Query 010009
Match_columns 520
No_of_seqs 217 out of 1848
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 19:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 8.1E-91 1.7E-95 714.5 35.8 499 15-519 1-507 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 1.4E-77 3.1E-82 625.6 37.0 410 14-480 4-436 (451)
3 PRK11412 putative uracil/xanth 100.0 1.5E-72 3.2E-77 595.5 42.0 403 26-480 8-430 (433)
4 TIGR03616 RutG pyrimidine util 100.0 1E-67 2.3E-72 561.4 43.7 414 1-480 1-428 (429)
5 PRK10720 uracil transporter; P 100.0 1.1E-66 2.4E-71 553.8 40.5 395 14-487 2-413 (428)
6 TIGR00801 ncs2 uracil-xanthine 100.0 1.5E-64 3.3E-69 536.7 39.8 392 22-476 1-415 (415)
7 TIGR03173 pbuX xanthine permea 100.0 2.2E-64 4.7E-69 535.0 39.3 388 32-478 1-406 (406)
8 PF00860 Xan_ur_permease: Perm 100.0 1E-61 2.3E-66 511.6 24.5 371 26-431 1-386 (389)
9 COG2252 Xanthine/uracil/vitami 100.0 5.2E-39 1.1E-43 333.7 32.5 383 12-478 5-412 (436)
10 TIGR00843 benE benzoate transp 99.9 8.2E-25 1.8E-29 227.3 32.5 315 27-400 22-349 (395)
11 PF03594 BenE: Benzoate membra 99.9 1.7E-21 3.7E-26 199.2 31.3 314 27-399 6-332 (378)
12 COG0659 SUL1 Sulfate permease 99.9 1.9E-21 4.2E-26 212.4 31.9 319 25-403 21-370 (554)
13 COG3135 BenE Uncharacterized p 99.9 5.3E-20 1.1E-24 184.3 29.6 315 27-400 21-348 (402)
14 TIGR00815 sulP high affinity s 99.8 2.7E-18 5.8E-23 189.7 33.2 324 25-392 14-369 (563)
15 PRK11660 putative transporter; 99.8 2.5E-18 5.4E-23 190.1 32.9 324 24-392 28-389 (568)
16 PF00916 Sulfate_transp: Sulfa 99.5 1.7E-13 3.8E-18 138.3 11.9 238 140-407 1-273 (280)
17 KOG0236 Sulfate/bicarbonate/ox 99.4 4.8E-11 1E-15 133.7 24.8 312 43-394 92-440 (665)
18 TIGR00834 ae anion exchange pr 98.6 4.6E-05 1E-09 87.3 32.0 318 64-407 402-799 (900)
19 KOG1172 Na+-independent Cl/HCO 98.5 7.2E-05 1.6E-09 84.1 26.3 345 34-406 364-774 (876)
20 PF11840 DUF3360: Protein of u 97.7 0.013 2.7E-07 60.6 22.8 349 13-410 53-419 (492)
21 PF00955 HCO3_cotransp: HCO3- 97.2 0.00025 5.4E-09 77.2 3.7 200 191-407 256-480 (510)
22 TIGR00815 sulP high affinity s 81.9 21 0.00045 39.9 13.3 117 278-405 18-150 (563)
23 TIGR00843 benE benzoate transp 80.7 70 0.0015 34.2 15.9 131 65-227 256-393 (395)
24 COG0659 SUL1 Sulfate permease 71.9 25 0.00054 39.4 10.2 121 278-409 25-155 (554)
25 PRK11660 putative transporter; 68.9 46 0.00099 37.3 11.6 114 278-402 33-153 (568)
26 PF13792 Sulfate_tra_GLY: Sulf 68.5 13 0.00028 30.8 5.3 61 24-95 15-75 (84)
27 PF03594 BenE: Benzoate membra 63.3 2.1E+02 0.0045 30.4 17.0 141 50-227 230-377 (378)
28 TIGR00801 ncs2 uracil-xanthine 53.6 1.2E+02 0.0027 32.4 11.1 76 65-162 271-346 (415)
29 PRK11412 putative uracil/xanth 50.5 85 0.0019 34.0 9.3 77 64-162 276-352 (433)
30 TIGR03173 pbuX xanthine permea 46.0 4E+02 0.0086 28.4 14.5 75 65-161 255-329 (406)
31 TIGR00822 EII-Sor PTS system, 44.6 95 0.0021 31.4 7.9 40 370-410 163-202 (265)
32 PF00860 Xan_ur_permease: Perm 41.8 3.7E+02 0.008 28.4 12.4 96 49-167 254-350 (389)
33 COG4129 Predicted membrane pro 40.9 4E+02 0.0087 27.9 12.1 66 65-143 13-78 (332)
34 PLN00028 nitrate transmembrane 39.5 5.2E+02 0.011 27.8 14.5 39 51-89 63-105 (476)
35 TIGR00834 ae anion exchange pr 39.5 3.9E+02 0.0084 31.9 12.8 187 273-478 367-615 (900)
36 PRK10489 enterobactin exporter 39.4 4.4E+02 0.0096 27.4 12.6 69 23-92 17-89 (417)
37 PLN02776 prenyltransferase 32.2 6.2E+02 0.013 26.6 13.2 12 212-223 124-135 (341)
38 TIGR01299 synapt_SV2 synaptic 30.6 9E+02 0.02 28.2 14.0 44 46-90 190-237 (742)
39 PRK10720 uracil transporter; P 30.6 2.1E+02 0.0046 30.8 8.5 77 65-163 262-338 (428)
40 PRK11663 regulatory protein Uh 30.1 3.5E+02 0.0076 28.5 10.1 39 43-82 43-81 (434)
41 PF01034 Syndecan: Syndecan do 29.8 21 0.00046 27.9 0.5 34 462-503 17-50 (64)
42 PRK15034 nitrate/nitrite trans 25.6 9.1E+02 0.02 26.4 15.3 125 25-161 32-164 (462)
43 PF05977 MFS_3: Transmembrane 25.2 9.6E+02 0.021 26.6 17.2 128 21-162 216-345 (524)
44 PRK03893 putative sialic acid 23.5 9E+02 0.019 25.6 13.0 64 24-88 18-88 (496)
45 COG1457 CodB Purine-cytosine p 23.4 9.9E+02 0.021 26.1 24.1 49 37-88 27-81 (442)
46 PRK05122 major facilitator sup 22.9 8E+02 0.017 25.1 11.1 61 31-91 20-87 (399)
47 PHA03255 BDLF3; Provisional 22.7 1.7E+02 0.0037 27.4 5.0 32 2-37 165-196 (234)
48 KOG4085 Uncharacterized conser 22.0 1.7E+02 0.0038 26.7 4.8 44 350-397 29-72 (175)
49 PF13142 DUF3960: Domain of un 20.8 45 0.00097 27.1 0.7 41 472-512 24-73 (87)
50 PRK15402 multidrug efflux syst 20.2 7.4E+02 0.016 25.5 10.2 63 24-87 11-80 (406)
51 PRK10739 putative antibiotic t 20.1 3.7E+02 0.008 25.8 7.1 30 146-175 156-192 (197)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.1e-91 Score=714.53 Aligned_cols=499 Identities=62% Similarity=1.074 Sum_probs=472.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhH-HHHHHHHHHHHHHHHHHHHHhCCCcceEEech
Q 010009 15 LEYCIDSNPPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDK-ARVIQTLLFVSGINTLLQALFGTRLPAVVGGS 93 (520)
Q Consensus 15 ~~~~~~e~~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~-~~li~at~l~sGi~Tllq~~~G~rlPiv~gps 93 (520)
+.|+++|+|||...+++|+||++.|.+.++++|.+++.++|.+++|. +.+|+++++++||.|++|++||.|||+++|+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 36999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhccccccCcch----hhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHh
Q 010009 94 FAYVIPIAYIINDSSLQRITDDH----ERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGL 169 (520)
Q Consensus 94 fa~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l 169 (520)
|+|+++..++.....+.+..+++ +.|+..+++++|++++++.+++++|++|+.+++.|++.|+.+.+.++++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 99999999998866666644333 37999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccchhhhHHHHHHHHHHHHHh--hhccC-CCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCcccccc
Q 010009 170 FQRGFPLLGNCVEIGIPMLLLVIGLSQY--LKHVR-PFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISC 246 (520)
Q Consensus 170 ~~~~~~~~~~~~~i~l~~l~l~i~l~~~--~~~~~-p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~ 246 (520)
+..+.+.++.||.++++.+++.+++++| .++.. ..+++++++++++++++.+.|++|.++..++.+|.++..++.++
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 53321 23457789999999999999999999999999998888888999
Q ss_pred ccCccCcCCCCCccccCccccccCCccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHH
Q 010009 247 RTDRANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILL 326 (520)
Q Consensus 247 ~vd~~~~i~~~p~~~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~sil 326 (520)
|+|.+..++++||+.+|+|++||.|.||++....++...+++++||+|++.+++|.+..++++++.+|||+..||+++++
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL 320 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL 320 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred hhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhhh
Q 010009 327 DGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQF 406 (520)
Q Consensus 327 aglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~~ 406 (520)
+|++|+..++|.++||+|+++.||++||++.+++|.|+++++++.||++++++||.|++||++++.|+++...|+++++.
T Consensus 321 ~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf 400 (510)
T KOG1292|consen 321 AGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQF 400 (510)
T ss_pred HHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEeehhHHHhhhhhhhhhhhccCCCCCCcccccccchhHHHHHHhcchhHHHHHHHHHHhhcCCCcCccccc
Q 010009 407 TNMNCMRNLVITGLSLFLGISIPQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVGLIVAVFLDNTLEVEKSKKDR 486 (520)
Q Consensus 407 v~~~~~rn~~Ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~~~~~~~ 486 (520)
+|+++.||.+|+|+|+++|+.+|++|+++ .+|+||+.+|++++++.++++.+.+|+++|++||++.|+. +||||
T Consensus 401 ~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~ga-tr~~R 474 (510)
T KOG1292|consen 401 VDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPGA-TREQR 474 (510)
T ss_pred eccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCCC-ChHhc
Confidence 99999999999999999999999999985 5689999999999999999999999999999999999954 89999
Q ss_pred CCcccccccccCCCCCCCccccCCcccccCCCC
Q 010009 487 GMPWWVKFRTFRGDNRNEEFYTLPFNLNRFFPP 519 (520)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (520)
|+++|.+.++.+.|.++|++|+||+++||++|+
T Consensus 475 G~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~ 507 (510)
T KOG1292|consen 475 GLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPR 507 (510)
T ss_pred CCcchhccccccCCccccccccCcHHHHhhccc
Confidence 999999999999999999999999999999996
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-77 Score=625.63 Aligned_cols=410 Identities=31% Similarity=0.541 Sum_probs=380.3
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceE
Q 010009 14 DLEYCIDSNPPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAV 89 (520)
Q Consensus 14 ~~~~~~~e~~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv 89 (520)
+.....|||+|+.|.+++|+||+++|+++.+++|++++++.++++||+++++|+++++||++|++|.+ +|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~ 83 (451)
T COG2233 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSY 83 (451)
T ss_pred cccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCee
Confidence 34556788889999999999999999999999999999999999999999999999999999999997 46699999
Q ss_pred EechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHH-HHhhhcCccchHHHHHHHHHH
Q 010009 90 VGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWG-LFSRFFSPLGIAPVVGLVGLG 168 (520)
Q Consensus 90 ~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~-~l~~~~Pp~V~G~~v~lIGl~ 168 (520)
+|+||+|++++..+..+++ .+.+.++|+++++|+++++++.. .+ |++|+|||+|+|.++++||++
T Consensus 84 lG~sFafi~p~i~~~~~~g------------~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~IGls 149 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG------------DGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVIGLS 149 (451)
T ss_pred EechHHHHHHHHHHHhccC------------CchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeeehhh
Confidence 9999999999988876543 35899999999999999999875 46 999999999999999999999
Q ss_pred hHHhhhccccc--------------hhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCC
Q 010009 169 LFQRGFPLLGN--------------CVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGA 234 (520)
Q Consensus 169 l~~~~~~~~~~--------------~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~ 234 (520)
|++.+++++.+ +..+++.+++++++++++.|++ +|+.++|+|+++||++++.+|.
T Consensus 150 L~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g~--------~~~i~ILiGlv~G~~la~~~G~--- 218 (451)
T COG2233 150 LAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKGF--------LRRIPILIGLVVGYLLALFMGM--- 218 (451)
T ss_pred hHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHHhCC---
Confidence 99999876531 4568888888888888887655 7999999999999999999973
Q ss_pred CCCCCCccccccccCccCcCCCCCccccCccccccCCccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCC
Q 010009 235 YRGKPYTTQISCRTDRANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLS 314 (520)
Q Consensus 235 ~~~~~~~~~~~~~vd~~~~i~~~p~~~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~ 314 (520)
+|++. +.++|||++|.+++|+. +||+.+++++++++++.+.|++|++.|+++.++++..++++++
T Consensus 219 -------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~ 283 (451)
T COG2233 219 -------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLR 283 (451)
T ss_pred -------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccc
Confidence 57775 78999999999999998 9999999999999999999999999999999998776679999
Q ss_pred cchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHH
Q 010009 315 RGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFG 394 (520)
Q Consensus 315 r~l~~dGl~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g 394 (520)
|++++||++++++|+||+.|+|||+ ||+|+++.||++||++..++++++++++++||+++++++||.||+||+.+++||
T Consensus 284 rg~~aDGlat~iag~fg~~p~Ttfa-qNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG 362 (451)
T COG2233 284 RGLLADGLATLIAGLFGGFPNTTFA-QNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFG 362 (451)
T ss_pred cceeeccHHHHHHHhcCCCCCCchh-hceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhhccccCCc-cEEeehhHHHhhhhh---hhhhhhccCCCCCCcccccccchhHHHHHHhcchhHHHHHHH
Q 010009 395 LVASVGLSFLQFTNMNCMR-NLVITGLSLFLGISI---PQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVGLIVA 470 (520)
Q Consensus 395 ~i~~~Gi~~l~~v~~~~~r-n~~Ivg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~a 470 (520)
++..+|+|++.+.|+|++| |.+|+++|+.+|++. |+++++ +|++++.+++||+++|+++|
T Consensus 363 ~Ia~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~----------------~p~~~~~l~~sGia~g~i~A 426 (451)
T COG2233 363 MIAASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQ----------------LPAWLRPLLSSGIALGTLTA 426 (451)
T ss_pred HHHHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhh----------------CcHHHHHHHhccHHHHHHHH
Confidence 9999999999999998756 999999999999994 888887 69999999999999999999
Q ss_pred HHHhhcCCCc
Q 010009 471 VFLDNTLEVE 480 (520)
Q Consensus 471 iiLn~~~~~~ 480 (520)
++||+++|++
T Consensus 427 IvLNlll~~~ 436 (451)
T COG2233 427 IVLNLLLPGE 436 (451)
T ss_pred HHHHHhcccc
Confidence 9999999953
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=1.5e-72 Score=595.46 Aligned_cols=403 Identities=19% Similarity=0.291 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHh
Q 010009 26 AETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIIN 105 (520)
Q Consensus 26 ~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~ 105 (520)
.+++++|+||+++|+.+++++|+++++++|+|++|+.+++|+++++|||+|++|+++|+|||++||+||+|++++++++.
