Query 010010
Match_columns 520
No_of_seqs 339 out of 1239
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 9E-22 3.1E-26 187.7 19.5 148 21-178 28-186 (194)
2 3iib_A Peptidase M28; YP_92679 99.0 8.2E-09 2.8E-13 110.1 16.1 105 55-177 103-225 (444)
3 2ek8_A Aminopeptidase; metallo 98.9 1.7E-08 5.8E-13 106.7 14.3 101 56-177 91-195 (421)
4 3fed_A Glutamate carboxypeptid 98.5 1.4E-07 5E-12 105.8 9.2 106 55-167 124-268 (707)
5 3kas_A Transferrin receptor pr 98.3 9.5E-07 3.2E-11 98.2 9.1 103 55-166 105-230 (640)
6 1apq_A Complement protease C1R 98.0 1.5E-06 5.1E-11 64.9 2.1 43 411-454 3-52 (53)
7 3i6s_A Subtilisin-like proteas 97.9 1.2E-05 4.1E-10 89.6 8.1 95 62-178 261-357 (649)
8 1lmj_A Fibrillin 1; EGF, calci 97.9 4.4E-06 1.5E-10 68.8 2.3 56 395-453 29-86 (86)
9 1y9z_A Alkaline serine proteas 97.8 5.9E-05 2E-09 80.0 9.2 77 86-174 270-355 (441)
10 1xf1_A C5A peptidase, SCP; hyd 97.6 0.00014 4.7E-09 84.2 10.4 73 87-175 278-351 (926)
11 2jkh_L Factor X light chain; p 97.3 6.1E-05 2.1E-09 56.9 1.4 42 413-456 2-43 (55)
12 1kli_L Factor VIIA; extrinsic 97.3 6.9E-05 2.4E-09 59.6 1.6 44 411-456 4-48 (69)
13 2kl7_A Fibulin-4; secreted, ca 97.2 7.6E-05 2.6E-09 59.6 0.9 27 411-438 2-29 (71)
14 1uzk_A Fibrillin-1; glycoprote 97.1 0.00021 7E-09 65.3 3.4 60 390-453 99-162 (162)
15 2w2n_E LDL receptor, low-densi 97.1 5.8E-05 2E-09 64.9 -0.4 52 395-452 54-106 (107)
16 1z6c_A Vitamin K-dependent pro 97.1 0.00022 7.5E-09 58.6 2.7 54 395-454 29-85 (87)
17 1gl4_A Nidogen-1, entactin; im 97.0 0.00026 8.9E-09 70.9 2.4 41 411-454 4-45 (285)
18 1dx5_I Thrombomodulin; serine 96.9 0.00025 8.6E-09 61.6 1.3 48 395-448 65-113 (118)
19 1uzk_A Fibrillin-1; glycoprote 96.9 0.00036 1.2E-08 63.7 2.4 42 411-454 2-43 (162)
20 3p5b_L Low density lipoprotein 96.9 0.00031 1.1E-08 73.2 2.2 56 395-456 25-81 (400)
21 1emn_A Fibrillin; extracellula 96.9 0.00036 1.2E-08 56.7 2.1 33 411-445 4-36 (82)
22 1z6c_A Vitamin K-dependent pro 96.9 0.00035 1.2E-08 57.4 2.0 42 411-453 2-43 (87)
23 2w86_A Fibrillin-1, fibrillin1 96.8 0.00045 1.5E-08 62.0 2.3 55 394-453 91-147 (147)
24 3v65_B Low-density lipoprotein 96.6 0.00053 1.8E-08 70.9 1.8 58 394-456 27-85 (386)
25 1emn_A Fibrillin; extracellula 96.6 0.0009 3.1E-08 54.3 2.3 51 395-452 30-81 (82)
26 1edm_B Factor IX; epidermal gr 96.5 0.00079 2.7E-08 46.8 1.3 32 411-444 2-33 (39)
27 1lmj_A Fibrillin 1; EGF, calci 96.4 0.0012 3.9E-08 54.1 1.9 34 411-445 2-35 (86)
28 1kig_L Factor XA; glycoprotein 96.3 0.0011 3.8E-08 49.2 1.5 30 427-456 11-40 (51)
29 1nzi_A Complement C1S componen 96.3 0.0013 4.3E-08 59.5 1.8 43 411-454 116-158 (159)
30 2bou_A EGF-like module contain 96.1 0.0022 7.4E-08 57.1 2.6 47 405-454 91-138 (143)
31 1szb_A Mannose binding lectin- 96.1 0.0014 4.9E-08 60.0 1.4 44 411-455 123-168 (170)
32 2w86_A Fibrillin-1, fibrillin1 96.1 0.0022 7.4E-08 57.5 2.3 41 411-454 3-43 (147)
33 2k2s_B Micronemal protein 6; m 96.1 0.0033 1.1E-07 48.7 3.0 43 411-455 10-57 (61)
34 3gha_A Disulfide bond formatio 95.9 0.14 4.7E-06 48.1 14.3 99 284-394 87-187 (202)
35 3v64_C Agrin; beta propeller, 95.8 0.0031 1.1E-07 64.2 2.4 42 412-456 1-42 (349)
36 3v65_B Low-density lipoprotein 95.7 0.0018 6.3E-08 66.8 0.0 42 411-454 2-43 (386)
37 1n7d_A LDL receptor, low-densi 95.6 0.0057 2E-07 68.4 3.8 55 395-455 319-374 (699)
38 1x7a_L Coagulation factor IX, 95.6 0.0049 1.7E-07 55.6 2.3 53 395-455 73-127 (146)
39 3bci_A Disulfide bond protein 95.6 0.22 7.5E-06 45.4 13.7 99 284-394 69-173 (186)
40 3m0c_C LDL receptor, low-densi 95.5 0.0034 1.1E-07 71.5 1.5 55 395-455 337-392 (791)
41 2wph_E Coagulation factor IXA 95.2 0.007 2.4E-07 46.3 1.8 30 427-456 12-42 (59)
42 2bz6_L Blood coagulation facto 95.2 0.0059 2E-07 45.6 1.3 30 427-456 12-42 (53)
43 2bou_A EGF-like module contain 95.0 0.0071 2.4E-07 53.7 1.7 41 404-446 38-79 (143)
44 2w2n_E LDL receptor, low-densi 94.9 0.014 4.9E-07 49.8 3.1 42 405-453 25-67 (107)
45 1aut_L Activated protein C; se 94.9 0.011 3.7E-07 50.8 2.3 48 407-456 48-96 (114)
46 1nfu_B Coagulation factor XA, 94.8 0.0094 3.2E-07 56.6 2.0 56 394-456 66-123 (195)
47 3gyk_A 27KDA outer membrane pr 94.8 0.77 2.6E-05 41.0 14.7 86 298-394 83-168 (175)
48 1egf_A Epidermal growth factor 94.7 0.0096 3.3E-07 44.3 1.3 34 411-444 2-38 (53)
49 3f1s_B Vitamin K-dependent pro 94.7 0.01 3.5E-07 58.7 1.8 43 411-454 1-43 (283)
50 3h5c_B Vitamin K-dependent pro 94.5 0.012 4.1E-07 59.0 2.1 54 395-454 30-84 (317)
