Your job contains 1 sequence.
>010010
MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIG
TVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVA
DDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEA
LPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPE
AFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWW
DYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQI
GKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDVDECEEKLA
CQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKDVRSEASWGFVWMVILGLAATGVAG
YAFYKYRIRRYMDSEIRAIMAQYMPLDSQAEVQHASHGDV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010010
(520 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2085136 - symbol:VSR1 "vacuolar sorting recept... 1868 1.5e-234 2
TAIR|locus:2046931 - symbol:VSR4 "vacuolar sorting recept... 1706 4.4e-215 2
TAIR|locus:2046911 - symbol:VSR3 "vaculolar sorting recep... 1722 2.5e-177 1
TAIR|locus:2015726 - symbol:VSR6 "VACUOLAR SORTING RECEPT... 1395 9.6e-174 2
TAIR|locus:2044782 - symbol:VSR5 "VACUOLAR SORTING RECEPT... 1286 5.9e-161 2
TIGR_CMR|SO_3800 - symbol:SO_3800 "serine protease, subti... 144 4.0e-06 1
TAIR|locus:2198733 - symbol:SPPL5 "SIGNAL PEPTIDE PEPTIDA... 130 4.6e-05 1
UNIPROTKB|E2QZ01 - symbol:RNF13 "Uncharacterized protein"... 115 7.2e-05 2
RGD|1594062 - symbol:Rnf13 "ring finger protein 13" speci... 112 0.00012 2
UNIPROTKB|O43567 - symbol:RNF13 "E3 ubiquitin-protein lig... 112 0.00015 2
UNIPROTKB|Q5RCV8 - symbol:RNF13 "E3 ubiquitin-protein lig... 112 0.00015 2
MGI|MGI:1346341 - symbol:Rnf13 "ring finger protein 13" s... 111 0.00016 2
TAIR|locus:2040971 - symbol:SPPL3 "SIGNAL PEPTIDE PEPTIDA... 125 0.00016 1
UNIPROTKB|F6XCX3 - symbol:RNF13 "Uncharacterized protein"... 109 0.00033 2
UNIPROTKB|C9J8T4 - symbol:RNF13 "E3 ubiquitin-protein lig... 108 0.00047 1
UNIPROTKB|C9JYN7 - symbol:RNF13 "E3 ubiquitin-protein lig... 108 0.00053 1
UNIPROTKB|I3LG86 - symbol:RNF13 "Ring finger protein 13" ... 107 0.00054 2
UNIPROTKB|F1NUJ3 - symbol:RNF13 "E3 ubiquitin-protein lig... 102 0.00060 2
TAIR|locus:2026684 - symbol:SPPL2 "SIGNAL PEPTIDE PEPTIDA... 118 0.00095 1
>TAIR|locus:2085136 [details] [associations]
symbol:VSR1 "vacuolar sorting receptor homolog 1"
species:3702 "Arabidopsis thaliana" [GO:0005509 "calcium ion
binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0005887 "integral to plasma membrane"
evidence=ISS] [GO:0006623 "protein targeting to vacuole"
evidence=IGI;ISS;IMP;TAS] [GO:0005886 "plasma membrane"
evidence=ISS;IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
[GO:0005802 "trans-Golgi network" evidence=IDA;TAS] [GO:0009940
"amino-terminal vacuolar sorting propeptide binding" evidence=IDA]
[GO:0017119 "Golgi transport complex" evidence=IPI] [GO:0007034
"vacuolar transport" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006896 "Golgi to vacuole transport"
evidence=ISS;IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
InterPro:IPR001881 InterPro:IPR018097 Pfam:PF07645 PROSITE:PS01187
PROSITE:PS50026 InterPro:IPR003137 Pfam:PF02225 GO:GO:0005783
GO:GO:0016021 GO:GO:0005886 GO:GO:0005794 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000139 GO:GO:0031902 GO:GO:0005509
PROSITE:PS00022 PROSITE:PS01186 PROSITE:PS00010 GO:GO:0030665
GO:GO:0006896 GO:GO:0006623 EMBL:AL132969 UniGene:At.24701
UniGene:At.60941 EMBL:U86700 EMBL:U79959 EMBL:Y07917 EMBL:AY048289
IPI:IPI00520575 PIR:T47542 RefSeq:NP_190853.1
ProteinModelPortal:P93026 SMR:P93026 IntAct:P93026 STRING:P93026
PaxDb:P93026 PRIDE:P93026 EnsemblPlants:AT3G52850.1 GeneID:824451
KEGG:ath:AT3G52850 TAIR:At3g52850 eggNOG:NOG286724
HOGENOM:HOG000241019 InParanoid:P93026 OMA:YSACVDD PhylomeDB:P93026
ProtClustDB:CLSN2682336 Genevestigator:P93026 GermOnline:AT3G52850
GO:GO:0009940 Uniprot:P93026
Length = 623
Score = 1868 (662.6 bits), Expect = 1.5e-234, Sum P(2) = 1.5e-234
Identities = 335/443 (75%), Positives = 390/443 (88%)
Query: 4 KLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVV 63
KLG L+ L+ GRFVVEKN+LKVTSP+ IKG+YECAIGNFGVPQYGGTL+GTVV
Sbjct: 2 KLGLFTLSFLLILNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVV 61
Query: 64 YPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123
YPK+NQKACK + + D+SFKS+PG LPTF+L+DRGDCYFTLKAW AQ+ GAAAILVAD K
Sbjct: 62 YPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSK 121
Query: 124 TEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPH 183
EPLITMDTPEE+ +DA+YLQNITIPSALI+K+LGDSIK +LSGG+MVNM LDWTE++PH
Sbjct: 122 AEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPH 181
Query: 184 PDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFI 243
PDERVEYE WTNSNDECG KC++QI+F+KNFKGAAQILE+ G+TQFTPHYITWYCPEAF
Sbjct: 182 PDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHTQFTPHYITWYCPEAFT 241
Query: 244 LSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYV 303
LSKQCKSQCINHGRYCAPDPEQDF++GYDGKDVVVQNLRQAC ++V N++ KPW+WWDYV
Sbjct: 242 LSKQCKSQCINHGRYCAPDPEQDFTKGYDGKDVVVQNLRQACVYRVMNDTGKPWVWWDYV 301
Query: 304 TDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKG 363
TDFAIRCPMKEKKYTKECA+ +IKSLG+DLKKVD+C+GDPEADV+N VLK EQ++QIGKG