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999888863
Q ss_pred hccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhccccc------
Q 010009 106 DSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLGN------ 179 (520)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~~------ 179 (520)
..... +. .+..-++..+|+++++|++++++|++++++|++|+|||+|+|+++++||+++++.+++++.+
T Consensus 88 ~~~~~-g~----~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~ 162 (433)
T PRK11412 88 GEASR-GT----PINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIA 162 (433)
T ss_pred ccccc-Cc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCc
Confidence 21100 00 01123444566799999999999999999999999999999999999999999998875421
Q ss_pred ---------hhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCccccccccCc
Q 010009 180 ---------CVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRTDR 250 (520)
Q Consensus 180 ---------~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~vd~ 250 (520)
++.+++.++.+++.++++.|+ ++|++++|+|+++||+++.... + .|+
T Consensus 163 ~~~~~~~~~~~~~a~~~l~~il~~~~~~~g--------~~~~~svLiGiv~G~v~a~~~~--g--------------~d~ 218 (433)
T PRK11412 163 DPNGKIQLPPFGLSVAVMCLVLAMIIFLPQ--------RIARYSLLVGTIVGWILWAFCF--P--------------SSH 218 (433)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHh--C--------------CCc
Confidence 234566666666666666654 4899999999999999865332 1 144
Q ss_pred cCcCCCCCccccCccccccCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhh
Q 010009 251 ANLISTAPWFKFPYPLQWGPPT-FSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGL 329 (520)
Q Consensus 251 ~~~i~~~p~~~~P~~~~~g~p~-f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silagl 329 (520)
+. +.+++|. +++||.|. ||+.+++++++.+++.+.|++||+.++++..+++..++++++|++.+||++|+++|+
T Consensus 219 ~~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~lagl 293 (433)
T PRK11412 219 SL-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVP 293 (433)
T ss_pred ch-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHh
Confidence 43 5678885 34588895 999999999999999999999999999999887655578999999999999999999
Q ss_pred cCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhhhccc
Q 010009 330 FGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQFTNM 409 (520)
Q Consensus 330 fG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~~v~~ 409 (520)
||+.|+|+|+ ||+|+++.||++||++..++|+++++++|+||+++++++||.||+||+++++|+++..+|+|+++++|+
T Consensus 294 fg~~p~tt~s-qNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~~~ 372 (433)
T PRK11412 294 LAVIPFSPFV-SSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQITF 372 (433)
T ss_pred cCCCCCCchh-hhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEeehhHHHhhhhh---h-hhhhhccCCCCCCcccccccchhHHHHHHhcchhHHHHHHHHHHhhcCCCc
Q 010009 410 NCMRNLVITGLSLFLGISI---P-QFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVGLIVAVFLDNTLEVE 480 (520)
Q Consensus 410 ~~~rn~~Ivg~sl~~Gl~~---p-~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~ 480 (520)
| +||.+|+|+|+.+|++. | +++++ +|++++++++||+++|+++|++||+++|+|
T Consensus 373 ~-~rn~~ivg~sl~~Glg~~~~p~~~~~~----------------~P~~~~~~l~sgi~~g~l~AilLn~~~~~~ 430 (433)
T PRK11412 373 T-ARNIYRLALPLFVGIFLMALPPVYLQD----------------LPLTLRPLLSNGLLVGILLAVLMENLIPWE 430 (433)
T ss_pred C-cccchhhHHHHHHHhhHHhCCHHHHHH----------------ChHHHHHHHcCcHHHHHHHHHHHHhhcCcc
Confidence 7 69999999999999996 6 58877 699999999999999999999999999963
No 4
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=1e-67 Score=561.38 Aligned_cols=414 Identities=24% Similarity=0.375 Sum_probs=357.1
Q ss_pred CCCCCCCCCCC----ccCcccccCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH
Q 010009 1 MAEYSHPPMDQ----LQDLEYCIDSNPPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINT 76 (520)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~e~~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~T 76 (520)
|+|.-.|.+.+ +++..|++|||||+++++++|+||+++|+++++++|+++ |+|++ +++++||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~T 69 (429)
T TIGR03616 1 MAEPWFPKWKPKQGSLEHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGT 69 (429)
T ss_pred CCCccCCCceeccccCcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHH
Confidence 78888887544 355679999999999999999999999999999999996 68874 6899999999
Q ss_pred HHHH-HhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhH---HHHhhh
Q 010009 77 LLQA-LFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVW---GLFSRF 152 (520)
Q Consensus 77 llq~-~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~---~~l~~~ 152 (520)
++|+ .+|+|+|+++|+||+|++++..+..... . + . ..++++++|+++++|++++++++++.+ ++++|+
T Consensus 70 llQ~~~~G~rlP~v~G~sf~f~~~~~~~~~~~~-~-~--~----~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~ 141 (429)
T TIGR03616 70 LLFFLITGGRVPSYLGSSAAFVGAVIAATGYNG-Q-G--T----NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERL 141 (429)
T ss_pred HHHHHHhCCCceeEEcCcHHHHHHHHHHHhhcc-c-C--C----cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 9997 4799999999999999998766532111 0 0 0 136899999999999999999998665 899999
Q ss_pred cCccchHHHHHHHHHHhHHhhhccccc----hhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHH
Q 010009 153 FSPLGIAPVVGLVGLGLFQRGFPLLGN----CVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVI 228 (520)
Q Consensus 153 ~Pp~V~G~~v~lIGl~l~~~~~~~~~~----~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~ 228 (520)
|||+|+|.++++||+++++.++++.+. +| .++.+++.+++++++.|++ +|++++|+|+++||++++.
T Consensus 142 fpPvV~G~vv~lIGlsL~~vg~~~~~~~~~~~~-~al~tl~~i~l~~l~~~~~--------l~~~avLiGivvG~iva~~ 212 (429)
T TIGR03616 142 MPPVVTGAVVMAIGLNLAPIAVKSVSASGFDSW-MAVLTILCIGAVAVFTRGM--------LQRLLILVGLIAAYLAYFI 212 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhccccccccH-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887542 33 5666766666667777654 7999999999999999988
Q ss_pred HHhhCCCCCCCCccccccccCccCcCCCCCccccCccccccCCccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCC
Q 010009 229 LTASGAYRGKPYTTQISCRTDRANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPP 308 (520)
Q Consensus 229 ~g~~~~~~~~~~~~~~~~~vd~~~~i~~~p~~~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~ 308 (520)
++.. +.. .+.+|++. +.+++|+++| +|+.|+||++.++.+++.++++++|++||+.++++..+++.
T Consensus 213 l~~~--~g~-------~~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~- 278 (429)
T TIGR03616 213 LTNV--FGL-------GKAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNL- 278 (429)
T ss_pred Hhhh--cCC-------CccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC-
Confidence 6421 110 01357664 6778999999 57788999999999999999999999999999999987543
Q ss_pred CCccCCcchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHH
Q 010009 309 PAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAAL 388 (520)
Q Consensus 309 ~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~ 388 (520)
+++++|++.+||++|+++|++|+.|.|+|+ ||+|+++.||++||++...+++++++++|+||++++++.||.||+||+
T Consensus 279 -~~~i~r~l~adGl~t~~agl~g~~p~tt~~-en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~ 356 (429)
T TIGR03616 279 -DPYMGRAFVGDGLATMLSGSVGGTGVTTYA-ENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGA 356 (429)
T ss_pred -CchhccchhhhhHHHHHHHhcCCCCCccee-eeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 347999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhh--hhccccCCccEEeehhHHHhhhhhhhhhhhccCCCCCCcccccccchhHHHHHHhcchhHHH
Q 010009 389 YCVLFGLVASVGLSFL--QFTNMNCMRNLVITGLSLFLGISIPQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVG 466 (520)
Q Consensus 389 li~~~g~i~~~Gi~~l--~~v~~~~~rn~~Ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g 466 (520)
++++|+++..+|+|++ +++|++++||.+|+|+|+.+|++.- +..++.+++||+++|
T Consensus 357 ~i~~fg~i~~~Gi~~l~~~~~d~~~~rn~~ivg~sl~~g~g~~----------------------~~~~~~~~~s~i~~~ 414 (429)
T TIGR03616 357 SIVVFGLIAVAGARIWVQNKVDLTQNGNLIMVAVTLVLGAGDF----------------------ALTIGAFTLGGIGTA 414 (429)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCccceeehhHHHHHHHhHHH----------------------HHHHHHHhhCcHHHH
Confidence 9999999999999988 6889988889999999999999751 345678899999999
Q ss_pred HHHHHHHhhcCCCc
Q 010009 467 LIVAVFLDNTLEVE 480 (520)
Q Consensus 467 ~l~aiiLn~~~~~~ 480 (520)
+++|++||+++|++
T Consensus 415 ~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 415 TFGAIVLNALLNRD 428 (429)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999953
No 5
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=1.1e-66 Score=553.76 Aligned_cols=395 Identities=25% Similarity=0.441 Sum_probs=347.6
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhC-CCcceEEec
Q 010009 14 DLEYCIDSNPPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFG-TRLPAVVGG 92 (520)
Q Consensus 14 ~~~~~~~e~~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G-~rlPiv~gp 92 (520)
+..|++|||||+++.+++|+||+++|+.+++++|+++ |+|+++ ++++||++|++|++.+ .|+|+++|+
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeC
Confidence 5789999999999999999999999999999999985 788743 7899999999999864 699999999
Q ss_pred hhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhh--hh-HHHHhhhcCccchHHHHHHHHHHh
Q 010009 93 SFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYS--QV-WGLFSRFFSPLGIAPVVGLVGLGL 169 (520)
Q Consensus 93 sfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~--g~-~~~l~~~~Pp~V~G~~v~lIGl~l 169 (520)
||+|++++..+.. ++||+++|+++++|+++++++++ ++ ++|++|+|||.|+|.++++||+++
T Consensus 71 sfa~i~~~~~~~~---------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L 135 (428)
T PRK10720 71 SFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLEL 135 (428)
T ss_pred cHHHHHHHHHHHH---------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 9999988876642 36999999999999999999987 22 679999999999999999999999
Q ss_pred HHhhhcccc-----------chhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCC
Q 010009 170 FQRGFPLLG-----------NCVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGK 238 (520)
Q Consensus 170 ~~~~~~~~~-----------~~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~ 238 (520)
.+.++++.+ .++.+++.+++++++++++.|+ ++|++++++|+++||++++.+|.
T Consensus 136 ~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~kg--------~~~~~~iLigIvvG~ila~~lG~------- 200 (428)
T PRK10720 136 AGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFRG--------FLAIIPILIGVLVGYALSFAMGM------- 200 (428)
T ss_pred HHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhcc--------HHHHhHHHHHHHHHHHHHHHhcC-------
Confidence 999876542 1356777777777766666654 47899999999999999998874
Q ss_pred CCccccccccCccCcCCCCCccccCccccccCCccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchh
Q 010009 239 PYTTQISCRTDRANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIG 318 (520)
Q Consensus 239 ~~~~~~~~~vd~~~~i~~~p~~~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~ 318 (520)
.|++. +.+++|+++|. |+.|+||+..+..+++.+++.++|++|++.++++..+++..+++++||++.
T Consensus 201 ---------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~ 267 (428)
T PRK10720 201 ---------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 267 (428)
T ss_pred ---------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHh
Confidence 24432 56688999994 567899999999999999999999999999999988765445679999999
Q ss_pred hhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHH
Q 010009 319 WQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVAS 398 (520)
Q Consensus 319 ~dGl~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~ 398 (520)
+||++|+++|+||++|+|+|+ ||+|+++.||++||++..++++++++++|+||++++++.||.||+||+.+++|+++..
T Consensus 268 adGlatii~glfG~~p~tty~-en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~ 346 (428)
T PRK10720 268 ANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGA 346 (428)
T ss_pred hhhHHHHHHHhcCCCCccccc-cccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhh--hhccccCCccEEeehhHHHhhhhhhhhhhhccCCCCCCcccccccchhHHHHHHhcchhHHHHHHHHHHhhc
Q 010009 399 VGLSFL--QFTNMNCMRNLVITGLSLFLGISIPQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVGLIVAVFLDNT 476 (520)
Q Consensus 399 ~Gi~~l--~~v~~~~~rn~~Ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~ 476 (520)
+|+|.+ ++.|++++||.+|+|+|+.+|++.... + ++.++.+|+..|+++|++||++
T Consensus 347 ~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~--------------------~--~~~~~~~gi~~g~~~ai~Lnll 404 (428)
T PRK10720 347 SGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV--------------------N--IGAAELKGMALATIVGIGLSLI 404 (428)
T ss_pred HHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH--------------------H--HHHHhcCcHHHHHHHHHHHHHH
Confidence 999999 789998889999999999999985321 1 4678889999999999999999
Q ss_pred CCCcCcccccC
Q 010009 477 LEVEKSKKDRG 487 (520)
Q Consensus 477 ~~~~~~~~~~~ 487 (520)
+|. +||.|+
T Consensus 405 l~~--~~~~~~ 413 (428)
T PRK10720 405 FKL--ISKLRP 413 (428)
T ss_pred hcc--cccccC
Confidence 994 345554
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=1.5e-64 Score=536.66 Aligned_cols=392 Identities=30% Similarity=0.509 Sum_probs=352.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEechhhhHH
Q 010009 22 NPPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGT---RLPAVVGGSFAYVI 98 (520)
Q Consensus 22 ~~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~---rlPiv~gpsfa~~~ 98 (520)
|||+++.+.+|+||+++|+++++++|++++++. +|++|+.++++++++++|++|++|+++.+ |+|.++|++|+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 689999999999999999999999999999999 99999999999999999999999998543 36999999999998
Q ss_pred HHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhh--h-hHHHHhhhcCccchHHHHHHHHHHhHHhhhc
Q 010009 99 PIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYS--Q-VWGLFSRFFSPLGIAPVVGLVGLGLFQRGFP 175 (520)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~--g-~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~ 175 (520)
+......+ ++|++++|+++++|+++++++++ + .++|++|+|||.|+|.++++||+++++.+++
T Consensus 80 ~~~~~~~~--------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~ 145 (415)
T TIGR00801 80 PMIAIGSG--------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVK 145 (415)
T ss_pred HHHHHHhc--------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHH
Confidence 87655422 57999999999999999999985 3 4689999999999999999999999999887
Q ss_pred ccc--------------chhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCc
Q 010009 176 LLG--------------NCVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYT 241 (520)
Q Consensus 176 ~~~--------------~~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~ 241 (520)
+.+ .++.+++.++++++++.++.|+ ++|++++++|+++||++++.+|.
