Query 010009
Match_columns 520
No_of_seqs 217 out of 1848
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1.4E-69 4.8E-74 574.6 30.4 391 13-480 2-409 (429)
2 3qe7_A Uracil permease; uracil 73.9 13 0.00045 38.6 10.0 77 314-391 44-131 (429)
3 3o7q_A L-fucose-proton symport 71.8 44 0.0015 33.1 13.3 122 24-159 24-152 (438)
4 4aps_A DI-OR tripeptide H+ sym 30.3 4E+02 0.014 26.5 12.1 38 44-81 34-76 (491)
5 1pw4_A Glycerol-3-phosphate tr 29.0 3.5E+02 0.012 26.3 11.3 38 44-81 273-310 (451)
6 1pw4_A Glycerol-3-phosphate tr 20.7 1.9E+02 0.0065 28.3 7.3 55 25-81 27-84 (451)
7 2gfp_A EMRD, multidrug resista 14.7 7.4E+02 0.025 23.3 11.3 43 47-90 24-70 (375)
8 3o7q_A L-fucose-proton symport 11.9 4.1E+02 0.014 25.7 7.1 60 22-81 257-317 (438)
9 1bts_A BAND 3 anion transport 8.7 88 0.003 19.1 0.4 22 314-335 4-25 (26)
10 2xut_A Proton/peptide symporte 8.1 1.4E+03 0.049 22.4 11.7 38 45-82 34-77 (524)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=1.4e-69 Score=574.57 Aligned_cols=391 Identities=25% Similarity=0.451 Sum_probs=348.2
Q ss_pred cCcccccCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh-CCCcceEEe
Q 010009 13 QDLEYCIDSNPPWAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALF-GTRLPAVVG 91 (520)
Q Consensus 13 ~~~~~~~~e~~~~~~~i~~GlQ~~l~m~~~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~-G~rlPiv~g 91 (520)
.|+.|++|||+|+++++++|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|.++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 35789999999999999999999999999999999996 8886 58999999999999987 899999999
Q ss_pred chhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhh--hhH-HHHhhhcCccchHHHHHHHHHH
Q 010009 92 GSFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYS--QVW-GLFSRFFSPLGIAPVVGLVGLG 168 (520)
Q Consensus 92 psfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~--g~~-~~l~~~~Pp~V~G~~v~lIGl~ 168 (520)
+||+|++++..+.. ++|++++|+++++|+++++++++ +++ +|++|+|||+|+|.++++||++
T Consensus 71 ~sfafi~~~~~i~~---------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~ 135 (429)
T 3qe7_A 71 SSFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 135 (429)
T ss_dssp ECGGGHHHHHHHGG---------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence 99999988776643 36999999999999999999987 554 7999999999999999999999
Q ss_pred hHHhhhcccc-----------chhhhHHHHHHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHHHHHHhhCCCCC
Q 010009 169 LFQRGFPLLG-----------NCVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRG 237 (520)
Q Consensus 169 l~~~~~~~~~-----------~~~~i~l~~l~l~i~l~~~~~~~~p~~~~~~~~~~aiLigi~vg~iva~~~g~~~~~~~ 237 (520)
+++.++++.+ .++.+++.+++++++++++.| +++|++++|+|+++||++++.+|..
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k--------g~~~~~aiLigivvg~~~a~~~G~~----- 202 (429)
T 3qe7_A 136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR--------GFLAIIPILIGVLVGYALSFAMGIV----- 202 (429)
T ss_dssp HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS--------TTTTTHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc--------ccchhhHHHHHHHHHHHHHHHhcCC-----
Confidence 9998876532 256788888888877766554 4579999999999999999999853
Q ss_pred CCCccccccccCccCcCCCCCccccCccccccCCccchhHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCccCCcch
Q 010009 238 KPYTTQISCRTDRANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGI 317 (520)
Q Consensus 238 ~~~~~~~~~~vd~~~~i~~~p~~~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~i~r~l 317 (520)
|++. +.++||+++|. |+.|+||++.+..++++++++++|++|++.++++.++++.+++++.||++
T Consensus 203 -----------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l 267 (429)
T 3qe7_A 203 -----------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSM 267 (429)
T ss_dssp -----------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHH
T ss_pred -----------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHH
Confidence 4432 45678999994 56789999999999999999999999999999999987655678999999
Q ss_pred hhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHH
Q 010009 318 GWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVA 397 (520)
Q Consensus 318 ~~dGl~silaglfG~~p~tt~s~en~g~i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~ 397 (520)
.+||++|+++|+||++|+|+|+ ||+|+++.||++||++...+|+++++++++||++++++.||.||+||+++++||++.
