RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010008
(520 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 515 bits (1328), Expect = 0.0
Identities = 274/463 (59%), Positives = 339/463 (73%), Gaps = 11/463 (2%)
Query: 68 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 127
+ L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G PG
Sbjct: 6 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPG 65
Query: 128 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 187
+RYYGG E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIM
Sbjct: 66 QRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIM 125
Query: 188 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247
GLDLP GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLII
Sbjct: 126 GLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 185
Query: 248 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 307
AG S Y R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+L
Sbjct: 186 AGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTL 245
Query: 308 RGPRGGMIFFKKD---------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 358
RG R GMIF+++ + LES IN+AVFPGLQGGPHNH I G+AV LK A
Sbjct: 246 RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA 305
Query: 359 QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM 418
+PEFK YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+
Sbjct: 306 MTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEA 365
Query: 419 ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK-KL 477
SI NKN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ +
Sbjct: 366 CSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 425
Query: 478 VQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
+ L++F + + V LR VE+ FP+PG+
Sbjct: 426 GPRATLKEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 467
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 499 bits (1286), Expect = e-175
Identities = 274/456 (60%), Positives = 343/456 (75%), Gaps = 12/456 (2%)
Query: 73 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 7 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 66
Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
G E +DE+E LCQ+RAL AF+LD +WGVNVQP SGSPAN VYTA+L+PHDRIMGLDLP
Sbjct: 67 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 126
Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
GGHL+HG+M+ +R+S TSI+FESMPY+L+ TGL+DY+ L TA LFRP+LIIAG SA
Sbjct: 127 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 186
Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
Y R DY RMR++ D V A L+ DMAHISGLVAA V+ PFK+ D+VTTTTHK+LRG R
Sbjct: 187 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 246
Query: 313 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 363
G+IF++K DP G E+ E IN AVFP LQGGPHNH I +AV LK A +P F
Sbjct: 247 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 306
Query: 364 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423
+ Y +V+ N RA+A L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT
Sbjct: 307 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 366
Query: 424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F + DFI EGV I LE K +KL
Sbjct: 367 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKL 424
Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
QDF +F+ + +A+LR RVE FP+PG
Sbjct: 425 QDFKSFLLK-DSETSQRLANLRQRVEQFARAFPMPG 459
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 463 bits (1192), Expect = e-161
Identities = 199/448 (44%), Positives = 272/448 (60%), Gaps = 38/448 (8%)
Query: 71 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 130
+ ++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRY
Sbjct: 4 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 63
Query: 131 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 190
YGG EY+D +E L RA F NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 64 YGGCEYVDIVEQLAIDRAKELFGA----DYANVQPHSGSQANFAVYTALLEPGDTVLGMN 119
Query: 191 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 250
L HGGHL+HG V+ + + +PY +D TG +DY LEK A +PK+II G
Sbjct: 120 LAHGGHLTHG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGF 173
Query: 251 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 310
SAY D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GP
Sbjct: 174 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP 233
Query: 311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 370
RGG+I K + +N+AVFPG QGGP H I G AV LK A PEFK YQ +V
Sbjct: 234 RGGLILAKGGSEELYK---KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQV 290
Query: 371 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 430
N +A+ +E GYK+VSGG+DNHL LVDL + G + L A+IT+NKNSVP
Sbjct: 291 AKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPN 350
Query: 431 D-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 489
D KS V GIR+G+PA+T RGF E E +A ++ + ++ + +
Sbjct: 351 DPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVI------------ 398
Query: 490 VTSPNFSLMNNVADLRGRVEALTTQFPI 517
++G+V + ++P+
Sbjct: 399 ------------ERIKGKVLDICARYPV 414
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 452 bits (1165), Expect = e-157
Identities = 203/440 (46%), Positives = 266/440 (60%), Gaps = 40/440 (9%)
Query: 74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
EY+D +E L ++RA F NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGA----EHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
GGHL+HG V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHGSP-----VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
MI ++ I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQEQ------FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTS 492
S V GIRIG+ A+TTRGF +E IA I ++
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK----------------------- 385
Query: 493 PNFSLMNNVADLRGRVEALT 512
N + + R RV ALT
Sbjct: 386 -NVGSEQALEEARQRVAALT 404
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 170 bits (432), Expect = 4e-48