Sbjct: 302 TDFAIRCPMKEKKYTKECADGIIKSLGIDLKKVDKCIGDPEADVENPVLKAEQESQIGKG 361
Query: 364 SRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDVD--EC-EEKLA 420
SRGDVTILPTLV+NNRQYRGKL+KGAVLKA+C+GFQE+TEPAICL+ED++ EC E
Sbjct: 362 SRGDVTILPTLVVNNRQYRGKLEKGAVLKAMCSGFQESTEPAICLTEDLETNECLENNGG 421
Query: 421 CQCPECK----CKDTWGSYECSC 439
C + C+DT+ C C
Sbjct: 422 CWQDKAANITACRDTFRGRLCEC 444
Score = 417 (151.9 bits), Expect = 1.5e-234, Sum P(2) = 1.5e-234
Identities = 72/113 (63%), Positives = 88/113 (77%)
Query: 410 EDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS--KDVRSEASWGFVW 467
EDVDEC+EK CQCPECKCK+TWGSYECSC +GLLYM+EHDTCI K ++ SW F+W
Sbjct: 511 EDVDECKEKTVCQCPECKCKNTWGSYECSCSNGLLYMREHDTCIGSGKVGTTKLSWSFLW 570
Query: 468 MVILGLAATGVAGYAFYKYRIRRYMDSEIRAIMAQYMPLDSQAEVQHASHGDV 520
++I+G+ G++GYA YKYRIR YMD+EIR IMAQYMPL+SQ H D+
Sbjct: 571 ILIIGVGVAGLSGYAVYKYRIRSYMDAEIRGIMAQYMPLESQPPNTSGHHMDI 623
>TAIR|locus:2046931 [details] [associations]
symbol:VSR4 "vacuolar sorting receptor 4" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0005887 "integral to plasma membrane"
evidence=ISS] [GO:0005802 "trans-Golgi network" evidence=IDA;TAS]
[GO:0006623 "protein targeting to vacuole" evidence=IGI;ISS;TAS]
[GO:0017119 "Golgi transport complex" evidence=IPI] [GO:0005773
"vacuole" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
[GO:0005768 "endosome" evidence=IDA] InterPro:IPR000742
InterPro:IPR018097 PROSITE:PS01187 PROSITE:PS50026 SMART:SM00181
InterPro:IPR003137 Pfam:PF02225 GO:GO:0016021 GO:GO:0005794
GO:GO:0005773 GO:GO:0000139 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0031902 GO:GO:0005768 GO:GO:0005509 InterPro:IPR013032
PROSITE:PS00022 PROSITE:PS01186 GO:GO:0005802 PROSITE:PS00010
GO:GO:0030665 GO:GO:0006623 InterPro:IPR026823 Pfam:PF12662
EMBL:AC004705 EMBL:AC005398 eggNOG:NOG286724
ProtClustDB:CLSN2682336 EMBL:AY062744 EMBL:BT008390 EMBL:AK220910
IPI:IPI00536103 PIR:T02604 RefSeq:NP_179079.1 RefSeq:NP_849954.1
UniGene:At.22740 UniGene:At.75037 ProteinModelPortal:Q56ZQ3
SMR:Q56ZQ3 PaxDb:Q56ZQ3 PRIDE:Q56ZQ3 EnsemblPlants:AT2G14720.1
EnsemblPlants:AT2G14720.2 GeneID:815960 KEGG:ath:AT2G14720
TAIR:At2g14720 InParanoid:Q56ZQ3 OMA:METNECL PhylomeDB:Q56ZQ3
Genevestigator:Q56ZQ3 GermOnline:AT2G14720 Uniprot:Q56ZQ3
Length = 628
Score = 1706 (605.6 bits), Expect = 4.4e-215, Sum P(2) = 4.4e-215
Identities = 309/449 (68%), Positives = 373/449 (83%)
Query: 1 MREKLGFLVGILFLLCGLS-FG--RFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGT 57
M++ L +L +L L +S F RFVVEKNSL VTSPE IKG ++ AIGNFG+PQYGG+
Sbjct: 1 MKQLLCYLPWLLLLSLVVSPFNEARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGS 60
Query: 58 LIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAI 117
+ GTVVYPK NQK+CK F + +SFKS+PG LPTFLLVDRGDC+F LK WNAQK GA+A+
Sbjct: 61 MAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAV 120
Query: 118 LVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDW 177
LVAD+ EPLITMDTPEE+ + A+Y++NITIPSAL++K G+ +KK++SGG+MVN+NLDW
Sbjct: 121 LVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDW 180
Query: 178 TEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWY 237
EA+PHPD+RVEYE WTNSNDECG KC+ ++FVK+FKGAAQILE+ G+TQF PHYITWY
Sbjct: 181 REAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFRPHYITWY 240
Query: 238 CPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPW 297
CP AF LS+QCKSQCIN GRYCAPDPEQDFS GYDGKDVVV+NLRQ C +KVANE+ KPW
Sbjct: 241 CPHAFTLSRQCKSQCINKGRYCAPDPEQDFSSGYDGKDVVVENLRQLCVYKVANETGKPW 300
Query: 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQD 357
+WWDYVTDF IRCPMKEKKY K+CAE VIKSLG+D +K+D+C+GDP+AD+DN VLK EQD
Sbjct: 301 VWWDYVTDFQIRCPMKEKKYNKDCAESVIKSLGIDSRKIDKCMGDPDADLDNPVLKEEQD 360
Query: 358 AQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDVD--EC 415
AQ+GKG+RGDVTILPTLV+NNRQYRGKL+K AVLKA+C+GF+E+TEPAICLS D++ EC
Sbjct: 361 AQVGKGTRGDVTILPTLVVNNRQYRGKLEKSAVLKALCSGFEESTEPAICLSTDMETNEC 420
Query: 416 -EEKLAC-QCPECK---CKDTWGSYECSC 439
+ C Q CKDT+ C C
Sbjct: 421 LDNNGGCWQDKSANITACKDTFRGKVCVC 449
Score = 395 (144.1 bits), Expect = 4.4e-215, Sum P(2) = 4.4e-215
Identities = 74/137 (54%), Positives = 97/137 (70%)
Query: 385 LDKGAVLKAICA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGL 443
+DK +V K C GF+ + ED++EC+EK ACQCPEC CK+TWGSYECSC L
Sbjct: 494 VDKDSV-KCECPPGFKGD---GVKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549
Query: 444 LYMQEHDTCISKD-VRSEASWGFVWMVILGLAATGVAGYAFYKYRIRRYMDSEIRAIMAQ 502
LYM++HDTCISK + +++W VW+++L L Y YKYR+R+YMDSEIRAIMAQ
Sbjct: 550 LYMRDHDTCISKTGSQVKSAWAAVWLIMLSLGLAAAGAYLVYKYRLRQYMDSEIRAIMAQ 609
Query: 503 YMPLDSQAEVQHASHGD 519
YMPLDSQ EV + ++ +
Sbjct: 610 YMPLDSQPEVPNHTNDE 626
>TAIR|locus:2046911 [details] [associations]
symbol:VSR3 "vaculolar sorting receptor 3" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0005887 "integral to plasma membrane"
evidence=ISS] [GO:0006623 "protein targeting to vacuole"
evidence=ISS;IMP;TAS] [GO:0006886 "intracellular protein transport"
evidence=ISS] [GO:0017119 "Golgi transport complex" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] InterPro:IPR000742
InterPro:IPR018097 PROSITE:PS01187 PROSITE:PS50026 SMART:SM00181