51 2vh0_B Activated factor XA lig 94.4 0.017 5.9E-07 51.0 2.6 55 394-455 66-122 (134)
52 2vj3_A Neurogenic locus notch 94.3 0.014 4.6E-07 51.5 1.7 33 411-444 4-37 (135)
53 3p5b_L Low density lipoprotein 94.1 0.015 5.2E-07 60.3 1.8 38 413-453 1-38 (400)
54 1x7a_L Coagulation factor IX, 93.3 0.022 7.6E-07 51.2 1.2 35 406-444 44-78 (146)
55 1aut_L Activated protein C; se 93.3 0.02 6.8E-07 49.1 0.7 34 411-444 5-44 (114)
56 1dx5_I Thrombomodulin; serine 93.1 0.033 1.1E-06 48.0 1.9 32 411-446 3-35 (118)
57 2c4f_L Coagulation factor VII 93.1 0.03 1E-06 49.9 1.7 32 411-444 46-77 (142)
58 1nfu_B Coagulation factor XA, 92.5 0.023 8E-07 53.8 0.0 35 406-444 38-72 (195)
59 3u7u_G Neuregulin 1; signaling 92.4 0.044 1.5E-06 41.4 1.4 32 411-444 7-43 (55)
60 3gmf_A Protein-disulfide isome 91.7 0.089 3E-06 49.8 3.1 67 322-394 126-192 (205)
61 1yo8_A Thrombospondin-2; EGF, 91.7 0.071 2.4E-06 59.0 2.8 46 394-444 29-80 (634)
62 2vh0_B Activated factor XA lig 91.1 0.04 1.4E-06 48.6 0.0 35 406-444 38-72 (134)
63 4d90_A EGF-like repeat and dis 90.3 0.082 2.8E-06 46.5 1.3 43 395-444 84-127 (143)
64 1ijq_A LDL receptor, low-densi 90.2 0.1 3.5E-06 51.8 2.0 43 411-454 266-316 (316)
65 2imf_A HCCA isomerase, 2-hydro 89.2 0.27 9.2E-06 45.7 3.9 67 322-395 126-192 (203)
66 3hz8_A Thiol:disulfide interch 89.1 0.26 8.8E-06 45.6 3.8 65 319-390 109-174 (193)
67 2c4f_L Coagulation factor VII 88.9 0.19 6.6E-06 44.6 2.6 53 395-456 72-131 (142)
68 3fz5_A Possible 2-hydroxychrom 88.0 0.31 1.1E-05 45.4 3.6 91 298-395 107-198 (202)
69 3vta_A Cucumisin; subtilisin-l 87.7 0.6 2.1E-05 51.4 6.1 64 87-169 279-342 (621)
70 4a0p_A LRP6, LRP-6, low-densit 87.6 0.19 6.4E-06 55.5 2.0 43 411-455 264-307 (628)
71 1yo8_A Thrombospondin-2; EGF, 87.3 0.18 6E-06 55.9 1.6 37 405-444 97-138 (634)
72 4dvc_A Thiol:disulfide interch 87.3 0.28 9.6E-06 44.0 2.6 55 319-380 106-160 (184)
73 1k36_A Epiregulin; EGF-like fo 87.2 0.14 4.9E-06 36.9 0.5 34 411-444 2-37 (46)
74 3f4s_A Alpha-DSBA1, putative u 87.0 0.32 1.1E-05 46.7 3.0 83 298-386 103-190 (226)
75 2rem_A Disulfide oxidoreductas 86.8 0.37 1.3E-05 43.9 3.2 64 319-390 111-175 (193)
76 1z1y_A Ookinete surface protei 86.1 0.14 4.6E-06 47.4 -0.2 47 395-445 29-84 (186)
77 3h5c_B Vitamin K-dependent pro 86.1 0.22 7.7E-06 49.5 1.4 32 411-444 4-35 (317)
78 3h93_A Thiol:disulfide interch 85.9 0.4 1.4E-05 43.7 3.0 86 298-390 86-175 (192)
79 2vj3_A Neurogenic locus notch 85.7 0.25 8.5E-06 43.3 1.3 43 395-444 32-75 (135)
80 1z1y_A Ookinete surface protei 85.7 0.23 8E-06 45.7 1.2 54 395-450 120-175 (186)
81 3gl5_A Putative DSBA oxidoredu 84.9 0.84 2.9E-05 43.9 4.8 94 298-398 115-212 (239)
82 1tpg_A T-plasminogen activator 84.1 0.26 9E-06 40.4 0.7 37 406-444 42-80 (91)
83 2znm_A Thiol:disulfide interch 83.7 0.63 2.1E-05 42.4 3.2 63 320-389 106-170 (195)
84 2vj2_A Jagged-1; signalling, p 83.5 0.47 1.6E-05 43.3 2.2 38 405-444 125-163 (169)
85 1a3p_A Epidermal growth factor 82.6 0.5 1.7E-05 33.5 1.6 21 424-444 13-35 (45)
86 3m0c_C LDL receptor, low-densi 82.1 0.49 1.7E-05 53.7 2.1 40 411-453 311-350 (791)
87 1n7d_A LDL receptor, low-densi 82.1 0.49 1.7E-05 52.7 2.1 39 411-452 293-331 (699)
88 1hae_A Heregulin-alpha; growth 81.8 0.66 2.2E-05 35.3 2.1 31 412-444 6-41 (63)
89 3hd5_A Thiol:disulfide interch 81.4 0.87 3E-05 41.6 3.2 59 319-384 107-165 (195)
90 3s94_A LRP-6, low-density lipo 80.4 0.61 2.1E-05 51.2 2.1 41 412-454 578-618 (619)
91 3l9v_A Putative thiol-disulfid 79.8 1.8 6E-05 39.7 4.7 56 319-381 100-156 (189)
92 3l9s_A Thiol:disulfide interch 78.0 1.1 3.9E-05 41.3 2.9 57 319-382 107-163 (191)
93 2jwa_A Receptor tyrosine-prote 77.2 4 0.00014 29.3 4.8 29 459-487 9-37 (44)
94 2in3_A Hypothetical protein; D 76.9 1.9 6.4E-05 39.8 4.0 90 298-394 110-205 (216)
95 3sov_A LRP-6, low-density lipo 76.3 1.1 3.6E-05 44.8 2.3 42 413-456 268-311 (318)
96 4d90_A EGF-like repeat and dis 75.4 0.76 2.6E-05 40.1 0.8 32 411-444 51-89 (143)
97 1g1s_A P-selectin; selectin, l 74.3 0.56 1.9E-05 41.8 -0.4 24 420-444 126-149 (162)
98 3feu_A Putative lipoprotein; a 72.3 2.3 7.9E-05 38.9 3.3 66 319-392 108-177 (185)
99 3c7m_A Thiol:disulfide interch 72.2 1.6 5.5E-05 39.4 2.2 59 326-391 125-186 (195)
100 1q4g_A Prostaglandin G/H synth 70.4 1.6 5.3E-05 47.6 1.9 36 412-453 2-39 (553)
101 1un2_A DSBA, thiol-disulfide i 67.9 3.6 0.00012 38.2 3.7 55 322-383 9-63 (197)
