCC-CceEEEEECCCCCc
Confidence 6898 99999987765431 2344565 66777776 4688999999999987 79999998876434
Q ss_pred -C-CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCC------CceEEEeeCCCcchhh
Q 010008 256 -D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP------RGGMIFFKKDPVLGVE 326 (520)
Q Consensus 256 -~-~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gp------rgG~I~~~~~~~~~~~ 326 (520)
. .|+++|+++|+++|+++++|++|..+.. +.. .+.. ++|++++|+||+|.+| +.|++++++ +
T Consensus 217 ~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~--g~~-~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~------~ 287 (474)
T 1wyu_B 217 LFERRILEISRLCKEAGVQLYYDGANLNAIM--GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA------H 287 (474)
T ss_dssp CCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECG------G
T ss_pred ccCCCHHHHHHHHHHcCCEEEEeCchhhhhc--cCC-CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcH------H
Confidence 4 5899999999999999999999865543 111 1111 5899999999998654 679999988 4
Q ss_pred HHHhhcccC-------C------C-----CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008 327 LESAINNAV-------F------P-----GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL 388 (520)
Q Consensus 327 l~~~i~~~~-------~------p-----~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v 388 (520)
+.+.+.... + + ...++++...+++....+......++++..+++.++++++.+.|.+.|+++
T Consensus 288 l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~ 367 (474)
T 1wyu_B 288 LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRV 367 (474)
T ss_dssp GGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred HHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEe
Confidence 555443100 0 0 011122332222222234333234567778889999999999998888887
Q ss_pred ecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
..++...+.+++++ +.+.+..++.+.|.+.||.+.....| ....+.+||+....+ +++|++++++.|++++
T Consensus 368 ~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~Gi~~~~~~~~----~~~~~~lRis~~~~~----t~e~id~~~~~L~~~~ 438 (474)
T 1wyu_B 368 PYDGPSMHEFVAQP-PEGFRALDLAKGLLELGFHPPTVYFP----LIVKEALMVEPTETE----AKETLEAFAEAMGALL 438 (474)
T ss_dssp SSCSSCCSCEEEBC-STTCCHHHHHHHHHHTTCCCCEESCS----TTSTTCEEECCCTTS----CHHHHHHHHHHHHHHH
T ss_pred cCCCCcceEEEEEc-CCCCCHHHHHHHHHHCCccccccccc----cccCCEEEEEeecCC----CHHHHHHHHHHHHHHH
Confidence 44332233356666 34567788888888889975211111 113578999876433 4899999999999887
Q ss_pred HH
Q 010008 469 EI 470 (520)
Q Consensus 469 ~~ 470 (520)
+.
T Consensus 439 ~~ 440 (474)
T 1wyu_B 439 KK 440 (474)
T ss_dssp TS
T ss_pred Hh
Confidence 54
No 111
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.92 E-value=8e-24 Score=235.43 Aligned_cols=301 Identities=14% Similarity=0.120 Sum_probs=210.4
Q ss_pred HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008 144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 222 (520)
Q Consensus 144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~ 222 (520)
++++++++||++. .+.+++|+ +||.++++++++|||+|++..+.|.+++. ++ +...|. +++.++.
T Consensus 178 ~e~~lA~~~gae~-----~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~-~~------~~l~Ga--~~v~v~~ 243 (730)
T 1c4k_A 178 AEKHAARVYNADK-----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN-SA------LAMAGG--RPVYLQT 243 (730)
T ss_dssp HHHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH-HH------TTTTCC--EEEEECE
T ss_pred HHHHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH-HH------HHHCCC--EEEEEeC
Confidence 4478999999985 24568887 89999999999999999999998765431 10 334565 4454444
Q ss_pred CCCC----CCCCHHHH-----HHHhhhcC-----C----cEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhccc
Q 010008 223 DEST----GLVDYDML-----EKTAILFR-----P----KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGL 283 (520)
Q Consensus 223 d~~~----~~iD~d~l-----e~~i~~~~-----p----klIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gl 283 (520)
+.++ +.+|+++| ++++++.. + |+|+++.+++.+ ..|+++|+++|+++|++|++|+||..++
T Consensus 244 ~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~ 323 (730)
T 1c4k_A 244 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 323 (730)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred CccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence 3222 33688887 88887630 3 888888776544 7899999999999999999999997665
Q ss_pred cccccc--CCCCC----ccc----EEEeccCcccCCCCc-eEEEeeCCCcch-hhH--HHhhcccCCCCCCCCChHHHHH
Q 010008 284 VAASVV--ADPFK----YCD----VVTTTTHKSLRGPRG-GMIFFKKDPVLG-VEL--ESAINNAVFPGLQGGPHNHTIG 349 (520)
Q Consensus 284 i~~~~~--~~p~~----~aD----iv~~S~hK~l~Gprg-G~I~~~~~~~~~-~~l--~~~i~~~~~p~~~g~p~~~~ia 349 (520)
.+.+.. .+++. ++| ++++|+||+|+|+++ |+|+++++.... ..+ ..+++........++|+...++
T Consensus 324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~ia 403 (730)
T 1c4k_A 324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYA 403 (730)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHH
T ss_pred ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHH
Confidence 433221 12331 577 999999999999886 788777641000 000 1122222111235678888999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecCCC----------------------------------
Q 010008 350 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGS---------------------------------- 393 (520)
Q Consensus 350 ala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~gt---------------------------------- 393 (520)
++.+|++.+..++..++.++..++++.+++.|.+ .|++++.+..
T Consensus 404 al~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 483 (730)
T 1c4k_A 404 ALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEG 483 (730)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccc
Confidence 9988888765434577889999999999999988 6888864311
Q ss_pred --CCe--e----EEEEe----------cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008 394 --DNH--L----VLVDL----------RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 455 (520)
Q Consensus 394 --~~~--~----~~vd~----------~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~ 455 (520)
+++ + +++.+ ...|+++..+.+.|++.||.+++. ....+|+.++ .|.+++
T Consensus 484 ~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~---------~~~~ir~~~s----~g~t~e 550 (730)
T 1c4k_A 484 YGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS---------DLNSILFLMT----PAETPA 550 (730)
T ss_dssp CCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---------CSSEEEEECC----TTCCHH
T ss_pred cCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC---------CCCeEEEEeC----CCCCHH
Confidence 111 1 34444 234678899999999999988542 2467898765 455689
Q ss_pred HHHHHHHHHHHHHHHH
Q 010008 456 EFVAIADFIHEGVEIT 471 (520)
Q Consensus 456 d~~~la~~i~~~l~~~ 471 (520)
|++++++.|.++.+..
T Consensus 551 ~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 551 KMNNLITQLLQLQRLI 566 (730)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887643
No 112
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.92 E-value=1.8e-23 Score=218.46 Aligned_cols=341 Identities=15% Similarity=0.110 Sum_probs=219.5
Q ss_pred ccceEecCC------CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc------C--CCCCCC
Q 010008 94 KSLELIASE------NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF------N--LDENKW 159 (520)
Q Consensus 94 ~~i~Liase------n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf------g--~~~~~~ 159 (520)
+.|+|..+. .++++.|++++...+.+....+|+. .....++++...+++.+.| | ++++
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~-- 105 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFP------TVGSPEAREAVATWWRNSFVHKEELKSTIVKD-- 105 (416)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCC------TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG--
T ss_pred CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCC------CCCCHHHHHHHHHHHHhhhcccccCCCCCCcc--
Confidence 457776554 2468999999988876432234432 1112355544444444222 2 4443
Q ss_pred ceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHH
Q 010008 160 GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKT 237 (520)
Q Consensus 160 ~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~ 237 (520)
+|.+++|+ +|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++|+++
T Consensus 106 --~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~ 173 (416)
T 1bw0_A 106 --NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET--------VCKAYGI--GMHFYNCRPENDWEADLDEIRRL 173 (416)
T ss_dssp --GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHHH
T ss_pred --eEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH--------HHHHcCc--EEEEeecCcccCCCCCHHHHHHH
Confidence 45556766 89999999999999999999998765421 2334455 5556666543 467999999999
Q ss_pred hhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc----cCCCCC----c-ccEEEecc
Q 010008 238 AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV----VADPFK----Y-CDVVTTTT 303 (520)
Q Consensus 238 i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~----~~~p~~----~-aDiv~~S~ 303 (520)
+++ ++++|+++.++||+ ..+ +++|.++|+++|++||+|++|.. +.+.+. ...++. . .++++.|+
T Consensus 174 l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~ 251 (416)
T 1bw0_A 174 KDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG-MVFKGKDPNATFTSVADFETTVPRVILGGT 251 (416)
T ss_dssp CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred hcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCCCccCHHHccCCCcEEEEecc
Confidence 987 78998888888886 666 89999999999999999999654 443332 111221 1 24778999
Q ss_pred Cccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008 304 HKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL 381 (520)
Q Consensus 304 hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L 381 (520)
||++ +|.|.|+++++++......+...+..... ...+++....+++..+|+......+++..+++.++++.+.+.|
T Consensus 252 sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 329 (416)
T 1bw0_A 252 AKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGM--LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHI 329 (416)
T ss_dssp TTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHH--HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhc--cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 67789999998730000112222211100 0123344555555556663322345777888899999999999
Q ss_pred HHC-CCEEecCCCCCeeEEEEecC----CCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008 382 VEL-GYKLVSGGSDNHLVLVDLRP----MGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 455 (520)
Q Consensus 382 ~~~-G~~v~~~gt~~~~~~vd~~~----~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~ 455 (520)
.+. |+.++.+. ...++++.+.. .+.+..++.+.| +++||.+..+...+ .++++||++. .+++
T Consensus 330 ~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-----~~~~iRis~~------~~~e 397 (416)
T 1bw0_A 330 GECIGLAPTMPR-GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-----APGFTRLTTT------RPVE 397 (416)
T ss_dssp TTSTTEEECCCC-BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECC------SCHH
T ss_pred HhCCCCcccCCC-eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC-----CCCeEEEEec------CCHH
Confidence 885 88776442 24556666642 124566666655 78999995432111 2578999973 3578
Q ss_pred HHHHHHHHHHHHHHH
Q 010008 456 EFVAIADFIHEGVEI 470 (520)
Q Consensus 456 d~~~la~~i~~~l~~ 470 (520)
++++..+.|.++++.
T Consensus 398 ~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 398 VYREAVERIKAFCQR 412 (416)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888764
No 113
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=1.9e-24 Score=222.37 Aligned_cols=320 Identities=18% Similarity=0.141 Sum_probs=213.2
Q ss_pred eEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHH
Q 010008 97 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 176 (520)
Q Consensus 97 ~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l 176 (520)
++..+.+++++.+++++...+...+ |+ ..+...++| +.+++++|.+. .+.++||++|+.+++
T Consensus 6 ~~~~~~~~~~~~v~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~sGt~al~~al 67 (367)
T 3nyt_A 6 DLKNQQARIKDKIDAGIQRVLRHGQ--------YI-LGPEVTELE----DRLADFVGAKY-----CISCANGTDALQIVQ 67 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHhcCC--------cc-CChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHH
Confidence 3333444567889999888776432 22 234455555 67888999873 356688999999999
Q ss_pred Hhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008 177 TAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 255 (520)
Q Consensus 177 ~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~ 255 (520)
.++ ++|||+|+++++.|.+... .+...|. +++.++++++++.+|++++++++++ ++++|+++++ ++.
T Consensus 68 ~~~~~~~gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-~G~ 135 (367)
T 3nyt_A 68 MALGVGPGDEVITPGFTYVATAE--------TVALLGA--KPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPVSL-YGQ 135 (367)
T ss_dssp HHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCBCG-GGC
T ss_pred HHhCCCCcCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHhcCc-CCcEEEeeCC-ccC
Confidence 999 9999999999988765431 2334454 7778888876789999999999977 8888884322 234
Q ss_pred CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEecc--CcccCC-CCceEEEeeCCCcchhhHHHhhc
Q 010008 256 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRG-PRGGMIFFKKDPVLGVELESAIN 332 (520)
Q Consensus 256 ~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~--hK~l~G-prgG~I~~~~~~~~~~~l~~~i~ 332 (520)
..|+++|.++|+++|++||+|++|..|....+..... ..|++++|+ ||++++ +.||+++++++ ++.+++.
T Consensus 136 ~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~Sf~~~K~l~~~g~gg~~~~~~~-----~l~~~~~ 208 (367)
T 3nyt_A 136 CADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCN--LSTVACTSFFPSAPLGCYGDGGAIFTNDD-----ELATAIR 208 (367)
T ss_dssp CCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCCEEEEESCH-----HHHHHHH
T ss_pred hhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccC--CCCEEEEECCCCCcCCCcCceeEEEeCCH-----HHHHHHH
Confidence 7899999999999999999999998876644322221 239999996 899976 45899999764 5655544
Q ss_pred ccCCC-----------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC----CCee
Q 010008 333 NAVFP-----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS----DNHL 397 (520)
Q Consensus 333 ~~~~p-----------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt----~~~~ 397 (520)
..... +.....+... +++ ++..+ ..+++..++..++++.+.+.|.+.|+.+..... ..++
T Consensus 209 ~~~~~g~~~~~~~~~~g~~~~~~~~~-aa~--~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 283 (367)
T 3nyt_A 209 QIARHGQDRRYHHIRVGVNSRLDTLQ-AAI--LLPKL--EIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQ 283 (367)
T ss_dssp HHTBTTEEETTEECSCCCBCCCCHHH-HHH--HHHHH--HTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSS
T ss_pred HHHhcCCCcCceeeccCcCCCccHHH-HHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEE
Confidence 32221 1111112111 221 22222 234566777888889999999887765543211 1123
Q ss_pred EEEEecCCCCCHHHHHHHHhhcCeEEcCCCC-CCCC-CCCC-------------CCEEEEccCCccccCCCHHHHHHHHH
Q 010008 398 VLVDLRPMGIDGARVEKILDMASITLNKNSV-PGDK-SALV-------------PGGIRIGSPAMTTRGFSEKEFVAIAD 462 (520)
Q Consensus 398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~-Pg~~-~~~~-------------~~giRig~~~~tt~g~~~~d~~~la~ 462 (520)
+.+.+. +.+.+.+.|.+.||.++..+. |.+. +++. .+.||+++.. .++++|++++++
T Consensus 284 ~~~~~~----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~----~~t~~~i~~v~~ 355 (367)
T 3nyt_A 284 YTVRMD----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHP----YLDTASIKIICA 355 (367)
T ss_dssp EEEECS----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCT----TCCHHHHHHHHH
T ss_pred EEEEeC----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCC----CCCHHHHHHHHH
Confidence 333332 578889999999999876542 3221 1111 2468887653 456999999999
Q ss_pred HHHH
Q 010008 463 FIHE 466 (520)
Q Consensus 463 ~i~~ 466 (520)
.|++
T Consensus 356 ~~~~ 359 (367)
T 3nyt_A 356 ALTN 359 (367)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8864
No 114
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=1.1e-23 Score=221.05 Aligned_cols=340 Identities=17% Similarity=0.081 Sum_probs=222.7
Q ss_pred hccceEecCCC----CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC---CCCCCCceee
Q 010008 93 FKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNV 163 (520)
Q Consensus 93 ~~~i~Liasen----~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg---~~~~~~~~~V 163 (520)
.+.|+|..+.. +.++.+.+++...+.... ..+|+. .....++++...+++.+.+| ++++ +|
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~g~~~lr~~la~~l~~~~g~~~~~~~----~v 112 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYST------TEGDPVLKQQILKLLERMYGITGLDED----NL 112 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCC------TTCCHHHHHHHHHHHHHHHCCCSCCGG----GE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCC------CCCCHHHHHHHHHHHHhccCCCCCCcc----cE
Confidence 35678765432 257889999988775421 123332 11124566555667777779 4454 45
Q ss_pred ecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh--
Q 010008 164 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-- 240 (520)
Q Consensus 164 ~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-- 240 (520)
.+++|+ +|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ + .+|++++++++++
T Consensus 113 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-~~d~~~l~~~l~~~~ 180 (425)
T 1vp4_A 113 IFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN--------AFRQYLA--NFVVVPLED-D-GMDLNVLERKLSEFD 180 (425)
T ss_dssp EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET-T-EECHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHHhhh
Confidence 567776 89999999999999999999988755421 2334454 566666664 3 3999999998875
Q ss_pred -----cCCcEE-EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccC
Q 010008 241 -----FRPKLI-IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTH 304 (520)
Q Consensus 241 -----~~pklI-i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~h 304 (520)
.++++| +++.++||+ ..+ +++|.++|+++|+++|+|++|.. +...+....++. ..+++++|+|
T Consensus 181 ~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~i~~~s~s 259 (425)
T 1vp4_A 181 KNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGA-LRYEGETVDPIFKIGGPERVVLLNTFS 259 (425)
T ss_dssp HTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTT-CBCSSCCCCCHHHHHCTTTEEEEEEST
T ss_pred hcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCcc-ccCCCCCCcCHHHhCCCCCEEEEeccc
Confidence 368988 467888886 444 67889999999999999999754 333222111221 2468899999
Q ss_pred cccC-CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHH
Q 010008 305 KSLR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLV 382 (520)
Q Consensus 305 K~l~-GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l~~~L~ 382 (520)
|++. |.|.|++++++ ++.+.+.....+...++ +....+++..+|+... ....++..+++.++++.+.+.|.
T Consensus 260 K~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 332 (425)
T 1vp4_A 260 KVLAPGLRIGMVAGSK------EFIRKIVQAKQSADLCS-PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALE 332 (425)
T ss_dssp TTTCGGGCEEEEECCH------HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceEEEeeCH------HHHHHHHHHhhhhcCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 66789999987 66666543222211222 3334444445665431 12236667778888999999998
Q ss_pred HC-----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHH
Q 010008 383 EL-----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF 457 (520)
Q Consensus 383 ~~-----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~ 457 (520)
+. |+.++.+. ...++++++.. +.+..++.+.|.+.||.+..+...+. ....++++||++... +++|+
T Consensus 333 ~~~~~~~g~~~~~~~-~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~f~~-~~~~~~~iRis~~~~-----~~e~i 404 (425)
T 1vp4_A 333 EYFSDIPGVKWVKSE-GGLFIWLTLPE-GFDTWEMFEYAKRKKVFYVPGRVFKV-YDEPSPSMRLSFCLP-----PDEKI 404 (425)
T ss_dssp HHSTTSTTCEECCCS-BSSEEEEECCT-TCCTTTTHHHHHHHTEECEEGGGGCT-TCCCCSEEEEECSSS-----CHHHH
T ss_pred HhCCCCCceEEecCC-ccEEEEEEcCC-CCCHHHHHHHHHHCCCEEECchhhcC-CCCCCCeEEEEeCCC-----CHHHH
Confidence 74 78876442 34567787753 45556666777677999854321111 112357899997643 48999
Q ss_pred HHHHHHHHHHHHH
Q 010008 458 VAIADFIHEGVEI 470 (520)
Q Consensus 458 ~~la~~i~~~l~~ 470 (520)
+++++.|.++++.
T Consensus 405 ~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 405 VEGIKRLREVVLE 417 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 115
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.92 E-value=2.4e-23 Score=216.43 Aligned_cols=324 Identities=14% Similarity=0.097 Sum_probs=211.8
Q ss_pred CCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-C
Q 010008 102 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L 180 (520)
Q Consensus 102 en~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l 180 (520)
...+++.+++++...+.+.|. +. .| +...+++ +.+++++|.+. .+...+|++|+..++.++ +
T Consensus 7 ~p~~~~~v~~a~~~~~~~~~~---~~----~g-~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~~~~l~~ 69 (394)
T 1o69_A 7 PPHMGGNELKYIEEVFKSNYI---AP----LG-EFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGV 69 (394)
T ss_dssp -----CCHHHHHHHHHHHTTT---SC----TT-HHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHcCCc---cC----CC-hHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCC
Confidence 345678888998888765431 10 12 2344444 67888888842 244566679999999999 9
Q ss_pred CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCCCCC
Q 010008 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPRDFD 258 (520)
Q Consensus 181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~~~d 258 (520)
+|||+|+++++.|.+... .+...|. +++.++++ +++.+|++++++++++. ++++|+++++ .+...|
T Consensus 70 ~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~~-~G~~~~ 137 (394)
T 1o69_A 70 KQDDIVLASSFTFIASVA--------PICYLKA--KPVFIDCD-ETYNIDVDLLKLAIKECEKKPKALILTHL-YGNAAK 137 (394)
T ss_dssp CTTCEEEEESSSCGGGTH--------HHHHTTC--EEEEECBC-TTSSBCHHHHHHHHHHCSSCCCEEEEECG-GGCCCC
T ss_pred CCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEEeC-CCCCcCHHHHHHHHhcccCCceEEEEECC-CCChhh
Confidence 999999999998866531 2334454 66777776 57889999999999764 6899888752 334789
Q ss_pred HHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCC
Q 010008 259 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG 338 (520)
Q Consensus 259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~ 338 (520)
+++|.++|+++|++||+|++|..|+.+.+.....+..+|+.++|.||.++|+++|+++++++ ++.+++......+
T Consensus 138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~-----~l~~~l~~~~~~~ 212 (394)
T 1o69_A 138 MDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARFYSTQA 212 (394)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBTC
T ss_pred HHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCH-----HHHHHHHHHHHhc
Confidence 99999999999999999999887876554322223357788888899998889999999642 5555543321111
Q ss_pred ------CC--------CCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC---CC-eeEEE
Q 010008 339 ------LQ--------GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS---DN-HLVLV 400 (520)
Q Consensus 339 ------~~--------g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt---~~-~~~~v 400 (520)
.+ +++.....++ +..+ ..+++..+++.++++++.+.|.+. +++..... .+ +++++
T Consensus 213 ~~~~~~~~~~~~g~~~~~~~~~aa~~----l~~l--~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i 285 (394)
T 1o69_A 213 RENCLHYEHLDYGYNYRLSNVLGAIG----VAQM--EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTA 285 (394)
T ss_dssp CCSSSSCCCSSCCCBCBCCHHHHHHH----HHHH--TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEE
T ss_pred cccCccccccccCcccCcCHHHHHHH----HHHH--HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEE
Confidence 11 1222222222 2221 235667788889999999999876 55544311 12 24566
Q ss_pred EecCC--------------------CCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCC--------------CEEEEccC
Q 010008 401 DLRPM--------------------GIDGARVEKILDMASITLNKNSVPGDK-SALVP--------------GGIRIGSP 445 (520)
Q Consensus 401 d~~~~--------------------g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~--------------~giRig~~ 445 (520)
.+... +++..++.+.|.+.||.++.++.|.+. ..+.. .++|+.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (394)
T 1o69_A 286 LINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSG 365 (394)
T ss_dssp EESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCC
T ss_pred EecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCC
Confidence 66421 235677888999999999765433111 01111 34555443
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHH
Q 010008 446 AMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 446 ~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
..++++|++++++.|++++..
T Consensus 366 ----~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 366 ----TAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHC-
T ss_pred ----CCCCHHHHHHHHHHHHHHHhc
Confidence 335699999999999887653
No 116
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.92 E-value=3e-23 Score=217.73 Aligned_cols=332 Identities=16% Similarity=0.218 Sum_probs=217.9
Q ss_pred eEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008 97 ELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 173 (520)
Q Consensus 97 ~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~ 173 (520)
+|..+++. .|+.+++++...+...+ |.. .+...+++ +.+++++|.+. .+...+|++|+.
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~~---------y~~~~~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~ 81 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQW---------LSNGGPLVREFE----ERVAGLAGVRH-----AVATCNATAGLQ 81 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHTC---------CSSSCHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhcCC---------cccCCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHH
Confidence 45556654 46789999888775421 222 24445555 67888888752 244456669999
Q ss_pred HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008 174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253 (520)
Q Consensus 174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 253 (520)
+++.++. +||+|+++++.|.++.. .+...|. +++.++++++++.+|+++|++.+++ ++++|+++.+ .
T Consensus 82 ~~l~~l~-~gd~Vlv~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-t 148 (424)
T 2po3_A 82 LLAHAAG-LTGEVIMPSMTFAATPH--------ALRWIGL--TPVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVHL-W 148 (424)
T ss_dssp HHHHHHT-CCSEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEECG-G
T ss_pred HHHHHcC-CCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEECC-C
Confidence 9999885 89999999998765431 2334555 6777778765788999999999987 8999988642 3
Q ss_pred CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHh
Q 010008 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESA 330 (520)
Q Consensus 254 p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~ 330 (520)
+...++++|.++|+++|++||+|++|..|+...+. ++. ..|++++|+| |+++|+++|+++++++ ++.++
T Consensus 149 G~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~-----~l~~~ 220 (424)
T 2po3_A 149 GRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLGDAEVFSFHATKAVNAFEGGAVVTDDA-----DLAAR 220 (424)
T ss_dssp GCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHH
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECccccCCeECCe---ecccccCEEEEeCCCCCCccCCCCeEEEeCCH-----HHHHH
Confidence 34789999999999999999999998877764332 122 4689999988 8898899999999842 55555
Q ss_pred hcccCCCCC--------CCCC-hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEec-C-CC-CC-e
Q 010008 331 INNAVFPGL--------QGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS-G-GS-DN-H 396 (520)
Q Consensus 331 i~~~~~p~~--------~g~p-~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~-~-gt-~~-~ 396 (520)
+......+. .|.+ .+..+++ ++++... ..++++.++..++++++.+.|.+. |+.+.. + +. .+ +
T Consensus 221 l~~~~~~~~~~~~~~~~~g~~~~~~~~~a-a~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 297 (424)
T 2po3_A 221 IRALHNFGFDLPGGSPAGGTNAKMSEAAA-AMGLTSL--DAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQ 297 (424)
T ss_dssp HHHHHBTTTTCTTCCTTCCCBCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCC
T ss_pred HHHHHhcCccccccccccCcCCCcCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccE
Confidence 433211111 1111 1112221 1223221 245667788888888888888774 888764 2 22 12 3
Q ss_pred eEEEEecC--CCCCHHHHHHHHhhcCeEEcCCCCCC-CC-CCCC--------------CCEEEEccCCccccCCCHHHHH
Q 010008 397 LVLVDLRP--MGIDGARVEKILDMASITLNKNSVPG-DK-SALV--------------PGGIRIGSPAMTTRGFSEKEFV 458 (520)
Q Consensus 397 ~~~vd~~~--~g~~~~~~~~~L~~~gI~v~~~~~Pg-~~-~~~~--------------~~giRig~~~~tt~g~~~~d~~ 458 (520)
++.+++.. .+++..++.+.|.+.||.+...+.|. +. ..+. ...||+++... ++++|++
T Consensus 298 ~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~----~t~e~i~ 373 (424)
T 2po3_A 298 YVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTA----IGDDDIR 373 (424)
T ss_dssp CEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTT----CCHHHHH
T ss_pred EEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCC----CCHHHHH
Confidence 44455532 14577888889999999997532211 00 0010 11277875433 5689999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010008 459 AIADFIHEGVEITLEA 474 (520)
Q Consensus 459 ~la~~i~~~l~~~~~~ 474 (520)
++++.|.++++...+.
T Consensus 374 ~~~~~L~~~~~~~~~~ 389 (424)
T 2po3_A 374 RVADLLRLCATRGREL 389 (424)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHH
Confidence 9999999998765444
No 117
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.91 E-value=5.3e-23 Score=210.94 Aligned_cols=309 Identities=15% Similarity=0.108 Sum_probs=204.1
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 170 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~ 170 (520)
..|+|..++|+ +|+.| ++ . ...+||.. . ..+++ +.+++++|++++ +|.+++|+ +
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a~----~--~~~~Y~~~------~-~~~lr----~~la~~~~~~~~----~v~~~~G~~~ 86 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--TQ----Q--TLNRYPEC------Q-PKAVI----ENYAQYAGVKPE----QVLVSRGADE 86 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--CC----C--CTTSCCCS------S-CHHHH----HHHHHHHTSCGG----GEEEESHHHH
T ss_pred ceEEeeCCCCCCCCCHhH--hh----h--hhccCCCc------c-HHHHH----HHHHHHhCCChH----HEEEcCCHHH
Confidence 45888888885 34555 21 1 11234431 1 23333 677888899875 45667886 8
Q ss_pred HHHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 171 ANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 171 A~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
++.+++.++++|| |+|++++|.|.++.. .+...|. +++.++++ +++.+|++++++.++ ++|+|+++
T Consensus 87 ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~--~~~~v~l~ 153 (356)
T 1fg7_A 87 GIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGV--ECRTVPTL-DNWQLDLQGISDKLD--GVKVVYVC 153 (356)
T ss_dssp HHHHHHHHHCCTTTCEEEECSSSCTHHHH--------HHHHHTC--EEEECCCC-TTSCCCHHHHHTSCT--TEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEeeCC-CCCCCCHHHHHHHhc--CCCEEEEe
Confidence 9999999999999 999999998765421 2233454 66677776 457899999999886 78999999
Q ss_pred CCCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc--CCCCceEEEeeCCC
Q 010008 250 ASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP 321 (520)
Q Consensus 250 ~s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l--~GprgG~I~~~~~~ 321 (520)
.++||+ ..+.+++.++++. +|+++|+|++|....-....... +. ..++++.|+||++ +|+|.|++++++
T Consensus 154 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-- 230 (356)
T 1fg7_A 154 SPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGW-LAEYPHLAILRTLSKAFALAGLRCGFTLANE-- 230 (356)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGG-TTTCTTEEEEEESSSTTCCGGGCCEEEEECH--
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCCcHHHH-HhhCCCEEEEecchHhhcCchhhhEEEEeCH--
Confidence 999986 6666555554443 89999999997533211111110 11 3568899999987 678889999977
Q ss_pred cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEecCCCCCeeEE
Q 010008 322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGSDNHLVL 399 (520)
Q Consensus 322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~~gt~~~~~~ 399 (520)
++.+.+.....+. + ++....++...+|+......+++..+++.++++.+.+.|.+.| +.+. +. ...+++
T Consensus 231 ----~~~~~l~~~~~~~--~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~-~~~~~~ 301 (356)
T 1fg7_A 231 ----EVINLLMKVIAPY--P-LSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVF-DS-ETNYIL 301 (356)
T ss_dssp ----HHHHHHHHHSCSS--C-SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-CC-SSSEEE
T ss_pred ----HHHHHHHHhcCCC--C-CCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEC-CC-CCeEEE
Confidence 6777665543322 2 3333333333344331101156677888889999999998865 3333 32 345667
Q ss_pred EEecCCCCCHHHHHHHHhhcCeEEcC-CCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 400 VDLRPMGIDGARVEKILDMASITLNK-NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 400 vd~~~~g~~~~~~~~~L~~~gI~v~~-~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
+++. +..++.+.|.++||.+.. +..+| .++++||+.. +++|++++++.|++
T Consensus 302 ~~~~----~~~~l~~~L~~~gI~v~~~g~~~~-----~~~~iRis~~-------~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 302 ARFK----ASSAVFKSLWDQGIILRDQNKQPS-----LSGCLRITVG-------TREESQRVIDALRA 353 (356)
T ss_dssp EEET----THHHHHHHHHHTTEECEECTTSTT-----CTTEEEEECC-------CHHHHHHHHHHHHT
T ss_pred EECC----CHHHHHHHHHHCCEEEEECCCCCC-----CCCeEEEEeC-------CHHHHHHHHHHHHh
Confidence 7774 567788888999999964 32221 2468999864 37899999888764
No 118
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.91 E-value=2.7e-23 Score=219.11 Aligned_cols=345 Identities=12% Similarity=0.008 Sum_probs=213.5
Q ss_pred hccc-eEecCCCCChHHHHH----HHhhhhhc-------c----CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--
Q 010008 93 FKSL-ELIASENFTSRAVME----AVGSCLTN-------K----YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-- 154 (520)
Q Consensus 93 ~~~i-~Liasen~~~~~V~e----a~~s~l~~-------~----y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~-- 154 (520)
.+.| +|..+.+..++.+.+ ++...+.+ . +..+|+. .....++++...+++.+.+|+
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~l~~~~g~~~ 104 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSN------PQGDSAFIDALVGFFNRHYDWNL 104 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCC------TTCCHHHHHHHHHHHHHHHCCCC
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCC------CCCCHHHHHHHHHHHHhhcCCCC
Confidence 4668 887766555555444 44444433 1 0113332 222346666666777777765
Q ss_pred CCCCCceeeecCChH-HHHHHHHHhhCCCCC--------------EEEEc-CCCCCccccccccccccccccccceEEEE
Q 010008 155 DENKWGVNVQPLSGS-PANFEVYTAILKPHD--------------RIMGL-DLPHGGHLSHGFMTPKRRVSGTSIYFESM 218 (520)
Q Consensus 155 ~~~~~~~~V~~~sGs-~A~~~~l~all~pGD--------------~Vl~~-~~~~~ghls~g~~~~~~~v~~~g~~~~~v 218 (520)
+++ +|.+++|+ +|+.+++.++++||| +|+++ +|.|.++....... . .+.+....++
T Consensus 105 ~~~----~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~--~--~~~~~~~~~~ 176 (444)
T 3if2_A 105 TSE----NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG--Q--HFAAVLPHID 176 (444)
T ss_dssp CGG----GEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS--C--CEEECCCEEE
T ss_pred CHH----HEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccccc--c--hhhccCceEE
Confidence 444 44456665 999999999999998 88876 77776653211000 0 1222334666
Q ss_pred EcccCCCC----CCCCHHHHHHH---hhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccc--
Q 010008 219 PYRLDEST----GLVDYDMLEKT---AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLV-- 284 (520)
Q Consensus 219 ~~~~d~~~----~~iD~d~le~~---i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli-- 284 (520)
++++++++ +.+|+++|+++ +++ ++++|+++.++||+ ..+ +++|.++|+++|++||+|++|.....
T Consensus 177 ~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~ 255 (444)
T 3if2_A 177 EVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI 255 (444)
T ss_dssp EEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC
T ss_pred ecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccc
Confidence 66666422 37999999987 555 78999998888886 667 88889999999999999999753211
Q ss_pred -cccccCCCCCcccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch
Q 010008 285 -AASVVADPFKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE 362 (520)
Q Consensus 285 -~~~~~~~p~~~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~ 362 (520)
..+..+ .....+++++|+||++ +|.|.|+++.++ ++.+.+.........+++...+. +.+..++. ..
T Consensus 256 ~~~~~~~-~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~-a~~~~l~~---~~ 324 (444)
T 3if2_A 256 IYSDAHL-NWDNNTILCFSLSKIGLPGMRTGIIVADA------KVIEAVSAMNAVVNLAPTRFGAA-IATPLVAN---DR 324 (444)
T ss_dssp BCSCCCC-CCCTTEEEEEESTTTTCGGGCCEEEECCH------HHHHHHHHHHHHHHSSCCCHHHH-HHHHHHHT---SH
T ss_pred ccccccc-cCCCCEEEEechhhccCCCCceEEEEECH------HHHHHHHHHHHhccCCCChHHHH-HHHHHHHc---Cc
Confidence 111111 1124678999999974 577889999877 66665543221111222222222 22223332 22
Q ss_pred h----HH-HHHHHHHHHHHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCC--CC
Q 010008 363 F----KV-YQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP--GD 431 (520)
Q Consensus 363 ~----~~-~~~~i~~na~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~P--g~ 431 (520)
+ .+ ..+.+.++++.+.+.|.+. ++.+..+. ...++|+++...+++..++.+.|.+.||.+..+... +.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~ 403 (444)
T 3if2_A 325 IKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE-GAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGV 403 (444)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC-BSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC-ccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCC
Confidence 2 12 3455666777777777652 55655432 345677788654678888888999999999654321 11
Q ss_pred CC---CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 432 KS---ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 432 ~~---~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
.. +...++|||+++. +++++++.++.|.++++.
T Consensus 404 ~~~~~~~~~~~iRis~~~------~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 404 DVSDYQHAHECIRMSIAA------DEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp CCTTCSGGGSEEEEESSS------CHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCeEEEEEeC------CHHHHHHHHHHHHHHHHH
Confidence 10 1123689999763 489999999999988864
No 119
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.91 E-value=1.2e-22 Score=207.65 Aligned_cols=316 Identities=15% Similarity=0.127 Sum_probs=215.2
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-H
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S 169 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s 169 (520)
++.|+|..++|+ +++.|.+++...+.+. .+||.. ...+++ +++++++|++++ +|.+++| +
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~-------~~~~l~----~~la~~~~~~~~----~i~~~~g~t 88 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKNL--GVYPDV-------NYRRLN----KSIENYLKLKDI----GIVLGNGAS 88 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHGG--GSCCCT-------TCHHHH----HHHHHHHTCCSC----EEEEESSHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHh--cCCCCc-------cHHHHH----HHHHHHhCCCcc----eEEEcCCHH
Confidence 356888888775 5799999998877652 244431 123444 678888998875 3444555 4
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
+|+.+++.++ |+|++.++.|.++.. .+...|. +++.+++++ ++.+|++++++++++ +++|+++
T Consensus 89 ~al~~~~~~~----d~vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~-~~~~~~~~l~~~l~~--~~~v~i~ 151 (361)
T 3ftb_A 89 EIIELSISLF----EKILIIVPSYAEYEI--------NAKKHGV--SVVFSYLDE-NMCIDYEDIISKIDD--VDSVIIG 151 (361)
T ss_dssp HHHHHHHTTC----SEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCT-TSCCCHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHHHc----CcEEEecCChHHHHH--------HHHHcCC--eEEEeecCc-ccCCCHHHHHHhccC--CCEEEEe
Confidence 8999888887 999999987765321 2333454 666777763 457888999999976 9999999
Q ss_pred CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEE-
Q 010008 250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF- 316 (520)
Q Consensus 250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~- 316 (520)
.++||+ ..+ +++|+++|+++|+++++|++|.. +... ....++. ...++++|+||++ +|.|.|+++
T Consensus 152 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~ 229 (361)
T 3ftb_A 152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIE-FTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGIT 229 (361)
T ss_dssp TTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGG-GTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchh-hcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEe
Confidence 888886 444 67788888899999999999753 3322 1111111 2347789999987 567889988
Q ss_pred eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCE-EecCCCC
Q 010008 317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK-LVSGGSD 394 (520)
Q Consensus 317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~-v~~~gt~ 394 (520)
.++ ++.+.+.....+ .+++....+++..+++. ....++..+++.++++.+.+.|.+. |+. +..+ .
T Consensus 230 ~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~ 296 (361)
T 3ftb_A 230 NNK------EIAAKIKAKQNP---WNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP--H 296 (361)
T ss_dssp SCH------HHHHHHHTTSCT---TCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC--S
T ss_pred CCH------HHHHHHHhhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC--C
Confidence 554 677776654332 23444455554444542 1234677788889999999999885 777 5543 2
Q ss_pred CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
..++++++.. .+..++.+.|.+.||.+..+... +...++++||+.. +++|++++.+.|+++.+
T Consensus 297 ~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~---~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 297 ANFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNF---IGLDDSFVRFAIK-------DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp SSEEEEEESS--SCHHHHHHHHHTTTEECEECTTS---TTCCTTEEEEECC-------CHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccC---CCCCCCEEEEEcC-------CHHHHHHHHHHHHHHHh
Confidence 3456777753 56788888888889998543211 2234678999864 46889999998887654
No 120
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.91 E-value=4.9e-24 Score=217.98 Aligned_cols=330 Identities=12% Similarity=0.056 Sum_probs=207.7
Q ss_pred hhccceEecCCCCC--hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 92 QFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 92 ~~~~i~Liasen~~--~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
+...+.+..++|+. +|.|++++...+... .|+..+..++++ +++++++|.+. .+.+++|+
T Consensus 12 ~~~~~~~~~~~~~~g~~p~v~~ai~~~~~~~---------~~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~g~ 73 (359)
T 3pj0_A 12 KTPYKLGGNGPRNVGVLTEALQNIDDNLESD---------IYGNGAVIEDFE----TKIAKILGKQS-----AVFFPSGT 73 (359)
T ss_dssp TCSEESSSSSCCBHHHHHHHTTTSCTTCBCC---------BTTBSHHHHHHH----HHHHHHHTCSE-----EEEESCHH
T ss_pred hcchhhcCCCccccCCCHHHHHHHHhhcccC---------cccCCHHHHHHH----HHHHHHhCCCc-----EEEeCCHH
Confidence 34567777889986 899999987643211 133334455555 67889999875 24558999
Q ss_pred HHHHHHHHhhCCCCCE--EEEcCCCCCcccccccccccccc-ccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008 170 PANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 170 ~A~~~~l~all~pGD~--Vl~~~~~~~ghls~g~~~~~~~v-~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI 246 (520)
+|+..++.+++++||+ |++.++.|....... .+ ...|. +++.++. +++.+|+++++++ .+ ++++|
T Consensus 74 ~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~------~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~-~~-~~~~v 141 (359)
T 3pj0_A 74 MAQQIALRIWADRKENRRVAYHPLSHLEIHEQD------GLKELQQI--TPLLLGT--ANQLLTIDDIKSL-RE-PVSSV 141 (359)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT------HHHHHHCC--EEEECSC--TTSCCCHHHHHTC-SS-CCSEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccceeeehhcc------hHHHhcCc--eEEecCC--cCCCcCHHHHHhc-cC-CceEE
Confidence 9999999999999997 444433322111000 11 22344 6666655 4678999999988 54 89999
Q ss_pred EEcCCCCCC---CCCHHH---HHHHHHHhCCEEEEechhhcccc-cccccCCCC-CcccEEEeccCcccCCCCceEEEee
Q 010008 247 IAGASAYPR---DFDYPR---MRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFK 318 (520)
Q Consensus 247 i~~~s~~p~---~~d~~~---i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~ 318 (520)
+++.++||+ ..+.++ |+++|+++|++||+|++|..+.. ..+....++ .++|+++.|+||++.||.||+++.+
T Consensus 142 ~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~ 221 (359)
T 3pj0_A 142 LIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGN 221 (359)
T ss_dssp EEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEEC
T ss_pred EEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECC
Confidence 998776542 556554 59999999999999998765432 111111111 2579999999999988877888887
Q ss_pred CCCcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCC
Q 010008 319 KDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDN 395 (520)
Q Consensus 319 ~~~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~ 395 (520)
+ ++.+++... .+.+.....+....+++ .+++... +..++..++++.+.+.|.+. |+++.......
T Consensus 222 ~------~l~~~~~~~~~~~~~~~~~~~~~~~a~~-~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 289 (359)
T 3pj0_A 222 D------DFVQEAKIWKRRYGGDLISLYPYILSAD-YYFEKRI-----GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVS 289 (359)
T ss_dssp H------HHHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHHG-----GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSS
T ss_pred H------HHHHHHHHHHHHhCCCcchhHHHHHHHH-HHHHHHH-----HHhHHHHHHHHHHHHHHhhCCCceeeccCCcc
Confidence 7 676666431 12211112222233333 3454432 33456678889999999885 88885322345
Q ss_pred eeEEEEecCCC-CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 396 HLVLVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 396 ~~~~vd~~~~g-~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
+++++++...+ .+..++.+.|.++||.+..+..++. ...+.+|+....-. ...+.+++++..+.|.++
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~---~~~~~~r~~i~~~~-~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 290 NMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS---ADVCAFEVSVGDAF-AEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp SEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE---TTEEEEEEECCTTG-GGSCHHHHHHHHHHHHHH
T ss_pred eEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC---CCceEEEEEecCcc-ccCCHHHHHHHHHHHHhc
Confidence 66777775321 2346788889999999965432221 12457888543111 124577888777777654
No 121
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.91 E-value=2.1e-23 Score=219.09 Aligned_cols=337 Identities=14% Similarity=0.094 Sum_probs=219.4
Q ss_pred hccceEecCCC-C--ChHHH--HHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CCCCCCCceeeecC
Q 010008 93 FKSLELIASEN-F--TSRAV--MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPL 166 (520)
Q Consensus 93 ~~~i~Liasen-~--~~~~V--~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~~~~~~~~~V~~~ 166 (520)
.+.|+|..+++ . .++.+ ++++...+......+|+.. .| ..++++...+++.+.+ +++++++ ..|.++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~---~g---~~~lr~~ia~~~~~~~~~~~~~~~-~~i~~t 119 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPP---QG---IEELRDLWQQKMLRDNPELSIDNM-SRPIVT 119 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCT---TC---CHHHHHHHHHHHHHHCTTCCGGGB-CCCEEE
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCC---CC---CHHHHHHHHHHHhccCcccCCCcc-ceEEEc
Confidence 45688887776 3 35656 7777665543112234321 11 2345543334444332 6666531 014556
Q ss_pred ChH-HHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccc-ccceEEEEEcccCCCCCCCCHHHHHHHhhhc--C
Q 010008 167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDESTGLVDYDMLEKTAILF--R 242 (520)
Q Consensus 167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~-~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~ 242 (520)
+|+ +|+..++.++++|||+|++.+|.|.++.. .+.. .|. +++.++++++++.+|++++++++++. +
T Consensus 120 ~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 189 (430)
T 2x5f_A 120 NALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL--------VFNTRNGA--NLQTYPIFDKDGHYTTDSLVEALQSYNKD 189 (430)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHTTTTCC--EEEEECCBCTTSCBCSHHHHHHHHHCCSS
T ss_pred CCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH--------HHHHhcCC--eEEEEeccCccCCcCHHHHHHHHHhcCCC
Confidence 665 99999999999999999999998866431 2233 454 66677776434679999999998763 6
Q ss_pred CcEEEEcCCCCCC--CCC---HHHHHHHHHH-----hCCEEEEechhhcccccccc-cCC---CC---Ccc---cEEEec
Q 010008 243 PKLIIAGASAYPR--DFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASV-VAD---PF---KYC---DVVTTT 302 (520)
Q Consensus 243 pklIi~~~s~~p~--~~d---~~~i~~ia~~-----~g~~li~D~Ah~~gli~~~~-~~~---p~---~~a---Div~~S 302 (520)
+++|+++.|+||+ ..+ +++|.++|++ +|+++|+|++|.. +...+. ... .+ ... +++++|
T Consensus 190 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG-LFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT-CBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc-ccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 7888888889886 566 8899999999 9999999999653 333322 111 11 123 577899
Q ss_pred cCccc--CCCCceEEEe---eCCCcchhhHHHhhcccCCC---CCCCCChHHHHHHHHHHHH-Hhc-CchhHHHHHHHHH
Q 010008 303 THKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLK-HAQ-SPEFKVYQNKVVS 372 (520)
Q Consensus 303 ~hK~l--~GprgG~I~~---~~~~~~~~~l~~~i~~~~~p---~~~g~p~~~~iaala~al~-~~~-~~~~~~~~~~i~~ 372 (520)
+||++ +|.|.|++++ ++ ++.+.+...... ....+++....+++..+|+ ... ....+...+++.+
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 342 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQ------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKE 342 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCH------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCH------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 99987 5778899999 66 566655432211 0122334444444445565 310 0112336778888
Q ss_pred HHHHHHHHHH----HCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCc
Q 010008 373 NCRALASRLV----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAM 447 (520)
Q Consensus 373 na~~l~~~L~----~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~ 447 (520)
+++.+.+.|. +.|+.+..+ ..+.++++++. +.+..++.+.|.+ +||.+. || .++++||++..
T Consensus 343 ~~~~l~~~L~~~~~~~g~~~~~~-~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~----~g-----~~~~iRis~~~- 409 (430)
T 2x5f_A 343 RYEVTKEVVYADQYHSHWQAYDF-NSGYFMAIKVH--DVDPEALRKHLIDKYSIGVI----AL-----NATDIRIAFSC- 409 (430)
T ss_dssp HHHHHHHHHTCGGGTTTEEECCC-CBSSEEEEEES--SSCHHHHHHHHHHHHCEECE----EC-----SSSEEEEEGGG-
T ss_pred HHHHHHHHHHhhCCCCCceeeCC-CceEEEEeCCC--CCCHHHHHHHHHHhCCEEEe----cC-----CCCeEEEEEec-
Confidence 8999999998 567777654 23455777875 5677777777776 999984 44 35689999763
Q ss_pred cccCCCHHHHHHHHHHHHHHHHH
Q 010008 448 TTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 448 tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
.++++++++++.|.++++.
T Consensus 410 ----~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 410 ----VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp ----SCGGGHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHh
Confidence 2478999999999888753
No 122
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.91 E-value=3.1e-23 Score=211.22 Aligned_cols=323 Identities=13% Similarity=0.108 Sum_probs=207.7
Q ss_pred cceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008 95 SLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 173 (520)
Q Consensus 95 ~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~ 173 (520)
.|+|..+. ...++.|++++...+.. |..+ |+..+..+ ..++++++++| ...+ .+.+++|++|+.
T Consensus 9 ~id~~~~~~~~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~----~l~~~la~~~g-~~~~---v~~~~~gt~a~~ 73 (356)
T 1v72_A 9 ALGFSSDNIAGASPEVAQALVKHSSG-QAGP------YGTDELTA----QVKRKFCEIFE-RDVE---VFLVPTGTAANA 73 (356)
T ss_dssp CCBCSCGGGCCCCHHHHHHHHHTTSS-CCCS------TTCSHHHH----HHHHHHHHHHT-SCCE---EEEESCHHHHHH
T ss_pred eEeeccCCccCCCHHHHHHHHhhccC-cccc------cccchHHH----HHHHHHHHHhC-CCCc---EEEeCCccHHHH
Confidence 45555432 24689999999876532 2222 33233333 34478899999 3211 244577789999
Q ss_pred HHHHhhCCCCCEEEEcCCCCCccccccccccccccccc--cceEEEEEcccCCCCCCCCHHHHHH-Hhhhc------CCc
Q 010008 174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEK-TAILF------RPK 244 (520)
Q Consensus 174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~--g~~~~~v~~~~d~~~~~iD~d~le~-~i~~~------~pk 244 (520)
+++.++++|||+|++.++.|++.+..+ .+... |. +++.++.+ ++.+|+++|++ ++++. +++
T Consensus 74 ~al~~~~~~gd~vi~~~~~~~~~~~~~------~~~~~~~g~--~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~ 143 (356)
T 1v72_A 74 LCLSAMTPPWGNIYCHPASHINNDECG------APEFFSNGA--KLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPA 143 (356)
T ss_dssp HHHHTSCCTTEEEEECTTSHHHHSSTT------HHHHHTTSC--EEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred HHHHHhcCCCCEEEEcCccchhhhhch------HHHHHhCCc--EEEEecCC--CCeEcHHHHHHHhhhcchhhccCCce
Confidence 999999999999999988665432210 02233 54 66666654 47899999999 88752 578
Q ss_pred EEEEcCCCCCC-C---CCHHHHHHHHHHhCCEEEEechhhcccc-cccccCCCC---CcccEEEeccCcccCCCCc-eEE
Q 010008 245 LIIAGASAYPR-D---FDYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF---KYCDVVTTTTHKSLRGPRG-GMI 315 (520)
Q Consensus 245 lIi~~~s~~p~-~---~d~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~---~~aDiv~~S~hK~l~Gprg-G~I 315 (520)
+|+++++++.+ . .++++|+++|+++|++||+|++|..+.. ..+..+..+ .++|++++|+||+ .+|.| |++
T Consensus 144 ~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~ 222 (356)
T 1v72_A 144 CVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIV 222 (356)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEE
T ss_pred EEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEE
Confidence 99888766543 3 3578999999999999999999764322 222222222 2678999999999 55666 688
Q ss_pred EeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCC
Q 010008 316 FFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS 393 (520)
Q Consensus 316 ~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt 393 (520)
++++ ++.+++.... ..+....+. ..++ ..+++.+....+.+..+++.++++++.+.|.+ .|+++..+ .
T Consensus 223 ~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~ 292 (356)
T 1v72_A 223 LFNT------SLATEMSYRRKRAGHLSSKM--RFLS-AQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG-T 292 (356)
T ss_dssp ESSG------GGHHHHHHHHHHTTCCCSST--HHHH-HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC-C
T ss_pred EECH------HHHhhHHHHhhccCchhhhH--HHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccC-C
Confidence 8876 4544443211 111111111 1222 22344444334566778888899999999988 58887654 2
Q ss_pred CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
..+++++++. .++.+.|.+.||.+..+ . +.++.+|++++.. .+++|++++++.|+++++.
T Consensus 293 ~~~~~~~~~~------~~~~~~l~~~gi~v~~g----~---~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 293 EANILFCRLD------SAMIDALLKAGFGFYHD----R---WGPNVVRFVTSFA----TTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CSSEEEEEEC------HHHHHHHHHTTCBCBCS----S---SSTTEEEEECCTT----CCHHHHHHHHHHHHHTC--
T ss_pred CccEEEEEcC------HHHHHHHHhcCeEEecc----c---cCCCeEEEEecCC----CCHHHHHHHHHHHHHHHHh
Confidence 3456677663 35677788889998532 2 1257899986543 3589999999999887653
No 123
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.91 E-value=5.2e-23 Score=221.57 Aligned_cols=312 Identities=13% Similarity=0.074 Sum_probs=205.8
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC--------------CCCEEEEcCCCCCcccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--------------PHDRIMGLDLPHGGHLS 198 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--------------pGD~Vl~~~~~~~ghls 198 (520)
..+...++|+.+.+|+++++|.+.+.- ..+.+.+|++||..++.++.+ |++.|++++..|.+..
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~- 206 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK- 206 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH-
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCCC-ceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH-
Confidence 346678999999999999999984211 234456777999988877654 6788998887664331
Q ss_pred ccccccccccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhcC-----CcEEEEcCCCCCC--CCCHHHHHHHHHHhC
Q 010008 199 HGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAYPR--DFDYPRMRQIADAVG 270 (520)
Q Consensus 199 ~g~~~~~~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~~-----pklIi~~~s~~p~--~~d~~~i~~ia~~~g 270 (520)
+.+...|... +++.++++ +++.+|+++|++++++.+ |++|+++.+++++ ..|+++|+++|+++|
T Consensus 207 -------~~~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~ 278 (511)
T 3vp6_A 207 -------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 278 (511)
T ss_dssp -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred -------HHHHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcC
Confidence 2334445422 45555666 468999999999997632 8888888766654 789999999999999
Q ss_pred CEEEEechhhcccccccccCCC---CCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCC---------
Q 010008 271 ALLMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFP--------- 337 (520)
Q Consensus 271 ~~li~D~Ah~~gli~~~~~~~p---~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p--------- 337 (520)
+++++|+||..|......+... +.++|++++++||||.+|.+ |+++++++ ++.+.......+
T Consensus 279 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~-----~~~~~~~~~~~~yl~~~~~~~ 353 (511)
T 3vp6_A 279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK-----GILQGCNQMHASYLFQQDKHY 353 (511)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST-----THHHHHHCCCCTTTCCSSCSS
T ss_pred CEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH-----HHHHHHhccCCccccCccccc
Confidence 9999999988776644322211 23689999999999988876 88888774 333322110000
Q ss_pred ---------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecC-CCCCeeEEEEecCCC
Q 010008 338 ---------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG-GSDNHLVLVDLRPMG 406 (520)
Q Consensus 338 ---------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~-gt~~~~~~vd~~~~g 406 (520)
..+++... ...++..+++.....++++..++..++++++.+.|++ .|++++.+ .....++.+.+.+.+
T Consensus 354 ~~~~~~~~~~~~~~r~~-~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~ 432 (511)
T 3vp6_A 354 DVSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQS 432 (511)
T ss_dssp CGGGCCGGGSSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGG
T ss_pred ccccCccCCCCCCCCch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcc
Confidence 11112111 2334455666555567788999999999999999988 49998862 112334444444433
Q ss_pred CC---------------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHHHHHHH
Q 010008 407 ID---------------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 407 ~~---------------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
++ ..++.+.|.+.|+.+-. ..|.. ...+.+|+++ ... .+++|++++++.|.++-
T Consensus 433 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~---~~~~~lRi~~~~~~----~t~~di~~ll~~i~~~~ 502 (511)
T 3vp6_A 433 LRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQG---DKANFFRMVISNPA----ATQSDIDFLIEEIERLG 502 (511)
T ss_dssp GSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEET---TEEEEEEECCCCTT----CCHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeC---CceEEEEEEecCCC----CCHHHHHHHHHHHHHHH
Confidence 21 12467777777754321 11211 1124699987 333 34899999998887653
No 124
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.91 E-value=4.3e-23 Score=212.39 Aligned_cols=287 Identities=14% Similarity=0.136 Sum_probs=194.3
Q ss_pred HHHHHHc-CCCCCCCceeeecCCh-HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC
Q 010008 146 KRALAAF-NLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 223 (520)
Q Consensus 146 ~~~~~lf-g~~~~~~~~~V~~~sG-s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d 223 (520)
+.+++++ +++++ +|.+++| ++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++
T Consensus 70 ~~la~~~~~~~~~----~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~ 135 (375)
T 3op7_A 70 KSVSQLYTGVKPE----QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD--------IPKSLGA--EVDLWQIE 135 (375)
T ss_dssp HHHHTTSSSCCGG----GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH--------HHHHTTC--EEEEEEEE
T ss_pred HHHHHHhccCChh----hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEecc
Confidence 5566666 46665 3444555 599999999999999999999998765431 2334455 55566665
Q ss_pred C-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--c
Q 010008 224 E-STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y 295 (520)
Q Consensus 224 ~-~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~ 295 (520)
+ +++.+|++++++++++ ++++|+++.++||+ ..| +++|.++|+++|+++|+|++|.. +...+ .+.... .
T Consensus 136 ~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~-~~~~~-~~~~~~~~~ 212 (375)
T 3op7_A 136 EENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS-FSELD-VPSIIEVYD 212 (375)
T ss_dssp GGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC-CSSSC-CCCHHHHCT
T ss_pred ccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-ccccC-CCchhhhcC
Confidence 3 3456899999999987 89999999888886 678 99999999999999999999653 33221 111111 3
Q ss_pred ccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008 296 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373 (520)
Q Consensus 296 aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n 373 (520)
.++++.|+||++ +|.|+|++++++ ++.+.+.........+++..... +...+++.. ....+...+.+.++
T Consensus 213 ~~i~~~s~sK~~~~~G~r~G~v~~~~------~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~~~~~~~~~~ 284 (375)
T 3op7_A 213 KGIAVNSLSKTYSLPGIRIGWVAANH------QVTDILRDYRDYTMICAGVFDDL-VAQLALAHY-QEILERNRHILEEN 284 (375)
T ss_dssp TEEEEEESSSSSSCGGGCCEEEECCH------HHHHHHTTTGGGTTSCCCHHHHH-HHHHHHHTH-HHHHHHHHHHHHHH
T ss_pred CEEEEeEChhhcCCcccceEEEEeCH------HHHHHHHHHHhhhccCCCcHHHH-HHHHHHhcc-HHHHHHHHHHHHHH
Confidence 458899999997 577889999976 77777765433333333333333 333355532 12335666777888
Q ss_pred HHHHHHHHHH-CCCEEecCCCCCeeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008 374 CRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG 451 (520)
Q Consensus 374 a~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g 451 (520)
++.+.+.|.+ .++.++.+. ...+.++.+. .+.+..++.+. |+++||.+..+..++ .++++||++.
T Consensus 285 ~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~~g~~~~-----~~~~iRi~~~------ 351 (375)
T 3op7_A 285 LAILDQWIEEEPLVSYIRPA-VVSTSFVKIA-VDMPMEDFCLQLLQEHGVLLVPGNRFE-----RDGYVRLGFA------ 351 (375)
T ss_dssp HHHHHHHHHHCTTEEECCCS-SSSCEEEEEC-CSSCHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEECCC------
T ss_pred HHHHHHHHhhCCCceEecCC-CeEEEeEEcC-CCCCHHHHHHHHHHhCCEEEeChhhhC-----CCCeEEEEec------
Confidence 9999999988 477766542 2344566664 34566665555 478999985432221 2679999854
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 010008 452 FSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 452 ~~~~d~~~la~~i~~~l~~ 470 (520)
..++++++..+.|.++++.
T Consensus 352 ~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 352 CEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp SCHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 2358899999998887753
No 125
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=216.61 Aligned_cols=330 Identities=12% Similarity=0.074 Sum_probs=221.8
Q ss_pred cCCCCChHHHHHHHhhhhhccCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeec-C-ChHHHHHHHH
Q 010008 100 ASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-L-SGSPANFEVY 176 (520)
Q Consensus 100 asen~~~~~V~ea~~s~l~~~y~~G~p~-~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~-~-sGs~A~~~~l 176 (520)
++..++|+.|+++|...+.+.+..|... .....+.++.+.+| .+++.+++++|++.++ +|.. + +||+++.+++
T Consensus 19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~-~ar~~la~ll~~~~~~---evif~t~~~T~a~n~a~ 94 (377)
T 3e77_A 19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIIN-NTENLVRELLAVPDNY---KVIFLQGGGCGQFSAVP 94 (377)
T ss_dssp ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHH-HHHHHHHHHHTCCTTE---EEEEESSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCC---eEEEEcCchHHHHHHHH
Confidence 3556789999999999988765432211 11234556666666 6889999999997421 3333 3 5669999999
Q ss_pred HhhCCC--CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-
Q 010008 177 TAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY- 253 (520)
Q Consensus 177 ~all~p--GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~- 253 (520)
.+++.+ ||+|+.....+ +++.+. ......| +..+.++++ +++.+|+++++..+++ ++++|.+.+..+
T Consensus 95 ~~l~~~~~Gd~v~~~~~g~---~~~~~~---~~a~~~G--~~~~~~~~~-~~~~~~~~~~~~~i~~-~t~lV~~~h~et~ 164 (377)
T 3e77_A 95 LNLIGLKAGRCADYVVTGA---WSAKAA---EEAKKFG--TINIVHPKL-GSYTKIPDPSTWNLNP-DASYVYYCANETV 164 (377)
T ss_dssp HHHGGGSTTCEEEECCCSH---HHHHHH---HHHTTTS--EEEECSCCC-SSSCSCCCGGGCCCCT-TCSCEEEESEETT
T ss_pred HhccCCCCCCeEEEEECCH---HHHHHH---HHHHHhC--CceEEeccC-CCcCCCCChHHhccCC-CccEEEEeCccCc
Confidence 999865 99998776533 333221 1122234 355555554 3456677777766766 889988775544
Q ss_pred -CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCc-----chhh
Q 010008 254 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV-----LGVE 326 (520)
Q Consensus 254 -p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~-----~~~~ 326 (520)
+...|+ ||+++|+++++|++|++|.+..++. ..|++++|.||++ ||.| |+++.+++.. ....
T Consensus 165 tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~-----~~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~p~ 233 (377)
T 3e77_A 165 HGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVS-----KFGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALRECPS 233 (377)
T ss_dssp TTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGG-----GCSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTSCG
T ss_pred hheEchh-----hhccCCCEEEEEcccccCCCCCchh-----hcCEEEEeccccc-CCCccEEEEEcHHHHhhccCCCCc
Confidence 446777 5788999999999999887644432 2457899999999 8998 9999988521 0001
Q ss_pred H---HHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC--CC-eeE
Q 010008 327 L---ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS--DN-HLV 398 (520)
Q Consensus 327 l---~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt--~~-~~~ 398 (520)
+ ....+ .....++|+...++++..|++.+.+. +.+...++..+.++++.+.|.+. |+.+..... .. ..+
T Consensus 234 ~~~~~~~~~---~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~iv 310 (377)
T 3e77_A 234 VLEYKVQAG---NSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNI 310 (377)
T ss_dssp GGCHHHHHT---TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEE
T ss_pred hhhHHHHhh---cCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEE
Confidence 1 11111 12235799999999999999988766 67888899999999999999985 887533111 11 223
Q ss_pred EEEecCCCCCH-----HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 399 LVDLRPMGIDG-----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 399 ~vd~~~~g~~~-----~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
.+.+. ++++ ..+...|++.||.+. +|+. ..+++|+|+...+ +++|+++++++|+++++.
T Consensus 311 sf~~~--~~~~~~~~~~~~l~~l~~~Gi~~~----~g~~---~~g~iRiS~~~~~----t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 311 PFRIG--NAKGDDALEKRFLDKALELNMLSL----KGHR---SVGGIRASLYNAV----TIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EEEES--STTCCHHHHHHHHHHHHHTTEESC----BCCT---TTCSEEEECCTTS----CHHHHHHHHHHHHHHHHH
T ss_pred EEEcC--CCCCchhHHHHHHHHHHHCCcEEe----CCCC---cCCEEEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence 44443 3332 234556668999973 3442 2457999987654 489999999999988753
No 126
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.91 E-value=3.5e-23 Score=212.87 Aligned_cols=328 Identities=11% Similarity=0.050 Sum_probs=221.5
Q ss_pred ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCC---CCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeec-C-Ch
Q 010008 94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR---YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-L-SG 168 (520)
Q Consensus 94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~r---yy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~-~-sG 168 (520)
+.+++.++..++|+.|+++|...+.+.+.. |..- .+.+.++.+.+| .+++.++++||++.++ +|.. + +|
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~--~~s~~~~~hr~~~~~~~~~-~~r~~la~ll~~~~~~---~v~f~t~~~ 78 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGR--GYSIMEISHRTKVFEEVHF-GAQEKAKKLYELNDDY---EVLFLQGGA 78 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGS--SSCGGGSCSSSHHHHHHHH-HHHHHHHHHHTCCTTE---EEEEESSHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccC--CceeeccCCCCHHHHHHHH-HHHHHHHHHhCCCCCc---eEEEEcCcH
Confidence 567889999999999999999988765532 2211 133556666666 6889999999996421 3333 4 45
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC-CCHHHHHHHhhhcCCcEEE
Q 010008 169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-VDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~-iD~d~le~~i~~~~pklIi 247 (520)
|+++.+++.+++ +||+++.... |+++|.+.. .....|. ++..++++.+... ++++. + +++ ++++|.
T Consensus 79 T~a~n~~~~~~~-~~~~~~~i~~---~~~~~~~~~---~a~~~G~--~v~~~~~~~~g~~~~~~~~-~--l~~-~t~lv~ 145 (361)
T 3m5u_A 79 SLQFAMIPMNLA-LNGVCEYANT---GVWTKKAIK---EAQILGV--NVKTVASSEESNFDHIPRV-E--FSD-NADYAY 145 (361)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEEC---SHHHHHHHH---HHHHTTC--CEEEEEECTTTTSCSCCCC-C--CCT-TSSEEE
T ss_pred HHHHHHHHHhcC-CCCeEEEEeC---CHHHHHHHH---HHHHcCC--ceEEEecccCcCCCcCChh-h--cCC-CCCEEE
Confidence 599999999998 8997744332 233333211 1122344 4444555533211 56666 4 766 899988
Q ss_pred EcCCCC--CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcch
Q 010008 248 AGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 324 (520)
Q Consensus 248 ~~~s~~--p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~ 324 (520)
+.+..+ +...|. |++ +|+++++|++|++|.+..++ ...|++++|.||++ ||.| |+++.++
T Consensus 146 ~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~-----~~~d~~~~s~~K~~-gp~G~g~l~~~~----- 208 (361)
T 3m5u_A 146 ICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDF-----SNIALFYGGVQKNA-GISGLSCIFIRK----- 208 (361)
T ss_dssp EESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCC-----TTEEEEEEETTTTS-SCTTCEEEEEEH-----
T ss_pred EeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCc-----ccCCEEEEechhcc-CCCccEEEEEcH-----
Confidence 875544 334441 444 49999999999988764443 24799999999999 7998 9999988
Q ss_pred hhHHHhhcccC------------CCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-C-EEe
Q 010008 325 VELESAINNAV------------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-KLV 389 (520)
Q Consensus 325 ~~l~~~i~~~~------------~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-~-~v~ 389 (520)
++.+++.... .....|+|+...+.++..|++.+.+. +.+...++..+.++++.+.|.+.+ + .+.
T Consensus 209 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~ 287 (361)
T 3m5u_A 209 -DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGH 287 (361)
T ss_dssp -HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEES
T ss_pred -HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeecc
Confidence 4433332100 11234789999999999999988877 688889999999999999998865 5 554
Q ss_pred cCC--CCCeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 390 SGG--SDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 390 ~~g--t~~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
.+. ...+++.+.+.. .+++ ..+...|++.||.+.. |+. ..+++|+|+...+ +++|+++++++|++
T Consensus 288 ~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~----g~~---~~g~iRiS~~~~~----t~edId~l~~al~~ 355 (361)
T 3m5u_A 288 ADKKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLK----GHR---ILGGIRASIYNAL----NLDQVKTLCEFMKE 355 (361)
T ss_dssp SCGGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCB----CCT---TTCSEEEECCTTS----CHHHHHHHHHHHHH
T ss_pred CCHHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEec----CCC---ccCeEEEEccCCC----CHHHHHHHHHHHHH
Confidence 321 112344455542 2233 4566888999999743 332 2356999987655 48999999999998
Q ss_pred HHHH
Q 010008 467 GVEI 470 (520)
Q Consensus 467 ~l~~ 470 (520)
+.+.
T Consensus 356 ~~~~ 359 (361)
T 3m5u_A 356 FQGK 359 (361)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7753
No 127
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.91 E-value=7.9e-24 Score=216.35 Aligned_cols=326 Identities=12% Similarity=0.087 Sum_probs=212.9
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCC----cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh--
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG----GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-- 168 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~----g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-- 168 (520)
.+.+.+++..+|+.|++++.+.+.+. . .++...|. .... ..+.+.+++++++++|++..+ +|.+++|
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~---~v~~~~g~g 76 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF-N--DTQMSVMELSHRSQSY-EEVHEQAQNLLRELLQIPNDY---QILFLQGGA 76 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS-T--TSSSCGGGSCTTSHHH-HHHHHHHHHHHHHHHTCCTTE---EEEEESSHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh-c--cccccccccCCCCHHH-HHHHHHHHHHHHHHhCCCCCc---eEEEECCcc
Confidence 56777888889999999999887542 1 12211111 1122 223334668899999996311 3444443
Q ss_pred HHHHHHHHHhhCCC---CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHH-HhhhcCCc
Q 010008 169 SPANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRPK 244 (520)
Q Consensus 169 s~A~~~~l~all~p---GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~-~i~~~~pk 244 (520)
++|+.+++.+++.+ ||.|+...+.| ... ..+...| +++.++++++++.+|++++++ ++++ +||
T Consensus 77 t~al~~~~~~l~~~~~~g~~vi~~~~~~------~~~---~~~~~~g---~~~~v~~~~~~~~~d~~~l~~~~i~~-~~k 143 (360)
T 1w23_A 77 SLQFTMLPMNLLTKGTIGNYVLTGSWSE------KAL---KEAKLLG---ETHIAASTKANSYQSIPDFSEFQLNE-NDA 143 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHH------HHH---HHHHTTS---EEEEEEECGGGTSCSCCCGGGCCCCT-TEE
T ss_pred hHHHHHHHHHhcCCCCcccEEEecchhH------HHH---HHHHHhC---CeEEeecccccCcCCccchHhhccCC-CCC
Confidence 68999999999876 55566544322 110 0122334 455666664456689999988 8866 899
Q ss_pred EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCC
Q 010008 245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDP 321 (520)
Q Consensus 245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~ 321 (520)
+|++++++||+ ..+ +|++++|++|++|++|..+.... ++...|++++|+||+++ |.| |++++++
T Consensus 144 ~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~-----~~~~~di~~~s~sK~~~-~~G~G~~~~~~-- 210 (360)
T 1w23_A 144 YLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPL-----KVNQFGMIYAGAQKNLG-PSGVTVVIVKK-- 210 (360)
T ss_dssp EEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTTS-CTTCEEEEEEH--
T ss_pred EEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCCc-----CcccCCEEEEEcccccC-CCCcEEEEEcH--
Confidence 99998888776 445 33448999999999987664321 22223899999999885 556 9999987
Q ss_pred cchhhHHHhhcccC-----------CCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-C-E
Q 010008 322 VLGVELESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-K 387 (520)
Q Consensus 322 ~~~~~l~~~i~~~~-----------~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-~-~ 387 (520)
++.+++.... .....++++...++++..+++.+... ++++..+++.++++.+.+.|.+.+ + .