Identities = 61/461 (13%), Positives = 125/461 (27%), Gaps = 82/461 (17%)
Query: 83 EIITKEKERQFKSLELIASEN---FTSRAVM------EAVGSCLTNKYSEGLPGKRYYGG 133
E + + + + + N S V G+ + + + G + G
Sbjct: 13 EPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSG 72
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTAILKPHDRIMGLDL 191
+ L ++ +G + G A ++K ++ GLD
Sbjct: 73 SRSYYALA-----ESVKNI------FGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 192 PHGGHLSHGFMTPKR---RVSGTS-----IYFESMPYRLDESTGLVDYDMLEKTAILFRP 243
S+ F + +++G + I + G D + LE+ P
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 244 KLII---------AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-------- 286
+ + + M IA ++MD A +
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 287 ------SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 340
+ + +KY D++ + K P GG++ K D V + +
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY---TECRTLCVVQE 298
Query: 341 GGPHNHTIGGLAVCLKHAQSPEF--KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV 398
G P + G A+ + + ++ + L L E +V + H
Sbjct: 299 GFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEE--IGVVCQQAGGHAA 356
Query: 399 LVDLRPMGID--------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP----- 445
VD + A ++ +A I + G
Sbjct: 357 FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL 416
Query: 446 AMTTRGFSEKEFVAIADFIHE---------GVEITLEAKKL 477
+ +++ I + G+ T E K L
Sbjct: 417 TIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVL 457
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 148 bits (375), Expect = 5e-40
Identities = 58/421 (13%), Positives = 118/421 (28%), Gaps = 74/421 (17%)
Query: 113 VGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 172
+ ++++ + G Y G+ +L+ +A FN D + G A
Sbjct: 53 TNAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYDYI-----IPAHQGRGAE 103
Query: 173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM------PYRLDEST 226
++ +LK + P H T + D+
Sbjct: 104 NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWK 163
Query: 227 GLVDYDMLEKTA---------ILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDM 277
G D L++ + + + + +IA G ++MD
Sbjct: 164 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 223
Query: 278 AHISGLVA--------------ASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 323
A V+ D +KY D +T + K GG++ + + +
Sbjct: 224 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI 283
Query: 324 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE--FKVYQNKVVSNCRALASRL 381
+ ++G + G + E + Y + + + L RL
Sbjct: 284 FT-----LARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL 338
Query: 382 VELGYKLVSGGSDNHLVLVDLRPMGID--------GARVEKILDMASITLNKNSVP---- 429
E G + H V VD + + A + + + + +
Sbjct: 339 REAGIPIQYPT-GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR 397
Query: 430 ----GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE---------GVEITLEAKK 476
G++ +R+ R ++ IAD + G+E E
Sbjct: 398 DPATGEQKHADMEFMRLTIA---RRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPV 454
Query: 477 L 477
L
Sbjct: 455 L 455
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 142 bits (357), Expect = 1e-37
Identities = 55/417 (13%), Positives = 98/417 (23%), Gaps = 53/417 (12%)
Query: 93 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-------EYIDELETLC- 144
FKSL+ S G K+ G ++G L L
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 145 --------QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 196
+K A +N D+ S AN V +A++ D ++ H
Sbjct: 64 HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119
Query: 197 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK----------LI 246
+ R + D + + A P+ +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179
Query: 247 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISG----------LVAASVVADPFKYC 296
I + ++ + + + + D A + P
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239
Query: 297 DVVTTTTHKSLRGPRGGMIFFKKD----PVLGVELESAINNAVFPGLQGGPHNHTIGGLA 352
+V + HK G KKD L NN+ + P L
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299
Query: 353 VCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-------GYKLVSGGSDNHLVLVDLRPM 405
V + + + ++ +L++ +V+G D+
Sbjct: 300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANN 359
Query: 406 GIDGARVEKILDMASITLNKNSVPGD--KSALVPGGIRIGSPAMTTRGFSEKEFVAI 460
+ A N D K L GI + G
Sbjct: 360 IDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANY 416
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 131 bits (329), Expect = 1e-33
Identities = 58/407 (14%), Positives = 105/407 (25%), Gaps = 71/407 (17%)
Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTA 178
++ + G Y G+E LE + + +G V G A +
Sbjct: 61 WAGMMIGDEAYAGSENFYHLE-----KTVKEL------FGFKHIVPTHQGRGAENLLSQL 109
Query: 179 ILKPHDRIMG---LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 235
+KP + G +G G +D + L
Sbjct: 110 AIKPGQYVAGNMYFTTTRFHQEKNGA-----TFVDIVRDEAHDASLNLPFKGDIDLNKLA 164
Query: 236 K---------TAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHIS----- 281
A + + + + ++A G + D
Sbjct: 165 TLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYF 224
Query: 282 ---------GLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 332
+ +V + F Y D T + K GG + D + + +
Sbjct: 225 IKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCM-NDEEMFSAAKELVV 283
Query: 333 NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG 392
GG + +A+ L+ A E Y V R L +L E G +V
Sbjct: 284 VYEGMPSYGGLAGRDMEAMAIGLREAMQYE---YIEHRVKQVRYLGDKLREAGVPIVEPT 340
Query: 393 SDNHLVLVDLRPM--------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444
H V +D R + I + + + + G
Sbjct: 341 -GGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPK 399
Query: 445 P-----AMTTRGFSEKEFVAIADFIHE---------GVEITLEAKKL 477
+ R ++ +AD I + G+ E K+L
Sbjct: 400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQL 446
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 60.6 bits (145), Expect = 1e-10