102 1r4w_A Glutathione S-transfera 67.6 6.6 0.00023 36.8 5.5 95 298-399 113-215 (226)
103 3kzq_A Putative uncharacterize 65.8 3.5 0.00012 38.1 3.1 73 299-378 104-177 (208)
104 3dem_A Complement factor MAsp- 64.9 2 6.9E-05 41.7 1.3 28 427-454 137-164 (278)
105 2l8s_A Integrin alpha-1; trans 64.2 7.2 0.00025 29.2 3.8 25 461-485 8-32 (54)
106 1tpg_A T-plasminogen activator 63.8 1.8 6.1E-05 35.3 0.5 28 411-446 16-43 (91)
107 2knc_A Integrin alpha-IIB; tra 63.0 7.7 0.00026 29.0 3.8 26 460-485 10-35 (54)
108 2k1a_A Integrin alpha-IIB; sin 61.5 9.2 0.00032 27.1 3.8 26 460-485 8-33 (42)
109 2knc_B Integrin beta-3; transm 59.3 22 0.00076 28.5 6.3 25 463-487 11-35 (79)
110 3rpp_A Glutathione S-transfera 54.6 12 0.0004 35.5 4.7 77 319-399 135-215 (234)
111 3s94_A LRP-6, low-density lipo 54.2 5 0.00017 43.9 2.2 42 412-455 272-315 (619)
112 3nt1_A Prostaglandin-endoperox 53.3 3.7 0.00013 45.0 1.0 31 412-444 1-33 (587)
113 1z6m_A Conserved hypothetical 52.1 13 0.00046 32.7 4.4 27 367-393 146-172 (175)
114 1nql_B Epidermal growth factor 51.5 3.6 0.00012 30.3 0.3 20 425-444 17-38 (53)
115 3v64_C Agrin; beta propeller, 51.1 6.5 0.00022 39.3 2.3 28 427-455 317-344 (349)
116 3kp8_A Vkorc1/thioredoxin doma 49.9 8.7 0.0003 31.7 2.5 28 367-394 63-90 (106)
117 1g1t_A E-selectin; EGF, adhesi 49.7 2.4 8.3E-05 37.2 -1.1 19 426-444 131-149 (157)
118 1nt0_A MAsp2, mannose-binding 49.4 5.1 0.00018 39.1 1.2 27 427-453 136-162 (286)
119 2k1k_A Ephrin type-A receptor 48.9 7.5 0.00025 26.9 1.6 10 476-485 27-36 (38)
120 3gn3_A Putative protein-disulf 47.0 19 0.00064 32.8 4.6 53 321-383 115-167 (182)
121 2lx0_A Membrane fusion protein 46.8 30 0.001 22.2 4.0 25 462-487 5-29 (32)
122 1dme_A CD6 metallothionein-1; 46.6 8.2 0.00028 24.7 1.3 22 405-428 3-27 (28)
123 3asi_A Neurexin-1-alpha; beta- 39.6 8.8 0.0003 39.4 1.2 29 413-443 186-215 (410)
124 4f87_A Plycb; lysin, bacteriop 39.1 16 0.00056 27.4 2.2 21 146-166 51-71 (72)
125 1fo5_A Thioredoxin; disulfide 37.6 19 0.00065 27.0 2.6 28 366-393 52-80 (85)
126 2k9j_B Integrin beta-3; transm 37.1 50 0.0017 23.3 4.4 27 463-489 10-36 (43)
127 1nho_A Probable thioredoxin; b 35.8 20 0.00068 26.9 2.4 27 367-393 52-79 (85)
128 2ks1_B Epidermal growth factor 33.8 47 0.0016 23.7 3.8 7 481-487 31-37 (44)
129 4b2v_A S64; toxin, ICK; NMR {S 32.9 18 0.00062 23.2 1.4 15 250-265 1-15 (32)
130 3cfw_A L-selectin; EGF, cell a 32.8 12 0.00042 32.9 0.8 20 425-444 130-149 (164)
131 2knc_B Integrin beta-3; transm 32.5 72 0.0025 25.4 5.3 31 461-491 14-44 (79)
132 3ca7_A Protein spitz; argos, E 32.3 13 0.00045 26.8 0.8 21 424-444 18-42 (52)
133 3sok_A Fimbrial protein; pilus 31.3 73 0.0025 28.0 5.8 40 465-504 8-51 (151)
134 4aqb_A Mannan-binding lectin s 29.9 23 0.00078 35.5 2.4 28 427-454 137-164 (361)
135 1ilo_A Conserved hypothetical 26.1 32 0.0011 25.3 2.1 27 368-394 48-76 (77)
136 1ob1_C Major merozoite surface 26.1 29 0.00098 29.1 1.9 34 420-456 11-45 (99)
137 1oqw_A Fimbrial protein; type 25.6 1.1E+02 0.0036 26.5 5.7 15 494-509 41-55 (144)
138 3sok_A Fimbrial protein; pilus 25.4 1.3E+02 0.0043 26.4 6.2 38 466-503 6-43 (151)
139 3gv1_A Disulfide interchange p 24.7 51 0.0017 28.9 3.4 31 366-396 105-136 (147)
140 1zza_A Stannin, AG8_1; helix, 21.8 74 0.0025 25.1 3.3 27 459-485 10-36 (90)
141 3qmx_A Glutaredoxin A, glutare 21.4 1.2E+02 0.0042 24.3 4.9 49 323-384 33-81 (99)
142 1n1i_A Merozoite surface prote 21.2 38 0.0013 28.6 1.7 33 420-455 17-50 (105)
143 1rh5_B Preprotein translocase 20.9 79 0.0027 25.0 3.4 23 463-485 35-57 (74)
144 1q90_G Cytochrome B6F complex 20.6 84 0.0029 21.5 2.9 22 464-485 9-30 (37)
145 2yan_A Glutaredoxin-3; oxidore 20.5 1.3E+02 0.0043 24.1 4.9 49 322-384 38-86 (105)
146 3ipz_A Monothiol glutaredoxin- 20.3 1.2E+02 0.0041 24.7 4.7 49 322-384 39-87 (109)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.88 E-value=9e-22 Score=187.73 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=112.0
Q ss_pred eeEEEeeceEEEEc--ccc--c-cceeeeeecccCCCCCCCceEEEEeccC--CCccCCCCCCCCCcccC-CCCCCCCeE
Q 010010 21 GRFVVEKNSLKVTS--PEK--I-KGVYECAIGNFGVPQYGGTLIGTVVYPK--ANQKACKGFDEVDLSFK-SRPGGLPTF 92 (520)
Q Consensus 21 ~~fvve~~~l~V~~--P~~--l-~~~y~~~~a~FG~~~yg~~l~G~lv~~~--~~~~gC~~~~~~~~~~~-~~~~~~~~I 92 (520)
......+..+.|+. |.. . -.......|+||...+.+.++|.|+++. ++.+||++++++..+.. .....+++|
T Consensus 28 ~~~~~~~A~vn~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkI 107 (194)