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g--------~~~~~aiLigiv~g~i~a~~lg~---------- 207 (415)
T TIGR00801 146 MAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKG--------FLKSISILIGILVGYILALFMGI---------- 207 (415)
T ss_pred HhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHcCC----------
Confidence 653 1245777777777666666654 47899999999999999998864
Q ss_pred cccccccCccCcCCCCCccccCccccccCCccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhh
Q 010009 242 TQISCRTDRANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQG 321 (520)
Q Consensus 242 ~~~~~~vd~~~~i~~~p~~~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dG 321 (520)
+|+++ +.++||+++|.+++|+ |+||+..+..++++++++++|++|+++++++.+++++++++++||++.+||
T Consensus 208 ------~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adG 279 (415)
T TIGR00801 208 ------VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADG 279 (415)
T ss_pred ------ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhh
Confidence 34443 5678999999888887 699999999999999999999999999999999876544788999999999
Q ss_pred hHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHh
Q 010009 322 IGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGL 401 (520)
Q Consensus 322 l~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi 401 (520)
++|+++|+||++|.|+|+ ||+|+++.||++||++..++++++++++|+||++++++.||.||+||+++++|+++..+|+
T Consensus 280 l~~i~aglfG~~p~t~~s-en~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi 358 (415)
T TIGR00801 280 LATLLAGLFGGFPNTTFA-QNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGI 358 (415)
T ss_pred HHHHHHHhcCCCCCcchh-hhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccCCccEEeehhHHHhhhhh---hhhhhhccCCCCCCcccccccchhHHHHHHhcchhHHHHHHHHHHhhc
Q 010009 402 SFLQFTNMNCMRNLVITGLSLFLGISI---PQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVGLIVAVFLDNT 476 (520)
Q Consensus 402 ~~l~~v~~~~~rn~~Ivg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~ 476 (520)
|.+.+.|+|++||.+|+|+|+.+|+++ |+++++ +| +++||+++|+++|++||++
T Consensus 359 ~~l~~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~----------------~p-----~~~~g~~~g~~~ai~Ln~~ 415 (415)
T TIGR00801 359 RILIRNKLDNRRNRNIIAASVGLGLGVTGVPDIFGN----------------FP-----LLLSGIALAGIVAILLNLI 415 (415)
T ss_pred HHHHhCccCcccceehHHHHHHHHHHHhccHHHHhh----------------Cc-----hhcccHHHHHHHHHHHhcC
Confidence 999999998789999999999999997 887765 46 7899999999999999975
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=2.2e-64 Score=534.98 Aligned_cols=388 Identities=34% Similarity=0.535 Sum_probs=349.5
Q ss_pred HHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHH----HhCCCcceEEechhhhHHHHHHHHhhc
Q 010009 32 AFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQA----LFGTRLPAVVGGSFAYVIPIAYIINDS 107 (520)
Q Consensus 32 GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~----~~G~rlPiv~gpsfa~~~~~~~i~~~~ 107 (520)
|+||+++|+++++++|++++++.|+|++|+..+++++++++|++|++|+ .+|+|+|+++|||++++++......+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999999997 46899999999999999877655421
Q ss_pred cccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhcccc---------
Q 010009 108 SLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLG--------- 178 (520)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~--------- 178 (520)
++|++++|+++++|++++++| ++++|++|+|||.++|.++++||+++.+.++++..
T Consensus 80 -------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~ 144 (406)
T TIGR03173 80 -------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFG 144 (406)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCccccc
Confidence 579999999999999999999 47899999999999999999999999998876542
Q ss_pred --chhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCccccccccCccCcCCC
Q 010009 179 --NCVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRTDRANLIST 256 (520)
Q Consensus 179 --~~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~vd~~~~i~~ 256 (520)
.++.+++.++++++++.++.| +++|++++++++++||++++.+|. .|++. +.+
T Consensus 145 ~~~~~~l~l~~l~~~il~~~~~~--------~~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~ 199 (406)
T TIGR03173 145 SPQNLGLALLTLVIILLLNRFGK--------GFLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAE 199 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHhh--------hHHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hcc
Confidence 134577777766655554444 347899999999999999998874 23332 556
Q ss_pred CCccccCccccccCCccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCc
Q 010009 257 APWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGS 336 (520)
Q Consensus 257 ~p~~~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~t 336 (520)
.||+.+|.+++|+.|+||+..+..++.+++++++|++|+.+++++..+++. +++++||++.+||++|+++|+||++|+|
T Consensus 200 ~~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~~-~~~~~~~~l~~~Gi~~i~aglfG~~p~t 278 (406)
T TIGR03173 200 APWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRPI-TEKDLAGGLRADGLGSALGGLFNTFPYT 278 (406)
T ss_pred CCeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CchhccchHHhccHHHHHHHHhCCCCCc
Confidence 789999988889999999999999999999999999999999999987543 4578999999999999999999999999
Q ss_pred cccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhhhccccCCccEE
Q 010009 337 TVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQFTNMNCMRNLV 416 (520)
Q Consensus 337 t~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~~v~~~~~rn~~ 416 (520)
+|+ ||++.++.||++||++..++++++++++++||++++++.||.+|+|++++++|+++..+|+|.+++.|++|+||.+
T Consensus 279 ~~~-~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~ 357 (406)
T TIGR03173 279 SFS-QNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLL 357 (406)
T ss_pred chh-hhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceeh
Confidence 998 9999999999999999999999999999999999999999999999999999999999999999999999878999
Q ss_pred eehhHHHhhhhh---hhhhhhccCCCCCCcccccccchhHHHHHHhcchhHHHHHHHHHHhhcCC
Q 010009 417 ITGLSLFLGISI---PQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVGLIVAVFLDNTLE 478 (520)
Q Consensus 417 Ivg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~ 478 (520)
|+|+++.+|++. |+++++ +|+.++++++||+++|+++|++||+++|
T Consensus 358 i~g~~~~~g~~~~~~p~~~~~----------------~p~~~~~~~~~~~~~g~~~ai~l~~~~p 406 (406)
T TIGR03173 358 IVAVSLGLGLGPTVVPEFFSQ----------------LPAWAQTLFSSGIAVGAISAILLNLLFN 406 (406)
T ss_pred hhHHHHHHHHHHHhhHHHHHH----------------ChHHHHHHHhCcHHHHHHHHHHHHhhcC
Confidence 999999999975 888877 6999999999999999999999999986
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=1e-61 Score=511.65 Aligned_cols=371 Identities=35% Similarity=0.576 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH-hCCCcceEEechhhhHHHHHHHH
Q 010009 26 AETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL-FGTRLPAVVGGSFAYVIPIAYII 104 (520)
Q Consensus 26 ~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~-~G~rlPiv~gpsfa~~~~~~~i~ 104 (520)
+||+++|+||+++|+|+++++|.+++++.|+ +++.+++++++++++|++|++|++ +|+|+|+++|+|+++++....+.
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 5899999999999999999999999998898 777789999999999999999999 89999999999999997322221
Q ss_pred hhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhccccch----
Q 010009 105 NDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLGNC---- 180 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~~~---- 180 (520)
.+. +++.++|++++|+++++|++++++++++.++|++|+|||.|.|.++++||+++.+.++++.+..
T Consensus 80 -g~~--------~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~ 150 (389)
T PF00860_consen 80 -GMA--------ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNP 150 (389)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---B
T ss_pred -ccc--------cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccc
Confidence 110 1234789999999999999999999999999999999999999999999999999988765422
Q ss_pred ----------hhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCccccccccCc
Q 010009 181 ----------VEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRTDR 250 (520)
Q Consensus 181 ----------~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~vd~ 250 (520)
..++..+++..+.++.+.+ +++|++++++|+++||++++.+|.. |+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ailigi~~g~i~~~~~g~~----------------~~ 206 (389)
T PF00860_consen 151 DGLLVGDGKNLGLAVLTLLFILLLSLFLK--------GFLRKGAILIGIIAGWIVAAILGVV----------------DF 206 (389)
T ss_dssp TT-B---HHHHHHHHHHHHHHHHHHHSSS--------TTTTTHHHHHHHHHHHHHHHHHHHT----------------TS
T ss_pred cccccccccccccccccchhhhhhhhhhh--------hhcccccchhhhhhhhhhhhccccc----------------cc
Confidence 2344455555555555544 4579999999999999999999853 33
Q ss_pred cCcCCCCCccccCccccccCCccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhc
Q 010009 251 ANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLF 330 (520)
Q Consensus 251 ~~~i~~~p~~~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglf 330 (520)
++.+.++||+++|.+++|++|.||+.+++.++.+++++++|++||+.++++.++++++++++++|++.+||++|+++|+|
T Consensus 207 ~~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~ 286 (389)
T PF00860_consen 207 SPSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLF 286 (389)
T ss_dssp SH-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhh
Confidence 32256789999999999999999999999999999999999999999999999987766899999999999999999999
Q ss_pred CCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhhhcccc
Q 010009 331 GTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQFTNMN 410 (520)
Q Consensus 331 G~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~~v~~~ 410 (520)
|++|+|+|+ ||+|+++.||++||++..++++++++++++||+++++++||.+|++|++++++|+++++|+|++++.|+|
T Consensus 287 G~~~~t~~~-en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~ 365 (389)
T PF00860_consen 287 GTSPTTTYS-ENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLD 365 (389)
T ss_dssp T---EEE-H-HHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred cCCCCcccc-ccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEeehhHHHhhhhhhhh
Q 010009 411 CMRNLVITGLSLFLGISIPQF 431 (520)
Q Consensus 411 ~~rn~~Ivg~sl~~Gl~~p~~ 431 (520)
|.||.+++++++.+|++++.+
T Consensus 366 ~~r~~~iv~~~l~~g~~i~~~ 386 (389)
T PF00860_consen 366 SARNAFIVGLSLPLGLSIAFG 386 (389)
T ss_dssp SHHHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHhHHHHHHHhcc
Confidence 899999999999999998643
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.2e-39 Score=333.75 Aligned_cols=383 Identities=16% Similarity=0.181 Sum_probs=301.4
Q ss_pred ccCcccccCCCC-CHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEE
Q 010009 12 LQDLEYCIDSNP-PWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVV 90 (520)
Q Consensus 12 ~~~~~~~~~e~~-~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~ 90 (520)
.-|++||++||. ..++|+++|+++|++|.|...++|.++++ .|+|. +.++.+|++.++++|++|+++ +|+|+.+
T Consensus 5 ~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~-ag~~~---~av~~AT~l~a~~gs~~mgl~-An~P~al 79 (436)
T COG2252 5 DLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGA-AGMPV---GAVFVATCLAAAIGSIAMGLY-ANLPIAL 79 (436)
T ss_pred HHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHh-cCCCc---hhHHHHHHHHHHHHHHHHHHH-HcCchhh
Confidence 347899999998 59999999999999999999999999998 47774 778899999999999999999 9999999
Q ss_pred ech---hhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCcc-------chHH
Q 010009 91 GGS---FAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPL-------GIAP 160 (520)
Q Consensus 91 gps---fa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~-------V~G~ 160 (520)
+|. .+|.+ ++++..++ .+||+++|+++++|+++++++++|+|+|++|.+|.. .+|.
T Consensus 80 apgmglnAfFa--ftvv~~~g------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGl 145 (436)
T COG2252 80 APGMGLNAFFA--FTVVLGMG------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGL 145 (436)
T ss_pred cchhhHHHHHH--HHHHHhcC------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 995 45554 33554454 579999999999999999999999999999999975 4666
Q ss_pred HHHHHHHHhHHhhhccc------c---c-hhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 010009 161 VVGLVGLGLFQRGFPLL------G---N-CVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILT 230 (520)
Q Consensus 161 ~v~lIGl~l~~~~~~~~------~---~-~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g 230 (520)
++++||+......+.+- + + ...++++++++++++ +.||+ +.+++++++..+++++++|
T Consensus 146 Fia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i----------~Gaili~i~~~t~~g~~~g 213 (436)
T COG2252 146 FIALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI----------KGAILIGILVTTILGIILG 213 (436)
T ss_pred HHHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc----------cHhhhHHHHHHHHHHHHhc
Confidence 66666665443322221 1 1 356777787777776 55654 8999999999999999998
Q ss_pred hhCCCCCCCCccccccccCccCcCCCCCccccCccccccCC--ccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCC-
Q 010009 231 ASGAYRGKPYTTQISCRTDRANLISTAPWFKFPYPLQWGPP--TFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATP- 307 (520)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vd~~~~i~~~p~~~~P~~~~~g~p--~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~- 307 (520)
.... . .+.....|... |...+.+.. ...+.....++.+.+++++|++|++.+++++++..+
T Consensus 214 ~~~~--~-------------~~~~~~~p~~~-~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~ 277 (436)
T COG2252 214 IDVH--F-------------GGLVGAPPSLS-PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDK 277 (436)
T ss_pred cccc--c-------------cccccCCCCcc-chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCC
Confidence 5310 0 00001111111 111122221 122455667789999999999999999999998643
Q ss_pred -CCCccCCcchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhH
Q 010009 308 -PPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFA 386 (520)
Q Consensus 308 -~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~g 386 (520)
++.++.+|.+.+|++++++++++|++|.|+|. |+.++++..|++...+.+++.+|++.+.+.| +...+|..+++
T Consensus 278 ~g~~~~~~~al~~D~v~t~~ga~~GtS~~t~yI-ESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~Ata 352 (436)
T COG2252 278 NGKMPRIGKALLADSVATVVGALFGTSTVTAYI-ESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYATA 352 (436)
T ss_pred CCCccccchHHHHhHHHHHHHHhcCCcchhhhh-hcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhhh
Confidence 34579999999999999999999999999999 9999999999999999999999999988777 99999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhhccccCCccEEeehhHHHhhhhhhhhhhhccCCCCCCcccccccchhHHHHHHhcchhHHH
Q 010009 387 ALYCVLFGLVASVGLSFLQFTNMNCMRNLVITGLSLFLGISIPQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVG 466 (520)
Q Consensus 387 g~li~~~g~i~~~Gi~~l~~v~~~~~rn~~Ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g 466 (520)
++++++ |.++. +.++++||+|..+ ++|.++... .+| +++-..+|++.|
T Consensus 353 paLi~v-G~lM~---~~v~~id~~d~~e------------a~PaF~tiv--------------~mp--lTySIa~Gia~G 400 (436)
T COG2252 353 PALIIV-GALML---SSVKQIDWSDFTE------------AVPAFLTIV--------------MMP--LTYSIADGIAFG 400 (436)
T ss_pred HHHHHH-HHHHH---hhhccCCchhhhh------------hhHHHHHHH--------------HHH--HHHHHHhhHHHH
Confidence 999985 66666 5556899988655 237666543 244 678889999999
Q ss_pred HHHHHHHhhcCC
Q 010009 467 LIVAVFLDNTLE 478 (520)
Q Consensus 467 ~l~aiiLn~~~~ 478 (520)
.+++.+++....
T Consensus 401 fi~y~i~k~~~g 412 (436)
T COG2252 401 FISYVILKVFTG 412 (436)
T ss_pred HHHHHHHHHHhh
Confidence 999999998554
No 10
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.95 E-value=8.2e-25 Score=227.30 Aligned_cols=315 Identities=17% Similarity=0.195 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhh
Q 010009 27 ETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIIND 106 (520)
Q Consensus 27 ~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~ 106 (520)
..+.+|+..++.-+.+.+++-+--+++.|+|++|.+.++++.++.+|++|++|+++ +|+|+++++| +.-...+ +...
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awS-tPGaAll-~~~~ 98 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWS-APGAALL-VTGF 98 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecC-chHHHHH-HHhc
Confidence 57889999999999998888888888899999999999999999999999999997 7999999999 2222222 2222
Q ss_pred ccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhccccchhhhHHH
Q 010009 107 SSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLGNCVEIGIP 186 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~~~~~i~l~ 186 (520)
.+ .+++++.|+.+++|++.+++|++|+++|++|.+|+.+.+.+++.+.+......++...+.+.++..
T Consensus 99 ~~------------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~~ 166 (395)
T TIGR00843 99 PG------------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICFS 166 (395)
T ss_pred CC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22 579999999999999999999999999999999999999999877665544344444445555433
Q ss_pred HHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCccccccccCccCcCCCCCccccCccc
Q 010009 187 MLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRTDRANLISTAPWFKFPYPL 266 (520)
Q Consensus 187 ~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~vd~~~~i~~~p~~~~P~~~ 266 (520)
.++..+ ..|| +.+++++++++++|.++++..|..+ .++ .+ .+ +..|
T Consensus 167 mll~~l----~~~r--------~~Pr~avl~aLlvG~iva~~~G~~~----------------~~~-~~-~~-l~~p--- 212 (395)
T TIGR00843 167 MLLCWL----ASKA--------FAPRYAMIAALICGIAFSFALGDMN----------------PTD-LD-FK-IALP--- 212 (395)
T ss_pred HHHHHH----HHHH--------hcchHHHHHHHHHHHHHHHHhcCCC----------------ccc-cc-cc-cccc---
Confidence 322222 2333 3578999999999999999876421 111 11 01 2223
Q ss_pred cccCCccchhHHHHH-HHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccchhh
Q 010009 267 QWGPPTFSAGHSFAM-MSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGL 345 (520)
Q Consensus 267 ~~g~p~f~~~~i~~~-~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~ 345 (520)
.|..|+||+...+.. ++.+++.+..+.-.-.++.|.++++. +.|+-+.++|++|++++.||+.+ -|.+.