T Consensus 211 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 286 (360)
T 1w23_A 211 ----DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYV 286 (360)
T ss_dssp ----HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSE
T ss_pred ----HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 5555544321 01223667777777777778765433 457788899999999999998865 5 5
Q ss_pred Eec-CC-CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008 388 LVS-GG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH 465 (520)
Q Consensus 388 v~~-~g-t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~ 465 (520)
... +. ..++++++++.. +.+..++.+.|.+.||.+ .||.. .+++|||++...+ +++|++++++.|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~----~~~~~---~~~~iRis~~~~~----~~~~i~~~~~~l~ 354 (360)
T 1w23_A 287 GHAEKGSRSLMNVTFNLRN-EELNQQFLAKAKEQGFVG----LNGHR---SVGGCRASIYNAV----PIDACIALRELMI 354 (360)
T ss_dssp ESSCGGGBCSSEEEEECSS-HHHHHHHHHHHHHTTEES----CBCCT---TTCSEEEECCTTS----CHHHHHHHHHHHH
T ss_pred ccCCchhccCcEEEEEcCC-CccHHHHHHHHHHCCeee----ecCCC---CCCeEEEEecCCC----CHHHHHHHHHHHH
Confidence 431 21 123466777642 123455666788899998 34432 2578999987543 4899999999998
Q ss_pred HHHH
Q 010008 466 EGVE 469 (520)
Q Consensus 466 ~~l~ 469 (520)
++++
T Consensus 355 ~~~~ 358 (360)
T 1w23_A 355 QFKE 358 (360)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 128
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.91 E-value=6.7e-23 Score=214.00 Aligned_cols=326 Identities=10% Similarity=0.076 Sum_probs=203.1
Q ss_pred ccceEecCC------C-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC
Q 010008 94 KSLELIASE------N-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL 166 (520)
Q Consensus 94 ~~i~Liase------n-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~ 166 (520)
+.|+|..++ . .+++.|.+++....... ..+|+. ..|. .++.+...+++....+.+.. .+|.++
T Consensus 38 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~Y~~---~~g~---~~lr~~la~~~~~~~~~~~~---~~i~~t 107 (413)
T 3t18_A 38 AVINAALGTLLDDKGKIIALPSVYDRLDEMDRSH-IASYAP---IEGE---KDYRKIVIDTLFGPYKPEGY---ISAIAT 107 (413)
T ss_dssp GCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHH-HHSCCC---TTCC---HHHHHHHHHHHHGGGCCSSE---EEEEEE
T ss_pred ceEeccccCccCCCCCcCChHHHHHHHHhcCccc-ccCcCC---CCCC---HHHHHHHHHHHhcccCcccc---CcEEEc
Confidence 567877654 2 36889999987643211 123432 1122 24443334555444443311 245556
Q ss_pred ChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---C
Q 010008 167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---R 242 (520)
Q Consensus 167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~ 242 (520)
+|+ +|+..++.++++|||+|++++|.|.++.. .+...|. +++.++++.+++.+|+++|++.+++. +
T Consensus 108 ~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (413)
T 3t18_A 108 PGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRK--------ICEEFGR--NFKTFEFFTDDFAFNIDVYKEAIDEGIRDS 177 (413)
T ss_dssp SHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHH--------HHHHHTC--EEEEECCBCTTSSBCHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHhcCCCCEEEECCCCcccHHH--------HHHHhCC--eEEEeeccCCCCCcCHHHHHHHHHHHhhcC
Confidence 666 99999999999999999999998765421 2334455 66777774455789999999998763 6
Q ss_pred Cc-EEEEcCC-CCCC--CCCHHHHH---HHHH------HhCCEEEEechhhcccccccccCCCC-C-----ccc---EEE
Q 010008 243 PK-LIIAGAS-AYPR--DFDYPRMR---QIAD------AVGALLMMDMAHISGLVAASVVADPF-K-----YCD---VVT 300 (520)
Q Consensus 243 pk-lIi~~~s-~~p~--~~d~~~i~---~ia~------~~g~~li~D~Ah~~gli~~~~~~~p~-~-----~aD---iv~ 300 (520)
++ ++++++| +||+ ..+.+++. ++|+ ++|++||+|++| .++...+....++ . ..+ +++
T Consensus 178 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (413)
T 3t18_A 178 DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAY-LEFAGDGDQQRKFFEKFSNLPRNLFVVVA 256 (413)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTT-GGGSSSSSTTTGGGGGGTTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEeccc-ccccCChhhHHHHHHHHhhcCCCeeEEEE
Confidence 77 7888888 8886 66665555 5555 899999999995 5555444221111 1 112 777
Q ss_pred eccCccc--CCCCceEEEe---eCCCcchhhHHHhhcccCCC---CCCCCChHHHHHHHHHHHHHhc----CchhHHHHH
Q 010008 301 TTTHKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLKHAQ----SPEFKVYQN 368 (520)
Q Consensus 301 ~S~hK~l--~GprgG~I~~---~~~~~~~~~l~~~i~~~~~p---~~~g~p~~~~iaala~al~~~~----~~~~~~~~~ 368 (520)
+|+||++ +|+|.|++++ ++ ++.+.+...... +...+++....+++..+++... ....++..+
T Consensus 257 ~S~sK~~~~~G~riG~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 330 (413)
T 3t18_A 257 FSMSKSHTAYGLRSGAAVGISSSK------EIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRN 330 (413)
T ss_dssp EEHHHHTTCGGGCCEEEEEEESCH------HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred EecCccCCCcCcCcEEEEEecCCH------HHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 8999986 6788899998 55 566555432110 0012223333333333332210 012245567
Q ss_pred HHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008 369 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 448 (520)
Q Consensus 369 ~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t 448 (520)
++.++++.+.+.|.+.|+++..+. .+.++|+++. +..++.+.|.++||.+. || ++++||+....+
T Consensus 331 ~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~~gv~v~----~g------~~~iRis~~~~~ 395 (413)
T 3t18_A 331 MLKSRADVFVTAAKENKLTMIPYF-GGFFTFIPTD----KAFDIVKDLEKENIFTI----PS------AKGIRVAICGVG 395 (413)
T ss_dssp HHHHHHHHHHHHHHHTTCCCBCCC-SSSCEEEECS----CHHHHHHHHHHTTEECE----EC------SSEEEECTTTSC
T ss_pred HHHHHHHHHHHHHHHcCCCccCCC-ceEEEEeCCC----CHHHHHHHHHhCCEEEe----cC------CCceEEEEeeCC
Confidence 788888899999988888876542 3455666652 56778888999999994 43 468999876544
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 010008 449 TRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 449 t~g~~~~d~~~la~~i~~~l~ 469 (520)
+ +++ ++.|.++++
T Consensus 396 ~-----~~~---l~~l~~~l~ 408 (413)
T 3t18_A 396 E-----EKI---PKLVQRLAF 408 (413)
T ss_dssp G-----GGH---HHHHHHHHH
T ss_pred H-----HHH---HHHHHHHHH
Confidence 3 444 555555554
No 129
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.91 E-value=1.2e-22 Score=208.51 Aligned_cols=318 Identities=14% Similarity=0.071 Sum_probs=208.1
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 170 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~ 170 (520)
..|+|..+++. .++.|++++...+.+ ..+|+.. + ..+++ +.+++++|++++ +|.+++|+ +
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~----~---~~~l~----~~la~~~~~~~~----~v~~~~g~~~ 87 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDC--IERYPDA----D---YFHLH----QALARHHQVPAS----WILAGNGETE 87 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCCT----T---CHHHH----HHHHHHHTSCGG----GEEEESSHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHH--hhcCCCC----C---HHHHH----HHHHHHHCcCHH----HEEECCCHHH
Confidence 46888877764 679999999887753 1234321 1 23444 677888898865 34456665 8
Q ss_pred HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEc
Q 010008 171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~ 249 (520)
|+.+++.++ +||+|++.+|.|.+... .+...|. +++.++++++ +..+ ++++.+.+++ ++++|+++
T Consensus 88 al~~~~~~~--~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-l~~~~~~~~~-~~~~v~i~ 153 (364)
T 1lc5_A 88 SIFTVASGL--KPRRAMIVTPGFAEYGR--------ALAQSGC--EIRRWSLREADGWQL-TDAILEALTP-DLDCLFLC 153 (364)
T ss_dssp HHHHHHHHH--CCSEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGGGTTCC-CTTHHHHCCT-TCCEEEEE
T ss_pred HHHHHHHHc--CCCeEEEeCCCcHHHHH--------HHHHcCC--eEEEEeCCcccccch-hHHHHHhccC-CCCEEEEe
Confidence 999888888 78999999988765321 2233454 5566666532 2222 4656666655 78999888
Q ss_pred CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC-CC--cccEEEeccCccc--CCCCceEEE-ee
Q 010008 250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK--YCDVVTTTTHKSL--RGPRGGMIF-FK 318 (520)
Q Consensus 250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p-~~--~aDiv~~S~hK~l--~GprgG~I~-~~ 318 (520)
.++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+..... +. ..+++++|+||++ +|.|.|+++ .+
T Consensus 154 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 232 (364)
T 1lc5_A 154 TPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDF-IPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD 232 (364)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-STTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhh-ccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECC
Confidence 888886 566 889999999999999999997543 221111011 11 4678999999997 577889999 77
Q ss_pred CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCee
Q 010008 319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL 397 (520)
Q Consensus 319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~ 397 (520)
+ ++.+.+.....+ .+++....++...+++. ....++..+++.++++.+.+.|.+. |+.+..+ ...+
T Consensus 233 ~------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~g~~ 299 (364)
T 1lc5_A 233 D------AAMARMRRQQMP---WSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG--RANY 299 (364)
T ss_dssp H------HHHHHHHHHSCT---TCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC--SSSE
T ss_pred H------HHHHHHHHhCCC---CCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC--CCeE
Confidence 6 676666543322 12334444443334432 1234667778888899999999875 8877543 2345
Q ss_pred EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+++++.. +..++.+.|.+.||.+.. |.. +...++++||++. +++|++++.+.|+++++.
T Consensus 300 ~~~~~~~---~~~~l~~~l~~~gi~v~~----g~~~~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 300 LLLRCER---EDIDLQRRLLTQRILIRS----CANYPGLDSRYYRVAIR-------SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp EEEEESC---TTCCHHHHHHTTTEECEE----CTTSTTCCTTEEEEECC-------CHHHHHHHHHHHHHHC--
T ss_pred EEEECCC---cHHHHHHHHHHCCcEEee----CcccCCCCCCEEEEEeC-------CHHHHHHHHHHHHHHhhc
Confidence 6777642 234566777788999854 322 1223578999953 378899999999887653
No 130
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.91 E-value=1.6e-22 Score=209.71 Aligned_cols=316 Identities=15% Similarity=0.150 Sum_probs=211.1
Q ss_pred cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh
Q 010008 100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 179 (520)
Q Consensus 100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al 179 (520)
.+...+++.+++++...+.+.+ |+ ..+..+++| +.+++++|.+. .|.++||++|+..++.++
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~al~~~ 69 (390)
T 3b8x_A 8 LASSTWDDLEYKAIQSVLDSKM--------FT-MGEYVKQYE----TQFAKTFGSKY-----AVMVSSGSTANLLMIAAL 69 (390)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHcCC--------CC-CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHH
Confidence 3566789999999988876421 12 234445555 67888999873 466799999999999998
Q ss_pred -------CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC-C
Q 010008 180 -------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA-S 251 (520)
Q Consensus 180 -------l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~-s 251 (520)
++|||+|++++++|.+... .+...|. +++.++++++++.+|+++|++++++ ++++|++.. +
T Consensus 70 ~~~~~~~~~~g~~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~ 138 (390)
T 3b8x_A 70 FFTKKPRLKKGDEIIVPAVSWSTTYY--------PLQQYGL--RVKFVDIDINTLNIDIESLKEAVTD-STKAILTVNLL 138 (390)
T ss_dssp TSSSSCSCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEECGG
T ss_pred HhhhhcCCCCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCccccCcCHHHHHHHhCc-CCeEEEEECCc
Confidence 8999999999998765432 2233454 6777788766689999999999987 899988853 3
Q ss_pred CCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEecc--CcccCCCCceEEEeeCCCcchhhHHH
Q 010008 252 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELES 329 (520)
Q Consensus 252 ~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~--hK~l~GprgG~I~~~~~~~~~~~l~~ 329 (520)
.+ ..|+++|.++|+++|++|++|++|..|....+. ... ...|+.++|+ +|.+.+++||+++++++ ++.+
T Consensus 139 g~--~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~g-~~~~~~~~s~~~~k~~~~g~gG~~~~~~~-----~l~~ 209 (390)
T 3b8x_A 139 GN--PNNFDEINKIIGGRDIILLEDNCESMGATFNNK-CAG-TFGLMGTFSSFYSNHIATMEGGCIVTDDE-----EIYH 209 (390)
T ss_dssp GC--CCCHHHHHHHHTTSCCEEEEECTTCTTCEETTE-ETT-SSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHH
T ss_pred cC--hhhHHHHHHHHHHcCCEEEEECcCcccCEECCc-ccc-cccceEEEEccCCCCCccCCceEEEeCCH-----HHHH
Confidence 33 579999999999999999999999888765321 111 0236655443 35566678899999873 3433
Q ss_pred hhcccCCC------------------------------CC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008 330 AINNAVFP------------------------------GL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 378 (520)
Q Consensus 330 ~i~~~~~p------------------------------~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~ 378 (520)
++...... +. .+.+.....++++ +++ .+++..++..++++++.
T Consensus 210 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l~-----~l~~~~~~~~~~~~~l~ 283 (390)
T 3b8x_A 210 ILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QLK-----KLPRFISVRRKNAEYFL 283 (390)
T ss_dssp HHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHH
Confidence 32211100 11 1133444443333 232 34567788888999999
Q ss_pred HHHHHC-CCEEecCCCC-C-eeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCC--C-CC-C--------------
Q 010008 379 SRLVEL-GYKLVSGGSD-N-HLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDK--S-AL-V-------------- 436 (520)
Q Consensus 379 ~~L~~~-G~~v~~~gt~-~-~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~-~~-~-------------- 436 (520)
+.|.+. |+++...... + +.+.+.+.. .+.+.+++.+.|.+.||.++.. .|+.. . +. .
T Consensus 284 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (390)
T 3b8x_A 284 DKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPI-VTGNFLKNTDVLKYFDYTVHNNVDNAE 362 (390)
T ss_dssp HHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCS-TTSSGGGCHHHHTTCEEEESSCCHHHH
T ss_pred HHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeee-cCCchhhcchhhhcCCCCCcCCChHHH
Confidence 999874 7777543211 2 234445542 1567888999999999999753 22211 1 10 0
Q ss_pred ---CCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008 437 ---PGGIRIGSPAMTTRGFSEKEFVAIADFI 464 (520)
Q Consensus 437 ---~~giRig~~~~tt~g~~~~d~~~la~~i 464 (520)
.+.|||++... ++++|++++++.|
T Consensus 363 ~~~~~~l~l~~~~~----~t~~di~~i~~~l 389 (390)
T 3b8x_A 363 YLDKNGLFVGNHQI----ELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHEEEEECCSS----CCHHHHHHHHHHT
T ss_pred HHhcCEEEeeCCCC----CCHHHHHHHHHhh
Confidence 13589987654 4699999999876
No 131
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.91 E-value=3e-24 Score=222.77 Aligned_cols=333 Identities=13% Similarity=0.066 Sum_probs=211.1
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeec--CChHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP--LSGSPA 171 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~-~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~--~sGs~A 171 (520)
...+.++..++|+.|+++|...+.+.+..|... .-.+.+.++.+.+| .+++.+++++|++.++ +|.. .+||++
T Consensus 28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~-~ar~~la~ll~~~~~~---evif~t~~~T~a 103 (386)
T 3qm2_A 28 VFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAE-EAEQDFRDLLNIPSNY---KVLFCHGGGRGQ 103 (386)
T ss_dssp CEECCSSSCCCCHHHHHHHTCC-----------------------CCH-HHHHHHHHHHTCCTTE---EEEEEESCTTHH
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCc---eEEEEcCCchHH
Confidence 355678888999999999998887654322110 01122444445555 5789999999996421 2333 467799
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-CCCCC-CCHHHHHHHhhhcCCcEEEEc
Q 010008 172 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGL-VDYDMLEKTAILFRPKLIIAG 249 (520)
Q Consensus 172 ~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~~~~~-iD~d~le~~i~~~~pklIi~~ 249 (520)
+.+++.+++++||+|++.... +++|.+.. .....| .+..+ +++ ++.+. +|++++++++++ +|++|.+.
T Consensus 104 ~n~ai~~l~~~gd~v~~~~~~---~~~~~~~~---~a~~~G-~v~~v--~~~~~~~G~~~~~~~~~~~l~~-~t~lV~~~ 173 (386)
T 3qm2_A 104 FAGVPLNLLGDKTTADYVDAG---YWAASAIK---EAKKYC-APQII--DAKITVDGKRAVKPMREWQLSD-NAAYLHYC 173 (386)
T ss_dssp HHHHHHHHCTTCCEEEEEESS---HHHHHHHH---HHTTTS-EEEEE--ECEEEETTEEEECCGGGCCCCT-TCSCEEEC
T ss_pred HHHHHHhccCCCCeEEEEeCC---HHHHHHHH---HHHHhC-CeEEE--ecCcccCCCCCCchHHHhhcCC-CCcEEEEE
Confidence 999999999999998866543 33333211 112234 33443 343 12343 788888888877 89998887
Q ss_pred CCCC--CCC-CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchh
Q 010008 250 ASAY--PRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV 325 (520)
Q Consensus 250 ~s~~--p~~-~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~ 325 (520)
...+ +.. .|+++|. +|+++++|++|+.|.+..++. ..|++++|.||++ ||.| |+++.+++
T Consensus 174 h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~-----~~~~~~~s~hK~l-GP~G~g~l~v~~~----- 237 (386)
T 3qm2_A 174 PNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVS-----RYGVIYAGAQKNI-GPAGLTLVIVRED----- 237 (386)
T ss_dssp SEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGG-----GCSEEEEETTTTT-CCTTEEEEEEEGG-----
T ss_pred CCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcc-----ccCEEEEeccccc-CCCccEEEEECHH-----
Confidence 5544 444 6788775 799999999999887654432 2367889999999 7999 99999984
Q ss_pred hHHHhhccc-----------CCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCCCEEe-cCC
Q 010008 326 ELESAINNA-----------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLV-SGG 392 (520)
Q Consensus 326 ~l~~~i~~~-----------~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G~~v~-~~g 392 (520)
+.+++... ..+...|+|+...++++..|++.+... +.++..++..+.++++.+.|.+.|+... ...
T Consensus 238 -~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~ 316 (386)
T 3qm2_A 238 -LLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQ 316 (386)
T ss_dssp -GCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCG
T ss_pred -HHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCH
Confidence 21111100 011124688888999999999988765 6788888999999999999988776322 111
Q ss_pred --CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 393 --SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 393 --t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
...+.+.+.+...+++ ..+...|++.||.+.. |+. ..+++|+|+...+ +++|+++++++|+++.+.
T Consensus 317 ~~rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~----g~~---~~~~iRiS~~~~~----t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 317 ANRSRMNVPFQLADNTLD-KVFLEESFAAGLHALK----GHR---VVGGMRASIYNAM----PIEGVKALTDFMIDFERR 384 (386)
T ss_dssp GGBCSSEEEEEESSGGGH-HHHHHHHHHTTEECCB----CCT---TTCSEEEECCTTS----CHHHHHHHHHHHHHHHHH
T ss_pred HHcCceEEEEECCCcccc-HHHHHHHHHCCCEEeC----CCC---CcCeEEEEcCCCC----CHHHHHHHHHHHHHHHHh
Confidence 1123444555432344 4556668999999743 332 1356999986554 489999999999987653
No 132
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.91 E-value=5.3e-23 Score=212.75 Aligned_cols=331 Identities=16% Similarity=0.089 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHhh--ccceEecCC--CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC
Q 010008 81 VCEIITKEKERQF--KSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE 156 (520)
Q Consensus 81 ~~~~~~~e~~~~~--~~i~Liase--n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~ 156 (520)
.+..+....+... +.+++...+ .++++.|++++. .| ++. ..+++..++.+++++|++.
T Consensus 14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~----------~~~---~~~~~~~~~~~a~~~g~~~ 75 (374)
T 2aeu_A 14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TY----------IGS---SYFAEKVNEYGLKHLGGDE 75 (374)
T ss_dssp HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----ST----------THH---HHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hh----------cCc---hHHHHHHHHHHHHHhCCCC
Confidence 3444444443332 356666543 468999999996 11 111 2344455567788999842
Q ss_pred CCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHH
Q 010008 157 NKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK 236 (520)
Q Consensus 157 ~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~ 236 (520)
.+. .+.+++|++|+..++.++ |||+|+++++.|++|+.... .+...|. +++.+ .|++++++
T Consensus 76 ~~~--~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-----~~~~~g~--~~~~v--------~d~~~l~~ 136 (374)
T 2aeu_A 76 NDK--CVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-----SCKIVNA--KYFES--------DKVGEILN 136 (374)
T ss_dssp TEE--EEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-----HHHHTTC--EEEEE--------SCHHHHHT
T ss_pred cce--EEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-----HHHHcCc--EEEEe--------CCHHHHHh
Confidence 111 245577779999999988 99999999998887753110 1223454 44443 38899988
Q ss_pred HhhhcCCcE-EEEcCCCCCC---CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCCC
Q 010008 237 TAILFRPKL-IIAGASAYPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR 311 (520)
Q Consensus 237 ~i~~~~pkl-Ii~~~s~~p~---~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gpr 311 (520)
+ ++ ++|+ |++++++||+ ..++++|.++|+++|+++|+|++|..+........+++. ++|++++|+||+++|||
T Consensus 137 ~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~ 214 (374)
T 2aeu_A 137 K-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR 214 (374)
T ss_dssp T-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCS
T ss_pred c-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcc
Confidence 8 55 8999 9888888875 568999999999999999999997665310010111222 57999999999999999
Q ss_pred ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HHHHHH----
Q 010008 312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL----ASRLVE---- 383 (520)
Q Consensus 312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l----~~~L~~---- 383 (520)
+|++++++ ++.+++....... .++++....++...+++... .+..++..++++.+ .+.|.+
T Consensus 215 ~G~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 283 (374)
T 2aeu_A 215 GGLLAGKK------ELVDKIYIEGTKF-GLEAQPPLLAGIYRALKNFN----LERIRKAFERAKNFDLSKIEKLNKELKA 283 (374)
T ss_dssp CEEEEEEH------HHHHHHHHHHHTT-TCBCCHHHHHHHHHHHHHCC----HHHHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred eEEEEECH------HHHHHHHHhhccc-cCCCCHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999988 6766665432211 12334444445555666531 12234444555444 344433
Q ss_pred ----CCCEEecCCCCCeeEEE-EecCCCCC---HH-HHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008 384 ----LGYKLVSGGSDNHLVLV-DLRPMGID---GA-RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE 454 (520)
Q Consensus 384 ----~G~~v~~~gt~~~~~~v-d~~~~g~~---~~-~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~ 454 (520)
.|+.+...+. +.++++ ++.. ..+ .. .+.++|+++||.+.. |...+...+++||+..... ..+
T Consensus 284 ~~~~~g~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gV~v~~----g~~~~~~~~~lRi~~~~~~---~~~ 354 (374)
T 2aeu_A 284 IDDNINIVYERTPT-GFVIKRVYKDD-TINIKKLIEIGFNLLKNYGIITIT----VAGMPGASKSLRIDLTSRD---AER 354 (374)
T ss_dssp TCTTEEEEEEECSS-EEEEEEEESSH-HHHHHHHHHHHHHHHHHHCEECST----TSSSCSSCCSEEEETTSGG---GGG
T ss_pred hhhccCcceeeCCc-eEEEEeecccc-cccccchHHHHHHHHHhCCEEEec----CCCCCCCCCeEEEEcCCch---HHH
Confidence 2455433322 233332 3321 000 01 344677889999954 3221223568999965322 234
Q ss_pred HHHHHHHHHHHHHHHH
Q 010008 455 KEFVAIADFIHEGVEI 470 (520)
Q Consensus 455 ~d~~~la~~i~~~l~~ 470 (520)
.+++++++.++++++.
T Consensus 355 ~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 355 IDDNYIIKAIVESIKM 370 (374)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4588888888887764
No 133
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.91 E-value=9.2e-23 Score=214.37 Aligned_cols=338 Identities=14% Similarity=0.146 Sum_probs=206.1
Q ss_pred ccceEecCCC--CChHHHHHHHhhhhhccCC-CCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008 94 KSLELIASEN--FTSRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS- 169 (520)
Q Consensus 94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~-~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs- 169 (520)
+.|+|..++. .+++.|++++...+.+... .|+. . |+......++++...+++.+.++++++ +|.+++|+
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~-y~~~~g~~~l~~~ia~~~~~~~~~~~~----~i~~t~G~~ 129 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYS--G-YGAEQGAKPLRAAIAKTFYGGLGIGDD----DVFVSDGAK 129 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCC--C-CCCTTCCHHHHHHHHHHHHTTTTCCGG----GEEEESCHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCcc--C-CCCCCCCHHHHHHHHHHHHccCCCCcc----eEEECCChH
Confidence 4688877764 3789999999887763211 1211 1 222222346665555555544577664 45567887
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc----------eEEEEEcccCCC-CCCCCHHHHHHHh
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDES-TGLVDYDMLEKTA 238 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~----------~~~~v~~~~d~~-~~~iD~d~le~~i 238 (520)
+++. ++.++++|||+|++.+|.|.++... +...|. +.+++.++++.+ +...|+++
T Consensus 130 ~al~-~l~~l~~~gd~Vl~~~p~y~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 195 (432)
T 3ei9_A 130 CDIS-RLQVMFGSNVTIAVQDPSYPAYVDS--------SVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST----- 195 (432)
T ss_dssp HHHH-HHHHHHCTTCCEEEEESCCTHHHHH--------HHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----
T ss_pred HHHH-HHHHHcCCCCEEEEeCCCCHHHHHH--------HHHcCCcccccccccccCceEEeccCcccCCcCChhh-----
Confidence 6665 4688899999999999988765321 111121 013344555432 24555443
Q ss_pred hhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC--CC---cccEEEeccCccc-
Q 010008 239 ILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK---YCDVVTTTTHKSL- 307 (520)
Q Consensus 239 ~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~~---~aDiv~~S~hK~l- 307 (520)
.+ ++++|+++.++||+ .++ +++|+++|+++|++||+|++|.. ++..+..... +. ..++++.|+||++
T Consensus 196 ~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 273 (432)
T 3ei9_A 196 VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAM-YMSDDNPRSIFEIPGAEEVAMETASFSNYAG 273 (432)
T ss_dssp CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GCCSSCCSSGGGSTTGGGTEEEEEESHHHHC
T ss_pred CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHh-hccCCCCCChhhcCCCCCeEEEEecchhccC
Confidence 23 78999998899987 444 66777889999999999999764 3333221111 11 3458899999987
Q ss_pred -CCCCceEEEeeCCCc--chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC
Q 010008 308 -RGPRGGMIFFKKDPV--LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL 384 (520)
Q Consensus 308 -~GprgG~I~~~~~~~--~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~ 384 (520)
+|+|.|+++++++.. ....+.+.+........ ++++....++...++........++..+++.++++.+.+.|.+.
T Consensus 274 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 352 (432)
T 3ei9_A 274 FTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCF-NGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL 352 (432)
T ss_dssp TTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSC-CCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccceEEEEEChHHhhcchHHHHHHHHHHhcccc-CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 788899999988420 00001333332211111 22333333333334432111234677888999999999999988
Q ss_pred CCEEecCCCCCeeEEEEecCCCCCHHHH-HHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008 385 GYKLVSGGSDNHLVLVDLRPMGIDGARV-EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 463 (520)
Q Consensus 385 G~~v~~~gt~~~~~~vd~~~~g~~~~~~-~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~ 463 (520)
|+++..+ ..+.++|+++. +.+..++ ..+++++||.+..+..++ +..++++||++. .+++++++.++.
T Consensus 353 g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ll~~~gv~v~~g~~f~---~~~~~~iRis~~------~~~e~l~~~l~r 420 (432)
T 3ei9_A 353 GYDVYGG-KNAPYVWVHFP--NQSSWDVFAEILEKTHVVTTPGSGFG---PGGEGFVRVSAF------GHRENILEACRR 420 (432)
T ss_dssp TCCEEEC-SSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGGC---GGGTTEEEEECC------SCHHHHHHHHHH
T ss_pred CceecCC-CcceEEEEECC--CCCHHHHHHHHHHHCCEEEeCchHhC---CCCCCEEEEEec------CCHHHHHHHHHH
Confidence 9887754 23466788886 4556554 455667899986543222 224678999952 257888888877
Q ss_pred HHHH
Q 010008 464 IHEG 467 (520)
Q Consensus 464 i~~~ 467 (520)
|++-
T Consensus 421 l~~~ 424 (432)
T 3ei9_A 421 FKQL 424 (432)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 134
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.91 E-value=1.4e-22 Score=211.89 Aligned_cols=307 Identities=17% Similarity=0.152 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhc--cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCC
Q 010008 80 EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN--KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 157 (520)
Q Consensus 80 ~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~--~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~ 157 (520)
++++.+.++.+++...++.+++.|. ..|+++|...... .+. +..+.. | +....+.+| +++++++|.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~n~--~~vl~a~~~~~~~~~~~~-~~~~~~-y-~~~~~~~Le----~~lA~l~g~e~a 77 (409)
T 3jzl_A 7 AIRKKVETQIDDLQNKTDEIAEFNQ--AKVLDAFQENKVSDFHFH-PSTGYG-Y-DDEGRDTLE----RVYATVFKTEAA 77 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGGC-CCCTTC-T-TCHHHHHHH----HHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHhhhhhhccC-CCcCCC-C-ChhHHHHHH----HHHHHHhCCCcE
Confidence 4566666666767677777877774 6788888775422 111 111111 2 223355666 678899999862
Q ss_pred CCceeee--cCChHHHHHHHHHhhCCCCCEEEEcC-CCCCccccccccc--cccccccccceEEEEEcccCCCCCCCCHH
Q 010008 158 KWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVDYD 232 (520)
Q Consensus 158 ~~~~~V~--~~sGs~A~~~~l~all~pGD~Vl~~~-~~~~ghls~g~~~--~~~~v~~~g~~~~~v~~~~d~~~~~iD~d 232 (520)
.|. ++||++||.+++.++++|||+|++.+ +.|++.....-.. ....+...|. +++.++++ +++.+|++
T Consensus 78 ----lv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~--~~~~v~~~-~~g~~d~e 150 (409)
T 3jzl_A 78 ----LVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI--GYSSVPLL-ENGDVDFP 150 (409)
T ss_dssp ----EEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC--EEEECCCC-TTSCCCHH
T ss_pred ----EEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC--EEEEeCCC-CCCCcCHH
Confidence 443 68899999999999999999999998 7776543100000 0001223354 66777776 46889999
Q ss_pred HHHHHhhhcCCcEEEEcC----CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC-cccEEEecc
Q 010008 233 MLEKTAILFRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT 303 (520)
Q Consensus 233 ~le~~i~~~~pklIi~~~----s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~ 303 (520)
++++++++ +||+|++.. ++||+ ..|+++|+++|++ +|+++++|++|..+... ..|.. ++|++++|+
T Consensus 151 ~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~----~~p~~~g~Div~~S~ 225 (409)
T 3jzl_A 151 RIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEY----QEPPEVGADIIAGSL 225 (409)
T ss_dssp HHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSS----CCSGGGTCSEEEEET
T ss_pred HHHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccccccc----CCccccCCeEEEECc
Confidence 99999987 899999987 77776 6689999999999 99999999997654321 23444 689999999
Q ss_pred CcccCC---CCceEEEeeCCCcchhhHHHhhccc-CCCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008 304 HKSLRG---PRGGMIFFKKDPVLGVELESAINNA-VFPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 377 (520)
Q Consensus 304 hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~-~~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l 377 (520)
||++.| +.||++++++ ++.+++... ..++. ..++......++..+++. ...+.++..+|++.+
T Consensus 226 sK~lgg~~~~~GG~v~~~~------~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~-----~~~r~~~~~~~a~~l 294 (409)
T 3jzl_A 226 IKNPGGGLAKTGGYIAGKE------ALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFL-----APHVTAQAIKGARFT 294 (409)
T ss_dssp TSGGGTTTCSSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred cccCCccCCceEEEEEeCH------HHHHHHHHHhccccccccccccHHHHHHHHHHHhh-----HHHHHHHHHHHHHHH
Confidence 999976 5689999987 677766542 22222 122222111222223332 246778889999999
Q ss_pred HHHHHHCCCEEecCCCCCe-----eEEEEecCCCCCHHHHHHHHhhcCe
Q 010008 378 ASRLVELGYKLVSGGSDNH-----LVLVDLRPMGIDGARVEKILDMASI 421 (520)
Q Consensus 378 ~~~L~~~G~~v~~~gt~~~-----~~~vd~~~~g~~~~~~~~~L~~~gI 421 (520)
++.|++.|+++..+ .++ ++.+.+.. ......+.+.|+....
T Consensus 295 a~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~-~~~~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 295 AAMLAEFGVEADPV--WDAPRTDLIQSVSFHN-KEKMVAFAQAIQAASP 340 (409)
T ss_dssp HHHHHHTTCEEESC--TTSCCSSSCCEEECSC-HHHHHHHHHHHHHTSS
T ss_pred HHHHHhCCCcccCC--CCCCCccEEEEEEeCC-HHHHHHHHHHHHhcCc
Confidence 99999999988543 223 44455531 1112335556666543
No 135
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.90 E-value=1.3e-22 Score=217.82 Aligned_cols=328 Identities=12% Similarity=0.044 Sum_probs=211.0
Q ss_pred ChHHHHHHHhhhhhcc---CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH-HHHHHHHHh
Q 010008 105 TSRAVMEAVGSCLTNK---YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTA 178 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~---y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs-~A~~~~l~a 178 (520)
.|+.++++....+.+. ...+|+. ......+++...+++.+.+|.+ ++ +|.+++|+ +|+..++.+
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~------~~G~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~G~~~al~~~~~~ 176 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSH------SQGIHGLRDAIASGIASRDGFPANAD----DIFLTDGASPGVHLMMQL 176 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCC------TTCCHHHHHHHHHHHHHHHSSCCCGG----GEEEESSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCC------CcChHHHHHHHHHHHHhhcCCCCCcc----cEEEcCCHHHHHHHHHHH
Confidence 5666777666665542 1223332 2223456666667787777754 43 34456655 899999999
Q ss_pred hC-CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhc-----CCcEEEEcCC
Q 010008 179 IL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGAS 251 (520)
Q Consensus 179 ll-~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~-----~pklIi~~~s 251 (520)
++ +|||+|++++|.|.++.. .+...|. +++.|+++++ ++.+|+++|++++++. ++|+|++..+
T Consensus 177 l~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p 246 (500)
T 3tcm_A 177 LIRNEKDGILVPIPQYPLYSA--------SIALHGG--ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINP 246 (500)
T ss_dssp HCCSTTEEEEEEESCCTHHHH--------HHHHTTC--EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred HcCCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 98 899999999998865431 2344555 6677777754 4689999999999864 6899988888
Q ss_pred CCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccccc-ccCCCC----------C-ccc-EEEeccCccc---CCC
Q 010008 252 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPF----------K-YCD-VVTTTTHKSL---RGP 310 (520)
Q Consensus 252 ~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~-~~~~p~----------~-~aD-iv~~S~hK~l---~Gp 310 (520)
+||+ .++ +++|.++|+++|+++++|++|.. +++.+ ....++ . ..+ +++.|+||++ +|.
T Consensus 247 ~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~ 325 (500)
T 3tcm_A 247 GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQE-NIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGK 325 (500)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGG
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccc-cccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCcc
Confidence 9987 444 66777779999999999999654 33322 111111 1 112 6678999988 589
Q ss_pred CceEEEe---eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH----------hcCchhHHHHHHHHHHHHHH
Q 010008 311 RGGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH----------AQSPEFKVYQNKVVSNCRAL 377 (520)
Q Consensus 311 rgG~I~~---~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~----------~~~~~~~~~~~~i~~na~~l 377 (520)
|+||+++ ++ ++.+.+..... ...+++....++++.+++. .. .+..+..+++.++++.+
T Consensus 326 R~G~~~~~~~~~------~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l 396 (500)
T 3tcm_A 326 RGGYFEITGFSA------PVREQIYKIAS--VNLCSNITGQILASLVMNPPKASDESYASYK-AEKDGILASLARRAKAL 396 (500)
T ss_dssp CCEEEEEESCCT------THHHHHHHHHH--TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCH------HHHHHHHHHHh--cccCCCHHHHHHHHHHhcCccccchhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999998 55 55555543221 1223344444444444431 11 22355667788889999
Q ss_pred HHHHHHC-CCEEecCCCCCeeEEEEecCC----------CCCHHH--HHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008 378 ASRLVEL-GYKLVSGGSDNHLVLVDLRPM----------GIDGAR--VEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444 (520)
Q Consensus 378 ~~~L~~~-G~~v~~~gt~~~~~~vd~~~~----------g~~~~~--~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~ 444 (520)
.+.|.+. |+.+..+ ..+.+.|+++... +.+.+. +.++|++.||.+..+..++. ...++++|+++
T Consensus 397 ~~~L~~~~g~~~~~~-~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~--~~g~~~iRis~ 473 (500)
T 3tcm_A 397 EHAFNKLEGITCNEA-EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ--VPGTWHFRCTI 473 (500)
T ss_dssp HHHHHTSTTEECCCC-CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC--CTTCCBEEEES
T ss_pred HHHHhcCCCcEEecC-CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC--CCCCCEEEEEE
Confidence 9999885 8887654 2345555444311 222222 45788899999954332221 12456899987
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 445 PAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 445 ~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
. .++++++++++.|.++++..
T Consensus 474 ~------~~~e~i~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 474 L------PQEDKIPAVISRFTVFHEAF 494 (500)
T ss_dssp C------SCTTTHHHHHHHHHHHHHHH
T ss_pred C------CCHHHHHHHHHHHHHHHHHH
Confidence 5 34689999999998887643
No 136
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.90 E-value=7.5e-23 Score=214.33 Aligned_cols=357 Identities=13% Similarity=0.059 Sum_probs=221.4
Q ss_pred ccccChHHHHHHHHHHHHhhccceEecCCCC-----ChHHHHHHHh--hhhhcc-CCCCCCCCCCCCcchhHHHHHHHHH
Q 010008 74 LGEADPEVCEIITKEKERQFKSLELIASENF-----TSRAVMEAVG--SCLTNK-YSEGLPGKRYYGGNEYIDELETLCQ 145 (520)
Q Consensus 74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen~-----~~~~V~ea~~--s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~ 145 (520)
+....+.++..+.+-.. ....|+|..+... +++.+++++. ..+.+. ...+||+ ......+++
T Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~-----~~~g~~~lr---- 76 (423)
T 3ez1_A 7 SRPALDLARQAYEAFKA-RGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPG-----GVAGLPSAR---- 76 (423)
T ss_dssp CHHHHHHHHHHHHHHHH-HTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCS-----CTTCCHHHH----
T ss_pred HHHHHHHHHHHHHHhhc-CCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCC-----CCCChHHHH----
Confidence 44555666665544322 3466888776543 4567888875 443311 1123421 112123444
Q ss_pred HHHHHHcCCCCCCCceeeecCChH-HHHH--HHHHhhCC--C---------CCEEEEcCCCCCccccccccccccccccc
Q 010008 146 KRALAAFNLDENKWGVNVQPLSGS-PANF--EVYTAILK--P---------HDRIMGLDLPHGGHLSHGFMTPKRRVSGT 211 (520)
Q Consensus 146 ~~~~~lfg~~~~~~~~~V~~~sGs-~A~~--~~l~all~--p---------GD~Vl~~~~~~~ghls~g~~~~~~~v~~~ 211 (520)
+.++++++++++ +|.+++|+ +++. +++.++++ | ||+|++.+|.|.++.. .+...
T Consensus 77 ~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~ 144 (423)
T 3ez1_A 77 ALFAGYLDVKAE----NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL--------LLQTL 144 (423)
T ss_dssp HHHHHHTTSCGG----GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH--------HHHHH
T ss_pred HHHHHHhCCChh----hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH--------HHHHc
Confidence 677888999876 45557776 7887 78888888 8 5999999998755421 23344
Q ss_pred cceEEEEEcccCCCCCCCCHHHHHHHhh-hcCCcEEEEc-CCCCCC--CCCHH---HHHHHH-HHhCCEEEEechhhccc
Q 010008 212 SIYFESMPYRLDESTGLVDYDMLEKTAI-LFRPKLIIAG-ASAYPR--DFDYP---RMRQIA-DAVGALLMMDMAHISGL 283 (520)
Q Consensus 212 g~~~~~v~~~~d~~~~~iD~d~le~~i~-~~~pklIi~~-~s~~p~--~~d~~---~i~~ia-~~~g~~li~D~Ah~~gl 283 (520)
|. +++.++++.+ .+|+++|+++++ ..++|+|++. .++||+ .++.+ +|+++| +++|+++|+|++|....
T Consensus 145 g~--~~~~v~~~~~--g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~ 220 (423)
T 3ez1_A 145 GF--ELLTVDMQSD--GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHH 220 (423)
T ss_dssp TC--EEEEEEEETT--EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCB
T ss_pred CC--EEEeccCCCC--CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhh
Confidence 54 6667777643 499999999995 2378998765 678886 66665 788888 89999999999965322
Q ss_pred ccc-cccC--CC--------CCcccEEEeccCcc-cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHH
Q 010008 284 VAA-SVVA--DP--------FKYCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 351 (520)
Q Consensus 284 i~~-~~~~--~p--------~~~aDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaal 351 (520)
... +..+ +. ....++++.|+||+ ++|+|.|+++.++ ++.+.+.........+.+...+. +.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-a~ 293 (423)
T 3ez1_A 221 LVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE------DNIRWLSKYLGAQSIGPNKVEQA-RH 293 (423)
T ss_dssp CCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH------HHHHHHHHHHHHSCSCCCHHHHH-HH
T ss_pred cCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH------HHHHHHHHHHhhhccCCCHHHHH-HH
Confidence 222 1111 11 11345889999995 5789999999987 66666544322222233333333 33
Q ss_pred HHHHHHhcC---chhHHHHHHHHHHHHHHHHHHHH----CC--CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeE
Q 010008 352 AVCLKHAQS---PEFKVYQNKVVSNCRALASRLVE----LG--YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASIT 422 (520)
Q Consensus 352 a~al~~~~~---~~~~~~~~~i~~na~~l~~~L~~----~G--~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~ 422 (520)
..+++.... ...++..+.+.++++.+.+.|.+ .| +.+..+ ....++++++... +.+.+.+.|.+.||.
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gv~ 370 (423)
T 3ez1_A 294 VKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLP-KGGYFISLDTAEP--VADRVVKLAEAAGVS 370 (423)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCC-SBSSCEEEEESSS--CHHHHHHHHHHTTEE
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCC-CccEEEEEECCCC--cHHHHHHHHHHCCcE
Confidence 334543111 12244445555666666666654 44 555443 2355678887542 678888999999999
Q ss_pred EcC-CCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 423 LNK-NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 423 v~~-~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
+.. +...+......+++|||++... +++++++.++.|.++++..
T Consensus 371 v~~~g~~~~~~~~~~~~~iRis~~~~-----~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 371 LTPAGATYPAGQDPHNRNLRLAPTRP-----PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp CCCTTTTSSTTCCSSSCEEEECCSSS-----CHHHHHHHHHHHHHHHHHH
T ss_pred EecCcccccCCCCCCCCeEEEEcCCC-----CHHHHHHHHHHHHHHHHHH
Confidence 954 2111111112467899997533 4899999999999988754
No 137
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.90 E-value=5.7e-23 Score=215.58 Aligned_cols=358 Identities=15% Similarity=0.051 Sum_probs=216.5
Q ss_pred hhhccccChHHHHHHHHHHHHhhccceEecCCCC-----ChHHHHHHHhhhhh--cc-CCCCCCCCCCCCcchhHHHHHH
Q 010008 71 DYSLGEADPEVCEIITKEKERQFKSLELIASENF-----TSRAVMEAVGSCLT--NK-YSEGLPGKRYYGGNEYIDELET 142 (520)
Q Consensus 71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~-----~~~~V~ea~~s~l~--~~-y~~G~p~~ryy~g~~~~d~lE~ 142 (520)
...+......++....+... +...|+|..+++. +++.+++++...+. .. ...+|+.. .| ..+++
T Consensus 11 ~~~l~~~~~~~~~~~~~l~~-~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~---~G---~~~lr- 82 (422)
T 3d6k_A 11 AARLAQVREEVTAKYAELKA-KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGL---LG---IADIR- 82 (422)
T ss_dssp -------CHHHHHHHHHHHH-TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCS---SC---CHHHH-
T ss_pred HHHHHhhHHHHHHHHHHHhc-cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCC---CC---CHHHH-
Confidence 34455566667766544332 3456888888873 44567777654421 11 12244431 12 23344
Q ss_pred HHHHHHHHHcCCCCCCCceeeecCChH-HHH--HHHHHhhCCC------------CCEEEEcCCCCCccccccccccccc
Q 010008 143 LCQKRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILKP------------HDRIMGLDLPHGGHLSHGFMTPKRR 207 (520)
Q Consensus 143 ~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~--~~~l~all~p------------GD~Vl~~~~~~~ghls~g~~~~~~~ 207 (520)
+.++++++++++ +|.+++|+ +++ .+++.++.++ ||+|++.+|.|.++.. .
T Consensus 83 ---~~ia~~~~~~~~----~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~--------~ 147 (422)
T 3d6k_A 83 ---ELWAEALGLPAD----LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFT--------I 147 (422)
T ss_dssp ---HHHHHHHTCCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------H
T ss_pred ---HHHHHHhCCChh----HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHH--------H
Confidence 567777898876 45567777 676 4566777666 3589999998765421 2
Q ss_pred cccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE-EcCCCCCC--CCCHH---HHHHHHH-HhCCEEEEechhh
Q 010008 208 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII-AGASAYPR--DFDYP---RMRQIAD-AVGALLMMDMAHI 280 (520)
Q Consensus 208 v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi-~~~s~~p~--~~d~~---~i~~ia~-~~g~~li~D~Ah~ 280 (520)
+...|. +++.+++++ ++ +|++++++++++.++|+|+ ++.++||+ .++.+ +|.++|+ ++|++||+|++|.
T Consensus 148 ~~~~g~--~~~~v~~~~-~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~ 223 (422)
T 3d6k_A 148 TEHFGF--EMINVPMTD-EG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYA 223 (422)
T ss_dssp HHHHTC--EEEEEEEET-TE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTT
T ss_pred HHHcCC--EEEecCCCC-CC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcc
Confidence 334454 666777764 33 9999999999755789888 56788886 66665 6777777 8999999999976
Q ss_pred c-ccccccccCCCC---------CcccEEEeccCcc-cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHH
Q 010008 281 S-GLVAASVVADPF---------KYCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG 349 (520)
Q Consensus 281 ~-gli~~~~~~~p~---------~~aDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~ia 349 (520)
. ++...+....++ ...++++.|+||+ ++|+|.||+++++ ++.+.+.........+.+.. ..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~------~l~~~l~~~~~~~~~~~~~~-~q~ 296 (422)
T 3d6k_A 224 LHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK------ENIEWYASHANVRGIGPNKL-NQL 296 (422)
T ss_dssp TCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHHHHHHCSCCCHH-HHH
T ss_pred ccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH------HHHHHHHHHHHhhcCCCCHH-HHH
Confidence 3 333222111122 1346889999996 4778999999987 66666554322222233333 333
Q ss_pred HHHHHHHHhc--CchhHHHHHHHHHHHHHHHHHHHH----CC-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeE
Q 010008 350 GLAVCLKHAQ--SPEFKVYQNKVVSNCRALASRLVE----LG-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASIT 422 (520)
Q Consensus 350 ala~al~~~~--~~~~~~~~~~i~~na~~l~~~L~~----~G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~ 422 (520)
+...+|+... ....++..+.+.++++.+.+.|.+ .| +.+..+ ...+++|+++... +.+.+.+.|.++||.
T Consensus 297 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gV~ 373 (422)
T 3d6k_A 297 AHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSP-TGGYFISVDVVPG--TASRVVELAKEAGIA 373 (422)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCC-SBSSCEEEEESTT--CHHHHHHHHHHTTEE
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCC-CcceEEEEECCCC--CHHHHHHHHHHCCeE
Confidence 3333443200 012344456666677777777765 23 555443 2356678888532 567788899999999
Q ss_pred EcCC-CCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 423 LNKN-SVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 423 v~~~-~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+..+ ...+.......+++||++.. .++++++++++.|.++++.
T Consensus 374 v~~~g~~f~~~~~~~~~~iRis~~~-----~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 374 LTGAGSSFPLHNDPNNENIRLAPSL-----PPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp CCCTTTTSGGGCCTTSCEEEECCSS-----SCHHHHHHHHHHHHHHHHH
T ss_pred EEcCccccCCCCCCCCCeEEEecCC-----CCHHHHHHHHHHHHHHHHH
Confidence 9542 10100000135789999764 2489999999999988764
No 138
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.90 E-value=7.8e-23 Score=229.15 Aligned_cols=298 Identities=14% Similarity=0.080 Sum_probs=208.6
Q ss_pred HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008 144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 222 (520)
Q Consensus 144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~ 222 (520)
+++.+++++|.+. .+.+++|+ +||.+++.++++|||+|++..+.|.+.+. .+...|. +++.++.
T Consensus 210 ~ee~la~l~G~d~-----~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--------~~~~~G~--~~v~v~~ 274 (755)
T 2vyc_A 210 SEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLMLTGA--KPVYMVP 274 (755)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHHCC--EEEEECC
T ss_pred HHHHHHHHhCCCc-----eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCC--EEEEEeC
Confidence 4478899999974 24457887 89999999999999999999988755431 2334565 5556555
Q ss_pred CCCC----CCC-----CHHHHHHHhhhc-CC--------cEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhccc
Q 010008 223 DEST----GLV-----DYDMLEKTAILF-RP--------KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGL 283 (520)
Q Consensus 223 d~~~----~~i-----D~d~le~~i~~~-~p--------klIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gl 283 (520)
+.++ +.+ |+++|++++++. ++ ++++++++++.+ ..|+++|.++|+++|++|++|+||+.++
T Consensus 275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhc
Confidence 4222 235 999999998752 23 488887776544 7899999999999999999999997654
Q ss_pred cccccc--CCCCCc--ccE------EEeccCcccCCCC-ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHH
Q 010008 284 VAASVV--ADPFKY--CDV------VTTTTHKSLRGPR-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLA 352 (520)
Q Consensus 284 i~~~~~--~~p~~~--aDi------v~~S~hK~l~Gpr-gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala 352 (520)
...+.. ..++.+ +|+ +++|+||+|+||+ +|+++++++.... + ..+++........++|+...++++.
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i-~-~~~~~~~~~~~~s~sp~~~~iaal~ 432 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAI-N-FSRFNQAYMMHATTSPLYAICASND 432 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCC-C-HHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCccccc-C-HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 433221 223234 676 9999999999998 4788887630000 0 1122222112235788999999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CC---------CEEecCC------------------------------
Q 010008 353 VCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LG---------YKLVSGG------------------------------ 392 (520)
Q Consensus 353 ~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G---------~~v~~~g------------------------------ 392 (520)
+|++.+...+.+++.++..++++.+++.|++ .| ++++.+.
T Consensus 433 aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (755)
T 2vyc_A 433 VAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVM 512 (755)
T ss_dssp HHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhcc
Confidence 9998876554677889999999999999977 35 5554321
Q ss_pred -------------C-----CCeeEEEEecCC---------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccC
Q 010008 393 -------------S-----DNHLVLVDLRPM---------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP 445 (520)
Q Consensus 393 -------------t-----~~~~~~vd~~~~---------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~ 445 (520)
. |...+.+++... |+++..+.+.|+++||.+.+. ..+.+|+.++
T Consensus 513 ~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~---------~~~~v~~~~~ 583 (755)
T 2vyc_A 513 HPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT---------TDFQIMFLFS 583 (755)
T ss_dssp CTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE---------CSSEEEEECC
T ss_pred CcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec---------CCCeEEEEEC
Confidence 1 223445555433 345589999999999998652 2567898655
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 446 AMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 446 ~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
.|.++++++++++.|.++.+..
T Consensus 584 ----~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 584 ----MGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp ----TTCCTTTTHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHHHHhh
Confidence 4556899999999998876543
No 139
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.90 E-value=1.7e-22 Score=205.70 Aligned_cols=322 Identities=12% Similarity=0.081 Sum_probs=207.9
Q ss_pred cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008 95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 173 (520)
Q Consensus 95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~ 173 (520)
.|.|..+++ .+++.|++++...+.+ |..+ ++.. .+.+.+++++++++|++++++ +...+|++|+.
T Consensus 15 ~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~------~g~~----~~~~~~~~~l~~~~g~~~~~v---~~~~g~t~a~~ 80 (359)
T 1svv_A 15 PYSFVNDYSVGMHPKILDLMARDNMT-QHAG------YGQD----SHCAKAARLIGELLERPDADV---HFISGGTQTNL 80 (359)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTTC-CCCS------TTCS----HHHHHHHHHHHHHHTCTTSEE---EEESCHHHHHH
T ss_pred eEEecCCCcCCCCHHHHHHHHHHHhh-cccc------cccc----HHHHHHHHHHHHHhCCCCccE---EEeCCchHHHH
Confidence 466655443 5789999999987752 3221 1112 333445588999999877521 33345669999
Q ss_pred HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc------CCcEEE
Q 010008 174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPKLII 247 (520)
Q Consensus 174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~------~pklIi 247 (520)
.++.++++|||+|++.++.|.++.... .+...|. +++.++.+ ++.+|+++|++.+++. ++++|+
T Consensus 81 ~~~~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~g~--~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~ 150 (359)
T 1svv_A 81 IACSLALRPWEAVIATQLGHISTHETG------AIEATGH--KVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVY 150 (359)
T ss_dssp HHHHHHCCTTEEEEEETTSHHHHSSTT------HHHHTTC--CEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEE
T ss_pred HHHHHHhCCCCEEEEcccchHHHHHHH------HHhcCCC--eeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEE
Confidence 999999999999999999876553210 1233454 56666654 5789999999999873 289998
Q ss_pred EcCCCCCC-CCC---HHHHHHHHHHhCCEEEEechh---hcccccccccCCCC---CcccEEEeccCcccCCCCc-eEEE
Q 010008 248 AGASAYPR-DFD---YPRMRQIADAVGALLMMDMAH---ISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIF 316 (520)
Q Consensus 248 ~~~s~~p~-~~d---~~~i~~ia~~~g~~li~D~Ah---~~gli~~~~~~~p~---~~aDiv~~S~hK~l~Gprg-G~I~ 316 (520)
++.+++.+ ..+ +++|+++|+++|+++|+|++| ..|... .....+ ..+|+++.|+||+ .+|.+ |+++
T Consensus 151 ~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~ 227 (359)
T 1svv_A 151 ISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPV--NDLTLADIARLTDMFYIGATKA-GGMFGEALII 227 (359)
T ss_dssp EESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT--CCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEE
T ss_pred EEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC--cchhhhhhhhcCCEEEEecccC-CCCCceEEEE
Confidence 88774222 666 889999999999999999997 333221 111111 1478999999997 56766 8998
Q ss_pred eeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC
Q 010008 317 FKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN 395 (520)
Q Consensus 317 ~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~ 395 (520)
+++ ++.+.+.... ..+...+......++++.+ +...++++..+++.++++.+.+.|+..|+++..+. ..
T Consensus 228 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~ 297 (359)
T 1svv_A 228 LND------ALKPNARHLIKQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS-AS 297 (359)
T ss_dssp CSG------GGCTTHHHHHHHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC-SS
T ss_pred Ecc------cHHHHHHHHHhcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHhccCCeEEccCC-cc
Confidence 877 4444443211 0111111122222333222 22334577888899999999999955788876442 34
Q ss_pred eeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 396 HLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 396 ~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+++++++. .++.+.|.+. ||.+- +.. +..+++|||+.+.. .+++|++++++.|+++++
T Consensus 298 ~~~~~~~~------~~~~~~l~~~~gi~v~----~~~--~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 298 NQLFPILE------NTMIAELNNDFDMYTV----EPL--KDGTCIMRLCTSWA----TEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp SEECBEEE------HHHHHHHTTTEECEEE----EEE--TTTEEEEEEECCTT----CCHHHHHHHHHHHHHC--
T ss_pred ceEEEEcC------HHHHHHHHHhcCEEEE----ecc--cCCCceEEEEccCc----CCHHHHHHHHHHHHHHHh
Confidence 55555553 3556666666 99981 110 11356899986543 358999999999988764
No 140
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.90 E-value=6.9e-23 Score=209.41 Aligned_cols=331 Identities=11% Similarity=0.049 Sum_probs=206.2
Q ss_pred cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008 95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 174 (520)
Q Consensus 95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~ 174 (520)
.-.|..+.++..+.+++++...+. +..+..+|+..+...+++ +++++++|.+. .|.+++|++|+..
T Consensus 12 ~~~l~~~~~p~~~~~~~~~~~~~~-----~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~~ 77 (357)
T 3lws_A 12 TTGQISGHGKRNVGVLKTAFAAVA-----DEMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQV 77 (357)
T ss_dssp CSEESSBSSCCBHHHHHHHHTTSC-----TTCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHH
T ss_pred hcccccCCCCCCHHHHHHHHHHhh-----cccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHH
Confidence 344666777776766666543221 111223455555566666 67888999864 3556899999999
Q ss_pred HHHhhCCCCC--EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008 175 VYTAILKPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252 (520)
Q Consensus 175 ~l~all~pGD--~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~ 252 (520)
++.++++||| .|++.++.|...+..+ ......|. +++.++. +++.+|+++|+++. ++++|+++.++
T Consensus 78 al~~~~~~gd~~~vi~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~~---~~~~v~~~~p~ 145 (357)
T 3lws_A 78 ALRIWSDETDNRTVAYHPLCHLEIHEQD-----GLKELHPI--ETILVGA--ADRLMTLDEIKALP---DIACLLLELPQ 145 (357)
T ss_dssp HHHHHHHHHTCCEEEECTTCHHHHSSTT-----HHHHHSSC--EEEECSC--TTSCCCHHHHHTCC---SCSEEEEESSB
T ss_pred HHHHHhhcCCCcEEEecccceeeeeccc-----hhhhccCc--EEEEecC--CCCCcCHHHHhcCc---CcceEEEEccc
Confidence 9999999999 6666554432221100 01122343 6666553 46789999999873 48999999888
Q ss_pred CCC---CC---CHHHHHHHHHHhCCEEEEechhhcccc-cccccCCCC-CcccEEEeccCcccCCCCceEEEeeCCCcch
Q 010008 253 YPR---DF---DYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG 324 (520)
Q Consensus 253 ~p~---~~---d~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~ 324 (520)
||+ .+ ++++|+++|+++|++||+|++|..+.. ..+.....+ .+.|++++|+||++.||.||+++.++
T Consensus 146 np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~----- 220 (357)
T 3lws_A 146 REIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPA----- 220 (357)
T ss_dssp GGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECH-----
T ss_pred ccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCH-----
Confidence 753 44 488999999999999999999763221 111111111 24788999999999899999999887
Q ss_pred hhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEE
Q 010008 325 VELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVD 401 (520)
Q Consensus 325 ~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd 401 (520)
++.+.+.... +.+.....+....+++ .+++... +..++..++++.+.+.|.+. |+++.......+++|++
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~ 293 (357)
T 3lws_A 221 -AFCQTARIWKRRYGGDLISLYPYIVSAD-YYYELRK-----DRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLH 293 (357)
T ss_dssp -HHHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHHT-----TCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEE
T ss_pred -HHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEE
Confidence 6666554321 1111111222222222 3455422 22345677788999999885 88874322345677888
Q ss_pred ecCCC-CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 402 LRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 402 ~~~~g-~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
+...+ .+..++.+.|.++||.+..+..++ + ..+.+|+++.... ...+++++++..+.|.+++
T Consensus 294 ~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~---~-~~~~~r~~i~~~~-~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 294 FDGQAADISPKLEQVQEETGLGFVGYLVDK---D-GYCSTEISVGDAY-GELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EESCHHHHHHHHHHHHHHHCEESCSCCEEC---S-SEEEEEEEBCTTG-GGSCHHHHHHHHHHHHHHC
T ss_pred ecCChHHHHHHHHHHHHhcCeEEecccccC---C-CceEEEEEecchh-hhcCHHHHHHHHHHHHHhc
Confidence 76421 124667888999999995432211 1 2347898654221 2246788888887776654
No 141
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=217.76 Aligned_cols=329 Identities=11% Similarity=0.023 Sum_probs=209.3
Q ss_pred CChHHHHHHHhhhhhccC---CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-C--CCCCCceeeecCChH-HHHHHHH
Q 010008 104 FTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFN-L--DENKWGVNVQPLSGS-PANFEVY 176 (520)
Q Consensus 104 ~~~~~V~ea~~s~l~~~y---~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg-~--~~~~~~~~V~~~sGs-~A~~~~l 176 (520)
..|..+.+++...+.+.. ..+|+.. .| ...+++...+++.+.+| + +++ +|.+++|+ +|+..++
T Consensus 101 ~~P~~~~~~~~~~l~~~~~~~~~~Y~~~---~G---~~~lr~~ia~~~~~~~gG~~~~~~----~i~~t~G~~~ai~~~~ 170 (498)
T 3ihj_A 101 SFPEDAKKRARRILQACGGNSLGSYSAS---QG---VNCIREDVAAYITRRDGGVPADPD----NIYLTTGASDGISTIL 170 (498)
T ss_dssp SSCHHHHHHHHHHHHHC----------C---CS---CHHHHHHHHHHHHHHTTTCCCCGG----GEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCCCCC---CC---HHHHHHHHHHHHHHhcCCCCCCcc----cEEEcCCHHHHHHHHH
Confidence 345666666665555321 1233321 12 33555556677888875 5 444 45567776 8999999
Q ss_pred HhhCCCCC----EEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhc----CCcEEE
Q 010008 177 TAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF----RPKLII 247 (520)
Q Consensus 177 ~all~pGD----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~----~pklIi 247 (520)
.+++++|| +|++++|.|.++. ..+...|. +++.|+++++ ++.+|+++|++++++. ++|+|+
T Consensus 171 ~~l~~~gd~~~d~Vlv~~p~y~~~~--------~~~~~~g~--~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~ 240 (498)
T 3ihj_A 171 KILVSGGGKSRTGVMIPIPQYPLYS--------AVISELDA--IQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLC 240 (498)
T ss_dssp HHHCCCCGGGSEEEEEEESCCTHHH--------HHHHHTTC--EEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHcCCCCCCCCEEEEeCCCchhHH--------HHHHHcCC--EEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEE
Confidence 99999986 9999999876542 12344555 6777777754 4689999999999874 589999
Q ss_pred EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc-cCCCCCc------------c-cEEEeccCccc-
Q 010008 248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFKY------------C-DVVTTTTHKSL- 307 (520)
Q Consensus 248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~~~------------a-Div~~S~hK~l- 307 (520)
+..++||+ .. ++++|.++|+++|++||+|++|. .+++.+. ...++.. . -+++.|+||++
T Consensus 241 l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 319 (498)
T 3ihj_A 241 IINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ-DNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM 319 (498)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT
T ss_pred EECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc-ccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccc
Confidence 88999987 44 46779999999999999999964 4443321 1112210 1 15778999998
Q ss_pred --CCCCceEEEe---eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH----------hcCchhHHHHHHHHH
Q 010008 308 --RGPRGGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH----------AQSPEFKVYQNKVVS 372 (520)
Q Consensus 308 --~GprgG~I~~---~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~----------~~~~~~~~~~~~i~~ 372 (520)
+|.|+||++. ++ ++.+.+...... ...++....++++.+++. .. .+.....+++.+
T Consensus 320 G~~G~R~G~~~~~~~~~------~l~~~l~~~~~~--~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~-~~~~~~~~~l~~ 390 (498)
T 3ihj_A 320 GECGYRGGYMEVINLHP------EIKGQLVKLLSV--RLCPPVSGQAAMDIVVNPPVAGEESFEQFS-REKESVLGNLAK 390 (498)
T ss_dssp CCSSSCCEEEEEESCCH------HHHHHHHHHHHH--SCCCCHHHHHHHHHHTCCCCTTSTTHHHHH-HHHHHHHHHHHH
T ss_pred cCcccceEEEEEecCCH------HHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCccCcccHHHHH-HHHHHHHHHHHH
Confidence 5899999984 43 566555433211 122233333444433321 00 112345577788
Q ss_pred HHHHHHHHHHHC-CCEEecCCCCCeeEEEEecC----------CCCCHHH--HHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008 373 NCRALASRLVEL-GYKLVSGGSDNHLVLVDLRP----------MGIDGAR--VEKILDMASITLNKNSVPGDKSALVPGG 439 (520)
Q Consensus 373 na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~----------~g~~~~~--~~~~L~~~gI~v~~~~~Pg~~~~~~~~g 439 (520)
+++.+.+.|.+. |+.+..+ ..+.+.|+++.. .+++.++ +.++|++.||.+..+..++. +..+++
T Consensus 391 ~~~~l~~~L~~~~g~~~~~p-~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~--~~~~~~ 467 (498)
T 3ihj_A 391 KAKLTEDLFNQVPGIHCNPL-QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQ--REGTYH 467 (498)
T ss_dssp HHHHHHHHHHTSTTEECCCC-CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCC--CTTCCB
T ss_pred HHHHHHHHHhcCCCcEecCC-CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC--CCCCCE
Confidence 899999999885 8887654 234555655531 2445544 57788899999854432221 124568
Q ss_pred EEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
+|+++. .++++++++++.|.++++..
T Consensus 468 ~Ris~~------~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 468 FRMTIL------PPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp EEEECC------SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC------CCHHHHHHHHHHHHHHHHHH
Confidence 999872 45899999999998887643
No 142
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.90 E-value=9.9e-23 Score=212.56 Aligned_cols=344 Identities=10% Similarity=0.009 Sum_probs=209.8
Q ss_pred hccceEecCCCCCh----HHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCcee
Q 010008 93 FKSLELIASENFTS----RAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVN 162 (520)
Q Consensus 93 ~~~i~Liasen~~~----~~V~ea~~s~l~~~y----~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~ 162 (520)
.+.|+|..+.+... +.+.+++...+.+.. ..+|+. .....++++...+++.+.+|.. ++ +
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~----~ 100 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDG------PQGKTALLNALAVLLRETLGWDIEPQ----N 100 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTC------TTSHHHHHHHHHHHHHHHHCCCCCGG----G
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCC------CCCcHHHHHHHHHHHHHHhCCCCCcc----c
Confidence 36688877765442 456666666554321 013332 2224566666666777767654 44 4
Q ss_pred eecCChH-HHHHHHHHhhCCCCC-----EEEEc-CCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHH
Q 010008 163 VQPLSGS-PANFEVYTAILKPHD-----RIMGL-DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 235 (520)
Q Consensus 163 V~~~sGs-~A~~~~l~all~pGD-----~Vl~~-~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le 235 (520)
|.+++|+ +|+.+++.++++||| +|+++ +|.|.++...... .-.+.+....+..++.+..++.+|+++++
T Consensus 101 i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 176 (417)
T 3g7q_A 101 IALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLE----DDLFVSARPNIELLPEGQFKYHVDFEHLH 176 (417)
T ss_dssp EEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC---------CCEEECCCEEEEEGGGEEEEECCGGGCC
T ss_pred EEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccc----hhhhccccCcccccCCcccccccCHHHhc
Confidence 5556666 999999999999998 89987 8877554321100 00111222234444332113568999887
Q ss_pred HHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccc---ccccccCCCCCcccEEEeccCccc
Q 010008 236 KTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGL---VAASVVADPFKYCDVVTTTTHKSL 307 (520)
Q Consensus 236 ~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gl---i~~~~~~~p~~~aDiv~~S~hK~l 307 (520)
+++ ++++|+++.++||+ .++ +++|.++|+++|+++|+|++|.... ...+..+ .....++++.|+||++
T Consensus 177 --~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~ 252 (417)
T 3g7q_A 177 --IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP-LWNPNIILCMSLSKLG 252 (417)
T ss_dssp --CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCC-CCCTTEEEEEESGGGT
T ss_pred --ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccccc-CCCCCEEEEEechhcc
Confidence 555 78999999899887 566 8889999999999999999975321 1111111 0124578899999964
Q ss_pred -CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhH----H-HHHHHHHHHHHHHHHH
Q 010008 308 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK----V-YQNKVVSNCRALASRL 381 (520)
Q Consensus 308 -~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~----~-~~~~i~~na~~l~~~L 381 (520)
+|.|.|++++++ ++.+.+.........+++...+. +.+..++. .++. + ..+++.++++.+.+.|
T Consensus 253 ~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 253 LPGSRCGIIIAND------KTITAIANMNGIISLAPGGMGPA-MMCEMIKR---NDLLRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp CTTSCCEEEECCH------HHHHHHHHHHHHHCCCCCSHHHH-HHHHHHHT---TCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEeCH------HHHHHHHHhhcceeeCCCcHHHH-HHHHHHcC---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999977 66666543221111222223222 22333432 2222 1 4455677777888888
Q ss_pred HHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC--CCC--CCCEEEEccCCccccCCC
Q 010008 382 VEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SAL--VPGGIRIGSPAMTTRGFS 453 (520)
Q Consensus 382 ~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~~~--~~~giRig~~~~tt~g~~ 453 (520)
.+. |+.+..+. .+.++|+++...+++..++.+.|.+.||.+..+...+.. ... .++++||+... +
T Consensus 323 ~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~------~ 395 (417)
T 3g7q_A 323 RRYLSEERCLIHKPE-GAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP------E 395 (417)
T ss_dssp HHHCCTTTCEEECCC-BSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS------C
T ss_pred HHhcccCCceeeCCC-cceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC------C
Confidence 762 57776542 356678888654678888888899999999653211110 000 14689999752 5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010008 454 EKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 454 ~~d~~~la~~i~~~l~~~ 471 (520)
++++++.++.|.++++..