T 3icu_A 28 GAEAVWTAYLNVSWRVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWL 107 (194)
T ss_dssp CSSCEEEEEEEEEEECCSSCTTCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEE
T ss_pred cceeEEEEEEEEEEECCCCCccceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeE
Confidence 33344455555444 432 1 1135567899999999999999999976 47899999876431110 011246899
Q ss_pred EEEecCC-CCHHHHHHHHHhcCCcEEEEEeCCC--CCceecCCCCcccccccccCCcceeEEEEehhhHHHHHHHHhCCC
Q 010010 93 LLVDRGD-CYFTLKAWNAQKGGAAAILVADDKT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGE 169 (520)
Q Consensus 93 vLV~RG~-CsF~~Kv~nAQ~aGA~aVII~dn~~--e~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~dG~~L~~~l~~g~ 169 (520)
+||+||+ |+|.+|++|||++||+||||||+.. +.+++|..++ ..+||++||++++|+.|+++|++|.
T Consensus 108 aLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~ 177 (194)
T 3icu_A 108 ALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGI 177 (194)
T ss_dssp EEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTC
T ss_pred EEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCC
Confidence 9999999 9999999999999999999999852 3557886332 3579999999999999999999999
Q ss_pred eeEEEEEec
Q 010010 170 MVNMNLDWT 178 (520)
Q Consensus 170 ~V~v~l~~~ 178 (520)
+|+++|...
T Consensus 178 ~Vtvti~vg 186 (194)
T 3icu_A 178 QVTMVIEVG 186 (194)
T ss_dssp CEEEEEEEE
T ss_pred eEEEEEECC
Confidence 999988773
No 2
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.96 E-value=8.2e-09 Score=110.08 Aligned_cols=105 Identities=19% Similarity=0.122 Sum_probs=77.3
Q ss_pred CCceEEEEeccCCCccCCCCCCCCCcccCCCCCCCCeEEEEecCCCC---------HHHHH----HHHHhcCCcEEEEEe
Q 010010 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY---------FTLKA----WNAQKGGAAAILVAD 121 (520)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~Cs---------F~~Kv----~nAQ~aGA~aVII~d 121 (520)
.+.++|+||+.. +...|+.... ..++||||||+||.|. |..|. .+|+++||+||||++
T Consensus 103 ~~~vta~lV~v~-~~~~~~~~~~--------~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~ 173 (444)
T 3iib_A 103 AQGLSATIVRFD-TLQDLQNAEA--------GSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRS 173 (444)
T ss_dssp TTCEEEEEEEES-SHHHHHTSCT--------TTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEecC-CHHHHhhccc--------cccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEc
Confidence 467999999864 2334443211 3578999999999995 77774 579999999999999
Q ss_pred CCCCCc---e--ecCCCCcccccccccCCcceeEEEEehhhHHHHHHHHhCCCeeEEEEEe
Q 010010 122 DKTEPL---I--TMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDW 177 (520)
Q Consensus 122 n~~e~l---~--tM~~p~d~~~~~~~~~~i~IPsv~Isk~dG~~L~~~l~~g~~V~v~l~~ 177 (520)
+..... . +|..+ .....||++.|+.++|+.|+++++.|+.+.+++..
T Consensus 174 ~~~~~~~~~~tg~~~~~---------~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~ 225 (444)
T 3iib_A 174 IGTDHDRMAHTGMMRYE---------EGVTAIPAAAISNPDADLINAMLKRDKEVVISLEL 225 (444)
T ss_dssp SCSCCSSCCCCCBCCCC---------TTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred cCCcccccccCCccccC---------CCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEE
Confidence 754321 1 12111 12468999999999999999999998877777766
No 3
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.87 E-value=1.7e-08 Score=106.72 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=74.0
Q ss_pred CceEEEEeccCCCccCCCCCCCCCcccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCce-ecCCCC
Q 010010 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLI-TMDTPE 134 (520)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~-tM~~p~ 134 (520)
+.++|.|++.. .| .+.+ |+. -+++|+||||+||+|+|..|+++|+++||+||||+++.+.++. +|+
T Consensus 91 g~v~a~lv~~~---~G-~~~D-----~~~-~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~--- 157 (421)
T 2ek8_A 91 SDVTAELVYVG---LG-TTAD-----VAG-KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLG--- 157 (421)
T ss_dssp EEEEEEEEECT---TC-CTTT-----TTT-SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCS---
T ss_pred CCcceEEEECC---CC-Chhh-----cCC-CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccC---
Confidence 47899998742 23 2222 210 2568999999999999999999999999999999998654332 221
Q ss_pred cccccccccCCcceeEEEEehhhHHHHHHHH---hCCCeeEEEEEe
Q 010010 135 EENADAEYLQNITIPSALISKSLGDSIKKSL---SGGEMVNMNLDW 177 (520)
Q Consensus 135 d~~~~~~~~~~i~IPsv~Isk~dG~~L~~~l---~~g~~V~v~l~~ 177 (520)
+ .....||++.|+.++|+.|++.+ +.| .+.+++..