InterPro:IPR003137 Pfam:PF02225 GO:GO:0016021 GO:GO:0005794
GO:GO:0000139 EMBL:CP002685 GO:GO:0016020 GO:GO:0031902
GO:GO:0005768 GO:GO:0005509 InterPro:IPR013032 PROSITE:PS00022
PROSITE:PS01186 GO:GO:0005802 PROSITE:PS00010 GO:GO:0030665
GO:GO:0006623 InterPro:IPR026823 Pfam:PF12662 EMBL:AC004705
EMBL:AC005398 eggNOG:NOG286724 HOGENOM:HOG000241019
ProtClustDB:CLSN2682336 IPI:IPI00531141 PIR:T02602
RefSeq:NP_179081.1 RefSeq:NP_849955.1 UniGene:At.40502
ProteinModelPortal:O80977 SMR:O80977 PaxDb:O80977 PRIDE:O80977
EnsemblPlants:AT2G14740.1 EnsemblPlants:AT2G14740.2 GeneID:815962
KEGG:ath:AT2G14740 TAIR:At2g14740 InParanoid:O80977 OMA:KECADSV
PhylomeDB:O80977 Genevestigator:O80977 GermOnline:AT2G14740
Uniprot:O80977
Length = 628
Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
Identities = 310/442 (70%), Positives = 370/442 (83%)
Query: 5 LGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVY 64
L +L+ + L+ L+ RFVVEKNSL VTSPE IKG ++ AIGNFG+PQYGG++ GTVVY
Sbjct: 8 LPWLLLLTLLVSPLNDARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVY 67
Query: 65 PKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKT 124
PK NQK+CK F + +SFKS+PG LPTFLLVDRGDC+F LK WNAQK GA+A+LVAD+
Sbjct: 68 PKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVD 127
Query: 125 EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHP 184
EPLITMDTPEE+ + A+Y++NITIPSAL++K G+ +KK++SGG+MVN+NLDW EA+PHP
Sbjct: 128 EPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHP 187
Query: 185 DERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFIL 244
D+RVEYE WTNSNDECG KC+ ++FVK+FKGAAQILE+ G+TQF PHYITWYCP AF L
Sbjct: 188 DDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFRPHYITWYCPHAFTL 247
Query: 245 SKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVT 304
S+QCKSQCIN GRYCAPDPEQDFS GYDGKDVVV+NLRQ C +KVANE+ KPW+WWDYVT
Sbjct: 248 SRQCKSQCINKGRYCAPDPEQDFSSGYDGKDVVVENLRQLCVYKVANETGKPWVWWDYVT 307
Query: 305 DFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGS 364
DF IRCPMKEKKY KECA+ VIKSLG+D KK+D+C+GDP+AD+DN VLK EQDAQ+GKGS
Sbjct: 308 DFQIRCPMKEKKYNKECADSVIKSLGIDSKKLDKCMGDPDADLDNPVLKEEQDAQVGKGS 367
Query: 365 RGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDVD--EC-EEKLAC 421
RGDVTILPTLV+NNRQYRGKL+K AVLKA+C+GF+ETTEPAICLS DV+ EC + C
Sbjct: 368 RGDVTILPTLVVNNRQYRGKLEKSAVLKALCSGFEETTEPAICLSTDVESNECLDNNGGC 427
Query: 422 -QCPECK---CKDTWGSYECSC 439
Q CKDT+ C C
Sbjct: 428 WQDKSANITACKDTFRGRVCEC 449
Score = 392 (143.0 bits), Expect = 6.1e-36, P = 6.1e-36
Identities = 74/131 (56%), Positives = 95/131 (72%)
Query: 385 LDKGAVLKAICA-GFQ-ETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSG 442
+DK +V K C GF+ + T+ C ED++EC+EK ACQCPEC CK+TWGSYECSC
Sbjct: 494 VDKDSV-KCECPPGFKGDGTKK--C--EDINECKEKKACQCPECSCKNTWGSYECSCSGD 548
Query: 443 LLYMQEHDTCISKD-VRSEASWGFVWMVILGLAATGVAGYAFYKYRIRRYMDSEIRAIMA 501
LLY+++HDTCISK + ++W VW+++L L Y YKYR+R+YMDSEIRAIMA
Sbjct: 549 LLYIRDHDTCISKTGAQVRSAWAAVWLIMLSLGLAAAGAYLVYKYRLRQYMDSEIRAIMA 608
Query: 502 QYMPLDSQAEV 512
QYMPLDSQ E+
Sbjct: 609 QYMPLDSQPEI 619
>TAIR|locus:2015726 [details] [associations]
symbol:VSR6 "VACUOLAR SORTING RECEPTOR 6" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0005887 "integral to plasma membrane" evidence=ISS] [GO:0006623
"protein targeting to vacuole" evidence=ISS;TAS] [GO:0017119 "Golgi
transport complex" evidence=IPI] [GO:0009627 "systemic acquired
resistance" evidence=RCA] [GO:0009697 "salicylic acid biosynthetic
process" evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0009749 "response to glucose stimulus"
evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] [GO:0034976 "response to endoplasmic reticulum
stress" evidence=RCA] InterPro:IPR018097 PROSITE:PS50026
InterPro:IPR003137 Pfam:PF02225 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000139 GO:GO:0031902 GO:GO:0015031
GO:GO:0005509 PROSITE:PS00022 PROSITE:PS01186 PROSITE:PS00010
GO:GO:0030665 InterPro:IPR026823 Pfam:PF12662 EMBL:AC000107
HOGENOM:HOG000241019 IPI:IPI00530145 PIR:G86434 RefSeq:NP_174375.1
UniGene:At.51844 ProteinModelPortal:Q9FYH7 SMR:Q9FYH7 STRING:Q9FYH7
PaxDb:Q9FYH7 PRIDE:Q9FYH7 GeneID:839974 KEGG:ath:AT1G30900
TAIR:At1g30900 eggNOG:NOG295222 InParanoid:Q9FYH7 OMA:CMGDPEA
ArrayExpress:Q9FYH7 Genevestigator:Q9FYH7 GermOnline:AT1G30900
Uniprot:Q9FYH7
Length = 631
Score = 1395 (496.1 bits), Expect = 9.6e-174, Sum P(2) = 9.6e-174
Identities = 258/460 (56%), Positives = 341/460 (74%)
Query: 5 LGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVY 64
L + + ++ G+ FGRF+VEK+S+ + +P ++ ++ AI NFGVP YGG +IG+VVY
Sbjct: 10 LALFLALTMVVNGV-FGRFIVEKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVY 68
Query: 65 PKANQKACKGFDEVDLSFKSR-PGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123
A Q A G D D +FK + P PT L++DRG+CYF LK WN Q+ G AA+LVAD+
Sbjct: 69 --AGQGAY-GCDSFDKTFKPKFPR--PTILIIDRGECYFALKVWNGQQSGVAAVLVADNV 123
Query: 124 TEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPH 183
EPLITMD+PEE ++++ + IPSALI S +++K++L GE V + +DW+E+LPH
Sbjct: 124 DEPLITMDSPEESKEADDFIEKLNIPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPH 183
Query: 184 PDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFI 243