T Consensus 396 ~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 396 PDKIEAGVKILAEEIERA 413 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999988643
No 143
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.90 E-value=1.4e-21 Score=206.08 Aligned_cols=321 Identities=18% Similarity=0.211 Sum_probs=211.0
Q ss_pred CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-
Q 010008 101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 179 (520)
Q Consensus 101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al- 179 (520)
+.+.+++.+++++...+...+ |+.+ +..++++ +.+++++|++. .|.++||++|+.+++.++
T Consensus 37 ~~~~~~~~~~~a~~~~~~~~~--------~~~~-~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~al~~l~ 98 (437)
T 3bb8_A 37 SGKVIGTKELQLMVEASLDGW--------LTTG-RFNDAFE----KKLGEYLGVPY-----VLTTTSGSSANLLALTALT 98 (437)
T ss_dssp CCCCCCHHHHHHHHHHHHHCC--------CBSC-HHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHcCC--------cCCC-hHHHHHH----HHHHHHHCCCc-----EEEeCCHHHHHHHHHHHhh
Confidence 566678899999988775421 2322 3344554 67888999873 466789999999999998
Q ss_pred --------CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C
Q 010008 180 --------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-A 250 (520)
Q Consensus 180 --------l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~-~ 250 (520)
++|||+|++++++|.+... .+...|. +++.++++++++.+|++++++++++ ++++|+++ .
T Consensus 99 ~~~~~~~~~~~gd~Vi~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~ 167 (437)
T 3bb8_A 99 SPKLGVRALKPGDEVITVAAGFPTTVN--------PTIQNGL--IPVFVDVDIPTYNVNASLIEAAVSD-KTKAIMIAHT 167 (437)
T ss_dssp CGGGGGGSCCTTCEEEECSSSCHHHHH--------HHHHTTC--EEEECCEETTTTEECGGGHHHHCCT-TEEEEEEECG
T ss_pred hcccccccCCCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEeccCccCCcCHHHHHHhcCC-CCeEEEEeCC
Confidence 8999999999988765432 2233454 7777778755788999999999987 89999886 3
Q ss_pred CCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCCCCceEEEeeCCCcchhhHH
Q 010008 251 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELE 328 (520)
Q Consensus 251 s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~ 328 (520)
+++ ..|+++|.++|+++|+++|+|++|+.|....+.... ..+|+++.|++ |.++|++||+++++++ .+.
T Consensus 168 ~g~--~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~s~~~~k~l~~g~gg~~~~~~~-----~~~ 238 (437)
T 3bb8_A 168 LGN--LFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAG--TFGDIGTVSFYPAKHITMGEGGAVFTQSA-----ELK 238 (437)
T ss_dssp GGC--CCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSTTSSSCCSSCEEEEESCH-----HHH
T ss_pred CCC--hhcHHHHHHHHHHcCCEEEEECccccCceECCeecc--cccCEEEEECcCCcCCCCCCeEEEEeCCH-----HHH
Confidence 444 479999999999999999999999888665221111 13788877754 4468889999999863 222
Q ss_pred Hhhcc---cC---------------------------C--------CCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHH
Q 010008 329 SAINN---AV---------------------------F--------PGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 369 (520)
Q Consensus 329 ~~i~~---~~---------------------------~--------p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~ 369 (520)
+.+.. .. | .+. .+.......++++ +++. +.++.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l~~-----~~~~~~~ 312 (437)
T 3bb8_A 239 SIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLA-QLER-----IEEFVEK 312 (437)
T ss_dssp HHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHH-HHHH-----HHHHHHH
T ss_pred HHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHH-HHHH-----HHHHHHH
Confidence 22111 00 0 000 0111222222332 2332 2455666
Q ss_pred HHHHHHHHHHHHHHC-CCEEecCCC----CC-eeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCC-CCCC-C-----
Q 010008 370 VVSNCRALASRLVEL-GYKLVSGGS----DN-HLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPG-DKSA-L----- 435 (520)
Q Consensus 370 i~~na~~l~~~L~~~-G~~v~~~gt----~~-~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg-~~~~-~----- 435 (520)
..++++++.+.|.+. |+.++.... .+ +.+.+.+.. .+.+.+.+.+.|.+.||.++..+.|. ...+ +
T Consensus 313 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~ 392 (437)
T 3bb8_A 313 RKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKY 392 (437)
T ss_dssp HHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCC
T ss_pred HHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccCc
Confidence 678888999999875 776653211 02 122333332 24678889999999999997654321 1001 0
Q ss_pred ------------CCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 436 ------------VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 436 ------------~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
..+.|||++... ++++|++++++.|+++++
T Consensus 393 ~~~~~~~~~~~~~~~~lrl~~~~~----~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 393 RVVGELTNTDRIMNQTFWIGIYPG----LTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp EECSCCHHHHHHHHHEEEECCSTT----CCHHHHHHHHHHHHHHTT
T ss_pred cccCCCcHHHHHhcCEEEecCCCC----CCHHHHHHHHHHHHHHHc
Confidence 012499987644 569999999999987654
No 144
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.90 E-value=4.2e-22 Score=210.79 Aligned_cols=330 Identities=17% Similarity=0.177 Sum_probs=207.9
Q ss_pred ceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008 96 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 173 (520)
Q Consensus 96 i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~ 173 (520)
+++..+.+ .+++.+.+++... .+ .|...+...+++ +.+++++|.+. .+.+++|++|+.
T Consensus 45 lD~~~~~~~~~~~~~~~~a~~~~-~~----------~y~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~ 104 (456)
T 2ez2_A 45 IDLLTDSGTNAMSDKQWAGMMMG-DE----------AYAGSENFYHLE----RTVQELFGFKH-----IVPTHQGRGAEN 104 (456)
T ss_dssp EECSCSSSCCCCCHHHHHHHTTC-CC----------CSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHH
T ss_pred eeeccccCCccCCHHHHHHhhcc-hh----------hcccChhHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHH
Confidence 45555444 4578888888621 11 133344455555 67788888763 355678889999
Q ss_pred HHHHhhCCCCCEEEEcCCCC-CccccccccccccccccccceEEEEEcccCC----C-----CCCCCHHHHHHHhhhcCC
Q 010008 174 EVYTAILKPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----S-----TGLVDYDMLEKTAILFRP 243 (520)
Q Consensus 174 ~~l~all~pGD~Vl~~~~~~-~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~----~-----~~~iD~d~le~~i~~~~p 243 (520)
+++.++++||| +++++.| +... ..+...|. +++.+++++ + ++.+|+++|++++++ ++
T Consensus 105 ~al~~l~~~gd--i~~~~~~~~~~~--------~~~~~~G~--~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~t 171 (456)
T 2ez2_A 105 LLSQLAIKPGQ--YVAGNMYFTTTR--------YHQEKNGA--VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDE-KG 171 (456)
T ss_dssp HHHHHHCCTTC--EEEESSCCHHHH--------HHHHHTTC--EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHH-HC
T ss_pred HHHHHhCCCCC--EeccccccchhH--------HHHHHcCC--EEEEecccccccccccccccCCCCHHHHHHHHHh-cc
Confidence 99999999999 6666665 3211 12344565 666766652 2 267899999999987 44
Q ss_pred ----cEEEEcCCCC-CC--CCC---HHHHHHHHHHhCCEEEEechhhcc---------cccccccCC-----CCCcccEE
Q 010008 244 ----KLIIAGASAY-PR--DFD---YPRMRQIADAVGALLMMDMAHISG---------LVAASVVAD-----PFKYCDVV 299 (520)
Q Consensus 244 ----klIi~~~s~~-p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~g---------li~~~~~~~-----p~~~aDiv 299 (520)
++|++++++| |+ ..+ +++|+++|+++|++||+|++|..| +...+.... ....+|++
T Consensus 172 ~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~ 251 (456)
T 2ez2_A 172 AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGC 251 (456)
T ss_dssp GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEE
T ss_pred ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEE
Confidence 8888887776 64 555 999999999999999999998875 333332110 00247888
Q ss_pred EeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCC--CC--CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008 300 TTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF--PG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR 375 (520)
Q Consensus 300 ~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~--p~--~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~ 375 (520)
++|+||++..++||+++++++ ++.+.+..... .+ ..++.+...+++++.++.+... +++.++..++.+
T Consensus 252 ~~S~kk~~~~~~gG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~---~~~~~~~~~~~~ 323 (456)
T 2ez2_A 252 TMSGKKDCLVNIGGFLCMNDD-----EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVR 323 (456)
T ss_dssp EEETTTTTCCSSCEEEEESCH-----HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred EEeCcccCCCCceeEEEECCH-----HHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH---HHHHHHHHHHHH
Confidence 888999876567899998542 55554432110 01 1122233344443444332221 456677777888
Q ss_pred HHHHHHHHCCCEEecCCCCCeeEEEEecC--CCCCHHHH-----HHHH-hhcCeEEcC-CC--CCCC-----CCCCCCCE
Q 010008 376 ALASRLVELGYKLVSGGSDNHLVLVDLRP--MGIDGARV-----EKIL-DMASITLNK-NS--VPGD-----KSALVPGG 439 (520)
Q Consensus 376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~--~g~~~~~~-----~~~L-~~~gI~v~~-~~--~Pg~-----~~~~~~~g 439 (520)
.+.+.|.+.|++++.+ ...+++++++.. .+.+..++ .+.| +++||.+.. +. .|.+ ......+.
T Consensus 324 ~l~~~L~~~g~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~ 402 (456)
T 2ez2_A 324 YLGDKLKAAGVPIVEP-VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLET 402 (456)
T ss_dssp HHHHHHHHTTCCBCSS-CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred HHHHHHhcCCCccccC-CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCe
Confidence 8999998878877654 235667777631 23343333 4555 788997522 11 1110 01112468
Q ss_pred EEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
|||+.+.. ..+++|++++++.|+++++.
T Consensus 403 iRis~~~~---~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 403 VRLTIPRR---VYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp EEEECCTT---TCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCC---CCCHHHHHHHHHHHHHHHhh
Confidence 99997742 14589999999999998865
No 145
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.7e-22 Score=214.42 Aligned_cols=333 Identities=12% Similarity=0.009 Sum_probs=215.0
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCC-------ceeeecCChHHHHHHHHH
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW-------GVNVQPLSGSPANFEVYT 177 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~-------~~~V~~~sGs~A~~~~l~ 177 (520)
++..+.+.+.+.+.... . .|...+...++|+.+.+++++++|.+.+.+ ..-|.+++||+||+.++.
T Consensus 91 ~~~~~~~~~~~~~n~~~-~------~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~ 163 (481)
T 4e1o_A 91 WPSLLGDMLADAINCLG-F------TWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALL 163 (481)
T ss_dssp HHHHHHHHHHHHHCCCC-S------STTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc-C------CcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHH
Confidence 34445555655553211 1 133456678999999999999999985321 113555778899998887
Q ss_pred hhCC-------------------CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHh
Q 010008 178 AILK-------------------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA 238 (520)
Q Consensus 178 all~-------------------pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i 238 (520)
+..+ |++.|++.+..|.+.. +.+.+.|. +++.++++ +++.+|+++|++++
T Consensus 164 ~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~Le~~i 232 (481)
T 4e1o_A 164 AARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE--------KAGLISLV--KMKFLPVD-DNFSLRGEALQKAI 232 (481)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH--------HHHHhCCC--ceEEEEcC-CCCcCCHHHHHHHH
Confidence 6532 6789998887664321 22334454 66677776 57899999999999
Q ss_pred hhcC-----CcEEEEcCCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCC---CCCcccEEEeccCcccC
Q 010008 239 ILFR-----PKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLR 308 (520)
Q Consensus 239 ~~~~-----pklIi~~~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~---p~~~aDiv~~S~hK~l~ 308 (520)
++.+ |.+|+++.++++ ...|+++|+++|+++|+++++|+||..+....+.... .++.+|++++++|||+.
T Consensus 233 ~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~ 312 (481)
T 4e1o_A 233 EEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMM 312 (481)
T ss_dssp HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSS
T ss_pred HHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcC
Confidence 7632 677777654443 3789999999999999999999998776543322211 22357999999999999
Q ss_pred CCCc-eEEEeeCCCcchhhHHH-hhcc---cCCC------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010008 309 GPRG-GMIFFKKDPVLGVELES-AINN---AVFP------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV 371 (520)
Q Consensus 309 Gprg-G~I~~~~~~~~~~~l~~-~i~~---~~~p------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~ 371 (520)
+|.+ |+++++++ .+.. .+.. ..+. ..+++... ...++..+++.+...+++++.++..
T Consensus 313 ~p~g~g~l~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~al~~~g~~g~~~~~~~~~ 386 (481)
T 4e1o_A 313 VHFDCTGFWVKDK-----YKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRF-RSVKLWFVIRSFGVKNLQAHVRHGT 386 (481)
T ss_dssp CCSSCEEEEESBH-----HHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCC-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeCH-----HHHHHHhcCCchhccCcccCCCCCcccccccCCCCc-cHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9987 88888763 3222 1110 0000 11122111 2234444555554456788899999
Q ss_pred HHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008 372 SNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 450 (520)
Q Consensus 372 ~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~ 450 (520)
++++++.+.|.+. |++++.+. ..+++++++...+....++.+.|.+.|+.+- .|+. ..+...+|+++....
T Consensus 387 ~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~---~~~~--~~g~~~lR~~~~~~~-- 458 (481)
T 4e1o_A 387 EMAKYFESLVRNDPSFEIPAKR-HLGLVVFRLKGPNSLTENVLKEIAKAGRLFL---IPAT--IQDKLIIRFTVTSQF-- 458 (481)
T ss_dssp HHHHHHHHHHHTCTTEECCSCC-CSSEEEEEESSCHHHHHHHHHHHHHHCSSBC---EEEE--ETTEEEEEEECCCTT--
T ss_pred HHHHHHHHHHhcCCCeEEecCC-ceeEEEEEeCCchHHHHHHHHHHHhCCeEEE---EeeE--ECCEEEEEEEeCCCC--
Confidence 9999999999884 89987642 3456666664322123556677777674331 1111 112457999854322
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 010008 451 GFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 451 g~~~~d~~~la~~i~~~l~~ 470 (520)
.+++|++++.+.|+++.+.
T Consensus 459 -tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 459 -TTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHH
Confidence 3589999999999887753
No 146
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.89 E-value=8.2e-22 Score=206.88 Aligned_cols=294 Identities=12% Similarity=0.012 Sum_probs=191.6
Q ss_pred HHHHHHcCCCCCCCceeeecCChH-HHH--HHHHHhhCC--C----------CCEEEEcCCCCCcccccccccccccccc
Q 010008 146 KRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILK--P----------HDRIMGLDLPHGGHLSHGFMTPKRRVSG 210 (520)
Q Consensus 146 ~~~~~lfg~~~~~~~~~V~~~sGs-~A~--~~~l~all~--p----------GD~Vl~~~~~~~ghls~g~~~~~~~v~~ 210 (520)
+.++++++++++ +|.+++|+ +++ ..++.++++ | ||+|++.+|.|.++.. .+..
T Consensus 85 ~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~--------~~~~ 152 (427)
T 3ppl_A 85 QIWADLLGVPVE----QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS--------ITER 152 (427)
T ss_dssp HHHHHHHTSCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------HHHH
T ss_pred HHHHHHhCCCcc----eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH--------HHHH
Confidence 567778899876 45567777 788 378888877 7 9999999998765431 2334
Q ss_pred ccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCC--CCCHH---HHHHHH-HHhCCEEEEechhhccc
Q 010008 211 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR--DFDYP---RMRQIA-DAVGALLMMDMAHISGL 283 (520)
Q Consensus 211 ~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~-~s~~p~--~~d~~---~i~~ia-~~~g~~li~D~Ah~~gl 283 (520)
.|. +++.+++++ ++ +|+++|+++++..++|+|++. .++||+ ..+.+ +|.++| +++|+++|+|++|. ++
T Consensus 153 ~g~--~~~~v~~~~-~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~-~~ 227 (427)
T 3ppl_A 153 FGF--EMISVPMNE-DG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYA-VH 227 (427)
T ss_dssp TTC--EEEEEEEET-TE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTT-TC
T ss_pred cCC--EEEEeCCCC-CC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCc-cc
Confidence 554 667777774 33 999999999954478999876 678886 66666 788888 89999999999854 33
Q ss_pred ccccccCCC-----------CCcccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHH
Q 010008 284 VAASVVADP-----------FKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 351 (520)
Q Consensus 284 i~~~~~~~p-----------~~~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaal 351 (520)
.+.+....+ ....++++.|+||++ +|+|.||+++++ ++.+.+.........+.+...+.+ .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~------~l~~~~~~~~~~~~~~~~~~~q~~-~ 300 (427)
T 3ppl_A 228 TLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA------ENRKWYTGHAGIRGIGPNKVNQLA-H 300 (427)
T ss_dssp BSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHHHHHHCSCCCHHHHHH-H
T ss_pred ccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH------HHHHHHHHHhhcccCCCCHHHHHH-H
Confidence 333221111 113458899999974 688899999987 666665433211112333333333 2
Q ss_pred HHHHHH--hcCchhHHHHHHHHHHHHHHHHHHHH----C-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEc
Q 010008 352 AVCLKH--AQSPEFKVYQNKVVSNCRALASRLVE----L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424 (520)
Q Consensus 352 a~al~~--~~~~~~~~~~~~i~~na~~l~~~L~~----~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~ 424 (520)
+.+++. ......++..+.+.++++.+.+.|.+ . ++.+..+ ...+++|+++... +..++.+.|.++||.+.
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~ 377 (427)
T 3ppl_A 301 ARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP-AGGYFISLDVVPG--TASRVAELAKEAGIALT 377 (427)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC-SBSSCEEEECSTT--CHHHHHHHHHHTTEECC
T ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC-CccEEEEEECCcc--hHHHHHHHHHHCCCEEe
Confidence 223321 00122345556666677777777754 2 4665543 2356678887532 57788889999999995
Q ss_pred CC-CCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 425 KN-SVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 425 ~~-~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
.+ ...+......++++||+.... +++++++.++.|.++++..
T Consensus 378 ~~g~~~~~~~~~~~~~~Ris~~~~-----~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 378 GAGSSYPLRQDPENKNLRLAPSLP-----PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp CTTTTSGGGCCTTSCEEEECCSSS-----CHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCCCCCCCCCeEEEECCCC-----CHHHHHHHHHHHHHHHHHH
Confidence 41 111100012467899997532 4799999999999988754
No 147
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.89 E-value=8.3e-22 Score=205.32 Aligned_cols=322 Identities=15% Similarity=0.169 Sum_probs=197.9
Q ss_pred eEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHH
Q 010008 97 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 176 (520)
Q Consensus 97 ~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l 176 (520)
.+..+.+++.+.+.+++.. +.+. ..+|...|| +++..+++| +++++++|.+. .|.++||++|+..++
T Consensus 31 p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~a~~~~l 97 (398)
T 1gc0_A 31 PVYQTATFTFPTVEYGAAC-FAGE-QAGHFYSRI--SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITSTL 97 (398)
T ss_dssp CBCCCSCBCCC-------------------------CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHH
T ss_pred CccCCCccccCCHHHHHHh-hcCC-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHH
Confidence 4455677777777777652 2232 123332232 345555555 67888999862 466799999999999
Q ss_pred HhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-
Q 010008 177 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR- 255 (520)
Q Consensus 177 ~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~- 255 (520)
.+++++||+|+++++.|+++..... ......|. +++.++. .|++++++.+++ ++++|++..++||+
T Consensus 98 ~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG 164 (398)
T 1gc0_A 98 WTLLRPGDEVLLGNTLYGCTFAFLH----HGIGEFGV--KLRHVDM------ADLQALEAAMTP-ATRVIYFESPANPNM 164 (398)
T ss_dssp HHHCCTTCEEEEESSCCSHHHHHHH----HTGGGGTC--EEEEECT------TCHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred HHHhcCCCEEEEeCCCchhHHHHHH----HHHHHcCC--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCc
Confidence 9999999999999998876542110 00123344 5555443 389999999987 89999999888875
Q ss_pred -CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHh
Q 010008 256 -DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESA 330 (520)
Q Consensus 256 -~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~ 330 (520)
..|+++|+++|+++|+++++|++|..+... .++. ++|+++.|+||++.||. +|+++++++ .+.+.
T Consensus 165 ~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-----~~~~~ 234 (398)
T 1gc0_A 165 HMADIAGVAKIARKHGATVVVDNTYCTPYLQ-----RPLELGADLVVHSATKYLSGHGDITAGIVVGSQA-----LVDRI 234 (398)
T ss_dssp CCCCHHHHHHHHGGGTCEEEEECTTTHHHHC-----CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH-----HHHHH
T ss_pred ccccHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCceEEEECCccccCCCCCCeEEEEEEChH-----HHHHH
Confidence 789999999999999999999998766542 2233 58999999999997764 599998872 23223
Q ss_pred hcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC-CE--------------EecC--CC
Q 010008 331 INNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YK--------------LVSG--GS 393 (520)
Q Consensus 331 i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G-~~--------------v~~~--gt 393 (520)
+.........++.+....++...+++ .+....++..+|++.+.+.|.+.+ +. +..+ ..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~ 309 (398)
T 1gc0_A 235 RLQGLKDMTGAVLSPHDAALLMRGIK-----TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ 309 (398)
T ss_dssp HHTHHHHHTCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------C
T ss_pred HHHHhhccCCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCC
Confidence 43322110122333333332222332 345667788889999999997732 21 1111 01
Q ss_pred CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---------------C-------CCCCCEEEEccCCccccC
Q 010008 394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---------------S-------ALVPGGIRIGSPAMTTRG 451 (520)
Q Consensus 394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---------------~-------~~~~~giRig~~~~tt~g 451 (520)
..+++.+.+.. +.+.+.++|++.+|.+...+ .|+. + ...++.|||+.+..+
T Consensus 310 ~~~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s-~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~--- 382 (398)
T 1gc0_A 310 PGGMIAFELKG---GIGAGRRFMNALQLFSRAVS-LGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLED--- 382 (398)
T ss_dssp CTTEEEEEETT---HHHHHHHHHHHCSSSEECSC-CSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSC---
T ss_pred CceEEEEEECC---CHHHHHHHHHhCCCceeccC-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCC---
Confidence 24555666642 23567888888888764311 0110 0 012478999987544
Q ss_pred CCHHHHHHHHHHHHHH
Q 010008 452 FSEKEFVAIADFIHEG 467 (520)
Q Consensus 452 ~~~~d~~~la~~i~~~ 467 (520)
++++++.+.++|+++
T Consensus 383 -~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 383 -IDDLLADVQQALKAS 397 (398)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhc
Confidence 478888888877653
No 148
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.89 E-value=1.3e-21 Score=199.45 Aligned_cols=313 Identities=13% Similarity=0.112 Sum_probs=210.7
Q ss_pred hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008 93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS- 169 (520)
Q Consensus 93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs- 169 (520)
+..|+|..++|+ +++.|++++...+... .+||... . .++ ++++++++|++++ +|.+++|+
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~------~-~~l----r~~la~~~~~~~~----~i~~t~g~~ 77 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCI--RHYPEPD------A-GTL----RQMLAKRNSVDNN----AILVTNGPT 77 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGGG--GSCCCTT------C-HHH----HHHHHHHTTCCGG----GEEEESHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhHH--hcCCCCc------H-HHH----HHHHHHHhCcCHH----HEEEcCCHH
Confidence 467888888765 5799999998877322 3455421 1 233 3678889999875 45556776
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIA 248 (520)
Q Consensus 170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i~~~~pklIi~ 248 (520)
+|+.+++.++. ||+|++.+|.|.+.. ..+...|. +++.+++ +. ...+++ + ++|+|++
T Consensus 78 ~al~~~~~~l~--gd~Vi~~~p~~~~~~--------~~~~~~g~--~~~~v~~~~~-~~~~~~--------~-~~~~v~i 135 (350)
T 3fkd_A 78 AAFYQIAQAFR--GSRSLIAIPSFAEYE--------DACRMYEH--EVCFYPSNED-IGEADF--------S-NMDFCWL 135 (350)
T ss_dssp HHHHHHHHHTT--TCEEEEEESCCHHHH--------HHHHHTTC--EEEEEETTSC-GGGSCC--------T-TCSEEEE
T ss_pred HHHHHHHHHHC--CCEEEEeCCCcHHHH--------HHHHHcCC--eEEEEecCCc-cccCcc--------C-CCCEEEE
Confidence 89999998887 999999998775432 12334455 6666666 42 233443 3 7999999
Q ss_pred cCCCCCC--CCCHHHHHHHHHHhC-CEEEEechhhcccccccccC-CCCC--cccEEEeccCccc--CCCCceEEEeeCC
Q 010008 249 GASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVA-DPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKD 320 (520)
Q Consensus 249 ~~s~~p~--~~d~~~i~~ia~~~g-~~li~D~Ah~~gli~~~~~~-~p~~--~aDiv~~S~hK~l--~GprgG~I~~~~~ 320 (520)
+.++||+ ..+.+++.++++.++ .+||+|++|. ++...+... ..+. ..++++.|+||++ +|.|.|++++++
T Consensus 136 ~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~- 213 (350)
T 3fkd_A 136 CNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYV-SFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK- 213 (350)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTT-TSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH-
T ss_pred eCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchh-hhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCH-
Confidence 9999886 789999999999886 7999999974 333332211 1111 3458899999986 578889999976
Q ss_pred CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEE
Q 010008 321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVL 399 (520)
Q Consensus 321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~ 399 (520)
++.+++.....+ .+++....++...+|+.. ..+.+..++..++++.+.+.|.+. |+.+..+ ..++++
T Consensus 214 -----~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~ 281 (350)
T 3fkd_A 214 -----DFMKRVAAFSTP---WAVNALAIEAAKFILIHP--AQFTLPIRKWQRNTVDFITALNRLDGVEVHPS--GTTFFL 281 (350)
T ss_dssp -----HHHHHHHTTCCT---TCSCHHHHHHHHHHHHCT--TTTCCCHHHHHHHHHHHHHHHHHSTTEEECCC--SSSEEE
T ss_pred -----HHHHHHHHhCCC---CCCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHhcCCCcEECCC--CCcEEE
Confidence 777777654332 233444444444455532 123233344448889999999885 8887543 345566
Q ss_pred EEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 400 VDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 400 vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+.+... +..++.+.|.+ .||.+..+... +...++++||++. +++|++++.+.|+++++.
T Consensus 282 ~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f---~~~~~~~iRis~~-------~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 282 LRLKKG--TAAELKKYMLEEYNMLIRDASNF---RGLDESYVRITTQ-------RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp EEESSS--CHHHHHHHHHHTTCEECEECTTS---TTCCTTEEEEECC-------CHHHHHHHHHHHHHHHTC
T ss_pred EECCCC--CHHHHHHHHHHHCCEEEEeCccC---CCCCCCEEEEEcC-------CHHHHHHHHHHHHHHHHH
Confidence 777532 67778888877 99999543221 2234679999854 478999999999887753
No 149
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.89 E-value=4e-22 Score=212.79 Aligned_cols=313 Identities=11% Similarity=-0.021 Sum_probs=205.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHcCCCCCC------CceeeecCChHHHHHHHHHhhC-------------------CCCCE
Q 010008 131 YGGNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAIL-------------------KPHDR 185 (520)
Q Consensus 131 y~g~~~~d~lE~~a~~~~~~lfg~~~~~------~~~~V~~~sGs~A~~~~l~all-------------------~pGD~ 185 (520)
|...+...++|+.+.+++++++|.+.+. ....|.+++||+||+.++.+.. .|++.
T Consensus 105 ~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 184 (475)
T 3k40_A 105 WIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184 (475)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEE
T ss_pred ccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeE
Confidence 3445678899999999999999998531 0113555778899998877652 14578
Q ss_pred EEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcC-----CcEEEEcCCCCC--CCCC
Q 010008 186 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAYP--RDFD 258 (520)
Q Consensus 186 Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~-----pklIi~~~s~~p--~~~d 258 (520)
|++.+..|.+.. +.+...|. +++.+++| +++ +|+++|++++++.+ |++|++..+++. ...|
T Consensus 185 vi~s~~~H~s~~--------~~~~~~g~--~~~~v~~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~ 252 (475)
T 3k40_A 185 GYCSDQAHSSVE--------RAGLLGGV--KLRSVQSE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY 252 (475)
T ss_dssp EEEETTSCHHHH--------HHHHHHTC--EEEEECCB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred EEECCCchHHHH--------HHHHHcCC--ceEEEECC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC
Confidence 998887664332 23344565 66777777 467 99999999997631 666776654433 3789
Q ss_pred HHHHHHHHHHhCCEEEEechhhcccccccccCC---CCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHH-Hhhc-
Q 010008 259 YPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE-SAIN- 332 (520)
Q Consensus 259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~---p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~-~~i~- 332 (520)
+++|+++|+++|+++++|+||..+....+.... .++.+|++++++|||+.+|.| |+++++++ +.. +.+.
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~-----~~l~~~~~~ 327 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDP-----SWVVNAFNV 327 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSG-----GGC------
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCH-----HHHHHHhcC
Confidence 999999999999999999998776543322211 223579999999999999887 88888774 221 1110
Q ss_pred ------ccC--------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCee
Q 010008 333 ------NAV--------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL 397 (520)
Q Consensus 333 ------~~~--------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~ 397 (520)
... ....+++... ...++..+++.+...++++..++..++++++.+.|.+. |++++.+. ...+
T Consensus 328 ~~~yl~~~~~~~~~~~~~~~~~~sr~~-~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-~~~i 405 (475)
T 3k40_A 328 DPLYLKHDMQGSAPDYRHWQIPLGRRF-RALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-NMGL 405 (475)
T ss_dssp ---------------------CCCGGG-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-BTTE
T ss_pred CccccCCCcCCCCCCcccccccCCCcc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEE
Confidence 000 0011122111 23345556665555677888999999999999999984 99988653 3455
Q ss_pred EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+.+++...+....++.+.|.+.|+.+- .|+. ..+...+|+++... ..+++|++++.+.|.++.+.
T Consensus 406 v~f~~~~~~~~~~~l~~~L~~~g~~~~---~~~~--~~g~~~lR~~~~~~---~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 406 VCFRLKGSNERNEALLKRINGRGHIHL---VPAK--IKDVYFLRMAICSR---FTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTSCBC---EEEE--ETTEEEEEEECCCT---TCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHhCCcEEE---EeeE--ECCEEEEEEEeCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 666664322223556677776665431 1111 12346799985422 23589999999999988764
No 150
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.82 E-value=6.3e-25 Score=227.96 Aligned_cols=336 Identities=14% Similarity=0.117 Sum_probs=218.4
Q ss_pred ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCChH
Q 010008 94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS 169 (520)
Q Consensus 94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sGs 169 (520)
+.|+|..+++ .+++.+++++...+.+. ..+|+. + ..++++...+++.+.+| ++++ +|.+++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~----~v~~~~g~ 98 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-VYGYTY-----A---SDELLQAVLDWEKSEHQYSFDKE----DIVFVEGV 98 (392)
Confidence 4567766554 36788999988777432 223332 1 34555556677777778 4444 45556765
Q ss_pred -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHHHHHhhhcCCcEE
Q 010008 170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~le~~i~~~~pklI 246 (520)
+|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|++++++.++..++++|
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v 168 (392)
T 3b1d_A 99 VPAISIAIQAFTKEGEAVLINSPVYPPFAR--------SVRLNNR--KLVSNSLKEENGLFQIDFEQLENDIVENDVKLY 168 (392)
Confidence 89999999999999999999988765431 2233444 5556666422 356899999999874478999
Q ss_pred EEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-------CcccEEEeccCccc--CCCCc
Q 010008 247 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSL--RGPRG 312 (520)
Q Consensus 247 i~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-------~~aDiv~~S~hK~l--~Gprg 312 (520)
+++.++||+ .. ++++|+++|+++|++||+|++|. ++...+....++ ...++++.|+||++ +|+|.
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 247 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQ-DLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKN 247 (392)
Confidence 988888876 33 58999999999999999999965 333332111111 12348889999997 67889
Q ss_pred eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-C-CCEEec
Q 010008 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLVS 390 (520)
Q Consensus 313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~-G~~v~~ 390 (520)
|+++++++ ++.+.+.....+...++++....++...+|+.. ...+++..+++.++++.+.+.|.+ . |+.+..
T Consensus 248 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 321 (392)
T 3b1d_A 248 SYAIIENP-----TLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMK 321 (392)
Confidence 99998763 466666554333222233333333333455532 233466777888888889988876 3 776654
Q ss_pred CCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 391 ~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+ ..+.+.|+++...+.+..++.+.| +++||.+..+..+ ++..++++||++.. +++++++.++.|.++++
T Consensus 322 ~-~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f---~~~~~~~iRi~~~~------~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 322 P-QGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDY---GSEGELHARLNIAA------PKSLVEEICKRIVCCLP 391 (392)
Confidence 3 234445677754334556666767 5899999543211 12235689998542 36888888888877653
No 151
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.89 E-value=3.2e-21 Score=206.82 Aligned_cols=335 Identities=11% Similarity=0.027 Sum_probs=212.4
Q ss_pred CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---
Q 010008 103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--- 179 (520)
Q Consensus 103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--- 179 (520)
..+++.|++++.....|... ..|+..+...++|+.+++++++++|++.... -+..++|++||..++.++
T Consensus 110 ~~~~~~v~~~~~~~~~n~~~------~~~~~~~~~~~le~~~~~~la~~~g~~~~~~--~~~t~ggt~a~~~al~~ar~~ 181 (497)
T 2qma_A 110 PPLMPAVAAEAMIAALNQSM------DSWDQASSATYVEQKVVNWLCDKYDLSEKAD--GIFTSGGTQSNQMGLMLARDW 181 (497)
T ss_dssp CCBHHHHHHHHHHHHHCCCT------TCGGGCHHHHHHHHHHHHHHHHHTTCCTTCE--EEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhcccc------cchhhChHHHHHHHHHHHHHHHHhCCCCCCC--eEEcCCchHHHHHHHHHHHHH
Confidence 45688898888666554311 1133345678899999999999999975222 244466679999888773
Q ss_pred -C---------CC------CC-EEEEcCCCCCccccccccccccccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhc
Q 010008 180 -L---------KP------HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF 241 (520)
Q Consensus 180 -l---------~p------GD-~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~ 241 (520)
+ ++ || .|++.++.|.+.. +.....|.+. +++.++++ +++.+|+++|++++++.
T Consensus 182 ~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~--------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~ 252 (497)
T 2qma_A 182 IADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ--------KSASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQA 252 (497)
T ss_dssp HHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH--------HHHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHH
T ss_pred HHHhhcccchhhcccccccCCeEEEECCCchHHHH--------HHHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHH
Confidence 3 13 46 7887776654332 1223333322 34556666 46899999999998763
Q ss_pred ---C--CcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCCcccEEEeccCcccCCCCc
Q 010008 242 ---R--PKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRG 312 (520)
Q Consensus 242 ---~--pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~~aDiv~~S~hK~l~Gprg 312 (520)
. |.+|++..++|++ ..|+++|+++|+++|+++++|+||..+....+.. ...++.+|++++|+|||+.+|.+
T Consensus 253 ~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~ 332 (497)
T 2qma_A 253 KAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTIS 332 (497)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS
T ss_pred HHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcc
Confidence 1 3377776666554 7899999999999999999999987665433311 01123689999999999988765
Q ss_pred -eEEEeeCCCcchhhHHHhhcccC-C--CCCCCCChHHH----------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008 313 -GMIFFKKDPVLGVELESAINNAV-F--PGLQGGPHNHT----------IGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 378 (520)
Q Consensus 313 -G~I~~~~~~~~~~~l~~~i~~~~-~--p~~~g~p~~~~----------iaala~al~~~~~~~~~~~~~~i~~na~~l~ 378 (520)
|+++++++ ...+.+.... + ...+..++... ..++..+++.+...++.+..++..++++++.
T Consensus 333 ~G~l~~~~~-----~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~ 407 (497)
T 2qma_A 333 CGALLVNDK-----SNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVA 407 (497)
T ss_dssp CEEEEESCG-----GGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCH-----HHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99998874 3223222110 0 00000111111 1123445665544566788899999999999
Q ss_pred HHHHH-CCCEEecCCCCCeeEEEEecCCCCCH----HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCC
Q 010008 379 SRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDG----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGF 452 (520)
Q Consensus 379 ~~L~~-~G~~v~~~gt~~~~~~vd~~~~g~~~----~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~ 452 (520)
+.|.+ .|++++.+. ...++++.+.+.+.+. ..+.+.|.+.|+.+.. +.. ....+.+|+++ +..+
T Consensus 408 ~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~----~~~-~~g~~~lRis~~~~~~---- 477 (497)
T 2qma_A 408 DMIRTNDQFELLAEP-SLSTVLFRATHETADLDELNKALRLEALTRGIAVLG----ETI-VDGKTALKFTILNPCL---- 477 (497)
T ss_dssp HHHHTCTTEEECSCC-SSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCE----EEE-ETTEEEEEEECCCTTC----
T ss_pred HHHhhCCCeEEEcCC-CceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEE----eeE-ECCEEEEEEEecCCCC----
Confidence 99988 488886543 2345666665432222 3455677788988732 111 11245799986 4444
Q ss_pred CHHHHHHHHHHHHHHHH
Q 010008 453 SEKEFVAIADFIHEGVE 469 (520)
Q Consensus 453 ~~~d~~~la~~i~~~l~ 469 (520)
+++|++++.+.|.++++
T Consensus 478 t~edi~~~~~~l~~~~~ 494 (497)
T 2qma_A 478 TTSDFESLLSKINMLAV 494 (497)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 48999999999988764
No 152
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.89 E-value=3.2e-22 Score=210.72 Aligned_cols=286 Identities=18% Similarity=0.160 Sum_probs=190.9
Q ss_pred ccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC
Q 010008 76 EADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 154 (520)
Q Consensus 76 ~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~ 154 (520)
+...++.+.+.++.+++...++.++.+| .+.|++++....... ...+..+ |..+....+++| +++++++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~~vl~A~~~~~~~~~~~~~~~g--~~y~~~~~~~l~----~~la~~~g~ 80 (431)
T 3ht4_A 9 EKIAPIVKEVESQITEVHKRADEVIESN--QFRVLESFGKHKISDSHFIPTTG--YGYDDIGRDTLE----KVYADVFGA 80 (431)
T ss_dssp TTSHHHHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHTTCCGGGSCCCCT--TCCSCHHHHHHH----HHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhchhhhhcCCCCC--CCCChhhHHHHH----HHHHHHhCC
Confidence 4455566666677777778888888777 478888887643211 1111122 111223344444 789999999
Q ss_pred CCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcC-CCCCccccccccc--cccccccccceEEEEEcccCCCCCCCCH
Q 010008 155 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVDY 231 (520)
Q Consensus 155 ~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~-~~~~ghls~g~~~--~~~~v~~~g~~~~~v~~~~d~~~~~iD~ 231 (520)
+.+. ++++++||++||.+++.++++|||+|++++ +.|+++......+ ....+...|. +++.+++++ ++.+|+
T Consensus 81 ~~~~--~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~--~~~~v~~~~-~~~~d~ 155 (431)
T 3ht4_A 81 EAGL--VRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI--GYNAVPLTE-GGLVDF 155 (431)
T ss_dssp SEEC--CBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC--EEEECCBCT-TSSBCH
T ss_pred Cccc--ccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC--EEEEeCCCC-CCCcCH
Confidence 8642 245568999999999999999999999998 7776543211000 0011222354 677777763 588999
Q ss_pred HHHHHHhhhcCCcEEEEc-CCCCCC-----CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC-cccEEEec
Q 010008 232 DMLEKTAILFRPKLIIAG-ASAYPR-----DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT 302 (520)
Q Consensus 232 d~le~~i~~~~pklIi~~-~s~~p~-----~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S 302 (520)
++|++++++ +||+|++. .++||+ ..|+++|+++|++ +|+++++|++|..+... ..|+. ++|++++|
T Consensus 156 e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~----~~~~~~g~Di~~~S 230 (431)
T 3ht4_A 156 EAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEE----QEPCHVGADLMAGS 230 (431)
T ss_dssp HHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSS----CCGGGTTCSEEEEE
T ss_pred HHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccC----CCccccCCeEEEcC
Confidence 999999987 89999998 466665 4478999999999 99999999997655321 12333 68999999
Q ss_pred cCcccCC---CCceEEEeeCCCcchhhHHHhhcccC-CCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008 303 THKSLRG---PRGGMIFFKKDPVLGVELESAINNAV-FPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 376 (520)
Q Consensus 303 ~hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~~-~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~ 376 (520)
+||++.| +.||++++++ ++.+++.... .++. ..++.......+..+++. ...+.++..++++.
T Consensus 231 ~sK~lgg~~~~~GG~v~~~~------~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~a~~ 299 (431)
T 3ht4_A 231 LIKNPGGGIVKTGGYIVGKE------QYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFL-----APHVAGQALKGAIF 299 (431)
T ss_dssp TTSGGGTTTCSSCEEEEECH------HHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCceEEEEecH------HHHHHHHHHhccCCcccccCccHHHHHHHHhHhhh-----HHHHHHHHHHHHHH
Confidence 9999866 7889999987 6766664321 1221 112211111111123332 24567888999999
Q ss_pred HHHHHHHCCCEEec
Q 010008 377 LASRLVELGYKLVS 390 (520)
Q Consensus 377 l~~~L~~~G~~v~~ 390 (520)
+++.|++.|+++..
T Consensus 300 l~~~L~~~g~~v~p 313 (431)
T 3ht4_A 300 TAAFLEKLGMNTSP 313 (431)
T ss_dssp HHHHHHHHTCCEES
T ss_pred HHHHHHhCcCEecC
Confidence 99999999988744
No 153
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.89 E-value=9.5e-23 Score=215.90 Aligned_cols=280 Identities=14% Similarity=0.152 Sum_probs=184.7
Q ss_pred HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008 144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 222 (520)
Q Consensus 144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~ 222 (520)
+++++++ +|++. .+..++|+ +||.+++.++++|||+|++.++.|.+... .+...|. +++.++.
T Consensus 62 ~~~~la~-~g~~~-----~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~--------~~~~~G~--~~~~v~~ 125 (446)
T 2x3l_A 62 SMKQVEK-HSDYD-----GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH--------ALDISQQ--EGHFIET 125 (446)
T ss_dssp HHHHHCS-CTTEE-----EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH--------HHHHHTC--CEEECEE
T ss_pred HHHHHHh-cCCCc-----eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH--------HHHHcCC--eEEEEeC
Confidence 3478888 99872 34557776 99999999999999999999987765431 2334455 4555555
Q ss_pred --CCCC---CCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-C-
Q 010008 223 --DEST---GLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K- 294 (520)
Q Consensus 223 --d~~~---~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-~- 294 (520)
+++. +.+|++++ +.+ ++|+|+++.+++.+ ..|+++|.++|+++|+++++|++|...+.+.+. +... .
T Consensus 126 ~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~ 200 (446)
T 2x3l_A 126 HQSPLTNHYNKVNLSRL---NND-GHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY 200 (446)
T ss_dssp EECTTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG
T ss_pred eeccccCcCCCCCHHHH---cCC-CceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc
Confidence 4221 46788887 444 78999888776644 789999999999999999999998763323222 2111 2
Q ss_pred cccEEEeccCcccCCCC-ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008 295 YCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373 (520)
Q Consensus 295 ~aDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n 373 (520)
++|++++|+||++.|+. +|+++++++.. + ...+.........++++...++++..+++.+...+.+++.++..++
T Consensus 201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i---~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l 276 (446)
T 2x3l_A 201 QADYVVQSFHKTLPALTMGSVLYIHKNAP---Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQL 276 (446)
T ss_dssp TCSEEEECHHHHSSSCTTCEEEEEETTCT---T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCEEEECCccccccccccEEEEEcCCcC---C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 58999999999987764 49999988421 1 1122211111124567777788877777655433333355555555
Q ss_pred HHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS 453 (520)
Q Consensus 374 a~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~ 453 (520)
++.+.+. |++++... +...+++++. ++++.++.+.|.+.||.+.. +| .+.+|++++..+ +
T Consensus 277 ~~~l~~~----g~~~~~~~-~~~~l~i~~~--~~~~~~l~~~L~~~GI~v~~---~g------~~~iRi~~~~~~----t 336 (446)
T 2x3l_A 277 IECLENK----GFEMLQVD-DPLKLLIKYE--GFTGHDIQNWFMNAHIYLEL---AD------DYQALAILPLWH----H 336 (446)
T ss_dssp HHHHHHH----TCEEEECS-STTEEEEECT--TSCHHHHHHHHHHTTEEESE---EC------SSCEEEECCCCC----T
T ss_pred HHHHHHc----CCEECcCC-CCeEEEEEeC--CcCHHHHHHHHHHCCCEEEe---cC------CCEEEEEeecCC----C
Confidence 5555444 88887643 3334666664 66788888889888999952 22 357999876443 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 010008 454 EKEFVAIADFIHEGVE 469 (520)
Q Consensus 454 ~~d~~~la~~i~~~l~ 469 (520)
++|+ ++.+.|.++++
T Consensus 337 ~e~i-~l~~aL~~~~~ 351 (446)
T 2x3l_A 337 DDTY-LFDSLLRKIED 351 (446)
T ss_dssp TCCC-CHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHH
Confidence 6888 88888888764
No 154
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.89 E-value=5e-22 Score=219.42 Aligned_cols=296 Identities=17% Similarity=0.136 Sum_probs=205.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008 135 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 213 (520)
Q Consensus 135 ~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~ 213 (520)
..+.++| ++++++||++.. +.+++|+ .||.++++++++|||+|++..+.|.++.. .+...|.
T Consensus 195 g~i~eaE----~~lA~~fGa~~a-----~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~--------~l~lsGa 257 (715)
T 3n75_A 195 GPHKEAE----QYIARVFNADRS-----YMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH--------LMMMSDV 257 (715)
T ss_dssp THHHHHH----HHHHHHHTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHSCC
T ss_pred HHHHHHH----HHHHHHhCCCCc-----eEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH--------HHHHcCC
Confidence 3455555 788999999862 4458886 99999999999999999999998765531 2445665
Q ss_pred eEEEEEcccCCCCCC----C-----CHHHHHHHhhhc-C---CcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechh
Q 010008 214 YFESMPYRLDESTGL----V-----DYDMLEKTAILF-R---PKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAH 279 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~----i-----D~d~le~~i~~~-~---pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah 279 (520)
+++.++.+.+++. + |+++|++++++. + |++++++.+++.+ ..|+++|.++|++++ +++|+||
T Consensus 258 --~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH 333 (715)
T 3n75_A 258 --TPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAW 333 (715)
T ss_dssp --EEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTT
T ss_pred --EEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEcccc
Confidence 6666554422332 3 899999999863 2 3478887776544 789999999998653 7999999
Q ss_pred hcccccccccC--CCCC-c--ccEE---EeccCcccCCC-CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHH
Q 010008 280 ISGLVAASVVA--DPFK-Y--CDVV---TTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGG 350 (520)
Q Consensus 280 ~~gli~~~~~~--~p~~-~--aDiv---~~S~hK~l~Gp-rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaa 350 (520)
..++.+.+..+ +++. + +|++ ++|+||+|+|+ .+|+|.++++. ...+++........++|+...+|+
T Consensus 334 ~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i-----~~~~~~~~~~~~~STSpsy~~~As 408 (715)
T 3n75_A 334 VPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV-----NEETFNEAYMMHTTTSPHYGIVAS 408 (715)
T ss_dssp CTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCC-----CHHHHHHHHHHTSCSSCCHHHHHH
T ss_pred ccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchh-----hHHHHHHHHHhhcCCCchHHHHHH
Confidence 98865443322 3333 2 6865 89999999998 56999998741 223344433333467889999999
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-----C--CEEecCC----------------------------CCC
Q 010008 351 LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-----G--YKLVSGG----------------------------SDN 395 (520)
Q Consensus 351 la~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-----G--~~v~~~g----------------------------t~~ 395 (520)
+.+|++.+...+..++.++..++++.+++.|.+. | ++++.+. .|.
T Consensus 409 ldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp 488 (715)
T 3n75_A 409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP 488 (715)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCC
Confidence 9999887753344678899999999999998763 2 4554321 011
Q ss_pred eeEEEEecCC---------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 396 HLVLVDLRPM---------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 396 ~~~~vd~~~~---------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
--++++++.. |+++..+.+.|+++||.+.+.. ...| -.+.|.|-+++++.++.+++.+
T Consensus 489 ~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---------~~~v----l~l~s~g~~~~~~~~L~~aL~~ 555 (715)
T 3n75_A 489 IKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------PYNL----LFLFSIGIDKTKALSLLRALTD 555 (715)
T ss_dssp TEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE---------TTEE----EEECCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC---------CCcE----EEEeCCCCCHHHHHHHHHHHHH
Confidence 1123444332 6788899999999999986531 1222 2355667789999999999887
Q ss_pred HHH
Q 010008 467 GVE 469 (520)
Q Consensus 467 ~l~ 469 (520)
.-+
T Consensus 556 ~~~ 558 (715)
T 3n75_A 556 FKR 558 (715)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 155
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.89 E-value=6.1e-22 Score=201.00 Aligned_cols=302 Identities=16% Similarity=0.135 Sum_probs=205.4
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC---CCCCCCceeeecCCh
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLSG 168 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg---~~~~~~~~~V~~~sG 168 (520)
..|+|..+++. +++.|++++...+......+|+.. + ..+++ +.++++++ ++++ +|.+++|
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~---~~~lr----~~la~~~~~~~~~~~----~v~~~~G 84 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS----P---DEELI----EKILSYLDTDFLSKN----NVSVGNG 84 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS----S---CHHHH----HHHHHHHTCSSCCGG----GEEEESS
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----c---hHHHH----HHHHHHcCCCCCCHH----HEEEcCC
Confidence 45888888773 689999999887732212344421 1 23444 66778888 7665 4555666
Q ss_pred H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008 169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi 247 (520)
+ +|+..++.++ ||+|++. |.|.++.. .+...|. +++.++++ +++.+|++++ + ++|+|+
T Consensus 85 ~~~al~~~~~~~---gd~Vl~~-p~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l-----~-~~~~v~ 143 (335)
T 1uu1_A 85 ADEIIYVMMLMF---DRSVFFP-PTYSCYRI--------FAKAVGA--KFLEVPLT-KDLRIPEVNV-----G-EGDVVF 143 (335)
T ss_dssp HHHHHHHHHHHS---SEEEECS-SSCHHHHH--------HHHHHTC--EEEECCCC-TTSCCCCCCC-----C-TTEEEE
T ss_pred hHHHHHHHHHHh---CCcEEEC-CCcHHHHH--------HHHHcCC--eEEEeccC-CCCCCCHHHc-----C-CCCEEE
Confidence 5 8999888887 9999999 87755321 2233454 66677776 3467888776 3 789999
Q ss_pred EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc--CCCCceEEEeeCCC
Q 010008 248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP 321 (520)
Q Consensus 248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l--~GprgG~I~~~~~~ 321 (520)
++.|+||+ ..+.+++.++++.+| ++|+|++|.. +....... .+. ..+++++|+||++ +|.|.|++++++
T Consensus 144 l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~-~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-- 218 (335)
T 1uu1_A 144 IPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYE-FHGESYVD-FLKKYENLAVIRTFSKAFSLAAQRVGYVVASE-- 218 (335)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHH-HHCCCCGG-GGGTCSSEEEEEESTTTTTCGGGCCEEEEECH--
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchh-hcchhHHH-HhhhCCCEEEEecchhhcCCcccCeEEEEeCH--
Confidence 88888886 789999999999989 9999999763 22111011 011 3568999999997 577889999976
Q ss_pred cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008 322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD 401 (520)
Q Consensus 322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd 401 (520)
++.+++.....++ +++....+++..+|+. ...+++..+++.++++.+.+.|.+.|+.+..+ ...+++++
T Consensus 219 ----~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~ 287 (335)
T 1uu1_A 219 ----KFIDAYNRVRLPF---NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS--RGNFVFVF 287 (335)
T ss_dssp ----HHHHHHHHHSCTT---CSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--CSSEEEEE
T ss_pred ----HHHHHHHHhcCCC---CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcCC--CCeEEEEE
Confidence 6766665543322 3444445555555654 12457778888999999999998778775433 23456777
Q ss_pred ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
+.. .+..++.+.|.++||.+.. .++++||++. +++|++++.+.|++
T Consensus 288 ~~~--~~~~~~~~~l~~~gi~v~~----------~~~~iRis~~-------~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 288 MEK--EEKERLLEHLRTKNVAVRS----------FREGVRITIG-------KREENDMILRELEV 333 (335)
T ss_dssp CCT--HHHHHHHHHHHHHTEEEEE----------ETTEEEEECC-------CHHHHHHHHHHHHC
T ss_pred CCC--CCHHHHHHHHHHCCEEEEE----------CCCeEEEEeC-------CHHHHHHHHHHHHh
Confidence 642 3456677788889999953 2468999863 25778888887764
No 156
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.89 E-value=2.4e-22 Score=210.65 Aligned_cols=350 Identities=16% Similarity=0.177 Sum_probs=213.1
Q ss_pred hhccccChH-HHHHHHHHHHHh-hccceEecC---CC----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHH
Q 010008 72 YSLGEADPE-VCEIITKEKERQ-FKSLELIAS---EN----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET 142 (520)
Q Consensus 72 ~~l~~~d~~-~~~~~~~e~~~~-~~~i~Lias---en----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~ 142 (520)
+++...++. ++.+........ .+.|+|..+ ++ ++++.|.+++...+.+....+|+.. .| ..++.+
T Consensus 26 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr~ 99 (420)
T 4f4e_A 26 SAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPI---DG---IAAYDA 99 (420)
T ss_dssp TTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCT---TC---CHHHHH
T ss_pred hcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCC---CC---cHHHHH
Confidence 445556665 455444433322 367888877 32 2348999999988775333445431 12 234443
Q ss_pred HHHHHHHHHcCC--CCCCCceeeecCChH-HHHHHH--HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEE
Q 010008 143 LCQKRALAAFNL--DENKWGVNVQPLSGS-PANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 217 (520)
Q Consensus 143 ~a~~~~~~lfg~--~~~~~~~~V~~~sGs-~A~~~~--l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~ 217 (520)
...+++....+. +++. ++|.+++|+ +|+..+ +.++++|||+|++++|.|.++.. .+...|. ++
T Consensus 100 ~ia~~l~~~~~~~~~~~~--~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~--~~ 167 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGR--VVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA--------LFDMAGF--EV 167 (420)
T ss_dssp HHHHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHTTC--CE
T ss_pred HHHHHhcCCCccccccCc--eEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH--------HHHHcCC--eE
Confidence 333444332221 2321 134556666 899888 55778999999999998765421 2334555 55
Q ss_pred EEccc-CCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc-
Q 010008 218 MPYRL-DESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV- 288 (520)
Q Consensus 218 v~~~~-d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~- 288 (520)
+.+++ +++++.+|++++++.++.. ++++++++.++||+ .. ++++|+++|+++|+++|+|++| .++...+.
T Consensus 168 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y-~~~~~~~~~ 246 (420)
T 4f4e_A 168 VAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAY-QGFGESIEA 246 (420)
T ss_dssp EEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTSSSCTTG
T ss_pred EEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccc-ccccCCcch
Confidence 55555 3356889999999999732 57888899999987 43 4678889999999999999995 55554321
Q ss_pred cCCCC------CcccEEEeccCccc--CCCCceEEEeeCCCcchhhHHH----hhcccCCCCCCCCChHHHHHHHHHHHH
Q 010008 289 VADPF------KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELES----AINNAVFPGLQGGPHNHTIGGLAVCLK 356 (520)
Q Consensus 289 ~~~p~------~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~----~i~~~~~p~~~g~p~~~~iaala~al~ 356 (520)
...++ ...++++.|+||++ +|+|.|+++..... .++.+ .+.........+.+...+. +.+.++.
T Consensus 247 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 322 (420)
T 4f4e_A 247 DAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDS---KDEAARVLSQLKRVIRTNYSNPPTHGGA-IVAAVLA 322 (420)
T ss_dssp GGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSS---HHHHHHHHHHHHHHHHTTTSSCCSHHHH-HHHHHHH
T ss_pred hhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCC---HHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHhc
Confidence 00011 12458889999987 48889998753210 03322 2222111222233333222 2222332
Q ss_pred Hh-----cCchhHHHHHHHHHHHHHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC
Q 010008 357 HA-----QSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS 427 (520)
Q Consensus 357 ~~-----~~~~~~~~~~~i~~na~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~ 427 (520)
.. .....++..+++.++++.+.+.|.+. |+.+..+. .+.+.|+++ +.+.+.+.|+++||.+.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~~~~-----~~~~~~~~l~~~gI~v~--- 393 (420)
T 4f4e_A 323 SPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQ-RGMFSYSGL-----TSAQVDRLREEFGIYAV--- 393 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHS-CSSEEECCC-----CHHHHHHHHHHHCEECC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCC-ccEEEEeCC-----CHHHHHHHHHhCCEEec---
Confidence 21 01234667788889999999999885 66554432 234444333 56778889999999983
Q ss_pred CCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 428 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 428 ~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
|+ .||+...+ ++++++++++.|.+++
T Consensus 394 -~~---------~Ris~~~~-----~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 394 -ST---------GRICVAAL-----NTRNLDVVANAIAAVL 419 (420)
T ss_dssp -TT---------SEEEGGGC-----CTTTHHHHHHHHHHHH
T ss_pred -CC---------CeEEEecC-----CHHHHHHHHHHHHHHh
Confidence 31 28886533 4688999999998775
No 157
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.88 E-value=7.8e-21 Score=204.14 Aligned_cols=307 Identities=13% Similarity=0.087 Sum_probs=196.1
Q ss_pred hhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChHHHHHHHHHhhCC--------CC-----C-EEEEcCCCCCcccc
Q 010008 135 EYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILK--------PH-----D-RIMGLDLPHGGHLS 198 (520)
Q Consensus 135 ~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs~A~~~~l~all~--------pG-----D-~Vl~~~~~~~ghls 198 (520)
+...++|..+++++++++|++ .+. -+...+||+||..++.++.+ +| | .|+++++.|.+..
T Consensus 128 ~~~~~le~~~~~~la~~~g~~~~~~~---~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~- 203 (504)
T 2okj_A 128 PVFVLMEQITLKKMREIVGWSSKDGD---GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK- 203 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSSCE---EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH-
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCC---EEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH-
Confidence 556788988889999999998 331 23345566999988887742 67 7 7887776654331
Q ss_pred ccccccccccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCC--CCCHHHHHHHHHHhC
Q 010008 199 HGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DFDYPRMRQIADAVG 270 (520)
Q Consensus 199 ~g~~~~~~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~p~--~~d~~~i~~ia~~~g 270 (520)
+.+...|.+. +++.++++ +++.+|+++|++++++. +|++|+++.++|++ ..|+++|+++|+++|
T Consensus 204 -------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g 275 (504)
T 2okj_A 204 -------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 275 (504)
T ss_dssp -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred -------HHHHHcCCCcccEEEEecC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Confidence 1223334322 44556666 46899999999999763 58899988776654 789999999999999
Q ss_pred CEEEEechhhcccccccccCCC---CCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCC-------
Q 010008 271 ALLMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGL------- 339 (520)
Q Consensus 271 ~~li~D~Ah~~gli~~~~~~~p---~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~------- 339 (520)
+++++|++|..+......+... +.++|++++++|||+.+|.+ |+++++++ ++.+.......+.+
T Consensus 276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 350 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK-----GILQGCNQMCAGYLFQPDKQY 350 (504)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST-----THHHHHHCCCCSSSCCSCCSS
T ss_pred CEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH-----HHHHHHhcCCCccccCCcccc
Confidence 9999999987665532221112 23689999999999987765 99999874 34332111111111
Q ss_pred -----------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecC--CCCCeeEEEEecCC
Q 010008 340 -----------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG--GSDNHLVLVDLRPM 405 (520)
Q Consensus 340 -----------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~--gt~~~~~~vd~~~~ 405 (520)
+++.....+ +++.+++.+...+++++.++..++++++.+.|.+ .|++++.+ ...+. +.+...+.
T Consensus 351 ~~~~~~~~~~~~~~rr~~~l-~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~-v~f~~~~~ 428 (504)
T 2okj_A 351 DVSYDTGDKAIQCGRHVDIF-KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN-VCFWYIPQ 428 (504)
T ss_dssp CGGGCCGGGSSCSSCBCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSC-EEEEECCG
T ss_pred cCcCCcccCCCCCCCCccHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEE-EEEEEeCc
Confidence 111000111 2222233333356788889999999999999988 48998762 22233 33322221
Q ss_pred ---CCC------------HHHHHHHHhhcCe-EEcCCCCCCCCCCCCCCEEEEccC-CccccCCCHHHHHHHHHHHHHHH
Q 010008 406 ---GID------------GARVEKILDMASI-TLNKNSVPGDKSALVPGGIRIGSP-AMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 406 ---g~~------------~~~~~~~L~~~gI-~v~~~~~Pg~~~~~~~~giRig~~-~~tt~g~~~~d~~~la~~i~~~l 468 (520)
+.+ ...+.+.|.+.|+ .+......+ .++.+|+++. ..| +++|++++.+.|.++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~----t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGD-----KANFFRMVISNPAA----TQSDIDFLIEEIERLG 499 (504)
T ss_dssp GGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEECCCCTTC----CHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECC-----ceEEEEEEeCCCCC----CHHHHHHHHHHHHHHH
Confidence 100 2356677777785 443111110 1257999874 444 4899999999998765
Q ss_pred H
Q 010008 469 E 469 (520)
Q Consensus 469 ~ 469 (520)
+
T Consensus 500 ~ 500 (504)
T 2okj_A 500 Q 500 (504)
T ss_dssp T
T ss_pred H
Confidence 4
No 158
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.88 E-value=8.6e-22 Score=209.08 Aligned_cols=336 Identities=12% Similarity=0.103 Sum_probs=208.0
Q ss_pred CCCCChHHHHHHHhhhhhccCCCCCC-CCCCC------CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHH
Q 010008 101 SENFTSRAVMEAVGSCLTNKYSEGLP-GKRYY------GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN 172 (520)
Q Consensus 101 sen~~~~~V~ea~~s~l~~~y~~G~p-~~ryy------~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~ 172 (520)
+..+.++.|.+++.......|..+.. ...+. .+.+...++++.+++++++++|++++ -+...+|+ .+|
T Consensus 88 a~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~~t~g~te~a~ 163 (456)
T 2z67_A 88 RIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH----AIATPISTGMSI 163 (456)
T ss_dssp ECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE----EEEESSCHHHHH
T ss_pred ccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC----EEEeCcHHHHHH
Confidence 44467778888876543222222111 00111 11223567777889999999999864 13334566 567
Q ss_pred HHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--CCCCCCCHHHHHHHh-hh---cCCc
Q 010008 173 FEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTA-IL---FRPK 244 (520)
Q Consensus 173 ~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--~~~~~iD~d~le~~i-~~---~~pk 244 (520)
.+++.++.. +||.|++++++|.+.. +.+...|. +++.+++. .+++.+|+++|++++ +. .++.
T Consensus 164 ~~al~~~~~~~~~~~vi~~~~~h~s~~--------~~~~~~G~--~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 233 (456)
T 2z67_A 164 SLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGM--NMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP 233 (456)
T ss_dssp HHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTC--EEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHH--------HHHHHcCC--CceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeE
Confidence 766666543 7788998888765421 13344565 44444442 246789999999999 42 3677
Q ss_pred EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcc---cccccccCCCCCcccEEEeccCcccCCCCc-eEEEee
Q 010008 245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISG---LVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFK 318 (520)
Q Consensus 245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~g---li~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~ 318 (520)
+|++..++|++ ..|+++|.++|+++|+++++|+||... ........... ++|++++|+||++.||.| |+++++
T Consensus 234 ~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~ 312 (456)
T 2z67_A 234 CVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYST 312 (456)
T ss_dssp EEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEES
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEc
Confidence 77777776654 789999999999999999999886532 22111100011 589999999999877654 999996
Q ss_pred CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----CCEEecCCCC
Q 010008 319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSD 394 (520)
Q Consensus 319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G~~v~~~gt~ 394 (520)
++ ++.+.+... +.+... ... ..++..++..+...++++..++..++++++.+.|.+. |+.++.+.
T Consensus 313 ~~-----~~~~~l~~~-~~g~~~--~~~-~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-- 381 (456)
T 2z67_A 313 DA-----EFIKEISLS-YPGRAS--ATP-VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-- 381 (456)
T ss_dssp CH-----HHHHHHHTT-SCSCBC--SHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--
T ss_pred CH-----HHHhhcCcC-CCCCCC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--
Confidence 53 566666432 222211 122 3334445554444567888899999999999999885 87665542
Q ss_pred CeeEEEEecCCCCCHHHHHHHHhhcCe---EEcCCC--CCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 395 NHLVLVDLRPMGIDGARVEKILDMASI---TLNKNS--VPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI---~v~~~~--~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
.++++++...+. ..++.+.|.+.|| .+.... .+|.. .....+++|+++.. +.+++|++++++.|++++
T Consensus 382 -~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~----~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 382 -SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAI----GVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp -CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCT----TCCHHHHHHHHHHHHTC-
T ss_pred -CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhc----CCCHHHHHHHHHHHHHHh
Confidence 344556522221 3567788888876 332000 00111 11124689998664 345899999999987654
No 159
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.88 E-value=1.7e-21 Score=202.80 Aligned_cols=331 Identities=12% Similarity=0.093 Sum_probs=198.9
Q ss_pred ccceEecCCC--CChHHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHHHHH--cC-CCCCCCceeee
Q 010008 94 KSLELIASEN--FTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRALAA--FN-LDENKWGVNVQ 164 (520)
Q Consensus 94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y----~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l--fg-~~~~~~~~~V~ 164 (520)
+.|+|..+++ ++++.|++++...+.+.. ..+|+. .....+++ +.++++ +| ++++ +|.
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~------~~g~~~lr----~~la~~l~~g~~~~~----~v~ 99 (400)
T 3asa_A 34 TVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGP------DFGLPALR----QKLSEDFYRGFVDAK----EIF 99 (400)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCC------TTCCHHHH----HHHHHTTSTTSSCGG----GEE
T ss_pred ceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC------CCCCHHHH----HHHHHHHHcCCCCHH----HEE
Confidence 5678877765 468899999988775321 112321 11123444 455666 57 5654 455
Q ss_pred cCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcC
Q 010008 165 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFR 242 (520)
Q Consensus 165 ~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~ 242 (520)
+++|+ +++.++ ..+++|||+|++.+|.|.++.. .+...|.. .++.++++++ ....|+++ + + +
T Consensus 100 ~~~G~~~al~~~-~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~-~~~~~~~~~~~~~~~~l~~----~-~-~ 163 (400)
T 3asa_A 100 ISDGAKVDLFRL-LSFFGPNQTVAIQDPSYPAYLD--------IARLTGAK-EIIALPCLQENAFFPEFPE----D-T-H 163 (400)
T ss_dssp EESCHHHHHHHH-HHHHCSSCEEEEEESCCHHHHH--------HHHHTTCS-EEEEEECCGGGTTCCCCCT----T-C-C
T ss_pred EccChHHHHHHH-HHHcCCCCEEEECCCCcHHHHH--------HHHHcCCc-ceEecccchhcCcccChhh----c-c-C
Confidence 57776 777764 4566899999999998765421 22334542 1445555432 23344332 1 3 7
Q ss_pred CcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---Cc-c--cEEEeccCccc--CC
Q 010008 243 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-C--DVVTTTTHKSL--RG 309 (520)
Q Consensus 243 pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~-a--Div~~S~hK~l--~G 309 (520)
+++|+++.++||+ ..+ +++|.++|+++|+++|+|++|. ++...+..+.++ +. . ++++.|+||++ +|
T Consensus 164 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 242 (400)
T 3asa_A 164 IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG 242 (400)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT
T ss_pred ccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhh-hhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc
Confidence 8999998888886 555 6678889999999999999965 333322211112 11 3 48899999987 67
Q ss_pred CCceEEEeeCCCcch--hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE
Q 010008 310 PRGGMIFFKKDPVLG--VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK 387 (520)
Q Consensus 310 prgG~I~~~~~~~~~--~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~ 387 (520)
.|.|+++++++.... .. .+.+.........++++....++...+|+.. +.++..+++.++++.+.+.|.+.|++
T Consensus 243 lriG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~ 318 (400)
T 3asa_A 243 IRLGWTVIPQELTYADGHF-VIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLATGFE 318 (400)
T ss_dssp CCCEEEECCTTCBCTTSCB-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hheeEEeeChhhccchhhh-HHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 888999998741000 00 2222110000011223444444445566653 34567788888999999999988998
Q ss_pred EecCCCCCeeEEEE-ecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008 388 LVSGGSDNHLVLVD-LRPMGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH 465 (520)
Q Consensus 388 v~~~gt~~~~~~vd-~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~ 465 (520)
+..+ ....++|++ +. .+++..++.+ +++++||.+..+... ++..++++||+. . .+++++++.++.|.
T Consensus 319 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~~g~~f---~~~~~~~iRis~--~----~~~e~i~~~l~~l~ 387 (400)
T 3asa_A 319 VFGG-EHAPYLWVKPTQ-ANISDRDLFDFFLREYHIAITPGIGF---GRSGSGFVRFSS--L----GKREDILAACERLQ 387 (400)
T ss_dssp EEEC-SSSSEEEEECCC-TTCCTTTHHHHHHHHHSEECEEGGGG---CGGGTTCEEEEC--C----SCHHHHHHHHHHHH
T ss_pred eeCC-CCceEEEEeccC-CCCCHHHHHHHHHHhCCEEEeChhHh---CCCCCCEEEEEe--e----CCHHHHHHHHHHHH
Confidence 8754 234567877 53 3445544544 456779998543211 112356899983 2 34899999999998
Q ss_pred HHHHH
Q 010008 466 EGVEI 470 (520)
Q Consensus 466 ~~l~~ 470 (520)
++++.