T Consensus 268 ~adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~ 346 (429)
T 3qe7_A 268 FANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIG 346 (429)
T ss_dssp HHHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhh--hhccccCCccEEeehhHHHhhhhhhhhhhhccCCCCCCcccccccchhHHHHHHhcchhHHHHHHHHHHhh
Q 010009 398 SVGLSFL--QFTNMNCMRNLVITGLSLFLGISIPQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVGLIVAVFLDN 475 (520)
Q Consensus 398 ~~Gi~~l--~~v~~~~~rn~~Ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~ 475 (520)
.+|+|++ +++|++++||.+|+++++.+|++... +| ++.+..||+++|+++|++||+
T Consensus 347 ~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~ 404 (429)
T 3qe7_A 347 ASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSL 404 (429)
T ss_dssp HHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHH
Confidence 9999999 89999988999999999999997421 11 234678999999999999999
Q ss_pred cCCCc
Q 010009 476 TLEVE 480 (520)
Q Consensus 476 ~~~~~ 480 (520)
++|++
T Consensus 405 ~l~~~ 409 (429)
T 3qe7_A 405 IFKLI 409 (429)
T ss_dssp HHTCC
T ss_pred HhcCc
Confidence 99964
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=73.94 E-value=13 Score=38.58 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=48.5
Q ss_pred CcchhhhhhHHHHhhhcCCCCCccccccchhh----hhhccCCc----chHHHHHHHHHHHHHhh-hHH--HHHHHhCCh
Q 010009 314 SRGIGWQGIGILLDGLFGTGTGSTVSVENVGL----LGLTRVGS----RRVVQISAGFMIFFSCL-GKF--GAVFASIPI 382 (520)
Q Consensus 314 ~r~l~~dGl~silaglfG~~p~tt~s~en~g~----i~~Tg~~S----R~~~~~ag~~li~l~~~-Pk~--~~l~~~IP~ 382 (520)
+.++++.|++|++-++++..+.-.+.+.|-+. ....+ .+ .-+.+.+|++.++++++ .|+ ..+...+|.
T Consensus 44 ~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Pp 122 (429)
T 3qe7_A 44 ATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPP 122 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCC
Confidence 36899999999999888655432223233332 11122 22 12356678888888876 233 469999999
Q ss_pred hhhHHHHHH
Q 010009 383 PIFAALYCV 391 (520)
Q Consensus 383 ~V~gg~li~ 391 (520)
.|+|.+...