PDERVEYE WTN+NDECG +C+ Q++FVKNFKG AQILE+ GY+ FTPHYITW+CP+ ++
Sbjct: 184 PDERVEYELWTNTNDECGARCDEQMNFVKNFKGHAQILEKGGYSLFTPHYITWFCPKDYV 243
Query: 244 LSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYV 303
S QCKSQCIN GRYCAPDPEQDF GYDGKD+V +NLRQ C KVA E+ + W+WWDYV
Sbjct: 244 SSNQCKSQCINQGRYCAPDPEQDFGDGYDGKDIVFENLRQLCVHKVAKENNRSWVWWDYV 303
Query: 304 TDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKG 363
TDF IRC MKEKKY+KECAE+V++SLG+ L K+ +C+GDP+A+V+N+VLK EQ Q+G+G
Sbjct: 304 TDFHIRCSMKEKKYSKECAERVVESLGLPLDKIKKCIGDPDANVENEVLKAEQALQVGQG 363
Query: 364 SRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDVD--ECEEKLAC 421
RGDVTILPTL++NN QYRGKL++ AVLKAIC+GF+E TEP ICLS D++ EC E
Sbjct: 364 DRGDVTILPTLIVNNAQYRGKLERNAVLKAICSGFKERTEPGICLSGDIETNECLEANG- 422
Query: 422 QCPECK------CKDTWGSYECSCG--SGLLYMQE-HDTC 452
C E K CKDT+ C C +G+ Y + + +C
Sbjct: 423 GCWEDKKSNVTACKDTFRGRVCECPVVNGVQYKGDGYTSC 462
Score = 315 (115.9 bits), Expect = 9.6e-174, Sum P(2) = 9.6e-174
Identities = 54/100 (54%), Positives = 70/100 (70%)
Query: 410 EDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKDVRSEASWGFVWMV 469
ED+DEC+E+ ACQC C CK+ WG +EC C LYM+E DTCI + S W +++
Sbjct: 512 EDIDECKEQSACQCDGCNCKNKWGGFECKCSGNRLYMKEQDTCIERS-GSRIGWFPTFVI 570
Query: 470 ILGLAATGVAGYAFYKYRIRRYMDSEIRAIMAQYMPLDSQ 509
+ +A+ V GY FYKYR+R YMDSEI AIM+QYMPL+SQ
Sbjct: 571 LAAVASICVGGYVFYKYRLRSYMDSEIMAIMSQYMPLESQ 610
>TAIR|locus:2044782 [details] [associations]
symbol:VSR5 "VACUOLAR SORTING RECEPTOR 5" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0005887 "integral to plasma membrane" evidence=ISS] [GO:0006623
"protein targeting to vacuole" evidence=ISS;TAS] [GO:0017119 "Golgi
transport complex" evidence=IPI] [GO:0009627 "systemic acquired
resistance" evidence=RCA] [GO:0009697 "salicylic acid biosynthetic
process" evidence=RCA] InterPro:IPR018097 PROSITE:PS01187
PROSITE:PS50026 InterPro:IPR003137 Pfam:PF02225 GO:GO:0016021
GO:GO:0000139 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0031902
GO:GO:0015031 GO:GO:0005509 PROSITE:PS00022 PROSITE:PS01186
PROSITE:PS00010 GO:GO:0030665 EMBL:AC004238 eggNOG:NOG241162
HOGENOM:HOG000241019 ProtClustDB:CLSN2682336 EMBL:BT004565
IPI:IPI00528078 PIR:T00476 RefSeq:NP_181040.1 UniGene:At.37737
ProteinModelPortal:O64758 SMR:O64758 EnsemblPlants:AT2G34940.1
GeneID:818059 KEGG:ath:AT2G34940 TAIR:At2g34940 InParanoid:O64758
OMA:RTEPSIC PhylomeDB:O64758 Genevestigator:O64758
GermOnline:AT2G34940 Uniprot:O64758
Length = 618
Score = 1286 (457.8 bits), Expect = 5.9e-161, Sum P(2) = 5.9e-161
Identities = 239/430 (55%), Positives = 315/430 (73%)
Query: 17 GLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFD 76
G S RF VEK+SL V + ++ ++ AI NFG+P+YGG +IG+VVY + C F+
Sbjct: 23 GFS-SRFFVEKSSLTVLNSWEMGAKHDAAIANFGLPKYGGFMIGSVVYAGQDAYGCNSFN 81
Query: 77 EVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEE 136
+ + KS P P LL+DRG C F LK WN Q+ GAAA+L+AD+ EPLITMDTP++E
Sbjct: 82 KT-FNTKS-P--YPKILLIDRGVCNFALKIWNGQQSGAAAVLLADNIVEPLITMDTPQDE 137
Query: 137 NADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNS 196
D +++ + IPSALI +S GDS+KK+L GE V + +DW+E++P+PDERVEYE W N+
Sbjct: 138 --DPDFIDKVKIPSALILRSFGDSLKKALKRGEEVILKMDWSESIPNPDERVEYELWANT 195
Query: 197 NDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHG 256
NDECG C+ QIDF+KNFKG AQILE+ GYT F PHYI+W CP+ +LSKQC++QCIN G
Sbjct: 196 NDECGVHCDKQIDFIKNFKGMAQILEKGGYTLFRPHYISWVCPKELLLSKQCRTQCINQG 255
Query: 257 RYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKK 316
RYCA D +Q+F GY+GKDVV +NLRQ C KVA E W+WWDYVTDF IRC MKEKK
Sbjct: 256 RYCALDTKQEFEDGYNGKDVVYENLRQLCVHKVAKEKNTSWVWWDYVTDFNIRCSMKEKK 315
Query: 317 YTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVI 376
Y++ECAE +++SLG+ L+K+ +C+GDP+ADV+N+VLK E+ Q+G+ +RG VTI PTL+I
Sbjct: 316 YSRECAETIVESLGLSLEKIKKCIGDPDADVENEVLKAEEAFQLGQENRGIVTIFPTLMI 375
Query: 377 NNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDVD--ECE-EKLAC----QCPECKCK 429
NN QYRGKL++ AVLKAIC+GF+E TEP+ICL+ D++ EC E C + CK
Sbjct: 376 NNAQYRGKLERTAVLKAICSGFKERTEPSICLNSDIETNECLIENGGCWQDKRSNVTACK 435
Query: 430 DTWGSYECSC 439
DT+ C C
Sbjct: 436 DTFRGRVCEC 445
Score = 303 (111.7 bits), Expect = 5.9e-161, Sum P(2) = 5.9e-161
Identities = 51/101 (50%), Positives = 70/101 (69%)
Query: 410 EDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKDVRSEASWGFVWMV 469
ED+DEC+EK AC+C CKCK+ WG YEC C + +YM+E DTCI + S + F +V
Sbjct: 511 EDIDECKEKSACKCDGCKCKNNWGGYECKCSNNSIYMKEEDTCIERRSGSRSRGLFTIVV 570
Query: 470 ILGLAATGVAGYAFYKYRIRRYMDSEIRAIMAQYMPLDSQA 510
+ +A + Y FYKY ++ YMDSEI +IM+QY+PLDSQ+
Sbjct: 571 LTAIAGISLGAYIFYKYHLQSYMDSEIVSIMSQYIPLDSQS 611
>TIGR_CMR|SO_3800 [details] [associations]
symbol:SO_3800 "serine protease, subtilase family"
species:211586 "Shewanella oneidensis MR-1" [GO:0006508
"proteolysis" evidence=ISS] InterPro:IPR000209 InterPro:IPR002126
Pfam:PF00082 InterPro:IPR003137 Prosite:PS00138 Pfam:PF02225
GO:GO:0016020 GO:GO:0006508 GO:GO:0005509 GO:GO:0004252
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.40.50.200
InterPro:IPR023828 InterPro:IPR015500 PANTHER:PTHR10795
PRINTS:PR00723 SUPFAM:SSF52743 PROSITE:PS00136 GO:GO:0007156