T Consensus 388 ~~~~~ 392 (400)
T 3asa_A 388 MAPAL 392 (400)
T ss_dssp C----
T ss_pred HHHHh
Confidence 87753
No 160
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.88 E-value=2.9e-21 Score=208.14 Aligned_cols=309 Identities=13% Similarity=0.052 Sum_probs=195.6
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC-------C-CCC------EEEEcCCCCCccccc
Q 010008 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-------K-PHD------RIMGLDLPHGGHLSH 199 (520)
Q Consensus 134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all-------~-pGD------~Vl~~~~~~~ghls~ 199 (520)
.+...++|..+++++++++|++.+. -+...+||+||..++.++. + +|| +|++.+..|.+..
T Consensus 143 s~~~~~le~~~~~~la~l~g~~~~~---~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~-- 217 (515)
T 2jis_A 143 APVFVLMEEEVLRKLRALVGWSSGD---GIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ-- 217 (515)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSCE---EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCC---eEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH--
Confidence 3556788888999999999998531 2334556699998887763 2 686 7888877654432
Q ss_pred cccccccccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCC
Q 010008 200 GFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DFDYPRMRQIADAVGA 271 (520)
Q Consensus 200 g~~~~~~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~ 271 (520)
+.+...|.+. +++.++++ +++.+|+++|++++++. +|++|+++.++|++ ..|+++|+++|+++|+
T Consensus 218 ------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~ 290 (515)
T 2jis_A 218 ------KGAAFLGLGTDSVRVVKAD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL 290 (515)
T ss_dssp ------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred ------HHHHHcCCCCCcEEEEecC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Confidence 1223334322 44555666 46899999999999763 48899888776654 7899999999999999
Q ss_pred EEEEechhhcccccccccCCCC---CcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcc----cCCC------
Q 010008 272 LLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN----AVFP------ 337 (520)
Q Consensus 272 ~li~D~Ah~~gli~~~~~~~p~---~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~----~~~p------ 337 (520)
++++|++|..+....+.+...+ .++|++++++|||+.+|.+ |+++++++. ++.++... ..+.
T Consensus 291 ~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~----~~~~~~~~~~~~yl~~~~~~~~ 366 (515)
T 2jis_A 291 WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTS----NLLKRCHGSQASYLFQQDKFYD 366 (515)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCS----CHHHHHHCC---------CCSC
T ss_pred eEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChH----HHHHHHhcCCchhccCCccccc
Confidence 9999999877765433221112 3689999999999988876 999998730 13222100 0000
Q ss_pred --------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEecCC---
Q 010008 338 --------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPM--- 405 (520)
Q Consensus 338 --------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~~--- 405 (520)
..+.+.....+ ++..+++.+...++++..++..++++++.+.|.+ .|++++.+...+. +.+...+.
T Consensus 367 ~~~~~~~~~~~~~rr~~al-~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~-v~f~~~p~~~~ 444 (515)
T 2jis_A 367 VALDTGDKVVQCGRRVDCL-KLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN-VCFWFVPPSLR 444 (515)
T ss_dssp GGGCCGGGCSCSSCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE-EEEEECCGGGT
T ss_pred ccCCCCCCCCCCCCcccHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeE-EEEEEeCcccc
Confidence 00111100011 2222333333356788889999999999999988 4899876432233 33322221
Q ss_pred CC-CH----H-------HHHHHHhhcCeEE-cCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHHHHHHHH
Q 010008 406 GI-DG----A-------RVEKILDMASITL-NKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 406 g~-~~----~-------~~~~~L~~~gI~v-~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+. +. . .+.+.|.+.|+.+ .....++ ..+.+|+++ +..|+ ++|++++++.|.+++.
T Consensus 445 ~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~t----~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGT-----RGNFFRVVVANSALT----CADMDFLLNELERLGQ 513 (515)
T ss_dssp TCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEEECCCTTCC----HHHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECC-----ceEEEEEEeCCCCCC----HHHHHHHHHHHHHHHh
Confidence 11 10 1 2455666778654 2110011 235799988 55554 8999999999987653
No 161
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.88 E-value=1e-21 Score=204.19 Aligned_cols=324 Identities=12% Similarity=0.031 Sum_probs=209.5
Q ss_pred ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeee--cCChHHH
Q 010008 94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ--PLSGSPA 171 (520)
Q Consensus 94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~--~~sGs~A 171 (520)
..+++.+++..+|+.|++++..... .. .++. +++ ..+ .++.+.+++++++++|++.++ +|. ..+|++|
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~~-~~-~~~~--~~~--~~~-~~~~~~~~~~la~~~g~~~~~---~i~~~t~g~t~a 109 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTAA-AL-FGTS--HRQ--APV-KNLVGRVRSGLAELFSLPDGY---EVILGNGGATAF 109 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTTT-TT-TTSC--TTS--HHH-HHHHHHHHHHHHHHTTCCTTC---EEEEEETCHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcCC-Cc-cCcC--cCC--HHH-HHHHHHHHHHHHHHhCCCCCc---eEEEeCCchhHH
Confidence 4677888888899999999976310 10 0110 111 222 233345678999999997421 333 3556699
Q ss_pred HHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccc--cceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008 172 NFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 248 (520)
Q Consensus 172 ~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~--g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~ 248 (520)
+.+++.++++|| |.| ....|+. ... ...... |. +++.++++ ++..+|. .+++ +||+|++
T Consensus 110 l~~~~~~l~~~gv~~v--~~~~~~~----~~~---~~~~~~~~g~--~~~~v~~~-~g~~~~~-----~i~~-~~~~v~~ 171 (398)
T 2fyf_A 110 WDAAAFGLIDKRSLHL--TYGEFSA----KFA---SAVSKNPFVG--EPIIITSD-PGSAPEP-----QTDP-SVDVIAW 171 (398)
T ss_dssp HHHHHHHTCSSCEEEE--ECSHHHH----HHH---HHHHHCTTSC--CCEEEECC-TTCCCCC-----CCCT-TCSEEEE
T ss_pred HHHHHHHhcCCCeEEE--eCCHHHH----HHH---HHHHHhCCCC--ceEEEecC-CCCCCCc-----cccC-CCCEEEE
Confidence 999999999998 444 2222210 000 011112 33 33444454 2333332 1444 7999998
Q ss_pred cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCC-ceEEEeeCCCcchh
Q 010008 249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGV 325 (520)
Q Consensus 249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~ 325 (520)
+.++||+ ..|+++|.++ +|++|++|++|..|.... .+..+|++++|+||+++++. .|++++++
T Consensus 172 ~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~-----~~~~~di~~~s~sK~~~~~gg~g~l~~~~------ 237 (398)
T 2fyf_A 172 AHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPV-----DIAETDAYYFAPQKNFASDGGLWLAIMSP------ 237 (398)
T ss_dssp ESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCC-----CGGGCSEEEECTTSTTCSCSSEEEEEECH------
T ss_pred eCcCCCcceecchHHhhhh---cCCeEEEEeccccCCccc-----CcccCcEEEEecCcccCCCCceEEEEECH------
Confidence 8887776 7788888777 899999999987664321 22347999999999997663 48888887
Q ss_pred hHHHhhccc---------CC-----------CCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHC
Q 010008 326 ELESAINNA---------VF-----------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVEL 384 (520)
Q Consensus 326 ~l~~~i~~~---------~~-----------p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~ 384 (520)
++.+++... .+ ....++++...++++..+++.+...+ +++..+++.++++.+.+.|.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~ 317 (398)
T 2fyf_A 238 AALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER 317 (398)
T ss_dssp HHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc
Confidence 555444210 00 12235677777777777887655444 6788889999999999999886
Q ss_pred -CCEEec--C-CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008 385 -GYKLVS--G-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI 460 (520)
Q Consensus 385 -G~~v~~--~-gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l 460 (520)
|+++.. + +..++++++++. .+++..++.+.|.+.||.+.. |.. ....+.|||++...+ +++|++++
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~gI~v~~----g~~-~~~~~~iRis~~~~~----t~e~i~~~ 387 (398)
T 2fyf_A 318 PYTTPFVTDPGLRSQVVGTIDFV-DDVDAGTVAKILRANGIVDTE----PYR-KLGRNQLRVAMFPAV----EPDDVSAL 387 (398)
T ss_dssp TTEEESCCSGGGBCSSEEEEEEC-TTSCHHHHHHHHHHTTCBCCS----CCT-TTCSSEEEEECCTTS----CHHHHHHH
T ss_pred CCceeccCChhhcCCcEEEEECC-CCCCHHHHHHHHHHCCcEEec----Ccc-cCCCCEEEEEecCCC----CHHHHHHH
Confidence 888774 2 112336777774 356788888888888999853 211 123578999987544 48999999
Q ss_pred HHHHHHHHH
Q 010008 461 ADFIHEGVE 469 (520)
Q Consensus 461 a~~i~~~l~ 469 (520)
++.|+++++
T Consensus 388 ~~~l~~~l~ 396 (398)
T 2fyf_A 388 TECVDWVVE 396 (398)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 162
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.88 E-value=1.2e-21 Score=203.48 Aligned_cols=348 Identities=15% Similarity=0.171 Sum_probs=205.8
Q ss_pred ccccChH-HHHHHHHHHHHhh-ccceEecCC--C-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 010008 74 LGEADPE-VCEIITKEKERQF-KSLELIASE--N-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 144 (520)
Q Consensus 74 l~~~d~~-~~~~~~~e~~~~~-~~i~Liase--n-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a 144 (520)
+....+. ++.+......... +.|+|..++ + ++.+.|.+++...+.+....+|+. ..| ..++.+..
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g---~~~lr~~i 80 (401)
T 7aat_A 7 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP---IAG---LADFTRAS 80 (401)
T ss_dssp CCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC---TTC---CHHHHHHH
T ss_pred CCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCC---CCC---CHHHHHHH
Confidence 3444443 4554433332222 358887655 2 223578888887665333344543 122 23444444
Q ss_pred HHHHHHHcCCC--CCCCceeeecCChH-HHHHHHHHhh---CCCCCEEEEcCCCCCccccccccccccccccccceEEEE
Q 010008 145 QKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM 218 (520)
Q Consensus 145 ~~~~~~lfg~~--~~~~~~~V~~~sGs-~A~~~~l~al---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v 218 (520)
.+++.+.+|.+ ++++ .+..|+|+ +|+..++.++ ++|||+|++++|.|.++.. .+...|. +++
T Consensus 81 a~~~~~~~~~~~~~~~i--~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~--~~~ 148 (401)
T 7aat_A 81 AELALGENSEAFKSGRY--VTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGL--QLQ 148 (401)
T ss_dssp HHHHHCTTCHHHHTTCE--EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTC--EEE
T ss_pred HHHhcCCCccccccCce--EEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHH--------HHHHcCC--eeE
Confidence 44554444432 4422 11225555 9999877665 4999999999998876532 2334565 566
Q ss_pred EcccC-CCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccccc-
Q 010008 219 PYRLD-ESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV- 289 (520)
Q Consensus 219 ~~~~d-~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~- 289 (520)
.++++ ++++.+|++++++.++.. ++++++++.++||+ .+ ++++|.++|+++|+++++|++|. ++...+..
T Consensus 149 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~ 227 (401)
T 7aat_A 149 AYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ-GFASGDINR 227 (401)
T ss_dssp EEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHHH
T ss_pred eeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccc-cccCCCccc
Confidence 66653 236889999887776532 57889999999987 33 47788899999999999999953 43333210
Q ss_pred -CCCC------CcccEEEeccCccc--CCCCceEEEeeCCCcchhh----HHHhhcccCCCCCCCCChHHHHHHHHHHHH
Q 010008 290 -ADPF------KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLK 356 (520)
Q Consensus 290 -~~p~------~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~----l~~~i~~~~~p~~~g~p~~~~iaala~al~ 356 (520)
..++ ....+++.|+||++ +|+|.|+++...... + +...+.....+...+.+ ....++.+.++.
T Consensus 228 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 303 (401)
T 7aat_A 228 DAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDA---EEAKRVESQLKILIRPMYSNPP-MNGARIASLILN 303 (401)
T ss_dssp HTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSH---HHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCH---HHHHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhC
Confidence 0001 12347889999987 688889988733100 2 22333222112222222 222222222232
Q ss_pred H--hc---CchhHHHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC
Q 010008 357 H--AQ---SPEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS 427 (520)
Q Consensus 357 ~--~~---~~~~~~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~ 427 (520)
. +. ....++..+++.++++.+.+.|.+.| +.+..+. .+.+.|++ ++.+.+..+|+++||.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~ll~~~gi~v~--- 374 (401)
T 7aat_A 304 TPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQ-IGMFCFTG-----LKPEQVERLTKEFSIYMT--- 374 (401)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHC-CSSEEECC-----CCHHHHHHHHHHHCEECC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCC-cceEEecC-----CCHHHHHHHHHhCCEecc---
Confidence 1 00 12345667788889999999998865 4433321 23444543 346778778899999983
Q ss_pred CCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 428 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 428 ~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
| ++||++..+| ++|++++++.|++++
T Consensus 375 -~---------~~Ris~~~~~-----~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 375 -K---------DGRISVAGVA-----SSNVGYLAHAIHQVT 400 (401)
T ss_dssp -T---------TCEEEGGGCC-----TTTHHHHHHHHHHHH
T ss_pred -C---------CCeEEeccCC-----hhhHHHHHHHHHHHh
Confidence 2 3699876544 467999999998765
No 163
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.88 E-value=1.7e-21 Score=203.69 Aligned_cols=347 Identities=16% Similarity=0.160 Sum_probs=212.8
Q ss_pred hhccccChH-HHHHHHHHHHHh-hccceEecCC----C---CChHHHHHHHhhhh-hccCCCCCCCCCCCCcchhHHHHH
Q 010008 72 YSLGEADPE-VCEIITKEKERQ-FKSLELIASE----N---FTSRAVMEAVGSCL-TNKYSEGLPGKRYYGGNEYIDELE 141 (520)
Q Consensus 72 ~~l~~~d~~-~~~~~~~e~~~~-~~~i~Liase----n---~~~~~V~ea~~s~l-~~~y~~G~p~~ryy~g~~~~d~lE 141 (520)
..+....++ ++.+..+.+... .+.|+|..++ + ++++.|.+|+. .+ ......+|+. ..|. .++.
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~---~~G~---~~lr 78 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLL---GNGT---EDFS 78 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCT---TSSC---HHHH
T ss_pred hcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCC---CCCc---HHHH
Confidence 446666665 566655443322 3668998764 2 36789999876 43 2222334433 1232 3555
Q ss_pred HHHHHHHHHHcCCCC-CCCceeeecCChH-HHHHHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEE
Q 010008 142 TLCQKRALAAFNLDE-NKWGVNVQPLSGS-PANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 217 (520)
Q Consensus 142 ~~a~~~~~~lfg~~~-~~~~~~V~~~sGs-~A~~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~ 217 (520)
+...+++.+..+... +++ ++|..|+|+ +|+..++.++++ | |+|++++|.|.++.. .+...|. ++
T Consensus 79 ~aia~~~~~~~~~~~~~~~-i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~--------~~~~~g~--~~ 146 (405)
T 3k7y_A 79 TLTQNLIFGNNSKYIEDKK-ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN--------MIESRGF--NL 146 (405)
T ss_dssp HHHHHHHHCSSCTTTTTTC-EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH--------HHHTTTC--EE
T ss_pred HHHHHHHcCCCCccccccc-eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH--------HHHHcCC--eE
Confidence 555556544443321 112 234456666 899999988877 9 999999998865531 3445565 67
Q ss_pred EEccc-CCCCCCCCHHHHHHHhhhc-CCcEEEEcCC-CCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008 218 MPYRL-DESTGLVDYDMLEKTAILF-RPKLIIAGAS-AYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV 289 (520)
Q Consensus 218 v~~~~-d~~~~~iD~d~le~~i~~~-~pklIi~~~s-~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~ 289 (520)
+.+++ +++++.+|++++++.+++. ++++|+++.+ +||+ .+ .+++|.++|+++|+++|+|++ |.++.+.+..
T Consensus 147 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~-Y~~l~~~~~~ 225 (405)
T 3k7y_A 147 KYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIA-YQGFGHTNLE 225 (405)
T ss_dssp EEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEES-CTTTSSSSTT
T ss_pred EEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecC-cccccCCCcc
Confidence 77766 4446889999999998753 4678888765 7997 44 467788899999999999998 4566543211
Q ss_pred --CCC---C-C-c-ccEEEeccCccc--CCCCceEEEee--CCCcchhhHHHhh----cccCCCCCCCCChHHHHHHHHH
Q 010008 290 --ADP---F-K-Y-CDVVTTTTHKSL--RGPRGGMIFFK--KDPVLGVELESAI----NNAVFPGLQGGPHNHTIGGLAV 353 (520)
Q Consensus 290 --~~p---~-~-~-aDiv~~S~hK~l--~GprgG~I~~~--~~~~~~~~l~~~i----~~~~~p~~~g~p~~~~iaala~ 353 (520)
..+ + . + --+++.|++|++ +|+|.||+++. +. ++.+++ .......... ++....++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~-~~~~~q~~~~~ 299 (405)
T 3k7y_A 226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQ-----EEKKIVFNNLCFIVRKFYSS-PVIHTNRILCQ 299 (405)
T ss_dssp GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSH-----HHHHHHHHHHHHHHHTTTSS-CCHHHHHHHHH
T ss_pred cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCH-----HHHHHHHHHHHHHHhcccCC-CcHHHHHHHHH
Confidence 001 1 1 1 127789999986 69999998652 21 333332 2211111222 23233223333
Q ss_pred HHHHh--c---CchhHHHHHHHHHHHHHHHHHHH----HCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcC
Q 010008 354 CLKHA--Q---SPEFKVYQNKVVSNCRALASRLV----ELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420 (520)
Q Consensus 354 al~~~--~---~~~~~~~~~~i~~na~~l~~~L~----~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~g 420 (520)
++..- . ..+.+.+.+++.++++.+.+.|. +.| +.+..+ ..+.++|+++. .+.+. .|+++|
T Consensus 300 ~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p-~gg~f~~~~l~-----~~~~~-~L~~~g 372 (405)
T 3k7y_A 300 LLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK-QRGLFSFVPLL-----AKIAE-HLKTHH 372 (405)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS-CCSSEEECGGG-----GGGTT-TTTTTT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC-CceEEEecCCC-----HHHHH-HHHHCC
Confidence 34321 0 11235667778999999999998 766 344433 23455565543 23343 458899
Q ss_pred eEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 421 I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
|.+ .|| + ||+... .++++++++++.|+++++
T Consensus 373 V~v----~p~--------~-Ris~a~-----~~~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 373 IYI----INN--------G-RINVSG-----ITKNNVDYIADKICLSLS 403 (405)
T ss_dssp EEC----CTT--------S-EEEGGG-----CCTTHHHHHHHHHHHHHH
T ss_pred Eee----cCC--------C-eEEEec-----cCHHHHHHHHHHHHHHHh
Confidence 998 443 2 998653 457999999999999875
No 164
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.88 E-value=1.9e-20 Score=192.42 Aligned_cols=310 Identities=15% Similarity=0.126 Sum_probs=194.9
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHh---hC-
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---IL- 180 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~a---ll- 180 (520)
.++.+++++...+.+. +.+..+| . .+...++ ++++++++|++ ++ .+...+|++|+.+++.+ +.
T Consensus 45 ~~~~v~~a~~~~~~~~---~~~~~~y-~-~~~~~~l----~~~la~~~g~~-~~---v~~~~g~t~a~~~~~~~~~~~~~ 111 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL---LHVSNLY-E-NPWQEEL----AHKLVKHFWTE-GK---VFFANSGTESVEAAIKLARKYWR 111 (375)
T ss_dssp SCHHHHHHHHHHHHHC---SCCCTTB-C-CHHHHHH----HHHHHHTSSSC-EE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc---cccCccc-C-CHHHHHH----HHHHHhhcCCC-Ce---EEEeCchHHHHHHHHHHHHHHhc
Confidence 6899999998887542 1222233 2 2333334 37788899983 32 23345556999988865 45
Q ss_pred --CCC-CEEEEcCCCCCccccccccccccccccccce---EEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008 181 --KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 254 (520)
Q Consensus 181 --~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~---~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p 254 (520)
+|| |+|++.++.|.+............+...+.. -....++ .+|+++|++++++ ++++|+++.++||
T Consensus 112 ~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~~~~~~ 184 (375)
T 2eh6_A 112 DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAK------LNDIDSVYKLLDE-ETAGIIIEVIQGE 184 (375)
T ss_dssp HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEEC------TTCHHHHHTTCCT-TEEEEEECSEETT
T ss_pred cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCC------CchHHHHHHHhcC-CeEEEEEeCccCC
Confidence 889 9999999987544211100000000000100 0011111 2589999999986 8999999888877
Q ss_pred C--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-CCCceEEEeeCCCcch
Q 010008 255 R--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLG 324 (520)
Q Consensus 255 ~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-GprgG~I~~~~~~~~~ 324 (520)
+ ..+ +++|.++|+++|+++|+|++|. ++...+... ..+. ..|++++| |++. |+|.|++++++
T Consensus 185 tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~----- 256 (375)
T 2eh6_A 185 GGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-GIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILARE----- 256 (375)
T ss_dssp TTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEH-----
T ss_pred CCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcH-----
Confidence 4 447 9999999999999999999976 332222100 0111 37888555 9884 45679999987
Q ss_pred hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecC
Q 010008 325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP 404 (520)
Q Consensus 325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~ 404 (520)
++.+.+.........+++.....++ ..+|+... ++.+++.++++.+.+.|.+.+...+.+ ...++++++..
T Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~~--~g~~~~~~~~~ 327 (375)
T 2eh6_A 257 -EVAQSFTPGSHGSTFGGNPLACRAG-TVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGKVKG--RGLMLGLELER 327 (375)
T ss_dssp -HHHTTCCTTSCCCSSTTCHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSEEEE--ETTEEEEECSS
T ss_pred -HHHhhhcCCCCCCCCCCCHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCceE--EEEEEEEEEcC
Confidence 6766665532333344444444433 33555432 567788888999999998866533332 24566777743
Q ss_pred CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 405 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 405 ~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
+..++.+.|.+.||.+.. + .++++||+.+.. .+++|++++++.|+++
T Consensus 328 ---~~~~~~~~l~~~gi~~~~----~-----~~~~iRi~~~~~----~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 328 ---ECKDYVLKALEKGLLINC----T-----AGKVLRFLPPLI----IQKEHIDRAISVLREI 374 (375)
T ss_dssp ---CCHHHHHHHHHTTEECEE----E-----TTTEEEECCCTT----CCHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHCCCEEec----C-----CCCEEEEECCCC----CCHHHHHHHHHHHHHh
Confidence 356677778789999843 2 257899997643 3589999999998765
No 165
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.88 E-value=2.4e-21 Score=207.09 Aligned_cols=331 Identities=12% Similarity=0.015 Sum_probs=210.2
Q ss_pred hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCC------ceeeecCChHHHHHHHHHhh
Q 010008 106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW------GVNVQPLSGSPANFEVYTAI 179 (520)
Q Consensus 106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~------~~~V~~~sGs~A~~~~l~al 179 (520)
+..+.+++.+.+ |.+..+ |...+...++|+.+++++++++|++.+.. ...+.+.+||+||+.++.++
T Consensus 87 ~~~~~~~~~~~~-n~~~~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~ 159 (486)
T 1js3_A 87 PAMLADMLCGAI-GCIGFS------WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAA 159 (486)
T ss_dssp HHHHHHHHHHHH-CCCCSS------GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CcCccc------cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHH
Confidence 345677777665 333222 33345678899999999999999985310 11245566779999888776
Q ss_pred CCC---------CC--------E--EEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh
Q 010008 180 LKP---------HD--------R--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240 (520)
Q Consensus 180 l~p---------GD--------~--Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~ 240 (520)
.++ || + |+++++.|.+.. +.+...|. +++.++++ +++.+|+++|++++++
T Consensus 160 ~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~--------~~~~~~G~--~v~~v~~d-~~~~~d~~~L~~~i~~ 228 (486)
T 1js3_A 160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE--------RAGLIGGV--KLKAIPSD-GKFAMRASALQEALER 228 (486)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHH
T ss_pred HHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH--------HHHHhCCC--ceEEeecC-CCCCCCHHHHHHHHHH
Confidence 321 43 3 667777654321 23445565 56666776 5789999999999976
Q ss_pred cCC------cEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC---CCCCcccEEEeccCcccCC
Q 010008 241 FRP------KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRG 309 (520)
Q Consensus 241 ~~p------klIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~---~p~~~aDiv~~S~hK~l~G 309 (520)
++ .+|+++.++|++ ..|+++|.++|+++|+++++|+||..+........ ..+.++|++++++||++.+
T Consensus 229 -~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~ 307 (486)
T 1js3_A 229 -DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV 307 (486)
T ss_dssp -HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC
T ss_pred -HHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCC
Confidence 44 377777666554 78999999999999999999999876654332111 1234689999999999977
Q ss_pred CCc-eEEEeeCCCcchhhH-HHhhccc---CCC--------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010008 310 PRG-GMIFFKKDPVLGVEL-ESAINNA---VFP--------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 370 (520)
Q Consensus 310 prg-G~I~~~~~~~~~~~l-~~~i~~~---~~p--------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i 370 (520)
|.+ |+++++++ .+ .+.+... ... ..+++... ...++..+++.+...+++++.++.
T Consensus 308 p~~~G~l~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~ 381 (486)
T 1js3_A 308 NFDCSAMWVKRR-----TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKH 381 (486)
T ss_dssp CSSCEEEEESCH-----HHHHGGGC------------CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEeCH-----HHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHH
Confidence 644 99999873 32 3333110 000 00111111 123444455544445678889999
Q ss_pred HHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccc
Q 010008 371 VSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT 449 (520)
Q Consensus 371 ~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt 449 (520)
.++++++.+.|.+. |++++.+. ..+++.+.+.+......++.+.|.+.|+.+.. |+. ....+.+|+++...
T Consensus 382 ~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~---~~~--~~~~~~lRi~~~~~-- 453 (486)
T 1js3_A 382 VQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNEALLERINSARKIHLV---PCR--LRGQFVLRFAICSR-- 453 (486)
T ss_dssp HHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEESSCHHHHHHHHHHHHHHTSCBCE---EEE--ETTEEEEEEECCCT--
T ss_pred HHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEecChHHHHHHHHHHHHhcCCEEEE---EEE--ECCEEEEEEEeCCC--
Confidence 99999999999884 89987542 23444444432110135677777777765311 111 01246899985322
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 010008 450 RGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 450 ~g~~~~d~~~la~~i~~~l~~ 470 (520)
..+++|++++.+.|.++++.
T Consensus 454 -~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 454 -KVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp -TCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHH
Confidence 23589999999999888754
No 166
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.87 E-value=6.2e-21 Score=206.40 Aligned_cols=341 Identities=14% Similarity=0.150 Sum_probs=208.3
Q ss_pred cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-C-CCCCCCceeeecCChH-H
Q 010008 95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-N-LDENKWGVNVQPLSGS-P 170 (520)
Q Consensus 95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g-~~~~~~~~~V~~~sGs-~ 170 (520)
.|+|..++. ..++.+++++...+.. .+|+ .......++++...+++.+.+ + ++.+.. -+|.+++|+ +
T Consensus 105 ~i~l~~g~~~~~~~~~v~a~~~~~~~---~~y~-----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~~i~~t~G~t~ 175 (533)
T 3f6t_A 105 AVNYCHTELGLNRDKVVAEWVNGAVA---NNYP-----VPDRCLVNTEKIINYFLQELSYKDANLAEQ-TDLFPTEGGTA 175 (533)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHT---CSCC-----SSSSCCHHHHHHHHHHHHHHHTTTCCCGGG-EEEEEEEHHHH
T ss_pred heeccCCCCCcCCcHHHHHHHHHHHh---CCCC-----CCcccHHHHHHHHHHHHHHhcCCCCCCCCc-ceEEEECCHHH
Confidence 355554442 3466776666555542 1222 111223466666667776662 3 332211 255667776 8
Q ss_pred HHHHHHHh-----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC---CCCCCCCHHHHHHHhhhcC
Q 010008 171 ANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---ESTGLVDYDMLEKTAILFR 242 (520)
Q Consensus 171 A~~~~l~a-----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d---~~~~~iD~d~le~~i~~~~ 242 (520)
|+..++.+ +++|||+|++++|.|.++.. .+...|. .++.++++ .+++.+|+++|++++++ +
T Consensus 176 al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~ 244 (533)
T 3f6t_A 176 AIVYAFHSLAENHLLKKGDKIAINEPIFTPYLR--------IPELKDY--ELVEVDLHSYEKNDWEIEPNEIEKLKDP-S 244 (533)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHT--------SGGGGGS--EEEEECCCEETTTTSEECHHHHHHHSCT-T
T ss_pred HHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHH--------HHHHcCC--eEEEEEecCCcccCCCCCHHHHHHHhCC-C
Confidence 99999888 79999999999998865532 2334555 44444443 24578999999999987 8
Q ss_pred CcEEEEcCCCCCC--CCCHH---HHHHHHH-HhCCEEEEechhhcccccccccCCCC---CcccEEEeccCccc--CCCC
Q 010008 243 PKLIIAGASAYPR--DFDYP---RMRQIAD-AVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPR 311 (520)
Q Consensus 243 pklIi~~~s~~p~--~~d~~---~i~~ia~-~~g~~li~D~Ah~~gli~~~~~~~p~---~~aDiv~~S~hK~l--~Gpr 311 (520)
+|+|++..++||+ ..+.+ +|.++|+ ++|+++|+|++|. ++.... .... ...++++.|+||++ +|+|
T Consensus 245 ~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~-~~~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~R 321 (533)
T 3f6t_A 245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYG-AFVPNF--KSIYSVVPYNTMLVYSYSKLFGCTGWR 321 (533)
T ss_dssp EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG-GGSTTC--CCHHHHSGGGEEEEEESHHHHTCGGGC
T ss_pred CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcc-ccccCc--cCHhhcCCCCEEEEecCcccCCCcccc
Confidence 9999998888886 55555 7778888 5899999999965 444321 1111 13458999999987 6888
Q ss_pred ceEEEeeCCCcchhhHHHhh--------------------------------cccCCCCCCCCChHHHHHHHHH-HHHHh
Q 010008 312 GGMIFFKKDPVLGVELESAI--------------------------------NNAVFPGLQGGPHNHTIGGLAV-CLKHA 358 (520)
Q Consensus 312 gG~I~~~~~~~~~~~l~~~i--------------------------------~~~~~p~~~g~p~~~~iaala~-al~~~ 358 (520)
.|+++++++.. ...+.+.+ .........+.+...+.+ ++. ++..+
T Consensus 322 iG~l~~~~~~~-~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a-~a~~a~~~L 399 (533)
T 3f6t_A 322 LGVIALNEKNV-FDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIM-EALFSMTHL 399 (533)
T ss_dssp EEEEEEESSCH-HHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHH-HHHHHHHHH
T ss_pred eEEEEECcHHH-HHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHH-HHHHHHHHH
Confidence 99999988410 00021111 111111112333333333 221 22222
Q ss_pred --------cCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-----C----------CCH-HHHHH
Q 010008 359 --------QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-----G----------IDG-ARVEK 414 (520)
Q Consensus 359 --------~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-----g----------~~~-~~~~~ 414 (520)
.....++..+.+.++++.+.+.|. .++.+..+ ....++|+++... + .+. +.+.+
T Consensus 400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~-~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 477 (533)
T 3f6t_A 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDT-NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLK 477 (533)
T ss_dssp TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTT-BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCC-CceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHH
Confidence 122346667778888889999986 66654433 2345667777420 1 233 44667
Q ss_pred HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 415 ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 415 ~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
+|++.||.+. ||.......+++||++.. .++++++++++.|.++++..
T Consensus 478 ll~~~GV~v~----pg~~f~~~~~~iRls~a~-----~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 478 LAEKNGVVLV----DGVGFGAKPGELRVSQAN-----LPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HHHHTTSSSC----TTEEECSSTTEEEEESSS-----SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEe----CCcccCCCCCEEEEEEee-----CCHHHHHHHHHHHHHHHHHH
Confidence 7788999984 443211135789999743 45799999999999988754
No 167
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.87 E-value=1e-20 Score=195.95 Aligned_cols=312 Identities=11% Similarity=0.049 Sum_probs=200.3
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCC--
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP-- 182 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~p-- 182 (520)
.+|.|.+++...+.+ +..++. . | ..+...+++ +++++++|.+. .+..++|++|+.+++.++..+
T Consensus 53 ~~p~v~~a~~~~~~~-~~~~~~--~-~-~~~~~~~l~----~~la~~~g~~~-----v~~~~~gt~a~~~al~~~~~~~~ 118 (392)
T 3ruy_A 53 RHPKIINALIDQANR-VTLTSR--A-F-HSDQLGPWY----EKVAKLTNKEM-----VLPMNTGAEAVETAIKTARRWAY 118 (392)
T ss_dssp TCHHHHHHHHHHHTT-CSCCCT--T-S-EETTHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cccccc--c-c-CCHHHHHHH----HHHHHhcCCCE-----EEEeCcHHHHHHHHHHHHHHhhh
Confidence 579999999887753 222211 1 2 233444444 67888898432 244567789999988877544
Q ss_pred --------CCEEEEcCCCCCccccccccccccccc---cccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008 183 --------HDRIMGLDLPHGGHLSHGFMTPKRRVS---GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 251 (520)
Q Consensus 183 --------GD~Vl~~~~~~~ghls~g~~~~~~~v~---~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s 251 (520)
||+|++.++.|.|.............. +.........++ ..|+++|++++++ ++++|++..+
T Consensus 119 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~~~ 191 (392)
T 3ruy_A 119 DVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIP------YGDLEALKAAITP-NTAAFILEPI 191 (392)
T ss_dssp HTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEEC------TTCHHHHHHHCCT-TEEEEEECSS
T ss_pred hccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeC------cccHHHHHHHhcc-CeEEEEEeCc
Confidence 789999999875542111000000000 000000122222 1289999999986 8999999888
Q ss_pred CCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC-CC-CC-cccEEEeccCcccCC--CCceEEEeeCC
Q 010008 252 AYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DP-FK-YCDVVTTTTHKSLRG--PRGGMIFFKKD 320 (520)
Q Consensus 252 ~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p-~~-~aDiv~~S~hK~l~G--prgG~I~~~~~ 320 (520)
+||+ ..+ +++|+++|+++|++||+|++|. |+...+... .. .. ..|++++| |+++| .|+|++++++
T Consensus 192 ~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~- 267 (392)
T 3ruy_A 192 QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-GLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANR- 267 (392)
T ss_dssp BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECH-
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECH-
Confidence 8875 566 9999999999999999999984 443322111 00 11 36787654 99977 7899999987
Q ss_pred CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCC---EEecCCCCCee
Q 010008 321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY---KLVSGGSDNHL 397 (520)
Q Consensus 321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~---~v~~~gt~~~~ 397 (520)
++.+.+......+..+ ++...+++...+++.... ++..+++.++++++.+.|.+.+. ....+ ...+
T Consensus 268 -----~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~ 336 (392)
T 3ruy_A 268 -----DILGVFEPGSHGSTFG-GNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVRG--KGLF 336 (392)
T ss_dssp -----HHHTTCCTTSSCCSST-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE--ETTE
T ss_pred -----HHHhhhccCCcCCCCC-CCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEEe--eeeE
Confidence 6777665543333333 344455555556665432 45677888889999999987652 22222 2345
Q ss_pred EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
+++.+.. +..++.+.|.+.||.+. |+ .++.+|++.+.. .+++|++++++.|++++
T Consensus 337 ~~~~~~~---~~~~l~~~l~~~gi~v~----~~-----~~~~iRi~~~~~----~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 337 IGIELNE---PARPYCEQLKAAGLLCK----ET-----HENVIRIAPPLV----ISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EEEEESS---CSHHHHHHHHTTTEECC----CB-----TTTEEEECCCTT----CCHHHHHHHHHHHHHHH
T ss_pred EEEEEcc---hHHHHHHHHHHCCcEEe----cC-----CCCEEEEECCCC----CCHHHHHHHHHHHHHHh
Confidence 5666643 56778888889999984 33 257899987654 35899999999998875
No 168
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.87 E-value=1.9e-20 Score=195.69 Aligned_cols=289 Identities=18% Similarity=0.137 Sum_probs=190.6
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 212 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g 212 (520)
|.+..++++ +++++++|.+. .|..++|++|+..++.++++|||+|+++++.|++...... ..+...|
T Consensus 60 ~~~~~~~l~----~~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g 126 (404)
T 1e5e_A 60 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE----HALTKFG 126 (404)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred cChHHHHHH----HHHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcC
Confidence 455555555 67888899862 3556888999999999999999999999998865432110 0123345
Q ss_pred ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHH-hCCEEEEechhhccccccccc
Q 010008 213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVV 289 (520)
Q Consensus 213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~-~g~~li~D~Ah~~gli~~~~~ 289 (520)
. +++.++++ |++++++++++ ++|+|++++++||+ .+|+++|.++|++ +|+++++|++|..+...
T Consensus 127 ~--~~~~v~~~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~---- 193 (404)
T 1e5e_A 127 I--QVDFINTA------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT---- 193 (404)
T ss_dssp C--EEEEECTT------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC----
T ss_pred C--EEEEECCC------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC----
Confidence 4 56665543 78999999987 89999999998886 7899999999999 99999999998755421
Q ss_pred CCCCC-cccEEEeccCcccCCC--C-ceEEEeeCCCcchhhHHH-hhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhH
Q 010008 290 ADPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364 (520)
Q Consensus 290 ~~p~~-~aDiv~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~l~~-~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~ 364 (520)
.|+. ++|++++|+||++.|| | +|++++++ ++.+ ++.........++.+....++...+++ ...
T Consensus 194 -~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~------~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~-----~~~ 261 (404)
T 1e5e_A 194 -NPVDFGVDVVVHSATKYINGHTDVVAGLICGKA------DLLQQIRMVGIKDITGSVISPHDAWLITRGLS-----TLN 261 (404)
T ss_dssp -CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT-----THH
T ss_pred -CccccCCEEEEEcCccccCCCCCCeEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh-----HHH
Confidence 2333 6899999999998654 5 49999988 5555 665543221012223222222222333 234
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CE-EecCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC
Q 010008 365 VYQNKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS 427 (520)
Q Consensus 365 ~~~~~i~~na~~l~~~L~~~G-~~-v~~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~ 427 (520)
.+.++..+|++.+.+.|++.. +. +..++ ....++.+++.. ..+.+.++|++.||.+....
T Consensus 262 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~i~~~~~s 338 (404)
T 1e5e_A 262 IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS---GFEGAKKLLDNLKLITLAVS 338 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHHTCSSSEESSC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC---CHHHHHHHHHhCCCceeccC
Confidence 456667788888888887753 21 11111 013455667742 13567788999998543211
Q ss_pred CCCC----------C------------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 428 VPGD----------K------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 428 ~Pg~----------~------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
.|. . ....++.|||+... +|++++.+.|++++...
T Consensus 339 -~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--------e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 339 -LGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--------EDADELIADFKQGLDAL 395 (404)
T ss_dssp -CCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--------SCHHHHHHHHHHHHHHH
T ss_pred -CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--------CCHHHHHHHHHHHHHHH
Confidence 121 0 00115789998652 68888888888887643
No 169
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.87 E-value=4.6e-21 Score=193.94 Aligned_cols=282 Identities=14% Similarity=0.103 Sum_probs=186.6
Q ss_pred HHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC
Q 010008 145 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 224 (520)
Q Consensus 145 ~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~ 224 (520)
++++++++|++ + .|.++||++|+..++.++++|||+|+++++.|.++...... .....|. +++.++.
T Consensus 4 ~~~la~~~g~~-~----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~~~~~g~--~~~~~~~-- 70 (331)
T 1pff_A 4 EGKIAKLEHAE-A----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEH----QLRKFGV--EVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHT----HHHHTTC--EEEEECT--
T ss_pred HHHHHHHhCCC-e----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHH----HHHhcCC--EEEEeCC--
Confidence 36788899987 3 46679999999999999999999999999988664321100 0112344 5555443
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHH-hCCEEEEechhhcccccccccCCCCC-cccEEE
Q 010008 225 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFK-YCDVVT 300 (520)
Q Consensus 225 ~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~-~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~ 300 (520)
+|++++++.+++ ++++|++++++||+ ..|+++|.++|++ +|+++++|++|..|.... ++. ++|+++
T Consensus 71 ----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~-----~~~~~~d~~~ 140 (331)
T 1pff_A 71 ----AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN-----PLDLGVDIVV 140 (331)
T ss_dssp ----TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC-----GGGGTCSEEE
T ss_pred ----CCHHHHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC-----hhhcCCcEEE
Confidence 578899999987 89999999888876 7899999999999 999999999998765422 222 589999
Q ss_pred eccCcccCCC--C-ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008 301 TTTHKSLRGP--R-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 377 (520)
Q Consensus 301 ~S~hK~l~Gp--r-gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l 377 (520)
+|+||++.|| | +|+++++++ ++.+++......+..++++....++...+++. .....++..++.+.+
T Consensus 141 ~s~~K~~~~~~~r~~G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~ 210 (331)
T 1pff_A 141 HSATKYINGHTDVVAGLVCSRAD-----IIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKRAAENAQKV 210 (331)
T ss_dssp EETTTTTSSSSSCCCEEEEECHH-----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred EECccccCCCCCceEEEEEeCcH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHHHHHHHHHHHH
Confidence 9999998765 4 689999863 46666655443312223333332222223432 233445566777777
Q ss_pred HHHHHHC-C--------------CEEecC--CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCC----------
Q 010008 378 ASRLVEL-G--------------YKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG---------- 430 (520)
Q Consensus 378 ~~~L~~~-G--------------~~v~~~--gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg---------- 430 (520)
.+.|++. . +++..+ ....+++.+.+. +.+.+.+.|++.||.+...+..+
T Consensus 211 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~ 286 (331)
T 1pff_A 211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPAS 286 (331)
T ss_dssp HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHH
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHhCCCceeccCCCCcceeeecchh
Confidence 7777653 1 111110 012344555543 56788899999999775431111
Q ss_pred --C---------CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 431 --D---------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 431 --~---------~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
. .....++.+||+.+..+ ++++++++.+.|+++
T Consensus 287 ~~~~~~~~~~~~~~g~~~~~iRis~~~~~----t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 287 MTHAGVPKEEREAAGLTDNLIRLSVGCEN----VQDIIDDLKQALDLV 330 (331)
T ss_dssp HTSTTSCHHHHHHTTCCTTEEEEECCSSC----HHHHHHHHHHHHHTC
T ss_pred hcccccCHHHHHhcCCCCCeEEEEEecCC----HHHHHHHHHHHHHHh
Confidence 0 00112578999987654 489999999888653
No 170
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.87 E-value=8.4e-21 Score=200.19 Aligned_cols=291 Identities=13% Similarity=0.060 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceE
Q 010008 138 DELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF 215 (520)
Q Consensus 138 d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~ 215 (520)
.++....++++++++|++++ +|.+++|+ .++.+++.++ +++||+|+++++.|.+...... ......|.
T Consensus 107 ~~~~~~~~~~la~~~g~~~~----~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~----~~a~~~G~-- 176 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIA----NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLR----AYLEAVGA-- 176 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEE----CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHH----HHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhCCCcc----ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHH----HHHHHCCC--
Confidence 34445677899999999864 44456665 4445555553 6899999999987754321100 00122454
Q ss_pred EEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEech-hhcccccccccCCC
Q 010008 216 ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMA-HISGLVAASVVADP 292 (520)
Q Consensus 216 ~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~A-h~~gli~~~~~~~p 292 (520)
+++.+++ +++.+|+++ +++ +|++|+++++ |++ ..|+++|.++|+++|+++++|.. +..|.. ..+
T Consensus 177 ~v~~v~~--~~~~~d~~~----i~~-~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~-----~~~ 243 (438)
T 1wyu_A 177 KLLTLPL--EGGRTPLPE----VGE-EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL-----KPP 243 (438)
T ss_dssp EEEEECC--BTTBCCCCC----CCT-TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB-----CCH
T ss_pred EEEEEcC--cCCccCHHH----hCC-CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCc-----CCC
Confidence 6666555 356788776 555 7999999888 554 77999999999999999997754 444432 112
Q ss_pred CC-cccEEEeccCc-----ccCCCCceEEEeeCCCcchhhHHHhhcccC--------------C---------CCCCCCC
Q 010008 293 FK-YCDVVTTTTHK-----SLRGPRGGMIFFKKDPVLGVELESAINNAV--------------F---------PGLQGGP 343 (520)
Q Consensus 293 ~~-~aDiv~~S~hK-----~l~GprgG~I~~~~~~~~~~~l~~~i~~~~--------------~---------p~~~g~p 343 (520)
-. ++|++++|.|| |+.||++|++++++ ++.+.+.... + ....+++
T Consensus 244 ~~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~------~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~ 317 (438)
T 1wyu_A 244 GAYGADIAVGDGQSLGLPMGFGGPHFGFLATKK------AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKS 317 (438)
T ss_dssp HHHTCSEEEEECTTTTCCCGGGCSCCEEEEECG------GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSC
T ss_pred ccCCCCEEEECCcccCCCccCCCCCeeEEEEcH------HHHHhCCCceeccccccCCCcceeeeccccccccchhcccC
Confidence 11 58999999777 68899889999987 4444331100 0 0001233
Q ss_pred hH---HHHHHHHHH--HHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHh
Q 010008 344 HN---HTIGGLAVC--LKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILD 417 (520)
Q Consensus 344 ~~---~~iaala~a--l~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~ 417 (520)
+. ..+++++++ +......++++..+++.++++++.+.|.+. |+++..+. ..+.++.++. +.+..++.+.|.
T Consensus 318 ~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~~-~~~~~~~~~~L~ 394 (438)
T 1wyu_A 318 NITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--PFFNEFALAL-PKDPEAVRRALA 394 (438)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS--SBCSEEEEEC-SSCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC--CeEEEEEEeC-CCCHHHHHHHHH
Confidence 22 344454444 544433456788889999999999999986 99987642 2222222321 246778888888
Q ss_pred hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 418 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 418 ~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
+.||.+.. .|+. .+.++++||++...+ +++|++++++.|++++
T Consensus 395 ~~gi~v~~--~~~~--~~~~~~lRis~~~~~----t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 395 ERGFHGAT--PVPR--EYGENLALFAATELH----EEEDLLALREALKEVL 437 (438)
T ss_dssp HTTCCCCE--ECCT--TSCSSEEEEECCTTC----CHHHHHHHHHHHHHHC
T ss_pred HCCceecc--cccc--ccCCCeEEEEecccC----CHHHHHHHHHHHHHHh
Confidence 88998721 0111 112678999987554 4899999999987653
No 171
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.87 E-value=4.4e-21 Score=203.47 Aligned_cols=327 Identities=17% Similarity=0.204 Sum_probs=200.6
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC----C
Q 010008 107 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----P 182 (520)
Q Consensus 107 ~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~----p 182 (520)
+.|.+++...+.... ..|+..+...+++ +++++++|.+. .+.+++|++|+.+++.++++ |
T Consensus 55 ~~v~~a~~~~~~~~~-------~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~ggt~A~~~al~~~~~~~~~~ 118 (467)
T 1ax4_A 55 NAMSDHQWAAMITGD-------EAYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKE 118 (467)
T ss_dssp CCEEHHHHHHHHTCC-------CCSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcc-------cccccCccHHHHH----HHHHHHcCCCc-----EEEcCCcHHHHHHHHHHHHHhhccC
Confidence 667776665554221 1133334455555 67888888742 24445677999999999988 9
Q ss_pred CCE---EEEcCCCCCccccccccccccccccccceEEEEEcccC----C-----CCCCCCHHHHHHHhhhc---CCcEEE
Q 010008 183 HDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD----E-----STGLVDYDMLEKTAILF---RPKLII 247 (520)
Q Consensus 183 GD~---Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d----~-----~~~~iD~d~le~~i~~~---~pklIi 247 (520)
||+ |++..+.++... ..+...|. +++..+.+ . .++.+|+++|++++++. ++++|+
T Consensus 119 Gd~~~~viv~~~~~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi 188 (467)
T 1ax4_A 119 GKAKNPVFISNFHFDTTA--------AHVELNGC--KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIV 188 (467)
T ss_dssp TCCSSCEEEESSCCHHHH--------HHHHHTTC--EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEE
T ss_pred CCccceEEEeccccchhh--------HHHhccCC--ceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEE
Confidence 998 888732211110 12233444 34433221 1 14578999999999853 589999
Q ss_pred EcCCCCCC---CC---CHHHHHHHHHHhCCEEEEechhhc-ccc--------cccccCCCC-----CcccEEEeccCccc
Q 010008 248 AGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHIS-GLV--------AASVVADPF-----KYCDVVTTTTHKSL 307 (520)
Q Consensus 248 ~~~s~~p~---~~---d~~~i~~ia~~~g~~li~D~Ah~~-gli--------~~~~~~~p~-----~~aDiv~~S~hK~l 307 (520)
++.++||+ .. ++++|+++|++||++||+|++|.. |.. ..+.....+ .++|++++|+||++
T Consensus 189 ~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 1ax4_A 189 STVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP 268 (467)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT
T ss_pred EeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccC
Confidence 98777664 33 467999999999999999998765 221 111110001 24789999999998
Q ss_pred CCCCceEEEeeCCCcchhhHHHhhcccC--CCC--CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008 308 RGPRGGMIFFKKDPVLGVELESAINNAV--FPG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE 383 (520)
Q Consensus 308 ~GprgG~I~~~~~~~~~~~l~~~i~~~~--~p~--~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~ 383 (520)
..|-||+++++++. ++.+++.... +.+ ..++.....+++++.+++.... .+..++..++++.+.+.|.+
T Consensus 269 g~~~Gg~~~~~d~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 269 LLNIGGLVAIRDNE----EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp CCSSCEEEEESSCH----HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEeCCHH----HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh
Confidence 65557888887310 1333222110 011 1234444455555556765433 23344555778889999988
Q ss_pred CCCEEecCCCCCeeEEEE-------ecCCCCCHHHHHHHH-hhcCeEEcC-CCC-CCCC------CCCCCCEEEEccCCc
Q 010008 384 LGYKLVSGGSDNHLVLVD-------LRPMGIDGARVEKIL-DMASITLNK-NSV-PGDK------SALVPGGIRIGSPAM 447 (520)
Q Consensus 384 ~G~~v~~~gt~~~~~~vd-------~~~~g~~~~~~~~~L-~~~gI~v~~-~~~-Pg~~------~~~~~~giRig~~~~ 447 (520)
.|++++.+ ...+++|++ +...+++..++.+.| ++.||.+.. +.. .+.. .+...+.|||+++..
T Consensus 342 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~ 420 (467)
T 1ax4_A 342 AGIPIQYP-TGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 420 (467)
T ss_dssp TTCCBCSS-CCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred CCCCcccC-CCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccc
Confidence 88877643 235667777 322234456677777 899999864 211 0110 011237899998743
Q ss_pred cccCCCHHHHHHHHHHHHHHHHH
Q 010008 448 TTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 448 tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+ ++++|++++++.|.++++.
T Consensus 421 ~---~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 421 V---YTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp S---SCHHHHHHHHHHHHTTHHH
T ss_pred c---CCHHHHHHHHHHHHHHHHh
Confidence 2 4689999999999998865
No 172
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.87 E-value=2.7e-21 Score=201.23 Aligned_cols=289 Identities=16% Similarity=0.142 Sum_probs=186.9
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 213 (520)
Q Consensus 134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~ 213 (520)
.+..++++ +++++++|.+ + .+.++||++|+..++.++++|||+|+++++.|++...... ......|.
T Consensus 63 ~~~~~~l~----~~la~~~g~~-~----~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~ 129 (398)
T 2rfv_A 63 NPTTDALE----KKLAVLERGE-A----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLS----HSMPKFGI 129 (398)
T ss_dssp CHHHHHHH----HHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHH----THHHHTTC
T ss_pred ChHHHHHH----HHHHHHhCCC-c----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHHcCC
Confidence 34444444 7888999987 2 4667899999999999999999999999998865432110 00123454
Q ss_pred eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008 214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 291 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~ 291 (520)
+++.++++ |++++++.+++ ++++|+++.++||+ ..|+++|+++|+++|+++++|++|..+... .
T Consensus 130 --~~~~v~~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-----~ 195 (398)
T 2rfv_A 130 --NVRFVDAA------KPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ-----Q 195 (398)
T ss_dssp --EEEEECTT------SHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----C
T ss_pred --EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----C
Confidence 55565442 89999999987 89999999888886 789999999999999999999998766432 2
Q ss_pred CCC-cccEEEeccCcccCCC--C-ceEEEeeCCCcchhhHHH-hhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008 292 PFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 366 (520)
Q Consensus 292 p~~-~aDiv~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~l~~-~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~ 366 (520)
++. ++|+++.|+||++.|| | +|++++++ ++.+ .+.........++.+....++...+++. ....
T Consensus 196 ~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~ 264 (398)
T 2rfv_A 196 PLQLGADIVVHSVTKYINGHGDVIGGIIVGKQ------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIR 264 (398)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHH
T ss_pred chhhCCcEEEEeCcccccCCCCceEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-----HHHH
Confidence 233 5899999999998665 4 39999987 4544 4433221110123333333333334432 3445
Q ss_pred HHHHHHHHHHHHHHHHHCC-CE--------------EecC--CCCCeeEEEEecCCCCCHHHHHHHHhhc---CeEEcCC
Q 010008 367 QNKVVSNCRALASRLVELG-YK--------------LVSG--GSDNHLVLVDLRPMGIDGARVEKILDMA---SITLNKN 426 (520)
Q Consensus 367 ~~~i~~na~~l~~~L~~~G-~~--------------v~~~--gt~~~~~~vd~~~~g~~~~~~~~~L~~~---gI~v~~~ 426 (520)
.++..+|++.+.+.|.+.+ +. +..+ .....++++++.. ......+++++. ||.++.+
T Consensus 265 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~l~~~~~~~~i~~~~G 341 (398)
T 2rfv_A 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG---GLEAGRRMINSVELCLLAVSLG 341 (398)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHTTCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC---CHHHHHHHHHhCCcceeccCCC
Confidence 6677788888999887743 11 1110 0134566777742 123455566554 6666443
Q ss_pred CC------CC---CC--C-------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 427 SV------PG---DK--S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 427 ~~------Pg---~~--~-------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
.. |. +. + ...++.|||+....+ ++++++++.++|+++
T Consensus 342 ~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~----~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 342 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLED----PEDIINDLEHAIRKA 396 (398)
T ss_dssp SSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSC----HHHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHHhh
Confidence 21 00 00 0 012578999987544 478888888887653
No 173
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.87 E-value=7.1e-21 Score=201.10 Aligned_cols=287 Identities=17% Similarity=0.109 Sum_probs=189.6
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 212 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g 212 (520)
+++..+++| +++++++|.+. .|.++||++|+.+++.++++|||+|+++++.|++.+.... ..+...|
T Consensus 112 ~~~~~~~l~----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G 178 (445)
T 1qgn_A 112 GNPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE----TILPKMG 178 (445)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHH----HTGGGGT
T ss_pred CChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcC
Confidence 345555555 67889999862 4667999999999999999999999999988876432100 0122345
Q ss_pred ceEEEEEcccCCCCCCCCHHHHHHHhhhcCC-cEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008 213 IYFESMPYRLDESTGLVDYDMLEKTAILFRP-KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 289 (520)
Q Consensus 213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~p-klIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~ 289 (520)
. +++.++.+ |++++++++++ ++ |+|++.+++||+ ..|+++|+++|+++|++|++|++|..+..
T Consensus 179 ~--~v~~v~~~------d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~----- 244 (445)
T 1qgn_A 179 I--TATVIDPA------DVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN----- 244 (445)
T ss_dssp C--EEEEECSS------CHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----
T ss_pred C--EEEEeCCC------CHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----
Confidence 4 55565432 89999999988 78 999999998886 78999999999999999999999876642
Q ss_pred CCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008 290 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 365 (520)
Q Consensus 290 ~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~ 365 (520)
..++. ++|++++|+||++.|+. +|++++++ ++.+++...... ..+.++....+. +++.+ ..+..
T Consensus 245 ~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~------~l~~~l~~~~~~-~g~~~~~~~a~~---~~~~l--~~l~~ 312 (445)
T 1qgn_A 245 QKALALGADLVLHSATKFLGGHNDVLAGCISGPL------KLVSEIRNLHHI-LGGALNPNAAYL---IIRGM--KTLHL 312 (445)
T ss_dssp CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH------HHHHHHHHHHHH-HCCCCCHHHHHH---HHHHG--GGHHH
T ss_pred CCccccCCEEEEECCcccccccccceEEEEEECH------HHHHHHHHHHHH-hCCCCCHHHHHH---HHHhH--HHHHH
Confidence 23444 68999999999998775 89999987 565555432111 112122211111 12222 22345
Q ss_pred HHHHHHHHHHHHHHHHHHC-CC-EEecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhh---cCeEEcC
Q 010008 366 YQNKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDM---ASITLNK 425 (520)
Q Consensus 366 ~~~~i~~na~~l~~~L~~~-G~-~v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~---~gI~v~~ 425 (520)
..++..++++.+.+.|.+. ++ .+..++- ...++.+.+.. ..+.+.++++. .+|.++.
T Consensus 313 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~---~~~~~~~~l~~l~~~~i~~s~ 389 (445)
T 1qgn_A 313 RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG---DLLTTAKFVDALKIPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS---CHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC---CHHHHHHHHHhCCCceEeccC
Confidence 5677788899999999874 55 4443321 23455666642 22334444444 3666554
Q ss_pred CCC------CCC------------CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 426 NSV------PGD------------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 426 ~~~------Pg~------------~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+.. |.. .....++.||+|+. .+|++.+.+.|++++.
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--------~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--------VEDFDDLKADILQALD 443 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--------SSCHHHHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence 321 100 00122478999864 4689999988888775
No 174
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.87 E-value=1.1e-21 Score=204.80 Aligned_cols=327 Identities=15% Similarity=0.194 Sum_probs=201.2
Q ss_pred ccceEecCC----C---CChHHHHHHHhh-hhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceee
Q 010008 94 KSLELIASE----N---FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNV 163 (520)
Q Consensus 94 ~~i~Liase----n---~~~~~V~ea~~s-~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V 163 (520)
+.|+|..+. + ++++.|.+++.. .+......+|.. .....++++...+++...+| ++++++ +.+
T Consensus 30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~~i-~~~ 102 (412)
T 1yaa_A 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG------ITGLPSLTSNAAKIIFGTQSDALQEDRV-ISV 102 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EEE
T ss_pred CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCC------CCCcHHHHHHHHHHHhcCCCCCCCcceE-EEE
Confidence 467777654 2 567999999988 765322223422 11123455444444433334 234422 111
Q ss_pred ecCChHHHHHHH--HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHhhh
Q 010008 164 QPLSGSPANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAIL 240 (520)
Q Consensus 164 ~~~sGs~A~~~~--l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i~~ 240 (520)
++.+|++|+.++ +..+++|||+|++++|.|.++.. .+...|. +++.+++ +++++.+|++++++.+++
T Consensus 103 ~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~ 172 (412)
T 1yaa_A 103 QSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA--------IFENQGL--KTATYPYWANETKSLDLNGFLNAIQK 172 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH--------HHHTTTC--CEEEEECEETTTTEECHHHHHHHHHH
T ss_pred eccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHH--------HHHHcCc--eEEEEeeecCCCCccCHHHHHHHHHh
Confidence 234455888877 34556799999999998866431 2233454 5555555 444678999999999976
Q ss_pred cC-Cc-EEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc--cCCCC---C--c----ccEEEec
Q 010008 241 FR-PK-LIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV--VADPF---K--Y----CDVVTTT 302 (520)
Q Consensus 241 ~~-pk-lIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~--~~~p~---~--~----aDiv~~S 302 (520)
.+ ++ +++++.++||+ .. ++++|.++|+++|+++|+|++|. ++...+. ...++ . + .++++.|
T Consensus 173 ~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 251 (412)
T 1yaa_A 173 APEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQS 251 (412)
T ss_dssp SCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCcccchhHHHHHHHhcCCCCcceEEEec
Confidence 32 24 44448888886 44 46688999999999999999963 3333220 00011 1 2 2477899
Q ss_pred cCcccC--CCCceEEE--e-----eCCCcchhh----HHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-----CchhH
Q 010008 303 THKSLR--GPRGGMIF--F-----KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SPEFK 364 (520)
Q Consensus 303 ~hK~l~--GprgG~I~--~-----~~~~~~~~~----l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-----~~~~~ 364 (520)
+||+++ |.|.|+++ + ++ + +.+.+........ ++++....++...+|+... ..+.+
T Consensus 252 ~sK~~~~~GlriG~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 324 (412)
T 1yaa_A 252 FAKNAGMYGERVGCFHLALTKQAQNK------TIKPAVTSQLAKIIRSEV-SNPPAYGAKIVAKLLETPELTEQWHKDMV 324 (412)
T ss_dssp CTTTSCCGGGCEEEEEEECCSCTTHH------HHHHHHHHHHHHHHHTTT-SSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCCCcCCcceEEEEEecCCCCCH------HHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999873 67779998 6 33 4 5555544222222 2333334444444554321 12346
Q ss_pred HHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEE
Q 010008 365 VYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGI 440 (520)
Q Consensus 365 ~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~gi 440 (520)
+..+++.++++.+.+.|.+.| +++..+. .+.+.|++ ++...+.+.|+++||.+. | ++
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~l~~~gi~v~----~---------~~ 385 (412)
T 1yaa_A 325 TMSSRITKMRHALRDHLVKLGTPGNWDHIVNQ-CGMFSFTG-----LTPQMVKRLEETHAVYLV----A---------SG 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHC-CSSEEECC-----CCHHHHHHHHHHHCEECC----T---------TS
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCeeeeccC-ceEEEeeC-----CCHHHHHHHHHhCCEEec----c---------Cc
Confidence 677888889999999998855 6665432 23344433 345677778888999983 1 47
Q ss_pred EEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 441 RIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 441 Rig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
||++.. .+++|++++.+.|+++++
T Consensus 386 Ris~~~-----~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 386 RASIAG-----LNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp EEEGGG-----CCTTTHHHHHHHHHHHHH
T ss_pred EEEEcc-----CCHhHHHHHHHHHHHHHH
Confidence 998753 347999999999988765
No 175
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.87 E-value=5.4e-21 Score=199.76 Aligned_cols=288 Identities=18% Similarity=0.124 Sum_probs=187.2
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 213 (520)
Q Consensus 134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~ 213 (520)
++..+++| +++++++|.+. .|.++||++|+.+++. +++|||+|+++++.|++++.... ......|.
T Consensus 66 ~p~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~G~ 131 (403)
T 3cog_A 66 NPTRNCLE----KAVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFR----QVASEFGL 131 (403)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH----HTGGGGTC
T ss_pred CchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHH----HHHHHcCC
Confidence 34456666 67888999862 5667999999999998 99999999999998876432110 01123454
Q ss_pred eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhC-CEEEEechhhcccccccccC
Q 010008 214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVA 290 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g-~~li~D~Ah~~gli~~~~~~ 290 (520)
+++.++++ |++++++++++ ++++|+++.++||+ ..|+++|+++|+++| +++++|++|..+.. .
T Consensus 132 --~v~~v~~~------d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~-----~ 197 (403)
T 3cog_A 132 --KISFVDCS------KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF-----Q 197 (403)
T ss_dssp --EEEEECTT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTT-----C
T ss_pred --EEEEECCC------CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccccc-----C
Confidence 56665543 89999999987 89999999998886 789999999999999 99999999876532 1
Q ss_pred CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008 291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 366 (520)
Q Consensus 291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~ 366 (520)
.|+. ++|+++.|+||++.||. +|+++++++ ++.+++.....+. .++++....++...+++ .....
T Consensus 198 ~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~-----~l~~~l~~~~~~~-g~~~~~~~~~~~~~~l~-----~l~~r 266 (403)
T 3cog_A 198 RPLALGADISMYSATKYMNGHSDVVMGLVSVNCE-----SLHNRLRFLQNSL-GAVPSPIDCYLCNRGLK-----TLHVR 266 (403)
T ss_dssp CTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCH-----HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHT-----THHHH
T ss_pred CccccCCeEEEEcChhhccCCCCCeEEEEEECcH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhhhh-----HHHHH
Confidence 3343 68999999999998775 599999653 5666554432211 11222222222122232 23445
Q ss_pred HHHHHHHHHHHHHHHHHCC---------------CEEecCC--CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcC---C
Q 010008 367 QNKVVSNCRALASRLVELG---------------YKLVSGG--SDNHLVLVDLRPMGIDGARVEKILDMASITLNK---N 426 (520)
Q Consensus 367 ~~~i~~na~~l~~~L~~~G---------------~~v~~~g--t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~---~ 426 (520)
.++..+|+..+.+.|++.. +.+..+. ....++.+.+.. ..+.+.++|++.||.+.. +
T Consensus 267 ~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s~G 343 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG---TLQHAEIFLKNLKLFTLAESLG 343 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS---CHHHHHHHHHHCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC---CHHHHHHHHHhCCcceEccCCC
Confidence 6777788888888887641 1111100 013455566642 236678888888986532 1
Q ss_pred C------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 427 S------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 427 ~------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
. .|+... ...++.|||++...+ ++++++.+.++|+++
T Consensus 344 ~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~----~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 344 GFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLED----EEDLLEDLDQALKAA 398 (403)
T ss_dssp SSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCC----HHHHHHHHHHHHHHh
Confidence 1 232110 112578999987533 366666666666543
No 176
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.87 E-value=1e-19 Score=190.42 Aligned_cols=292 Identities=16% Similarity=0.172 Sum_probs=186.4
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 213 (520)
Q Consensus 134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~ 213 (520)
++..++++ +++++++|.+. .+...+|++|+..++.+++++||+|+++++.|++.+.... ..+...|.
T Consensus 55 ~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~ 121 (412)
T 2cb1_A 55 DPTAKALE----ERLKALEGALE-----AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFG----QVLSLMGV 121 (412)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHH----HTTTTTTC
T ss_pred ChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcCC
Confidence 34455555 67889999862 3456788899999999999999999999998865432110 01223344
Q ss_pred eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008 214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 291 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~ 291 (520)
+++.+++ |++++++++++ ++++|+++.++||+ ..|+++|+++|+++|+++++|++|..+.. ...
T Consensus 122 --~~~~~~~-------~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~----~~~ 187 (412)
T 2cb1_A 122 --TVRYVDP-------EPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGA----LCR 187 (412)
T ss_dssp --EEEEECS-------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTT----SCC
T ss_pred --EEEEECC-------CHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccc----cCC
Confidence 5556543 38999999987 89999999888875 78999999999999999999999876511 112
Q ss_pred CCC-cccEEEeccCcccCCCCc--eEEEeeCCCcc----------------------hhhHHHhhcccCCCCCCCCChHH
Q 010008 292 PFK-YCDVVTTTTHKSLRGPRG--GMIFFKKDPVL----------------------GVELESAINNAVFPGLQGGPHNH 346 (520)
Q Consensus 292 p~~-~aDiv~~S~hK~l~Gprg--G~I~~~~~~~~----------------------~~~l~~~i~~~~~p~~~g~p~~~ 346 (520)
++. ++|++++|+||++.||.+ |++++.++... ..++.+.++...... .|.....
T Consensus 188 ~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~-~g~~~~~ 266 (412)
T 2cb1_A 188 PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL-CGMALSP 266 (412)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTT-TCCCCCH
T ss_pred ccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHh-cCCCCCh
Confidence 233 689999999999977643 65555442100 002223332221111 1211111
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEe-cCCC---------------CCeeEEEEecCCCCCH
Q 010008 347 TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLV-SGGS---------------DNHLVLVDLRPMGIDG 409 (520)
Q Consensus 347 ~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~-~~gt---------------~~~~~~vd~~~~g~~~ 409 (520)
..++ .++..+ ..+....++..++++.+.+.|.+ .++.++ .++. ...++.+.+ + +.
T Consensus 267 ~~a~--~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~---~-~~ 338 (412)
T 2cb1_A 267 FNAY--LLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL---G-DL 338 (412)
T ss_dssp HHHH--HHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC---S-SH
T ss_pred HHhH--HHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe---C-CH
Confidence 1111 122222 23455667777899999999987 477754 2321 123444554 3 67
Q ss_pred HHHHHHHhhcCeEEcCCC---------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 410 ARVEKILDMASITLNKNS---------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 410 ~~~~~~L~~~gI~v~~~~---------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
+.+.+.|++.||.+ ..+ .|.... ...++.||+++...++ +++++.+.+.|++
T Consensus 339 ~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~----~~~i~~l~~al~~ 411 (412)
T 2cb1_A 339 ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDP----LDLLALFEEALEA 411 (412)
T ss_dssp HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCH----HHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCH----HHHHHHHHHHHhh
Confidence 88899999999998 553 121100 0115789999876654 7888888887753
No 177
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.87 E-value=4.2e-21 Score=201.26 Aligned_cols=289 Identities=13% Similarity=0.055 Sum_probs=185.3
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 212 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g 212 (520)
+++..+++| +++++++|.+. .|..+||++|+.+++.++++|||+|++.++.|++.+.... ..+...|
T Consensus 80 ~~p~~~~le----~~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~l~~~G 146 (415)
T 2fq6_A 80 GTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCS----KILSKLG 146 (415)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHH----HTGGGGT
T ss_pred CCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcC
Confidence 456666666 67889999863 3556899999999999999999999999998876542110 0112235
Q ss_pred ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccc
Q 010008 213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASV 288 (520)
Q Consensus 213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~ 288 (520)
. ++..++.+ |++++++++++ +||+|++..++||+ ..|+++|+++|++ +|+++++|++|..+..