T Consensus 213 ~~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~----p~~~~~~~tGl~sll~ApfGg~~------~nlaa 282 (395)
T TIGR00843 213 QFIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNA----PAKPIIAAAGLAALFAAFAGGIS------IGIAA 282 (395)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCC----CchHHHHHHHHHHHHHhccCCch------hhhhH
Confidence 456788988776654 58899999888877788888887653 46999999999999999999997 33333
Q ss_pred hhhcc---------CCcchH-HHHHHHHHHHHHhh-hHHHHHHHhCChhhhHH-HHHHHHHHHHHHH
Q 010009 346 LGLTR---------VGSRRV-VQISAGFMIFFSCL-GKFGAVFASIPIPIFAA-LYCVLFGLVASVG 400 (520)
Q Consensus 346 i~~Tg---------~~SR~~-~~~ag~~li~l~~~-Pk~~~l~~~IP~~V~gg-~li~~~g~i~~~G 400 (520)
+..+= ...||. .+.+|++.++++++ +.+..+++.+|.+.+.. +-+.+++.+..+-
T Consensus 283 itaAic~G~~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~l 349 (395)
T TIGR00843 283 ITAAICMGKDAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGNI 349 (395)
T ss_pred HhHHHhcCcccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 32221 233444 68899999999999 78999999999999888 6667778776533
No 11
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.91 E-value=1.7e-21 Score=199.22 Aligned_cols=314 Identities=19% Similarity=0.224 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhh
Q 010009 27 ETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIIND 106 (520)
Q Consensus 27 ~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~ 106 (520)
.++..|+..++.-+.+.+++-+-.+++.|++++|...++.+..+.+|+.|+..++. +|.|++.++|-- +..+.+...
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWStP--GaAlL~~~~ 82 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWSTP--GAALLATSL 82 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcchH--HHHHHHHhc
Confidence 57889999999999888888888888899999999999999999999999999996 999999999832 222222222
Q ss_pred ccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhccccchhhhHHH
Q 010009 107 SSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLGNCVEIGIP 186 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~~~~~i~l~ 186 (520)
.+ ++++++.|+.+++|++.+++|++|+++|+.|.+|+.+...+++.+-+..--..++...+++.+...
T Consensus 83 ~~------------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ 150 (378)
T PF03594_consen 83 PG------------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGP 150 (378)
T ss_pred cC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22 689999999999999999999999999999999999988888855544443444445556666655
Q ss_pred HHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCccccccccCccCcCCCCCccccCccc
Q 010009 187 MLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRTDRANLISTAPWFKFPYPL 266 (520)
Q Consensus 187 ~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~vd~~~~i~~~p~~~~P~~~ 266 (520)
.++..++. ||+ .++++++..+++|.++++..|.. +... . .-++..|
T Consensus 151 ml~~~l~~----~r~--------~pr~av~~al~~g~~~a~~~g~~----------------~~~~-~--~~~~~~p--- 196 (378)
T PF03594_consen 151 MLAVFLLA----RRF--------SPRYAVLAALVAGVAVAALTGQL----------------HPSA-L--QLSLAHP--- 196 (378)
T ss_pred HHHHHHHH----HHH--------cchhHHHHHHHHHHHHHHhcCCC----------------Cccc-c--cccccee---
Confidence 55444432 333 46889999999999998766532 1111 1 1122233
Q ss_pred cccCCccchhHHHHH-HHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccchhh
Q 010009 267 QWGPPTFSAGHSFAM-MSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGL 345 (520)
Q Consensus 267 ~~g~p~f~~~~i~~~-~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~ 345 (520)
.|-.|+||+..++.+ ++++++.+..+...-.++-|..|++ ++.|+-+...|++|++.+.||+.+ -|.+.
T Consensus 197 ~~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~----~p~~~~~~~tGl~s~l~ApfGg~~------~nlAa 266 (378)
T PF03594_consen 197 VFTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQ----PPVNPLITVTGLASLLAAPFGGHA------VNLAA 266 (378)
T ss_pred EEECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCC----CCchHHHHHHHHHHHHHhhhchhh------hHHHH
Confidence 566789999998876 5899999999999999999988764 578999999999999999999996 56665
Q ss_pred hhhccC---------CcchH-HHHHHHHHHHHHhhh-HHHHHHHhCChhhhHH-HHHHHHHHHHHH
Q 010009 346 LGLTRV---------GSRRV-VQISAGFMIFFSCLG-KFGAVFASIPIPIFAA-LYCVLFGLVASV 399 (520)
Q Consensus 346 i~~Tg~---------~SR~~-~~~ag~~li~l~~~P-k~~~l~~~IP~~V~gg-~li~~~g~i~~~ 399 (520)
+...-| ..||. .+.+|++.+++|++. .+..++...|.+.+.. +.+.+++.+..+
T Consensus 267 itaAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~~s 332 (378)
T PF03594_consen 267 ITAAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLGGS 332 (378)
T ss_pred HHHHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 544322 23666 688999999999886 7889999999998887 566677776543
No 12
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.9e-21 Score=212.40 Aligned_cols=319 Identities=18% Similarity=0.203 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHH
Q 010009 25 WAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYII 104 (520)
Q Consensus 25 ~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~ 104 (520)
++..+++|++-.+..++-...... ..|+|+ ...+.++-++.++-+++|.+--.+.||.-++......+.
T Consensus 21 l~~Dl~AGltva~valP~ama~a~----~aGv~p-------~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i 89 (554)
T COG0659 21 LRGDLLAGLTVAAVALPLAMAFAI----AAGVPP-------EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVI 89 (554)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH----HcCCCH-------HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHH
Confidence 778999999976654433333322 378997 688899999999999998777789999766555444444
Q ss_pred hhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhcccc------
Q 010009 105 NDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLG------ 178 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~------ 178 (520)
.+.. .++++.++-+.+++|++++++|++|+ +++.+++|+.|+-.++..||+.++..+++.+-
T Consensus 90 ~~~~-----------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~ 157 (554)
T COG0659 90 ASLV-----------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKV 157 (554)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 3110 16799999999999999999999998 99999999887777899999977766554311
Q ss_pred c----------------hh---hhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCC
Q 010009 179 N----------------CV---EIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKP 239 (520)
Q Consensus 179 ~----------------~~---~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~ 239 (520)
. +| .+++.++.+++ +.++.. .|..+.++++++++.+++.++....
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~----~~~~~~-------~~~P~~liaiv~~t~i~~~~~~~~~----- 221 (554)
T COG0659 158 SGFWAKVSALFTVLLTINLATLLLGLLTLAILL----FLPRLT-------PRIPSPLIALVLGTLIVWIFPLDSL----- 221 (554)
T ss_pred cchHHHHHHHHHhcccccHHHHHHHHHHHHHHH----Hccchh-------hhCCcHHHHHHHHHHHHHHhcCCch-----
Confidence 0 12 23333333333 233321 2455689999999999998864210
Q ss_pred CccccccccCccCcCCCCCccccCcc-ccccCCccchh----HHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCC
Q 010009 240 YTTQISCRTDRANLISTAPWFKFPYP-LQWGPPTFSAG----HSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLS 314 (520)
Q Consensus 240 ~~~~~~~~vd~~~~i~~~p~~~~P~~-~~~g~p~f~~~----~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~ 314 (520)
+.. +...+ +|.. .+|+.|.++++ .+...+.++++.+.|++.+..+.+++.++ +.+.|
T Consensus 222 -------~~G--~i~~~-----lp~~~~~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~n 283 (554)
T COG0659 222 -------RYG--EIPGS-----LPSGLPHFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSN 283 (554)
T ss_pred -------hcc--cCccc-----CCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCC
Confidence 011 01111 1111 13444555544 44455688999999999999999998764 46789
Q ss_pred cchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHH-HH
Q 010009 315 RGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCV-LF 393 (520)
Q Consensus 315 r~l~~dGl~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~-~~ 393 (520)
|+++++|++|+.+|+||++|.|... .+.......|.+||.+.++++++++++-+ .++.++..||.+++++++++ .+
T Consensus 284 rELiaqGiaNi~sglfgg~p~~g~~-srS~~nv~sGarT~lsgi~~a~~lll~l~--~~~~~~~~IP~a~Laavli~v~~ 360 (554)
T COG0659 284 RELIAQGIANIASGLFGGIPATGSI-SRSAINIKSGARTRLSGIIHAALLLLLLL--FLAPLVSYIPLAALAAVLILVGW 360 (554)
T ss_pred HHHHHhhHHHHHHHHhCCccccchh-HHHHHHHHhCCcChHHHHHHHHHHHHHHH--HHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999999988 55555566888999999888887766544 36779999999999998875 45
Q ss_pred HHHHHHHhHh
Q 010009 394 GLVASVGLSF 403 (520)
Q Consensus 394 g~i~~~Gi~~ 403 (520)
+++-...++.
T Consensus 361 ~l~~~~~~~~ 370 (554)
T COG0659 361 GLLDWSLLKP 370 (554)
T ss_pred HhccHHHHHH
Confidence 5555555544
No 13
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=5.3e-20 Score=184.28 Aligned_cols=315 Identities=20% Similarity=0.233 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhh
Q 010009 27 ETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIIND 106 (520)
Q Consensus 27 ~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~ 106 (520)
+++.+|++.+++-+.+..++-+--+++.|.+++|++.++.+-.+.+|+.|+.-++. +|.|++.++|--.. .+.+.+.
T Consensus 21 ~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWSTPG~--all~asl 97 (402)
T COG3135 21 QTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWSTPGA--ALLVASL 97 (402)
T ss_pred hhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecCccH--HHHHhcc
Confidence 78999999999999998888777788899999999999999999999999999997 99999999983222 2222221
Q ss_pred ccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhccccchhhhHHH
Q 010009 107 SSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLGNCVEIGIP 186 (520)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~~~~~i~l~ 186 (520)
.+ .++.++.|+.+++|.+.++.|++|.++|+++.+||.+.-.++..|=+...-.+++....++.+.+.
T Consensus 98 ~g------------~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~~p~l~lp 165 (402)
T COG3135 98 GG------------LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPTQPLLVLP 165 (402)
T ss_pred CC------------CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCCChHHHHH
Confidence 22 689999999999999999999999999999999998877777644333333344445556666655
Q ss_pred HHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCccccccccCccCcCCCCCccccCccc
Q 010009 187 MLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRTDRANLISTAPWFKFPYPL 266 (520)
Q Consensus 187 ~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~vd~~~~i~~~p~~~~P~~~ 266 (520)
.++..++ .|.+ -.+++++..+++|.+++...|... . . ...+-.+.|
T Consensus 166 mv~~~ll----~r~f--------~pr~aV~aalvvgv~va~~~G~~~---~----------~------~~~~~~~~p--- 211 (402)
T COG3135 166 MVLAYLL----ARVF--------APRYAVIAALVVGVLVAALLGDLH---T----------A------LVALEISTP--- 211 (402)
T ss_pred HHHHHHH----HHHc--------CchHHHHHHHHHHHHHHHHhCccc---c----------c------ccccccCcc---
Confidence 5444332 2333 368999999999999998876421 1 0 112223345
Q ss_pred cccCCccchhHHHHH-HHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccchhh
Q 010009 267 QWGPPTFSAGHSFAM-MSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGL 345 (520)
Q Consensus 267 ~~g~p~f~~~~i~~~-~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~ 345 (520)
.|-.|+||+.+++.+ ++++++.+..+...-.++-|.+|++ +..+.-+...|+.+++++.||+.+ -|.+.
T Consensus 212 ~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~----pp~~pl~~~TGl~sll~ApfG~~t------~nLaA 281 (402)
T COG3135 212 TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQ----PPPSPLIVATGLASLLSAPFGGHT------VNLAA 281 (402)
T ss_pred eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCC----CCCchHHHHhHHHHHHhcccccce------ecHHH
Confidence 677789999988876 5899999999999989988887764 456788999999999999999985 56666
Q ss_pred hhhccCCc---------chH-HHHHHHHHHHHHhhh-HHHHHHHhCChhhhHH-HHHHHHHHHHHHH
Q 010009 346 LGLTRVGS---------RRV-VQISAGFMIFFSCLG-KFGAVFASIPIPIFAA-LYCVLFGLVASVG 400 (520)
Q Consensus 346 i~~Tg~~S---------R~~-~~~ag~~li~l~~~P-k~~~l~~~IP~~V~gg-~li~~~g~i~~~G 400 (520)
+.+.-|.+ ||. ..++|++.+++|+|. .+.+++...|.+.+.. +.+.+.|.+..+-
T Consensus 282 ItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~~~l 348 (402)
T COG3135 282 ITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLGNSL 348 (402)
T ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 65544443 554 788999999999886 7999999999988877 5555566655433
No 14
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.84 E-value=2.7e-18 Score=189.70 Aligned_cols=324 Identities=16% Similarity=0.170 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHH
Q 010009 25 WAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYII 104 (520)
Q Consensus 25 ~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~ 104 (520)
++..+++|++-.+..++-.+....+ .|+++ ...+.++.+..++-+++|+..-++.||..+.......+.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l----aglpp-------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v 82 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL----AGLSP-------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVI 82 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----cCCCc-------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHH
Confidence 6789999999877666555555433 68987 567889999999999999888899999754443333344
Q ss_pred hhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhccc-------
Q 010009 105 NDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLL------- 177 (520)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~------- 177 (520)
..++..... + ....+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.++..+++.+
T Consensus 83 ~~~~~~~~~-~----~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~ 156 (563)
T TIGR00815 83 ARVGLQYLF-D----CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFN 156 (563)
T ss_pred HHhcCCCCc-c----cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 433311110 0 02356777889999999999999998 9999999998888899989987764433221
Q ss_pred -c----------------c---hhhhHHHHHHHHHHHHHhhhccCCCCCCcc-cchhhHHHHHHHHHHHHHHHHhhCCCC
Q 010009 178 -G----------------N---CVEIGIPMLLLVIGLSQYLKHVRPFRDLPI-FERFPVLISVTIIWIYSVILTASGAYR 236 (520)
Q Consensus 178 -~----------------~---~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~-~~~~aiLigi~vg~iva~~~g~~~~~~ 236 (520)
. . ||....+++..++++ ...|++.|..++.+ ......|+.+++++++.+.++... ++
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~-~~ 234 (563)
T TIGR00815 157 TRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFL-LYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKK-QG 234 (563)
T ss_pred CCCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHH-HHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCC-CC
Confidence 0 0 222112222211111 12333311111111 123457888888888776653210 00
Q ss_pred CCCCccccccccCccCcCCCCCccccCccccccCCccchhH----HHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCcc
Q 010009 237 GKPYTTQISCRTDRANLISTAPWFKFPYPLQWGPPTFSAGH----SFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYV 312 (520)
Q Consensus 237 ~~~~~~~~~~~vd~~~~i~~~p~~~~P~~~~~g~p~f~~~~----i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~ 312 (520)
+.. +.+.|- .+| .+..|.+|+.. +...+.+++++++|++...++.+++.++ +.+
T Consensus 235 -----------~~~---~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~----~~d 292 (563)
T TIGR00815 235 -----------VSI---LGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY----KID 292 (563)
T ss_pred -----------eEE---EeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCC
Confidence 111 111110 122 23345566544 3445689999999999999998887553 367
Q ss_pred CCcchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHH
Q 010009 313 LSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVL 392 (520)
Q Consensus 313 i~r~l~~dGl~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~ 392 (520)
.||++.++|++|+++|+||++|.+... ....+...+|.++|.+.++++++++++.++ ++.++..+|.+++++++++.