T Consensus 158 ~-------~~~~~IP~~~Is~~~a~~L~~~l~~~~~g-~~~v~l~~ 195 (421)
T 2ek8_A 158 G-------SDASFVAAVGITKQEGDALAANLRAGEKI-TATVKVAG 195 (421)
T ss_dssp S-------CCTTCCEEEEECHHHHHHHHHHHHTTCCC-EEEEEEES
T ss_pred C-------CCCCCccEEEeCHHHHHHHHHHhhhhccC-Cccccccc
Confidence 1 12468999999999999999999 444 45566554
No 4
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.53 E-value=1.4e-07 Score=105.76 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=70.2
Q ss_pred CCceEEEEeccCCCccCCCCCCCCCcccCC--CCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCC-------
Q 010010 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKS--RPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTE------- 125 (520)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~--~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e------- 125 (520)
.++++|.|||. +.||.. +.. .+.. ..+++|+||||+||.|+|..|++||+++||+|||||++..+
T Consensus 124 ~G~v~g~lV~v---~~G~~~-Df~--~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~ 197 (707)
T 3fed_A 124 QGMPEGDLVYV---NYARTE-DFF--KLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQ 197 (707)
T ss_dssp CBCCEECEEEC---TTCCHH-HHH--HHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCC
T ss_pred CCceEEEEEEe---cCCchh-hHH--HHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccc
Confidence 45789999986 356621 110 0110 13578999999999999999999999999999999986310
Q ss_pred ----------------CceecCCCCcccccccc--------------cCCcceeEEEEehhhHHHHHHHHhC
Q 010010 126 ----------------PLITMDTPEEENADAEY--------------LQNITIPSALISKSLGDSIKKSLSG 167 (520)
Q Consensus 126 ----------------~l~tM~~p~d~~~~~~~--------------~~~i~IPsv~Isk~dG~~L~~~l~~ 167 (520)
.+..+..|+|.. ..++ ....+||++-|+..+|+.|.+.|..
T Consensus 198 ~yP~~~~~p~~~vqrGsv~~~~~~GDp~-TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 198 PYPKGWNLPGTAAQRGNVLNLNGAGDPL-TPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp BTTTSSBCCTTCCCCCCCCCCTTCCSTT-CTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cCCCCccCCCccccccceecccCCCCCC-CCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 000000112100 0011 1236899999999999999998864
No 5
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.32 E-value=9.5e-07 Score=98.19 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=68.6
Q ss_pred CCceEEEEeccCCCccCCCCCCCCCcccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC-ce-----
Q 010010 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-LI----- 128 (520)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~-l~----- 128 (520)
.+.++|.||++ ..|+.. +.. .++ -+++|+||||+||.|+|..|+++|+++||+|||||++..+. ..
T Consensus 105 ~g~v~g~lV~v---g~G~~~-D~~--~l~--vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~ 176 (640)
T 3kas_A 105 AATVTGKLVHA---NFGTKK-DFE--DLY--TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELS 176 (640)
T ss_dssp CEEEEECEEEC---TTCCHH-HHH--TCS--SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCC
T ss_pred CCceEEEEEEe---cCCChh-hHH--Hhh--cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccc
Confidence 35689999885 355532 111 111 25689999999999999999999999999999999976321 10
Q ss_pred -----ecCCCCcc-ccc------c-----cccCCcceeEEEEehhhHHHHHHHHh
Q 010010 129 -----TMDTPEEE-NAD------A-----EYLQNITIPSALISKSLGDSIKKSLS 166 (520)
Q Consensus 129 -----tM~~p~d~-~~~------~-----~~~~~i~IPsv~Isk~dG~~L~~~l~ 166 (520)
.+. ++|. +.+ . .......||++-|+.++|+.|.+.+.
T Consensus 177 ~~G~~~~~-~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 177 FFGHAHLG-TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCEECCSS-SSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccccccC-CCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 000 1110 000 0 00113479999999999999998764
No 6
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=98.03 E-value=1.5e-06 Score=64.86 Aligned_cols=43 Identities=33% Similarity=0.789 Sum_probs=34.3
Q ss_pred chhhhhhhc-------cCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 411 DVDECEEKL-------ACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 411 didEC~~~~-------~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
|||||.... .-.|.. .|.||.|+|+|.|..||.+..++.+|..
T Consensus 3 DidEC~~~~~~~~~~~~~~C~~-~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 3 DLDECASRSKSGEEDPQPQCQH-LCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTSS-EEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred ccccccCcccccccccCCCCCC-EeECCCCCeEEECCCCCeECCCCCccCC
Confidence 899998631 123433 8999999999999999988888888874
No 7
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=97.94 E-value=1.2e-05 Score=89.57 Aligned_cols=95 Identities=14% Similarity=0.213 Sum_probs=72.4
Q ss_pred EeccCCCccCCCCCCCCCcccCCCCCC--CCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCccccc
Q 010010 62 VVYPKANQKACKGFDEVDLSFKSRPGG--LPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENAD 139 (520)
Q Consensus 62 lv~~~~~~~gC~~~~~~~~~~~~~~~~--~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~p~d~~~~ 139 (520)
|+++. ....|.+..... ..+ +++|+|++||.|.|.+|..+++++||+++|++|+. +.+ .
T Consensus 261 lv~~~-~~~~C~~~~l~~------~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~-~~~--~--------- 321 (649)
T 3i6s_A 261 VIYNK-TLSDCSSEELLS------QVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDP-GVF--R--------- 321 (649)
T ss_dssp EECCT-TTTTCCCHHHHT------TSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCG-GGG--G---------
T ss_pred eEecc-cccccccccccc------cccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCc-ccc--c---------
Confidence 44433 456788753221 223 79999999999999999999999999999999875 211 1
Q ss_pred ccccCCcceeEEEEehhhHHHHHHHHhCCCeeEEEEEec
Q 010010 140 AEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWT 178 (520)
Q Consensus 140 ~~~~~~i~IPsv~Isk~dG~~L~~~l~~g~~V~v~l~~~ 178 (520)
.....||+++|+.++|+.|++++.++...++++.+.