Identities = 58/357 (16%), Positives = 110/357 (30%), Gaps = 42/357 (11%)
Query: 100 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 157
S+ T + + +A+ ++ G YG + I+ELE R A
Sbjct: 5 RSDTVTKPTEEMRKAM--------AQAEVGDDVYGEDPTINELE-----RLAAET---FG 48
Query: 158 KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 217
K P SG+ N A + D ++ H G M V + ++
Sbjct: 49 KEAALFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN 107
Query: 218 MPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMM 275
D+ + + +T+++ + + IA G + +
Sbjct: 108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 167
Query: 276 DMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 333
D A I AS V + Y D V K L P G ++ +D
Sbjct: 168 DGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRD----------FIE 217
Query: 334 AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 393
+ G+ + + N R LA +L E+GY +
Sbjct: 218 RARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDV 277
Query: 394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 450
++V++ + ++ + L + + N A+ IR+ + +R
Sbjct: 278 KTNMVILRTDNLKVNAHGFIEALRNSGVLAN---------AVSDTEIRLVTHKDVSR 325
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 51.5 bits (122), Expect = 2e-07
Identities = 46/307 (14%), Positives = 91/307 (29%), Gaps = 39/307 (12%)
Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
G + L + L+ + P+S + +A K + + +
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIAT---PISTGMSISLCLSAARKKYGSNVVI--- 160
Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-----TAILFRPKLII 247
+ SH G ++ + LD V + +E + RP ++
Sbjct: 161 -YPYASHKSPIKAVSFVGMNMRL--VETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 217
Query: 248 AGASAYPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAAS--VVADPFKYCDVVTTTTH 304
PR+ D + +I + +++ A+ + D V +++
Sbjct: 218 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSD 277
Query: 305 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
K+L P GG + + D + G + V L S +
Sbjct: 278 KNLLTPIGGGLVYSTDA--------EFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYL 329
Query: 365 VYQNKVVSNCRALASRLVEL----GYKL----------VSGGSDNHLVLVDLRPMGIDGA 410
++ + L L +L G K +S SD + L + + G
Sbjct: 330 ELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP 389
Query: 411 RVEKILD 417
R K D
Sbjct: 390 RGIKKTD 396
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 50.2 bits (118), Expect = 3e-07
Identities = 56/385 (14%), Positives = 120/385 (31%), Gaps = 31/385 (8%)
Query: 92 QFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET--LCQK--R 147
F +++ + + + +A+ ++ +G + +DE++T +
Sbjct: 1 DFINIDPLQTGGKLTEEARQAL-----LEWGDGYSVCDFCTTG-RLDEIKTPPIHDFIHN 54
Query: 148 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR 207
L F V A F V ++ K ++ + H
Sbjct: 55 QLPKF---LGCDVARVTN-GAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNI 110
Query: 208 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIAD 267
+ + ++ +L LI Y D ++ ++
Sbjct: 111 ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLA---LITYPDGNYGNLPDVKKIAKVCS 167
Query: 268 AVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL 327
L+++ A+ G + S+ D + + HKS+ + K+ + L
Sbjct: 168 EYDVPLLVNGAYAIGRMPVSL---KEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVL 224
Query: 328 ESAIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG 385
+ N L TI L H + E ++ V R A+ + +LG
Sbjct: 225 RRSEKYKNKEVELLGCTARGATIITLMASFPHVR--ERIKRWDEEVEKARRFAAEMEKLG 282
Query: 386 YKLVSGGSDNHLVLVDLRPMGID-GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444
K + NH ++ + + + + L + G K PG R
Sbjct: 283 IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIK----PGLTRYFK 338
Query: 445 PAMTTRGFSEKEFVAIADFIHEGVE 469
++T G S++E + + E +E
Sbjct: 339 --LSTYGLSDEEVDYVLNAFKEIIE 361
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 36.3 bits (83), Expect = 0.008
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 16/155 (10%)
Query: 167 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 226
S AN ++ +L D I+ L H + + +R + + + RL E+
Sbjct: 113 SCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAR 172
Query: 227 GLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY-PRMRQIADAVGALLMMDMAHISGLV- 284
+L + G + + +AD AL+M+D +H G V
Sbjct: 173 EAGARHVL----------IATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVG 222
Query: 285 ----AASVVADPFKYCDVVTTTTHKSLRGPRGGMI 315
+ D D++T T K+L G GG
Sbjct: 223 ENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYT 257
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA
{Deinococcus radiodurans [TaxId: 1299]}
Length = 201
Score = 27.5 bits (60), Expect = 3.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 374 CRALASRLVELGYKLVSGGS 393
R R VEL KL+ GGS
Sbjct: 182 IRHQVRRQVELTAKLLEGGS 201
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 25.1 bits (55), Expect = 6.9
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 160 GVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 219
G+ + G A ++ RI+ ++ H + + I+ ++MP
Sbjct: 22 GIICSLMRGGIA----ERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 77
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 90
Score = 25.1 bits (55), Expect = 7.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 369 KVVSNCRALASRLVELGYKLV-----SGGSDNHL-VLVDLRPMGID 408
+V R + ++E ++LV GSD L + VD +P GI
Sbjct: 9 TIVELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVD-KPEGIT 53
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 26.3 bits (57), Expect = 9.6
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 238 AILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMD 276
A + P AG ++ + I L + D
Sbjct: 189 AFIVEPIQGEAGVIVPSDNY-LQGVYDICKKYNVLFVAD 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.402
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,924,617
Number of extensions: 89335
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 17
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)