T Consensus 293 ~n~El~a~G~~N~~~~~fg~~p~~~s~-srs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ili~~ 369 (563)
T TIGR00815 293 ANQELVAQGIANIVGSFFSCYPATGSL-SRTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAIIISA 369 (563)
T ss_pred CcHHHHHhhHHHHHHHHhCccCCCCcc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHHH
Confidence 899999999999999999999999777 455666678999999998888777665544 55699999999999999863
No 15
>PRK11660 putative transporter; Provisional
Probab=99.84 E-value=2.5e-18 Score=190.07 Aligned_cols=324 Identities=16% Similarity=0.165 Sum_probs=209.9
Q ss_pred CHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHH
Q 010009 24 PWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYI 103 (520)
Q Consensus 24 ~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i 103 (520)
.++..+.+|++-.+..++-.++...+ .|+++ +..+.++.+++++-+++|+.--++.||..+.......+
T Consensus 28 ~l~~D~iAGltv~~~~iPq~mayA~l----ag~pp-------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~ 96 (568)
T PRK11660 28 RFTRDLIAGITVGIIAIPLAMALAIA----SGVPP-------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPV 96 (568)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----cCCCh-------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHH
Confidence 47899999999887766666655533 68887 45789999999999999888889999975543322222
Q ss_pred HhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhccc-c----
Q 010009 104 INDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLL-G---- 178 (520)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~-~---- 178 (520)
..+ ++++.+..+.+++|++++++|++|+ +++.+++|..|+..++..+|+.+...++++. +
T Consensus 97 ~~~--------------~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~ 161 (568)
T PRK11660 97 SQQ--------------FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMA 161 (568)
T ss_pred HHH--------------hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 222 3466677789999999999999997 8999999988888888888886655443321 0
Q ss_pred ---c----------------hh---hhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCC
Q 010009 179 ---N----------------CV---EIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYR 236 (520)
Q Consensus 179 ---~----------------~~---~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~ 236 (520)
. +| .+++.+++++++ .+++. .|....++++++++++++.++..+ .+
T Consensus 162 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~----~~~~~-------~~iP~~li~iiv~t~~~~~~~~~~-~~ 229 (568)
T PRK11660 162 HVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLIL----WPRLK-------IRLPGHLPALLAGTAVMGVLNLLG-GH 229 (568)
T ss_pred CCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH----HHhhc-------ccCchHHHHHHHHHHHHHHHhccC-CC
Confidence 0 12 234444443333 23321 134556889999999988876431 00
Q ss_pred CCCCcccccccc-CccC--cCC-CCCccccCccc-cc-cCC-ccchhH----HHHHHHHHHHHHhhhhhHHHHHHhhhcC
Q 010009 237 GKPYTTQISCRT-DRAN--LIS-TAPWFKFPYPL-QW-GPP-TFSAGH----SFAMMSAVLVSMVESTGAYKAASRLAIA 305 (520)
Q Consensus 237 ~~~~~~~~~~~v-d~~~--~i~-~~p~~~~P~~~-~~-g~p-~f~~~~----i~~~~~~~lv~~~esiG~~~av~~~~~~ 305 (520)
.+.......... |-.. .+. ..|-+.+|... .+ +.+ .+|++. +...+.+.++..+|++.+..+.++..++
T Consensus 230 v~~vg~~~~~~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~ 309 (568)
T PRK11660 230 VATIGSRFHYVLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGT 309 (568)
T ss_pred ceeecccccccccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 000000000000 0000 000 01212222100 00 000 235544 3445678889999999888887777553
Q ss_pred CCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhh
Q 010009 306 TPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIF 385 (520)
Q Consensus 306 ~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~ 385 (520)
+.+.||++.++|++|+++|+||++|++++.++ ..+...+|.++|.+.+++++++++.-+ .++.++..||.+++
T Consensus 310 ----~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~sr-Sa~n~~aGarT~la~iv~a~~~ll~ll--~l~~ll~~iP~~vL 382 (568)
T PRK11660 310 ----KHSANSELVGQGLGNIVAPFFGGITATAAIAR-SAANVRAGATSPISAVIHALLVLLALL--VLAPLLSYLPLSAM 382 (568)
T ss_pred ----CCCCcHHHHHHhHHHHHHHHhCcccccchHHH-HHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHhCcHHHH
Confidence 35789999999999999999999999998634 455566888899998777765543321 13349999999999
Q ss_pred HHHHHHH
Q 010009 386 AALYCVL 392 (520)
Q Consensus 386 gg~li~~ 392 (520)
++++++.
T Consensus 383 a~ili~~ 389 (568)
T PRK11660 383 AALLLMV 389 (568)
T ss_pred HHHHHHH
Confidence 9998863
No 16
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.48 E-value=1.7e-13 Score=138.29 Aligned_cols=238 Identities=19% Similarity=0.176 Sum_probs=151.1
Q ss_pred HhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhcccc--------c-----------------hh---hhHHHHHHHH
Q 010009 140 LGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLG--------N-----------------CV---EIGIPMLLLV 191 (520)
Q Consensus 140 lg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~--------~-----------------~~---~i~l~~l~l~ 191 (520)
+|++|+ +++.+++|..|+..++..+|+.++..+++++- + +| .++..++.++
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 367787 99999999988888999999977665543210 0 11 1122222222
Q ss_pred HHHHHhhhccCCCCCCcc-cchhhHHHHHHHHHHHHHHHHhhCCCCCCCCccccccccCc-cCcCCCCCccccCcccccc
Q 010009 192 IGLSQYLKHVRPFRDLPI-FERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRTDR-ANLISTAPWFKFPYPLQWG 269 (520)
Q Consensus 192 i~l~~~~~~~~p~~~~~~-~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~vd~-~~~i~~~p~~~~P~~~~~g 269 (520)
. +..+.++ .+++++ .+....++.+++++++++.++... . .++. .+.....|.+.+|. .
T Consensus 80 ~-~~~~~~~---~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~-~-----------~v~~~~~i~~~lp~~~~p~-~--- 139 (280)
T PF00916_consen 80 L-IIRLLPK---RLPSRFWPPIPAPLIVVVLGTLLSWLFLLDK-Y-----------GVAIVGEIPSGLPPPSLPS-F--- 139 (280)
T ss_pred h-hhhhhhh---hccccccccccccceeeehhhhhhhhhhhcc-c-----------cccccccccccCccccCcc-c---
Confidence 1 1112221 111222 334457888888888887663211 0 0111 11111233333342 0
Q ss_pred CCccch----hHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccchhh
Q 010009 270 PPTFSA----GHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGL 345 (520)
Q Consensus 270 ~p~f~~----~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~ 345 (520)
.+|+ ..+...+.++++..+|++.+.++.++..++ +.+.||++.+.|++|+++|+||++|.+... ....+
T Consensus 140 --~~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s~-srs~~ 212 (280)
T PF00916_consen 140 --DISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGSF-SRSAV 212 (280)
T ss_pred --ccccccccccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhccccccccc-ccchH
Confidence 3333 334456788999999999988888776543 458899999999999999999999998887 55566
Q ss_pred hhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHH-HHHHHHHHHhHhhhhc
Q 010009 346 LGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCV-LFGLVASVGLSFLQFT 407 (520)
Q Consensus 346 i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~-~~g~i~~~Gi~~l~~v 407 (520)
....|.+||.+.++++++++++-+ .+..++..+|.+++++++++ .+.++....++.+.|.
T Consensus 213 ~~~~Ga~t~~s~~~~~~~~l~~l~--~~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~ 273 (280)
T PF00916_consen 213 NYRAGARTRLSGLISALFVLLVLL--FLAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRV 273 (280)
T ss_pred HHhcCcceeehhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC
Confidence 667899999998888777655433 24469999999999998886 4555555555554443
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.40 E-value=4.8e-11 Score=133.74 Aligned_cols=312 Identities=19% Similarity=0.206 Sum_probs=194.1
Q ss_pred HhHHHHHHHHh--cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHH-HHhhccccccCcchhhH
Q 010009 43 SVMIPTLLVHA--MGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAY-IINDSSLQRITDDHERF 119 (520)
Q Consensus 43 ~i~~P~il~~a--~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~-i~~~~~~~~~~~~~~~~ 119 (520)
++.+|--++-+ +|+++ .-.+.++-++.++-.+||+--++..||-. .+..+.. +..+.- .... +....
T Consensus 92 ~l~VPQ~iaYa~la~lpp-------iyGLYssf~~~~iY~~fGtsr~isiG~~a-v~sLmv~~~v~~~v-~~~~-~~~~~ 161 (665)
T KOG0236|consen 92 SLSVPQGLAYALLAGLPP-------IYGLYSSFFPPLIYAIFGTSRHVSIGPFA-VVSLMVGTVVSQVV-LSEA-PSNDI 161 (665)
T ss_pred eeecchHHHHHHHcCCCh-------HHHHHHHHHHHHHheeccCCCcccccHHH-HHHHHHHHHHHHHH-hccC-CCcCc
Confidence 34445444332 67776 67888999999999999999999988842 1211111 010000 0000 00001
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhcc------ccc--------------
Q 010009 120 IQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPL------LGN-------------- 179 (520)
Q Consensus 120 ~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~------~~~-------------- 179 (520)
...++.+....+++|++|+++|++|+ |.+.+++|..++-.+....++.+...+++. ...
T Consensus 162 ~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~ 240 (665)
T KOG0236|consen 162 ATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDL 240 (665)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHh
Confidence 15688889999999999999999998 999999997665556666666554433322 110
Q ss_pred ---------hhhhHHHHHHHHHHHHH-hhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCccccccccC
Q 010009 180 ---------CVEIGIPMLLLVIGLSQ-YLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRTD 249 (520)
Q Consensus 180 ---------~~~i~l~~l~l~i~l~~-~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~vd 249 (520)
++.+++..+.+++ +.+ +.++. +++-++.....-++.+++++++++.+...+.+.. ..++
T Consensus 241 ~~~~~~~~~~~~~~l~~l~~L~-~~k~~~~~~--~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~~ 309 (665)
T KOG0236|consen 241 LANLPKTLATLVLSLIFLVVLL-LTKELNPKF--KKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIVG 309 (665)
T ss_pred hhcccccchhhhhHHHHHHHHH-HHHHhhhhh--cccceeecccHHHHHHHHHHHHHHHhccccccCC--------eeec
Confidence 1223333322222 222 12211 1111112344589999999999988764321000 0111
Q ss_pred ccCcCCCCCccccCccccccCCccc--hhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHh
Q 010009 250 RANLISTAPWFKFPYPLQWGPPTFS--AGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLD 327 (520)
Q Consensus 250 ~~~~i~~~p~~~~P~~~~~g~p~f~--~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~sila 327 (520)
+ + .+++ | +...|.++ ...+...+.+.++++.|+++-.++.++..++ .-+-||+++|-|++|+++
T Consensus 310 --~-i--~~g~--~---~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y----~vd~nqELiAlG~~Ni~s 375 (665)
T KOG0236|consen 310 --E-I--PRGF--P---PPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGY----KVDSNQELIALGISNILS 375 (665)
T ss_pred --c-C--CCCC--C---CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----eeCCChHHHHHHHHHHhh
Confidence 0 1 1112 2 11223332 3446667889999999998877777766543 357799999999999999
Q ss_pred hhcCCCCCccccccchhhhhhccCCcchHHHHHHHH-HHHHHhhhHHHHHHHhCChhhhHHHHHH-HHH
Q 010009 328 GLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGF-MIFFSCLGKFGAVFASIPIPIFAALYCV-LFG 394 (520)
Q Consensus 328 glfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~-li~l~~~Pk~~~l~~~IP~~V~gg~li~-~~g 394 (520)
++|++.|+|... .+..+-..+|+.++.+.++.++. ++.+- .++.++..+|.++++++.+. +.+
T Consensus 376 Sff~~~p~tgs~-sRSav~~~sG~~T~~s~i~~~~~vl~~l~---~l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 376 SFFGCYPTTGSF-SRSAVNIKSGGRTQVAGIVSAALVLLALL---FLGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred hhhceEcccchh-hHHHHHhhcCCcchHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhH
Confidence 999999998887 77788888999999886555544 33333 34569999999999998775 444
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.65 E-value=4.6e-05 Score=87.29 Aligned_cols=318 Identities=15% Similarity=0.153 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceEEech---hhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHH
Q 010009 64 VIQTLLFVSGINTLLQALFGTRLPAVVGGS---FAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIIL 140 (520)
Q Consensus 64 li~at~l~sGi~Tllq~~~G~rlPiv~gps---fa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~ill 140 (520)
=++=++++++++.++.++++..--.+.|.+ -.|.-.++..+..++.. -++--.=..++++++.+++
T Consensus 402 gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~~-----------yl~~~~WigiW~~~~~~ll 470 (900)
T TIGR00834 402 GVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGLE-----------YLVGRVWIGLWLVLLVLLL 470 (900)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCCc-----------hHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999965555566665 33343444455433210 1122222356788888889
Q ss_pred hhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhcccc------------------------------------------
Q 010009 141 GYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLLG------------------------------------------ 178 (520)
Q Consensus 141 g~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~~------------------------------------------ 178 (520)
+.+.. ..+.|+++.-.-=.+-++|++..+..+++.+.
T Consensus 471 a~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (900)
T TIGR00834 471 VATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTL 549 (900)
T ss_pred HHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccccc
Confidence 88887 77888888765555555666544433321100
Q ss_pred ---ch---hhhHHHHH---HHHHHHHHhhhccC-----CCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCcccc
Q 010009 179 ---NC---VEIGIPML---LLVIGLSQYLKHVR-----PFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQI 244 (520)
Q Consensus 179 ---~~---~~i~l~~l---~l~i~l~~~~~~~~-----p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~ 244 (520)
.+ ...++..+ +.++.++.+++++. |.+-++++.-+++.|++++.+.+.+.++-.. .+.- +
T Consensus 550 ~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~-~~kl-~---- 623 (900)
T TIGR00834 550 GGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTY-TQKL-S---- 623 (900)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCc-cccc-C----
Confidence 00 12223322 22344455566543 1223444555789999999998888664211 0000 0
Q ss_pred cccc-CccCc-CCCCCccccCccccccCCccc-hhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhh
Q 010009 245 SCRT-DRANL-ISTAPWFKFPYPLQWGPPTFS-AGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQG 321 (520)
Q Consensus 245 ~~~v-d~~~~-i~~~p~~~~P~~~~~g~p~f~-~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dG 321 (520)
+. .|..- -....|+--|.......|.+. +.++++.+.+++.-++|+-=+..-+++. ..+-++....+=.++.-|
T Consensus 624 --Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~-e~kLkKgsgyH~Dllllg 700 (900)
T TIGR00834 624 --VPSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK-ERKLKKGSGFHLDLLLVV 700 (900)
T ss_pred --CCCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc-cccCCCCcccchHHHHHH
Confidence 00 01100 011356532210000112222 4566677788888888875443333332 112234445667899999
Q ss_pred hHHHHhhhcCCCCCccccccchhhhh----------------hccCCc-chHHHHHHHHH-HHHHhhhHHHHHHHhCChh
Q 010009 322 IGILLDGLFGTGTGSTVSVENVGLLG----------------LTRVGS-RRVVQISAGFM-IFFSCLGKFGAVFASIPIP 383 (520)
Q Consensus 322 l~silaglfG~~p~tt~s~en~g~i~----------------~Tg~~S-R~~~~~ag~~l-i~l~~~Pk~~~l~~~IP~~ 383 (520)
+-+.++|++|-...++..-++.--+. ..+|.. |...+..+++. +.+.+.| ++..||.+
T Consensus 701 ~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv~~~P----vL~~IP~a 776 (900)
T TIGR00834 701 GMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSILMEP----ILKRIPLA 776 (900)
T ss_pred HHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHHHHHH----HHhhccHH
Confidence 99999999997755543212221111 112322 55555544422 2233334 99999999
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhhc
Q 010009 384 IFAALYCVLFGLVASVGLSFLQFT 407 (520)
Q Consensus 384 V~gg~li~~~g~i~~~Gi~~l~~v 407 (520)
|+.|+.+++ |.-...|.|...++
T Consensus 777 VL~GvFlYM-Gv~SL~GnQ~~~Ri 799 (900)
T TIGR00834 777 VLFGIFLYM-GVTSLSGIQLFDRL 799 (900)
T ss_pred HHHHHHHHH-HHhhcccCHHHHHH
Confidence 999999986 77777777776544
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=98.46 E-value=7.2e-05 Score=84.05 Aligned_cols=345 Identities=12% Similarity=0.116 Sum_probs=187.1
Q ss_pred HHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEech---hhhHHHHHHHHhhcccc
Q 010009 34 QNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGS---FAYVIPIAYIINDSSLQ 110 (520)
Q Consensus 34 Q~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gps---fa~~~~~~~i~~~~~~~ 110 (520)
...+.++.+++.+.+-.+.-++-.. +-..-++=+++++.++.++.+++|..-..++|++ -.|.-+.+..+...+..