T Consensus 322 ---~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~ 357 (649)
T 3i6s_A 322 ---SATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQ 357 (649)
T ss_dssp ---CCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEE
T ss_pred ---cccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeec
Confidence 123588999999999999999999987666666553
No 8
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=97.87 E-value=4.4e-06 Score=68.76 Aligned_cols=56 Identities=32% Similarity=0.783 Sum_probs=43.7
Q ss_pred hc-cCcCC-CCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeee
Q 010010 395 CA-GFQET-TEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCI 453 (520)
Q Consensus 395 C~-gf~~~-~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci 453 (520)
|. ||... .....|. |||||... .+.|...+|.||.|+|+|.|..||....+..+||
T Consensus 29 C~~Gy~~~~~~g~~C~--dideC~~~-~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~Ci 86 (86)
T 1lmj_A 29 CDEGYESGFMMMKNCM--DIDECQRD-PLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86 (86)
T ss_dssp CCSSEEECTTTSSSEE--ECCHHHHC-SSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred CCCCcCccCCCCCccC--CcccccCC-CCcCCCCEeEcCCCCEEEECcCCcccCCCCCccC
Confidence 65 88522 1245687 89999864 5566667999999999999999999877777775
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.75 E-value=5.9e-05 Score=80.04 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCCCCeEEEEecCCC-----CHHHHHHHHHhcCCcEEEEEeCCCCCc----eecCCCCcccccccccCCcceeEEEEehh
Q 010010 86 PGGLPTFLLVDRGDC-----YFTLKAWNAQKGGAAAILVADDKTEPL----ITMDTPEEENADAEYLQNITIPSALISKS 156 (520)
Q Consensus 86 ~~~~~~IvLV~RG~C-----sF~~Kv~nAQ~aGA~aVII~dn~~e~l----~tM~~p~d~~~~~~~~~~i~IPsv~Isk~ 156 (520)
+.++++|+|++||.| +|..|+.+|+++||+++||++|...+- ..++ ......||+++|+++
T Consensus 270 ~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~----------~~~~~~~p~~~v~~~ 339 (441)
T 1y9z_A 270 GNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVD----------ANSDITVPSVSVDRA 339 (441)
T ss_dssp CCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEEC----------TTCCCCSCEEEECHH
T ss_pred CCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccc----------cccCccccEEEEeHH
Confidence 467899999999987 899999999999999999999864221 1221 123468999999999
Q ss_pred hHHHHHHHHhCCCeeEEE
Q 010010 157 LGDSIKKSLSGGEMVNMN 174 (520)
Q Consensus 157 dG~~L~~~l~~g~~V~v~ 174 (520)
+|+.|++++. ..++++
T Consensus 340 ~g~~l~~~~~--~~~t~~ 355 (441)
T 1y9z_A 340 TGLALKAKLG--QSTTVS 355 (441)
T ss_dssp HHHHHHTTTT--SEEEEE
T ss_pred HHHHHHHHhc--CCcccc
Confidence 9999998874 445543
No 10
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.62 E-value=0.00014 Score=84.23 Aligned_cols=73 Identities=27% Similarity=0.422 Sum_probs=57.8
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCc-eecCCCCcccccccccCCcceeEEEEehhhHHHHHHHH
Q 010010 87 GGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL-ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSL 165 (520)
Q Consensus 87 ~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l-~tM~~p~d~~~~~~~~~~i~IPsv~Isk~dG~~L~~~l 165 (520)
.++++|+|++||.|+|.+|+.+|+++||.++|++|+..+.. +.+ + ....||+++|++++|+.|+.
T Consensus 278 ~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~--~----------~~~~iP~~~i~~~~g~~l~~-- 343 (926)
T 1xf1_A 278 DVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL--P----------NVDQMPAAFISRKDGLLLKD-- 343 (926)
T ss_dssp TCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC--C----------CSTTCCEEEECHHHHHHHHH--
T ss_pred hcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc--C----------ccccccEEEEeHHHHHHHHh--
Confidence 56899999999999999999999999999999998864322 221 1 23578999999999998884
Q ss_pred hCCCeeEEEE
Q 010010 166 SGGEMVNMNL 175 (520)
Q Consensus 166 ~~g~~V~v~l 175 (520)
+..+++++
T Consensus 344 --~~~~ti~~ 351 (926)
T 1xf1_A 344 --NPQKTITF 351 (926)
T ss_dssp --CSSCEEEE
T ss_pred --CCceEEEe
Confidence 33445544
No 11
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=97.30 E-value=6.1e-05 Score=56.94 Aligned_cols=42 Identities=24% Similarity=0.589 Sum_probs=33.2
Q ss_pred hhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeeccC
Q 010010 413 DECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 413 dEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
|||+.. .-.|.. .|.||.|||.|.|..||.+..++.+|+...
T Consensus 2 dEC~~~-~~~C~~-~C~nt~Gsy~C~C~~Gy~L~~d~~~C~did 43 (55)
T 2jkh_L 2 KLCSLD-NGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIPTG 43 (55)
T ss_dssp CCTTTG-GGGCSS-EEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred ccccCC-CCCcCc-EeEcCCCCeEEeCCCCCEECCCCCeeccCc
Confidence 788753 223444 899999999999999999888889997643
No 12
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=97.29 E-value=6.9e-05 Score=59.55 Aligned_cols=44 Identities=23% Similarity=0.512 Sum_probs=35.6
Q ss_pred chhhhhhhccCCCCCCccccCCC-ceeeecCCCccccccCCeeeccC
Q 010010 411 DVDECEEKLACQCPECKCKDTWG-SYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g-~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
|+|||.... -.|+. .|.||.| ||.|+|..||.+..++.+|+...
T Consensus 4 d~~eC~~~n-ggC~h-~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~d 48 (69)
T 1kli_L 4 DQLICVNEN-GGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTPTV 48 (69)
T ss_dssp CCCCTTSGG-GGCSS-EEEEETTTEEEEECCTTEEECTTSSCEEECS
T ss_pred ccccccCCC-CCcCC-EeEcCCCCCEEEeCCCCCeECCCCCcccCcc
Confidence 899997642 12433 6999999 89999999999999999998753
No 13
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.19 E-value=7.6e-05 Score=59.59 Aligned_cols=27 Identities=44% Similarity=0.914 Sum_probs=21.4
Q ss_pred chhhhhhh-ccCCCCCCccccCCCceeee
Q 010010 411 DVDECEEK-LACQCPECKCKDTWGSYECS 438 (520)
Q Consensus 411 didEC~~~-~~c~c~~~~C~nt~g~y~C~ 438 (520)
|||||... ..|+ ...+|.||.|+|+|.