T Consensus 147 ~--~v~~v~~~------d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~---- 213 (415)
T 2fq6_A 147 V--TTSWFDPL------IGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL---- 213 (415)
T ss_dssp C--EEEEECTT------CGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS----
T ss_pred c--EEEEECCC------CHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc----
Confidence 4 55554432 88999999987 89999999888886 7899999999999 9999999999876532
Q ss_pred cCCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchh
Q 010008 289 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEF 363 (520)
Q Consensus 289 ~~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~ 363 (520)
..|+. ++|++++|+||++.|+. +|++++++ ++.+++..... .+. .......+.+..+++ .+
T Consensus 214 -~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~------~~~~~l~~~~~~~G~--~~~~~~a~~~~~~l~-----~l 279 (415)
T 2fq6_A 214 -FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA------RCWEQLRENAYLMGQ--MVDADTAYITSRGLR-----TL 279 (415)
T ss_dssp -SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT------TTHHHHHHHHHHTTC--CCCHHHHHHHHHHHH-----HH
T ss_pred -CCccccCCeEEEEeCccccCCCCCceEEEEEeCH------HHHHHHHHHHHhcCC--CCCHHHHHHHHhhhh-----HH
Confidence 22344 68999999999997754 69999887 34444432111 111 111111111112233 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCE-EecCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhc---CeEE
Q 010008 364 KVYQNKVVSNCRALASRLVEL-GYK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMA---SITL 423 (520)
Q Consensus 364 ~~~~~~i~~na~~l~~~L~~~-G~~-v~~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~---gI~v 423 (520)
....++..+|++.+++.|.+. ++. +..++ ....++.+.+.. +.+...+.++|+.. +|.+
T Consensus 280 ~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g-~~~~~~~~~~l~~l~~~~~a~ 358 (415)
T 2fq6_A 280 GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK-KLNNEELANYLDNFSLFSMAY 358 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS-CCCHHHHHHHHTTCSSCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-CCCHHHHHHHHHhCCcCeEec
Confidence 455677788999999999874 333 21221 123455666642 11234556666554 4555
Q ss_pred cCCCC--------CCCC--------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 424 NKNSV--------PGDK--------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 424 ~~~~~--------Pg~~--------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
+.+.. |+.. -....+.||+|+...++ +++++.+.+++++
T Consensus 359 s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~----~d~i~~l~~al~~ 413 (415)
T 2fq6_A 359 SWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDV----DDLIADLDAGFAR 413 (415)
T ss_dssp CCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCH----HHHHHHHHHHHHT
T ss_pred cCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCH----HHHHHHHHHHHHh
Confidence 54311 2110 01124689999875443 6777777777653
No 178
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.86 E-value=1.5e-20 Score=203.78 Aligned_cols=340 Identities=15% Similarity=0.121 Sum_probs=205.4
Q ss_pred cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH-H
Q 010008 95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-P 170 (520)
Q Consensus 95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs-~ 170 (520)
.|+|..+++ +.++.+.+++...+.. .+||... ++. ...+.++..++.+.++.. .... .+|.+++|+ +
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~~---~~Y~~~~--g~~---~lr~~ia~~~~~~~~~~~~~~~~~-~~I~~t~G~~e 176 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGILG---CNYPVPP--RML---NISEKIVRQYIIREMGADAIPSES-VNLFAVEGGTA 176 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHT---CSCCSSS--SCC---HHHHHHHHHHHHHHTTCTTSCGGG-EEEEEEEHHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhhc---CCCCCCc--CCH---HHHHHHHHHHHHHhccCCCCCCCc-ceEEEECCHHH
Confidence 455555554 4567777777665531 2454421 111 234455556666666441 1001 267778888 8
Q ss_pred HHHHHHHh-----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcCCc
Q 010008 171 ANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPK 244 (520)
Q Consensus 171 A~~~~l~a-----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~pk 244 (520)
|+..++.+ +++|||+|++++|.|.++.. ...+.+.+.+++++++++++ +.+|+++|++.++. ++|
T Consensus 177 al~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k 247 (546)
T 2zy4_A 177 AMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIE--------IPELAQYALEEVAINADPSLNWQYPDSELDKLKDP-AIK 247 (546)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHH--------HHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST-TEE
T ss_pred HHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHH--------HHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC-CCe
Confidence 99888877 58999999999998765421 11123333467777776443 67999999988765 899
Q ss_pred EEEEcCCCCCC--CCC---HHHHHHHH--HHhCCEEEEechhhcccccccccCCCC---CcccEEEeccCccc--CCCCc
Q 010008 245 LIIAGASAYPR--DFD---YPRMRQIA--DAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRG 312 (520)
Q Consensus 245 lIi~~~s~~p~--~~d---~~~i~~ia--~~~g~~li~D~Ah~~gli~~~~~~~p~---~~aDiv~~S~hK~l--~Gprg 312 (520)
+|++++++||+ ..+ +++|.++| +++|++||+|++|. ++... ..+.+ ...++++.|+||++ +|+|.
T Consensus 248 ~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~-~~~~~--~~s~~~~~~~~~i~~~S~SK~~g~~GlRi 324 (546)
T 2zy4_A 248 IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG-TFADD--FQSLFAICPENTLLVYSFSKYFGATGWRL 324 (546)
T ss_dssp EEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG-GGSTT--CCCHHHHCGGGEEEEEESTTTTTCGGGCE
T ss_pred EEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch-hhccc--CcCHHHhCCCCEEEEEeCccccCCCCcce
Confidence 99998999997 555 66678888 77899999999964 33321 11111 13568899999987 68899
Q ss_pred eEEEeeCCCcchhhHHHhhcccC-----------------------------------CCCC-CCCChHHHHHHHHHHH-
Q 010008 313 GMIFFKKDPVLGVELESAINNAV-----------------------------------FPGL-QGGPHNHTIGGLAVCL- 355 (520)
Q Consensus 313 G~I~~~~~~~~~~~l~~~i~~~~-----------------------------------~p~~-~g~p~~~~iaala~al- 355 (520)
||++++++ ++.+++.... .... .+.+...+.+....++
T Consensus 325 G~~~~~~~-----~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~ 399 (546)
T 2zy4_A 325 GVVAAHQQ-----NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLF 399 (546)
T ss_dssp EEEEEESS-----CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCH-----HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHH
Confidence 99999884 2433331100 0011 1222332332111011
Q ss_pred HHhc-Cchh-HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC---------------CCC-HHHHHHHHh
Q 010008 356 KHAQ-SPEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM---------------GID-GARVEKILD 417 (520)
Q Consensus 356 ~~~~-~~~~-~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~---------------g~~-~~~~~~~L~ 417 (520)
..+. ...+ ++..+.+.++++.+.+.|. .++.+.. ...+.++|+++... +.+ .+.+.+.|+
T Consensus 400 all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~ 477 (546)
T 2zy4_A 400 ALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDE-NAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD 477 (546)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCT-TBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCC-CCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHH
Confidence 1111 1233 5556666667777777774 4443222 22355667786420 112 245778889
Q ss_pred hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 418 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 418 ~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
+.||.+. ||.......+++||++.. .++++++++++.|++++...
T Consensus 478 ~~gV~v~----pG~~F~~~~~~iRis~~~-----~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 478 ETGIVLL----PGRGFGSNRPSGRASLAN-----LNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp HHSCCCE----ESSCTTCSSCEEEEESSS-----SCHHHHHHHHHHHHHHHHHH
T ss_pred HCCEEEe----CccccCCCCCeEEEEecc-----CCHHHHHHHHHHHHHHHHHH
Confidence 9999994 554311135689999753 34799999999999987654
No 179
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.86 E-value=1.1e-20 Score=197.99 Aligned_cols=354 Identities=15% Similarity=0.173 Sum_probs=210.4
Q ss_pred hccccChH-HHHHHHHHHHHhhccceEecC----C---CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 010008 73 SLGEADPE-VCEIITKEKERQFKSLELIAS----E---NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 144 (520)
Q Consensus 73 ~l~~~d~~-~~~~~~~e~~~~~~~i~Lias----e---n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a 144 (520)
.+...+|+ ++.+.++-++.....|||..+ + .++.+.|++|....+.+..+.+|++ ..|. .++.+.+
T Consensus 23 ~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p---~~G~---p~lr~ai 96 (420)
T 4h51_A 23 KIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLP---ISGY---QPFIDEA 96 (420)
T ss_dssp TCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCC---TTCC---HHHHHHH
T ss_pred CCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCC---cCCh---HHHHHHH
Confidence 35555555 566554433322346888765 2 2567999999887776666556654 2333 3454444
Q ss_pred HHHHHHHcCCCCC-CCceeeecCChHHHHHHHHH----hhCCCCCEEEEcCCCCCccccccccccccccccccce-EEEE
Q 010008 145 QKRALAAFNLDEN-KWGVNVQPLSGSPANFEVYT----AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESM 218 (520)
Q Consensus 145 ~~~~~~lfg~~~~-~~~~~V~~~sGs~A~~~~l~----all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v 218 (520)
.++ +||-+.. .-...++..+|+.|+..++. ++++|||+|++++|.++.|.. .+...|.. +...
T Consensus 97 a~~---~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~--------i~~~aG~~~V~~~ 165 (420)
T 4h51_A 97 VKI---IYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYG--------VVKAAGWKNICTY 165 (420)
T ss_dssp HHH---HHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHH--------HHHHTTCCCEEEE
T ss_pred HHH---hcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHH--------HHHHcCCeEEEee
Confidence 333 3554321 11134566677766654443 456899999999998876632 23344542 2222
Q ss_pred EcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008 219 PYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 291 (520)
Q Consensus 219 ~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~ 291 (520)
++ .+++++.+|.+.+.+.+... ++++++.+.++||+ .. ++++|.++|+++++++++|++ |.++.+.+....
T Consensus 166 ~~-~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~-Y~~~~~~~~~~~ 243 (420)
T 4h51_A 166 AY-YDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSA-YQGYASGSLDTD 243 (420)
T ss_dssp EC-EEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES-CTTTTTSCHHHH
T ss_pred cc-ccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehh-hhhhccCCcccc
Confidence 22 23456788999988877542 45677778899997 33 578999999999999999999 667766543221
Q ss_pred CC------C-c-ccEEEeccCccc--CCCCceEEEeeCCCc-chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHH----
Q 010008 292 PF------K-Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPV-LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK---- 356 (520)
Q Consensus 292 p~------~-~-aDiv~~S~hK~l--~GprgG~I~~~~~~~-~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~---- 356 (520)
++ . + .-+++.|++|++ +|+|.|++++..+.. ....+...+......... .|..+.....+..+.
T Consensus 244 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s-~~p~~~a~~~~~~l~d~~l 322 (420)
T 4h51_A 244 AYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYT-CPPAHGARLAHLILSNNEL 322 (420)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTS-SCCHHHHHHHHHHHHSHHH
T ss_pred hHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccC-cchHHHHHHHHHHhcCHHH
Confidence 11 0 1 127789999975 899999998876421 001112222222122222 333333222222222
Q ss_pred -HhcCchhHHHHHHHHHHHHHHHHHHHHCCCE----EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCC
Q 010008 357 -HAQSPEFKVYQNKVVSNCRALASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD 431 (520)
Q Consensus 357 -~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~----v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~ 431 (520)
.....+.+.+.+++.++++.|.+.|.+.|.. .+... ...+.+ .+++.+.+ ++|+++||.+ +|+
T Consensus 323 ~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q-~GmF~~-----~gls~e~v-~~L~e~~Vy~----~~~- 390 (420)
T 4h51_A 323 RKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQ-IGMFSF-----LGLSKAQC-EYCQNHNIFI----TVS- 390 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHC-CSSEEE-----CCCCHHHH-HHHHHTTEEC----CTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCC-CceEEe-----cCcCHHHH-HHHHhCCEEE----cCC-
Confidence 1111234667788889999999999887632 12211 123333 24566665 5788999987 332
Q ss_pred CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 432 ~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
| ||+... ++++.+++++++|+++++..
T Consensus 391 -------g-Ris~Ag-----l~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 391 -------G-RANMAG-----LTHETALMLAQTINDAVRNV 417 (420)
T ss_dssp -------C-EEEGGG-----CCHHHHHHHHHHHHHHHC--
T ss_pred -------C-EEEecc-----CCHHHHHHHHHHHHHHHHHh
Confidence 2 998754 55799999999999998753
No 180
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.86 E-value=6.3e-21 Score=197.56 Aligned_cols=327 Identities=15% Similarity=0.136 Sum_probs=197.7
Q ss_pred ccceEecCC---C----CChHHHHHHHhh-hhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceee
Q 010008 94 KSLELIASE---N----FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV 163 (520)
Q Consensus 94 ~~i~Liase---n----~~~~~V~ea~~s-~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V 163 (520)
+.|+|..+. + ++++.|++++.. .+.+....+|+. ..|. .++++...+++....+. +++. ++|
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~---~~g~---~~lr~~la~~~~~~~~~~~~~~~--~~i 98 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLP---MEGL---NCYRHAIAPLLFGADHPVLKQQR--VAT 98 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCC---TTCC---HHHHHHHHHHHHCTTCHHHHTTC--EEE
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCC---CCch---HHHHHHHHHHHhcCCcccccccc--eEE
Confidence 568887772 2 234899999998 776433344543 1122 24443333333322221 3331 134
Q ss_pred ecCChH-HHHHHH--HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-CCCCCCCHHHHHHHhh
Q 010008 164 QPLSGS-PANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAI 239 (520)
Q Consensus 164 ~~~sGs-~A~~~~--l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~~~~~iD~d~le~~i~ 239 (520)
.+++|+ +|+..+ +.++++|||+|++.+|.|.++.. .+...|. +++.++++ .+++.+|++++++.++
T Consensus 99 ~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~ 168 (397)
T 3fsl_A 99 IQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA--------IFAGAGF--EVSTYPWYDEATNGVRFNDLLATLK 168 (397)
T ss_dssp EEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHH--------HHHHTTC--CEEEECCEETTTTEECHHHHHHHHT
T ss_pred EEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHH--------HHHHcCC--ceEEEeeeeccCCcCcHHHHHHHHH
Confidence 556666 899888 45678999999999998765421 2334455 55555552 2468899999999998
Q ss_pred hc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccc-ccCCCC------CcccEEEeccCc
Q 010008 240 LF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPF------KYCDVVTTTTHK 305 (520)
Q Consensus 240 ~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~-~~~~p~------~~aDiv~~S~hK 305 (520)
.. ++++++++.++||+ .. ++++|+++|+++|+++|+|++|. ++...+ ....++ ....+++.|+||
T Consensus 169 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 169 TLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ-GFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp TCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred hCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCch-hhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 42 56788888888887 43 46689999999999999999964 433321 000011 123488899999
Q ss_pred cc--CCCCceEEEeeCCCcchhhHHHhh----cccCCCCCCCCChHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHH
Q 010008 306 SL--RGPRGGMIFFKKDPVLGVELESAI----NNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNC 374 (520)
Q Consensus 306 ~l--~GprgG~I~~~~~~~~~~~l~~~i----~~~~~p~~~g~p~~~~iaala~al~~~-----~~~~~~~~~~~i~~na 374 (520)
++ +|+|.|+++..... .++.+++ .........+.+.. ..++++.++... ...+.++..+++.+++
T Consensus 248 ~~~~~G~riG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCED---AEAAGRVLGQLKATVRRNYSSPPNF-GAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp TTTCGGGCCEEEEEECSS---HHHHHHHHHHHHHHHHTTTSSCCSH-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCC---HHHHHHHHHHHHHHHHhccCCCCHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 58888999863210 0333222 11111122222222 222222223210 0123466778888899
Q ss_pred HHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008 375 RALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 450 (520)
Q Consensus 375 ~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~ 450 (520)
+.+.+.|.+. |+.+..+. .+.+.|+++ +.+.+.+.|+++||.+. || + ||+...+
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~l~~~gi~v~----~g--------~-Ris~~~~--- 381 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLNQ-RGMFSYTGL-----SAAQVDRLREEFGVYLI----AS--------G-RMCVAGL--- 381 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHHC-CSSEEECCC-----CHHHHHHHHHTTCEECC----TT--------C-EEEGGGC---
T ss_pred HHHHHHHHhcCCCCCceeecCC-ceEEEecCC-----CHHHHHHHHHhCCEEEC----CC--------C-eEEEEec---
Confidence 9999999874 66655432 234445443 46778889999999993 33 1 8876533
Q ss_pred CCCHHHHHHHHHHHHHH
Q 010008 451 GFSEKEFVAIADFIHEG 467 (520)
Q Consensus 451 g~~~~d~~~la~~i~~~ 467 (520)
++++++++++.|+++
T Consensus 382 --~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 382 --NTANVQRVAKAFAAV 396 (397)
T ss_dssp --CTTTHHHHHHHHHHH
T ss_pred --CHhhHHHHHHHHHhh
Confidence 357899999988765
No 181
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.86 E-value=3.1e-20 Score=196.57 Aligned_cols=351 Identities=17% Similarity=0.180 Sum_probs=207.6
Q ss_pred hhccccChH-HHHHHHHHHHHhh-ccceEecCCC-------CChHHHHHHHhhhh--hccCCCCCCCCCCCCcchhHHHH
Q 010008 72 YSLGEADPE-VCEIITKEKERQF-KSLELIASEN-------FTSRAVMEAVGSCL--TNKYSEGLPGKRYYGGNEYIDEL 140 (520)
Q Consensus 72 ~~l~~~d~~-~~~~~~~e~~~~~-~~i~Liasen-------~~~~~V~ea~~s~l--~~~y~~G~p~~ryy~g~~~~d~l 140 (520)
..+...++. ++.+...-..... ..|+|..+.. ++.++|.+++.... ......+|+. ..| ..++
T Consensus 26 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~---~~G---~~~l 99 (448)
T 3meb_A 26 SGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPP---VAG---FPLF 99 (448)
T ss_dssp TTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCC---TTC---CHHH
T ss_pred hcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCC---Ccc---hHHH
Confidence 335555554 5555543333222 3478765432 35678888866544 1122334432 122 2334
Q ss_pred HHHHHHHHHHH-cCCC-----CCCCceeeecCChHHHHHH--HHHhhCCCCCEEEEcCCCCCccccccccccccccc---
Q 010008 141 ETLCQKRALAA-FNLD-----ENKWGVNVQPLSGSPANFE--VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS--- 209 (520)
Q Consensus 141 E~~a~~~~~~l-fg~~-----~~~~~~~V~~~sGs~A~~~--~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~--- 209 (520)
. +.++++ +|.+ ++++ +.+|+.+|++|+.. .+.++++|||+|++++|.|.+|.. .+.
T Consensus 100 r----~~ia~~l~g~~~~~~~~~~i-~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~~ 166 (448)
T 3meb_A 100 L----EAAQFLMFGKDSKAAQEGRI-ASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYG--------IYDKVF 166 (448)
T ss_dssp H----HHHHHHHHCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHH--------HHHHHH
T ss_pred H----HHHHHHhcCCCccccCcCcE-EEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHH--------HHHhhH
Confidence 3 334444 4877 4433 22335556689876 567788999999999998876532 223
Q ss_pred -cccceEEEEEccc-CCC-CCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechh
Q 010008 210 -GTSIYFESMPYRL-DES-TGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAH 279 (520)
Q Consensus 210 -~~g~~~~~v~~~~-d~~-~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah 279 (520)
..|. +++.+++ +++ ++.+|++++++.+++. ++++++++.++||+ ..+ +++|.++|+++|+++++|++|
T Consensus 167 ~~~G~--~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay 244 (448)
T 3meb_A 167 NKLKV--PYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY 244 (448)
T ss_dssp CTTTS--CCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HhCCC--eEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence 4454 5666666 544 5899999999999852 46777888899987 444 666999999999999999994
Q ss_pred hccccccccc--CCCC-----Cccc-EEEeccCccc--CCCCceEE--Ee--------eCCCcchhhHHHhhcccCCCCC
Q 010008 280 ISGLVAASVV--ADPF-----KYCD-VVTTTTHKSL--RGPRGGMI--FF--------KKDPVLGVELESAINNAVFPGL 339 (520)
Q Consensus 280 ~~gli~~~~~--~~p~-----~~aD-iv~~S~hK~l--~GprgG~I--~~--------~~~~~~~~~l~~~i~~~~~p~~ 339 (520)
.++...+.. ..++ .+.+ +++.|+||++ .|+|.|++ ++ .++. ...++.+.+........
T Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~ 322 (448)
T 3meb_A 245 -QGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKA-LSAAMVSGMTLQIRKTW 322 (448)
T ss_dssp -TTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred -ccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHH-HHHHHHHHHHHHHhccc
Confidence 444433210 0011 1223 7789999987 58888998 65 3210 00013333332222222
Q ss_pred CCCChHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHHHHHHCCCE---------EecCCCCCeeEEEEecCC
Q 010008 340 QGGPHNHTIGGLAVCLKHAQ-----SPEFKVYQNKVVSNCRALASRLVELGYK---------LVSGGSDNHLVLVDLRPM 405 (520)
Q Consensus 340 ~g~p~~~~iaala~al~~~~-----~~~~~~~~~~i~~na~~l~~~L~~~G~~---------v~~~gt~~~~~~vd~~~~ 405 (520)
.+. +.....+.+.+|.... ..+.++..+++.++++.+.+.|.+.|++ +..+. ...+.|+++
T Consensus 323 ~~~-~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~--- 397 (448)
T 3meb_A 323 SMS-AIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTA-IGMFTFTGL--- 397 (448)
T ss_dssp SSC-CHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHC-CSSEEECCC---
T ss_pred CCc-cHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCC-ceEEEecCC---
Confidence 233 3333333333332110 0124666788888999999999886432 22221 233444333
Q ss_pred CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 406 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 406 g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+.+.+..+|+++||.+ .||. .||+... +++++++++++.|.++++
T Consensus 398 --~~~~~~~ll~~~gV~v----~~G~--------gRis~a~-----~~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 398 --TPEHVDYLKEKWSIYL----VKAG--------GRMSMCG-----LTESNCDYVAEAIHDAVT 442 (448)
T ss_dssp --CHHHHHHHHHHHCEEE----CSGG--------GEEEGGG-----CCTTTHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHhCCEEE----eCCC--------cEEEEec-----CCHHHHHHHHHHHHHHHH
Confidence 4567777788999999 3432 2998753 345789999999999886
No 182
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.86 E-value=2.4e-20 Score=194.01 Aligned_cols=255 Identities=20% Similarity=0.193 Sum_probs=168.1
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 212 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g 212 (520)
+++..++++ +++++++|.+. .+.++||++|+.+++.+++++||+|++.++.|++.+.... ......|
T Consensus 64 ~~~~~~~l~----~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~g 130 (392)
T 3qhx_A 64 GNPTRTALE----AALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLID----KVFTGWN 130 (392)
T ss_dssp CCHHHHHHH----HHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HTGGGGT
T ss_pred CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH----HHHHhcC
Confidence 345555555 78889999873 3566899999999999999999999999998876432110 0112234
Q ss_pred ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008 213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 290 (520)
Q Consensus 213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~ 290 (520)
. +++.++++ |++++++++++ ++++|++..++||+ ..|+++|+++|+++|+++|+|++|..+.. .
T Consensus 131 ~--~~~~v~~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-----~ 196 (392)
T 3qhx_A 131 V--EYTPVALA------DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-----Q 196 (392)
T ss_dssp C--EEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----C
T ss_pred c--EEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 3 56665542 89999999987 89999999888886 78999999999999999999999865422 2
Q ss_pred CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008 291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV 365 (520)
Q Consensus 291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~ 365 (520)
.++. ++|+++.|+||++.|+ ++|+++++++ ++.+.+..... .+...+ .....+ ++..+. .+..
T Consensus 197 ~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~-----~~~~~l~~~~~~~g~~~~-~~~~~~----~~~~l~--~l~~ 264 (392)
T 3qhx_A 197 QPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDE-----ELDQSFAFLQNGAGAVPG-PFDAYL----TMRGLK--TLVL 264 (392)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHHHCCCCC-HHHHHH----HHHHHT--THHH
T ss_pred ChHHhCCcEEEEcCccccCCCCCceEEEEEECcH-----HHHHHHHHHHHhcCCCCC-HHHHHH----HHhhhh--HHHH
Confidence 2333 6899999999999664 5899999863 55555543211 111222 111111 222221 2455
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCEEe-cCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCC
Q 010008 366 YQNKVVSNCRALASRLVEL-GYKLV-SGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASITLNKN 426 (520)
Q Consensus 366 ~~~~i~~na~~l~~~L~~~-G~~v~-~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~ 426 (520)
..++..++++.+.+.|.+. ++..+ .++- ...++.+.+......++.+.+.|+..+|.++.+
T Consensus 265 ~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G 342 (392)
T 3qhx_A 265 RMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLG 342 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCC
Confidence 6778888999999999873 44322 2221 123556666431122344555566667776544
No 183
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.86 E-value=6.6e-21 Score=198.73 Aligned_cols=344 Identities=16% Similarity=0.149 Sum_probs=200.0
Q ss_pred hhccccChH-HHHHHHHHHHHhh-ccceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008 72 YSLGEADPE-VCEIITKEKERQF-KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 146 (520)
Q Consensus 72 ~~l~~~d~~-~~~~~~~e~~~~~-~~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~ 146 (520)
+++....|+ ++.+......... +.|+|..++. ..++.+.+++..... ....+|.. .....++++
T Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~-~~~~~y~~------~~g~~~lr~---- 86 (409)
T 4eu1_A 18 GPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATL-GTNMDYAP------VTGIASFVE---- 86 (409)
T ss_dssp ---------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCC-CSCCCCCC------TTCCHHHHH----
T ss_pred hcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCc-cccccCCC------CCCcHHHHH----
Confidence 446666666 6766655444333 5688876652 345667777765521 11223322 111234443
Q ss_pred HHHHH-cCCC-----CCCCceeeecCChHHHHHHH---HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEE
Q 010008 147 RALAA-FNLD-----ENKWGVNVQPLSGSPANFEV---YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 217 (520)
Q Consensus 147 ~~~~l-fg~~-----~~~~~~~V~~~sGs~A~~~~---l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~ 217 (520)
.++++ +|.+ ++++ ..+++.+|++|+.++ +.+++++||+|++++|.|.++.. .+...|. ++
T Consensus 87 ~ia~~~~~~~~~~~~~~~i-~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~ 155 (409)
T 4eu1_A 87 EAQKLCFGPTCAALRDGRI-ASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES--------IFAKAGM--EL 155 (409)
T ss_dssp HHHHHHHCSSCHHHHTTCE-EEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH--------HHHHTTC--EE
T ss_pred HHHHHHcCCCchhhccCce-eeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCC--eE
Confidence 33333 4665 3322 112345555777654 45668999999999998866531 2334565 66
Q ss_pred EEcccC-CCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008 218 MPYRLD-ESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV 289 (520)
Q Consensus 218 v~~~~d-~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~ 289 (520)
+.++++ .+++.+|++++++.++.. ++++++++.++||+ .++ +++|.++|+++|+++|+|++|. ++...+..
T Consensus 156 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~~~ 234 (409)
T 4eu1_A 156 TPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ-GFATGQLD 234 (409)
T ss_dssp EEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHH
T ss_pred EEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccCCcc
Confidence 666663 345789999999999742 45666778899987 555 5569999999999999999954 44433210
Q ss_pred --CCC---C-C-c-ccEEEeccCccc--CCCCceEE--EeeCCCcchhh----HHHhhcccCCCCCCCCChHHHHHHHHH
Q 010008 290 --ADP---F-K-Y-CDVVTTTTHKSL--RGPRGGMI--FFKKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAV 353 (520)
Q Consensus 290 --~~p---~-~-~-aDiv~~S~hK~l--~GprgG~I--~~~~~~~~~~~----l~~~i~~~~~p~~~g~p~~~~iaala~ 353 (520)
..+ + . . ..+++.|++|++ +|+|.|++ ++.++ + +.+.+......+..+.+.. ..++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 308 (409)
T 4eu1_A 235 YDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASA-----EEAKRLVSQLALLIRPMYNNPPLY-GAWVVSS 308 (409)
T ss_dssp HHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSH-----HHHHHHHHHHHHHHHHHHSSCCHH-HHHHHHH
T ss_pred cchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCH-----HHHHHHHHHHHHHHhhhcCCCChH-HHHHHHH
Confidence 000 0 1 1 237889999986 68888997 55442 4 4444433221222223233 3333333
Q ss_pred HHHHhc-----CchhHHHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEc
Q 010008 354 CLKHAQ-----SPEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424 (520)
Q Consensus 354 al~~~~-----~~~~~~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~ 424 (520)
+++... ....++..+++.++++.+.+.|.+.| +++..+. .+.+.|++ ++.+.+.++|+++||.+.
T Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~ll~~~gv~v~ 382 (409)
T 4eu1_A 309 ILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQ-VGMMAYTG-----LTREQVELLRSEYHIYMT 382 (409)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHS-CSSEEECC-----CCHHHHHHHHHHHCEECC
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCC-ceEEEEeC-----CCHHHHHHHHHcCCEEEc
Confidence 444210 12246677888899999999999877 5544331 23444433 345667778888999983
Q ss_pred CCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 425 ~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
|+ .||++... +++|++++++.|.+++
T Consensus 383 ----p~---------~Ri~~~~~-----~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 383 ----LN---------GRAAVSGL-----NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ----TT---------CEEEGGGC-----CTTTHHHHHHHHHHHH
T ss_pred ----CC---------CEEEEEec-----CHhhHHHHHHHHHHHh
Confidence 32 37776543 4578999999998765
No 184
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.86 E-value=2e-20 Score=193.92 Aligned_cols=315 Identities=14% Similarity=0.088 Sum_probs=196.8
Q ss_pred CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--C
Q 010008 104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K 181 (520)
Q Consensus 104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~ 181 (520)
+.++.|++++...+... ..+ . +.| ..+...+ .++++++++|+++++ .+..++|++|+.+++.++. .
T Consensus 61 ~~~~~v~~a~~~~~~~~-~~~--~-~~~-~~~~~~~----l~~~la~~~~~~~~~---v~~~~gg~~a~~~al~~~~~~~ 128 (395)
T 1vef_A 61 HGNPEVVEAVKRQAETL-MAM--P-QTL-PTPMRGE----FYRTLTAILPPELNR---VFPVNSGTEANEAALKFARAHT 128 (395)
T ss_dssp BTCHHHHHHHHHHHHHC-CCC--C-TTS-CCHHHHH----HHHHHHHTSCTTEEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-CCC--c-ccc-CCHHHHH----HHHHHHHhcCCCcCE---EEEcCcHHHHHHHHHHHHHHHh
Confidence 47899999999887542 111 1 123 2233333 347888899876542 2334556699999888764 6
Q ss_pred CCCEEEEcCCCCCccccccccccccccccccceEE-EEEcccCCCC---CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--
Q 010008 182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-SMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASAYPR-- 255 (520)
Q Consensus 182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~-~v~~~~d~~~---~~iD~d~le~~i~~~~pklIi~~~s~~p~-- 255 (520)
+||+|+++++.|.+..... +...|.... ....++..+. ...|+++|++++++ ++++|+++.+++++
T Consensus 129 ~~~~vi~~~~~y~~~~~~~-------~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~ 200 (395)
T 1vef_A 129 GRKKFVAAMRGFSGRTMGS-------LSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGV 200 (395)
T ss_dssp SCCEEEEETTCCCCSSHHH-------HHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTS
T ss_pred CCCeEEEEcCCcCCCchhh-------hhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCc
Confidence 8999999988764432111 112222100 0000111000 12589999999986 89999987655543
Q ss_pred CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCcccC-CCCceEEEeeCCCcchhh
Q 010008 256 DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVE 326 (520)
Q Consensus 256 ~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~ 326 (520)
..+ +++|.++|+++|++||+|++|. |+...+.. .++ . ++|++ |+||++. |+|.|++++++ +
T Consensus 201 ~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~~-~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~------~ 270 (395)
T 1vef_A 201 RPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGKR-FAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE------E 270 (395)
T ss_dssp EECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH------H
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCch-hHhhhcCCCCCEE--EEcccccCCCceEEEEehH------H
Confidence 557 9999999999999999999987 54322211 111 1 46877 6699985 46779999988 6
Q ss_pred HHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec-CCCCCeeEEEEecCC
Q 010008 327 LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGSDNHLVLVDLRPM 405 (520)
Q Consensus 327 l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~-~gt~~~~~~vd~~~~ 405 (520)
+.+.+......... +++....++...+++.... .++.+++.++++.+.+.|.+.+.+++. ......++++++..
T Consensus 271 ~~~~l~~~~~~~~~-~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~- 345 (395)
T 1vef_A 271 VARSMPKGGHGTTF-GGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKE- 345 (395)
T ss_dssp HHHTSCTTSSCCSS-TTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESS-
T ss_pred HHhhhccCCcCCCc-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcC-
Confidence 76666542222222 2344444444456665432 345677888899999999876542211 00123566777753
Q ss_pred CCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 406 GIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 406 g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
+...+.+.|. +.||.+.. + .++++||+++.. .+++|++++++.|++++
T Consensus 346 --~~~~l~~~l~~~~gi~v~~----~-----~~~~iRi~~~~~----~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 346 --KAAPYIARLEKEHRVLALQ----A-----GPTVIRFLPPLV----IEKEDLERVVEAVRAVL 394 (395)
T ss_dssp --CSHHHHHHHHHHHCEECEE----S-----STTEEEECCCTT----CCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHCCeEEec----C-----CCCEEEEeCCCC----CCHHHHHHHHHHHHHHh
Confidence 2466777777 89999853 2 257899987643 45899999999998765
No 185
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2.2e-20 Score=195.75 Aligned_cols=289 Identities=18% Similarity=0.183 Sum_probs=185.5
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 212 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g 212 (520)
+++..+++| +++++++|.+. .+.++||++|+.+++.++++|||+|+++++.|++...... ......|
T Consensus 79 ~~p~~~~l~----~~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~g 145 (414)
T 3ndn_A 79 GNPTVSVFE----ERLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS----EILPRWG 145 (414)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHH----HHHHHcC
Confidence 345566666 67889999753 3566899999999999999999999999998876432110 0011244
Q ss_pred ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008 213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 290 (520)
Q Consensus 213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~ 290 (520)
. +++.++.+ |++++++++++ ++|+|++..++||+ ..|+++|+++|+++|++||+|++|..+.. .
T Consensus 146 ~--~~~~v~~~------d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~-----~ 211 (414)
T 3ndn_A 146 V--QTVFVDGD------DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLL-----Q 211 (414)
T ss_dssp C--EEEEECTT------CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHH-----C
T ss_pred c--EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 4 56665542 89999999987 89999999998887 78999999999999999999999876643 2
Q ss_pred CCCC-cccEEEeccCcccCC---CCceEEEeeCCCcchhhHHH-hhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008 291 DPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 365 (520)
Q Consensus 291 ~p~~-~aDiv~~S~hK~l~G---prgG~I~~~~~~~~~~~l~~-~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~ 365 (520)
.++. ++|+++.|+||++.| +++|++++++ +... .+..... . .|+... ..++ +.+++.+ ..+..
T Consensus 212 ~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~------~~~~~~l~~~~~-~-~g~~~~-~~~a-~~~~~~l--~~l~~ 279 (414)
T 3ndn_A 212 QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDR------EYIDGPVQKLMR-H-TGPAMS-AFNA-WVLLKGL--ETLAI 279 (414)
T ss_dssp CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHTTHHHHHHH-H-HCCCCC-HHHH-HHHHHHG--GGHHH
T ss_pred CchhcCCCeEeccCCccccCCCCceEEEEEECH------HHHHHHHHHHHH-H-cCCCCC-HHHH-HHHHHHH--HHHHH
Confidence 3444 689999999999965 5689999987 3332 3331110 0 111111 1111 1223322 24566
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCEEe-cCCC---------------CCeeEEEEecCC----CCCHHHHHHHHhhcCeEEc
Q 010008 366 YQNKVVSNCRALASRLVEL-GYKLV-SGGS---------------DNHLVLVDLRPM----GIDGARVEKILDMASITLN 424 (520)
Q Consensus 366 ~~~~i~~na~~l~~~L~~~-G~~v~-~~gt---------------~~~~~~vd~~~~----g~~~~~~~~~L~~~gI~v~ 424 (520)
..++..+|++.+.+.|.+. ++..+ .++- ...++++.+... ......+.+.|+..+|.++
T Consensus 280 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s 359 (414)
T 3ndn_A 280 RVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNN 359 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCC
Confidence 7788899999999999873 44322 2221 134566777421 1112334455555666665
Q ss_pred CCCC------CCCC------------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 425 KNSV------PGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 425 ~~~~------Pg~~------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
.+.. |... ....++.||++.. .++.+.+.+.|.+++
T Consensus 360 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG--------~e~~~dli~dl~~al 413 (414)
T 3ndn_A 360 LGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG--------LEDTDDLIADIDRAL 413 (414)
T ss_dssp CSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC--------SSCHHHHHHHHHHHH
T ss_pred CCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC--------cCCHHHHHHHHHHhh
Confidence 4321 1100 0123567999864 366777777776654
No 186
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.85 E-value=4.9e-21 Score=199.68 Aligned_cols=323 Identities=16% Similarity=0.122 Sum_probs=198.4
Q ss_pred ccceEecCC--C-----CChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CC-----CCCCC
Q 010008 94 KSLELIASE--N-----FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NL-----DENKW 159 (520)
Q Consensus 94 ~~i~Liase--n-----~~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~-----~~~~~ 159 (520)
+.|+|..++ + ++++.|.+++...+.+. ...+|.. .....+++ +.+++++ +. +++++
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr----~~la~~~~~~~~~~~~~~~v 100 (412)
T 1ajs_A 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP------ILGLAEFR----TCASRLALGDDSPALQEKRV 100 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHH----HHHHHHHHCTTCHHHHTTCE
T ss_pred CceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCC------CCCCHHHH----HHHHHHHhcCCCCccCCCcE
Confidence 567887665 1 45689999998776221 1223321 11123444 3444444 32 44422
Q ss_pred ceeeecCChHHHHHHHH--HhhCCCC-----CEEEEcCCCCCccccccccccccccccccceEE-EEEcccCC-CCCCCC
Q 010008 160 GVNVQPLSGSPANFEVY--TAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-SMPYRLDE-STGLVD 230 (520)
Q Consensus 160 ~~~V~~~sGs~A~~~~l--~all~pG-----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~-~v~~~~d~-~~~~iD 230 (520)
+.|++.+|++|+.+++ .++++|| |+|++++|.|.++.. .+...|. + ++.+++++ +++.+|
T Consensus 101 -~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d 169 (412)
T 1ajs_A 101 -GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTTAGF--KDIRSYRYWDTEKRGLD 169 (412)
T ss_dssp -EEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHHTTC--SCEEEEECEETTTTEEC
T ss_pred -EEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH--------HHHHcCC--ceeEEEeeecCCCCccC
Confidence 1112344559999885 3557899 999999998865421 2233454 4 44555532 457899
Q ss_pred HHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccc---cc-C-CCCC-ccc
Q 010008 231 YDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS---VV-A-DPFK-YCD 297 (520)
Q Consensus 231 ~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~---~~-~-~p~~-~aD 297 (520)
++++++.+++. ++++|+++.++||+ .. ++++|+++|+++|++||+|++|. ++...+ .. + ..+. ..|
T Consensus 170 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 170 LQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ-GFASGNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc-cccCCcccccchHHHHHhccCC
Confidence 99999998764 45677788888886 43 46689999999999999999943 443322 10 0 0011 123
Q ss_pred --EEEeccCccc--CCCCceEEEe---eCCCcchhh----HHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-----Cc
Q 010008 298 --VVTTTTHKSL--RGPRGGMIFF---KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SP 361 (520)
Q Consensus 298 --iv~~S~hK~l--~GprgG~I~~---~~~~~~~~~----l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-----~~ 361 (520)
+++.|+||++ .|.|.|++++ ++ + +.+.+.........+.+.. ..++...+|+... ..
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~l~~~~~~~~~~~ 321 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEP------DSILRVLSQMQKIVRVTWSNPPAQ-GARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSH------HHHHHHHHHHHHHHHTTTSSCCSH-HHHHHHHHHHSHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCH------HHHHHHHHHHHHHHhcccCCCChH-HHHHHHHHHcCcchhHHHHH
Confidence 8889999987 3677799998 54 4 3333333111112222233 3334444554321 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCC
Q 010008 362 EFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVP 437 (520)
Q Consensus 362 ~~~~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~ 437 (520)
..++..+++.++++.+.+.|.+.| +.+..+. .+.+.|+++ +.+.+...|+++||.+. |
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~l~~~gv~v~----~-------- 383 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQ-IGMFSFTGL-----NPKQVEYLINQKHIYLL----P-------- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHC-CSSEEECCC-----CHHHHHHHHHTTCEECC----T--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCC-CceEEEeCC-----CHHHHHHHHHhCCEEec----C--------
Confidence 346677888889999999998865 6654432 234444433 35677788889999983 2
Q ss_pred CEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 438 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 438 ~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
++||++.. .+++|++++.+.|.++++
T Consensus 384 -~~Ris~~~-----~~~~~i~~~~~~l~~~l~ 409 (412)
T 1ajs_A 384 -SGRINMCG-----LTTKNLDYVATSIHEAVT 409 (412)
T ss_dssp -TSEEEGGG-----CCTTTHHHHHHHHHHHHH
T ss_pred -CcEEEeee-----CCHHHHHHHHHHHHHHHH
Confidence 26998653 247899999999988875
No 187
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.85 E-value=1.8e-20 Score=197.37 Aligned_cols=292 Identities=16% Similarity=0.120 Sum_probs=185.4
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 212 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g 212 (520)
+++..+++| +++++++|.+. .|.++||++|+.+++.++++|||+|++.++.|++...... ..+...|
T Consensus 80 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G 146 (430)
T 3ri6_A 80 SNPTVEDLE----QRLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQ----KTLPSFG 146 (430)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----THHHHTT
T ss_pred CCHHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcC
Confidence 456667777 67888999865 3566899999999999999999999999998876532110 0122335
Q ss_pred ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008 213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 290 (520)
Q Consensus 213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~ 290 (520)
. +++.++.+ |++++++++++ ++|+|++..++||+ ..|+++|+++|+++|++||+|++|..+.. .
T Consensus 147 ~--~~~~v~~~------d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-----~ 212 (430)
T 3ri6_A 147 I--EVRFVDVM------DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-----L 212 (430)
T ss_dssp C--EEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-----C
T ss_pred C--EEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 4 56665543 89999999988 89999999998886 78999999999999999999999876643 2
Q ss_pred CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcc-----hhh---------HHHhhcccCCCCCCCCChHHHHHHHH
Q 010008 291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVL-----GVE---------LESAINNAVFPGLQGGPHNHTIGGLA 352 (520)
Q Consensus 291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~-----~~~---------l~~~i~~~~~p~~~g~p~~~~iaala 352 (520)
.|.. ++|+++.|+||++.|+ .||+++.+..... ..+ +..++...... ..|+......+.+
T Consensus 213 ~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~-~~g~~~~~~~a~l- 290 (430)
T 3ri6_A 213 EAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQ-NLGPSLSPHNAYL- 290 (430)
T ss_dssp CGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHH-HHCCCCCHHHHHH-
T ss_pred ChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHH-hcCCCCCHHHHHH-
Confidence 3344 6899999999999887 6788886543110 001 11111111000 1122111122221
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEE-ecCCCC--------------Ce-eEEEEecCCCCCHHHHHHH
Q 010008 353 VCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKL-VSGGSD--------------NH-LVLVDLRPMGIDGARVEKI 415 (520)
Q Consensus 353 ~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v-~~~gt~--------------~~-~~~vd~~~~g~~~~~~~~~ 415 (520)
+++.+ ..+....++..+|++.+++.|.+ .++.. ..++-. .. ++++.+. +.+.+.++
T Consensus 291 -~l~~l--~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~----~~~~~~~~ 363 (430)
T 3ri6_A 291 -QSLGL--ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE----SKEASYRF 363 (430)
T ss_dssp -HHHHH--HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHH
T ss_pred -HHhhh--hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC----CHHHHHHH
Confidence 22221 23455677888999999999987 46653 333311 22 6677764 23444455
Q ss_pred Hhh---cCeEEcCCCC------CCC---C---------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008 416 LDM---ASITLNKNSV------PGD---K---------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 468 (520)
Q Consensus 416 L~~---~gI~v~~~~~------Pg~---~---------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l 468 (520)
++. .++.++.+.+ |.. . ....++.||++.. .|+.+.+.+.|++++
T Consensus 364 ~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG--------~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 364 MDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG--------IEEIEDLKEDILQAL 429 (430)
T ss_dssp HHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC--------SSCHHHHHHHHHHHH
T ss_pred HHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHhh
Confidence 544 4444443211 100 0 0123567999864 367777777777665
No 188
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.85 E-value=1.1e-19 Score=188.82 Aligned_cols=319 Identities=17% Similarity=0.103 Sum_probs=200.1
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--- 181 (520)
.+|.|.+++...+..... + +.. | ..+...++ ++++++++|.+. .+...+|++|+.+++.+++.
T Consensus 56 ~~p~v~~a~~~~~~~~~~--~-~~~-~-~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~~a~~~al~~~~~~~~ 121 (406)
T 4adb_A 56 AHPELREALNEQASKFWH--T-GNG-Y-TNEPVLRL----AKKLIDATFADR-----VFFCNSGAEANEAALKLARKFAH 121 (406)
T ss_dssp TCHHHHHHHHHHHTTCSC--C-CTT-S-CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--c-cCC-c-CCHHHHHH----HHHHHhhCCCCe-----EEEeCcHHHHHHHHHHHHHHHHH
Confidence 478999999887754321 1 111 2 23333443 378889998762 24456777999999988865
Q ss_pred ----CC-CEEEEcCCCCCccccccccccccccc---cccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008 182 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVS---GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253 (520)
Q Consensus 182 ----pG-D~Vl~~~~~~~ghls~g~~~~~~~v~---~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 253 (520)
+| |+|++.++.|.+.............. +.....+...++ ..|+++|++++++ ++++|+++ |+|
T Consensus 122 ~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~-p~n 193 (406)
T 4adb_A 122 DRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAA------YNDINSASALIDD-STCAVIVE-PIQ 193 (406)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEEC------TTCHHHHHTTCST-TEEEEEEC-SEE
T ss_pred hcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeC------CCcHHHHHHHhcC-CeEEEEEe-CCc
Confidence 66 99999999875542111000000000 000000111221 2489999999986 89999998 777
Q ss_pred CC--C-----CCHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCccc-CCCCceEEEeeCCCc
Q 010008 254 PR--D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPV 322 (520)
Q Consensus 254 p~--~-----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l-~GprgG~I~~~~~~~ 322 (520)
|+ . .++++|.++|+++|++||+|++|. |+...+... .... ..|+++ +||++ +|.|+|++++++
T Consensus 194 p~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r~G~~~~~~--- 267 (406)
T 4adb_A 194 GEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLLT--TAKALGGGFPVGALLATE--- 267 (406)
T ss_dssp TTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECH---
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEEE--echhhcCCCCeEEEEEcH---
Confidence 64 2 268899999999999999999975 543332210 0011 357774 58998 566889999987
Q ss_pred chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEecC-CCCCeeEE
Q 010008 323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSG-GSDNHLVL 399 (520)
Q Consensus 323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~~-gt~~~~~~ 399 (520)
++.+.+.........+. +....++...+++.+.. +++.+++.++++.+.+.|.+.+ +.+... .....+++
T Consensus 268 ---~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~ 340 (406)
T 4adb_A 268 ---ECARVMTVGTHGTTYGG-NPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIG 340 (406)
T ss_dssp ---HHHHTCCTTSSCCSSTT-CHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEE
T ss_pred ---HHHhhhccCCcCCCCCC-CHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEE
Confidence 77777765433333333 33444444456776543 5667888888888988887632 111110 01234556
Q ss_pred EEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 400 VDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 400 vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
+.+... ..+..++.+.|.+.||.+.. + .++.+|++.+.. .+++|++++++.|.++++..
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~gi~v~~----~-----~~~~iRi~~~~~----~~~e~i~~~~~~l~~~l~~~ 400 (406)
T 4adb_A 341 CVLNADYAGQAKQISQEAAKAGVMVLI----A-----GGNVVRFAPALN----VSEEEVTTGLDRFAAACEHF 400 (406)
T ss_dssp EEECTTTTTCHHHHHHHHHHTTEECEE----S-----STTEEEECCCTT----CCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHHCCcEEee----c-----CCCeEEEECCCC----CCHHHHHHHHHHHHHHHHHH
Confidence 666431 12567788888888999853 2 257899976644 45899999999999988643
No 189
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.85 E-value=2.6e-19 Score=185.33 Aligned_cols=281 Identities=16% Similarity=0.123 Sum_probs=183.7
Q ss_pred HHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC
Q 010008 146 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 225 (520)
Q Consensus 146 ~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~ 225 (520)
+.+++++|.+ + .|..+||++|+..++.+++++||+|++.++.|.+.+.... ......|. +++.++.
T Consensus 59 ~~la~~~~~~-~----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~--- 124 (386)
T 1cs1_A 59 RALAELEGGA-G----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD----SLAKRGCY--RVLFVDQ--- 124 (386)
T ss_dssp HHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HHHTTTSC--EEEEECT---
T ss_pred HHHHHHhCCC-c----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHH----HHHHhcCC--EEEEeCC---
Confidence 6788899987 2 4566999999999999999999999999998865321100 00122344 5555443
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEec
Q 010008 226 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT 302 (520)
Q Consensus 226 ~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S 302 (520)
.|++++++.+++ ++++|+++.++||+ ..|+++|+++|+++|+++++|++|..+... .++. ++|++++|
T Consensus 125 ---~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-----~~~~~~~di~~~s 195 (386)
T 1cs1_A 125 ---GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ-----NPLALGADLVLHS 195 (386)
T ss_dssp ---TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----CGGGGTCSEEEEE
T ss_pred ---CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----CccccCceEEEEc
Confidence 289999999987 89999999888875 789999999999999999999998765432 1223 58999999
Q ss_pred cCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010008 303 THKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS 379 (520)
Q Consensus 303 ~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~ 379 (520)
+||++.||. +|+++++++ ++.+.+.....+. .++.+....++...+++ .+....++..++++.+.+
T Consensus 196 ~sK~~~~~~~~~~G~~~~~~~-----~l~~~l~~~~~~~-~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~ 264 (386)
T 1cs1_A 196 CTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNI-GVTGGAFDSYLLLRGLR-----TLVPRMELAQRNAQAIVK 264 (386)
T ss_dssp TTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHH-TCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCceeEEEEeCcH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHH
Confidence 999987654 399999863 4555554322211 12222222222111222 234556778888898999
Q ss_pred HHHHCC-CEEe-cCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC---------CC--C
Q 010008 380 RLVELG-YKLV-SGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV---------PG--D 431 (520)
Q Consensus 380 ~L~~~G-~~v~-~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~---------Pg--~ 431 (520)
.|.+.. +.-+ .++ ....++.+.+.. ..+.+.+.|++.||.+..... |. .
T Consensus 265 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~ 341 (386)
T 1cs1_A 265 YLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLFTLAESLGGVESLISHAATMT 341 (386)
T ss_dssp HHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---CHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTT
T ss_pred HHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC---CHHHHHHHHHhCCcceEcccCCCcceeeecccccc
Confidence 887742 2211 111 013455556542 256788899999998863110 10 0
Q ss_pred -C--C-------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 432 -K--S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 432 -~--~-------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
. + ...++.|||+.+.. .++++++.+.++|+++
T Consensus 342 ~~~~~~~~~~~~g~~~~~iRis~~~~----~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 342 HAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGFRAA 383 (386)
T ss_dssp TTTSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCCCCCeEEEEEccC----CHHHHHHHHHHHHHHh
Confidence 0 0 01257899998753 3467777777776654
No 190
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.84 E-value=6.1e-21 Score=197.59 Aligned_cols=330 Identities=15% Similarity=0.149 Sum_probs=195.7
Q ss_pred ccceEecCC---C----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeee
Q 010008 94 KSLELIASE---N----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQ 164 (520)
Q Consensus 94 ~~i~Liase---n----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~ 164 (520)
+.|+|..++ + ++++.|.+++...+.+....+|.. .....++++...+++.+..+ ++++++ +.++
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~la~~~~~~~~~~~~~~~v-~~~~ 99 (396)
T 2q7w_A 27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG------IDGIPEFGRCTQELLFGKGSALINDKRA-RTAQ 99 (396)
T ss_dssp -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EEEE
T ss_pred CceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCC------CCCCHHHHHHHHHHHhcCCCCccccccE-EEEe
Confidence 567887665 1 456999999987765422223421 11123444333333322111 234422 1012
Q ss_pred cCChHHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhc
Q 010008 165 PLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF 241 (520)
Q Consensus 165 ~~sGs~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~ 241 (520)
..+|++|+.+++.++ ++|||+|++++|.|.++.. .+...|. +++.+++++ +++.+|++++++.+++.
T Consensus 100 ~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~ 169 (396)
T 2q7w_A 100 TPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGL--EVREYAYYDAENHTLDFDALINSLNEA 169 (396)
T ss_dssp ESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred cccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHH--------HHHHcCC--ceEEEecccCCCCCcCHHHHHHHHHhC
Confidence 444559999888665 5799999999998765421 2233454 555665532 35789999999998753
Q ss_pred --CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccc--cc-C-CCCC---cccEEEeccCccc
Q 010008 242 --RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS--VV-A-DPFK---YCDVVTTTTHKSL 307 (520)
Q Consensus 242 --~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~--~~-~-~p~~---~aDiv~~S~hK~l 307 (520)
++++++++.++||+ .. ++++|+++|+++|+++|+|++|. ++...+ .. + ..+. ..++++.|+||++
T Consensus 170 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 248 (396)
T 2q7w_A 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ-GFARGLEEDAEGLRAFAAMHKELIVASSYSXNF 248 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCccchhHHHHHHHhcCCcEEEEEeccccc
Confidence 35677888899887 44 46689999999999999999954 333221 00 0 0011 1347889999987
Q ss_pred --CCCCceEEEe--eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHH
Q 010008 308 --RGPRGGMIFF--KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNCRALA 378 (520)
Q Consensus 308 --~GprgG~I~~--~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~-----~~~~~~~~~~~i~~na~~l~ 378 (520)
+|.|.|++++ +++. ...++.+.+....... .++++....++...+|+.. .....++..+++.++++.+.
T Consensus 249 ~~~G~riG~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 326 (396)
T 2q7w_A 249 GLYNERVGACTLVAADSE-TVDRAFSQMKAAIRAN-YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp TCGGGCCEEEEEECSSHH-HHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred cccccccceEEEEcCCHH-HHHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899987 2210 0002333333211112 2232333333333344321 01233556677888899999
Q ss_pred HHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008 379 SRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE 454 (520)
Q Consensus 379 ~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~ 454 (520)
+.|.+.| +++..+. .+.++|+++ +.+.+.+.|+++||.+. | ++||++... ++
T Consensus 327 ~~L~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~l~~~gv~v~----~---------~~Ris~~~~-----~~ 382 (396)
T 2q7w_A 327 NTLQEKGANRDFSFIIKQ-NGMFSFSGL-----TKEQVLRLREEFGVYAV----A---------SGRVNVAGM-----TP 382 (396)
T ss_dssp HHHHHTTCCSCCTHHHHC-CSSEEECCC-----CHHHHHHHHHHHCEECC----T---------TCEEEGGGC-----CT
T ss_pred HHHHhcCCCCCcceecCC-CceEEEecC-----CHHHHHHHHHhcCeeec----C---------CceEEEeec-----CH
Confidence 9998876 6654432 234445443 35678888889999983 2 369987632 47
Q ss_pred HHHHHHHHHHHHH
Q 010008 455 KEFVAIADFIHEG 467 (520)
Q Consensus 455 ~d~~~la~~i~~~ 467 (520)
+|++++++.|+++
T Consensus 383 e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 383 DNMAPLCEAIVAV 395 (396)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8999999988765
No 191
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.84 E-value=4.3e-20 Score=195.84 Aligned_cols=327 Identities=17% Similarity=0.176 Sum_probs=196.5
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCC----
Q 010008 107 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP---- 182 (520)
Q Consensus 107 ~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~p---- 182 (520)
+.|.+++...+... . ..|+..+...+++ +++++++|.+. .+.+++|++|+.+++.++++|
T Consensus 53 ~~v~~a~~~~l~~~----~---~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~~gt~A~~~al~~~~~~~~~~ 116 (467)
T 2oqx_A 53 GAVTQSMQAAMMRG----D---EAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQE 116 (467)
T ss_dssp SCCCHHHHHHTTSC----C---CCSSSCHHHHHHH----HHHHHHHCCSE-----EEEEC--CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC----c---ceeccCchhHHHH----HHHHHHhCcCc-----EEEcCCcHHHHHHHHHHHhcccccc
Confidence 77888887766421 1 1344445555555 67888888752 234456779999999999888
Q ss_pred -C----CEEEEcCCCCCccccccccccccccccccceEEEEE------cccC---CCCCCCCHHHHHHHhhh---cCCcE
Q 010008 183 -H----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP------YRLD---ESTGLVDYDMLEKTAIL---FRPKL 245 (520)
Q Consensus 183 -G----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~------~~~d---~~~~~iD~d~le~~i~~---~~pkl 245 (520)
| |+|+.. ..|+..... .....|. ..+. ++.+ +.++.+|+++|++++++ .++++
T Consensus 117 ~G~~~~d~Ii~~-~~h~~t~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~ 186 (467)
T 2oqx_A 117 KGLDRSKMVAFS-NYFFDTTQG-------HSQINGC--TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPY 186 (467)
T ss_dssp HCCCTTTCEEEE-SSCCHHHHH-------HHHHTTC--EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCC
T ss_pred CCCCccceEEec-ccccccchh-------hhhccCc--ceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeE
Confidence 9 997765 344211000 0011111 1111 1111 13467899999999985 26899
Q ss_pred EEEcCCCCCC---CC---CHHHHHHHHHHhCCEEEEechhhc-cc--------ccccccCCCC-----CcccEEEeccCc
Q 010008 246 IIAGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHIS-GL--------VAASVVADPF-----KYCDVVTTTTHK 305 (520)
Q Consensus 246 Ii~~~s~~p~---~~---d~~~i~~ia~~~g~~li~D~Ah~~-gl--------i~~~~~~~p~-----~~aDiv~~S~hK 305 (520)
|++++++|++ .. ++++|+++|++||++||+|++|.. +. ...+.....+ .++|++++|+||
T Consensus 187 vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK 266 (467)
T 2oqx_A 187 IVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKK 266 (467)
T ss_dssp EEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSS
T ss_pred EEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccc
Confidence 9998877763 33 478999999999999999988866 33 1222211111 247888999999
Q ss_pred ccCCCCceEEEeeCC-CcchhhHHHhhcccC--CCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008 306 SLRGPRGGMIFFKKD-PVLGVELESAINNAV--FPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 380 (520)
Q Consensus 306 ~l~GprgG~I~~~~~-~~~~~~l~~~i~~~~--~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~ 380 (520)
++..|.||+++++++ .. +...++.... ..+. .++.....++++..+++.... ++..++..++++.+.+.
T Consensus 267 ~~g~~~Gg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 267 DAMVPMGGLLCMKDDSFF---DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp TTCCSSCEEEEECSGGGH---HHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEecChhHH---HHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHHH
Confidence 997676889888772 00 1222222211 1111 233333444445444443322 23445567788999999
Q ss_pred HHHCCCEEecCCCCCeeEEEEecC--CCCC-----HHHHHHHH-hhcCeEEcCCCC------C--CCCCCCCCCEEEEcc
Q 010008 381 LVELGYKLVSGGSDNHLVLVDLRP--MGID-----GARVEKIL-DMASITLNKNSV------P--GDKSALVPGGIRIGS 444 (520)
Q Consensus 381 L~~~G~~v~~~gt~~~~~~vd~~~--~g~~-----~~~~~~~L-~~~gI~v~~~~~------P--g~~~~~~~~giRig~ 444 (520)
|.+.|+++. + ...+++++++.. .+++ +..+.+.| .+.||.+..... | |...+...+.||+++
T Consensus 341 L~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~ 418 (467)
T 2oqx_A 341 LEEIGVVCQ-Q-AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTI 418 (467)
T ss_dssp HHHTTCCEE-E-ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECC
T ss_pred HHHCCCeee-c-CCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEe
Confidence 988888776 3 234667777742 2233 33446666 899999864210 1 000011247899987
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 445 PAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 445 ~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+..+ .+++|++++++.|.++++.
T Consensus 419 ~~~~---~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 419 PRAT---YTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CTTT---SCHHHHHHHHHHHHHHHHS
T ss_pred cCCC---CCHHHHHHHHHHHHHHHhh
Confidence 7430 3589999999999998864
No 192
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.84 E-value=5e-19 Score=186.82 Aligned_cols=321 Identities=15% Similarity=0.104 Sum_probs=200.6
Q ss_pred cceEecCCC--C---ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 95 SLELIASEN--F---TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 95 ~i~Liasen--~---~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
.|++..+.+ . .+|.|.+|+...+... .. ....| ..+...+++ +++++++|.+. .+..+||+
T Consensus 78 ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~-~~--~~~~~--~~~~~~~l~----~~la~~~g~~~-----v~~~~sGs 143 (439)
T 2oat_A 78 YFDFLSSYSAVNQGHCHPKIVNALKSQVDKL-TL--TSRAF--YNNVLGEYE----EYITKLFNYHK-----VLPMNTGV 143 (439)
T ss_dssp EEESSGGGGTTTTCBTCHHHHHHHHHHHTTC-SC--CCTTS--EESSHHHHH----HHHHHHHTCSE-----EEEESSHH
T ss_pred EEEccCCcccccCCCCCHHHHHHHHHHHHhc-Cc--ccCcc--CCHHHHHHH----HHHHHhcCCCE-----EEEeCCHH
Confidence 466655432 2 6799999998887542 11 11112 223344444 57778888532 24456788
Q ss_pred HHHHHHHHhhC---------CCC-CEEEEcCCCCCccccccccccccccccccc----------eEEEEEcccCCCCCCC
Q 010008 170 PANFEVYTAIL---------KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLV 229 (520)
Q Consensus 170 ~A~~~~l~all---------~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~----------~~~~v~~~~d~~~~~i 229 (520)
+|+.+++.++. .|| |+|++.++.|.|..... +...|. ...++.++. .
T Consensus 144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~p~~~~v~~~~~------~ 210 (439)
T 2oat_A 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSA-------ISSSTDPTSYDGFGPFMPGFDIIPY------N 210 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHH-------HTTCCCHHHHTTSCSCCTTEEEECS------S
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhH-------hhcCCChhcccCCCCCCCCeEEeCC------C
Confidence 99999888764 478 99999998764432111 111110 001223222 3
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCC-C-CC----CHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEE
Q 010008 230 DYDMLEKTAILFRPKLIIAGASAYP-R-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVT 300 (520)
Q Consensus 230 D~d~le~~i~~~~pklIi~~~s~~p-~-~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~ 300 (520)
|+++|+++++..++++|++...+++ + .. ++++|+++|+++|++||+|++| .|+...+.. . ..+. ..|++
T Consensus 211 d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~g~~g~~~~~~~~~~~~Di~- 288 (439)
T 2oat_A 211 DLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIV- 288 (439)
T ss_dssp CHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEE-
T ss_pred CHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCcchhHHHhCCCCcEE-
Confidence 8999999995337788888754332 2 33 7999999999999999999998 564332211 0 1111 36877
Q ss_pred eccCcccCC--CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008 301 TTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 378 (520)
Q Consensus 301 ~S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~ 378 (520)
|++|++.| .++|++++++ ++.+.+.........+++.. ..++...+++.+..+ ++.+++.++++++.
T Consensus 289 -t~sK~l~~G~~~~G~v~~~~------~~~~~l~~~~~~~t~~~~~~-~~aaa~aal~~~~~~---~~~~~~~~~~~~l~ 357 (439)
T 2oat_A 289 -LLGKALSGGLYPVSAVLCDD------DIMLTIKPGEHGSTYGGNPL-GCRVAIAALEVLEEE---NLAENADKLGIILR 357 (439)
T ss_dssp -EECGGGGTTSSCCEEEEECH------HHHTTSCTTSSCCSSTTCHH-HHHHHHHHHHHHHHT---THHHHHHHHHHHHH
T ss_pred -EecccccCCCCCeEEEEECH------HHHhccCCCCcccCCCcCHH-HHHHHHHHHHHHhhh---hHHHHHHHHHHHHH
Confidence 66799854 5899999987 67666654322233333333 333334466655322 45677888889999
Q ss_pred HHHHHCCCEEec--CCCCCeeEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008 379 SRLVELGYKLVS--GGSDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 455 (520)
Q Consensus 379 ~~L~~~G~~v~~--~gt~~~~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~ 455 (520)
+.|.+.+++++. .+ ...++++++... +.+..++.+.|.+.||.+. |+ .++.+|++.+.. .+++
T Consensus 358 ~~L~~l~~~~~~~~~~-~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~----~~-----~~~~iRi~~~~~----~t~e 423 (439)
T 2oat_A 358 NELMKLPSDVVTAVRG-KGLLNAIVIKETKDWDAWKVCLRLRDNGLLAK----PT-----HGDIIRFAPPLV----IKED 423 (439)
T ss_dssp HHHTTSCTTTEEEEEE-ETTEEEEEECCCSSCCHHHHHHHHHHTTEECC----BS-----SSSEEEECCCTT----CCHH
T ss_pred HHHHHhcCCCcEEEEe-eeeEEEEEEecCccHHHHHHHHHHHHCCeEEe----cC-----CCCEEEEECccC----CCHH
Confidence 999876554321 11 234566777532 1356778888888999984 32 257899986643 4689
Q ss_pred HHHHHHHHHHHHHH
Q 010008 456 EFVAIADFIHEGVE 469 (520)
Q Consensus 456 d~~~la~~i~~~l~ 469 (520)
|++++++.|+++++
T Consensus 424 ~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 424 ELRESIEIINKTIL 437 (439)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 193
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.84 E-value=9.8e-19 Score=183.52 Aligned_cols=334 Identities=14% Similarity=0.038 Sum_probs=201.5
Q ss_pred cceEecCC--CC---ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 95 SLELIASE--NF---TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 95 ~i~Liase--n~---~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
.|++.++. ++ .+|.|++++...+.+... ++..+| . .+...+ + +++++++++++++++ +..++|+
T Consensus 45 ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~--~~~~~~-~-~~~~~~---l-~~~la~~~~~~~~~v---~~~~ggt 113 (429)
T 1s0a_A 45 LVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH--VMFGGI-T-HAPAIE---L-CRKLVAMTPQPLECV---FLADSGS 113 (429)
T ss_dssp EEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC--CCCSSE-E-CHHHHH---H-HHHHHHHSCTTCCEE---EEESSHH
T ss_pred EEEcCccHhhccCCCCCHHHHHHHHHHHHhccc--cccccc-C-CHHHHH---H-HHHHHHhCCCCCCEE---EEeCCHH
Confidence 35555554 22 579999999988754321 111112 1 122222 2 357889998776522 3334566
Q ss_pred HHHHHHHHhhC---C----CCCEEEEcCCCCCccccccccc------cccccccccceEEEEEcccCC---CCCCCCHHH
Q 010008 170 PANFEVYTAIL---K----PHDRIMGLDLPHGGHLSHGFMT------PKRRVSGTSIYFESMPYRLDE---STGLVDYDM 233 (520)
Q Consensus 170 ~A~~~~l~all---~----pGD~Vl~~~~~~~ghls~g~~~------~~~~v~~~g~~~~~v~~~~d~---~~~~iD~d~ 233 (520)
+|+..++.++. + |||+|+++++.+.+........ ..............++++.+. ..+.+|+++
T Consensus 114 ea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 193 (429)
T 1s0a_A 114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHH
Confidence 99998887653 2 7999999998764431100000 000000000012444443210 123589999
Q ss_pred HHHHhhh--cCCcEEEEcCC-CCCC--CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEe
Q 010008 234 LEKTAIL--FRPKLIIAGAS-AYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTT 301 (520)
Q Consensus 234 le~~i~~--~~pklIi~~~s-~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~ 301 (520)
|++++++ .++++|+++.. ++++ ..+ +++|+++|+++|++||+|++|. |+...+.. . ..+. ..|+++
T Consensus 194 l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~g~~g~~~~~~~~~~~~d~~t- 271 (429)
T 1s0a_A 194 FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILC- 271 (429)
T ss_dssp HHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE-
T ss_pred HHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCcccchHHHhhhcCCCCCEEE-
Confidence 9999874 25677887765 5654 455 9999999999999999999975 33221210 0 0011 467775
Q ss_pred ccCcccCC--CCceEEEeeCCCcchhhHHHhhcccC-----CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008 302 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC 374 (520)
Q Consensus 302 S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~~-----~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na 374 (520)
++|+|.| .|.|++++++ ++.+.+.... ..+..+ .+...+++..++++.+.+. ++.+++.+++
T Consensus 272 -~sK~l~~G~~~iG~~~~~~------~~~~~l~~~~~~~~~~~~t~~-~n~~~~~a~~aal~~~~~~---~~~~~~~~~~ 340 (429)
T 1s0a_A 272 -LGKALTGGTMTLSATLTTR------EVAETISNGEAGCFMHGPTFM-GNPLACAAANASLAILESG---DWQQQVADIE 340 (429)
T ss_dssp -ECGGGGTSSSCCEEEEECH------HHHHHHHTSTTSSCSCCCTTT-TCHHHHHHHHHHHHHHHTC---HHHHHHHHHH
T ss_pred -ecccccCCCccceEEEeCH------HHHHHhhcCCCcccccCCCCC-CCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 5599865 6789999987 6666665421 112222 2444555555677765543 3567777788
Q ss_pred HHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008 375 RALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 450 (520)
Q Consensus 375 ~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~ 450 (520)
+.+.+.|.+. ++..+.+ ...++++++.. ..+...+.+.|.+.||.+.. + .+.+||+.+..+
T Consensus 341 ~~l~~~L~~l~~~~~~~~~~~--~g~~~~~~~~~-~~~~~~l~~~l~~~Gi~v~~----~------~~~iRis~~~~~-- 405 (429)
T 1s0a_A 341 VQLREQLAPARDAEMVADVRV--LGAIGVVETTH-PVNMAALQKFFVEQGVWIRP----F------GKLIYLMPPYII-- 405 (429)
T ss_dssp HHHHHHHGGGGGCTTEEEEEE--ETTEEEEEESS-CBCHHHHHHHHHHTTEECCC----B------TTEEEECCCTTC--
T ss_pred HHHHHHHHHHhcCCCEEEEEE--eeEEEEEEECC-cccHHHHHHHHHHCCCEEec----c------CCEEEEECCCCC--
Confidence 8999998763 3332222 23456777753 34667788888889999842 1 368999976444
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 010008 451 GFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 451 g~~~~d~~~la~~i~~~l~ 469 (520)
+++|++++++.|+++++
T Consensus 406 --t~e~i~~~~~~l~~~~~ 422 (429)
T 1s0a_A 406 --LPQQLQRLTAAVNRAVQ 422 (429)
T ss_dssp --CHHHHHHHHHHHHHHTS
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 48999999999988764
No 194
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.84 E-value=7.7e-20 Score=190.34 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=177.8
Q ss_pred HHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC
Q 010008 145 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 224 (520)
Q Consensus 145 ~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~ 224 (520)
++++++++|.+. .|..+||++|+.+++. +++|||+|++.++.|++.+.... ..+...|. +++.++++
T Consensus 61 r~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~G~--~v~~v~~~- 127 (393)
T 1n8p_A 61 ERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFT----KVANAHGV--ETSFTNDL- 127 (393)
T ss_dssp HHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHH----HTSTTTCS--CCEEESSH-
T ss_pred HHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHH----HHHHHcCc--EEEEeCCC-
Confidence 378889999872 4667899999999999 99999999999988765432110 01223344 44454443
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHh----CCEEEEechhhcccccccccCCCCC-ccc
Q 010008 225 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFK-YCD 297 (520)
Q Consensus 225 ~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~----g~~li~D~Ah~~gli~~~~~~~p~~-~aD 297 (520)
| +++++++++ ++++|++..++||+ ..|+++|.++|+++ |+++++|++|..+... .++. ++|
T Consensus 128 -----d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~~~d 195 (393)
T 1n8p_A 128 -----L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNFGAD 195 (393)
T ss_dssp -----H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGGTCS
T ss_pred -----h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHcCCe
Confidence 7 899999987 89999999888886 78999999999999 9999999998766431 2333 689
Q ss_pred EEEeccCcccCCC--Cc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008 298 VVTTTTHKSLRGP--RG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC 374 (520)
Q Consensus 298 iv~~S~hK~l~Gp--rg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na 374 (520)
++++|+||++.++ |. |+++++++ ++.+.+.....+ ..+++.....+++..+++ .+....++..+|+
T Consensus 196 i~~~S~sK~~g~~G~rigG~~~~~~~-----~~~~~l~~~~~~-~g~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~ 264 (393)
T 1n8p_A 196 IVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQFLQNA-IGAIPSPFDAWLTHRGLK-----TLHLRVRQAALSA 264 (393)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHH-HCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHH
T ss_pred EEEEECcccccCCCCceeEEEEeCCH-----HHHHHHHHHHHh-cCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHH
Confidence 9999999998643 34 99998642 565555432111 011112111111111222 2455667778889
Q ss_pred HHHHHHHHHCC--CE-EecCC--------------C--C-CeeEEEEecCCCCCHHHHHHHHh---hcCeEEcCCC----
Q 010008 375 RALASRLVELG--YK-LVSGG--------------S--D-NHLVLVDLRPMGIDGARVEKILD---MASITLNKNS---- 427 (520)
Q Consensus 375 ~~l~~~L~~~G--~~-v~~~g--------------t--~-~~~~~vd~~~~g~~~~~~~~~L~---~~gI~v~~~~---- 427 (520)
+.+.+.|.+.+ +. +..++ . . .+++.+.+.. +......+++ ..+|.++.+.