T Consensus 364 a~~lfiYfa~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~d 442 (876)
T KOG1172|consen 364 AATLFIYFACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGLD 442 (876)
T ss_pred hHHHHHHHHhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCCc
Confidence 4455555555444444443222211 2234467789999999999999977776777775 23333445555543311
Q ss_pred ccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHhHHhhhc---------------
Q 010009 111 RITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFP--------------- 175 (520)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~--------------- 175 (520)
-++--.=..+++.++.++++.+.. ..+.++|+...-=.+-++|.+..+..+++
T Consensus 443 -----------yl~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~ 510 (876)
T KOG1172|consen 443 -----------YLAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDS 510 (876)
T ss_pred -----------hhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 122222336778888888888886 78888888754333444444434333332
Q ss_pred ----------ccc--------------chhhhHHHHHHHHHHHHHhhhccC-----CCCCCcccchhhHHHHHHHHHHHH
Q 010009 176 ----------LLG--------------NCVEIGIPMLLLVIGLSQYLKHVR-----PFRDLPIFERFPVLISVTIIWIYS 226 (520)
Q Consensus 176 ----------~~~--------------~~~~i~l~~l~l~i~l~~~~~~~~-----p~~~~~~~~~~aiLigi~vg~iva 226 (520)
... ++..++++..+.++.++.++|++. |.+.+.+..-+++.+++++-..+.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~ 590 (876)
T KOG1172|consen 511 KPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLID 590 (876)
T ss_pred cCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHH
Confidence 000 011233333333445566777663 112233445578999999988888
Q ss_pred HHHHhhCCCCCCCCccccccccCccCcCCC-CCccccCccccccCCccc-hhHHHHHHHHHHHHHhhhhhHHHHHHhhhc
Q 010009 227 VILTASGAYRGKPYTTQISCRTDRANLIST-APWFKFPYPLQWGPPTFS-AGHSFAMMSAVLVSMVESTGAYKAASRLAI 304 (520)
Q Consensus 227 ~~~g~~~~~~~~~~~~~~~~~vd~~~~i~~-~p~~~~P~~~~~g~p~f~-~~~i~~~~~~~lv~~~esiG~~~av~~~~~ 304 (520)
+..+.. .+..-+ -+..++..-+. ..|+-.|. . ..|.+. ..++++.+.+++.-++|+-=+..-+++. +
T Consensus 591 ~~~~~~--~~~kl~-----vp~~~~~t~~~~rgw~v~~~-~--~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk-e 659 (876)
T KOG1172|consen 591 YFGGSV--ETPKLP-----VPSVFPPTWPFDRGWFVPPF-G--KNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK-E 659 (876)
T ss_pred hhcccc--CCCccc-----cCcCCCCCCcccCCeeeCCC-C--CCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-c
Confidence 766521 111000 00001100011 24554331 0 122222 3455566677788888874332222222 1
Q ss_pred CCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccchhhhhhc----------------cCCc-chHHHHHHHHHHHH
Q 010009 305 ATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLT----------------RVGS-RRVVQISAGFMIFF 367 (520)
Q Consensus 305 ~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~i~~T----------------g~~S-R~~~~~ag~~li~l 367 (520)
.+-++....+=.++.-|+-+.++|++|=...++...++..-+..= +|.. |......+++..
T Consensus 660 ~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvg-- 737 (876)
T KOG1172|consen 660 NKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVG-- 737 (876)
T ss_pred ccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHH--
Confidence 122344456668999999999999999877666443554333211 1222 333444444332
Q ss_pred HhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhhh
Q 010009 368 SCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQF 406 (520)
Q Consensus 368 ~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~~ 406 (520)
+.-.+..++..||.+|+.|+.++| |.=...|.|...+
T Consensus 738 -ls~~~~pvL~~IP~~VL~GvFlYM-gv~SL~Gnqf~eR 774 (876)
T KOG1172|consen 738 -LSVLLLPVLKLIPMPVLYGVFLYM-GVSSLPGNQFFER 774 (876)
T ss_pred -HHHHHHHHHhhccHHHHHHHHHHH-hhccCCccHHHHH
Confidence 222345589999999999999985 5555666665543
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.70 E-value=0.013 Score=60.57 Aligned_cols=349 Identities=13% Similarity=0.116 Sum_probs=183.3
Q ss_pred cCcccccCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 010009 13 QDLEYCIDSNPPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGD------KARVIQTLLFVSGINTLLQALFGTRL 86 (520)
Q Consensus 13 ~~~~~~~~e~~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~------~~~li~at~l~sGi~Tllq~~~G~rl 86 (520)
+|-.|+.||-.|.. +|.---.+|+++.+ ..-++..|++++- ...++.+.+|+.-+++++.- .+|+
T Consensus 53 rD~rfE~ED~vPAl----AgtIGkivMvsAv~---aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~anL 123 (492)
T PF11840_consen 53 RDYRFEWEDLVPAL----AGTIGKIVMVSAVA---AAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RANL 123 (492)
T ss_pred cccccchHHhhHHH----HhhhhHHHHHHHHH---HHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--cccc
Confidence 45566777765532 33333344543322 1223336777642 23445555455544444433 4667
Q ss_pred ceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHH
Q 010009 87 PAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVVGLVG 166 (520)
Q Consensus 87 Piv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v~lIG 166 (520)
+=-.||---.++. +++. | +-+.++| ++-|++-++++.+|--.|+.+.-..-|.|..+..+|
T Consensus 124 AGthgPmIpLIp~---ivaa-G-------------gHPLalg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG 184 (492)
T PF11840_consen 124 AGTHGPMIPLIPL---IVAA-G-------------GHPLALG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLG 184 (492)
T ss_pred cCCCCCcchhhHH---HHHc-C-------------CCcHHHH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeeh
Confidence 6666775444443 2222 1 2344554 456888999999988889999999988887777667
Q ss_pred HHhHHhhhcc----cc--chhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 010009 167 LGLFQRGFPL----LG--NCVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPY 240 (520)
Q Consensus 167 l~l~~~~~~~----~~--~~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~ 240 (520)
+.=..-+++. .. +...++.+.+++.+++-.|+.++ +|| -.++-++-+++-++++.+|.- ++.+.+
T Consensus 185 ~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~----~Kr---WLaIPl~~~~a~~~a~~lGa~--f~f~t~ 255 (492)
T PF11840_consen 185 FVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKI----EKR---WLAIPLCSILAGVLAFALGAP--FEFTTE 255 (492)
T ss_pred hhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHh----ccc---hhhhhHHHHHHHHHHHHcCCC--ceeecC
Confidence 6322222222 11 23356666666666665556544 233 345666666666677777641 111000
Q ss_pred ccccccccCccCcCCCCCccccCccccccCCccc-hhHHHHHHHHH-HHHHhhhhhHHHHHHhhhcCCC--CCCccCCcc
Q 010009 241 TTQISCRTDRANLISTAPWFKFPYPLQWGPPTFS-AGHSFAMMSAV-LVSMVESTGAYKAASRLAIATP--PPAYVLSRG 316 (520)
Q Consensus 241 ~~~~~~~vd~~~~i~~~p~~~~P~~~~~g~p~f~-~~~i~~~~~~~-lv~~~esiG~~~av~~~~~~~~--~~~~~i~r~ 316 (520)
....++ ...=|..=-.-++.|+|.++ +-+.+++..++ ..=.-|.+|+ +..++.+-.++ +..-+++..
T Consensus 256 ----pglp~l----nP~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMWSpDflgh-rvFqelnypk~~~kvlMnvDDT 326 (492)
T PF11840_consen 256 ----PGLPNL----NPMYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMWSPDFLGH-RVFQELNYPKETKKVLMNVDDT 326 (492)
T ss_pred ----CCCCCC----CCcccccCCcccccCCCcHHHHHHhccHHHHHHHHhCchHHHH-HHHHHhcCchhhcceeecccch
Confidence 000001 11112221223456777654 22222332222 1223455665 33455432211 222478899
Q ss_pred hhhhhhHHHHhhhcCCCCCccccccchhhh-hhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHH-HHH
Q 010009 317 IGWQGIGILLDGLFGTGTGSTVSVENVGLL-GLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCV-LFG 394 (520)
Q Consensus 317 l~~dGl~silaglfG~~p~tt~s~en~g~i-~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~-~~g 394 (520)
+...++=+++++.+|+-..++.- ..--+- +..|+-=+--.+..++++++.+...- ..=++.= .||+--++++ +|=
T Consensus 327 m~~~siRQ~vGs~lGGgN~~SsW-gTymIPaaIaKRPIpggAiLtg~~Ci~~av~Gy-PMdlavw-~Pvl~vALlvGVfl 403 (492)
T PF11840_consen 327 MTMCSIRQIVGSILGGGNIASSW-GTYMIPAAIAKRPIPGGAILTGLLCIVAAVWGY-PMDLAVW-PPVLRVALLVGVFL 403 (492)
T ss_pred hHHHHHHHHHhhcccCCcccccc-hhhhhhHHHhcCCCCchHHHHHHHHHHHHHhcC-cchhhhc-ccHHHHHHHHHHHH
Confidence 99999999999999987544332 111111 22343334446778888888776540 0012222 4677777765 565
Q ss_pred HHHHHHhHhhhhcccc
Q 010009 395 LVASVGLSFLQFTNMN 410 (520)
Q Consensus 395 ~i~~~Gi~~l~~v~~~ 410 (520)
-+.-+|+|+.++-+-+
T Consensus 404 PLleAGmqm~r~~k~s 419 (492)
T PF11840_consen 404 PLLEAGMQMTRKGKTS 419 (492)
T ss_pred HHHHHHHHHHhcCCcc
Confidence 6677899888764443
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=97.20 E-value=0.00025 Score=77.23 Aligned_cols=200 Identities=14% Similarity=0.130 Sum_probs=1.8
Q ss_pred HHHHHHhhhccC-----CCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccc-CccCcCC-CCCccccC
Q 010009 191 VIGLSQYLKHVR-----PFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGKPYTTQISCRT-DRANLIS-TAPWFKFP 263 (520)
Q Consensus 191 ~i~l~~~~~~~~-----p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~~~~~~~~~~~v-d~~~~i~-~~p~~~~P 263 (520)
++.+..++|++. +.+-++++.-+++.|++++-+.+...++. . .+.- .+. ++....+ ...|+--|
T Consensus 256 Tf~la~~L~~fk~S~yf~~~vR~~isDf~v~iaI~~~~~~~~~~~~-~-~~kL-------~vp~~f~pt~~~~r~W~v~p 326 (510)
T PF00955_consen 256 TFWLAYTLRQFKNSPYFPRWVREIISDFGVPIAILIMTLVDYLFGV-D-TPKL-------NVPSSFKPTSPGKRGWFVNP 326 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCcCccHHHHHhHHhhHHHHHHHHHHHHHHHhcc-c-cccc-------CCCCCCCCCCCCCCCeecCc
Confidence 334445555543 12234455667899999998888766552 1 0100 000 1211001 13465433
Q ss_pred ccccccCCccc-hhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccc
Q 010009 264 YPLQWGPPTFS-AGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVEN 342 (520)
Q Consensus 264 ~~~~~g~p~f~-~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en 342 (520)
. ...|.+. ..++++.+.+++.-++|+-=+..-+++. +.+-++....+=.+..-|+-+.+.|++|-...++...++
T Consensus 327 ~---~~~p~w~~~aA~~palll~iL~F~DqnIts~ivn~~-e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S 402 (510)
T PF00955_consen 327 F---GSLPWWAIFAAIIPALLLTILFFMDQNITSLIVNRP-ENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQS 402 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c---cCCCHHHHHHHHHHHHHHHHHHHHHHhHhHHHhCCh-hhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCC
Confidence 1 1123332 3445556667777778864332222221 112233445666889999999999999966555432122
Q ss_pred hhhhh----------------hccCCc-chHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhh
Q 010009 343 VGLLG----------------LTRVGS-RRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQ 405 (520)
Q Consensus 343 ~g~i~----------------~Tg~~S-R~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~ 405 (520)
.--+. ..+++. |.......+ ++|+...+..++..||.||+.|+.+++ |.-...|.|..+
T Consensus 403 ~~Hv~sL~~~~~~~~pGe~~~i~~V~EqRvT~l~~~~---Ligls~~l~pvL~~IP~~VL~GvFlym-G~~sL~gnq~~~ 478 (510)
T PF00955_consen 403 PMHVRSLAVESETSAPGEKPKIVGVREQRVTGLLVHL---LIGLSLFLLPVLKLIPMPVLYGVFLYM-GVTSLSGNQFFE 478 (510)
T ss_dssp ------------------------------------------------------------------------------TT
T ss_pred HHHhCcccEEeccccCCCCCeeCeEEEecccHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHhh-eeeeecCccHHH
Confidence 21111 112222 444444433 223333455689999999999999985 665666666554
Q ss_pred hc
Q 010009 406 FT 407 (520)
Q Consensus 406 ~v 407 (520)
++
T Consensus 479 Ri 480 (510)
T PF00955_consen 479 RI 480 (510)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 22
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=81.88 E-value=21 Score=39.94 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccch-hhh-----hhccC
Q 010009 278 SFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENV-GLL-----GLTRV 351 (520)
Q Consensus 278 i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~-g~i-----~~Tg~ 351 (520)
++.-+.++++.+-++++ .+..++.++ .-|+.+.-+..++.++||+++......+++ +.+ +.-+.
T Consensus 18 i~aGltv~~~~iP~~~a----yA~laglpp------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 18 LMAGLTVGILLIPQAMA----YAILAGLSP------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHcCCCc------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 34455666666666654 344555432 347999999999999999998777653332 111 11111
Q ss_pred Ccc----------hHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhh
Q 010009 352 GSR----------RVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQ 405 (520)
Q Consensus 352 ~SR----------~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~ 405 (520)
... ...+.+|++++++|++ +++.+...+|.+|+.|.+.-+--.++.+-++.+.