T Consensus 2 DidEC~~~~~~C~-~~~~C~Nt~Gsy~C~ 29 (71)
T 2kl7_A 2 DVNECLTIPEACK-GEMKCINHYGGYLCL 29 (71)
T ss_dssp CSCCTTCCCCSCT-TEEEEEETTCCEEEE
T ss_pred ccccccCCCCCCC-CCCEeECCCCCeEec
Confidence 89999864 2444 346899999999999
No 14
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=97.14 E-value=0.00021 Score=65.32 Aligned_cols=60 Identities=35% Similarity=0.773 Sum_probs=43.6
Q ss_pred HHHHhhc---cCcCCCCCCccCCcchhhhhhh-ccCCCCCCccccCCCceeeecCCCccccccCCeee
Q 010010 390 VLKAICA---GFQETTEPAICLSEDVDECEEK-LACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCI 453 (520)
Q Consensus 390 vl~~iC~---gf~~~~~P~~C~~~didEC~~~-~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci 453 (520)
-++-+|. ||.-...-..|. |||||++. ..|+ ...|.||.|+|+|.|+.||....++.+|+
T Consensus 99 ~y~C~C~~g~G~~~~~~~~~c~--dideC~~~~~~C~--~g~C~n~~gsy~C~C~~Gy~g~~d~~~C~ 162 (162)
T 1uzk_A 99 EYKILCPGGEGFRPNPITVILE--DIDECQELPGLCQ--GGKCINTFGSFQCRCPTGYYLNEDTRVCD 162 (162)
T ss_dssp HHHHHCTTCTTEEECTTTCCEE--ECCHHHHCGGGGB--TSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred CceeECCCCCCcccCCCCCccC--ccccccCCCCCcC--CCEeEcCCCCEEeeCCCCccCCCCCCccC
Confidence 3455665 665322223566 89999873 3565 45899999999999999999888888875
No 15
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=97.13 E-value=5.8e-05 Score=64.86 Aligned_cols=52 Identities=33% Similarity=0.817 Sum_probs=8.3
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCee
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTC 452 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~C 452 (520)
|. ||.- .....|. |||||.....|+ ..|.||.|+|.|.|..||....+..+|
T Consensus 54 C~~Gy~g-~~g~~C~--dideC~~~~~C~---~~C~n~~gsy~C~C~~Gy~~~~d~~~C 106 (107)
T 2w2n_E 54 CPDGFQL-VAQRRCE--DIDECQDPDTCS---QLCVNLEGGYKCQCEEGFQLDPHTKAC 106 (107)
T ss_dssp CCTTCEE-ETTTEEE--C-----------------------------------------
T ss_pred CCCCccc-cCCCccc--cccccCCCCCcC---CeeecCCCCEEEECCCCceECCCCCcc
Confidence 55 7752 2336787 899998544554 489999999999999998876666666
No 16
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=97.09 E-value=0.00022 Score=58.64 Aligned_cols=54 Identities=31% Similarity=0.779 Sum_probs=39.9
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeec--CCCccccccCCeeec
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSC--GSGLLYMQEHDTCIS 454 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C--~~~~~~~~~~~~Ci~ 454 (520)
|. ||.-...-..|. |||||.. ..|+ ..|.||.|+|+|.| ..||....+..+|.+
T Consensus 29 C~~G~~~~~~g~~C~--dideC~~-~~C~---~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~d 85 (87)
T 1z6c_A 29 CPEGYRYNLKSKSCE--DIDECSE-NMCA---QLCVNYPGGYTCYCDGKKGFKLAQDQKSCEV 85 (87)
T ss_dssp SSTTCEEETTTTEEE--CCCHHHH-SCCS---SEECCCSSSCCEECCSSSCCBCCTTSSSCBC
T ss_pred CCCCceECCCCCcCC--CcCeeCC-CCCC---CEEEccCCCEEEECCCCcCCcccCCCCcceE
Confidence 55 885333345786 8999975 4555 48999999999999 577777677777764
No 17
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=96.96 E-value=0.00026 Score=70.94 Aligned_cols=41 Identities=17% Similarity=0.574 Sum_probs=29.0
Q ss_pred chhhhhhh-ccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 411 DVDECEEK-LACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 411 didEC~~~-~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
|||||+.. ..|+ +.+.|.||.|||.|.|+.||. .++..|..
T Consensus 4 DiDEC~~~~~~C~-~~a~C~Nt~Gsy~C~C~~Gy~--GnG~~C~d 45 (285)
T 1gl4_A 4 AQQTCANNRHQCS-VHAECRDYATGFCCRCVANYT--GNGRQCVA 45 (285)
T ss_dssp ---CHHHHGGGSC-TTEEEEECSSCEEEEECTTEE--ECSSSEEE
T ss_pred cchhccCCCCCCC-CCCEeEcCCCCeEEEcCCCCC--CCCCcCCC
Confidence 89999864 2454 467999999999999999974 45556643
No 18
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=96.88 E-value=0.00025 Score=61.64 Aligned_cols=48 Identities=33% Similarity=0.772 Sum_probs=36.7
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCcccccc
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQE 448 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~ 448 (520)
|. ||.-.. ...|. |||||.....| +..|+|+.|+|+|.|..||....+
T Consensus 65 C~~Gy~~~~-g~~C~--dideC~~~~~C---~~~C~n~~g~y~C~C~~G~~g~~~ 113 (118)
T 1dx5_I 65 CPEGYILDD-GFICT--DIDECENGGFC---SGVCHNLPGTFECICGPDSALAGQ 113 (118)
T ss_dssp CCTTEEEET-TTEEE--ECCHHHHCSSC---SSEEEECSSSEEEEECSSSSCEEE
T ss_pred CCCCccCCC-CCccc--cccccCCCCCC---cCeEEeCCCCEEEECCCCCccCCC
Confidence 54 775222 56786 89999874455 678999999999999999876544
No 19
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=96.88 E-value=0.00036 Score=63.71 Aligned_cols=42 Identities=31% Similarity=0.689 Sum_probs=34.1
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
|||||.....|+ ...|.||.|+|+|.|..||.+..++.+|..
T Consensus 2 dideC~~~~~C~--~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d 43 (162)
T 1uzk_A 2 DVNECLDPTTCI--SGNCVNTPGSYICDCPPDFELNPTRVGCVD 43 (162)
T ss_dssp CCCGGGSTTSSB--TSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred ccccCCCCCCCC--CCEeECCCCCEEEeCCCCCeECCCCCcccC
Confidence 899998655664 569999999999999999987555666653
No 20
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.87 E-value=0.00031 Score=73.18 Aligned_cols=56 Identities=30% Similarity=0.765 Sum_probs=43.1
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeeccC
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
|. ||.- ..-..|. |||||.+.. .|.. .|.||.|+|.|.|..||.+..+..+|....
T Consensus 25 C~~G~~~-~~~~~C~--dideC~~~~--~C~~-~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~ 81 (400)
T 3p5b_L 25 CPDGFQL-VAQRRCE--DIDECQDPD--TCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAVG 81 (400)
T ss_dssp CCTTEEE-CSSSCEE--ECCCCSTTS--SCSS-CCBCCSSSCBCCCCTTCCCCTTTSSCCCST
T ss_pred CCCCCCc-CCCCccc--CchhhhccC--CCCC-ccCCCccceeeeccccccccccccceeecc
Confidence 55 8862 2235697 999998643 4545 899999999999999998877888887653
No 21
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=96.87 E-value=0.00036 Score=56.73 Aligned_cols=33 Identities=42% Similarity=0.943 Sum_probs=25.0
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccc
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLY 445 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~ 445 (520)
|||||.....|+ ...|.|+.|+|+|.|..||.+
T Consensus 4 dideC~~~~~C~--~g~C~n~~g~y~C~C~~Gy~~ 36 (82)
T 1emn_A 4 DMDECKEPDVCK--HGQCINTDGSYRCECPFGYIL 36 (82)
T ss_dssp CCCSSSSTTSCS--SSEECCCSSCCCEECCTTEEE
T ss_pred ccccCCCCCCcC--CCEEEecCCCEEEECCCCeEC
Confidence 788887633443 468889999999999888753
No 22
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=96.87 E-value=0.00035 Score=57.43 Aligned_cols=42 Identities=38% Similarity=0.831 Sum_probs=32.6
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeee
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCI 453 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci 453 (520)
|||||... .+.|....|.|+.|+|+|.|..||.+..++.+|.