T Consensus 265 ~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~---~~~~~~~~l~~l~~~~~~~s~G~~~s~ 341 (393)
T 1n8p_A 265 NKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG---GAEAASKFASSTRLFTLAESLGGIESL 341 (393)
T ss_dssp HHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS---CHHHHHHHHHHCSSSEECSCCCCSSCE
T ss_pred HHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC---cHHHHHHHHhhCCcceECCCCCCCcce
Confidence 99999987753 32 21221 0 1 3455666642 2234444444 3455554331
Q ss_pred --CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008 428 --VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 428 --~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
.|+..+ ....+.||+|+...++ +++++.+.++++++
T Consensus 342 ~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~----~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 342 LEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDT----DDLLEDIKQALKQA 391 (393)
T ss_dssp EECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred eeccccccccccCHHHHHhcCCCCCeEEEEEccCCH----HHHHHHHHHHHHHh
Confidence 232211 1124789999876554 77788888777654
No 195
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.84 E-value=2.4e-19 Score=185.98 Aligned_cols=307 Identities=15% Similarity=0.130 Sum_probs=196.3
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--- 181 (520)
.++.|.+++...+.+ +.. .+ +.| ..+..++++ +++++++|.+. .+..++|++|+.+++.++..
T Consensus 57 ~~~~v~~a~~~~~~~-~~~--~~-~~~-~~~~~~~l~----~~la~~~g~~~-----v~~~~gg~~a~~~al~~~~~~~~ 122 (397)
T 2ord_A 57 SHPRLVEAIKDQAEK-LIH--CS-NLF-WNRPQMELA----ELLSKNTFGGK-----VFFANTGTEANEAAIKIARKYGK 122 (397)
T ss_dssp TCHHHHHHHHHHHHH-CSC--CC-TTS-EEHHHHHHH----HHHHHTTTSCE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccc--Cc-ccc-CCHHHHHHH----HHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 579999999888754 222 11 122 233344444 67888888432 24456777999999888753
Q ss_pred ---C-CCEEEEcCCCCCccccccccccccccccccce-----E-----EEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008 182 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 182 ---p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~-----~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi 247 (520)
| +|+|+++++.+.+.... .+...|.. + .++.++. .|+++|++++++ ++++|+
T Consensus 123 ~~~~~~~~vi~~~~~yh~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~-~~~~v~ 188 (397)
T 2ord_A 123 KKSEKKYRILSAHNSFHGRTLG-------SLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSE-DVCAVF 188 (397)
T ss_dssp HHCTTCCEEEEEBTCCCCSSHH-------HHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCT-TEEEEE
T ss_pred cCCCCCceEEEEcCCcCCCchh-------hhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhc-CeEEEE
Confidence 6 47899888876443211 11122211 0 0223222 389999999987 899999
Q ss_pred EcCCCCCC-C-----CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCcccC-CCCceEEE
Q 010008 248 AGASAYPR-D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR-GPRGGMIF 316 (520)
Q Consensus 248 ~~~s~~p~-~-----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l~-GprgG~I~ 316 (520)
++.++||+ . .++++|+++|+++|++||+|++|. |+...+.. .++ . ..|++ |++|++. |.|.|+++
T Consensus 189 ~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~-~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~ 264 (397)
T 2ord_A 189 LEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKL-FAYQKYGVVPDVL--TTAKGLGGGVPIGAVI 264 (397)
T ss_dssp ECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-SHHHHHTCCCSEE--EECGGGGTTSCCEEEE
T ss_pred EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccc-hhhhhhCCCCCee--eeccccCCCcCeEEEE
Confidence 99888875 3 378999999999999999999985 65433321 111 1 36877 5579985 56789999
Q ss_pred eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec--CC
Q 010008 317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GG 392 (520)
Q Consensus 317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~--~g 392 (520)
+++ ++. .+.........+. +....++...+|+.... ++..+++.++++.+.+.|++. +++++. .+
T Consensus 265 ~~~------~~~-~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 333 (397)
T 2ord_A 265 VNE------RAN-VLEPGDHGTTFGG-NPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG 333 (397)
T ss_dssp ECS------TTC-CCCTTSSCCSSTT-CHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred Ech------Hhc-ccCCCCcCCCCCC-CHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE
Confidence 988 444 4432211112222 33444455556776543 345677788888888888764 343211 11
Q ss_pred CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
...++++++.. ..+..++.+.|.+.||.+. |+ .++.+|++.+.. .+++|++++++.|.++++
T Consensus 334 -~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~----~~-----~~~~iRis~~~~----~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 334 -MGLMIGIQFRE-EVSNREVATKCFENKLLVV----PA-----GNNTIRFLPPLT----VEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp -ETTEEEEEECT-TSCHHHHHHHHHHTTEECE----EE-----TTTEEEECCCTT----CCHHHHHHHHHHHHHHHH
T ss_pred -EeEEEEEEECC-hHHHHHHHHHHHHCCCEEc----cC-----CCCEEEEECCcC----CCHHHHHHHHHHHHHHHh
Confidence 23456677753 3356778888888999984 33 256899997643 458999999999988764
No 196
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.84 E-value=7.3e-20 Score=194.52 Aligned_cols=322 Identities=17% Similarity=0.147 Sum_probs=195.8
Q ss_pred ccceEecC-C--CCChHHHHHHHhhhhh---ccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008 94 KSLELIAS-E--NFTSRAVMEAVGSCLT---NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS 167 (520)
Q Consensus 94 ~~i~Lias-e--n~~~~~V~ea~~s~l~---~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s 167 (520)
+.|.|..+ + ..+++.|.+++..... .....+|. + .|.+..+.+ ++++++++|.+. .+.+++
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~--~--~g~~~~~~l----~~~la~~~g~~~-----~i~~~s 156 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYT--R--SGNPTRDAL----ESLLAKLDKADR-----AFCFTS 156 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBT--T--TCCHHHHHH----HHHHHHHHTCSE-----EEEESS
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCcccc--C--CCCHHHHHH----HHHHHHHhCCCe-----EEEECC
Confidence 45666543 3 3467777777653211 11011221 1 244444444 478899999862 355688
Q ss_pred hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008 168 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247 (520)
Q Consensus 168 Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi 247 (520)
|++|+.+++. +++|||+|+++++.|+++.... ...+...|. +++.++++ |++++++++++ ++|+|+
T Consensus 157 Gt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~----~~~~~~~G~--~v~~v~~~------d~~~l~~~i~~-~tk~v~ 222 (464)
T 1ibj_A 157 GMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLL----SQVVPRSGV--VVKRVNTT------KLDEVAAAIGP-QTKLVW 222 (464)
T ss_dssp HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHH----HHTSGGGTC--EEEEECTT------SHHHHHHHCCS-SEEEEE
T ss_pred HHHHHHHHHH-HhCCCCEEEEECCCchhHHHHH----HHHHHHcCC--EEEEeCCC------CHHHHHHHhcc-CceEEE
Confidence 9999887764 8899999999999886542100 001223454 55665542 89999999987 899999
Q ss_pred EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCC---CceEEEeeCCC
Q 010008 248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDP 321 (520)
Q Consensus 248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~ 321 (520)
+++++||+ ..|+++|+++|+++|+++++|++|+.|... .++. ++|++++|+||++.|| ++|+++++++
T Consensus 223 l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~-----~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~- 296 (464)
T 1ibj_A 223 LESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE- 296 (464)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC-----CGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH-
T ss_pred EeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC-----ChhhcCCEEEEECCcccccCCCCCcEEEEEEChH-
Confidence 99998886 789999999999999999999998766431 2232 5899999999999765 6699999863
Q ss_pred cchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC---------------
Q 010008 322 VLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--------------- 385 (520)
Q Consensus 322 ~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--------------- 385 (520)
++.+.+..... .+ .+.....+.+++ .+++ ......++...++..+.+.|++.+
T Consensus 297 ----~l~~~l~~~~~~~g-~~~~~~~~~a~~-~al~-----~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~ 365 (464)
T 1ibj_A 297 ----KLAKEVYFLQNSEG-SGLAPFDCWLCL-RGIK-----TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPG 365 (464)
T ss_dssp ----HHHHHHHHHHHHTT-CBCCHHHHHHHH-HHHT-----THHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTT
T ss_pred ----HHHHHHHHHHHhcC-CCCCHHHHHHHH-hchh-----hHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcc
Confidence 56555543221 11 111122222222 2332 122334445566666777776532
Q ss_pred CEEecCCC--CCeeEEEEecCCCCC-HHHHHHHHhhcCeEEcCCC------CCCCC----------C--CCCCCEEEEcc
Q 010008 386 YKLVSGGS--DNHLVLVDLRPMGID-GARVEKILDMASITLNKNS------VPGDK----------S--ALVPGGIRIGS 444 (520)
Q Consensus 386 ~~v~~~gt--~~~~~~vd~~~~g~~-~~~~~~~L~~~gI~v~~~~------~Pg~~----------~--~~~~~giRig~ 444 (520)
+.+..+.. ...++++++. +.. ...+.+.|...||.++.+. .|+.. . ...++.||++.
T Consensus 366 ~~~~~~~~~g~g~~~~~~l~--~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsv 443 (464)
T 1ibj_A 366 HHLHFSQAKGAGSVFSFITG--SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISA 443 (464)
T ss_dssp HHHHTTTCSCCCSEEEEECS--CHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEEC
T ss_pred hHHHhccCCCCceEEEEEEC--CHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEe
Confidence 22222111 1346677763 211 1235556666888876543 12100 0 11256799986
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHH
Q 010008 445 PAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 445 ~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.. +|++++.+.|++++.
T Consensus 444 g~--------edi~~li~~L~~al~ 460 (464)
T 1ibj_A 444 GI--------EDVDDLISDLDIAFK 460 (464)
T ss_dssp CS--------SCHHHHHHHHHHHHH
T ss_pred CC--------CCHHHHHHHHHHHHh
Confidence 52 788999988888775
No 197
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.83 E-value=1.2e-18 Score=183.55 Aligned_cols=312 Identities=13% Similarity=0.085 Sum_probs=190.5
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 180 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---- 180 (520)
.+|.|.+|+...+.+. . +.... | ..+...+++ +++++++|.+. .+..+||++|+.+++.++.
T Consensus 82 ~~p~v~~ai~~~~~~~-~--~~~~~-~-~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~a~~~~~ 147 (433)
T 1z7d_A 82 CHPNILNAMINQAKNL-T--ICSRA-F-FSVPLGICE----RYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY 147 (433)
T ss_dssp TCHHHHHHHHHHHTTC-S--CCCTT-S-EEHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-C--CccCC-c-CCHHHHHHH----HHHHhhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 6799999998887542 1 11111 2 223333333 67788888542 2445678899999888753
Q ss_pred -----CCC-CEEEEcCCCCCccccccccccccccccccce----------EEEEEcccCCCCCCCCHHHHHHHhhhcCCc
Q 010008 181 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGLVDYDMLEKTAILFRPK 244 (520)
Q Consensus 181 -----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~----------~~~v~~~~d~~~~~iD~d~le~~i~~~~pk 244 (520)
+|| |+|+++++.|.|..... +...|.. ..++.++ ..|+++|+++++..+++
T Consensus 148 ~~~g~~~gr~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~~ 214 (433)
T 1z7d_A 148 EVKKIPENMAKIVVCKNNFSGRTLGC-------ISASTTKKCTSNFGPFAPQFSKVP------YDDLEALEEELKDPNVC 214 (433)
T ss_dssp HTSCCCTTCCEEEEETTC---------------------------------CEEEEC------TTCHHHHHHHHTSTTEE
T ss_pred hccCCCCCCCeEEEEeCCcCCcchhh-------hcccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCCCCEE
Confidence 578 99999998765432111 1122210 0122222 13899999999423788
Q ss_pred EEEEcCCCCC-C-CC----CHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccC-C-CCce
Q 010008 245 LIIAGASAYP-R-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-G-PRGG 313 (520)
Q Consensus 245 lIi~~~s~~p-~-~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~-G-prgG 313 (520)
+|++...+++ + .. ++++|+++|+++|++||+|++|. |+...+.. . ..+. ..|++ |++|++. | .|+|
T Consensus 215 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G 291 (433)
T 1z7d_A 215 AFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPIS 291 (433)
T ss_dssp EEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred EEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeE
Confidence 8888754332 2 23 79999999999999999999984 64332211 0 1111 36877 5679985 4 5899
Q ss_pred EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec-
Q 010008 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS- 390 (520)
Q Consensus 314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~- 390 (520)
++++++ ++.+.+......+..+++ ....++...+|+.+... ++.+++.++++++.+.|.+. +++++.
T Consensus 292 ~v~~~~------~~~~~l~~~~~~~t~~~~-~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~ 361 (433)
T 1z7d_A 292 AVLAND------DIMLVIKPGEHGSTYGGN-PLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRD 361 (433)
T ss_dssp EEEECH------HHHTTCCTTCCCCTTTTC-HHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred EEEECH------HHHhhhccccccccCCCC-HHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 999987 676666543222223333 33343434466655322 35677778888888888763 553221
Q ss_pred -CCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 391 -GGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 391 -~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.+ ...++++++.....+...+.+.|.+.||.+. |+ ..+.+|++.+.. .+++|++++++.|+++++
T Consensus 362 ~~~-~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~----~~-----~~~~iRi~~~~~----~t~e~i~~~l~~l~~~l~ 427 (433)
T 1z7d_A 362 VRG-KGLLCAIEFKNELVNVLDICLKLKENGLITR----DV-----HDKTIRLTPPLC----ITKEQLDECTEIIVKTVK 427 (433)
T ss_dssp EEE-ETTEEEEEECTTTCCHHHHHHHHHHTTEECC----EE-----TTTEEEECCCTT----CCHHHHHHHHHHHHHHHH
T ss_pred EEe-eeeEEEEEEccChhHHHHHHHHHHHCCeEEe----cC-----CCCEEEEECCcC----CCHHHHHHHHHHHHHHHH
Confidence 11 2345677775321356778888888999984 32 256899986643 458999999999998875
Q ss_pred H
Q 010008 470 I 470 (520)
Q Consensus 470 ~ 470 (520)
.
T Consensus 428 ~ 428 (433)
T 1z7d_A 428 F 428 (433)
T ss_dssp H
T ss_pred H
Confidence 4
No 198
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.83 E-value=3.1e-19 Score=187.23 Aligned_cols=311 Identities=15% Similarity=0.126 Sum_probs=195.4
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--- 181 (520)
.+|.|.+++...+.. +.. ....| ..+...++ ++++++++|.+. .+..+||++|+.+++.++..
T Consensus 74 ~~p~v~~ai~~~~~~-~~~--~~~~~--~~~~~~~l----~~~la~~~g~~~-----v~~~~ggteA~~~al~~~~~~~~ 139 (420)
T 2pb2_A 74 CHPALVEALKSQGET-LWH--TSNVF--TNEPALRL----GRKLIDATFAER-----VLFMNSGTEANETAFKLARHYAC 139 (420)
T ss_dssp TCHHHHHHHHHHHTT-CCC--CCTTS--CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccc--ccCcc--CCHHHHHH----HHHHHhhCCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 579999999888753 222 11122 22333333 367888888532 23456777999999988765
Q ss_pred ----CC-CEEEEcCCCCCccccccccccccccccccce-----E-----EEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008 182 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246 (520)
Q Consensus 182 ----pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~-----~~v~~~~d~~~~~iD~d~le~~i~~~~pklI 246 (520)
|| |+|+++++.|.+..... +...|.. + .+..++. .|+++|++++++ ++++|
T Consensus 140 ~~~~~g~~~vi~~~~~yh~~~~~~-------~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~le~~i~~-~~~~v 205 (420)
T 2pb2_A 140 VRHSPFKTKIIAFHNAFHGRSLFT-------VSVGGQPKYSDGFGPKPADIIHVPF------NDLHAVKAVMDD-HTCAV 205 (420)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHHH-------HHHSSCHHHHTTSSSCCSCEEEECT------TCHHHHHHHCCT-TEEEE
T ss_pred hccCCCCCEEEEEeCCcCCcCHHH-------HHhcCCccccccCCCCCCCeEEecC------CCHHHHHHHhcc-CceEE
Confidence 78 49999998775432110 1111210 0 1222221 389999999987 89999
Q ss_pred EEcCCCCCC-C-----CCHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-CCCceEEE
Q 010008 247 IAGASAYPR-D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIF 316 (520)
Q Consensus 247 i~~~s~~p~-~-----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-GprgG~I~ 316 (520)
+++.+++++ . .++++|+++|+++|++||+|++| .|+...+... ..+. ..|++ |++|++. |.|.|+++
T Consensus 206 i~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~-~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~~~ 282 (420)
T 2pb2_A 206 VVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ-CGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSAML 282 (420)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEE
T ss_pred EEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC-cCcccCCcHHHHHhcCCCCCeE--EecccccCCCceEEEE
Confidence 998665543 2 36889999999999999999998 5654333210 0011 36887 4679984 56789999
Q ss_pred eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec--CC
Q 010008 317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GG 392 (520)
Q Consensus 317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~--~g 392 (520)
+++ ++.+.+.........++ +....++...+|+.+.. +++.+++.++++++.+.|.+. +++.+. .+
T Consensus 283 ~~~------~l~~~l~~~~~~~t~~~-~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 352 (420)
T 2pb2_A 283 TTQ------EIASAFHVGSHGSTYGG-NPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG 352 (420)
T ss_dssp ECH------HHHTTCC----CCEECC-CHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred EhH------HHHHhhcCCCcCcccCc-CHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 987 66666554222222233 33344444446776543 456777888888888888763 332211 11
Q ss_pred CCCeeEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 393 SDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 393 t~~~~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
...++++++... +.+..++.+.|.+.||.+.. + .++.+||+.+.. .+++|++++++.|+++++.
T Consensus 353 -~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~----~-----~~~~iRl~~~~~----~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 353 -MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLN----A-----GADVMRFAPSLV----VEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp -ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEE----S-----STTEEEECCCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred -cceEEEEEECCCchHHHHHHHHHHHHCCCEEEe----C-----CCCEEEEECCCC----CCHHHHHHHHHHHHHHHHH
Confidence 234566776431 12467788888889999853 2 156899987643 4589999999999988753
No 199
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.83 E-value=7.6e-19 Score=183.71 Aligned_cols=321 Identities=15% Similarity=0.039 Sum_probs=195.1
Q ss_pred CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC-CCCceeeecC-ChHHHHHHHHH---h
Q 010008 104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPL-SGSPANFEVYT---A 178 (520)
Q Consensus 104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~-~~~~~~V~~~-sGs~A~~~~l~---a 178 (520)
+.++.|++++...+.+. . .....|+ ..+...++ ++.++++++.+. + +|.++ +|++|+.+++. +
T Consensus 57 ~~~~~v~~a~~~~~~~~-~--~~~~~~~-~~~~~~~l----~~~la~~~~~~~~~----~v~~~~g~~~a~~~~~~~a~~ 124 (426)
T 1sff_A 57 HLHPKVVAAVEAQLKKL-S--HTCFQVL-AYEPYLEL----CEIMNQKVPGDFAK----KTLLVTTGSEAVENAVKIARA 124 (426)
T ss_dssp BTCHHHHHHHHHHTTTC-S--CCCTTTE-ECHHHHHH----HHHHHHHSSCSSCE----EEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-C--Ccccccc-CCHHHHHH----HHHHHHhCCccccc----EEEEeCchHHHHHHHHHHHHH
Confidence 36799999998877532 1 1111222 23333333 367888883232 3 33444 45599999887 6
Q ss_pred hCCCCCEEEEcCCCCCccccccccccccccccccc-------------eEEEEEcccCC--CCCCCCHHHHHHHhhh---
Q 010008 179 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVDYDMLEKTAIL--- 240 (520)
Q Consensus 179 ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-------------~~~~v~~~~d~--~~~~iD~d~le~~i~~--- 240 (520)
+.++| +|++.++.|.+..... +...|. .+..++++.+. .++.+|+++|+++++.
T Consensus 125 ~~~~~-~vi~~~p~y~~~~~~~-------~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~ 196 (426)
T 1sff_A 125 ATKRS-GTIAFSGAYHGRTHYT-------LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAA 196 (426)
T ss_dssp HHTCC-EEEEETTCCCCSSHHH-------HHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCC
T ss_pred hhCCC-eEEEECCCcCCCchHh-------hhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccC
Confidence 77887 8888888775432111 111111 12333332210 1235799999998873
Q ss_pred -cCCcEEEEcC-CCCCC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-C
Q 010008 241 -FRPKLIIAGA-SAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-G 309 (520)
Q Consensus 241 -~~pklIi~~~-s~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-G 309 (520)
.++++|++.. ++|.+ ..+ +++|.++|+++|++||+|++|. |+...+... .... ..|++ |++|++. |
T Consensus 197 ~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G 273 (426)
T 1sff_A 197 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGG 273 (426)
T ss_dssp GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTS
T ss_pred CCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCC
Confidence 3678888853 34445 667 9999999999999999999976 654333110 0111 35666 6679984 5
Q ss_pred CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CE
Q 010008 310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YK 387 (520)
Q Consensus 310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~ 387 (520)
.|.|++++++ ++.+.+.........+. +....+++..+|+.+... ++.+++.++++.+.+.|.+.+ ++
T Consensus 274 lriG~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~ 343 (426)
T 1sff_A 274 FPLAGVTGRA------EVMDAVAPGGLGGTYAG-NPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHP 343 (426)
T ss_dssp SCCEEEEEEH------HHHTTSCTTSBCCSSSS-CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CceEEEEEcH------HHHhhhccCCcCcCCCC-CHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6679999988 67666654222222233 334444555567655432 345677777888888886632 22
Q ss_pred ---EecCCCCCeeEEEEecC-------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHH
Q 010008 388 ---LVSGGSDNHLVLVDLRP-------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF 457 (520)
Q Consensus 388 ---v~~~gt~~~~~~vd~~~-------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~ 457 (520)
.+.+ ...++++++.. .+.+..++.+.|.+.||.+. ||.. .++++||+.+.. .+++|+
T Consensus 344 ~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~----~~~~---~~~~iRi~~~~~----~~~~~i 410 (426)
T 1sff_A 344 EIGDVRG--LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILL----SCGP---YYNVLRILVPLT----IEDAQI 410 (426)
T ss_dssp TEEEEEE--ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECE----EEST---TSCEEEECCCTT----CCHHHH
T ss_pred CeEEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEe----cCCC---CCCEEEEECCcc----CCHHHH
Confidence 2222 24567777742 12234567777878899985 3321 257899987633 358999
Q ss_pred HHHHHHHHHHHHH
Q 010008 458 VAIADFIHEGVEI 470 (520)
Q Consensus 458 ~~la~~i~~~l~~ 470 (520)
+++++.|.++++.
T Consensus 411 ~~~~~~l~~~l~~ 423 (426)
T 1sff_A 411 RQGLEIISQCFDE 423 (426)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 200
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.83 E-value=2.7e-20 Score=192.68 Aligned_cols=319 Identities=16% Similarity=0.176 Sum_probs=194.7
Q ss_pred ccceEecCC----C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CC--CCCCCceee
Q 010008 94 KSLELIASE----N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NL--DENKWGVNV 163 (520)
Q Consensus 94 ~~i~Liase----n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~--~~~~~~~~V 163 (520)
+.|+|..++ + ++++.|.+++...+.+....+|+.. .| ..+++ +.+++++ +. +++ +|
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g---~~~lr----~~la~~~~~~~~~~~----~v 92 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGL---SG---EPEFQ----KAMGELILGDGLKSE----TT 92 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCS---SC---CHHHH----HHHHHHHHGGGCCGG----GE
T ss_pred cccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCC---CC---cHHHH----HHHHHHHhCCCCCcc----cE
Confidence 467887765 2 3579999999887654222344321 11 23444 3344443 44 444 33
Q ss_pred e---cCChHHHHHHHHHhhC--CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHH
Q 010008 164 Q---PLSGSPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKT 237 (520)
Q Consensus 164 ~---~~sGs~A~~~~l~all--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~ 237 (520)
. +.+|++|+.+++.++. .|||+|++++|.|.++.. .+...|. +++.+++++ +++.+|+++++++
T Consensus 93 ~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~ 162 (394)
T 2ay1_A 93 ATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS--------IMNFMGL--PVQTYRYFDAETRGVDFEGMKAD 162 (394)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHHTC--CEEEEECEETTTTEECHHHHHHH
T ss_pred EEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCC--ceEEEecccccCCccCHHHHHHH
Confidence 3 4455599998887764 499999999988765421 2233454 455555532 3578999999999
Q ss_pred hhhc--CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccccc---ccC-CCCC--cc-cEEEecc
Q 010008 238 AILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS---VVA-DPFK--YC-DVVTTTT 303 (520)
Q Consensus 238 i~~~--~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~---~~~-~p~~--~a-Div~~S~ 303 (520)
+++. ++++++++.++||+ ..+ +++|.++|+++|+++|+|++|.. +...+ ..+ ..+. +. .+++.|+
T Consensus 163 l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 241 (394)
T 2ay1_A 163 LAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQG-FGDGLEEDAAGTRLIASRIPEVLIAASC 241 (394)
T ss_dssp HHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTT-SSSCHHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccc-cccCcccchHHHHHHhhcCCCEEEEEec
Confidence 8763 25667778888886 444 66889999999999999999653 32211 000 0011 22 3678899
Q ss_pred Cccc--CCCCceEEEe--eCCCcchhhH----HHhhcccCCCCCCCCChHHHHHHHHHHHHHh-----cCchhHHHHHHH
Q 010008 304 HKSL--RGPRGGMIFF--KKDPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKV 370 (520)
Q Consensus 304 hK~l--~GprgG~I~~--~~~~~~~~~l----~~~i~~~~~p~~~g~p~~~~iaala~al~~~-----~~~~~~~~~~~i 370 (520)
||++ +|.|.|++++ +++ ++ .+.+.........+.+.. ..++...+|+.. .....++..+++
T Consensus 242 sK~~~~~G~riG~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~-~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 315 (394)
T 2ay1_A 242 SKNFGIYRERTGCLLALCADA-----ATRELAQGAMAFLNRQTYSFPPFH-GAKIVSTVLTTPELRADWMAELEAVRSGM 315 (394)
T ss_dssp TTTTTCGGGCEEEEEEECSSH-----HHHHHHHHHHHHHHHTTTSSCCCH-HHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcCCccceEEEEeCCH-----HHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 9987 4777899998 221 33 222221111122222233 333333344421 012346677888
Q ss_pred HHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008 371 VSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA 446 (520)
Q Consensus 371 ~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~ 446 (520)
.++++.+.+.|.+.| +++..+. ...++|+++ +.+.+.+.|+++||.+. | ++||++..
T Consensus 316 ~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~~~~-----~~~~~~~~l~~~gi~v~----~---------~~Ris~~~ 376 (394)
T 2ay1_A 316 LRLREQLAGELRDLSGSDRFGFVAEH-RGMFSRLGA-----TPEQVKRIKEEFGIYMV----G---------DSRINIAG 376 (394)
T ss_dssp HHHHHHHHHHHHHHHTSSTTTHHHHC-CSSEEECCC-----CHHHHHHHHHHHCEECC----T---------TCEEEGGG
T ss_pred HHHHHHHHHHHHhcCCCCCeeEEcCC-ceEEEeeCC-----CHHHHHHHHHhCCEEec----C---------CCeEEeec
Confidence 888899999998753 6654432 234455443 34678888889999983 2 36998652
Q ss_pred ccccCCCHHHHHHHHHHHHHH
Q 010008 447 MTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 447 ~tt~g~~~~d~~~la~~i~~~ 467 (520)
.+++|++++++.|+++
T Consensus 377 -----~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 377 -----LNDNTIPILARAIIEV 392 (394)
T ss_dssp -----CCTTTHHHHHHHHHHH
T ss_pred -----CCHhhHHHHHHHHHHc
Confidence 3479999999988764
No 201
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.83 E-value=1.3e-18 Score=180.56 Aligned_cols=249 Identities=16% Similarity=0.120 Sum_probs=166.3
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 213 (520)
Q Consensus 134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~ 213 (520)
++..+++| +++++++|.+. .+..+||++|+..++.+++++||+|+++++.|++...... ......|.
T Consensus 58 ~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~----~~~~~~g~ 124 (389)
T 3acz_A 58 NPTVEQFE----EMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFT----HWLPRFGI 124 (389)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHH----HHHHHTTC
T ss_pred ChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC
Confidence 45555555 67888999872 4567899999999999999999999999998876432110 00123454
Q ss_pred eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008 214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 291 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~ 291 (520)
+++.++. .|++++++++++ ++++|++..++||+ ..|+++|+++|+++|+++++|++|..+... .
T Consensus 125 --~~~~v~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~-----~ 190 (389)
T 3acz_A 125 --EVDLIDT------SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL-----K 190 (389)
T ss_dssp --EEEEECT------TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-----C
T ss_pred --EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc-----C
Confidence 5555443 489999999987 89999999888876 789999999999999999999998765421 2
Q ss_pred CCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008 292 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 366 (520)
Q Consensus 292 p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~ 366 (520)
|+. ++|+++.|+||++.||. +|+++++++ ++.+++..... .+...+ .....+ ++..+. .+...
T Consensus 191 ~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~-----~~~~~l~~~~~~~g~~~~-~~~~~~----~~~~l~--~l~~r 258 (389)
T 3acz_A 191 PLELGADIALHSVSKYINGHGDVIGGVSSAKTA-----EDIATIKFYRKDAGSLMA-PMDAFL----CARGMK--TLPIR 258 (389)
T ss_dssp GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHHCCCCC-HHHHHH----HHHHHT--THHHH
T ss_pred ccccCCeEEEECChhhccCCCCceeEEEEECcH-----HHHHHHHHHHHhcCCCCC-HHHHHH----HHcCcc--HHHHH
Confidence 333 68999999999997664 499999872 34444443221 111111 121211 222221 23455
Q ss_pred HHHHHHHHHHHHHHHHHCC-CE-EecCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcC
Q 010008 367 QNKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNK 425 (520)
Q Consensus 367 ~~~i~~na~~l~~~L~~~G-~~-v~~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~ 425 (520)
.++..+|++.+.+.|.+.+ +. +..++ ....++.+.+. + .+.+.+.|++.||.+..
T Consensus 259 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~--~--~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 259 MQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK--S--FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--S--HHHHHHHHTTCSSSEEB
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC--C--HHHHHHHHHhCCCcEEC
Confidence 6777888999999998743 21 11111 01334555553 2 56788899999987754
No 202
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.82 E-value=9.1e-19 Score=183.45 Aligned_cols=326 Identities=15% Similarity=0.084 Sum_probs=192.1
Q ss_pred cceEecCC--CCC----hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCC
Q 010008 95 SLELIASE--NFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLS 167 (520)
Q Consensus 95 ~i~Liase--n~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~s 167 (520)
.|++.++. +++ +|.|++|+...+.... . +...+|. .+...+ .++++++++|++ ++ +|.+++
T Consensus 44 ~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~-~~~~~~~--~~~~~~----l~~~la~~~~~~~~~----~v~~~~ 111 (419)
T 2eo5_A 44 YLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-H-AAANDFY--NIPQLE----LAKKLVTYSPGNFQK----KVFFSN 111 (419)
T ss_dssp EEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-C-CSCSCSC--CHHHHH----HHHHHHHHSSCSSCE----EEEEES
T ss_pred EEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-c-ccccccC--CHHHHH----HHHHHHHhCCCCcCC----EEEEeC
Confidence 46665554 333 7999999988875431 1 1111221 222222 236788999987 54 344444
Q ss_pred -hHHHHHHHHHhhCC-CCCEEEEcCCCCCcccccccc------ccccccccccceEEEEEcccCCCCCC-----------
Q 010008 168 -GSPANFEVYTAILK-PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDESTGL----------- 228 (520)
Q Consensus 168 -Gs~A~~~~l~all~-pGD~Vl~~~~~~~ghls~g~~------~~~~~v~~~g~~~~~v~~~~d~~~~~----------- 228 (520)
|++|+..++.++.. +||+|++++|.+.+....... .++........ .++.++++ +.+.
T Consensus 112 gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~g~~~~~~~ 188 (419)
T 2eo5_A 112 SGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMP--GVIHVPYP-NPYRNPWHINGYENP 188 (419)
T ss_dssp SHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCT--TEEEECCC-CSSSCTTCCCTTTCH
T ss_pred chHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCC--CCEEECCC-ccccccccccccccc
Confidence 56999998887643 499999999877543210000 00000000011 22333333 2221
Q ss_pred -----CCHHHHH-HHhhh----cCCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-CC
Q 010008 229 -----VDYDMLE-KTAIL----FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD 291 (520)
Q Consensus 229 -----iD~d~le-~~i~~----~~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~ 291 (520)
+|+++|+ +++++ .++++|+++..+++ + ..+ +++|+++|+++|++||+|++|. |+...+.. ..
T Consensus 189 ~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~~g~~g~~~~~ 267 (419)
T 2eo5_A 189 SELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-GLGRTGKLFAI 267 (419)
T ss_dssp HHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGG
T ss_pred hhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCcchhhH
Confidence 4788999 88874 25678887755544 3 455 9999999999999999999975 43322211 00
Q ss_pred C-CC-cccEEEeccCcccC-C-CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008 292 P-FK-YCDVVTTTTHKSLR-G-PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 367 (520)
Q Consensus 292 p-~~-~aDiv~~S~hK~l~-G-prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~ 367 (520)
. +. ..|++ |++|++. | +|.|++++++ ++. .+ .....+..++ +...+++...+++... +..
T Consensus 268 ~~~~~~~d~~--t~sK~~~~G~~riG~~~~~~------~~~-~~-~~~~~~t~~~-n~~~~~aa~aal~~~~-----~~~ 331 (419)
T 2eo5_A 268 ENFNTVPDVI--TLAKALGGGIMPIGATIFRK------DLD-FK-PGMHSNTFGG-NALACAIGSKVIDIVK-----DLL 331 (419)
T ss_dssp GGGTCCCSEE--EECGGGGTTTSCCEEEEEEG------GGC-CC-------CCCC-CHHHHHHHHHHHHHHH-----HHH
T ss_pred HhcCCCCCEE--EecccccCCccceEEEEEch------Hhh-cC-CcccCCCCCC-CHHHHHHHHHHHHHHH-----HHH
Confidence 1 11 35766 5669985 5 7779999988 454 44 2112222222 3344445445666532 267
Q ss_pred HHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCc
Q 010008 368 NKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM 447 (520)
Q Consensus 368 ~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~ 447 (520)
+++.++++.|.+.|.+. +..+.+ ...++++++.+...... +.+.|.+.||.+.. + ..+.+||+.+..
T Consensus 332 ~~~~~~~~~l~~~L~~~-~~~~~~--~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~----~-----~~~~lRis~~~~ 398 (419)
T 2eo5_A 332 PHVNEIGKIFAEELQGL-ADDVRG--IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLP----A-----GRSAIRVIPPLV 398 (419)
T ss_dssp HHHHHHHHHHHHHHTTS-SSEEEE--ETTEEEEECSCHHHHHH-HHHHHHHTTEECEE----E-----TTTEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHh-hhheEe--eeEEEEEEEecCccHHH-HHHHHHHCCCEEec----C-----CCCEEEEECCCC
Confidence 78888899999999765 322222 23455677632111234 67777789999853 2 146899976644
Q ss_pred cccCCCHHHHHHHHHHHHHHHH
Q 010008 448 TTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 448 tt~g~~~~d~~~la~~i~~~l~ 469 (520)
.+++|++++++.|+++++
T Consensus 399 ----~t~e~i~~~l~~l~~~l~ 416 (419)
T 2eo5_A 399 ----ISEEEAKQGLDILKKVIK 416 (419)
T ss_dssp ----CCHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHH
Confidence 358999999999998875
No 203
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.82 E-value=4.9e-18 Score=175.99 Aligned_cols=323 Identities=14% Similarity=0.113 Sum_probs=192.2
Q ss_pred cceEecC--CCC---ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 95 SLELIAS--ENF---TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 95 ~i~Lias--en~---~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
.|++..+ .++ .+|.|.+++...+.+. ..++. +| ..+...++ ++++++++|.+. .+..++|+
T Consensus 38 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~--~~--~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~ 103 (395)
T 3nx3_A 38 YLDFSSGIGVCALGYNHAKFNAKIKAQVDKL-LHTSN--LY--YNENIAAA----AKNLAKASALER-----VFFTNSGT 103 (395)
T ss_dssp EEESSHHHHTCTTCBSCHHHHHHHHHHHTTC-SCCCT--TS--BCHHHHHH----HHHHHHHHTCSE-----EEEESSHH
T ss_pred EEECCCcHHhccCCCCCHHHHHHHHHHHHhc-ccccc--cc--CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHH
Confidence 4555543 332 4799999998877532 22221 12 23333333 367888888431 24456777
Q ss_pred HHHHHHHHhhC-------CCCCEEEEcCCCCCcccccccccc-----ccccccccceEEEEEcccCCCCCCCCHHHHHHH
Q 010008 170 PANFEVYTAIL-------KPHDRIMGLDLPHGGHLSHGFMTP-----KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKT 237 (520)
Q Consensus 170 ~A~~~~l~all-------~pGD~Vl~~~~~~~ghls~g~~~~-----~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~ 237 (520)
+|+..++.++. .+||+|++.++.|.|......... .......+. +...++ ..|+++|+++
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~d~~~l~~~ 175 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLIS--GVKFAK------YNDISSVEKL 175 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCS--CEEEEC------TTCHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCC--CcEEeC------CCCHHHHHHh
Confidence 99999888764 468999999988754321110000 000000011 122222 1389999999
Q ss_pred hhhcCCcEEEEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCccc-
Q 010008 238 AILFRPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL- 307 (520)
Q Consensus 238 i~~~~pklIi~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l- 307 (520)
+++ ++++|++..+++ ++ ..+ +++|+++|+++|++||+|++|. |+...+.. . .... ..|+++ ++|++
T Consensus 176 l~~-~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~d~~t--~sK~~~ 251 (395)
T 3nx3_A 176 VNE-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC-GMGRSGKFFAYEHAQILPDIMT--SAKALG 251 (395)
T ss_dssp CCT-TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--ECGGGT
T ss_pred ccC-CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCcCCcchhHHhcCCCCCEEE--eccccc
Confidence 976 788888875443 33 334 8999999999999999999964 33222210 0 0111 356665 45987
Q ss_pred CCCCceEEEeeCCCcchhhH-HHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH---
Q 010008 308 RGPRGGMIFFKKDPVLGVEL-ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--- 383 (520)
Q Consensus 308 ~GprgG~I~~~~~~~~~~~l-~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--- 383 (520)
.|+|.|++++++ ++ .+.+......+.++++.....++ ..+++....+ ++.+++.++.+.+.+.|.+
T Consensus 252 ~G~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~aa-~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~ 321 (395)
T 3nx3_A 252 CGLSVGAFVINQ------KVASNSLEAGDHGSTYGGNPLVCAGV-NAVFEIFKEE---KILENVNKLTPYLEQSLDELIN 321 (395)
T ss_dssp TTSCCEEEEECH------HHHHHHSCTTCCSSCBSCCHHHHHHH-HHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEch------hhhhhhcCCcccCCCCCCCHHHHHHH-HHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999988 66 66665543333333333333333 3466654322 3345555556666666544
Q ss_pred -CC-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008 384 -LG-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA 461 (520)
Q Consensus 384 -~G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la 461 (520)
.. +..+.+ ...++++++.. ..+...+.+.|.+.||.+.. + .++.+||+.+..+ +++|++++.
T Consensus 322 ~~~~~~~~~~--~g~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~----~-----~~~~iRi~~~~~~----t~e~i~~~l 385 (395)
T 3nx3_A 322 EFDFCKKRKG--LGFMQGLSLDK-SVKVAKVIQKCQENALLLIS----C-----GENDLRFLPPLIL----QKEHIDEMS 385 (395)
T ss_dssp HCTTEEEEEE--ETTEEEEEECT-TSCHHHHHHHHHHTTEECEE----E-----TTTEEEECCCTTC----CHHHHHHHH
T ss_pred hCCCeEEEEe--EEEEEEEEeCC-cchHHHHHHHHHHCCCEEec----C-----CCCEEEEECCCCC----CHHHHHHHH
Confidence 22 322222 23456777653 23567788888899999853 2 2578999866543 489999999
Q ss_pred HHHHHHHH
Q 010008 462 DFIHEGVE 469 (520)
Q Consensus 462 ~~i~~~l~ 469 (520)
+.|+++++
T Consensus 386 ~~l~~~l~ 393 (395)
T 3nx3_A 386 EKLRKALK 393 (395)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 204
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.81 E-value=6.4e-18 Score=177.34 Aligned_cols=326 Identities=12% Similarity=0.044 Sum_probs=180.0
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 180 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---- 180 (520)
.+|.|.+++...+.+. ..+++. +| ..+... ..+++++++++.+.+++ +..++|++|+..++.+++
T Consensus 46 ~~p~v~~a~~~~~~~~-~~~~~~-~~--~~~~~~----~l~~~la~~~~~~~~~v---~~~~gg~ea~~~al~~~~~~~~ 114 (430)
T 3i4j_A 46 GRAEVGERMAAQAARL-PFVHGS-QF--SSDVLE----EYAGRLARFVGLPTFRF---WAVSGGSEATESAVKLARQYHV 114 (430)
T ss_dssp CCHHHHHHHHHHHHHC-CCCCTT-TC--EEHHHH----HHHHHHHHHTTCTTCEE---EEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cccccc-cc--CCHHHH----HHHHHHHHhCCCCCCEE---EEeCcHHHHHHHHHHHHHHHHH
Confidence 4889999988877542 211111 11 122222 33468889998876522 334556799999998876
Q ss_pred ----CCCCEEEEcCCCCCccccccccccccccccccce-----E-------EEEEcccCCCC---CCCCHHHHHHHhhh-
Q 010008 181 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-------ESMPYRLDEST---GLVDYDMLEKTAIL- 240 (520)
Q Consensus 181 ----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~-------~~v~~~~d~~~---~~iD~d~le~~i~~- 240 (520)
.++|+|++.++.|.|..... ....+.. + ....++.+ +. +..|+++|+++++.
T Consensus 115 ~~g~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~l~~~ 186 (430)
T 3i4j_A 115 ERGEPGRFKVITRVPSYHGASLGS-------LAASGMGARRELYTPLMRPEAWPKLPKP-DPARNGAEDAEGLRALLERE 186 (430)
T ss_dssp HTTCTTCCEEEEETTC--------------------------------CGGGSCEECCC-CTTSCHHHHHTHHHHHHHHH
T ss_pred hcCCCCCcEEEEEeCCcCCCCccc-------ccccCccccccccCCcCCCCCceEcCCC-cccchhhHHHHHHHHHHHhc
Confidence 45789999998764432111 1111110 0 00011111 11 22466899998874
Q ss_pred --cCCcEEEEcCCCC-CC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCC-C-cccEEEeccCccc
Q 010008 241 --FRPKLIIAGASAY-PR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-K-YCDVVTTTTHKSL 307 (520)
Q Consensus 241 --~~pklIi~~~s~~-p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~-~-~aDiv~~S~hK~l 307 (520)
.++++|+++.+++ ++ ..+ +++|+++|+++|++||+|++|. |+...+... ..+ . ..|+++ ++|++
T Consensus 187 ~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~~~~g~~~~~~~~~~~~~di~t--~sK~l 263 (430)
T 3i4j_A 187 GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-GMGRCGSPLALSRWSGVTPDIAV--LGKGL 263 (430)
T ss_dssp CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTTCCCSEEE--ECGGG
T ss_pred CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhhhhcCCCCcEEE--Ecccc
Confidence 3556777765444 32 344 8999999999999999999964 443222110 001 1 246665 55998
Q ss_pred C-C-CCceEEEeeCCCcchhhHHHhhccc----CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008 308 R-G-PRGGMIFFKKDPVLGVELESAINNA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL 381 (520)
Q Consensus 308 ~-G-prgG~I~~~~~~~~~~~l~~~i~~~----~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L 381 (520)
. | +|.|++++++ ++.+.+... ......+++...+ ++..++|+....+ ++.+++.++.+.+.+.|
T Consensus 264 ~~G~~r~G~~~~~~------~i~~~~~~~~~~~~~~~t~~~~~~~~-aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l 333 (430)
T 3i4j_A 264 AAGYAPLAGLLAAP------QVYETVMGGSGAFMHGFTYAGHPVSV-AAGLSVLDIVERE---DLTGAAKERGAQLLAGL 333 (430)
T ss_dssp TTTSSCCEEEEECH------HHHHHHHHTTCBCCCCCTTTTCHHHH-HHHHHHHHHHHHT---THHHHHHHHHHHHHHHH
T ss_pred cCCccccEEEEECH------HHHHHHhccCCcccccCCCCCCHHHH-HHHHHHHHHHHcc---cHHHHHHHHHHHHHHHH
Confidence 4 5 7889999987 677766542 1222223333333 3333466654322 34555566666666666
Q ss_pred HH-----CCCEEecCCCCCeeEEEEecCC--------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008 382 VE-----LGYKLVSGGSDNHLVLVDLRPM--------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 448 (520)
Q Consensus 382 ~~-----~G~~v~~~gt~~~~~~vd~~~~--------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t 448 (520)
.+ .++..+.+ ...++++++... .....++.+.|.+.||.+.....+ ......+.+||+.+...
T Consensus 334 ~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~~~~~~iRi~~~~~~ 409 (430)
T 3i4j_A 334 QALQARFPQMMQVRG--TGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGA--EPNGRGDHLLLGPPLSI 409 (430)
T ss_dssp HHHHHHCTTEEEEEE--ETTEEEEEEC------------CHHHHHHHHHHTTEECC-------------CEEEECCCTTC
T ss_pred HHHHHhCCCeEEEEE--EEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccc--cCCCCCCEEEEECCCCC
Confidence 54 23443332 123556665321 111256778888999998542111 11123567999876443
Q ss_pred ccCCCHHHHHHHHHHHHHHHHH
Q 010008 449 TRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 449 t~g~~~~d~~~la~~i~~~l~~ 470 (520)
+++|++++++.|+++++.
T Consensus 410 ----t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 410 ----TAAEVDGLLALLAGALED 427 (430)
T ss_dssp ----CHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHH
Confidence 489999999999998763
No 205
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.80 E-value=2.3e-18 Score=179.70 Aligned_cols=215 Identities=19% Similarity=0.150 Sum_probs=148.0
Q ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccc-cccc
Q 010008 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGT 211 (520)
Q Consensus 133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~-v~~~ 211 (520)
+++..+++| +++++++|.+. .+.++||++|+.+ +.++++|||+|++.++.|++.+.... .. ....
T Consensus 65 ~~p~~~~l~----~~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~~ 130 (400)
T 3nmy_A 65 HNPTRFAYE----RCVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFE----RVRRRTA 130 (400)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHH----HTHHHHH
T ss_pred CCHHHHHHH----HHHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHH----HhhHhhc
Confidence 456667776 67888999863 4567899999987 67889999999999998875432110 00 1112
Q ss_pred cceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008 212 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 289 (520)
Q Consensus 212 g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~ 289 (520)
|. +++.++.+ |++++++++++ ++++|++..++||+ ..|+++|+++|+++|+++|+|++|..+...
T Consensus 131 g~--~~~~v~~~------d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~---- 197 (400)
T 3nmy_A 131 GL--DFSFVDLT------DPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ---- 197 (400)
T ss_dssp CC--EEEEECTT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC----
T ss_pred Ce--EEEEECCC------CHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 43 55555432 89999999987 89999999888886 779999999999999999999998755432
Q ss_pred CCCCC-cccEEEeccCcccCCC---Cce-EEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchh
Q 010008 290 ADPFK-YCDVVTTTTHKSLRGP---RGG-MIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEF 363 (520)
Q Consensus 290 ~~p~~-~aDiv~~S~hK~l~Gp---rgG-~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~ 363 (520)
.|+. ++|+++.|+||++.|+ .+| +++++++ ++.+++..... .+...+ . .++ +.+++.+ ..+
T Consensus 198 -~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~-----~~~~~l~~~~~~~g~~~~--~--~~a-~~~l~~l--~~l 264 (400)
T 3nmy_A 198 -RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNA-----ELAEQMAFLQNSIGGVQG--P--FDS-FLALRGL--KTL 264 (400)
T ss_dssp -CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCH-----HHHHHHHHHHHHHCCBCC--H--HHH-HHHHHHH--TTH
T ss_pred -ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCH-----HHHHHHHHHHHhcCCCCC--H--HHH-HHHHHhH--hHH
Confidence 2333 6899999999999876 467 6666553 55555543211 111111 1 111 1223332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCE
Q 010008 364 KVYQNKVVSNCRALASRLVEL-GYK 387 (520)
Q Consensus 364 ~~~~~~i~~na~~l~~~L~~~-G~~ 387 (520)
....++..+|++.+.+.|++. .+.
T Consensus 265 ~~r~~~~~~~a~~l~~~L~~~p~v~ 289 (400)
T 3nmy_A 265 PLRMRAHCENALALAQWLETHPAIE 289 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEe
Confidence 566788899999999999873 443
No 206
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.80 E-value=1.8e-18 Score=181.61 Aligned_cols=157 Identities=20% Similarity=0.170 Sum_probs=118.2
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 213 (520)
Q Consensus 134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~ 213 (520)
++..+++| +++++++|.+. .|.++||++|+..++.+++++||+|++.++.|++...... ......|.
T Consensus 57 ~~~~~~l~----~~la~~~g~~~-----~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~ 123 (421)
T 2ctz_A 57 NPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFK----VTLKRLGI 123 (421)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHH----THHHHTTC
T ss_pred ChHHHHHH----HHHHHHhCCCc-----eEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC
Confidence 34455555 67889999873 3567899999999999999999999999998866532110 00122344
Q ss_pred eEEEEEc-ccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechh-hccccccccc
Q 010008 214 YFESMPY-RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAH-ISGLVAASVV 289 (520)
Q Consensus 214 ~~~~v~~-~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah-~~gli~~~~~ 289 (520)
+++.+ +.+ |++++++++++ ++++|++..++||+ ..|+++|+++|+++|+++++|++| ..|..
T Consensus 124 --~~~~~~~~~------d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~----- 189 (421)
T 2ctz_A 124 --EVRFTSREE------RPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL----- 189 (421)
T ss_dssp --EEEECCTTC------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-----
T ss_pred --EEEEECCCC------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-----
Confidence 66665 432 89999999987 89999999888875 789999999999999999999999 76632
Q ss_pred CCCCC-cccEEEeccCcccCCCC--ceEEEe
Q 010008 290 ADPFK-YCDVVTTTTHKSLRGPR--GGMIFF 317 (520)
Q Consensus 290 ~~p~~-~aDiv~~S~hK~l~Gpr--gG~I~~ 317 (520)
..++. ++|++++|+||++.||. .|++++
T Consensus 190 ~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~ 220 (421)
T 2ctz_A 190 LRPLAWGAALVTHSLTKWVGGHGAVIAGAIV 220 (421)
T ss_dssp CCGGGGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred CCccccCCeEEEECCcccccCCCCcEEEEEE
Confidence 12333 68999999999997754 244444
No 207
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.79 E-value=1.1e-17 Score=175.97 Aligned_cols=330 Identities=15% Similarity=0.097 Sum_probs=192.5
Q ss_pred cceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC-CCCceeeecCCh
Q 010008 95 SLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSG 168 (520)
Q Consensus 95 ~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~-~~~~~~V~~~sG 168 (520)
.|++..+.. ..+|.|.+++...+... . .|... .+..+... ..+++++++++... ++ .+..++|
T Consensus 45 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~-~~~~~--~~~~~~~~----~l~~~la~~~~~~~~~~---v~~~~gg 113 (439)
T 3dxv_A 45 LIDLSGAWGAASLGYGHPAIVAAVSAAAANP-A-GATIL--SASNAPAV----TLAERLLASFPGEGTHK---IWFGHSG 113 (439)
T ss_dssp EEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-S-CSCSS--SSEEHHHH----HHHHHHHHTTTCTTTEE---EEEESSH
T ss_pred EEECCCchhhccCCCCCHHHHHHHHHHHHhc-c-Ccccc--ccCCHHHH----HHHHHHHHhCCCCCCCE---EEEeCCH
Confidence 466655443 25899999998877543 1 12111 11223223 34478888886554 32 2445677
Q ss_pred HHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccce---E---------EEEEcccCCCCCCC-----
Q 010008 169 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---F---------ESMPYRLDESTGLV----- 229 (520)
Q Consensus 169 s~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~---~---------~~v~~~~d~~~~~i----- 229 (520)
++|+..++.++ ..++++|++.++.+.|..... ....+.. + .+..++.+ ..+..
T Consensus 114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 185 (439)
T 3dxv_A 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGS-------MAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDA 185 (439)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHH-------HCC-------------CEEEECCCCSSS-CBTTBTTSHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHH-------HhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHH
Confidence 79999998875 346788888887664332111 1111110 0 01122221 11112
Q ss_pred CHHHHHHHhh---hcCCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-ccc
Q 010008 230 DYDMLEKTAI---LFRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCD 297 (520)
Q Consensus 230 D~d~le~~i~---~~~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aD 297 (520)
|+++|+++++ ..++++|++..++++ + ..+ +++|+++|++||++||+|++|. |+...+. .. ..+. ..|
T Consensus 186 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~d 264 (439)
T 3dxv_A 186 ILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPD 264 (439)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCC
Confidence 7899999984 336788888765443 3 555 9999999999999999999975 5432221 11 0011 357
Q ss_pred EEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008 298 VVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 376 (520)
Q Consensus 298 iv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~ 376 (520)
++ |++|++ .|+|.|++++++ ++.+.+......... ++.. .+++...+++.... +++.+++.++.+.
T Consensus 265 i~--s~sK~~~~G~riG~~~~~~------~~~~~~~~~~~~~t~-~~~~-~~~aa~aal~~~~~---~~~~~~~~~~~~~ 331 (439)
T 3dxv_A 265 IL--VLGKGLGGGLPLSAVIAPA------EILDCASAFAMQTLH-GNPI-SAAAGLAVLETIDR---DDLPAMAERKGRL 331 (439)
T ss_dssp EE--EECGGGGTTSCCEEEEEEH------HHHTSCSSSSCCTTT-TCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHH
T ss_pred EE--EEcchhcCCcceEEEEECH------HHHhhhcCCCcCCCc-ccHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHH
Confidence 76 667988 467889999988 677766654333333 3333 33333345665432 2345666666777
Q ss_pred HHHHHHHC----C-CEEecCCCCCeeEEEEec-------CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008 377 LASRLVEL----G-YKLVSGGSDNHLVLVDLR-------PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444 (520)
Q Consensus 377 l~~~L~~~----G-~~v~~~gt~~~~~~vd~~-------~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~ 444 (520)
+.+.|.+. + +..+.+ ...++++++. +.+.+...+.+.|.+.||.+.. +. ..++.+||+.
T Consensus 332 ~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~---~~~~~iRi~~ 402 (439)
T 3dxv_A 332 LRDGLSELAKRHPLIGDIRG--RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYY----VG---MNGNVLEFTP 402 (439)
T ss_dssp HHHHHHHHHHHCTTEEEEEE--ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEE----ES---TTSCEEEECC
T ss_pred HHHHHHHHHHhCCCeEEEEE--EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEee----cC---CCCCEEEEEC
Confidence 77776552 2 222222 2345555552 1112245567777778999843 32 1247899986
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 445 PAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 445 ~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+.. .+++|++++.+.|+++++.
T Consensus 403 ~~~----~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 403 PLT----ITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp CTT----CCHHHHHHHHHHHHHHHHT
T ss_pred CCC----CCHHHHHHHHHHHHHHHHH
Confidence 644 3589999999999998864
No 208
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.79 E-value=2.1e-17 Score=173.51 Aligned_cols=326 Identities=14% Similarity=0.081 Sum_probs=189.2
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--CC
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 182 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~p 182 (520)
.+|.|.+++...+.+. .. ....|. .+...++ +++++++++.+.+++ +..++|++|+..++.++. ..
T Consensus 60 ~~p~v~~a~~~~~~~~-~~--~~~~~~--~~~~~~l----~~~la~~~~~~~~~v---~~~~gg~ea~~~a~~~~~~~~~ 127 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKL-DH--LFSEML--SRPVVDL----ATRLANITPPGLDRA---LLLSTGAESNEAAIRMAKLVTG 127 (433)
T ss_dssp TCHHHHHHHHHHHHHC-CC--CCTTCC--CHHHHHH----HHHHHHHSCTTCCEE---EEESCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC-cc--cccccC--CHHHHHH----HHHHHHhCCCCcCEE---EEeCchHHHHHHHHHHHHHhhC
Confidence 4799999998877542 11 111121 1222233 357888998876521 334567799999887653 23
Q ss_pred CCEEEEcCCCCCcccccccc----ccccc--cccccceEEEEEcccCCC---------CCCCCHHHHHHHhhh---cCCc
Q 010008 183 HDRIMGLDLPHGGHLSHGFM----TPKRR--VSGTSIYFESMPYRLDES---------TGLVDYDMLEKTAIL---FRPK 244 (520)
Q Consensus 183 GD~Vl~~~~~~~ghls~g~~----~~~~~--v~~~g~~~~~v~~~~d~~---------~~~iD~d~le~~i~~---~~pk 244 (520)
+|+|++.++.|.|....... ..... ....| +..++++.... .+.+|+++|++++++ .+++
T Consensus 128 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 205 (433)
T 1zod_A 128 KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 205 (433)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEE
T ss_pred CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCC--ceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeE
Confidence 58999999876443210000 00000 00112 24444332100 012479999999874 3667
Q ss_pred EEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCccc-CCCCce
Q 010008 245 LIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSL-RGPRGG 313 (520)
Q Consensus 245 lIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l-~GprgG 313 (520)
+|+++..+++ + ..+ +++|+++|+++|++||+|++|. |+...+.. ..+ . ..|++ |++|++ .|.|.|
T Consensus 206 ~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~g~~g~~-~~~~~~~~~~di~--s~sK~~~~G~~ig 281 (433)
T 1zod_A 206 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTM-FACQRDGVTPDIL--TLSKTLGAGLPLA 281 (433)
T ss_dssp EEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECHHHHTTSSCE
T ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCchH-hHHhhcCCCCCEE--EecccccCCCCee
Confidence 8888655444 3 344 9999999999999999999975 43222210 011 1 35665 566988 457789
Q ss_pred EEEeeCCCcchhhHHHhhcccCCC--CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----C-C
Q 010008 314 MIFFKKDPVLGVELESAINNAVFP--GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----G-Y 386 (520)
Q Consensus 314 ~I~~~~~~~~~~~l~~~i~~~~~p--~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G-~ 386 (520)
++++++ ++.+.+....+. +..+++.. ..++..++++.+.+. ++.+++.++++.+.+.|++. + +
T Consensus 282 ~~~~~~------~~~~~~~~~~~~~~~t~~~~~~-~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~ 351 (433)
T 1zod_A 282 AIVTSA------AIEERAHELGYLFYTTHVSDPL-PAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMERFDCI 351 (433)
T ss_dssp EEEECH------HHHHHHHHTTCCCCCTTTTCHH-HHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred EEEEhH------HHHHhhccCCCCCCCCCCcCHH-HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 999987 676666542211 22333333 334444467654432 34566777788888877652 2 2
Q ss_pred EEecCCCCCeeEEEEecCC-------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008 387 KLVSGGSDNHLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA 459 (520)
Q Consensus 387 ~v~~~gt~~~~~~vd~~~~-------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~ 459 (520)
..+.+ ...++++++... ..+...+.+.|.+.||.+.. |.... .++.+||+.+.. .+++|+++
T Consensus 352 ~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~~~~-~~~~lRi~~~~~----~t~~~i~~ 420 (433)
T 1zod_A 352 GDVRG--RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNI----VQLPG-MGGVFRIAPPLT----VSEDEIDL 420 (433)
T ss_dssp EEEEE--ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCE----ECCTT-SCCEEEECCCTT----CCHHHHHH
T ss_pred EEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEec----cCCCC-CCCEEEEECCcC----CCHHHHHH
Confidence 22222 234556666421 12245677777789999843 32111 247899986643 35899999
Q ss_pred HHHHHHHHHH
Q 010008 460 IADFIHEGVE 469 (520)
Q Consensus 460 la~~i~~~l~ 469 (520)
+++.|+++++
T Consensus 421 ~l~~l~~~l~ 430 (433)
T 1zod_A 421 GLSLLGQAIE 430 (433)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 209
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.79 E-value=8.6e-18 Score=177.46 Aligned_cols=317 Identities=16% Similarity=0.060 Sum_probs=192.1
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC--
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~-- 181 (520)
.++.|.+|+...+.+.. + .++ ....+...+ .+++++++++.+.++ .+..++|++|+.+++.++..
T Consensus 67 ~~~~v~~a~~~~~~~~~---~--~~~~~~~~~~~~~----l~~~la~~~~~~~~~---v~~~~ggsea~~~al~~~~~~~ 134 (449)
T 3a8u_X 67 TRKEIQEAVAKQLSTLD---Y--SPGFQYGHPLSFQ----LAEKITDLTPGNLNH---VFFTDSGSECALTAVKMVRAYW 134 (449)
T ss_dssp SCHHHHHHHHHHTTTCS---C--CCSSSCCCHHHHH----HHHHHHTTSSTTEEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC---C--ccccccCCHHHHH----HHHHHHHhCCCCCCE---EEEcCcHHHHHHHHHHHHHHHH
Confidence 47999999988875421 1 112 111222333 336788888776542 23345677999999887753
Q ss_pred ------CCCEEEEcCCCCCcccccccccccccccccc------------ceEEEEEcccCCC-C-CCCC--------HHH
Q 010008 182 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES-T-GLVD--------YDM 233 (520)
Q Consensus 182 ------pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g------------~~~~~v~~~~d~~-~-~~iD--------~d~ 233 (520)
+||+|++.++.|.+..... +...| ..+..++++.... . ..+| +++
T Consensus 135 ~~~g~~~~~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~ 207 (449)
T 3a8u_X 135 RLKGQATKTKMIGRARGYHGVNIAG-------TSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207 (449)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHH-------HHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCChhh-------hhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHH
Confidence 7899999998775432111 11111 1124444332100 0 1246 999
Q ss_pred HHHHhhh---cCCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhh-ccccccccc-C-CCCC-cccEEE
Q 010008 234 LEKTAIL---FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVV-A-DPFK-YCDVVT 300 (520)
Q Consensus 234 le~~i~~---~~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~-~gli~~~~~-~-~p~~-~aDiv~ 300 (520)
|+++++. .++++|+++..+++ + ..+ +++|+++|+++|++||+|++|. .|.. +.. . ..+. ..|++
T Consensus 208 le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~--g~~~~~~~~~~~~di~- 284 (449)
T 3a8u_X 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT--GSMFGADSFGVTPDLM- 284 (449)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT--SSSSHHHHHTCCCSEE-
T ss_pred HHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc--CcchhhhhcCCCCCEE-
Confidence 9999874 25678887754333 3 577 9999999999999999999974 3321 210 0 0001 35777
Q ss_pred eccCcccCC--CCceEEEeeCCCcchhhHHHhhccc---------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHH
Q 010008 301 TTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA---------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 369 (520)
Q Consensus 301 ~S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~---------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~ 369 (520)
|++|+|.| .|.|++++++ ++.+.+... ...+..++ +...+++...+++.+... ++.++
T Consensus 285 -s~sK~l~~G~~~~G~~~~~~------~~~~~l~~~~~~~~~~~~~~~~t~~~-~~~~~aa~~aal~~~~~~---~~~~~ 353 (449)
T 3a8u_X 285 -CIAKQVTNGAIPMGAVIAST------EIYQTFMNQPTPEYAVEFPHGYTYSA-HPVACAAGLAALCLLQKE---NLVQS 353 (449)
T ss_dssp -EECGGGGTTSSCCEEEEEEH------HHHHHHHTCSSCTTSCSSCCCCTTTT-CHHHHHHHHHHHHHHHHT---THHHH
T ss_pred -EEcccccCCCCceEEEEECH------HHHHHhhccCcccccccccccCCCcc-cHHHHHHHHHHHHHHHhc---CHHHH
Confidence 55699965 6789999987 666666442 11112222 334444445567655432 35677
Q ss_pred HHHHHHHHHHHHHHCC-CEEec--CCCCCeeEEEEecCCCC----CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEE
Q 010008 370 VVSNCRALASRLVELG-YKLVS--GGSDNHLVLVDLRPMGI----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRI 442 (520)
Q Consensus 370 i~~na~~l~~~L~~~G-~~v~~--~gt~~~~~~vd~~~~g~----~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRi 442 (520)
+.++.+.+.+.|.+.+ ++++. .+ ...++++++..... +...+.+.|.+.||.+.. + .+.+||
T Consensus 354 ~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~------g~~iRi 422 (449)
T 3a8u_X 354 VAEVAPHFEKALHGIKGAKNVIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRF----G------GDTLQF 422 (449)
T ss_dssp HHHHHHHHHHHHHTTTTSTTEEEEEE-ETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEE----E------TTEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEee-eEEEEEEEEecCcccccccHHHHHHHHHHCCcEEec----C------CCEEEE
Confidence 7788888888887632 33221 11 23567777753211 122577777788999853 2 168999
Q ss_pred ccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 443 GSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 443 g~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+.+.. .+++|++++++.|+++++
T Consensus 423 s~~~~----~t~~~i~~~l~~l~~~l~ 445 (449)
T 3a8u_X 423 GPTFN----SKPQDLDRLFDAVGEVLN 445 (449)
T ss_dssp CCCTT----CCHHHHHHHHHHHHHHHH
T ss_pred ECCCc----CCHHHHHHHHHHHHHHHH
Confidence 97643 458999999999998875
No 210
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.79 E-value=1.8e-16 Score=167.45 Aligned_cols=330 Identities=14% Similarity=0.055 Sum_probs=188.4
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 180 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---- 180 (520)
.+|.|.+|+...+.... . .+. ....+...+ .+++++++++.+.+ .+..++|++|+..++.++.
T Consensus 66 ~~p~v~~A~~~~~~~~~-~-~~~---~~~~~~~~~----la~~l~~~~~~~~~----v~~~~ggseA~~~al~~~~~~~~ 132 (452)
T 3n5m_A 66 GRKELAEAAYKQLQTLS-Y-FPM---SQSHEPAIK----LAEKLNEWLGGEYV----IFFSNSGSEANETAFKIARQYYA 132 (452)
T ss_dssp CCHHHHHHHHHHHTTCC-C-CCT---TSEEHHHHH----HHHHHHHHHTSCEE----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-C-ccc---ccCCHHHHH----HHHHHHHhCCCCce----EEEeCchHHHHHHHHHHHHHHHH
Confidence 47999999988775421 1 111 112232232 34678888887653 2345677899999998876
Q ss_pred -C---CCCEEEEcCCCCCcccccccccccccc-----ccccceEEEEEcccCCCCCCCC---------HHHHHHHhh---
Q 010008 181 -K---PHDRIMGLDLPHGGHLSHGFMTPKRRV-----SGTSIYFESMPYRLDESTGLVD---------YDMLEKTAI--- 239 (520)
Q Consensus 181 -~---pGD~Vl~~~~~~~ghls~g~~~~~~~v-----~~~g~~~~~v~~~~d~~~~~iD---------~d~le~~i~--- 239 (520)
+ ++|+|++.++.|.|............. .-....+..++.+.......-| +++|+++++
T Consensus 133 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 212 (452)
T 3n5m_A 133 QKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL 212 (452)
T ss_dssp TTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred hcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence 5 889999999887543210000000000 0000011222211100000112 899999987
Q ss_pred hcCCcEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-CC-CCC-cccEEEeccCccc-CC
Q 010008 240 LFRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSL-RG 309 (520)
Q Consensus 240 ~~~pklIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~-p~~-~aDiv~~S~hK~l-~G 309 (520)
..++++|+++.+ +|.+ ..+ +++|+++|++||++||+|++|. |+...+.. .. ... ..|+++ ++|++ .|
T Consensus 213 ~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G 289 (452)
T 3n5m_A 213 SETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVIC-GFGRTGKAFGFMNYDVKPDIIT--MAKGITSA 289 (452)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEE--ECGGGGTT
T ss_pred CCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcccccchhhhcCCCCCEEe--ecccccCC
Confidence 236788888866 4443 454 9999999999999999999964 43322211 00 011 356765 55987 46
Q ss_pred -CCceEEEeeCCCcchhhHHHhhcc----cC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 010008 310 -PRGGMIFFKKDPVLGVELESAINN----AV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV 382 (520)
Q Consensus 310 -prgG~I~~~~~~~~~~~l~~~i~~----~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~ 382 (520)
+|.|++++++ ++.+.+.. .. ..+..+++.....+++ ++|+.+..+ ++.+++.++.+++.+.|.