InterPro:IPR023827 Gene3D:2.60.40.60 HSSP:Q45670 InterPro:IPR020008
TIGRFAMs:TIGR03501 RefSeq:NP_719336.1 ProteinModelPortal:Q8EAU2
GeneID:1171444 KEGG:son:SO_3800 PATRIC:23527274
HOGENOM:HOG000000439 OMA:VGAMTHP ProtClustDB:CLSK907345
Uniprot:Q8EAU2
Length = 1215
Score = 144 (55.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 59 IGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAIL 118
+ +VYP AN+ C + E DL+ K+ +L+DRG C F +K NAQ GA+ ++
Sbjct: 382 VAPIVYPAANKNGCTAYTE-DLTGKT--------VLIDRGTCGFVVKVLNAQLKGASFVI 432
Query: 119 VADDKTEP-LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEM 170
VA++ M +++ ITIPS ++SK GD+IK +L+ G++
Sbjct: 433 VANNAANAGAFVMGGTDDK---------ITIPSVMVSKEDGDAIKTALASGDV 476
>TAIR|locus:2198733 [details] [associations]
symbol:SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5"
species:3702 "Arabidopsis thaliana" [GO:0004190 "aspartic-type
endopeptidase activity" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0006508 "proteolysis" evidence=ISS] [GO:0008233
"peptidase activity" evidence=ISS] [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR006639 InterPro:IPR007369
Pfam:PF04258 SMART:SM00730 InterPro:IPR003137 Pfam:PF02225
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006508
GO:GO:0010008 GO:GO:0004190 EMBL:AC009999 PANTHER:PTHR12174
HOGENOM:HOG000239626 EMBL:AB330675 IPI:IPI00521764 PIR:H86192
RefSeq:NP_172073.2 UniGene:At.51497 ProteinModelPortal:Q9MA44
MEROPS:A22.A04 PRIDE:Q9MA44 EnsemblPlants:AT1G05820.1 GeneID:837092
KEGG:ath:AT1G05820 TAIR:At1g05820 InParanoid:Q9MA44 OMA:DEQYDEL
PhylomeDB:Q9MA44 ProtClustDB:CLSN2925424 Genevestigator:Q9MA44
Uniprot:Q9MA44
Length = 536
Score = 130 (50.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 37/100 (37%), Positives = 57/100 (57%)
Query: 97 RGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKS 156
RG+C FT+KA AQ GGAAA+++ +DK E L M E++ + N++IP +I+ S
Sbjct: 109 RGECAFTVKAQVAQAGGAAALVLINDKEE-LDEMVCGEKDTS-----LNVSIPILMITTS 162
Query: 157 LGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNS 196
GD++KKS+ + V + L + P D V + W S
Sbjct: 163 SGDALKKSIMQNKKVELLL-YAPKSPIVDYAVVF-LWLMS 200
>UNIPROTKB|E2QZ01 [details] [associations]
symbol:RNF13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
InterPro:IPR003137 Pfam:PF02225 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 Ensembl:ENSCAFT00000013305 Uniprot:E2QZ01
Length = 381
Score = 115 (45.5 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 48/153 (31%), Positives = 74/153 (48%)
Query: 25 VEKNSLKVTSPEKIKGVYECAIGNFG--VPQYGGTLIGTVVYPKANQKACKGFDEVDLSF 82
VE + L V S E ++ FG +P G L G ++ K + AC+ V
Sbjct: 32 VEADILAV-SIENASQTFDDLPARFGYRLPAEG--LKGFLINSKP-ENACEPI--VPPPL 85
Query: 83 KSRPGGLPTFL-LVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAE 141
K G TF+ L+ R DC F +K NAQ+ G A +V + ++ LI+M + N D +
Sbjct: 86 KDNSSG--TFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGS----N-DID 138
Query: 142 YLQNITIPSALISKSLGDSIKKSLS---GGEMV 171
L+ I IPS I +S +S+K + GG ++
Sbjct: 139 VLKKIDIPSVFIGESSANSLKDEFTYEKGGHII 171
Score = 54 (24.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 378 NRQYRGKLDKGAVLKAICAGFQETTEP---AICLSEDVDECEEK-LACQ-CPECKCKDTW 432
+R R +L K + K F++ E AICL E D + + L C CKC D W
Sbjct: 211 HRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 270
>RGD|1594062 [details] [associations]
symbol:Rnf13 "ring finger protein 13" species:10116 "Rattus
norvegicus" [GO:0000139 "Golgi membrane" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO;ISS] [GO:0005637
"nuclear inner membrane" evidence=IEA] [GO:0005765 "lysosomal
membrane" evidence=ISO;ISS] [GO:0005789 "endoplasmic reticulum
membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0031902 "late endosome membrane" evidence=ISO;ISS] [GO:0051865
"protein autoubiquitination" evidence=ISO;ISS] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143
InterPro:IPR003137 RGD:1594062 Pfam:PF02225 Prosite:PS00518
GO:GO:0016021 GO:GO:0000139 GO:GO:0031902 GO:GO:0005765
GO:GO:0005789 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 HSSP:Q9LRB7 GO:GO:0004842 GO:GO:0051865
GO:GO:0005637 HOVERGEN:HBG063762 CTD:11342 KO:K15692 EMBL:BC081881
IPI:IPI00471874 RefSeq:NP_001102914.1 UniGene:Rn.17153
ProteinModelPortal:Q66HG0 GeneID:681578 KEGG:rno:681578
UCSC:RGD:1594062 NextBio:721179 Genevestigator:Q66HG0
Uniprot:Q66HG0
Length = 380
Score = 112 (44.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 44/142 (30%), Positives = 68/142 (47%)
Query: 36 EKIKGVYECAIGNFG--VPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFL 93
E +E FG +P G L G ++ K + AC+ V K G TF+
Sbjct: 42 ENASQTFEDLPARFGYRLPAEG--LKGFLINSKP-ENACEPI--VPPPLKDNSSG--TFI 94
Query: 94 -LVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSAL 152
L+ R DC F +K NAQ+ G A +V + ++ LI+M + N D + L+ I IPS
Sbjct: 95 VLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGS----N-DIDILKKIDIPSVF 149
Query: 153 ISKSLGDSIKKSLS---GGEMV 171
I +S +S+K + GG ++
Sbjct: 150 IGESSANSLKDEFTYEKGGHVI 171
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 378 NRQYRGKLDKGAVLKAICAGFQETTEP---AICLSEDVDECEEK-LACQ-CPECKCKDTW 432
+R R +L K + K F++ E AICL E D + + L C CKC D W