T Consensus 123 vviG~~i~~ 131 (429)
T 3qe7_A 123 AAMGAIVAV 131 (429)
T ss_dssp HHHHHHHHH
T ss_pred eeeHHHHHH
Confidence 888887654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=71.85 E-value=44 Score=33.08 Aligned_cols=122 Identities=8% Similarity=-0.005 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHHHHh---hHhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEechhhh
Q 010009 24 PWAETILLAFQNYILMLG---TSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVVGGSFAY 96 (520)
Q Consensus 24 ~~~~~i~~GlQ~~l~m~~---~~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv~gpsfa~ 96 (520)
.+...+...+-.++..+. .....|.+ .+..|.+..+...+.+...+...++.++.+. +|.|..++.+.....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 444444444444433322 12234554 4458999999888888888888888888775 565555544443222
Q ss_pred HHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchH
Q 010009 97 VIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIA 159 (520)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~illg~~g~~~~l~~~~Pp~V~G 159 (520)
+........... .++...+.+.++.|+..-..... ....+.+.+|+.--+
T Consensus 103 ~~~~~~~~~~~~------------~~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~ 152 (438)
T 3o7q_A 103 LGAALFWPAAEI------------MNYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGH 152 (438)
T ss_dssp HHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHH
T ss_pred HHHHHHHhcccc------------ccHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHH
Confidence 221111000000 23455555566666555443322 236677888876544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=30.31 E-value=4e+02 Score=26.48 Aligned_cols=38 Identities=3% Similarity=0.038 Sum_probs=30.1
Q ss_pred hHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010009 44 VMIPTLLVHA-----MGGSNGDKARVIQTLLFVSGINTLLQAL 81 (520)
Q Consensus 44 i~~P~il~~a-----~gl~~~~~~~li~at~l~sGi~Tllq~~ 81 (520)
...|..+.+. .|.+..+...+.+...+...++.++.+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~ 76 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGF 76 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666665 8999999988888888888888888875
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=29.04 E-value=3.5e+02 Score=26.31 Aligned_cols=38 Identities=16% Similarity=-0.024 Sum_probs=25.2
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010009 44 VMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL 81 (520)
Q Consensus 44 i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~ 81 (520)
...|..+.+..|.++.+...+.....+...++.++.+.
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666557888877776666666666666666665
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.73 E-value=1.9e+02 Score=28.31 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhh---HhHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010009 25 WAETILLAFQNYILMLGT---SVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL 81 (520)
Q Consensus 25 ~~~~i~~GlQ~~l~m~~~---~i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~ 81 (520)
++......+.+++..+.. ....|.+..+ . .+..+...+.+...+...++.++-+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~ 84 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGS 84 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444555555444332 2233444333 5 77778888888888888888888775
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=14.70 E-value=7.4e+02 Score=23.26 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=30.5
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEE
Q 010009 47 PTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVV 90 (520)
Q Consensus 47 P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv~ 90 (520)
|.+ .+..|.++++...+.+...+...++.++-+. +|.|..+..
T Consensus 24 ~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 70 (375)
T 2gfp_A 24 ADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILV 70 (375)
T ss_dssp HHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHH
T ss_pred HHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 443 3447899988888888888888888888776 465555543
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=11.89 E-value=4.1e+02 Score=25.74 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHhHHHHH-HHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010009 22 NPPWAETILLAFQNYILMLGTSVMIPTL-LVHAMGGSNGDKARVIQTLLFVSGINTLLQAL 81 (520)
Q Consensus 22 ~~~~~~~i~~GlQ~~l~m~~~~i~~P~i-l~~a~gl~~~~~~~li~at~l~sGi~Tllq~~ 81 (520)
++..+..++..+-............|.. +.+..|.+.++...+.....+...++.++-++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333445666 66656999877776666666666666666654
No 9
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=8.72 E-value=88 Score=19.12 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=16.2
Q ss_pred CcchhhhhhHHHHhhhcCCCCC
Q 010009 314 SRGIGWQGIGILLDGLFGTGTG 335 (520)
Q Consensus 314 ~r~l~~dGl~silaglfG~~p~ 335 (520)
++.+++.+++.++-++|++-|.
T Consensus 4 ~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 4 SELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHhcccC
Confidence 5678889999999999988764
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=8.06 E-value=1.4e+03 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=28.4
Q ss_pred HHHHHHHHhcC------CChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010009 45 MIPTLLVHAMG------GSNGDKARVIQTLLFVSGINTLLQALF 82 (520)
Q Consensus 45 ~~P~il~~a~g------l~~~~~~~li~at~l~sGi~Tllq~~~ 82 (520)
..|..+.+..| .+..+...+.+...+...++.++-+.+
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l 77 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWI 77 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566678 888888888888888888888887763
Done!