Query 010009
Match_columns 520
No_of_seqs 217 out of 1848
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 17:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010009.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010009hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 13.4 1.5E+02 0.011 25.6 6.6 44 46-89 30-77 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 12.5 4.1E+02 0.03 23.0 11.4 37 46-82 272-308 (447)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 11.9 2.8E+02 0.021 24.2 8.4 36 44-81 46-81 (447)
4 d2fug71 d.82.2.2 (7:3-129) NAD 3.2 1.7E+02 0.012 22.4 0.8 13 502-514 41-53 (127)
5 d1lmma_ g.3.6.2 (A:) Psalmotox 2.9 1.6E+02 0.011 17.6 0.2 15 485-499 18-32 (40)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 2.1 6.4E+02 0.047 14.0 2.4 15 212-226 11-25 (32)
7 d1q90g_ f.23.26.1 (G:) PetG su 1.7 8E+02 0.058 13.7 2.3 6 366-371 10-15 (30)
8 d1xrda1 f.3.1.1 (A:1-52) Light 1.6 8.4E+02 0.061 15.6 2.5 16 354-369 11-26 (52)
9 d1v8ca2 d.129.5.1 (A:88-165) M 1.6 1.9E+02 0.014 19.9 -1.0 16 497-512 21-36 (78)
10 d1cola_ f.1.1.1 (A:) Colicin A 1.6 1.8E+03 0.13 17.6 5.5 46 346-398 136-181 (197)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.42 E-value=1.5e+02 Score=25.56 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceE
Q 010009 46 IPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAV 89 (520)
Q Consensus 46 ~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~----~G~rlPiv 89 (520)
.|..+.+..|+++.|...+.+...+...++.++.+. +|.|..++
T Consensus 30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~ 77 (417)
T d1pv7a_ 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 355566778999999988888888888888888875 57666554
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.52 E-value=4.1e+02 Score=22.99 Aligned_cols=37 Identities=16% Similarity=0.025 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010009 46 IPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALF 82 (520)
Q Consensus 46 ~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~~ 82 (520)
.|..+.+..+.+.++.........+...+++++.+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 4555555578888887777777777777788877653
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.94 E-value=2.8e+02 Score=24.25 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010009 44 VMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL 81 (520)
Q Consensus 44 i~~P~il~~a~gl~~~~~~~li~at~l~sGi~Tllq~~ 81 (520)
++.|.+ .+ .|++..|...+.+...+..+++.++-+.
T Consensus 46 ~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~ 81 (447)
T d1pw4a_ 46 LAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGS 81 (447)
T ss_dssp HHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444654 23 7999999999888888889999988876
No 4
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=3.17 E-value=1.7e+02 Score=22.41 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=10.3
Q ss_pred CCCccccCCcccc
Q 010009 502 RNEEFYTLPFNLN 514 (520)
Q Consensus 502 ~~~~~~~~~~~~~ 514 (520)
++++.|+||.-++
T Consensus 41 RMERpYdLPTTvM 53 (127)
T d2fug71 41 RMERPYDLPTTIM 53 (127)
T ss_dssp CCSSCCCCSCSEE
T ss_pred hccccccCChhhe
Confidence 4788999998654
No 5
>d1lmma_ g.3.6.2 (A:) Psalmotoxin 1 {Spider (Psalmopoeus cambridgei) [TaxId: 179874]}
Probab=2.88 E-value=1.6e+02 Score=17.55 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=11.2
Q ss_pred ccCCcccccccccCC
Q 010009 485 DRGMPWWVKFRTFRG 499 (520)
Q Consensus 485 ~~~~~~~~~~~~~~~ 499 (520)
-.||+-|.++++++.
T Consensus 18 ceglecwkrrrsfev 32 (40)
T d1lmma_ 18 CEGLECWKRRRSFEV 32 (40)
T ss_dssp SSSCEEEECSSSCEE
T ss_pred hhhHHHHHhccceeE
Confidence 458889998777654
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.13 E-value=6.4e+02 Score=13.97 Aligned_cols=15 Identities=7% Similarity=0.312 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHH
Q 010009 212 RFPVLISVTIIWIYS 226 (520)
Q Consensus 212 ~~aiLigi~vg~iva 226 (520)
..+...|+.+|.+.+
T Consensus 11 fialffgiavgiifa 25 (32)
T d2e74e1 11 FIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhheee
Confidence 344556666666554
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.67 E-value=8e+02 Score=13.66 Aligned_cols=6 Identities=0% Similarity=0.069 Sum_probs=3.4
Q ss_pred HHHhhh
Q 010009 366 FFSCLG 371 (520)
Q Consensus 366 ~l~~~P 371 (520)
++|++|
T Consensus 10 vlGlip 15 (30)
T d1q90g_ 10 VLGLVP 15 (30)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 455555
No 8
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=1.62 E-value=8.4e+02 Score=15.56 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=9.5
Q ss_pred chHHHHHHHHHHHHHh
Q 010009 354 RRVVQISAGFMIFFSC 369 (520)
Q Consensus 354 R~~~~~ag~~li~l~~ 369 (520)
|++.+.-++|+.++++
T Consensus 11 Rr~lva~~~fL~~LAl 26 (52)
T d1xrda1 11 RQALVGLATFLFVLAL 26 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666655554
No 9
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=1.56 E-value=1.9e+02 Score=19.87 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=10.9
Q ss_pred cCCCCCCCccccCCcc
Q 010009 497 FRGDNRNEEFYTLPFN 512 (520)
Q Consensus 497 ~~~~~~~~~~~~~~~~ 512 (520)
|-.+.+.+++|+||--
T Consensus 21 wgg~~e~egv~rlpga 36 (78)
T d1v8ca2 21 WGGTREGEGVYRLPGA 36 (78)
T ss_dssp TTCEEEETTEEEETTE
T ss_pred hCCccccceEEecCCe
Confidence 5555667788888843
No 10
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=1.55 E-value=1.8e+03 Score=17.60 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhhhHHHHHHHHHHHHH
Q 010009 346 LGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVAS 398 (520)
Q Consensus 346 i~~Tg~~SR~~~~~ag~~li~l~~~Pk~~~l~~~IP~~V~gg~li~~~g~i~~ 398 (520)
....|+++ .+..+++-..++.+. +...+|.-.+|-+.+++++.+..
T Consensus 136 ~~~~~~At---~va~~~fs~~~~~~~----~~~g~~~~~iGI~g~li~~~v~a 181 (197)
T d1cola_ 136 WVLSGIAS---SVALGIFSATLGAYA----LSLGVPAIAVGIAGILLAAVVGA 181 (197)
T ss_dssp HHHTTCCH---HHHHHHHHHHHHHHH----HHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHH---HHHHHHHHHHHHHHH----HHccccccHHHHHHHHHHHHHHH
Done!