Sbjct: 211 HRNRRNRLRKDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPW 270
>UNIPROTKB|O43567 [details] [associations]
symbol:RNF13 "E3 ubiquitin-protein ligase RNF13"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0000139 "Golgi membrane" evidence=IEA] [GO:0005637 "nuclear
inner membrane" evidence=IEA] [GO:0005789 "endoplasmic reticulum
membrane" evidence=IEA] [GO:0051865 "protein autoubiquitination"
evidence=ISS] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005765 "lysosomal membrane" evidence=ISS]
[GO:0031902 "late endosome membrane" evidence=ISS]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
UniPathway:UPA00143 InterPro:IPR003137 Pfam:PF02225 Prosite:PS00518
GO:GO:0016021 GO:GO:0000139 GO:GO:0031902 GO:GO:0005765
GO:GO:0005789 GO:GO:0046872 EMBL:CH471052 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5540 GO:GO:0004842
GO:GO:0051865 GO:GO:0005637 HOGENOM:HOG000234362 HOVERGEN:HBG063762
CTD:11342 KO:K15692 OMA:MGSNDID OrthoDB:EOG41NTMB EMBL:AF037204
EMBL:AF070558 EMBL:AK313304 EMBL:AK090638 EMBL:CR456804
EMBL:AC069216 EMBL:AC117395 EMBL:BC009803 EMBL:BC009781
IPI:IPI00151036 RefSeq:NP_009213.1 RefSeq:NP_899237.1
UniGene:Hs.12333 ProteinModelPortal:O43567 SMR:O43567 IntAct:O43567
STRING:O43567 PhosphoSite:O43567 PRIDE:O43567 DNASU:11342
Ensembl:ENST00000344229 Ensembl:ENST00000392894 GeneID:11342
KEGG:hsa:11342 UCSC:uc003exn.4 GeneCards:GC03P149531
HGNC:HGNC:10057 HPA:HPA008709 MIM:609247 neXtProt:NX_O43567
PharmGKB:PA34422 InParanoid:O43567 ChiTaRS:RNF13 GenomeRNAi:11342
NextBio:43096 ArrayExpress:O43567 Bgee:O43567 CleanEx:HS_RNF13
Genevestigator:O43567 GermOnline:ENSG00000082996 Uniprot:O43567
Length = 381
Score = 112 (44.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 41/127 (32%), Positives = 64/127 (50%)
Query: 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFL-LVDRGDCYFTLKAW 107
+ +P G L G ++ K + AC+ V K G TF+ L+ R DC F +K
Sbjct: 57 YRLPAEG--LKGFLINSKP-ENACEPI--VPPPVKDNSSG--TFIVLIRRLDCNFDIKVL 109
Query: 108 NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS- 166
NAQ+ G A +V + ++ LI+M + N D E L+ I IPS I +S +S+K +
Sbjct: 110 NAQRAGYKAAIVHNVDSDDLISMGS----N-DIEVLKKIDIPSVFIGESSANSLKDEFTY 164
Query: 167 --GGEMV 171
GG ++
Sbjct: 165 EKGGHLI 171
Score = 54 (24.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 378 NRQYRGKLDKGAVLKAICAGFQETTEP---AICLSEDVDECEEK-LACQ-CPECKCKDTW 432
+R R +L K + K F++ E AICL E D + + L C CKC D W
Sbjct: 211 HRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 270
>UNIPROTKB|Q5RCV8 [details] [associations]
symbol:RNF13 "E3 ubiquitin-protein ligase RNF13"
species:9601 "Pongo abelii" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISS] [GO:0005765 "lysosomal membrane"
evidence=ISS] [GO:0031902 "late endosome membrane" evidence=ISS]
[GO:0051865 "protein autoubiquitination" evidence=ISS]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
InterPro:IPR003137 Pfam:PF02225 Prosite:PS00518 GO:GO:0016021
GO:GO:0000139 GO:GO:0031902 GO:GO:0005765 GO:GO:0005789
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
HSSP:Q9LRB7 GO:GO:0004842 GO:GO:0051865 GO:GO:0005637
HOVERGEN:HBG063762 CTD:11342 KO:K15692 EMBL:CR858160
RefSeq:NP_001125196.1 UniGene:Pab.18281 ProteinModelPortal:Q5RCV8
SMR:Q5RCV8 PRIDE:Q5RCV8 GeneID:100172087 KEGG:pon:100172087
Uniprot:Q5RCV8
Length = 381
Score = 112 (44.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 41/127 (32%), Positives = 64/127 (50%)
Query: 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFL-LVDRGDCYFTLKAW 107
+ +P G L G ++ K + AC+ V K G TF+ L+ R DC F +K
Sbjct: 57 YRLPAEG--LKGFLINSKP-ENACEPI--VPPPVKDNSSG--TFIVLIRRLDCNFDIKVL 109
Query: 108 NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS- 166
NAQ+ G A +V + ++ LI+M + N D E L+ I IPS I +S +S+K +
Sbjct: 110 NAQRAGYKAAIVHNVDSDDLISMGS----N-DIEVLKKIDIPSVFIGESSANSLKDEFTY 164
Query: 167 --GGEMV 171
GG ++
Sbjct: 165 EKGGHLI 171
Score = 54 (24.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 378 NRQYRGKLDKGAVLKAICAGFQETTEP---AICLSEDVDECEEK-LACQ-CPECKCKDTW 432
+R R +L K + K F++ E AICL E D + + L C CKC D W
Sbjct: 211 HRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 270
>MGI|MGI:1346341 [details] [associations]
symbol:Rnf13 "ring finger protein 13" species:10090 "Mus
musculus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005764 "lysosome" evidence=IEA]
[GO:0005765 "lysosomal membrane" evidence=IDA] [GO:0005768
"endosome" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051865 "protein
autoubiquitination" evidence=IDA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143
InterPro:IPR003137 MGI:MGI:1346341 Pfam:PF02225 Prosite:PS00518
GO:GO:0016021 GO:GO:0005829 GO:GO:0031902 GO:GO:0005765
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0051865 GO:GO:0005637 EMBL:CH466530
GeneTree:ENSGT00700000104226 HOGENOM:HOG000234362
HOVERGEN:HBG063762 CTD:11342 KO:K15692 OMA:MGSNDID
OrthoDB:EOG41NTMB EMBL:AF037205 EMBL:AF037206 EMBL:AK158046
EMBL:BC058182 IPI:IPI00119961 IPI:IPI00420831 RefSeq:NP_001106884.1
RefSeq:NP_036013.1 UniGene:Mm.274360 ProteinModelPortal:O54965
SMR:O54965 PhosphoSite:O54965 PRIDE:O54965
Ensembl:ENSMUST00000041826 GeneID:24017 KEGG:mmu:24017