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~ 150 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLL 150 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 4567888999999976 7999999999999999777654445544455443
No 23
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=80.66 E-value=70 Score=34.22 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhh-
Q 010009 65 IQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYS- 143 (520)
Q Consensus 65 i~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~- 143 (520)
+...+.++|++|++-+.|| ..++..+. ++ .+++. +.+.+.++. .=.++.+.+|++++++|++
T Consensus 256 ~~~~~~~tGl~sll~ApfG-g~~~nlaa----it--aAic~--G~~ah~d~~--------rR~~a~i~~Gv~yll~glfa 318 (395)
T TIGR00843 256 AKPIIAAAGLAALFAAFAG-GISIGIAA----IT--AAICM--GKDAHEDKD--------KRWIAAAAAGIFYLLAGLFA 318 (395)
T ss_pred chHHHHHHHHHHHHHhccC-CchhhhhH----Hh--HHHhc--CcccccCcC--------ccchHHHHHHHHHHHHHHHH
Confidence 3677889999999999995 44432221 21 22332 212222222 2235678999999999988
Q ss_pred hhHHHHhhhcCccchHHHHHHHHHHhHHhhhccc------cchhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHH
Q 010009 144 QVWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLL------GNCVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLI 217 (520)
Q Consensus 144 g~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~------~~~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLi 217 (520)
+....+...+|+..+... -|+-+...-.+++ .++-+-++++++++ ..+ ..++...+-+.
T Consensus 319 g~i~~l~~~~P~~li~~l---aGlAll~~~~~~l~~a~~~~~~r~~a~~tflvt------aSg------~~~~gigaafW 383 (395)
T TIGR00843 319 GAITALFAALPKELIAAL---AGLALLGAIAGNIKIALHEDQERDAALIAFLAT------ASG------LHFLGIGSAFW 383 (395)
T ss_pred HHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH------Hhc------CCcccccHHHH
Confidence 777888999999876642 3443333221111 12233444554433 222 23467889999
Q ss_pred HHHHHHHHHH
Q 010009 218 SVTIIWIYSV 227 (520)
Q Consensus 218 gi~vg~iva~ 227 (520)
|+++|.+..+
T Consensus 384 gl~~G~~~~~ 393 (395)
T TIGR00843 384 GLCAGGLAYF 393 (395)
T ss_pred HHHHHHHHHH
Confidence 9999976654
No 24
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=71.94 E-value=25 Score=39.38 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccch-hhhhhccCC---c
Q 010009 278 SFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENV-GLLGLTRVG---S 353 (520)
Q Consensus 278 i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~-g~i~~Tg~~---S 353 (520)
++.-+.+.++.+=|+++- +..+|-+ -..|+.+.=++.++.++||+++......+.. .++...-++ .
T Consensus 25 l~AGltva~valP~ama~----a~~aGv~------p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~ 94 (554)
T COG0659 25 LLAGLTVAAVALPLAMAF----AIAAGVP------PEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVE 94 (554)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHcCCC------HHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHH
Confidence 444556666666676653 3345532 2579999999999999999998764431111 122222222 1
Q ss_pred ------chHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhhhccc
Q 010009 354 ------RRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQFTNM 409 (520)
Q Consensus 354 ------R~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~~v~~ 409 (520)
-.+...+|++.+++|++ |++.++..||.+|+-|.+--+--.++...+..+...+.
T Consensus 95 ~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 95 TGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 23457788999999876 89999999999999997765434445555555544444
No 25
>PRK11660 putative transporter; Provisional
Probab=68.94 E-value=46 Score=37.31 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccchh-hhhh-----ccC
Q 010009 278 SFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVG-LLGL-----TRV 351 (520)
Q Consensus 278 i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g-~i~~-----Tg~ 351 (520)
++.-+.+.++.+-++++ .+..+|.+. .-|+.+.-++.++.++||+++......++.. .+.. -+.
T Consensus 33 ~iAGltv~~~~iPq~ma----yA~lag~pp------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~~~~ 102 (568)
T PRK11660 33 LIAGITVGIIAIPLAMA----LAIASGVPP------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL 102 (568)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHcCCCh------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHHhhH
Confidence 44556667777777665 345566432 2279999999999999999988776533321 1111 111
Q ss_pred C-cchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhH
Q 010009 352 G-SRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLS 402 (520)
Q Consensus 352 ~-SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~ 402 (520)
. .-.+...+|++.+++|++ +++.+...||.||+.|.+.-+--.+....++
T Consensus 103 ~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~ 153 (568)
T PRK11660 103 AGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQIK 153 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112366788899999987 5889999999999999776442233343333
No 26
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=68.46 E-value=13 Score=30.75 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhh
Q 010009 24 PWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFA 95 (520)
Q Consensus 24 ~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa 95 (520)
.+++.+++|++-.+..++-.+....+ +|+++ ...+.++.++.++-++||.+.-++.||+.+
T Consensus 15 ~~~~D~~aGltva~~~iPq~~a~A~l----Ag~pp-------~~GLy~a~~~~liyalfG~s~~~~~Gp~a~ 75 (84)
T PF13792_consen 15 NLRGDLLAGLTVALVAIPQGMAYALL----AGVPP-------IYGLYAAIIPPLIYALFGSSRHMIVGPTAA 75 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCC-------CeeeHHHHHHHHHHhhccCCCccccChHHH
Confidence 56899999999877665555554433 78887 677888999999999999998899999754
No 27
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=63.34 E-value=2.1e+02 Score=30.45 Aligned_cols=141 Identities=20% Similarity=0.233 Sum_probs=77.7
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHH
Q 010009 50 LVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGA 129 (520)
Q Consensus 50 l~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga 129 (520)
+-++.|-++. +...+..+|+++++.+.||. .++. .-+...++|.. -+.++|++.+|. +
T Consensus 230 VL~a~GY~~p-----~~~~~~~tGl~s~l~ApfGg-~~~n------lAaitaAIc~g--~eah~dp~rRy~--------A 287 (378)
T PF03594_consen 230 VLRAAGYQPP-----VNPLITVTGLASLLAAPFGG-HAVN------LAAITAAICAG--PEAHPDPSRRYI--------A 287 (378)
T ss_pred HHHHcCCCCC-----chHHHHHHHHHHHHHhhhch-hhhH------HHHHHHHHHcC--CccCCCcccchH--------H
Confidence 3344565543 35667889999999999852 2221 11222334432 223344444433 3
Q ss_pred HHHHHHHHHHHhhhh-hHHHHhhhcCccchHHHHHHHHHHhHHhhhccc----c--chhhhHHHHHHHHHHHHHhhhccC
Q 010009 130 LIVASSIQIILGYSQ-VWGLFSRFFSPLGIAPVVGLVGLGLFQRGFPLL----G--NCVEIGIPMLLLVIGLSQYLKHVR 202 (520)
Q Consensus 130 ~~vaGli~illg~~g-~~~~l~~~~Pp~V~G~~v~lIGl~l~~~~~~~~----~--~~~~i~l~~l~l~i~l~~~~~~~~ 202 (520)
-+.+|++++++|++. ..-.+...+|+..+.. +-|+.+...-.+++ . ....=+++++++. ..+
T Consensus 288 av~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~---lAGLALlg~l~~sl~~A~~~~~~r~aAlvtFlvt------aSG-- 356 (378)
T PF03594_consen 288 AVAAGVFYLLFGLFAAALVALFAALPPALIAA---LAGLALLGTLGGSLQTAFSDEKYREAALVTFLVT------ASG-- 356 (378)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH------HcC--
Confidence 568999999999763 2345567778876553 33444433222211 1 1223344444332 223
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHH
Q 010009 203 PFRDLPIFERFPVLISVTIIWIYSV 227 (520)
Q Consensus 203 p~~~~~~~~~~aiLigi~vg~iva~ 227 (520)
-.++...+-+.|+++|.++..
T Consensus 357 ----isl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 357 ----ISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred ----CCcccccHHHHHHHHHHHHHh
Confidence 234678899999999988753
No 28
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=53.61 E-value=1.2e+02 Score=32.43 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 010009 65 IQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQ 144 (520)
Q Consensus 65 i~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g 144 (520)
++..+++-|++|++-+++| ..|.. + |.. -..+...-+. . ..+ +...+|++.++++++.
T Consensus 271 ~~r~l~adGl~~i~aglfG-~~p~t---~--~se-n~g~~~~T~~------~----sr~-----~~~~~a~~~i~~~l~p 328 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFG-GFPNT---T--FAQ-NIGVIALTRV------A----SRW-----VIVGAAVILIALGFFP 328 (415)
T ss_pred ccchHHHhhHHHHHHHhcC-CCCCc---c--hhh-hheeeeecCC------C----chH-----HHHHHHHHHHHHHHHH
Confidence 5789999999999999997 47752 1 110 0111111110 0 111 4677888899999887
Q ss_pred hHHHHhhhcCccchHHHH
Q 010009 145 VWGLFSRFFSPLGIAPVV 162 (520)
Q Consensus 145 ~~~~l~~~~Pp~V~G~~v 162 (520)
-...+...+|..|.|...
T Consensus 329 k~~~l~~~iP~~vlgg~~ 346 (415)
T TIGR00801 329 KIAALITSIPSPVLGGAS 346 (415)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 679999999988777653
No 29
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=50.55 E-value=85 Score=34.02 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhh
Q 010009 64 VIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYS 143 (520)
Q Consensus 64 li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~ 143 (520)
-+..++.+-|++|++-+++| ..|...=+.+.-+ .... +.. ..+ .+..+|++.+++|++
T Consensus 276 ~l~rgi~~dGi~s~laglfg-~~p~tt~sqNvGv---i~~T---gV~----------SR~-----v~~~aa~ilillgl~ 333 (433)
T PRK11412 276 RYRRSFVATGFMTLITVPLA-VIPFSPFVSSIGL---LTQT---GDY----------RRR-----SFIYGSVMCLLVALI 333 (433)
T ss_pred ccccchhhccHHHHHHHhcC-CCCCCchhhhhhh---hhhc---CCc----------hhH-----HHHHHHHHHHHHHHH
Confidence 46789999999999999996 5665211112222 1111 110 112 256788899999999
Q ss_pred hhHHHHhhhcCccchHHHH
Q 010009 144 QVWGLFSRFFSPLGIAPVV 162 (520)
Q Consensus 144 g~~~~l~~~~Pp~V~G~~v 162 (520)
+-+..+...+|..|.|.+.
T Consensus 334 PK~~alia~IP~pVlGg~~ 352 (433)
T PRK11412 334 PALTRLFCSIPLPVSSAVM 352 (433)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 8889999999988877663
No 30
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=45.95 E-value=4e+02 Score=28.35 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 010009 65 IQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQ 144 (520)
Q Consensus 65 i~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g 144 (520)
++..+.+.|+++++-+++| ..|.. ++ ..- ..+....+.. ..+ ...++|++.+++++++
T Consensus 255 ~~~~l~~~Gi~~i~aglfG-~~p~t---~~--~~~-~~~~~~tg~~----------sr~-----~~~~~~~~lil~~l~~ 312 (406)
T TIGR03173 255 LAGGLRADGLGSALGGLFN-TFPYT---SF--SQN-VGLVQLTGVK----------SRY-----VVAAAGVILVLLGLFP 312 (406)
T ss_pred ccchHHhccHHHHHHHHhC-CCCCc---ch--hhh-HHHHHHhCCC----------chH-----hHHHHHHHHHHHHHHH
Confidence 5788999999999999997 57752 21 110 0111111100 112 2367888888888877
Q ss_pred hHHHHhhhcCccchHHH
Q 010009 145 VWGLFSRFFSPLGIAPV 161 (520)
Q Consensus 145 ~~~~l~~~~Pp~V~G~~ 161 (520)
....+...+|..|.|.+
T Consensus 313 ~~~~l~~~iP~~vlgg~ 329 (406)
T TIGR03173 313 KLAALVASIPQPVLGGA 329 (406)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 67999999998887764
No 31
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=44.65 E-value=95 Score=31.36 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=32.6
Q ss_pred hhHHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhhhcccc
Q 010009 370 LGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQFTNMN 410 (520)
Q Consensus 370 ~Pk~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~~v~~~ 410 (520)
.+.+.+++..+|.-++.|.-+. -|++=..|+-++-+.-++
T Consensus 163 ~~~v~~il~~iP~~v~~Gl~va-ggmLPAvGfAmLl~~m~~ 202 (265)
T TIGR00822 163 QSAVQAMLKAIPEVVTHGLQIA-GGIIVVVGYAMVLRMMFK 202 (265)
T ss_pred HHHHHHHHHHCHHHHHHHHHHH-HhhHHHHHHHHHHHHHhh
Confidence 3567899999999999998876 488888899888777665
No 32
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=41.82 E-value=3.7e+02 Score=28.42 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=54.2
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHH
Q 010009 49 LLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQG 128 (520)
Q Consensus 49 il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 128 (520)
.+++..|.+.++ ..-+..++.+-|++|++-+++|. .|...-...+-. .... +.+ .++
T Consensus 254 a~~~~~~~~~~~-~~~~~r~l~~dg~~~~l~gl~G~-~~~t~~~en~g~---i~~t---~v~----------Sr~----- 310 (389)
T PF00860_consen 254 AVARIAGKDDPR-PPRIRRGLLADGLGTILAGLFGT-SPTTTYSENAGG---IAAT---GVA----------SRR----- 310 (389)
T ss_dssp HHHHHHTS-TCC-CCCHHHHHHHHHHHHHHHHHHT----EEE-HHHHHH---HHHH---TB------------HH-----
T ss_pred HHHHHhCCCCcc-chhhcccceeeeeeeeechhhcC-CCCccccccchh---hhhh---ccc----------cce-----
Confidence 334445555442 23368999999999999999987 665322211111 1111 100 011
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcCccc-hHHHHHHHHH
Q 010009 129 ALIVASSIQIILGYSQVWGLFSRFFSPLG-IAPVVGLVGL 167 (520)
Q Consensus 129 a~~vaGli~illg~~g~~~~l~~~~Pp~V-~G~~v~lIGl 167 (520)
..+.++++.++++++..+..+...+|..| .|..+.+.|.
T Consensus 311 ~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 311 VGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 35677888889998887899999999888 4555555665
No 33
>COG4129 Predicted membrane protein [Function unknown]
Probab=40.86 E-value=4e+02 Score=27.85 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhh
Q 010009 65 IQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYS 143 (520)
Q Consensus 65 i~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~ 143 (520)
+..|.++.+++.++-.++|+..| .||.+.+++.+-.+ -.++.+.+++-++|.++-.++-.+.+.++
T Consensus 13 tlKt~ia~~La~~ia~~l~~~~~-----~~A~i~AV~~l~~t--------~~~s~~~~~~r~~g~~iG~~~a~l~~~l~ 78 (332)
T COG4129 13 TLKTGLAAGLALLIAHLLGLPQP-----AFAGISAVLCLSPT--------IKRSLKRALQRLLGNALGAILAVLFFLLF 78 (332)
T ss_pred HHHHHHHHHHHHHHHHHhCCCch-----HHHHHHHhhcccCc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34666788888888777765554 45555444333211 12445677888888777666555555443
No 34
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=39.52 E-value=5.2e+02 Score=27.84 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=25.9
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceE
Q 010009 51 VHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAV 89 (520)
Q Consensus 51 ~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv 89 (520)
.+..|++..+........++...++.++.+. +|.|..+.
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~ 105 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA 105 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 3447999888776666666666777777764 56665443
No 35
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=39.48 E-value=3.9e+02 Score=31.88 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=104.0
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcchhhhhhHHHHhhhcCCCCCccccccchhhhh-----
Q 010009 273 FSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLG----- 347 (520)
Q Consensus 273 f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l~~dGl~silaglfG~~p~tt~s~en~g~i~----- 347 (520)
|+...+.+.+.+++..+.-++. -+...+++.++.-..+..+++++++.++=++||+-|.+--. ..|-+.