T Consensus 290 ~~~ig~~~~~~------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~---~~~~~~~~~~~~l~~~L~ 359 (452)
T 3n5m_A 290 YLPLSATAVKR------EIYEAFKGKGEYEFFRHINTFGGNPAACALAL-KNLEIIENE---NLIERSAQMGSLLLEQLK 359 (452)
T ss_dssp SSCCEEEEEEH------HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHH-HHHHHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEECH------HHHHHHhhccCCCCccccCCCCCCHHHHHHHH-HHHHHHHhc---cHHHHHHHHHHHHHHHHH
Confidence 6779999988 77777643 11 1122333333333433 466654332 345666667777777776
Q ss_pred HC--C---CEEecCCCCCeeEEEEecCCCC-----C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccc
Q 010008 383 EL--G---YKLVSGGSDNHLVLVDLRPMGI-----D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT 449 (520)
Q Consensus 383 ~~--G---~~v~~~gt~~~~~~vd~~~~g~-----~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt 449 (520)
+. + +..+.+ ...++++++..... + ...+.+.|.+.||.+.....+. +..++.|||+.+..
T Consensus 360 ~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~---~~~~~~iRi~~~~~-- 432 (452)
T 3n5m_A 360 EEIGEHPLVGDIRG--KGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT---AGYNNILTLAPPLV-- 432 (452)
T ss_dssp HHHTTCTTEEEEEE--SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS---TTCCCEEEECCCTT--
T ss_pred HHHhcCCCeEEEEE--EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc---CCCCCEEEEECCCC--
Confidence 52 2 222222 12344555521111 1 1356777888999986432221 22357899986644
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 010008 450 RGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 450 ~g~~~~d~~~la~~i~~~l~ 469 (520)
.+++|++++++.|+++++
T Consensus 433 --~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 433 --ISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHHHH
Confidence 458999999999988764
No 211
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.78 E-value=1e-18 Score=181.53 Aligned_cols=278 Identities=13% Similarity=0.040 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCC----EEEEcCCCCCcccccccccccccccccc
Q 010008 138 DELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTS 212 (520)
Q Consensus 138 d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD----~Vl~~~~~~~ghls~g~~~~~~~v~~~g 212 (520)
.++++...+++. ..|.+.+.- -+|.+++|+ +|+..++.++++||| +|++.+|.|.++.. .+...|
T Consensus 71 ~~lr~aia~~~~-~~g~~~~~~-~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~--------~~~~~g 140 (391)
T 3bwn_A 71 PELEDAIKDLHG-VVGNAATED-RYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVE--------ETTYVR 140 (391)
T ss_dssp HHHHHHHHHHHH-HHCSBCCSS-SEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHH--------HHHTTC
T ss_pred HHHHHHHHHHHH-hcCCCCCCC-CeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHH--------HHHHcC
Confidence 456555445554 445542110 156678888 899999999999999 99999998865431 223345
Q ss_pred ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhC--CEEEEechhhcccccccc
Q 010008 213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG--ALLMMDMAHISGLVAASV 288 (520)
Q Consensus 213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g--~~li~D~Ah~~gli~~~~ 288 (520)
. +++.+++|.+. ++ .+ ++|+|++++|+||+ .++ +|++ ++++ +++|+|++|+.+ .
T Consensus 141 ~--~~~~~~~d~~~--l~--------~~-~~k~v~l~~p~NPtG~~~~--~l~~--~~~~~~~~ii~De~y~~~----~- 198 (391)
T 3bwn_A 141 S--GMYKWEGDAWG--FD--------KK-GPYIELVTSPNNPDGTIRE--TVVN--RPDDDEAKVIHDFAYYWP----H- 198 (391)
T ss_dssp B--TTEEEEEESTT--CC--------CC-SCEEEEEESSCTTTCCCCC--CCC-------CCCEEEEECTTCST----T-
T ss_pred C--eEEEecCCHHH--cC--------CC-CCEEEEECCCCCCCchhHH--HHHH--HhhcCCCEEEEeCCCCCC----C-
Confidence 4 34455555332 22 13 78999999999997 443 4433 2255 999999998632 1
Q ss_pred cCCCC---CcccEEEeccCccc--CCCCceEEEe-eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc---
Q 010008 289 VADPF---KYCDVVTTTTHKSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--- 359 (520)
Q Consensus 289 ~~~p~---~~aDiv~~S~hK~l--~GprgG~I~~-~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~--- 359 (520)
..++ ...+++++|+||++ +|+|.||+++ ++ ++.+.+.........+. +.....++..+|+...
T Consensus 199 -~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~------~l~~~l~~~~~~~~~~~-~~~~q~a~~~~l~~~~~~~ 270 (391)
T 3bwn_A 199 -YTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDK------EVAKKMVEYIIVNSIGV-SKESQVRTAKILNVLKETC 270 (391)
T ss_dssp -TSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCH------HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHT
T ss_pred -CCccccCCCCeEEEEechhhcCCCccceEEEEecCH------HHHHHHHHHhcccccCC-CHHHHHHHHHHHhCcchhc
Confidence 1122 14579999999986 6889999998 55 56665544321111223 3333334444665432
Q ss_pred ------CchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC-CC-----------CCeeEEEEecCCCCCHHHHHHHHhhcC
Q 010008 360 ------SPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG-GS-----------DNHLVLVDLRPMGIDGARVEKILDMAS 420 (520)
Q Consensus 360 ------~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~-gt-----------~~~~~~vd~~~~g~~~~~~~~~L~~~g 420 (520)
....++..+.+.++++.+.+.|.+. |+.+..+ ++ ...++|+++.. .+.+.+.|+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~----~~~~~~~l~~~g 346 (391)
T 3bwn_A 271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE----ETDLVSELRRHK 346 (391)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS----SCCHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc----HHHHHHHHHHCC
Confidence 3345777888889999999999885 6665432 11 11256777753 245778889999
Q ss_pred eEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 421 I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
|.+..+...| . .++++||++. .++++++++++.|.++++
T Consensus 347 V~v~pg~~fg---~-~~~~iRis~~------~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 347 VMSRAGERCG---S-DKKHVRVSML------SREDVFNVFLERLANMKL 385 (391)
T ss_dssp EECEEGGGGT---C-CTTEEEEESC------SCHHHHHHHHHHHHSCC-
T ss_pred EEEccCCCCC---C-CCCEEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 9995443222 1 3578999975 247889999998877654
No 212
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.78 E-value=5.6e-19 Score=185.82 Aligned_cols=322 Identities=10% Similarity=0.020 Sum_probs=199.9
Q ss_pred ccceEecCCCC--ChHHHHHHHhhhhhccCCC--CCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCC
Q 010008 94 KSLELIASENF--TSRAVMEAVGSCLTNKYSE--GLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLS 167 (520)
Q Consensus 94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~--G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~s 167 (520)
..|+|..+++. .++.+++++...+...-.. +|+... .|.....++++...+++.+..+ ++++ +|.+++
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~--~G~~~~~~lr~aia~~~~~~~~~~~~~~----~iv~t~ 130 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNP--VSNFISFELEKTIKELHEVVGNAAAKDR----YIVFGV 130 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSS--CCTTCCHHHHHHHHHHHHHHTCBCCTTC----EEEEES
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCC--CCccchHHHHHHHHHHHHHhCCcCCCCC----EEEEeC
Confidence 45778777764 3467777877666321111 244321 0311235667665566665544 3454 566788
Q ss_pred hH-HHHHHHHHhh--------CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHh
Q 010008 168 GS-PANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA 238 (520)
Q Consensus 168 Gs-~A~~~~l~al--------l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i 238 (520)
|+ +|+.+++.++ ++|||+|++++|.|.++.. .+...|. +++. +.+|+++|++++
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~-------~~~d~~~l~~~~ 193 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE--------QTKYFDK--KGYV-------WAGNAANYVNVS 193 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------HHHHSCB--TTEE-------EEEEGGGGTTCS
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH--------HHHHcCC--eeee-------ecCCHHHHHHhh
Confidence 87 8999999999 9999999999998754321 2223343 2222 235677888877
Q ss_pred hhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-CcccEEEeccCccc--CCCCce
Q 010008 239 ILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-KYCDVVTTTTHKSL--RGPRGG 313 (520)
Q Consensus 239 ~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-~~aDiv~~S~hK~l--~GprgG 313 (520)
++ ++|+|++++|+||+ ..+ + +++ ++..+.|.+++.... . ...+ ...+++++|+||++ +|.|.|
T Consensus 194 ~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~--s--~~~~~~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 194 NP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHY--T--PIKYKADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp CG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTT--S--CCCSCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred cC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCC--C--ccccCCCceEEEEeChhcCCCCCceEE
Confidence 76 79999999999997 566 3 333 678888987542110 0 0111 24689999999986 688899
Q ss_pred EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc----------CchhHHHHHHHHHHHHHHHHHHHH
Q 010008 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ----------SPEFKVYQNKVVSNCRALASRLVE 383 (520)
Q Consensus 314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~----------~~~~~~~~~~i~~na~~l~~~L~~ 383 (520)
|++++++ ++.+++.........+.+...+.++ ..+|+... ...++...+++.++++.+.+.|.+
T Consensus 262 ~~~~~~~-----~l~~~l~~~~~~~~~~~~~~~q~a~-~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (427)
T 2hox_A 262 WALIKDE-----SVYNNLLNYMTKNTEGTPRETQLRS-LKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ 335 (427)
T ss_dssp EEEECCH-----HHHHHHHHHHHHHTSSCCHHHHHHH-HHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCH-----HHHHHHHHHHHhcCCCCCHHHHHHH-HHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999532 6766665433222234444444443 33555321 223355677888889999999987
Q ss_pred C-CCEE--ec-C----------CCCCeeEEEEecCCCCCHHH-HHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008 384 L-GYKL--VS-G----------GSDNHLVLVDLRPMGIDGAR-VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 448 (520)
Q Consensus 384 ~-G~~v--~~-~----------gt~~~~~~vd~~~~g~~~~~-~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t 448 (520)
. |+.+ +. + .....++|+++.. +..+ +..+|++.||.+..+... +. .++++||++.
T Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f---~~-~~~~~Ris~~--- 405 (427)
T 2hox_A 336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW---EEDKDCYQTFQNGRINTQNGVGF---EA-SSRYVRLSLI--- 405 (427)
T ss_dssp SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS---GGGCSHHHHHHHTTEECEEGGGG---TS-CTTEEEEECS---
T ss_pred CcCccccccccccccccccccCCCCceEEEEECCC---cHHHHHHHHHHHCCEEEcCCCcc---CC-CCCEEEEEec---
Confidence 5 7765 11 1 1124567788753 2333 455567899999543221 12 4678999975
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 010008 449 TRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 449 t~g~~~~d~~~la~~i~~~l~ 469 (520)
.+++++++..+.|.++++
T Consensus 406 ---~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 406 ---KTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp ---SCHHHHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHHHh
Confidence 247889888888877764
No 213
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.78 E-value=8.5e-17 Score=170.65 Aligned_cols=323 Identities=12% Similarity=0.025 Sum_probs=193.3
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--- 181 (520)
.+|.|.+|+...+... .....+ +| ..+...+ .+++++++++...++ .+..+||++|+..++..+.+
T Consensus 92 ~~p~v~~A~~~~~~~~-~~~~~~-~~--~~~~~~~----L~e~la~~~~~~~~~---v~~~~sGseA~~~Alk~a~~~~~ 160 (457)
T 3tfu_A 92 GHPALDQALTTQLRVM-NHVMFG-GL--THEPAAR----LAKLLVDITPAGLDT---VFFSDSGSVSVEVAAKMALQYWR 160 (457)
T ss_dssp TCHHHHHHHHHHHHHC-SCCCSS-SE--ECHHHHH----HHHHHHHHSSTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cCcccc-cc--CCHHHHH----HHHHHHHhCCCCcCE---EEEeCcHHHHHHHHHHHHHHHHH
Confidence 5899999998877542 211111 11 1222223 347888999776542 23456788999999887764
Q ss_pred ----CCC-EEEEcCCCCCcccccccc------ccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh--cCCcEEEE
Q 010008 182 ----PHD-RIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIA 248 (520)
Q Consensus 182 ----pGD-~Vl~~~~~~~ghls~g~~------~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~--~~pklIi~ 248 (520)
||+ +|++.++.|.|....... .+..........+..++++.+ .....|+++|+++++. .++++|++
T Consensus 161 ~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~~~aavi~ 239 (457)
T 3tfu_A 161 GRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAGELAAVVV 239 (457)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred hcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 665 888888876443110000 000000000001122333221 1123588999999873 26788888
Q ss_pred cC-CCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCcccCC--CCceEE
Q 010008 249 GA-SAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRG--PRGGMI 315 (520)
Q Consensus 249 ~~-s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l~G--prgG~I 315 (520)
.. .++++ ..+ +++|+++|+++|++||+|+++ .|+...+.. ..++ ..|++ |++|.|+| +|.|++
T Consensus 240 ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~gr~G~~-~a~~~~~~~pdii--t~sK~l~gG~~~lG~v 315 (457)
T 3tfu_A 240 EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIA-TGFGRTGAL-FAADHAGVSPDIM--CVGKALTGGYLSLAAT 315 (457)
T ss_dssp CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSS-STHHHHTCCCSEE--EECGGGGTTSSCCEEE
T ss_pred eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCc-cCCccccch-hHhHhcCCCceEE--EEChhhhCCCcceEEE
Confidence 76 55543 332 899999999999999999995 444322211 1111 35777 55699977 689999
Q ss_pred EeeCCCcchhhHHHhhc---cc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----CC
Q 010008 316 FFKKDPVLGVELESAIN---NA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GY 386 (520)
Q Consensus 316 ~~~~~~~~~~~l~~~i~---~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G~ 386 (520)
++++ ++.+.+. .. ......+++.....+++ ++|+.+.++ .+.+++.++.+++.+.|.+. ++
T Consensus 316 ~~~~------~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~-aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v 385 (457)
T 3tfu_A 316 LCTA------DVAHTISAGAAGALMHGPTFMANPLACAVSV-ASVELLLGQ---DWRTRITELAAGLTAGLDTARALPAV 385 (457)
T ss_dssp EEEH------HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHH-HHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTE
T ss_pred EEcH------HHHHHhhccCCCceeEecCCCcCHHHHHHHH-HHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 9998 6776663 11 11122333333333333 467765443 34566777788888888763 23
Q ss_pred EEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008 387 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466 (520)
Q Consensus 387 ~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~ 466 (520)
..+.+ ...++++++.. ..+..++.+.|.+.||.+. |. .+.+||+.+.. .+++|++++++.|++
T Consensus 386 ~~vr~--~G~~~~i~l~~-~~~~~~~~~~l~~~Gv~v~----~~------~~~lRi~p~~~----~t~eei~~~l~~L~~ 448 (457)
T 3tfu_A 386 TDVRV--CGAIGVIECDR-PVDLAVATPAALDRGVWLR----PF------RNLVYAMPPYI----CTPAEITQITSAMVE 448 (457)
T ss_dssp EEEEE--CSSCEEEEESS-CCCHHHHHHHHHHTTEECC----CB------TTEEEECCCTT----CCHHHHHHHHHHHHH
T ss_pred eeeec--CCeEEEEEECC-cccHHHHHHHHHHCCeEEE----ec------CCEEEEECCCC----CCHHHHHHHHHHHHH
Confidence 22222 23456667643 3456778888888899984 21 25899986644 358999999999999
Q ss_pred HHHH
Q 010008 467 GVEI 470 (520)
Q Consensus 467 ~l~~ 470 (520)
+++.
T Consensus 449 ~l~~ 452 (457)
T 3tfu_A 449 VARL 452 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 214
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.77 E-value=1.8e-16 Score=166.40 Aligned_cols=322 Identities=14% Similarity=0.097 Sum_probs=188.2
Q ss_pred ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008 94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 168 (520)
Q Consensus 94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG 168 (520)
..|++.++. + ..+|.|.+|+...+.+....+||. +...++ +++++++++ ..++ .+..+||
T Consensus 56 ~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~l----~~~la~~~~-~~~~---v~~~~sG 120 (434)
T 3l44_A 56 KYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPT-------ALEVKF----AKMLKEAMP-ALDK---VRFVNSG 120 (434)
T ss_dssp EEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCC-------HHHHHH----HHHHHHHCT-TCSE---EEEESSH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCC-------HHHHHH----HHHHHHhCC-CCCE---EEEeCch
Confidence 345655432 2 258999999988876533223332 222222 357888886 4442 2345678
Q ss_pred HHHHHHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC-------------CCHHH
Q 010008 169 SPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDM 233 (520)
Q Consensus 169 s~A~~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~-------------iD~d~ 233 (520)
++|+..++..+.. ++|+|++.++.|.|.... .....|.......++. ..+. -|+++
T Consensus 121 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~ 191 (434)
T 3l44_A 121 TEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDL-------VLVAAGSGPSTLGTPD--SAGVPQSIAQEVITVPFNNVET 191 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGG-------GGBC-------CCCBS--STTCCHHHHTTEEEECTTCHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHH-------HHhhcCCcccccCCCC--cCCCCCcCCCceEecCcccHHH
Confidence 8999999887654 789999999876443211 1111221111001110 0011 28999
Q ss_pred HHHHhhhc--CCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEec
Q 010008 234 LEKTAILF--RPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT 302 (520)
Q Consensus 234 le~~i~~~--~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S 302 (520)
|+++++.. ++++|+++.+++++ ..+ +++|+++|++||++||+|++|. |+ ..+... ..+. ..|+++
T Consensus 192 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~-g~-~~g~~~~~~~~~~~~di~t-- 267 (434)
T 3l44_A 192 LKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT-AF-RFMYGGAQDLLGVTPDLTA-- 267 (434)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TT-TSSSSCHHHHHTCCCSEEE--
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-ce-eccccHHHHHcCCCCCeee--
Confidence 99998742 56777777554433 455 9999999999999999999964 44 222110 0001 256665
Q ss_pred cCccc-CCCCceEEEeeCCCcchhhHHHhhccc--CCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008 303 THKSL-RGPRGGMIFFKKDPVLGVELESAINNA--VFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 378 (520)
Q Consensus 303 ~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~--~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~ 378 (520)
++|++ +|+|.|++++++ ++.+.+... .+. +..++ +....++..++++.+.. +++.+++.++.+++.
T Consensus 268 ~sK~~~~G~~iG~~~~~~------~i~~~~~~~~~~~~~~t~~~-~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~ 337 (434)
T 3l44_A 268 LGKVIGGGLPIGAYGGKK------EIMEQVAPLGPAYQAGTMAG-NPASMASGIACLEVLQQ---EGLYEKLDELGATLE 337 (434)
T ss_dssp EEGGGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTTT-CHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCeeeEEEcH------HHHHhhccCCCcccCCCCCc-CHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHH
Confidence 55988 567889998887 677666542 111 22233 33344444446776544 344566666777777
Q ss_pred HHHHH----CCCE-EecCCCCCeeEEEEecCCCC------------CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEE
Q 010008 379 SRLVE----LGYK-LVSGGSDNHLVLVDLRPMGI------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIR 441 (520)
Q Consensus 379 ~~L~~----~G~~-v~~~gt~~~~~~vd~~~~g~------------~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giR 441 (520)
+.|.+ .++. .+.+ ...++++++..... ....+.+.|.+.||.+. |+ ....+|
T Consensus 338 ~~L~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~-----~~~~~r 406 (434)
T 3l44_A 338 KGILEQAAKHNIDITLNR--LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLA----PS-----KYEAWF 406 (434)
T ss_dssp HHHHHHHHHTTCCEEEEE--ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECC----SS-----TTCCEE
T ss_pred HHHHHHHHhCCCCEEEEe--eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEe----ec-----CCCcEE
Confidence 77655 3432 2221 23455666532221 12456777888999984 32 134688
Q ss_pred EccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 442 IGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 442 ig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
+++ ..+++|++++.+.|+++++.
T Consensus 407 l~~------~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 407 LTT------EHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp CCT------TCCHHHHHHHHHHHHHHHHH
T ss_pred Eec------ccCHHHHHHHHHHHHHHHHH
Confidence 852 24689999999999998864
No 215
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.77 E-value=4.1e-16 Score=165.31 Aligned_cols=329 Identities=12% Similarity=0.005 Sum_probs=186.8
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--- 181 (520)
.+|.|.+|+...+.+.. ..++...| ..+...+ ..++++++++.+.++ .+..+||++|+.+++.++.+
T Consensus 68 ~~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~~----la~~l~~~~~~~~~~---v~~~~gGseA~~~al~~~~~~~~ 137 (460)
T 3gju_A 68 GRQKIADAIATQAKNLA-YYHAYVGH--GTEASIT----LAKMIIDRAPKGMSR---VYFGLSGSDANETNIKLIWYYNN 137 (460)
T ss_dssp CCHHHHHHHHHHHHHHS-CCCCCTTC--CCHHHHH----HHHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-cccccccc--CCHHHHH----HHHHHHhhCCCCcCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence 47899999887765421 11221111 1222222 346788888766542 23346677999999988763
Q ss_pred -----CCCEEEEcCCCCCcccccc-----ccccccccccccceEEEEEccc--CCCCCCCC--------HHHHHHHhhh-
Q 010008 182 -----PHDRIMGLDLPHGGHLSHG-----FMTPKRRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL- 240 (520)
Q Consensus 182 -----pGD~Vl~~~~~~~ghls~g-----~~~~~~~v~~~g~~~~~v~~~~--d~~~~~iD--------~d~le~~i~~- 240 (520)
++|+|++.++.|.|..... ...+..........+..++++. ...+...| +++|+++++.
T Consensus 138 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~ 217 (460)
T 3gju_A 138 VLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE 217 (460)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc
Confidence 5699999998875432100 0000000001111223334322 11111233 6889888873
Q ss_pred --cCCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC-CC-CC-cccEEEeccCcccCC
Q 010008 241 --FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DP-FK-YCDVVTTTTHKSLRG 309 (520)
Q Consensus 241 --~~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p-~~-~aDiv~~S~hK~l~G 309 (520)
.++++|++..+++++ ..+ +++|+++|++||++||+|++|. |+...+... .. +. ..|++++ +|+|+|
T Consensus 218 ~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~--sK~l~g 294 (460)
T 3gju_A 218 GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLITI--AKGLTS 294 (460)
T ss_dssp CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEE--CGGGTT
T ss_pred CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeee--ehhhcC
Confidence 256788887655443 343 8999999999999999999965 443222100 00 01 3577755 599976
Q ss_pred --CCceEEEeeCCCcchhhHHHhhcc------c-CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008 310 --PRGGMIFFKKDPVLGVELESAINN------A-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 380 (520)
Q Consensus 310 --prgG~I~~~~~~~~~~~l~~~i~~------~-~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~ 380 (520)
+|.|++++++ ++.+.+.. . ......+++..... +..++|+.+..++ +.+++.++.+.+.+.
T Consensus 295 G~~~lg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~~~~~~a-aa~aal~~~~~~~---~~~~~~~~~~~~~~~ 364 (460)
T 3gju_A 295 AYAPLSGVIVAD------RVWQVLVQGSDKLGSLGHGWTYSAHPICVA-AGVANLELIDEMD---LVTNAGETGAYFRAE 364 (460)
T ss_dssp TSSCCEEEEEEH------HHHHHHHHHHHHHCSCSCCCTTTTCHHHHH-HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECH------HHHHHHhcccccccccccCCCCCCCHHHHH-HHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence 7889999988 67776642 1 22222333333333 3334676543333 344555555555555
Q ss_pred HHH----CC-CEEecCCCCCeeEEEEecCCCC----------CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccC
Q 010008 381 LVE----LG-YKLVSGGSDNHLVLVDLRPMGI----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP 445 (520)
Q Consensus 381 L~~----~G-~~v~~~gt~~~~~~vd~~~~g~----------~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~ 445 (520)
|.+ .+ +..+.+ ...++++++..... ....+.+.|.+.||.+. |+. ..+.|||+.+
T Consensus 365 l~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~----~~~~iRi~~~ 434 (460)
T 3gju_A 365 LAKAVGGHKNVGEVRG--DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGR----AMP----QGDILGFAPP 434 (460)
T ss_dssp HHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECE----ECS----SSCEEEECCC
T ss_pred HHHHHhcCCCeEEEee--eeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEe----cCC----CCCEEEEECC
Confidence 533 22 223322 12345555542110 13467777888999884 322 2478999876
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHH
Q 010008 446 AMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 446 ~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
.. .+++|++++++.|+++++.
T Consensus 435 ~~----~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 435 LC----LTREQADIVVSKTADAVKS 455 (460)
T ss_dssp TT----CCHHHHHHHHHHHHHHHHH
T ss_pred CC----CCHHHHHHHHHHHHHHHHH
Confidence 44 3589999999999998864
No 216
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.76 E-value=5.2e-16 Score=165.45 Aligned_cols=328 Identities=10% Similarity=-0.011 Sum_probs=192.0
Q ss_pred CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC--
Q 010008 104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 181 (520)
Q Consensus 104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~-- 181 (520)
..+|.|.+|+...+.. +..+++. . ...+...+ ..++++++++.+.+. .+..+||++|+..++..+.+
T Consensus 70 h~~p~v~~A~~~~l~~-~~~~~~~-~--~~~~~~~~----la~~l~~~~~~~~~~---v~~~~sGseA~~~Aik~a~~~~ 138 (476)
T 3i5t_A 70 YGRREIVDAMAHQAMV-LPYASPW-Y--MATSPAAR----LAEKIATLTPGDLNR---IFFTTGGSTAVDSALRFSEFYN 138 (476)
T ss_dssp BCCHHHHHHHHHHHHH-CCCCCTT-T--CBCHHHHH----HHHHHHTTSSTTCCE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-ccCcccC-c--cCCHHHHH----HHHHHHhcCCCCcCE---EEEeCchHHHHHHHHHHHHHHH
Confidence 3589999999888754 3223321 1 12233333 336888888765542 23456788999999988753
Q ss_pred ------CCCEEEEcCCCCCccccc-----cccccccccccccceEEEEEcccCCCCCCCC--------HHHHHHHhhh--
Q 010008 182 ------PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDESTGLVD--------YDMLEKTAIL-- 240 (520)
Q Consensus 182 ------pGD~Vl~~~~~~~ghls~-----g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD--------~d~le~~i~~-- 240 (520)
.+++|++.++.|.|.... +...++.........+..++++........| +++|+++++.
T Consensus 139 ~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 218 (476)
T 3i5t_A 139 NVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG 218 (476)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC
Confidence 357999999877543210 0000000000001112333333211111122 7889888864
Q ss_pred -cCCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-C-CCC-cccEEEeccCcccCC
Q 010008 241 -FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-D-PFK-YCDVVTTTTHKSLRG 309 (520)
Q Consensus 241 -~~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~-p~~-~aDiv~~S~hK~l~G 309 (520)
.++++|++..+++++ ..+ +++|+++|+++|++||+|++|. |+...|.. . . .+. ..|++++| |+++|
T Consensus 219 ~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~ 295 (476)
T 3i5t_A 219 PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVTS 295 (476)
T ss_dssp GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGGT
T ss_pred CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhcC
Confidence 256788887554433 333 8999999999999999999964 44322211 0 0 111 35787654 99854
Q ss_pred --CCceEEEeeCCCcchhhHHHhhccc-------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008 310 --PRGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 380 (520)
Q Consensus 310 --prgG~I~~~~~~~~~~~l~~~i~~~-------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~ 380 (520)
++.|++++++ ++.+.+... ...+..+++.. ..+|..++|+.+.+ +++.+++.++.+++.+.
T Consensus 296 G~~plg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~np~-a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~ 365 (476)
T 3i5t_A 296 GYVPLGGLAISE------AVLARISGENAKGSWFTNGYTYSNQPV-ACAAALANIELMER---EGIVDQAREMADYFAAA 365 (476)
T ss_dssp TSSCCEEEEECH------HHHHTTSGGGCTTCEECCCCTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred CCcCeEEEEECH------HHHHHHhcCCcccccccccCCCCcCHH-HHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHH
Confidence 7889999987 777776542 22223344333 33333346765543 23566777788888888
Q ss_pred HHHCC----CEEecCCCCCeeEEEEecCCCC----------CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008 381 LVELG----YKLVSGGSDNHLVLVDLRPMGI----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA 446 (520)
Q Consensus 381 L~~~G----~~v~~~gt~~~~~~vd~~~~g~----------~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~ 446 (520)
|.+.+ +..+.+ ...++.+++..... ....+.+.|.+.||.+.. . + +.|||+.+.
T Consensus 366 L~~l~~~~~v~~v~~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~-----g-~~iRi~p~l 433 (476)
T 3i5t_A 366 LASLRDLPGVAETRS--VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRP----L-----G-DLCVISPPL 433 (476)
T ss_dssp HHTTTTSTTEEEEEE--ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEE----E-----T-TEEEECCCT
T ss_pred HHHHhcCCCeEEEEe--cCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEe----c-----C-CEEEEECCC
Confidence 87532 222221 12345566643211 034566777788999843 1 2 689998664
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 447 MTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 447 ~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
. .+++|++++.+.|+++++..
T Consensus 434 ~----~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 434 I----ISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp T----CCHHHHHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHHHHHHH
Confidence 4 45899999999999998754
No 217
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.76 E-value=4.6e-16 Score=164.36 Aligned_cols=319 Identities=12% Similarity=0.033 Sum_probs=180.5
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--- 181 (520)
.+|.|.+|+...+... ..+++ . ....+...+ ..++++++++...+. .+..+||++|+..++.++.+
T Consensus 61 ~~p~v~~A~~~~~~~~-~~~~~-~--~~~~~~~~~----la~~l~~~~~~~~~~---v~~~~sGseA~~~al~~~~~~~~ 129 (448)
T 3dod_A 61 RKKELDDAIKKQLGKI-AHSTL-L--GMTNVPATQ----LAETLIDISPKKLTR---VFYSDSGAEAMEIALKMAFQYWK 129 (448)
T ss_dssp SCHHHHHHHHHHHTTC-SCCCC-S--SSEEHHHHH----HHHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cCccc-c--ccCCHHHHH----HHHHHHHhCCCCCCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence 4799999998877542 11111 1 112232333 337888888765542 23456788999999988765
Q ss_pred -CC----CEEEEcCCCCCccccccccccccccccccce----------EEEEEcccCCCCCC-----------CCHHHHH
Q 010008 182 -PH----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGL-----------VDYDMLE 235 (520)
Q Consensus 182 -pG----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~----------~~~v~~~~d~~~~~-----------iD~d~le 235 (520)
+| |+|++.++.|.|..... ....+.. .....++.+ ..+. .|+++|+
T Consensus 130 ~~G~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le 201 (448)
T 3dod_A 130 NIGKPEKQKFIAMKNGYHGDTIGA-------VSVGSIELFHHVYGPLMFESYKAPIP-YVYRSESGDPDECRDQCLRELA 201 (448)
T ss_dssp HTTCTTCCEEEEEC------------------------------------CEEECCC-CCTTSSSCCHHHHHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCCCccHHH-------HHhcCCccccccccCCCCCceEeCCC-ccccCCccchhhhhHHHHHHHH
Confidence 55 99999998874432111 1111110 011122211 1111 2588999
Q ss_pred HHhh--hcCCcEEEEcCCC--CCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEecc
Q 010008 236 KTAI--LFRPKLIIAGASA--YPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTT 303 (520)
Q Consensus 236 ~~i~--~~~pklIi~~~s~--~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~ 303 (520)
++++ ..++++|++...+ +++ ..+ +++|+++|++||++||+|++|. |+...+.. . ..+. ..|++++
T Consensus 202 ~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~-- 278 (448)
T 3dod_A 202 QLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-GFGRTGKMFACEHENVQPDLMAA-- 278 (448)
T ss_dssp HHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--
T ss_pred HHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccchhhhhhcCCCCCEEEe--
Confidence 9887 2256778777543 333 333 8999999999999999999975 43322211 0 0011 2567654
Q ss_pred CcccC-CC-CceEEEeeCCCcchhhHHHhhcc-------cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008 304 HKSLR-GP-RGGMIFFKKDPVLGVELESAINN-------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC 374 (520)
Q Consensus 304 hK~l~-Gp-rgG~I~~~~~~~~~~~l~~~i~~-------~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na 374 (520)
+|++. |+ |.|++++++ ++.+.+.. ....+..+++.. ..++...+|+.+..+ ++.+++.++.
T Consensus 279 sK~l~~G~~~ig~v~~~~------~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~aaa~aal~~~~~~---~~~~~~~~~~ 348 (448)
T 3dod_A 279 GKGITGGYLPIAVTFATE------DIYKAFYDDYENLKTFFHGHSYTGNQL-GCAVALENLALFESE---NIVEQVAEKS 348 (448)
T ss_dssp CGGGGTTSSCCEEEEEEH------HHHHTTCSCGGGCCCCCCCCTTTTCHH-HHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred cccccCCcCceEEEEECH------HHHHHhhhccccCCcccccCCCCcCHH-HHHHHHHHHHHHhcc---cHHHHHHHHH
Confidence 59984 53 889999988 77777654 222222333333 333333467654332 3355566666
Q ss_pred HHHHHHHHH-CCC---EEecCCCCCeeEEEEecCCCCC----------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEE
Q 010008 375 RALASRLVE-LGY---KLVSGGSDNHLVLVDLRPMGID----------GARVEKILDMASITLNKNSVPGDKSALVPGGI 440 (520)
Q Consensus 375 ~~l~~~L~~-~G~---~v~~~gt~~~~~~vd~~~~g~~----------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~gi 440 (520)
+++.+.|.+ .++ ..+.+ ...++++++.....+ ...+.+.|.+.||.+. |+ .+.|
T Consensus 349 ~~~~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~------~~~i 416 (448)
T 3dod_A 349 KKLHFLLQDLHALPHVGDIRQ--LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTR----PL------GDVI 416 (448)
T ss_dssp HHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECC----EE------TTEE
T ss_pred HHHHHHHHHHhcCCCeEEEEe--eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEe----cc------CCEE
Confidence 666666655 122 22221 123556666432111 3567777888899983 32 2689
Q ss_pred EEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 441 RIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 441 Rig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
||+.+.. .+++|++++.+.|+++++..
T Consensus 417 Ri~~~~~----~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 417 AFLPPLA----STAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp EECCCTT----CCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCC----CCHHHHHHHHHHHHHHHHHH
Confidence 9976543 45899999999999988643
No 218
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.76 E-value=1.6e-15 Score=158.95 Aligned_cols=317 Identities=14% Similarity=0.063 Sum_probs=184.5
Q ss_pred cceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 95 SLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 95 ~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
.|++..+. + ..+|.|.+|+...+......++ ..+... ...++++++++ ++++ .+..++|+
T Consensus 54 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-------~~~~~~----~la~~l~~~~~-~~~~---v~~~~ggs 118 (427)
T 3fq8_A 54 YIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGA-------PCALEN----VLAEMVNDAVP-SIEM---VRFVNSGT 118 (427)
T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSS-------CCHHHH----HHHHHHHHHST-TCSE---EEEESSHH
T ss_pred EEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCC-------CCHHHH----HHHHHHHHhCC-CCCE---EEEeCCHH
Confidence 46665542 2 2589999999887754311111 122222 33467888887 4442 24456777
Q ss_pred HHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceE-----------------EEEEcccCCCCCCCC
Q 010008 170 PANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-----------------ESMPYRLDESTGLVD 230 (520)
Q Consensus 170 ~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~-----------------~~v~~~~d~~~~~iD 230 (520)
+|+.+++... ...+|+|+++++.|.|..... ....+... .++.++. -|
T Consensus 119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d 185 (427)
T 3fq8_A 119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMF-------LVKAGSGVATLGLPSSPGVPKKTTANTLTTPY------ND 185 (427)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGG-------CSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET------TC
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHH-------HHhcCCcccccCCCCCCCCCCcccCceeecCC------CC
Confidence 9999888432 124588998888765432111 01111100 0111111 18
Q ss_pred HHHHHHHhhhc--CCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEE
Q 010008 231 YDMLEKTAILF--RPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVV 299 (520)
Q Consensus 231 ~d~le~~i~~~--~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv 299 (520)
+++|+++++++ ++++|++..+++++ ..+ +++|+++|++||++||+|++|. |+ ..+... .... ..|++
T Consensus 186 ~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~ 263 (427)
T 3fq8_A 186 LEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLT 263 (427)
T ss_dssp HHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEE
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChh
Confidence 99999999764 56788887554433 556 9999999999999999999975 55 322110 0011 25766
Q ss_pred EeccCccc-CCCCceEEEeeCCCcchhhHHHhhccc---CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008 300 TTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR 375 (520)
Q Consensus 300 ~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~---~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~ 375 (520)
++ +|++ +|.|.|++++++ ++.+.+... ...+..++ +...+++...+++.+..+ ++.+++.++.+
T Consensus 264 t~--sK~~~~G~~~G~~~~~~------~~~~~~~~~~~~~~~~t~~~-~~~~~aa~~aal~~~~~~---~~~~~~~~~~~ 331 (427)
T 3fq8_A 264 TL--GKIIGGGLPVGAYGGKR------EIMQLVAPAGPMYQAGTLSG-NPLAMTAGIKTLELLRQP---GTYEYLDQITK 331 (427)
T ss_dssp EE--CGGGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTTT-CHHHHHHHHHHHHHHTST---THHHHHHHHHH
T ss_pred hh--hhhhhCCcceEEEEEcH------HHHHhhccCCCccccCCCCc-CHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 54 5998 567889999987 677766532 11111222 334444444567765443 34566666677
Q ss_pred HHHHHHHH----CCCEEecCCCCCeeEEEEecCCCCC------------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008 376 ALASRLVE----LGYKLVSGGSDNHLVLVDLRPMGID------------GARVEKILDMASITLNKNSVPGDKSALVPGG 439 (520)
Q Consensus 376 ~l~~~L~~----~G~~v~~~gt~~~~~~vd~~~~g~~------------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~g 439 (520)
.+.+.|.+ .++.....+ ...++++++....+. ...+.+.|.+.||.+.. +. ...
T Consensus 332 ~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~----~~-----~~r 401 (427)
T 3fq8_A 332 RLSDGLLAIAQETGHAACGGQ-VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP----SQ-----FEA 401 (427)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE-ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCS----ST-----TSC
T ss_pred HHHHHHHHHHHhCCCCeEEEE-eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEec----CC-----CCC
Confidence 77777655 233221111 234556666432222 34577778889999843 21 123
Q ss_pred EEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
+|++ . ..+++|++++.+.|+++++
T Consensus 402 ~~~~--~----~~t~e~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 402 GFTS--L----AHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp EECC--T----TCCHHHHHHHHHHHHHHHH
T ss_pred EEee--C----cCCHHHHHHHHHHHHHHHH
Confidence 4543 2 2468999999999998875
No 219
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.76 E-value=2.1e-16 Score=167.59 Aligned_cols=327 Identities=11% Similarity=0.014 Sum_probs=185.9
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--- 181 (520)
.+|.|.+|+...+.+.. .+++..+| ..+... ..+++++++++.+.++ .+..++|++|+..++.++.+
T Consensus 67 ~~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~----~la~~l~~~~~~~~~~---v~~~~ggseA~~~al~~~~~~~~ 136 (459)
T 4a6r_A 67 GRKDFAEAARRQMEELP-FYNTFFKT--THPAVV----ELSSLLAEVTPAGFDR---VFYTNSGSESVDTMIRMVRRYWD 136 (459)
T ss_dssp CCHHHHHHHHHHHHHCS-CCCTTSSS--CCHHHH----HHHHHHHHHSCTTCCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-cccccccc--CCHHHH----HHHHHHHHhCCCCCCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence 47999999988775421 12222111 122222 3347888999877653 23345677999999988865
Q ss_pred -----CCCEEEEcCCCCCccccc-----cccccccccccccceEEEEEccc--CCCCCCCC--------HHHHHHHhhh-
Q 010008 182 -----PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL- 240 (520)
Q Consensus 182 -----pGD~Vl~~~~~~~ghls~-----g~~~~~~~v~~~g~~~~~v~~~~--d~~~~~iD--------~d~le~~i~~- 240 (520)
++|+|++.++.|.|.... +...+..........+..++++. +..++ +| +++|+++++.
T Consensus 137 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~ 215 (459)
T 4a6r_A 137 VQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI 215 (459)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence 579999999887543210 00000000000011123333222 10112 45 7889988874
Q ss_pred --cCCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC-CC-CC-cccEEEeccCcccCC
Q 010008 241 --FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DP-FK-YCDVVTTTTHKSLRG 309 (520)
Q Consensus 241 --~~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p-~~-~aDiv~~S~hK~l~G 309 (520)
.++++|++...++++ ..+ +++|+++|+++|++||+|++|. |+...+... .. +. ..|++++ +|+|+|
T Consensus 216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~pdi~t~--sK~l~g 292 (459)
T 4a6r_A 216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-GFGRTGEWFGHQHFGFQPDLFTA--AKGLSS 292 (459)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGGT
T ss_pred CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeeh--hhhhcC
Confidence 256777776544332 344 8999999999999999999964 443222110 00 01 3577765 599865
Q ss_pred --CCceEEEeeCCCcchhhHHHhhcc---cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHH-HHHHHHHHHH-H
Q 010008 310 --PRGGMIFFKKDPVLGVELESAINN---AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRALASRL-V 382 (520)
Q Consensus 310 --prgG~I~~~~~~~~~~~l~~~i~~---~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~-~na~~l~~~L-~ 382 (520)
+|.|++++++ ++.+.+.. ....+..+++.....+++ .+|+.+..++ +.+++. ++.+++.+.| .
T Consensus 293 g~~~lg~v~~~~------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~~---~~~~~~~~~~~~~~~~l~~ 362 (459)
T 4a6r_A 293 GYLPIGAVFVGK------RVAEGLIAGGDFNHGFTYSGHPVCAAVAH-ANVAALRDEG---IVQRVKDDIGPYMQKRWRE 362 (459)
T ss_dssp TSSCCEEEEECH------HHHHHHHHHCTTHHHHHHCSCHHHHHHHH-HHHHHHHHTC---HHHHHHHTHHHHHHHHHHH
T ss_pred CCCCccceeeCH------HHHHHhhcCCCcccCCCCCCCHHHHHHHH-HHHHHHhcch---HHHHHHHHHHHHHHHHHHH
Confidence 7889999987 67666642 111111233333333333 3566543333 344555 5556666666 3
Q ss_pred H---C-CCEEecCCCCCeeEEEEecCCCCC----------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008 383 E---L-GYKLVSGGSDNHLVLVDLRPMGID----------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 448 (520)
Q Consensus 383 ~---~-G~~v~~~gt~~~~~~vd~~~~g~~----------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t 448 (520)
. . ++..+.+ ...++.+++.....+ ...+.+.|.+.||.+. |+ .+.+||+.+..
T Consensus 363 ~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~------g~~iRi~~~~~- 429 (459)
T 4a6r_A 363 TFSRFEHVDDVRG--VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMR----AC------GDHIVSAPPLV- 429 (459)
T ss_dssp HHTTCTTEEEEEE--ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECE----EE------TTEEEECCCTT-
T ss_pred HHhcCCCeEEEEE--EEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEe----cC------CCEEEEECCCC-
Confidence 2 2 2222222 123455555421111 4557777888899984 32 16899987644
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHH
Q 010008 449 TRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 449 t~g~~~~d~~~la~~i~~~l~~~ 471 (520)
.+++|++++.+.|+++++..
T Consensus 430 ---~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 430 ---MTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHH
Confidence 35899999999999988754
No 220
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.75 E-value=4.5e-16 Score=163.36 Aligned_cols=321 Identities=14% Similarity=0.093 Sum_probs=186.8
Q ss_pred ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008 94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 168 (520)
Q Consensus 94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG 168 (520)
..|++.++- | ..+|.|.+|+...+.+....+|| .+...++ +++++++++ ..++ .+..+||
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~l----~~~la~~~~-~~~~---v~~~~~G 118 (429)
T 3k28_A 54 EYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAP-------TEIENKL----AKLVIERVP-SIEI---VRMVNSG 118 (429)
T ss_dssp EEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSC-------CHHHHHH----HHHHHHHST-TCSE---EEEESSH
T ss_pred EEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCC-------CHHHHHH----HHHHHHhCC-CCCE---EEEeCCh
Confidence 346665542 2 25899999998887653322232 2222333 357788886 3432 2345678
Q ss_pred HHHHHHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC-------------CCHHH
Q 010008 169 SPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDM 233 (520)
Q Consensus 169 s~A~~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~-------------iD~d~ 233 (520)
++|+..++..+.. ++|+|++.++.|.|..... ....|.......++. ..+. -|+++
T Consensus 119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 3k28_A 119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSL-------LIKAGSGVATLGLPD--SPGVPEGVAKNTITVAYNDLES 189 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGG-------CSSCCTTC-----CC--CTTCCHHHHTTEEEEETTCHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHH-------HHhcCCcccccCCCC--cCCCCCcccCceeecCCCCHHH
Confidence 8999998877643 6789999888764432111 111121111111110 0111 18999
Q ss_pred HHHHhhhc--CCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEec
Q 010008 234 LEKTAILF--RPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT 302 (520)
Q Consensus 234 le~~i~~~--~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S 302 (520)
++++++.+ ++++|++..+++++ ..+ +++|+++|++||++||+|++| .|+ ..+... ..+. ..|+++
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~-~g~-~~g~~~~~~~~~~~~di~t-- 265 (429)
T 3k28_A 190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVM-TGF-RVAYNCGQGYYGVTPDLTC-- 265 (429)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTT-TSSTTHHHHHHTCCCSEEE--
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-ccc-ccCcchHHHHhCCCCceeh--
Confidence 99988742 56777777544332 455 899999999999999999997 454 322110 0001 246665
Q ss_pred cCccc-CCCCceEEEeeCCCcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010008 303 THKSL-RGPRGGMIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS 379 (520)
Q Consensus 303 ~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~ 379 (520)
++|++ .|+|.|++++++ ++.+.+... .+.+...+.+....++..++++... ++..+++.++++++.+
T Consensus 266 ~sK~~~~G~~iG~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~ 335 (429)
T 3k28_A 266 LGKVIGGGLPVGAYGGKA------EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEA 335 (429)
T ss_dssp ECGGGGTTSCCEEEEECH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCCCeEEEEEcH------HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 55998 457889999987 677666432 1111111223333333334566432 5677888888888888
Q ss_pred HHHHC----CC-EEecCCCCCeeEEEEecCCCC---------C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEE
Q 010008 380 RLVEL----GY-KLVSGGSDNHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRI 442 (520)
Q Consensus 380 ~L~~~----G~-~v~~~gt~~~~~~vd~~~~g~---------~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRi 442 (520)
.|.+. ++ ..+.+ ...++++.+..... + ...+.+.|.+.||.+. |+ ..+.+|+
T Consensus 336 ~L~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~-----~~~~~r~ 404 (429)
T 3k28_A 336 GLRKAAEKHGIPHHINR--AGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLP----PS-----QFEGLFL 404 (429)
T ss_dssp HHHHHHHHTTCCCEEEE--ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECC----SS-----TTSCBCC
T ss_pred HHHHHHhhCCCCEEEEe--eccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEe----cC-----CCCCEEE
Confidence 88662 22 12221 12345555432111 1 2556677888999984 32 2346787
Q ss_pred ccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 443 GSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 443 g~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
++ ..+++|++++.+.|+++++
T Consensus 405 ~~------~~t~e~i~~~l~~l~~~l~ 425 (429)
T 3k28_A 405 ST------VHSDADIEATIAAAEIAMS 425 (429)
T ss_dssp CT------TCCHHHHHHHHHHHHHHHH
T ss_pred EC------CCCHHHHHHHHHHHHHHHH
Confidence 53 2568999999999998875
No 221
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.74 E-value=2.3e-18 Score=180.17 Aligned_cols=312 Identities=8% Similarity=0.058 Sum_probs=180.8
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC----CCCEEEEcCCCCCccccccccccccccc
Q 010008 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVS 209 (520)
Q Consensus 134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~----pGD~Vl~~~~~~~ghls~g~~~~~~~v~ 209 (520)
.+..-.+|+....++.+++|++... . -+.++.+|.++.+++++.++ +||.|+++...|.+.+ +.+.
T Consensus 93 ~~~~~~~e~~~~~~~~~~lGlp~~~-~-~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~--------kAl~ 162 (450)
T 3bc8_A 93 SSLLNKITNSLVLNVIKLAGVHSVA-S-CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMV 162 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCC-E-EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCc-e-EEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH--------HHHH
Confidence 3445577878888999999997542 1 13334444344434444434 3899998876553332 3556
Q ss_pred cccceEEEEEcccCCCCCCCCHHHHHHHhhhcC--CcEEEEc-CCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccc
Q 010008 210 GTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAG-ASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLV 284 (520)
Q Consensus 210 ~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~--pklIi~~-~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli 284 (520)
+.|.....+....+.+.+.+|+++|+++++++. .+.+++. .+.|+ ...|+++|+++|+++|++|++|+||.+.+.
T Consensus 163 l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~ 242 (450)
T 3bc8_A 163 TAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSS 242 (450)
T ss_dssp HTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred HcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhh
Confidence 677643333322223467899999999998754 2344444 44454 378999999999999999999999875433
Q ss_pred cccccC-CCC--CcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCC-CChHHHHHHHHHHHHHhc
Q 010008 285 AASVVA-DPF--KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQG-GPHNHTIGGLAVCLKHAQ 359 (520)
Q Consensus 285 ~~~~~~-~p~--~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g-~p~~~~iaala~al~~~~ 359 (520)
.....+ ..+ +++|+++.|+|||+..|-+ ++++++++ ++.+++.. .+++.+. +|. ..++.++....
T Consensus 243 ~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~-----~~~~~~~~-~~~g~~s~Sps----L~l~~~l~~~G 312 (450)
T 3bc8_A 243 KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISK-MYPGRASASPS----LDVLITLLSLG 312 (450)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHH-HSCSCBCSHHH----HHHHHHHHHHH
T ss_pred hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCH-----HHHHHHHH-HhhcCCcccHH----HHHHHHHHHHH
Confidence 211111 223 4799999999999998876 56665653 55555543 2444332 222 22333343333
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH-C---CCEEecCCCCCee-EEEEecCC----CCCHHHHHHHHhhcC---eEEcCC-
Q 010008 360 SPEFKVYQNKVVSNCRALASRLVE-L---GYKLVSGGSDNHL-VLVDLRPM----GIDGARVEKILDMAS---ITLNKN- 426 (520)
Q Consensus 360 ~~~~~~~~~~i~~na~~l~~~L~~-~---G~~v~~~gt~~~~-~~vd~~~~----g~~~~~~~~~L~~~g---I~v~~~- 426 (520)
..+|.+..++..++++++.+.|.+ . |++++... .+.. ..+.+... ..+...+--.+...| ..+...
T Consensus 313 ~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~-~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~ 391 (450)
T 3bc8_A 313 CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP-HNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLG 391 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT-TCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCc-cCCCcceeecccccccccCCCceeEEEecCCCCccceeeecc
Confidence 345677777778889999998866 3 77776421 1111 12222211 123333333333333 222100
Q ss_pred --------CCC--C-CCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 427 --------SVP--G-DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 427 --------~~P--g-~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
.+. | ...-....+|=+ +++.|.+++|++++.+.+++++..
T Consensus 392 ~~~~~~~~~l~~~gi~~E~~~~~~i~~----~~sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 392 NVQTVSGHTFRGFMSHADNYPCAYLNA----AAAIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp CEEEETTEEEETTTTTSSCCSSCEEEE----ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHcCCeeecCCCCcEEE----EecCCCCHHHHHHHHHHHHHHHHH
Confidence 000 0 000111233333 455788999999999999998654
No 222
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.74 E-value=2e-16 Score=166.29 Aligned_cols=325 Identities=15% Similarity=0.132 Sum_probs=189.3
Q ss_pred ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008 94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 168 (520)
Q Consensus 94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG 168 (520)
..|++..+. + +.+|.|.+++...+.+....+|+ .+...+ .+++++++++ ..++ .+..+||
T Consensus 57 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~-------~~~~~~----l~~~la~~~~-~~~~---v~~~~sg 121 (434)
T 2epj_A 57 RIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAP-------GEAEVL----LAEKILGYVK-RGGM---IRFVNSG 121 (434)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSC-------CHHHHH----HHHHHHHHHC-TTCE---EEEESSH
T ss_pred EEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCCC-------CHHHHH----HHHHHHHhCC-CCCE---EEEeCCH
Confidence 346665543 2 25799999998887653211221 222333 3467888884 3332 2345677
Q ss_pred HHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccc------cccccce----EEEEEcccCCCCCCCCHHHHHH
Q 010008 169 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRR------VSGTSIY----FESMPYRLDESTGLVDYDMLEK 236 (520)
Q Consensus 169 s~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~------v~~~g~~----~~~v~~~~d~~~~~iD~d~le~ 236 (520)
++|+.+++.+. +.++|+|+++++.|.|............ ....|.. .+++.++. .|+++|++
T Consensus 122 seA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~ 195 (434)
T 2epj_A 122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY------NDVEALER 195 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET------TCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC------CCHHHHHH
Confidence 89999988861 3356788888887654321110000000 0001110 01222221 38999999
Q ss_pred Hhhhc--CCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCc
Q 010008 237 TAILF--RPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHK 305 (520)
Q Consensus 237 ~i~~~--~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK 305 (520)
++++. ++++|++...+++ + ..+ +++|+++|+++|++||+|++|. |+ ..+.. . ..+. ..|++ |++|
T Consensus 196 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK 271 (434)
T 2epj_A 196 VFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF-RLGLEGAQGYFNIEGDII--VLGK 271 (434)
T ss_dssp HHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT-TSSTTHHHHHHTCCCSEE--EEEG
T ss_pred HHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce-eCCcchhhHHhCCCCCee--eecc
Confidence 98742 6778888754443 3 567 9999999999999999999976 65 22210 0 0001 35776 5569
Q ss_pred ccC-CCCceEEEeeCCCcchhhHHHhhcccC--CC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008 306 SLR-GPRGGMIFFKKDPVLGVELESAINNAV--FP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL 381 (520)
Q Consensus 306 ~l~-GprgG~I~~~~~~~~~~~l~~~i~~~~--~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L 381 (520)
++. |.++|++++++ ++.+.+.... +. +..++ +...+++...+|+.+.++ ++.+++.++++++.+.|
T Consensus 272 ~l~~G~~~G~v~~~~------~~~~~l~~~~~~~~~~t~~~-~~~~~aa~~a~l~~~~~~---~~~~~~~~~~~~l~~~L 341 (434)
T 2epj_A 272 IIGGGFPVGAVAGSR------EVMSLLTPQGKVFNAGTFNA-HPITMAAGLATLKALEEE---PVYSVSREAAKALEEAA 341 (434)
T ss_dssp GGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTTT-CHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHH
T ss_pred hhcCCcceeeeeecH------HHHHhhccCCCcccCCCCCc-CHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Confidence 985 46889999987 6766665411 11 12222 333444444466655332 34566777788888887
Q ss_pred HHC----CCEE-ecCCCCCeeEEEEecCCC------------CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008 382 VEL----GYKL-VSGGSDNHLVLVDLRPMG------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444 (520)
Q Consensus 382 ~~~----G~~v-~~~gt~~~~~~vd~~~~g------------~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~ 444 (520)
.+. ++.. +.+ ...++++++.... .+...+.+.|.+.||.+. |+. ...+|++.
T Consensus 342 ~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~-----~~~~~~~~ 410 (434)
T 2epj_A 342 SEVLDRTGLPYTINR--VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIA----PSN-----LEAVFTGL 410 (434)
T ss_dssp HHHHHHHTCCEEEEE--ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECC----SST-----TSCEECCT
T ss_pred HHHHhhCCCcEEEEE--eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEe----ccC-----CCcEEEec
Confidence 653 5532 222 2345677764311 123557777888999984 332 12466542
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 445 PAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 445 ~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
..+++|++++.+.|+++++.
T Consensus 411 ------~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 411 ------PHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp ------TCSHHHHHHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHHHHHHHH
Confidence 25689999999999988764
No 223
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.74 E-value=6.4e-16 Score=163.67 Aligned_cols=328 Identities=13% Similarity=0.027 Sum_probs=183.4
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhhC--C
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAIL--K 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~all--~ 181 (520)
.+|.|.+|+...+.... . |....|. .+... ..+++++++++.+ .++ .+..+||++|+.+++..+. .
T Consensus 81 ~~p~v~~A~~~~~~~~~-~-~~~~~~~--~~~~~----~la~~l~~~~~~~~~~~---v~~~~sGseA~~~alk~a~~~~ 149 (453)
T 4ffc_A 81 SHPAVAAAIADQATHFT-H-TCFMVTP--YEQYV----QVAELLNALTPGDHDKR---TALFNSGAEAVENAIKVARLAT 149 (453)
T ss_dssp TCHHHHHHHHHHHHHCS-C-CTTTTSC--CHHHH----HHHHHHHHHSSCSSCEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-c-cccCcCC--CHHHH----HHHHHHHHhCCCCCCcE---EEEeCcHHHHHHHHHHHHHHhc
Confidence 48999999988775431 1 2111111 22222 3347888888754 232 2345678899999986653 2
Q ss_pred CCCEEEEcCCCCCcccccccc------ccccccccccceEEEEEcccCC-CCCCCC--------HHHHHHHhhhcCCcEE
Q 010008 182 PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDE-STGLVD--------YDMLEKTAILFRPKLI 246 (520)
Q Consensus 182 pGD~Vl~~~~~~~ghls~g~~------~~~~~v~~~g~~~~~v~~~~d~-~~~~iD--------~d~le~~i~~~~pklI 246 (520)
.+++|++.++.|.|+...... .+..........+..++++... +....+ .+.|++.+...++.+|
T Consensus 150 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aav 229 (453)
T 4ffc_A 150 GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAI 229 (453)
T ss_dssp CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 458999999877544211000 0000000011122334433211 111222 3566666654344566
Q ss_pred EEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc-CCCCceEE
Q 010008 247 IAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGPRGGMI 315 (520)
Q Consensus 247 i~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l-~GprgG~I 315 (520)
++...+. ++ ..+ +++|+++|++||++||+|++|. |+...+.. ..+. ..|++++ +|++ .|+|.|++
T Consensus 230 i~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~-~a~~~~~~~pdi~t~--sK~~~~G~~~G~~ 305 (453)
T 4ffc_A 230 IIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT-GFARTGAW-FASEHEGIVPDIVTM--AKGIAGGMPLSAV 305 (453)
T ss_dssp EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEEEE--CGGGGTTSSCEEE
T ss_pred EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCccccc-chhhhcCCCcchHhh--hhhhcCCcCeEEE
Confidence 6653322 22 333 8999999999999999999964 44322211 0111 2466654 5998 56788999
Q ss_pred EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----C-CCEEec
Q 010008 316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----L-GYKLVS 390 (520)
Q Consensus 316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~-G~~v~~ 390 (520)
++++ ++.+.+......+..+++...+.+++ ++|+.+..+ ++.+++.++.+++.+.|.+ . ++..+.
T Consensus 306 ~~~~------~i~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 375 (453)
T 4ffc_A 306 TGRA------ELMDAVYAGGLGGTYGGNPVTCAAAV-AALGVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEVR 375 (453)
T ss_dssp EEEH------HHHTTSCTTSSCCSSSSCHHHHHHHH-HHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EECH------HHHhhhcccCcCCCCCcCHHHHHHHH-HHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 9988 67777665443344444444444444 356654332 3445555566666666654 2 233332
Q ss_pred CCCCCeeEEEEecC------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008 391 GGSDNHLVLVDLRP------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464 (520)
Q Consensus 391 ~gt~~~~~~vd~~~------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i 464 (520)
+ ...++++++.. .......+.+.|.+.||.+. |+.. ..+.+|+..+.. .+++|++++++.|
T Consensus 376 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~~---~~~~iRi~~~~~----~t~e~i~~~l~~l 442 (453)
T 4ffc_A 376 G--RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLIL----TCGT---FGNVIRLLPPLV----IGDDLLDEGITAL 442 (453)
T ss_dssp E--ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECC----EECT---TSCEEEECCCTT----CCHHHHHHHHHHH
T ss_pred e--eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEe----cCCC---CCCEEEEECCCC----CCHHHHHHHHHHH
Confidence 2 12455666632 11123457777888999984 3321 236899986644 3589999999999
Q ss_pred HHHHHH
Q 010008 465 HEGVEI 470 (520)
Q Consensus 465 ~~~l~~ 470 (520)
+++++.
T Consensus 443 ~~~l~~ 448 (453)
T 4ffc_A 443 SDIIRA 448 (453)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 224
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.73 E-value=3.4e-16 Score=166.69 Aligned_cols=320 Identities=13% Similarity=0.026 Sum_probs=189.1
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--- 181 (520)
.+|.|.+|+...+.+. ...+...+| ..+...+ ..++++++++.+.+. .+..+||++||..++..+.+
T Consensus 72 ~~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~~----lae~l~~~~~~~~~~---v~~~~sGseA~~~aik~a~~~~~ 141 (472)
T 3hmu_A 72 GRDELAEVAARQMREL-PYYNTFFKT--THVPAIA----LAQKLAELAPGDLNH---VFFAGGGSEANDTNIRMVRTYWQ 141 (472)
T ss_dssp CCHHHHHHHHHHHHHC-SCCCSSSSE--ECHHHHH----HHHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-ccccccccc--CCHHHHH----HHHHHHHhCCCCCCE---EEEeCCHHHHHHHHHHHHHHHHH
Confidence 4799999998877542 112222111 1222222 336788888765542 23356788999999988764
Q ss_pred -----CCCEEEEcCCCCCcccccccccccccccccc-----------ceEEEEEccc--CCCCCCCC--------HHHHH
Q 010008 182 -----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-----------IYFESMPYRL--DESTGLVD--------YDMLE 235 (520)
Q Consensus 182 -----pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g-----------~~~~~v~~~~--d~~~~~iD--------~d~le 235 (520)
++++|++.++.|.|... + .....+ ..+..++++. +..++ .| +++|+
T Consensus 142 ~~g~~~~~~ii~~~~~yHg~t~-~------~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le 213 (472)
T 3hmu_A 142 NKGQPEKTVIISRKNAYHGSTV-A------SSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELE 213 (472)
T ss_dssp HTTCTTCCEEEEETTCCCCSSH-H------HHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEEcCcCCCccH-H------hhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHH
Confidence 46899999987644311 1 011111 0123333322 10112 34 78888
Q ss_pred HHhhh---cCCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEecc
Q 010008 236 KTAIL---FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTT 303 (520)
Q Consensus 236 ~~i~~---~~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~ 303 (520)
++++. .++++|++...++++ ..+ +++|+++|+++|++||+|++|. |+...|... ..+. ..|++++|
T Consensus 214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~a~~~~~v~pdi~t~s- 291 (472)
T 3hmu_A 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC-GFGRTGNWFGTQTMGIRPHIMTIA- 291 (472)
T ss_dssp HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEEC-
T ss_pred HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-CCcccCccchhHHhCCCCceeeec-
Confidence 88863 256778887544433 444 8999999999999999999964 443222100 0001 35787654
Q ss_pred CcccCC--CCceEEEeeCCCcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHH-HHHHHHH
Q 010008 304 HKSLRG--PRGGMIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRALA 378 (520)
Q Consensus 304 hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~-~na~~l~ 378 (520)
|+|+| ++.|++++++ ++.+.++.. ...+..+++.....|++ ++|+.+..+ ++.+++. ++.+++.
T Consensus 292 -K~l~gg~~plG~v~~~~------~i~~~~~~~~~~~~~t~~~np~a~aAa~-aaL~~~~~~---~~~~~~~~~~~~~l~ 360 (472)
T 3hmu_A 292 -KGLSSGYAPIGGSIVCD------EVAHVIGKDEFNHGYTYSGHPVAAAVAL-ENLRILEEE---NILDHVRNVAAPYLK 360 (472)
T ss_dssp -GGGTTTSSCCEEEEEEH------HHHHHHTTSCBCCCCTTTTCHHHHHHHH-HHHHHHHHT---THHHHHHHTHHHHHH
T ss_pred -hhhhcCCcceEEEEECH------HHHHhcccCCccccCCCCCCHHHHHHHH-HHHHHHHHh---HHHHHHHHHHHHHHH
Confidence 99966 7889999988 677776322 11222334334333443 467655332 3456666 7777888
Q ss_pred HHHHHC----CCEEecCCCCCeeEEEEecCCCC-------C----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEc
Q 010008 379 SRLVEL----GYKLVSGGSDNHLVLVDLRPMGI-------D----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIG 443 (520)
Q Consensus 379 ~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~-------~----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig 443 (520)
+.|++. ++..+.+ ...++.+++..... + ...+.+.|.+.||.+.. + + +.|||+
T Consensus 361 ~~L~~l~~~~~v~~vr~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~-----g-~~iRi~ 428 (472)
T 3hmu_A 361 EKWEALTDHPLVGEAKI--VGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRH----V-----G-DRMIIS 428 (472)
T ss_dssp HHHHGGGGSTTEEEEEE--ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEE----E-----T-TEEEEC
T ss_pred HHHHHHhcCCCeEEEEe--cCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEe----c-----C-CEEEEE
Confidence 888653 1222222 12345566542110 0 34577778888998842 2 1 689998
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 444 SPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 444 ~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
.+.. .+++|++++++.|+++++..
T Consensus 429 p~~~----~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 429 PPLV----ITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp CCTT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CCHHHHHHHHHHHHHHHHHH
Confidence 6644 45899999999999988654
No 225
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.73 E-value=3.5e-16 Score=165.43 Aligned_cols=313 Identities=13% Similarity=0.087 Sum_probs=185.0
Q ss_pred ChHHHH-H-HHhh---hhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-CCCCCCceeeecCChHHHHHHHHHh
Q 010008 105 TSRAVM-E-AVGS---CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTA 178 (520)
Q Consensus 105 ~~~~V~-e-a~~s---~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg-~~~~~~~~~V~~~sGs~A~~~~l~a 178 (520)
.+|.|. + |+.. .+... .. +. .+|. .+...++ .++++++++ .+.++ .+...||++||..++.+
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~-~~-~~-~~~~--~~~~~~l----a~~la~~~~~~~~~~---v~~~~~gseA~~~aik~ 138 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALN-KP-SN-SDVY--SVAMARF----VETFARVLGDPALPH---LFFVEGGALAVENALKA 138 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTC-CC-CT-TTCC--CHHHHHH----HHHHHHHHCCTTCCE---EEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhc-CC-CC-cccC--CHHHHHH----HHHHHHhcCCCCCCE---EEEeCchHHHHHHHHHH
Confidence 478999 8 8887 55432 11 11 1221 2222333 357888887 34432 23346677999988865
Q ss_pred hC---C----------C-CCEEEEcCCCCCccccccccccccccccccc------eE-----EEEEcccCCC-CC-----
Q 010008 179 IL---K----------P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------YF-----ESMPYRLDES-TG----- 227 (520)
Q Consensus 179 ll---~----------p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------~~-----~~v~~~~d~~-~~----- 227 (520)
+. + | ||+|+++++.|.|..... +...+. .+ .++.++.+.. ..
T Consensus 139 a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 211 (449)
T 2cjg_A 139 AFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT-------LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA 211 (449)
T ss_dssp HHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG-------GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHH
T ss_pred HHHHhcccccccccccCCCCEEEEECCCcCCcccch-------hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccc
Confidence 42 2 2 899999998775542211 111110 01 2334443310 01
Q ss_pred ---CCCHHHHHHHhhh--cCCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---
Q 010008 228 ---LVDYDMLEKTAIL--FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--- 293 (520)
Q Consensus 228 ---~iD~d~le~~i~~--~~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~--- 293 (520)
..|+++|+++++. .++++|+++..+++ + ..+ +++|+++|+++|++||+|++|. |+...+.. ..+
T Consensus 212 ~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~-~~~~~~ 289 (449)
T 2cjg_A 212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTA-WAYQQL 289 (449)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSS-STHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcc-eeeccc
Confidence 2466778888863 26788888765454 3 455 9999999999999999999976 54333321 011
Q ss_pred C-cccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhc-----ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008 294 K-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN-----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 367 (520)
Q Consensus 294 ~-~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~-----~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~ 367 (520)
. ..|+++ ++|+| +.|++++++ ++.+.+. .....+..++ +....+|..++|+.+.+ +++.
T Consensus 290 ~~~~di~t--~sK~l---~iG~~~~~~------~~~~~l~~~~~~~~~~~~t~~~-n~~~~~aa~aal~~~~~---~~~~ 354 (449)
T 2cjg_A 290 DVAPDIVA--FGKKT---QVCGVMAGR------RVDEVADNVFAVPSRLNSTWGG-NLTDMVRARRILEVIEA---EGLF 354 (449)
T ss_dssp TCCCSEEE--ECGGG---SSEEEEECG------GGGGSTTCTTTSTTSSCCSSSS-CHHHHHHHHHHHHHHHH---HTHH
T ss_pred CCCceEEE--ecCcc---cEEEEEECH------HHhhhhhhcccCCcccccCCCC-CHHHHHHHHHHHHHHHh---ccHH
Confidence 1 357775 55998 578888887 5655422 1111122233 33344444456765543 2356
Q ss_pred HHHHHHHHHHHHHHHHC-----C-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEE
Q 010008 368 NKVVSNCRALASRLVEL-----G-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIR 441 (520)
Q Consensus 368 ~~i~~na~~l~~~L~~~-----G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giR 441 (520)
+++.++++++.+.|.+. + +..+.+ ...++++++... .+..++.+.|.+.||.+.. + ..+.||
T Consensus 355 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~--~g~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~----~-----g~~~iR 422 (449)
T 2cjg_A 355 ERAVQHGKYLRARLDELAADFPAVVLDPRG--RGLMCAFSLPTT-ADRDELIRQLWQRAVIVLP----A-----GADTVR 422 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSEEEEE--ETTEEEEECSSH-HHHHHHHHHHHHTTEECEE----E-----TTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceeeEee--ccEEEEEEECCh-HHHHHHHHHHHHCCeEEec----C-----CCCEEE
Confidence 77777888888888752 2 433332 234556676421 1235577777789999843 2 247899
Q ss_pred EccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 442 IGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 442 ig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
++.+.. .+++|++++++.|+++++
T Consensus 423 i~~~~~----~t~e~i~~~l~~l~~~l~ 446 (449)
T 2cjg_A 423 FRPPLT----VSTAEIDAAIAAVRSALP 446 (449)
T ss_dssp ECCCTT----CCHHHHHHHHHHHHHHHH
T ss_pred EECCCC----CCHHHHHHHHHHHHHHHH
Confidence 986643 458999999999998875
No 226
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.73 E-value=1.2e-15 Score=161.42 Aligned_cols=327 Identities=12% Similarity=0.029 Sum_probs=182.1
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhhCC--
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK-- 181 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~all~-- 181 (520)
.+|.|.+|+...+... .. |....| ..+... ...++++++++.+ .++ .+..+||++|+.+++..+..