eggNOG:NOG260066 InParanoid:Q6PEA8 NextBio:303955 Bgee:O54965
CleanEx:MM_RNF13 Genevestigator:O54965
GermOnline:ENSMUSG00000036503 Uniprot:O54965
Length = 381
Score = 111 (44.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 44/142 (30%), Positives = 68/142 (47%)
Query: 36 EKIKGVYECAIGNFG--VPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFL 93
E +E FG +P G L G ++ K + AC+ V K G TF+
Sbjct: 42 ENASQTFEDLPARFGYRLPAEG--LKGFLINSKP-ENACEPI--VPPPLKDNSSG--TFI 94
Query: 94 -LVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSAL 152
L+ R DC F +K NAQ+ G A +V + ++ LI+M + N D + L+ I IPS
Sbjct: 95 VLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGS----N-DIDTLKKIDIPSVF 149
Query: 153 ISKSLGDSIKKSLS---GGEMV 171
I +S +S+K + GG ++
Sbjct: 150 IGESSANSLKDEFTYEKGGHII 171
Score = 55 (24.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 378 NRQYRGKLDKGAVLKAICAGFQETTEP---AICLSEDVDECEEK-LACQ-CPECKCKDTW 432
+R R +L K + K F++ E AICL E D + + L C CKC D W
Sbjct: 211 HRNRRNRLRKDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPW 270
>TAIR|locus:2040971 [details] [associations]
symbol:SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3"
species:3702 "Arabidopsis thaliana" [GO:0004190 "aspartic-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0008233 "peptidase activity" evidence=ISS]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0005768
"endosome" evidence=TAS] InterPro:IPR006639 InterPro:IPR007369
Pfam:PF04258 SMART:SM00730 InterPro:IPR003137 Pfam:PF02225
GO:GO:0016021 GO:GO:0005774 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005768 GO:GO:0006508 GO:GO:0010008 GO:GO:0004190
EMBL:AC004450 PANTHER:PTHR12174 EMBL:AC006224 eggNOG:NOG250196
EMBL:BT023438 EMBL:AK229438 IPI:IPI00520230 IPI:IPI00619882
PIR:F84861 RefSeq:NP_850383.2 UniGene:At.36934
ProteinModelPortal:Q4V3B8 MEROPS:A22.A06 PaxDb:Q4V3B8 PRIDE:Q4V3B8
EnsemblPlants:AT2G43070.1 GeneID:818909 KEGG:ath:AT2G43070
TAIR:At2g43070 HOGENOM:HOG000239626 InParanoid:Q4V3B8 OMA:SWFVWVL
PhylomeDB:Q4V3B8 ProtClustDB:CLSN2915153 Genevestigator:Q4V3B8
Uniprot:Q4V3B8
Length = 540
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 97 RGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKS 156
RG+C FT KA +A+ GA+A+LV +DK E L M E++ + N++IP +ISKS
Sbjct: 113 RGNCAFTEKAKHAEAAGASALLVINDK-EDLDEMGCMEKDTS-----LNVSIPVLMISKS 166
Query: 157 LGDSIKKSLSGGEMVNMNL 175
GD++ KS+ + V + L
Sbjct: 167 SGDALNKSMVDNKNVELLL 185
>UNIPROTKB|F6XCX3 [details] [associations]
symbol:RNF13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
InterPro:IPR003137 Pfam:PF02225 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00700000104226
CTD:11342 KO:K15692 OMA:MGSNDID Ensembl:ENSCAFT00000013305
EMBL:AAEX03013674 EMBL:AAEX03013676 EMBL:AAEX03013675
RefSeq:XP_534303.1 ProteinModelPortal:F6XCX3 GeneID:477109
KEGG:cfa:477109 Uniprot:F6XCX3
Length = 381
Score = 109 (43.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 40/127 (31%), Positives = 64/127 (50%)
Query: 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFL-LVDRGDCYFTLKAW 107
+ +P G L G ++ K + AC+ V K G TF+ L+ R DC F +K
Sbjct: 57 YRLPAEG--LKGFLINSKP-ENACEPI--VPPPLKDNSSG--TFIVLIRRLDCNFDIKVL 109
Query: 108 NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS- 166
NAQ+ G A +V + ++ LI+M + N D + L+ I IPS I +S +S+K +
Sbjct: 110 NAQRAGYKAAIVHNVDSDDLISMGS----N-DIDVLKKIDIPSVFIGESSANSLKDEFTY 164
Query: 167 --GGEMV 171
GG ++
Sbjct: 165 EKGGHII 171
Score = 54 (24.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 378 NRQYRGKLDKGAVLKAICAGFQETTEP---AICLSEDVDECEEK-LACQ-CPECKCKDTW 432
+R R +L K + K F++ E AICL E D + + L C CKC D W
Sbjct: 211 HRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 270
>UNIPROTKB|C9J8T4 [details] [associations]
symbol:RNF13 "E3 ubiquitin-protein ligase RNF13"
species:9606 "Homo sapiens" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0005765 "lysosomal membrane"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IEA]
[GO:0051865 "protein autoubiquitination" evidence=IEA]
InterPro:IPR003137 Pfam:PF02225 GO:GO:0031902 GO:GO:0005765
GO:GO:0004842 GO:GO:0051865 HOGENOM:HOG000234362 EMBL:AC069216
EMBL:AC117395 HGNC:HGNC:10057 ChiTaRS:RNF13 IPI:IPI00946736
ProteinModelPortal:C9J8T4 SMR:C9J8T4 STRING:C9J8T4
Ensembl:ENST00000466795 ArrayExpress:C9J8T4 Bgee:C9J8T4
Uniprot:C9J8T4
Length = 163
Score = 108 (43.1 bits), Expect = 0.00047, P = 0.00047
Identities = 39/115 (33%), Positives = 59/115 (51%)
Query: 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFL-LVDRGDCYFTLKAW 107
+ +P G L G ++ K + AC+ V K G TF+ L+ R DC F +K
Sbjct: 57 YRLPAEG--LKGFLINSKP-ENACEPI--VPPPVKDNSSG--TFIVLIRRLDCNFDIKVL 109
Query: 108 NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIK 162
NAQ+ G A +V + ++ LI+M + N D E L+ I IPS I +S +S+K
Sbjct: 110 NAQRAGYKAAIVHNVDSDDLISMGS----N-DIEVLKKIDIPSVFIGESSANSLK 159
>UNIPROTKB|C9JYN7 [details] [associations]
symbol:RNF13 "E3 ubiquitin-protein ligase RNF13"
species:9606 "Homo sapiens" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0005765 "lysosomal membrane"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IEA]
[GO:0051865 "protein autoubiquitination" evidence=IEA]