T Consensus 367 ~~~q~laa~ifiyFA~L~PaIa----FG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG--~TGPilvF~~~ 440 (900)
T TIGR00834 367 LNPQCLAAVIFIYFAALSPAIT----FGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVG--FSGPLLVFEEA 440 (900)
T ss_pred hcchhHHHHHHHHHHHhhHHhh----HHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEec--CcccHHHHHHH
Confidence 5566666677777776665543 33333322223456788999999999999999998865432 122111
Q ss_pred ---hccCC-------cchHHHHHHHHHHHHHhhh--HHHHHHHhCChhhhHHHHHHHHHHHHHHHhHhhhhc----cc--
Q 010009 348 ---LTRVG-------SRRVVQISAGFMIFFSCLG--KFGAVFASIPIPIFAALYCVLFGLVASVGLSFLQFT----NM-- 409 (520)
Q Consensus 348 ---~Tg~~-------SR~~~~~ag~~li~l~~~P--k~~~l~~~IP~~V~gg~li~~~g~i~~~Gi~~l~~v----~~-- 409 (520)
..+.. --|+.++.++++++++.+- .+...++-...-+.+...-++| +.-+++.+.+. +.
T Consensus 441 ly~~c~~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IF---I~eai~~L~~~f~~~~~~~ 517 (900)
T TIGR00834 441 FFSFCESNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIF---IYETFSKLIKIFQEHPLQV 517 (900)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCccc
Confidence 01111 1367788888888877664 3334455555555554332222 34455544321 10
Q ss_pred --c-----------C------------------------CccEEeehhHHHhhhhh-hhhhhhccCCCCCCcccccccch
Q 010009 410 --N-----------C------------------------MRNLVITGLSLFLGISI-PQFFNEYWNPQHHGLVHTNAGWF 451 (520)
Q Consensus 410 --~-----------~------------------------~rn~~Ivg~sl~~Gl~~-p~~~~~~~~~~~~~p~~~~~~~l 451 (520)
+ . ..|....++-+.+|.-. .-++.++. ..+ .+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk----~s~------yf 587 (900)
T TIGR00834 518 FYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFK----NSR------YF 587 (900)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhC----CCC------cC
Confidence 0 0 02233334444444422 33333321 112 37
Q ss_pred hHHHHHHhcc-hhHHHHHHHHHHhhcCC
Q 010009 452 NAFLNTIFSS-PPTVGLIVAVFLDNTLE 478 (520)
Q Consensus 452 p~~~~~~l~~-gi~~g~l~aiiLn~~~~ 478 (520)
|..+|.++++ ++.++.++...++..++
T Consensus 588 ~~~vR~~isDfgv~iaI~~~t~v~~~~~ 615 (900)
T TIGR00834 588 PGKARRLIGDFGVPISILIMVLVDIFIG 615 (900)
T ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 8888888866 78888888888888665
No 36
>PRK10489 enterobactin exporter EntS; Provisional
Probab=39.37 E-value=4.4e+02 Score=27.39 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEec
Q 010009 23 PPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVVGG 92 (520)
Q Consensus 23 ~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv~gp 92 (520)
+.++..+...+-..+.+....+..|..+.+ .+.++.+...+.....+...+++++.+. +|.|..+..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~ 89 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLAR 89 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehH
Confidence 344444444444444444445567877766 5778888888888888888888887765 56565555443
No 37
>PLN02776 prenyltransferase
Probab=32.21 E-value=6.2e+02 Score=26.59 Aligned_cols=12 Identities=0% Similarity=-0.169 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHH
Q 010009 212 RFPVLISVTIIW 223 (520)
Q Consensus 212 ~~aiLigi~vg~ 223 (520)
.++..+|.+.|.
T Consensus 124 ~~~~~lG~~~Ga 135 (341)
T PLN02776 124 PANTWVGAVVGA 135 (341)
T ss_pred chhHHHHHHHHH
Confidence 556788887775
No 38
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=30.58 E-value=9e+02 Score=28.19 Aligned_cols=44 Identities=7% Similarity=0.075 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEE
Q 010009 46 IPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVV 90 (520)
Q Consensus 46 ~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv~ 90 (520)
.|.+.. ..|++..+...+.+...+...+++++.++ +|.|..++.
T Consensus 190 lp~i~~-~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii 237 (742)
T TIGR01299 190 LPSAEK-DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237 (742)
T ss_pred HHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 344433 37899888888888888889999988876 565554443
No 39
>PRK10720 uracil transporter; Provisional
Probab=30.57 E-value=2.1e+02 Score=30.84 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 010009 65 IQTLLFVSGINTLLQALFGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQ 144 (520)
Q Consensus 65 i~at~l~sGi~Tllq~~~G~rlPiv~gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g 144 (520)
+...+++-|++|++-+++| ..|..-=..... +.+.-+. . ..+ ....+|++.+++++++
T Consensus 262 ~~r~l~adGlatii~glfG-~~p~tty~en~g------~ia~T~v------~----sr~-----v~~~a~~~li~lg~~p 319 (428)
T PRK10720 262 LHRSMFANGLSTVISGFFG-STPNTTYGENIG------VMAITRV------Y----STW-----VIGGAAIIAILLSCVG 319 (428)
T ss_pred ccchHhhhhHHHHHHHhcC-CCCccccccccc------eeeeccc------c----hhH-----HHHHHHHHHHHHHHHH
Confidence 5788899999999999986 456521000000 0000000 0 111 1345888999999987
Q ss_pred hHHHHhhhcCccchHHHHH
Q 010009 145 VWGLFSRFFSPLGIAPVVG 163 (520)
Q Consensus 145 ~~~~l~~~~Pp~V~G~~v~ 163 (520)
-...+...+|..|.|.+..
T Consensus 320 k~~a~ia~iP~pVlgg~~i 338 (428)
T PRK10720 320 KLAAAIQAIPLPVMGGVSL 338 (428)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 7899999999888776643
No 40
>PRK11663 regulatory protein UhpC; Provisional
Probab=30.12 E-value=3.5e+02 Score=28.54 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=29.1
Q ss_pred HhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010009 43 SVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALF 82 (520)
Q Consensus 43 ~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~ 82 (520)
....|.+..+ .|++..+...+.+...+..+++.++-+.+
T Consensus 43 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l 81 (434)
T PRK11663 43 NAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIV 81 (434)
T ss_pred HHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3445666555 89999888888888888888888877763
No 41
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=29.78 E-value=21 Score=27.88 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=2.2
Q ss_pred hhHHHHHHHHHHhhcCCCcCcccccCCcccccccccCCCCCC
Q 010009 462 PPTVGLIVAVFLDNTLEVEKSKKDRGMPWWVKFRTFRGDNRN 503 (520)
Q Consensus 462 gi~~g~l~aiiLn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (520)
|.++|.+++++|=+++-.+-++|..| ++..||.+
T Consensus 17 G~Vvgll~ailLIlf~iyR~rkkdEG--------SY~l~e~K 50 (64)
T PF01034_consen 17 GGVVGLLFAILLILFLIYRMRKKDEG--------SYDLDEPK 50 (64)
T ss_dssp --------------------S--------------SS--S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--------CccCCCCC
Confidence 66678888888876664434455666 55555554
No 42
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=25.62 E-value=9.1e+02 Score=26.40 Aligned_cols=125 Identities=8% Similarity=0.025 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhHH-HHHH---HHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEechhhh
Q 010009 25 WAETILLAFQNYILMLGTSVMI-PTLL---VHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVVGGSFAY 96 (520)
Q Consensus 25 ~~~~i~~GlQ~~l~m~~~~i~~-P~il---~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv~gpsfa~ 96 (520)
.++.+....--+...+..-... |+.. ....|++++|...+.+.-.++.++.-+..+. +|.|..+..+.....
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3455666555555555433333 2222 2248899999888887777777777565554 688876644443322
Q ss_pred HHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHH
Q 010009 97 VIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPV 161 (520)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~ 161 (520)
++............ .++...+..-++.|+--... ....+.+.+++|+.--|..
T Consensus 112 i~~~~~~~a~~~~~----------~s~~~lli~r~l~Gigg~~f--~~~~~~vs~wfp~~~rG~A 164 (462)
T PRK15034 112 IPCVWLGIAVQNPN----------TPFGIFIVIALLCGFAGANF--ASSMGNISFFFPKAKQGSA 164 (462)
T ss_pred HHHHHHHHHHcccC----------CCHHHHHHHHHHHHHHHHhH--HHHHHHHHHHCCHhHhHHH
Confidence 22221111000000 13444444444555432222 2234778899999866653
No 43
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=25.20 E-value=9.6e+02 Score=26.57 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceE--EechhhhHH
Q 010009 21 SNPPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGTRLPAV--VGGSFAYVI 98 (520)
Q Consensus 21 e~~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~G~rlPiv--~gpsfa~~~ 98 (520)
.++..+..+..+.-..+.........|++..+..|.++.....+..+.-+.+-+++++...+..|++.- ..-+....+
T Consensus 216 ~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a 295 (524)
T PF05977_consen 216 SSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA 295 (524)
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence 345556555555554444333444568888777888887777777666666677777776654443321 111111111
Q ss_pred HHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHH
Q 010009 99 PIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIAPVV 162 (520)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G~~v 162 (520)
...... +.. .....+..+.++.|......-. .....+++..|+.+.|=+.
T Consensus 296 ~~~~~l---al~----------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~ 345 (524)
T PF05977_consen 296 LALLLL---ALS----------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVF 345 (524)
T ss_pred HHHHHH---hcc----------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHH
Confidence 111111 110 2334455667777776655432 3446678888887766543
No 44
>PRK03893 putative sialic acid transporter; Provisional
Probab=23.53 E-value=9e+02 Score=25.62 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHHHhh---HhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcce
Q 010009 24 PWAETILLAFQNYILMLGT---SVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPA 88 (520)
Q Consensus 24 ~~~~~i~~GlQ~~l~m~~~---~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPi 88 (520)
.++......+..++..+.. ....|.+. +..|.++++...+.+...+...++.++.+. +|.|.-+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 88 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQ-GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM 88 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 3444444444444433322 22345554 447999988888888888888888888775 5555433
No 45
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=23.40 E-value=9.9e+02 Score=26.06 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=27.8
Q ss_pred HHHHhhHhHHHHHHHHhc---CCChhhHHHHHHHHHHHHHHHHHHHHH---hCCCcce
Q 010009 37 ILMLGTSVMIPTLLVHAM---GGSNGDKARVIQTLLFVSGINTLLQAL---FGTRLPA 88 (520)
Q Consensus 37 l~m~~~~i~~P~il~~a~---gl~~~~~~~li~at~l~sGi~Tllq~~---~G~rlPi 88 (520)
..+++.....+-+..... +++- .+-+.+.++...++++.+++ +|.|..+
T Consensus 27 ~vWfga~~~ias~~~G~ll~~~L~~---~~si~aillG~llG~i~~A~~s~~Ga~~Gl 81 (442)
T COG1457 27 LVWFGANFTIASMVTGGLLVPGLSF---GQSLLAILLGNLLGGIFMAYFSYQGARTGL 81 (442)
T ss_pred HHHHHhHhHHHHHHHhccccccccH---HHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 344455555555544432 2333 44466777888888888776 4555443
No 46
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=22.89 E-value=8e+02 Score=25.08 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhHh---HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEe
Q 010009 31 LAFQNYILMLGTSV---MIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVVG 91 (520)
Q Consensus 31 ~GlQ~~l~m~~~~i---~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv~g 91 (520)
.-+.+++..+...+ ..|..+.+..|.++.+...+.+...+...++.++-+. +|.|..+..+
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG 87 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence 44444444444333 4455556668999988888888888888888887775 5666555433
No 47
>PHA03255 BDLF3; Provisional
Probab=22.74 E-value=1.7e+02 Score=27.42 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=25.4
Q ss_pred CCCCCCCCCCccCcccccCCCCCHHHHHHHHHHHHH
Q 010009 2 AEYSHPPMDQLQDLEYCIDSNPPWAETILLAFQNYI 37 (520)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~e~~~~~~~i~~GlQ~~l 37 (520)
||-+.||-|+++...|++ |+|+.++-||+..+
T Consensus 165 aelpt~pdekqps~~~gl----plwtlvfvgltflm 196 (234)
T PHA03255 165 AELPTVPDERQPSLSYGL----PLWTLVFVGLTFLM 196 (234)
T ss_pred ccCCCCCcccCcccccCc----hHHHHHHHHHHHHH
Confidence 577778888888887775 78999999998654
No 48
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=1.7e+02 Score=26.67 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=35.2
Q ss_pred cCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHH
Q 010009 350 RVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVA 397 (520)
Q Consensus 350 g~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~ 397 (520)
+-.+|.+.+.++++.+++|.+- .++.=|....++++-++-|.+.
T Consensus 29 r~l~rl~gilgaf~~~~fGvf~----~ITls~~c~vAgvlqm~agfiv 72 (175)
T KOG4085|consen 29 RWLCRLSGILGAFSCAIFGVFN----CITLSPLCIVAGVLQMMAGFIV 72 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----HHhhhHHHHHHHHHHHHHHHHH
Confidence 3456888999999999988766 8888899999998887766654
No 49
>PF13142 DUF3960: Domain of unknown function (DUF3960)
Probab=20.77 E-value=45 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=26.8
Q ss_pred HHhhcCCCc--CcccccCCcccccccccCCCCC-------CCccccCCcc
Q 010009 472 FLDNTLEVE--KSKKDRGMPWWVKFRTFRGDNR-------NEEFYTLPFN 512 (520)
Q Consensus 472 iLn~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 512 (520)
+..++.|.+ ++.|||.+.+|++..-+.+++- +++.|.+|-.
T Consensus 24 l~~llvp~~pkg~~KerTIl~w~~KefyKeenli~~i~Ygm~~~~~lp~y 73 (87)
T PF13142_consen 24 LFSLLVPCEPKGEDKERTILMWKEKEFYKEENLIPFILYGMKKGYQLPQY 73 (87)
T ss_pred HHHHhcCCCCCCCCceeEEeeechhhHHhhhccceeEEeeccccccCccc
Confidence 445677643 4789999999999443444332 5566777754
No 50
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=20.18 E-value=7.4e+02 Score=25.50 Aligned_cols=63 Identities=8% Similarity=0.055 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHHHhhHhHH---HHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcc
Q 010009 24 PWAETILLAFQNYILMLGTSVMI---PTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLP 87 (520)
Q Consensus 24 ~~~~~i~~GlQ~~l~m~~~~i~~---P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlP 87 (520)
-+...+...+-+++..+...... |.+. +..|.++++.....+...+...++.++.+. +|.|..
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 80 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV 80 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 45555566666654333333333 3333 458999888887777777777887777764 554443
No 51
>PRK10739 putative antibiotic transporter; Provisional
Probab=20.09 E-value=3.7e+02 Score=25.84 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=19.7
Q ss_pred HHHHhhhcCcc-------chHHHHHHHHHHhHHhhhc
Q 010009 146 WGLFSRFFSPL-------GIAPVVGLVGLGLFQRGFP 175 (520)
Q Consensus 146 ~~~l~~~~Pp~-------V~G~~v~lIGl~l~~~~~~ 175 (520)
-+++.|++.+. ++|.+++.||+..+-.|++
T Consensus 156 s~~i~~~LG~~g~~vi~RimGllLaaiavq~i~~Gi~ 192 (197)
T PRK10739 156 SSLFLRLLGEKGVNALERLMGLILVMLSTQMFLDGIR 192 (197)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777787764 4666677777766655543
Done!