T Consensus 78 ~~p~v~~A~~~~~~~~-~~-~~~~~~--~~~~~~----~la~~l~~~~~~~~~~~---v~~~~sGseA~~~Alk~a~~~~ 146 (451)
T 3oks_A 78 SAPKVVEAVRSQVGDF-TH-TCFMVT--PYEGYV----AVCEQLNRLTPVRGDKR---SALFNSGSEAVENAVKIARSHT 146 (451)
T ss_dssp TCHHHHHHHHHHHTTC-SC-CTTTTS--CCHHHH----HHHHHHHHHSSCCSSEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cc-ccCCcc--CCHHHH----HHHHHHHHhCCcCCCCE---EEEeCcHHHHHHHHHHHHHHhc
Confidence 4899999998877532 11 111111 122222 2346788888754 222 24456788999999876643
Q ss_pred CCCEEEEcCCCCCcccccccc------ccccccccccceEEEEEccc---------CCCC-CCCCHHHHHHHhh----hc
Q 010008 182 PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRL---------DEST-GLVDYDMLEKTAI----LF 241 (520)
Q Consensus 182 pGD~Vl~~~~~~~ghls~g~~------~~~~~v~~~g~~~~~v~~~~---------d~~~-~~iD~d~le~~i~----~~ 241 (520)
.+++|++.++.|.|+...... .+..........+..++++. +.+. ...+++.+++.++ ..
T Consensus 147 g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (451)
T 3oks_A 147 HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGAD 226 (451)
T ss_dssp CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGG
T ss_pred CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCC
Confidence 448999998877554211000 00000000111223344331 1000 0113444444443 23
Q ss_pred CCcEEEEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc-CCC
Q 010008 242 RPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGP 310 (520)
Q Consensus 242 ~pklIi~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l-~Gp 310 (520)
++++|++...+. ++ ..+ +++|+++|++||++||+|++|. |+...+.. ..+. ..|++ |++|++ .|+
T Consensus 227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~-~~~~~~~~~pdi~--t~sK~l~~G~ 302 (451)
T 3oks_A 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAM-FACEHEGIDPDLI--VTAKGIAGGL 302 (451)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSS-SGGGGGTCCCSEE--EECGGGGTTS
T ss_pred CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccc-hhhhhcCCCCCee--eehhhhhCCc
Confidence 456666654332 22 333 8999999999999999999964 54332211 1111 35777 455998 567
Q ss_pred CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----C-C
Q 010008 311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----L-G 385 (520)
Q Consensus 311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~-G 385 (520)
|.|++++++ ++.+.+......+..+++...+.+++ .+|+.+... ++.+++.++.+++.+.|.+ . .
T Consensus 303 ~iG~v~~~~------~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~ 372 (451)
T 3oks_A 303 PLSAVTGRA------EIMDSPHVSGLGGTYGGNPIACAAAL-ATIETIESE---GLVARAQQIEKIMKDRLGRLQAEDDR 372 (451)
T ss_dssp SCEEEEEEH------HHHTCSCTTSBCCSSSSCHHHHHHHH-HHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ceEEEEECH------HHHhhhcCCCcCCCCCCCHHHHHHHH-HHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 889999987 67776654433344444444444444 356654332 3455566666666666654 2 2
Q ss_pred CEEecCCCCCeeEEEEecC------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008 386 YKLVSGGSDNHLVLVDLRP------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA 459 (520)
Q Consensus 386 ~~v~~~gt~~~~~~vd~~~------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~ 459 (520)
+..+.+ ...++++++.. .......+.+.|.+.||.+.. +.. ..+.+||..+.. .+++|+++
T Consensus 373 ~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~~---~~~~iRi~~~~~----~t~e~i~~ 439 (451)
T 3oks_A 373 IGDVRG--RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLS----CGT---YGNVVRFLPPLS----IGDDLLNE 439 (451)
T ss_dssp EEEEEE--ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEE----ECT---TSCEEEECCCTT----CCHHHHHH
T ss_pred eEEEEE--eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEec----CCC---CCCEEEEECCCC----CCHHHHHH
Confidence 222222 12355666632 111235577778889999843 221 136899986644 35899999
Q ss_pred HHHHHHHHHH
Q 010008 460 IADFIHEGVE 469 (520)
Q Consensus 460 la~~i~~~l~ 469 (520)
+.+.|+++++
T Consensus 440 ~l~~l~~~l~ 449 (451)
T 3oks_A 440 GLDVLEEVLR 449 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 227
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.72 E-value=4.6e-16 Score=162.95 Aligned_cols=320 Identities=15% Similarity=0.066 Sum_probs=185.6
Q ss_pred cceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008 95 SLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169 (520)
Q Consensus 95 ~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs 169 (520)
.|++..+. + +.+|.|.+|+...+.+....+|+ .+...+ ..++++++++ ..++ .+..+||+
T Consensus 54 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~----l~~~l~~~~~-~~~~---v~~~~~g~ 118 (424)
T 2e7u_A 54 YLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAP-------SPLEVA----LAKKVKRAYP-FVDL---VRFVNSGT 118 (424)
T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSC-------CHHHHH----HHHHHHHHCT-TCCE---EEEESSHH
T ss_pred EEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCC-------CHHHHH----HHHHHHHhCC-CCCE---EEEeCCHH
Confidence 46766553 2 35899999998887652111221 122233 3467888885 4432 23356677
Q ss_pred HHHHHHHHh---hCCCCCEEEEcCCCCCcccccccccccc---c---cccccce----EEEEEcccCCCCCCCCHHHHHH
Q 010008 170 PANFEVYTA---ILKPHDRIMGLDLPHGGHLSHGFMTPKR---R---VSGTSIY----FESMPYRLDESTGLVDYDMLEK 236 (520)
Q Consensus 170 ~A~~~~l~a---ll~pGD~Vl~~~~~~~ghls~g~~~~~~---~---v~~~g~~----~~~v~~~~d~~~~~iD~d~le~ 236 (520)
+|+.+++.. +. ++|.|++.++.|.|+.......... . ....|.. ..++.++ ..|+++|++
T Consensus 119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~ 191 (424)
T 2e7u_A 119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE------YNDPEGLRE 191 (424)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEEC------TTCHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCC------CCCHHHHHH
Confidence 999988875 44 4588888888765432111000000 0 0001110 0122222 148999999
Q ss_pred Hhhh--cCCcEEEEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCc
Q 010008 237 TAIL--FRPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHK 305 (520)
Q Consensus 237 ~i~~--~~pklIi~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK 305 (520)
+++. .++++|+++..+. .+ ..+ +++|+++ +++|++||+|++|. |+ ..+.. . ..+. ..|++ |++|
T Consensus 192 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK 266 (424)
T 2e7u_A 192 VLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF-RLAFGGATELLGLKPDLV--TLGK 266 (424)
T ss_dssp HHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEE--EECG
T ss_pred HHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc-ccchhHHHHHhCCCcchh--hhhh
Confidence 8874 2567777764332 23 566 9999999 99999999999976 65 22210 0 0001 35766 6679
Q ss_pred ccC-CCCceEEEeeCCCcchhhHHHhhcc-cC-CC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008 306 SLR-GPRGGMIFFKKDPVLGVELESAINN-AV-FP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL 381 (520)
Q Consensus 306 ~l~-GprgG~I~~~~~~~~~~~l~~~i~~-~~-~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L 381 (520)
++. |.++|++++++ ++.+.+.. .. +. +..++ +...+++..++++.+.+ .+++.+++.++++++.+.|
T Consensus 267 ~l~~G~~~G~~~~~~------~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L 337 (424)
T 2e7u_A 267 ILGGGLPAAAYAGRR------EIMEKVAPLGPVYQAGTLSG-NPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGL 337 (424)
T ss_dssp GGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTCS-CHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHH
T ss_pred hhhCCcceEEEEEcH------HHHhhhcccCCcccCCCCCC-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Confidence 985 56889999987 67776654 11 11 12222 33334444446665432 1346677788888888888
Q ss_pred HHC----CCEE-ecCCCCCeeEEEEecCCC------------CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008 382 VEL----GYKL-VSGGSDNHLVLVDLRPMG------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444 (520)
Q Consensus 382 ~~~----G~~v-~~~gt~~~~~~vd~~~~g------------~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~ 444 (520)
++. ++.. +.+ ...++++++.... .+...+.+.|.+.||.+.. +. ...+|++.
T Consensus 338 ~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~-----~~~~~~~~ 406 (424)
T 2e7u_A 338 KEVLKEKGLPHTVNR--VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPP----SN-----FEAAFLSV 406 (424)
T ss_dssp HHHHHHTTCCCEEEE--ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCS----SS-----SSCEECCT
T ss_pred HHHHHhCCCceEEEe--eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEec----cC-----CCceEeec
Confidence 663 5531 222 2346777775311 1134567777789999843 32 12466542
Q ss_pred CCccccCCCHHHHHHHHHHHHHH
Q 010008 445 PAMTTRGFSEKEFVAIADFIHEG 467 (520)
Q Consensus 445 ~~~tt~g~~~~d~~~la~~i~~~ 467 (520)
..+++|++++++.|+++
T Consensus 407 ------~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 407 ------AHREEDVEKTLEALRKA 423 (424)
T ss_dssp ------TCCHHHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHHHHh
Confidence 25689999999998775
No 228
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.72 E-value=7.5e-15 Score=153.91 Aligned_cols=325 Identities=14% Similarity=0.086 Sum_probs=181.9
Q ss_pred ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008 94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 168 (520)
Q Consensus 94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG 168 (520)
..|++.++- + ..+|.|.+|+...+.+....+||. +...++ .++++++++ ..++ .+...||
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~-------~~~~~l----a~~l~~~~~-~~~~---v~~~~sG 118 (429)
T 4e77_A 54 AYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPT-------EMEVKM----AQLVTDLVP-TMDM---VRMVNSG 118 (429)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCC-------HHHHHH----HHHHHHHST-TCSE---EEEESSH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCC-------HHHHHH----HHHHHhhCC-CCCE---EEEeCcH
Confidence 346665543 2 258999999998876543223332 222233 367888886 4432 2445678
Q ss_pred HHHHHHHHHhhC--CCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc--------CCC---CCCCCHHHHH
Q 010008 169 SPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL--------DES---TGLVDYDMLE 235 (520)
Q Consensus 169 s~A~~~~l~all--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~--------d~~---~~~iD~d~le 235 (520)
++|+..++.... ..++.|++.++.|.|..... +...+........+. ... -...|+++|+
T Consensus 119 sea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 191 (429)
T 4e77_A 119 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADCL-------LVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVR 191 (429)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCC-------------------------CCCTTSCGGGGTTEEEECTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhh-------hhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHH
Confidence 899998887532 35678888887654332100 000000000000000 000 0012899999
Q ss_pred HHhhhc--CCcEEEEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccC
Q 010008 236 KTAILF--RPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTH 304 (520)
Q Consensus 236 ~~i~~~--~pklIi~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~h 304 (520)
+++++. ++++|++...++ ++ ..+ +++|+++|+++|++||+|++|. |+ ..+... ..+. ..|++ |++
T Consensus 192 ~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~--t~s 267 (429)
T 4e77_A 192 QAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLT--CLG 267 (429)
T ss_dssp HHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEE--EEE
T ss_pred HHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCee--eec
Confidence 999753 456677654332 23 445 8999999999999999999976 54 222110 0011 34776 555
Q ss_pred ccc-CCCCceEEEeeCCCcchhhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008 305 KSL-RGPRGGMIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL 381 (520)
Q Consensus 305 K~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L 381 (520)
|++ +|+|.|++++++ ++.+.+.... +.+...+.+...+++...+|+.+..+ ++.+++.++.+.+.+.|
T Consensus 268 K~~~~G~~~G~~~~~~------~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L 338 (429)
T 4e77_A 268 KIIGGGMPVGAFGGRR------EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQV---GVYETLTELTDSLATGL 338 (429)
T ss_dssp GGGGTTSCCEEEEECH------HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECH------HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Confidence 998 467889999987 6766665321 11111123344444444567766443 34556666677777766
Q ss_pred HH----CCCEEecCCCCCeeEEEEecCCC-C------------CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008 382 VE----LGYKLVSGGSDNHLVLVDLRPMG-I------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444 (520)
Q Consensus 382 ~~----~G~~v~~~gt~~~~~~vd~~~~g-~------------~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~ 444 (520)
.+ .++.....+ ...++++.+.... . ....+.+.|.+.||.+.. +. ...+|++.
T Consensus 339 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~~-----~~~~~~~~ 408 (429)
T 4e77_A 339 RHAAKEENIPLVVNH-VGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAP----SA-----FEAGFMSL 408 (429)
T ss_dssp HHHHHHTTCCCEEEE-ETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCS----ST-----TSCEECCT
T ss_pred HHHHHhCCCceEEEE-eeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEee----cC-----CCCEEEec
Confidence 54 344322211 2345666664320 0 115567778888999843 21 23466642
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHH
Q 010008 445 PAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 445 ~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
..+++|++++++.|+++++
T Consensus 409 ------~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 409 ------AHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp ------TCCHHHHHHHHHHHHHHHT
T ss_pred ------cCCHHHHHHHHHHHHHHHH
Confidence 2568999999999998764
No 229
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.72 E-value=1.1e-15 Score=161.48 Aligned_cols=322 Identities=13% Similarity=0.076 Sum_probs=184.5
Q ss_pred ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008 94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 168 (520)
Q Consensus 94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG 168 (520)
..|++..+. + +.+|.|.+++...+.+....|| .++++....++++++++ ..++ .+..++|
T Consensus 58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~-----------~~~~~~~la~~l~~~~~-~~~~---v~~~~gg 122 (453)
T 2cy8_A 58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAA-----------SHPLEVRWAERIVAAFP-SIRK---LRFTGSG 122 (453)
T ss_dssp EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSSCS-----------SCHHHHHHHHHHHHHCT-TCSE---EEEESCH
T ss_pred EEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCCCC-----------CCHHHHHHHHHHHhhCC-CCCE---EEEeCCH
Confidence 346665553 2 3689999999888754211111 12444455678888886 4442 2345677
Q ss_pred HHHHHHHHHh---hCCCCCEEEEcCCCCCcccccccccccc---ccccccceE----EEEEcccCCCCCCCCHHHHHHHh
Q 010008 169 SPANFEVYTA---ILKPHDRIMGLDLPHGGHLSHGFMTPKR---RVSGTSIYF----ESMPYRLDESTGLVDYDMLEKTA 238 (520)
Q Consensus 169 s~A~~~~l~a---ll~pGD~Vl~~~~~~~ghls~g~~~~~~---~v~~~g~~~----~~v~~~~d~~~~~iD~d~le~~i 238 (520)
++|+.+++.+ +.+ +|+|++.++.|.|........... .....|... .++.++ ..|+++|++++
T Consensus 123 ~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~l 195 (453)
T 2cy8_A 123 TETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR------PDDIEGMREVF 195 (453)
T ss_dssp HHHHHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEEC------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC------CCCHHHHHHHH
Confidence 7999998887 555 478888887764432110000000 000011100 011211 14899999998
Q ss_pred hhc--CCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCccc
Q 010008 239 ILF--RPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL 307 (520)
Q Consensus 239 ~~~--~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l 307 (520)
++. ++++|+++..+++ + ..+ +++|+++|++||++||+|++|. |+ ..+... ..+. ..|++ |++|++
T Consensus 196 ~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l 271 (453)
T 2cy8_A 196 ANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKAS 271 (453)
T ss_dssp HHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGGG
T ss_pred HhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChhh
Confidence 742 5778887654333 3 456 9999999999999999999986 65 322100 0011 35776 566998
Q ss_pred C-CCCceEEEeeCCCcchhhHHHhhcc---c-CCC-CCCCCChHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHH
Q 010008 308 R-GPRGGMIFFKKDPVLGVELESAINN---A-VFP-GLQGGPHNHTIGGLAVCLKH-AQSPEFKVYQNKVVSNCRALASR 380 (520)
Q Consensus 308 ~-GprgG~I~~~~~~~~~~~l~~~i~~---~-~~p-~~~g~p~~~~iaala~al~~-~~~~~~~~~~~~i~~na~~l~~~ 380 (520)
. |+++|++++++ ++.+.+.. . .+. +..++ +...+++...+++. + .+ ++.+++.++++.+.+.
T Consensus 272 ~~G~~~G~v~~~~------~~~~~l~~~~~~~~~~~~t~~~-n~~~~aa~~aal~~~~-~~---~~~~~~~~~~~~l~~~ 340 (453)
T 2cy8_A 272 AGGLPGGILGGRE------DVMGVLSRGSDRKVLHQGTFTG-NPITAAAAIAAIDTIL-ED---DVCAKINDLGQFAREA 340 (453)
T ss_dssp GTTSSCEEEEECH------HHHTTSSSCC---------CCC-CHHHHHHHHHHHHHHH-HT---THHHHHHHHHHHHHHH
T ss_pred hCCcceEEEechH------HHHHHhccccCCCceeCCCCCC-CHHHHHHHHHHHHHHh-hh---hHHHHHHHHHHHHHHH
Confidence 5 57899999987 67666654 1 111 11222 33344444446765 4 22 3456677778888887
Q ss_pred HHHC----CCEE-ecCCCCCeeEEEEecC-----C-------------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCC
Q 010008 381 LVEL----GYKL-VSGGSDNHLVLVDLRP-----M-------------GIDGARVEKILDMASITLNKNSVPGDKSALVP 437 (520)
Q Consensus 381 L~~~----G~~v-~~~gt~~~~~~vd~~~-----~-------------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~ 437 (520)
|.+. ++.. +.+ ...++++++.. . ..+..++.+.|.+.||.+. |+
T Consensus 341 L~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~----~~------- 407 (453)
T 2cy8_A 341 MNHLFARKGLNWLAYG--RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIG----GR------- 407 (453)
T ss_dssp HHHHHHHTTCCEEEEC--CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECB----TT-------
T ss_pred HHHHHhhCCCcEEEEE--eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEe----CC-------
Confidence 7652 4432 222 23466777753 1 0113557777778899982 32
Q ss_pred CEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 438 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 438 ~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
+.+|++. ..+++|++++.+.|+++++..
T Consensus 408 ~~~~l~~------~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 408 GSVFLSA------QHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp TEEECCT------TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEeec------cCCHHHHHHHHHHHHHHHHHH
Confidence 2366641 256899999999999988653
No 230
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.72 E-value=1.4e-16 Score=164.88 Aligned_cols=311 Identities=12% Similarity=0.122 Sum_probs=191.1
Q ss_pred cchhHH-HHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCC---C-CEEEEcCCCCCcccccccccccc
Q 010008 133 GNEYID-ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP---H-DRIMGLDLPHGGHLSHGFMTPKR 206 (520)
Q Consensus 133 g~~~~d-~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~p---G-D~Vl~~~~~~~ghls~g~~~~~~ 206 (520)
|...+- .-|.++.+|++.+ |++...- .+. .+|+ .++++++++.+++ | |+|+++...|-+.+ +
T Consensus 110 Gssll~~ltn~l~ld~L~~~-G~~~~~~--~fl-VnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~--------k 177 (501)
T 3hl2_A 110 GSSLLNKITNSLVLDIIKLA-GVHTVAN--CFV-VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------K 177 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCTTCCE--EEE-ESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------H
T ss_pred chHHHHHHHHHHHHHHHHHc-CCCCCCc--EEE-ECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH--------H
Confidence 444443 3355677777776 9985321 122 3444 5777777777664 4 99999887664432 3
Q ss_pred ccccccceEEEEEcc--cCCCCCCCCHHHHHHHhhhcCCc--EEEEc-CCCC-CC-CCCHHHHHHHHHHhCCEEEEechh
Q 010008 207 RVSGTSIYFESMPYR--LDESTGLVDYDMLEKTAILFRPK--LIIAG-ASAY-PR-DFDYPRMRQIADAVGALLMMDMAH 279 (520)
Q Consensus 207 ~v~~~g~~~~~v~~~--~d~~~~~iD~d~le~~i~~~~pk--lIi~~-~s~~-p~-~~d~~~i~~ia~~~g~~li~D~Ah 279 (520)
.+.+.|. +++.++ ++.+...+|+++++++++++.++ ++++. .+.| |+ ..|+++|+++|+++|+++++|+||
T Consensus 178 AliL~Gl--~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAh 255 (501)
T 3hl2_A 178 SMITAGF--EPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAY 255 (501)
T ss_dssp HHHHTTC--EEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTT
T ss_pred HHHHcCC--eEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcc
Confidence 4556676 444433 33345789999999999886433 44444 4445 44 579999999999999999999998
Q ss_pred hccccccccc-CCCCC-c-ccEEEeccCcccCCCCceEE-EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHH
Q 010008 280 ISGLVAASVV-ADPFK-Y-CDVVTTTTHKSLRGPRGGMI-FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCL 355 (520)
Q Consensus 280 ~~gli~~~~~-~~p~~-~-aDiv~~S~hK~l~GprgG~I-~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al 355 (520)
.+.+.+.... .+.+. + +|+++.|+||++..|-||.+ +.+++ ++.+++.. .+|+.+.+ ...+.+..++
T Consensus 256 Gah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~-----e~l~~~~~-~yPGr~S~---Spsldl~~tL 326 (501)
T 3hl2_A 256 GVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND-----SFIQEISK-MYPGRASA---SPSLDVLITL 326 (501)
T ss_dssp CTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHH-TSCSCBCS---HHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCH-----HHHHHHHH-hCCCCCCC---cHHHHHHHHH
Confidence 7655332211 12222 5 99999999999988877654 46654 66666644 46666533 1222333455
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHH----CCCEEecCCCCCeeE-EEEecCCCC----CHHHHHHHHhhcCeEEcCC
Q 010008 356 KHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLV-LVDLRPMGI----DGARVEKILDMASITLNKN 426 (520)
Q Consensus 356 ~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~gt~~~~~-~vd~~~~g~----~~~~~~~~L~~~gI~v~~~ 426 (520)
..+...+|++..++..+++++|.+.|++ .|-+++.. ..|.+. .+.+...+- +..++-..|-..+|.-...
T Consensus 327 L~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~-~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rv 405 (501)
T 3hl2_A 327 LSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHT-PHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV 405 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCC-TTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCC-CCCceeEEEecccccccccccHHHHHHHHHhcCCCccee
Confidence 5555577899999999999999999987 35565532 124433 234433211 1233445555555431111
Q ss_pred CCCCCC---------------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 427 SVPGDK---------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 427 ~~Pg~~---------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
-.||+. ..+...++-+. ...|++++|++.+.+.+++++...
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a----~aiG~~~~~v~~~~~~l~~~~~~~ 461 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAA----SAIGMKMQDVDLFIKRLDRCLKAV 461 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSSCCSSCEEEEE----CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCceEECCeeecCcccCCCCCCchHHHHH----HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 012220 11112233332 236999999999999999999755
No 231
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.60 E-value=1.6e-14 Score=153.66 Aligned_cols=316 Identities=14% Similarity=0.123 Sum_probs=177.9
Q ss_pred ChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008 105 TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 180 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--- 180 (520)
.+|.|.+|+...+... +..+ + . |+. ....++++...++++++++...++ .+...||++||..++..+.
T Consensus 80 ~~p~v~~A~~~~~~~~~~~~~-~--~-~~~-~~~~~l~~~la~~l~~~~~~~~~~---v~f~~sGseA~~~Aik~a~~~~ 151 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVSTFINR-P--A-LGI-LPPENFVEKLRESLLSVAPKGMSQ---LITMACGSCSNENAFKTIFMWY 151 (472)
T ss_dssp TCHHHHHHHHCGGGHHHHHCC-C--C-TTT-SCBTTHHHHHHHTGGGGCCTTCCE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccccc-c--c-ccc-ccHHHHHHHHHHHHHHhCCCCcCE---EEEeCCchhHHHHHHHHHHHHh
Confidence 5899999998765321 1111 1 1 111 111234433334555666444432 2445788899999987663
Q ss_pred ----------------------CCC---CEEEEcCCCCCccccccccccccccccccc--------e---EEEEEcccC-
Q 010008 181 ----------------------KPH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--------Y---FESMPYRLD- 223 (520)
Q Consensus 181 ----------------------~pG---D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~--------~---~~~v~~~~d- 223 (520)
+|| |+|+.+++.|.|+.... +.+.|. . +..++++..
T Consensus 152 ~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 224 (472)
T 1ohv_A 152 RSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGC-------LATTHSKAIHKIDIPSFDWPIAPFPRLK 224 (472)
T ss_dssp HHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHH-------HHHCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred hhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHH-------HhcCCCccccccCCCCCCCcccCCCccc
Confidence 157 89999998764432111 111111 0 011122210
Q ss_pred -C--CC-------CCCCHHHHHHHhhhc-----CCcEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhcc
Q 010008 224 -E--ST-------GLVDYDMLEKTAILF-----RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISG 282 (520)
Q Consensus 224 -~--~~-------~~iD~d~le~~i~~~-----~pklIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~g 282 (520)
+ .. ...|+++|+++++++ ++++|++... ++.+ ..+ +++|+++|+++|++||+|++|. |
T Consensus 225 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g 303 (472)
T 1ohv_A 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G 303 (472)
T ss_dssp SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-C
Confidence 0 00 023688999988763 6788888743 3333 556 9999999999999999999975 4
Q ss_pred ccccccc-C-CCCC---cccEEEeccCcc-cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHH
Q 010008 283 LVAASVV-A-DPFK---YCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 356 (520)
Q Consensus 283 li~~~~~-~-~p~~---~aDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~ 356 (520)
+...+.. . ..+. ..|++++ +|+ ++ ||+++ ++ ++. .+......+..+++.. .+++..++|+
T Consensus 304 ~g~~g~~~~~~~~gv~~~~Di~t~--sK~~l~---GG~~~-~~------~~~-~~~~~~~~~T~~~~~~-~~aaa~aal~ 369 (472)
T 1ohv_A 304 GGSTGKFWAHEHWGLDDPADVMTF--SKKMMT---GGFFH-KE------EFR-PNAPYRIFNTWLGDPS-KNLLLAEVIN 369 (472)
T ss_dssp TTTTSSSSGGGGGCCSSCCSEEEE--CGGGSS---EEEEE-CG------GGS-CSSSSSSCCSSSSCHH-HHHHHHHHHH
T ss_pred CCCCCCchhccccCCCCCCCEEEE--cccccc---CCccC-ch------hhc-ccccccccCccCccHH-HHHHHHHHHH
Confidence 3322210 0 0011 1677654 599 44 47776 44 442 1222212222333333 4444445677
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHC--C----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCC
Q 010008 357 HAQSPEFKVYQNKVVSNCRALASRLVEL--G----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 430 (520)
Q Consensus 357 ~~~~~~~~~~~~~i~~na~~l~~~L~~~--G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg 430 (520)
.+.++ .+.+++.+++++|.+.|.+. + +..+.+ ...++.+++.. ..+...+.+.|.+.||.+. |+
T Consensus 370 ~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~--~g~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~----~~ 439 (472)
T 1ohv_A 370 IIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD-ESIRNKLISIARNKGVMLG----GC 439 (472)
T ss_dssp HHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS-HHHHHHHHHHHHHTTEECE----EE
T ss_pred HHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC--CceEEEEEeCC-hhHHHHHHHHHHHCCeEEe----cC
Confidence 65432 34567777788888888653 2 222222 23455566542 1123456677777899984 32
Q ss_pred CCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 431 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 431 ~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
..+.||++.+..+ +++|++++++.|.+++.
T Consensus 440 -----g~~~iRi~~~~~~----t~e~i~~~~~~l~~~l~ 469 (472)
T 1ohv_A 440 -----GDKSIRFRPTLVF----RDHHAHLFLNIFSDILA 469 (472)
T ss_dssp -----TTTEEEECCCTTC----CHHHHHHHHHHHHHHHH
T ss_pred -----CCCEEEEECCCCC----CHHHHHHHHHHHHHHHH
Confidence 2468999876544 58999999999998875
No 232
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.49 E-value=1.2e-11 Score=130.42 Aligned_cols=308 Identities=18% Similarity=0.149 Sum_probs=171.4
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--CC
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 182 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~p 182 (520)
-.|.|.+|+...+......+.+ +....++ .+++++++.-- +. ....+||++||..++.... .-
T Consensus 104 ~hp~v~~Av~~q~~~~~~~~~~-------~~~~~~l----ae~l~~~~p~~-~~---v~f~~SGsEA~e~AiklAr~~tg 168 (454)
T 4ao9_A 104 SAPEIRDAVIEAMQGGINLTGH-------NLLEGRL----ARLICERFPQI-EQ---LRFTNSGTEANLMALTAALHFTG 168 (454)
T ss_dssp CCHHHHHHHHHHHHTCSCCCSE-------ESSHHHH----HHHHHHHSTTC-SE---EEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCccCC-------cHHHHHH----HHHHHHhCCCC-CE---EEEeCchHHHHHHHHHHHHhccc
Confidence 4799999998877644322211 2222233 35677777422 21 2345799999998886542 23
Q ss_pred CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCC--cEEEEcC--CCCCCCCC
Q 010008 183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP--KLIIAGA--SAYPRDFD 258 (520)
Q Consensus 183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~p--klIi~~~--s~~p~~~d 258 (520)
.++|+..+-.|.|+.. +..... .-....+....++ .-|.+.+++.++++.+ .+||+.. .+.+...+
T Consensus 169 r~~ii~~~~~yHG~t~-~~~~~~---~~~~~~~~~~~~p------~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p 238 (454)
T 4ao9_A 169 RRKIVVFSGGYHGGVL-GFGARP---SPTTVPFDFLVLP------YNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPG 238 (454)
T ss_dssp CCEEEEETTCBCSTTC-BBSSSB---CTTSCCSEEEEEC------TTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEEC
T ss_pred CCeEEEEeCCcCCccc-cccccc---cCccCCCCcccCC------CchHHHHHHHHhhcCCceEEEEeccccCCCCccCC
Confidence 4678887765433311 110000 0011112222322 2378899998876433 4566652 22222333
Q ss_pred ----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCC-CCceEEEeeCCCcchhhHHHhhc
Q 010008 259 ----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELESAIN 332 (520)
Q Consensus 259 ----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~~~~~~~l~~~i~ 332 (520)
+++|+++|+++|++||+|+.|. |-........-+. ..|+++.+ |.+.| ...|.+.+++ ++.+.+.
T Consensus 239 ~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~------ei~~~~~ 309 (454)
T 4ao9_A 239 QPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRA------DVMALFD 309 (454)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECH------HHHGGGC
T ss_pred chhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHH------HHHHHHh
Confidence 8999999999999999999985 5332111000001 25888766 98854 4558888887 6776665
Q ss_pred ccC----CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCC--EEecCCCCCeeEEEEe
Q 010008 333 NAV----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGY--KLVSGGSDNHLVLVDL 402 (520)
Q Consensus 333 ~~~----~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~--~v~~~gt~~~~~~vd~ 402 (520)
... ..++.++......|++ ++|+.+.++ +..+++.++.++|.+.|++ .++ .+-.-| .++-+.+
T Consensus 310 ~~~~~~~h~~T~~gnPla~AAal-a~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G---~m~gi~f 382 (454)
T 4ao9_A 310 PRTGPLAHSGTFNNNVMTMAAGY-AGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFTGIG---SLMNAHF 382 (454)
T ss_dssp TTTCSCCCCCTTTTCHHHHHHHH-HHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEET---TEEEEES
T ss_pred hccCCccccCCCCCCHHHHHHHH-HHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeec---eEEEEEE
Confidence 322 1223334333333333 367777654 4456677777788887765 232 221111 1222333
Q ss_pred cCC---------CCCH---HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008 403 RPM---------GIDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 403 ~~~---------g~~~---~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~ 470 (520)
... ..+. ..+...|.+.||.+. | .+.+.++++ +|++|++++.++|++++..
T Consensus 383 ~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~----p-------~~~~~~s~~------~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 383 VQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSS----P-------RGFVVLSLP------LTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp CCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECC----T-------TCEEECCTT------CCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEc----C-------CCCEEEeCC------CCHHHHHHHHHHHHHHHHh
Confidence 211 1122 234455678899873 2 123455443 5689999999999999875
No 233
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.17 E-value=7.8e-15 Score=155.44 Aligned_cols=317 Identities=14% Similarity=0.077 Sum_probs=179.2
Q ss_pred ccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CCCCCCCceeeecCC
Q 010008 94 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLS 167 (520)
Q Consensus 94 ~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~~~~~~~~~V~~~s 167 (520)
..|++..+.. ..+|.|.+|+...+.+....+|+. +...+++ +++++++ +.+. .+..+|
T Consensus 101 ~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~-------~~~~~La----e~L~~~~p~~~~-----v~~~nS 164 (465)
T 2yky_A 101 AYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQT-------ENEALFA----EAVCDRFPSIDL-----VRFTNS 164 (465)
Confidence 4567665543 237899999987775532222221 2222333 6777888 4332 234578
Q ss_pred hHHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh--cCC
Q 010008 168 GSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRP 243 (520)
Q Consensus 168 Gs~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~--~~p 243 (520)
|++|+..++... ...+|+|+..+..|.|+.. +..+ .....|.....+.++ ..|+++|+++++. .++
T Consensus 165 GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~-~~~s---g~~~~g~~~~~~~~~------~~d~~~l~~~l~~~~~~~ 234 (465)
T 2yky_A 165 GTEANLMALATATAITGRKTVLAFDGGYHGGLL-NFAS---GHAPTNAPYHVVLGV------YNDVEGTADLLKRHGHDC 234 (465)
Confidence 999999988764 2345999999877644321 1000 000011100122222 1378899988873 378
Q ss_pred cEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCcccC-CCCc
Q 010008 244 KLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLR-GPRG 312 (520)
Q Consensus 244 klIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l~-Gprg 312 (520)
++|++... ++++ ..+ +++|+++|+++|++||+|++|. + . .+. ...++ ..|++ |++|++. |++.
T Consensus 235 aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r-~g~-~~a~~~~gv~pDi~--t~sK~lg~G~pi 308 (465)
T 2yky_A 235 AAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-R-LSG-GGAQEMLGISADLT--TLGKYIGGGMSF 308 (465)
Confidence 88888742 3333 344 8999999999999999999987 4 2 111 10111 25665 5679984 5678
Q ss_pred eEEEeeCCCcchhhHHHhhcc---c-C-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--C
Q 010008 313 GMIFFKKDPVLGVELESAINN---A-V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--G 385 (520)
Q Consensus 313 G~I~~~~~~~~~~~l~~~i~~---~-~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G 385 (520)
|++++++ ++.+.+.. . . ..+..+++.....+++ ++|+.+.++ .+.+++.++.+++.+.|.+. .
T Consensus 309 G~v~~~~------~i~~~l~~~~~g~~~~~~T~~~npla~aAa~-aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~ 378 (465)
T 2yky_A 309 GAFGGRR------DLMERFDPARDGAFAHAGTFNNNILTMSAGH-AALTQIYTR---QAASDLSASGDRFRANLNRIAVE 378 (465)
Confidence 9999988 56665544 1 1 1122233223233333 356655442 35566777777788877653 2
Q ss_pred CEEe--cCCCCCeeEEEEecCCCC---------C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008 386 YKLV--SGGSDNHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG 451 (520)
Q Consensus 386 ~~v~--~~gt~~~~~~vd~~~~g~---------~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g 451 (520)
+.++ ..+ ...++++.+....+ + ...+.+.|.+.||.+. |+.. . . ++ + .
T Consensus 379 ~~~~~~v~g-~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~----p~~~-----~-~-~s---~---~ 440 (465)
T 2yky_A 379 NQAPLQFTG-LGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLA----PRGM-----Y-A-LS---L---E 440 (465)
Confidence 2221 111 23344554432010 1 2346666778999984 3210 0 1 22 1 2
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 010008 452 FSEKEFVAIADFIHEGVEI 470 (520)
Q Consensus 452 ~~~~d~~~la~~i~~~l~~ 470 (520)
.+++|++++.+.++++++.
T Consensus 441 ~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 441 IADAGRDAFAEALADFIGE 459 (465)
Confidence 5689999999999888764
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.20 E-value=4.7e-08 Score=103.08 Aligned_cols=331 Identities=16% Similarity=0.153 Sum_probs=170.5
Q ss_pred CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008 104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 181 (520)
Q Consensus 104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~ 181 (520)
.-.|.|.+|+...+.. +.+.. .++..++ ..++ ..+++.+++..+..+ -.+..+|||+||..++... ..
T Consensus 80 h~~p~v~~Ai~~q~~~-~~~~~---~~~~~~~--~~~~--lae~L~~~~p~~~~~--~v~f~~sGsEA~e~AlklAr~~t 149 (456)
T 4atq_A 80 ASDPAVVAAVQEAAAH-FTHTC---FMVTPYE--GYVA--VTEQLNRLTPGDHAK--RTVLFNSGAEAVENAVKVARLAT 149 (456)
T ss_dssp TTCHHHHHHHHHHHHH-CSCCT---TTTSCCH--HHHH--HHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhh-ccCcc---cCccCcH--HHHH--HHHHHHHhCCCCCCc--EEEEeCChHHHHHHHHHHHhhhh
Confidence 3478888888776643 22211 1111122 1222 235677777543211 1234579999999888642 22
Q ss_pred CCCEEEEcCCCCCcccccccc--cccc---ccccc--cceEEEEEcc--cCCCC-CCCCHHHHHHHh-------hhcCCc
Q 010008 182 PHDRIMGLDLPHGGHLSHGFM--TPKR---RVSGT--SIYFESMPYR--LDEST-GLVDYDMLEKTA-------ILFRPK 244 (520)
Q Consensus 182 pGD~Vl~~~~~~~ghls~g~~--~~~~---~v~~~--g~~~~~v~~~--~d~~~-~~iD~d~le~~i-------~~~~pk 244 (520)
...+|+...-.|.|.- .+.. +... ...+. ...+..++++ ..... ...+.+.+++.+ ...+..
T Consensus 150 ~r~~ii~~~~~yHG~t-~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iA 228 (456)
T 4atq_A 150 GRDAVVAFDHAYHGRT-NLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVA 228 (456)
T ss_dssp CCCEEEEETTCCCCSS-HHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEE
T ss_pred cCCeEEEEecccCCcc-ccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceE
Confidence 3468888876554331 0100 0000 00000 0111222322 21111 122333333332 222456
Q ss_pred EEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccCC-CCceE
Q 010008 245 LIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG-PRGGM 314 (520)
Q Consensus 245 lIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~G-prgG~ 314 (520)
+||+..- ...+ .--+++++++|++||++||+|+.+. |+--.|.. ...+. ..|+++++ |.+.| ...|.
T Consensus 229 AvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~t-G~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~a 305 (456)
T 4atq_A 229 AIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQS-GFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSA 305 (456)
T ss_dssp EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEE
T ss_pred EEEeccccCCCCccccchhhhHHHHHHHhhcCCceEeccccc-ccCCccccccccccCCCCchhhhh--hcccCcCCcee
Confidence 6777521 1222 2338999999999999999999864 43211110 00011 36999887 88743 44577
Q ss_pred EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-------CCE
Q 010008 315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-------GYK 387 (520)
Q Consensus 315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-------G~~ 387 (520)
+++++ ++.+.+......++.++......+|++ .|+.+.++++ .+++.+..+++.+.|++. +.+
T Consensus 306 v~~~~------~i~~~~~~~~~~~Tf~gnpla~aaala-~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~ 375 (456)
T 4atq_A 306 ITGRA------DLLDAVHPGGLGGTYGGNPVACAAALA-AIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGS 375 (456)
T ss_dssp EEEEH------HHHTTSCTTSSCCSSSSCHHHHHHHHH-HHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred eEecH------HHHhcccccCCCCCCCCChHHHHhhHH-HHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 88887 666666544444445554444444444 5776654443 344444455565555441 112
Q ss_pred EecC--CCCCeeEEEEecCCC---CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008 388 LVSG--GSDNHLVLVDLRPMG---ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA 459 (520)
Q Consensus 388 v~~~--gt~~~~~~vd~~~~g---~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~ 459 (520)
++.. |. ..+.-+++.... -+ ...+.+.|.+.|+.+... | + ....||+..| ++ ++++|+++
T Consensus 376 ~v~~VRG~-Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~---g---~-~~~~irl~Pp-L~---it~~~id~ 443 (456)
T 4atq_A 376 VVGDIRGR-GAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC---G---T-YGNVIRLLPP-LV---ISDELLID 443 (456)
T ss_dssp CEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE---C---T-TSCEEEECCC-TT---CCHHHHHH
T ss_pred ceEEeeec-ceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec---C---C-CCCEEEEECC-CC---CCHHHHHH
Confidence 2221 11 123334553211 12 234667788899987432 1 1 2357999754 44 57999999
Q ss_pred HHHHHHHHHHH
Q 010008 460 IADFIHEGVEI 470 (520)
Q Consensus 460 la~~i~~~l~~ 470 (520)
+.+.|.++++.
T Consensus 444 ~l~~l~~al~a 454 (456)
T 4atq_A 444 GLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998873
No 235
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.04 E-value=8.5e-09 Score=116.46 Aligned_cols=211 Identities=11% Similarity=0.003 Sum_probs=117.0
Q ss_pred HHHHHHhhh-------cCCcEEEEcCC--CCCCCC--C---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---
Q 010008 232 DMLEKTAIL-------FRPKLIIAGAS--AYPRDF--D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--- 294 (520)
Q Consensus 232 d~le~~i~~-------~~pklIi~~~s--~~p~~~--d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--- 294 (520)
+.|++.+.+ .++.+||+... +.++.. + +++|+++|++||++||+|++|. |+-..|..- .++
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~t-GfGRtG~~f-a~e~~g 654 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFT-GFWRLGVET-TTELLG 654 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTT-TTTTTSBSS-THHHHS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcc-ccccCCCch-hhHhcC
Confidence 567777652 23567777642 333322 2 8999999999999999999854 432222110 011
Q ss_pred -cccEEEeccCcccCC--CCceEEEeeCCCcchhhHHHhhccc------CCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008 295 -YCDVVTTTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 365 (520)
Q Consensus 295 -~aDiv~~S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~------~~p~~~g~p~~~~iaala~al~~~~~~~~~~ 365 (520)
..|+++ +.|.|+| .+.|++++++ ++.+.+... ...++.+++.....+++ ++|+.+.++++.+
T Consensus 655 v~PDiit--lsK~L~gG~~Plgav~~~~------~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaal-a~L~~i~~~~l~~ 725 (831)
T 4a0g_A 655 CKPDIAC--FAKLLTGGMVPLAVTLATD------AVFDSFSGDSKLKALLHGHSYSAHAMGCATAA-KAIQWFKDPETNH 725 (831)
T ss_dssp SCCSEEE--ECGGGGTTSSCCEEEEECH------HHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHH-HHHHHHHCTTTCT
T ss_pred CCCcEEE--EecccccCccCcEEEEECH------HHHHHHhcccccccceeecCCcccHHHHHHHH-HHHHHHHhhHHHH
Confidence 258875 5599966 3669999988 676665432 12233444444333443 3677665443311
Q ss_pred HHHHHHH-H----HHHHHHHHHHC-CCEEecCCCCCeeEEEEecCC-------CCCHHHHHHHHhhcCeEEcCCCCCCCC
Q 010008 366 YQNKVVS-N----CRALASRLVEL-GYKLVSGGSDNHLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGDK 432 (520)
Q Consensus 366 ~~~~i~~-n----a~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~-------g~~~~~~~~~L~~~gI~v~~~~~Pg~~ 432 (520)
..++..+ . .+.+.+.+.+. .+..+.+ ...+..+++... ......+.+.|.+.||.+. |+
T Consensus 726 ~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~----p~-- 797 (831)
T 4a0g_A 726 NITSQGKTLRELWDEELVQQISSHSAVQRVVV--IGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR----PL-- 797 (831)
T ss_dssp TBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE--ETTEEEEEEC---------CHHHHHHHHHHHHTTEECC----CB--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceeEee--cccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEE----ec--
Confidence 1111000 0 11233445443 2322221 123444554321 0113457778889999984 32
Q ss_pred CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 433 ~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
...||+..+..+ +++|++++.+.|.++++
T Consensus 798 ----g~~lrl~pp~~~----t~e~id~~~~~l~~~l~ 826 (831)
T 4a0g_A 798 ----GNVIYLMCGPCT----SPEICRRLLTKLYKRLG 826 (831)
T ss_dssp ----TTEEEEECCTTC----CHHHHHHHHHHHHHHHT
T ss_pred ----CCEEEEECCCCC----CHHHHHHHHHHHHHHHH
Confidence 358999877554 58999999999988775
No 236
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=98.95 E-value=8.2e-07 Score=94.00 Aligned_cols=325 Identities=13% Similarity=0.091 Sum_probs=168.8
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008 105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 180 (520)
Q Consensus 105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---- 180 (520)
-.|.|.+|+...+..-. . + ..+++. .....+| + .+++.+++..+.+. .....|||+||..++....
T Consensus 84 ~~p~v~~Ai~~q~~~l~-~-~--~~~~~~-~~~~~~~-l-Ae~L~~~~p~~~~~---v~f~~sGsEA~e~AiKlAr~~~~ 153 (473)
T 4e3q_A 84 DHKGLIDAAKAQYERFP-G-Y--HAFFGR-MSDQTVM-L-SEKLVEVSPFDSGR---VFYTNSGSEANDTMVKMLWFLHA 153 (473)
T ss_dssp CCHHHHHHHHHHHHHCC-C-C--CCCTTE-EEHHHHH-H-HHHHHHHSSCSSCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-c-c--cccccc-cCHHHHH-H-HHHHHhhCCCCccE---EEEeCchHHHHHHHHHHHHHHHH
Confidence 47899999887765421 0 0 012221 1112222 3 36778887655432 2345799999998876421
Q ss_pred ---CCC-CEEEEcCCCCCcccccccc--c---cccc--cccccceEEEEEccc--C-CCCCCC-------CHHHHHHHhh
Q 010008 181 ---KPH-DRIMGLDLPHGGHLSHGFM--T---PKRR--VSGTSIYFESMPYRL--D-ESTGLV-------DYDMLEKTAI 239 (520)
Q Consensus 181 ---~pG-D~Vl~~~~~~~ghls~g~~--~---~~~~--v~~~g~~~~~v~~~~--d-~~~~~i-------D~d~le~~i~ 239 (520)
+++ .+|+...-.|.|.- .+.. + ..+. .-..+ +..+++|. . .+.+.. ..+++++.+.
T Consensus 154 ~~g~~~r~~ii~~~~~yHG~t-~~a~s~tg~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 230 (473)
T 4e3q_A 154 AEGKPQKRKILTRWNAYHGVT-AVSASMTGKPYNSVFGLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQ 230 (473)
T ss_dssp HTTCTTCCEEEEETTCCCCSS-HHHHHHSCCGGGGGGTCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcceEEEeeceECCCc-cccccccccccccccCCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHH
Confidence 344 46777765543321 0100 0 0000 00111 12222221 0 011111 1245555555
Q ss_pred hcC---CcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCccc
Q 010008 240 LFR---PKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL 307 (520)
Q Consensus 240 ~~~---pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l 307 (520)
... .-+||+..- ...+ .--+++++++|+++|++||+|+.+. |+--.|.. . .-+. ..|+++.+ |.+
T Consensus 231 ~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~t-GfGRtG~~fa~e~~gv~PDi~t~~--K~l 307 (473)
T 4e3q_A 231 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC-GFGRTGNTWGCVTYDFTPDAIISS--KNL 307 (473)
T ss_dssp HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTT-SSSTTSSSCHHHHTTCCCSEEEEC--GGG
T ss_pred hhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccc-cCCcccchhHHHhcCCCCChHHhc--ccc
Confidence 433 345666521 1222 2238999999999999999999853 43211110 0 0001 36899876 998
Q ss_pred CC--CCceEEEeeCCCcchhhHHHhhccc-------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008 308 RG--PRGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 378 (520)
Q Consensus 308 ~G--prgG~I~~~~~~~~~~~l~~~i~~~-------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~ 378 (520)
.| ...|.+++++ ++.+.+... ...++.++......+|++ .|+.+.++++ .+++.+..++|.
T Consensus 308 ~gG~~Pl~av~~~~------~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala-~L~~i~~~~l---~~~~~~~g~~l~ 377 (473)
T 4e3q_A 308 TAGFFPMGAVILGP------ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK-AIDVVMNEGL---AENVRRLAPRFE 377 (473)
T ss_dssp GTTSSCCEEEEECH------HHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHH-HHHHHHHSSH---HHHHHHHHHHHH
T ss_pred cCCCCCcccccccH------HHHHHhccccccccccccCCCCCCCcchhhhhhh-hhhhhccccH---HHHHHHHHHHHH
Confidence 54 4568888887 565554321 112233443333333443 5666654443 455556677777
Q ss_pred HHHHHC----CCEEecCCCCCeeEEEEecCCC-----CC-----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008 379 SRLVEL----GYKLVSGGSDNHLVLVDLRPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444 (520)
Q Consensus 379 ~~L~~~----G~~v~~~gt~~~~~~vd~~~~g-----~~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~ 444 (520)
+.|++. .+.-+.+ . ..+.-+++.... .+ ...+.+.+.+.|+.+... ...||+..
T Consensus 378 ~~L~~l~~~~~v~~vRG-~-Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------g~~i~l~P 445 (473)
T 4e3q_A 378 ERLKHIAERPNIGEYRG-I-GFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------GQSVVLCP 445 (473)
T ss_dssp HHHHHHTTSTTEEEEEE-E-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----------TTEEEECC
T ss_pred HHHHHHhcCCCeeEEee-c-ceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----------CCEEEEeC
Confidence 777652 2211111 1 123334432110 11 345777888999988421 24789964
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008 445 PAMTTRGFSEKEFVAIADFIHEGVEIT 471 (520)
Q Consensus 445 ~~~tt~g~~~~d~~~la~~i~~~l~~~ 471 (520)
| ++ ++++|++++.+.+.++++..
T Consensus 446 P-L~---it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 446 P-FI---LTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp C-TT---CCHHHHHHHHHHHHHHHHHH
T ss_pred C-CC---CCHHHHHHHHHHHHHHHHHH
Confidence 4 44 57999999999999988643
No 237
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=46.70 E-value=16 Score=31.85 Aligned_cols=52 Identities=13% Similarity=-0.020 Sum_probs=37.8
Q ss_pred eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhC
Q 010008 214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVG 270 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g 270 (520)
+|+++..+. ...++++.+.+.+++|.+|.++....+....++++.+.+++.|
T Consensus 46 G~eVi~lG~-----~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 46 GFEVVYTGL-----RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp TCEEECCCS-----BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCC-----CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcC
Confidence 357666443 3678999888888899999998666555556777777777754
No 238
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=42.39 E-value=24 Score=35.08 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=40.8
Q ss_pred CCCC-CHHHHHHHhhh----cCCcEEEE-----cCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcc
Q 010008 226 TGLV-DYDMLEKTAIL----FRPKLIIA-----GASAYPR-DFDYPRMRQIADAVGALLMMDMAHISG 282 (520)
Q Consensus 226 ~~~i-D~d~le~~i~~----~~pklIi~-----~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~g 282 (520)
+|.- ++++++.++.. .++++++| ++++|+. ..|+..|..+.+..++.++.|..|..|
T Consensus 220 ~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~~lpVi~dssHs~G 287 (350)
T 1vr6_A 220 RGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGG 287 (350)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhhCCCEEEeCCCCCc
Confidence 5553 78887666542 25688887 2344433 678988888877779999999999876
No 239
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=42.16 E-value=32 Score=31.07 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=43.1
Q ss_pred eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhC----CEEEEech
Q 010008 214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVG----ALLMMDMA 278 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g----~~li~D~A 278 (520)
+|+++.++. ....+++.+.+.+++|++|.++....++...++++.+.+++.| +.+++=++
T Consensus 116 G~~v~~LG~-----~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 116 GFTVYNLGV-----DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp TCEEEECCS-----SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEEST
T ss_pred CCEEEECCC-----CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECC
Confidence 457766553 3678999888888899999998765555556778887777765 66666443
No 240
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=42.05 E-value=24 Score=35.48 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=41.7
Q ss_pred CCC-CCHHHHHHHhhh----cCCcEEEEc--CCCCCC----CCCHHHHHHHHHHhCCEEEEechhhcc
Q 010008 226 TGL-VDYDMLEKTAIL----FRPKLIIAG--ASAYPR----DFDYPRMRQIADAVGALLMMDMAHISG 282 (520)
Q Consensus 226 ~~~-iD~d~le~~i~~----~~pklIi~~--~s~~p~----~~d~~~i~~ia~~~g~~li~D~Ah~~g 282 (520)
+|. -++++++.++.. .+++++++- .+.||+ ..|+..|..+.+..++.+++|.+|..|
T Consensus 256 ~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th~~G 323 (385)
T 3nvt_A 256 RGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTG 323 (385)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEcCCCCCC
Confidence 455 788888766543 246777763 556654 568998888888889999999998765
No 241
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=41.62 E-value=32 Score=32.88 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=40.6
Q ss_pred CCC-CCHHHHHHHhhh----cCCcEEEEc--CCCC---CC-CCCHHHHHHHHHHhCCEEEEechhhcc
Q 010008 226 TGL-VDYDMLEKTAIL----FRPKLIIAG--ASAY---PR-DFDYPRMRQIADAVGALLMMDMAHISG 282 (520)
Q Consensus 226 ~~~-iD~d~le~~i~~----~~pklIi~~--~s~~---p~-~~d~~~i~~ia~~~g~~li~D~Ah~~g 282 (520)
+|. .++++++.++.. .+++++++- .++| +. ..|+..+..+.+..|+.++.|..|..|
T Consensus 152 ~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~g 219 (276)
T 1vs1_A 152 RGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPAG 219 (276)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 555 488888766542 246777653 3333 43 678998888877779999999999876
No 242
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=39.24 E-value=63 Score=26.69 Aligned_cols=50 Identities=6% Similarity=-0.134 Sum_probs=38.9
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEech
Q 010008 228 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMA 278 (520)
Q Consensus 228 ~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~A 278 (520)
.++.++++..+.+ +|.++++|.-.+.....-+++.+..++.|+-+-+-.+
T Consensus 48 ~l~~~~l~~ll~~-~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T 97 (122)
T 2ab1_A 48 GVQPADVKEVVEK-GVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQT 97 (122)
T ss_dssp CCCHHHHHHHHTT-CCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECH
T ss_pred HCCHHHHHHHhhC-CCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCH
Confidence 5888999999887 8999999976665542447788888999988776543
No 243
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=36.21 E-value=48 Score=31.44 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=42.9
Q ss_pred eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC---CCCCHHHHHHHHHHhC----CEEEEec
Q 010008 214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP---RDFDYPRMRQIADAVG----ALLMMDM 277 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p---~~~d~~~i~~ia~~~g----~~li~D~ 277 (520)
+|+++.++. .+.++++.+++.++++.+|.++....+ ....++++.+.+++.| +.+++=+
T Consensus 157 G~eVi~LG~-----~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG 222 (262)
T 1xrs_B 157 MIDAYNLGS-----QVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGG 222 (262)
T ss_dssp TEEEEECCS-----SBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEEC
T ss_pred CcEEEECCC-----CCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 578877664 367899988888889999999877666 4455677777777765 5555543
No 244
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=34.45 E-value=24 Score=29.69 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=36.4
Q ss_pred eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhC
Q 010008 214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVG 270 (520)
Q Consensus 214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g 270 (520)
+|+++..+. ...++++.+++.+.++++|.++....+....++++.+..++.|
T Consensus 31 G~~Vi~lG~-----~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 31 GFNVVNIGV-----LSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp TCEEEEEEE-----EECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred CCEEEECCC-----CCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 457776554 3678888888887799999998766554445666666666643
No 245
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=31.82 E-value=54 Score=31.01 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=41.9
Q ss_pred CCC-CCHHHHHHHhhh----cCCcEEEEc-----CCCCCC-CCCHHHHHHHHHHhCCEEEEechhhccc
Q 010008 226 TGL-VDYDMLEKTAIL----FRPKLIIAG-----ASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGL 283 (520)
Q Consensus 226 ~~~-iD~d~le~~i~~----~~pklIi~~-----~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gl 283 (520)
++. .+++++..++.. .+++++++- .++|+. ..|+..+..+.+..+..+|.|..|..|.
T Consensus 137 ~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~ 205 (262)
T 1zco_A 137 RGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGR 205 (262)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCS
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCc
Confidence 454 388888776642 246666653 356766 6788898888777799999999998664
No 246
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=30.29 E-value=82 Score=31.58 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=55.4
Q ss_pred CCCCCHHHHHHHhhhc----CCcEEEE-cCCCCCC---CCCHHHHHHHHHHh-CCEEEEechhhcc-cccccccCCCCCc
Q 010008 226 TGLVDYDMLEKTAILF----RPKLIIA-GASAYPR---DFDYPRMRQIADAV-GALLMMDMAHISG-LVAASVVADPFKY 295 (520)
Q Consensus 226 ~~~iD~d~le~~i~~~----~pklIi~-~~s~~p~---~~d~~~i~~ia~~~-g~~li~D~Ah~~g-li~~~~~~~p~~~ 295 (520)
+|.-++++++.++.-. ..+++++ |.+.||+ ..|+..|..+.+.+ ++.+ .|-.|..| ....- . ...-|
T Consensus 165 tGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpV-G~SdHt~G~~~~~~-A-AvAlG 241 (385)
T 1vli_A 165 TAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVI-GFSDHSEHPTEAPC-A-AVRLG 241 (385)
T ss_dssp CTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEE-EEEECCSSSSHHHH-H-HHHTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCE-EeCCCCCCchHHHH-H-HHHcC
Confidence 4555788887665422 3477776 4777876 67899999998888 8887 67788877 22100 0 00016
Q ss_pred ccEE--EeccCcccCCCCceE
Q 010008 296 CDVV--TTTTHKSLRGPRGGM 314 (520)
Q Consensus 296 aDiv--~~S~hK~l~GprgG~ 314 (520)
||++ -++..|++.||-+..
T Consensus 242 A~iIEkHftldra~~G~D~~~ 262 (385)
T 1vli_A 242 AKLIEKHFTIDKNLPGADHSF 262 (385)
T ss_dssp CSEEEEEBCSCTTSSCSSCTT
T ss_pred CCEEEeCCCccccCCCCchhh
Confidence 7753 378888887775533
No 247
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=29.02 E-value=46 Score=30.39 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=43.9
Q ss_pred cceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE--cCCCCCCCCCHHHHHHHHHHhC----CEEEEec
Q 010008 212 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA--GASAYPRDFDYPRMRQIADAVG----ALLMMDM 277 (520)
Q Consensus 212 g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~--~~s~~p~~~d~~~i~~ia~~~g----~~li~D~ 277 (520)
..+|+++.++.+ +.++++.+.+.+++|++|.+ +....++...++++.+..++.| +.+++=+
T Consensus 118 ~~G~~Vi~LG~~-----vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 118 ANGFQIVDLGVD-----VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HTSCEEEECCSS-----CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred HCCCeEEEcCCC-----CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 344688776643 67899988888889999999 6555555667888888888875 4555543
No 248
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=28.95 E-value=1.5e+02 Score=26.99 Aligned_cols=47 Identities=28% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 410 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 410 ~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
..+++.+...++-+|+. . .+..|||.+|.+| ++--++++..+++..+
T Consensus 100 ~~IekAI~~S~LglnP~----~----dG~~Iri~iP~LT-----eErRkelvK~ak~~~E 146 (209)
T 4gfq_A 100 GDIEKAILKADLGLNPS----N----DGTVIRIAFPALT-----EERRRDLVKVVKKYAE 146 (209)
T ss_dssp HHHHHHHHHHTSSCCCE----E----CSSCEEEECCBCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC----c----CCCceeeeCCCcc-----HHHHHHHHHHHHHHHH
Confidence 56888888777655432 1 2346999999877 5666777776665543
No 249
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=28.46 E-value=43 Score=33.18 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHhhh---cCCcEEEE-cCCCCCC---CCCHHHHHHHHHHh-CCEEEEechhhcccccccccCCCCC-cc
Q 010008 226 TGLVDYDMLEKTAIL---FRPKLIIA-GASAYPR---DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK-YC 296 (520)
Q Consensus 226 ~~~iD~d~le~~i~~---~~pklIi~-~~s~~p~---~~d~~~i~~ia~~~-g~~li~D~Ah~~gli~~~~~~~p~~-~a 296 (520)
+|.-++++++.++.- ...+++++ +.+.||+ ..|+..|-.+.+.+ ++.+ .|-.|..|.... . -.+. ||
T Consensus 155 tGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpV-g~sdHt~G~~~~-~--AAvAlGA 230 (349)
T 2wqp_A 155 TGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAII-GLSDHTLDNYAC-L--GAVALGG 230 (349)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEE-EEECCSSSSHHH-H--HHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCE-EeCCCCCcHHHH-H--HHHHhCC
Confidence 455578887766542 23377776 4677876 67899999998888 8887 578888772210 0 0011 68
Q ss_pred cEE--EeccCcccCCCCceEEEeeC
Q 010008 297 DVV--TTTTHKSLRGPRGGMIFFKK 319 (520)
Q Consensus 297 Div--~~S~hK~l~GprgG~I~~~~ 319 (520)
|++ -++..|.+.|+-+..-+.++
T Consensus 231 ~iIEkH~tld~a~~G~D~~~SL~p~ 255 (349)
T 2wqp_A 231 SILERHFTDRMDRPGPDIVCSMNPD 255 (349)
T ss_dssp CEEEEEBCSCTTCCSTTGGGCBCHH
T ss_pred CEEEeCCCccccCCCCChhhhCCHH
Confidence 853 37888998887665544444
No 250
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=24.90 E-value=98 Score=25.39 Aligned_cols=46 Identities=9% Similarity=0.309 Sum_probs=30.7
Q ss_pred CCHHHHHHHhhh--------cCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEE
Q 010008 229 VDYDMLEKTAIL--------FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLM 274 (520)
Q Consensus 229 iD~d~le~~i~~--------~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li 274 (520)
.|++.+.+.+.+ ++-.-|+++.+......|+.+|.++++++|+.++
T Consensus 25 ~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 25 AEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECCSSCCHHHHHHHHHTTTCEEE
T ss_pred CCHHHHHHHHHHHHHhChHhhCCCcEEEEccccCChHHHHHHHHHHHHcCCEEE
Confidence 466666554432 2334566654443345799999999999999885
No 251
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.11 E-value=81 Score=29.51 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=38.8
Q ss_pred ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhC
Q 010008 213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVG 270 (520)
Q Consensus 213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g 270 (520)
.+|+++.++.+ ..++++.+.+.+.+|.+|.++....++...++++.+..++.|
T Consensus 150 ~G~~Vi~LG~~-----vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~ 202 (258)
T 2i2x_B 150 NGYNVVDLGRD-----VPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENG 202 (258)
T ss_dssp TTCEEEEEEEE-----CCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTT
T ss_pred CCCEEEECCCC-----CCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcC
Confidence 34577776543 467888888887799999998766666667788887777654
No 252
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=24.11 E-value=40 Score=25.97 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCEEEEech
Q 010008 259 YPRMRQIADAVGALLMMDMA 278 (520)
Q Consensus 259 ~~~i~~ia~~~g~~li~D~A 278 (520)
-.+|+++|+++|+.++.|..
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 46899999999999999954
No 253
>3l2f_A Glycocyamine kinase beta chain; phosphagen kinase, transition state ANA kinase, transferase; HET: ADP; 2.30A {Namalycastis SP} PDB: 3l2e_B 3l2d_A* 3l2g_A* 3l2e_A
Probab=23.04 E-value=5.4e+02 Score=25.61 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHH-HHHHHHHHHHHHHH
Q 010008 410 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF-VAIADFIHEGVEIT 471 (520)
Q Consensus 410 ~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~-~~la~~i~~~l~~~ 471 (520)
..+.+.|.+.|+.++..+ |..+....+-+.||- ..+.|.+|.|+ +.+.+.+..+++.-
T Consensus 317 ~~~~~il~klgLqvRG~~--Ge~s~a~G~iydISN--~~~LG~SE~eiV~~l~~~v~~LIe~E 375 (390)
T 3l2f_A 317 PRFDEMLGKLRLGKRGTG--GESSLATDSTYDISN--WARLGKSERELVQVLVDGVNLLIACD 375 (390)
T ss_dssp TTHHHHHHHTTEEEEBTT--BTTSCCBTTEEEEEE--CCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCeEEecCC--CCCCcccCCEEEEec--ccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 457788999999997532 332333456678875 35689999874 55566666666544
No 254
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=22.90 E-value=30 Score=35.27 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=24.6
Q ss_pred CCCCCCCCHHHHHHHHHHhCCEEEEech
Q 010008 251 SAYPRDFDYPRMRQIADAVGALLMMDMA 278 (520)
Q Consensus 251 s~~p~~~d~~~i~~ia~~~g~~li~D~A 278 (520)
+.+++..|+++|++-|+++|+.||.|..
T Consensus 71 ~~~Gt~~df~~lv~~aH~~Gi~VilD~V 98 (496)
T 4gqr_A 71 TRSGNEDEFRNMVTRCNNVGVRIYVDAV 98 (496)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4566778999999999999999999975
No 255
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=21.68 E-value=3.9e+02 Score=23.59 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 409 GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 409 ~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
-..+++.+...++-+|+. . ....||+.+|.+| ++--++++..++...+
T Consensus 75 i~~IekAI~~SdLglnP~----~----dG~~Iri~iP~lT-----eErRkelvK~~k~~~E 122 (185)
T 1is1_A 75 TQKVEKAIMMSDLGLNPM----S----AGTIIRVPLPPLT-----EERRKDLVKIVRGEAE 122 (185)
T ss_dssp HHHHHHHHHHTTSSCCCE----E----ETTEEEEECCCCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcc----c----CCCEEEEeCCCCC-----HHHHHHHHHHHHHHHH
Confidence 466888888777665432 1 2357999999877 5666677766665543
No 256
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=21.51 E-value=1.3e+02 Score=23.79 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=10.7
Q ss_pred hhcCCcEEEEcCCCC
Q 010008 239 ILFRPKLIIAGASAY 253 (520)
Q Consensus 239 ~~~~pklIi~~~s~~ 253 (520)
+.++|++|+++..|.
T Consensus 73 ~~~~P~vV~vd~~N~ 87 (97)
T 1uhe_A 73 NAHKPSIVLVDEKNE 87 (97)
T ss_dssp HHCCCEEEEECTTSC
T ss_pred hcCCCEEEEECCCCC
Confidence 456899988875543
No 257
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=21.39 E-value=1.2e+02 Score=23.89 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=10.5
Q ss_pred hhhcCCcEEEEcCCC
Q 010008 238 AILFRPKLIIAGASA 252 (520)
Q Consensus 238 i~~~~pklIi~~~s~ 252 (520)
++.++|++|+++..|
T Consensus 74 ~~~~~P~vV~vd~~N 88 (96)
T 1vc3_B 74 ARNLKPTVVLVDERN 88 (96)
T ss_dssp HTTCCCEEEEECTTC
T ss_pred HhcCCCEEEEECCCC
Confidence 345689988887554
No 258
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=21.18 E-value=3.9e+02 Score=23.63 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008 410 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469 (520)
Q Consensus 410 ~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~ 469 (520)
..+++.+...++-+|+. . ....||+.+|.+| ++--++++..++...+
T Consensus 76 ~~IekAI~~SdLglnP~----~----dG~~Iri~iP~lT-----eErRkelvK~~k~~~E 122 (185)
T 1dd5_A 76 SLIEKAINASDLGLNPI----N----DGNVIRLVFPSPT-----TEQREKWVKKAKEIVE 122 (185)
T ss_dssp HHHHHHHHHSSSCCCCE----E----CSSCEEEECCCCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcc----c----CCCEEEEeCCCCC-----HHHHHHHHHHHHHHHH
Confidence 56888888777766432 1 2346999999877 5666667766665443
No 259
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=20.80 E-value=1e+02 Score=25.80 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=36.8
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEech
Q 010008 228 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMA 278 (520)
Q Consensus 228 ~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~A 278 (520)
.++.++++..+.. +|.+|++|.-...... -.++++..++.|+-+-+-.+
T Consensus 51 ~l~~e~l~~ll~~-~pevliiGTG~~~~~l-~p~~~~~l~~~GI~vE~m~T 99 (132)
T 2gm2_A 51 QLQPAHMDAVLAL-NPAVILLGTGERQQFP-STDVLAACLTRGIGLEAMTN 99 (132)
T ss_dssp GCCTTTSHHHHHH-CCSEEEEECTTSCCCC-CHHHHHHHHHHTCEEEEECH
T ss_pred cCCHHHHHHHHhc-CCCEEEECCCCCCCcC-CHHHHHHHHHcCCEEEEeCH
Confidence 4677777777776 7999999977666633 46788888899988776543
No 260
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=20.71 E-value=1.6e+02 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=9.9
Q ss_pred hhcCCcEEEEcCCC
Q 010008 239 ILFRPKLIIAGASA 252 (520)
Q Consensus 239 ~~~~pklIi~~~s~ 252 (520)
+.++|++|+++..|
T Consensus 74 ~~~~P~vv~vd~~N 87 (102)
T 3plx_B 74 KTFKPKVVFVDENN 87 (102)
T ss_dssp HHCCCEEEEECTTS
T ss_pred hcCCCEEEEECCCC
Confidence 34689988887544
No 261
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=20.69 E-value=2.1e+02 Score=26.10 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=36.7
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEech
Q 010008 230 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMA 278 (520)
Q Consensus 230 D~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~A 278 (520)
+++++++++.. ....|+++...-.+...++++.+.+++.|..+++|..
T Consensus 90 ~~~~i~~~~~a-Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~ 137 (229)
T 3q58_A 90 YLQDVDALAQA-GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCS 137 (229)
T ss_dssp SHHHHHHHHHH-TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECS
T ss_pred cHHHHHHHHHc-CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecC
Confidence 35677777665 7888888766533446789999999999999999953
No 262
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=20.50 E-value=2.1e+02 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=36.6
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEech
Q 010008 230 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMA 278 (520)
Q Consensus 230 D~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~A 278 (520)
+++++++++.. ....|+++...-.....++++.+.+++.|..+++|..
T Consensus 90 ~~~~i~~~~~~-Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~ 137 (232)
T 3igs_A 90 FLDDVDALAQA-GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS 137 (232)
T ss_dssp SHHHHHHHHHH-TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC
T ss_pred cHHHHHHHHHc-CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCC
Confidence 45677777665 7888888766533346789999999999999999953
Done!