InterPro:IPR003137 Pfam:PF02225 GO:GO:0031902 GO:GO:0005765
GO:GO:0004842 GO:GO:0051865 HOGENOM:HOG000234362 EMBL:AC069216
EMBL:AC117395 HGNC:HGNC:10057 ChiTaRS:RNF13 IPI:IPI00947440
ProteinModelPortal:C9JYN7 SMR:C9JYN7 Ensembl:ENST00000459632
ArrayExpress:C9JYN7 Bgee:C9JYN7 Uniprot:C9JYN7
Length = 165
Score = 108 (43.1 bits), Expect = 0.00053, P = 0.00053
Identities = 39/115 (33%), Positives = 59/115 (51%)
Query: 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFL-LVDRGDCYFTLKAW 107
+ +P G L G ++ K + AC+ V K G TF+ L+ R DC F +K
Sbjct: 57 YRLPAEG--LKGFLINSKP-ENACEPI--VPPPVKDNSSG--TFIVLIRRLDCNFDIKVL 109
Query: 108 NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIK 162
NAQ+ G A +V + ++ LI+M + N D E L+ I IPS I +S +S+K
Sbjct: 110 NAQRAGYKAAIVHNVDSDDLISMGS----N-DIEVLKKIDIPSVFIGESSANSLK 159
>UNIPROTKB|I3LG86 [details] [associations]
symbol:RNF13 "Ring finger protein 13" species:9823 "Sus
scrofa" [GO:0051865 "protein autoubiquitination" evidence=IEA]
[GO:0031902 "late endosome membrane" evidence=IEA] [GO:0005765
"lysosomal membrane" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 InterPro:IPR003137 Pfam:PF02225 GO:GO:0031902
GO:GO:0005765 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0051865
GeneTree:ENSGT00700000104226 CTD:11342 KO:K15692 OMA:MGSNDID
EMBL:FP312790 EMBL:CU915458 EMBL:GACC01000242 RefSeq:XP_003358656.2
Ensembl:ENSSSCT00000022374 GeneID:100621829 KEGG:ssc:100621829
Uniprot:I3LG86
Length = 381
Score = 107 (42.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 41/127 (32%), Positives = 63/127 (49%)
Query: 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFL-LVDRGDCYFTLKAW 107
+ +P G L G ++ K + AC+ V K G TF+ L+ R DC F K
Sbjct: 57 YRLPAEG--LKGFLINSKP-ENACEPI--VPPPLKDNSSG--TFIVLIRRLDCNFDEKVL 109
Query: 108 NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS- 166
NAQ+ G A +V + ++ LI+M + N D E L+ I IPS I +S +S+K +
Sbjct: 110 NAQRAGYKAAIVHNVDSDDLISMGS----N-DIEVLKKIDIPSVFIGESSANSLKDEFTY 164
Query: 167 --GGEMV 171
GG ++
Sbjct: 165 EKGGHII 171
Score = 54 (24.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 378 NRQYRGKLDKGAVLKAICAGFQETTEP---AICLSEDVDECEEK-LACQ-CPECKCKDTW 432
+R R +L K + K F++ E AICL E D + + L C CKC D W
Sbjct: 211 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 270
>UNIPROTKB|F1NUJ3 [details] [associations]
symbol:RNF13 "E3 ubiquitin-protein ligase RNF13"
species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005765 "lysosomal membrane" evidence=IEA]
[GO:0031902 "late endosome membrane" evidence=IEA] [GO:0051865
"protein autoubiquitination" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 InterPro:IPR003137
Pfam:PF02225 GO:GO:0031902 GO:GO:0005765 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0051865 GeneTree:ENSGT00700000104226 EMBL:AADN02021136
EMBL:AADN02021135 IPI:IPI00820464 Ensembl:ENSGALT00000038908
Uniprot:F1NUJ3
Length = 272
Score = 102 (41.0 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 93 LLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSAL 152
+L+ R +C F +K NAQ+ G A +V + ++ LI+M + N D E L+ I IPS
Sbjct: 53 VLIRRLECNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGS----N-DIEILKKIDIPSVF 107
Query: 153 ISKSLGDSIKKSLS---GGEMV 171
I ++ +S+K+ + GG +V
Sbjct: 108 IGEASANSLKEEFTYEKGGHVV 129
Score = 54 (24.1 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 378 NRQYRGKLDKGAVLKAICAGFQETTEP---AICLSEDVDECEEK-LACQ-CPECKCKDTW 432
+R R +L K + K F++ E AICL E D + + L C CKC D W
Sbjct: 169 HRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 228
>TAIR|locus:2026684 [details] [associations]
symbol:SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2"
species:3702 "Arabidopsis thaliana" [GO:0004190 "aspartic-type
endopeptidase activity" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=ISM] [GO:0006508 "proteolysis" evidence=ISS] [GO:0008233
"peptidase activity" evidence=ISS] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005768 "endosome" evidence=IDA]
InterPro:IPR006639 InterPro:IPR007369 Pfam:PF04258 SMART:SM00730
InterPro:IPR003137 Pfam:PF02225 GO:GO:0016021 EMBL:CP002684
GO:GO:0005886 GO:GO:0005768 GO:GO:0004190 PANTHER:PTHR12174
IPI:IPI00516863 RefSeq:NP_974082.1 UniGene:At.19793
ProteinModelPortal:F4I3Q0 MEROPS:A22.A05 PRIDE:F4I3Q0
EnsemblPlants:AT1G63690.2 GeneID:842673 KEGG:ath:AT1G63690
OMA:SPFCIVF PhylomeDB:F4I3Q0 Uniprot:F4I3Q0
Length = 540
Score = 118 (46.6 bits), Expect = 0.00095, P = 0.00095
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 93 LLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSAL 152
++V+RG+C FT KA NA+ GA+A+L+ +++ E + P+E + D I IP+ +
Sbjct: 108 VIVERGNCRFTAKANNAEAAGASALLIINNQKELYKMVCEPDETDLD------IQIPAVM 161
Query: 153 ISKSLGDSIKKSLSGGEMVNMNL 175
+ + G S++K L+ V+ L
Sbjct: 162 LPQDAGASLQKMLANSSKVSAQL 184
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 520 520 0.00089 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 629 (67 KB)
Total size of DFA: 354 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.29u 0.14s 45.43t Elapsed: 00:00:02
Total cpu time: 45.29u 0.14s 45.43t Elapsed: 00:00:02
Start: Tue May 21 11:14:22 2013 End: Tue May 21 11:14:24 2013