T Consensus 2 dideC~~~-~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~ 43 (87)
T 1z6c_A 2 DVDECSLK-PSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE 43 (87)
T ss_dssp CSCSSSSS-SSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEE
T ss_pred ccccccCC-CCCCCCCEeECCCCCEEEECCCCceECCCCCcCC
Confidence 79999864 4345667899999999999999988654455553
No 23
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=96.79 E-value=0.00045 Score=62.01 Aligned_cols=55 Identities=35% Similarity=0.817 Sum_probs=41.8
Q ss_pred hhc-cCcCCCCCCccCCcchhhhhhh-ccCCCCCCccccCCCceeeecCCCccccccCCeee
Q 010010 394 ICA-GFQETTEPAICLSEDVDECEEK-LACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCI 453 (520)
Q Consensus 394 iC~-gf~~~~~P~~C~~~didEC~~~-~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci 453 (520)
+|. ||.. ..-..|. |||||+.. ..|+ ..+|+||.|+|+|.|+.||....++++|+
T Consensus 91 ~C~~Gy~~-~~g~~C~--dideC~~~~~~C~--~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~ 147 (147)
T 2w86_A 91 ICGKGYSR-IKGTQCE--DIDECEVFPGVCK--NGLCVNTRGSFKCQCPSGMTLDATGRICL 147 (147)
T ss_dssp TTCTTEEE-EETTEEE--ECCHHHHSTTCSS--SSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred cCCCcccc-CCCCccC--ccccccCCCCCCC--CCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence 576 8841 1235687 89999863 2355 44899999999999999999877788885
No 24
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.63 E-value=0.00053 Score=70.91 Aligned_cols=58 Identities=28% Similarity=0.741 Sum_probs=23.1
Q ss_pred hhc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeeccC
Q 010010 394 ICA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 394 iC~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
.|. ||+-...-..|. |||||.+...|+ . .|.||.|+|.|.|..||.+..++.+|....
T Consensus 27 ~C~~G~~l~~~~~~C~--d~~eC~~~~~C~--~-~C~~~~g~~~C~C~~g~~l~~d~~~C~~~~ 85 (386)
T 3v65_B 27 TCHTGYRLTEDGRTCQ--DVNECAEEGYCS--Q-GCTNSEGAFQCWCEAGYELRPDRRSCKALG 85 (386)
T ss_dssp ---------------------------CCT--T-EEC-----CCEECCTTEEECTTSSCEEECS
T ss_pred ECCCCceECCCCCccC--ccceeCCcCccc--C-cCCCCCCCCeEEECCCceEcCCCCeECCcc
Confidence 465 886222235796 899998544554 3 499999999999999998877888997643
No 25
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=96.56 E-value=0.0009 Score=54.33 Aligned_cols=51 Identities=33% Similarity=0.776 Sum_probs=36.9
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCee
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTC 452 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~C 452 (520)
|. ||.. .-..|. |||||.....|+ ...|.|+.|+|.|.|..||....+ .+|
T Consensus 30 C~~Gy~~--~g~~C~--dideC~~~~~C~--~~~C~n~~g~y~C~C~~G~~g~~~-~~C 81 (82)
T 1emn_A 30 CPFGYIL--AGNECV--DTDECSVGNPCG--NGTCKNVIGGFECTCEEGFEPGPM-MTC 81 (82)
T ss_dssp CCTTEEE--ETTEEE--ECCGGGTCCTTS--SSCEEECSSSEEECCSSSSCCCSS-SCC
T ss_pred CCCCeEC--CCCccC--CcccccCCCCCC--CCEeECCCCCEEeECCCCeEeCCC-Ccc
Confidence 55 7741 234686 899998644554 458999999999999999876444 445
No 26
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=96.47 E-value=0.00079 Score=46.78 Aligned_cols=32 Identities=44% Similarity=0.827 Sum_probs=25.9
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCcc
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
|+|||+. .+|+ .+.+|.|+.|+|.|.|+.||.
T Consensus 2 d~d~C~~-~pC~-ngg~C~~~~~~~~C~C~~G~~ 33 (39)
T 1edm_B 2 DGDQCES-NPCL-NGGSCKDDINSYECWCPFGFE 33 (39)
T ss_dssp CCCTTTT-CCCC-TTCEEEEETTEEEEECCTTCC
T ss_pred ccccCCC-CCCC-CCCEeEcCCCceEeECCCCCc
Confidence 7899974 3555 346899999999999999974
No 27
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=96.37 E-value=0.0012 Score=54.06 Aligned_cols=34 Identities=35% Similarity=0.797 Sum_probs=27.0
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccc
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLY 445 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~ 445 (520)
|||||+.. .-.|....|.|+.|+|+|.|..||..
T Consensus 2 dideC~~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~ 35 (86)
T 1lmj_A 2 DIDECRIS-PDLCGRGQCVNTPGDFECKCDEGYES 35 (86)
T ss_dssp CCCTTTTC-SSTTTTSCEEEETTEEEECCCSSEEE
T ss_pred ccccccCC-CCCCCCCEEECCCCCEEeeCCCCcCc
Confidence 79999864 32244458999999999999999864
No 28
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=96.33 E-value=0.0011 Score=49.22 Aligned_cols=30 Identities=23% Similarity=0.747 Sum_probs=27.1
Q ss_pred ccccCCCceeeecCCCccccccCCeeeccC
Q 010010 427 KCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 427 ~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
.|.||.|+|+|.|+.||.+..++.+|+...
T Consensus 11 ~C~n~~gs~~C~C~~Gy~L~~d~~tC~did 40 (51)
T 1kig_L 11 FCREERSEVRCSCAHGYVLGDDSKSCVSTE 40 (51)
T ss_dssp CCCEETTEECCCCCTTEEECTTSSCEEECS
T ss_pred EeEcCCCCeEEeCCCCcEECCCCCccccCC
Confidence 699999999999999999988999998643
No 29
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=96.27 E-value=0.0013 Score=59.46 Aligned_cols=43 Identities=26% Similarity=0.692 Sum_probs=34.8
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
|+|||.......|.. .|.|+.|+|.|.|..||.+..++.+|..
T Consensus 116 d~~eC~~~~~~~C~~-~C~n~~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 116 DINECTDFVDVPCSH-FCNNFIGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp ECCTTTC-CCCCSSS-EEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred cCcccCCCCCCCCCC-cccCcCCCEEEecCCCcEECCCCCcccc
Confidence 789998754344544 7999999999999999999888889964
No 30
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=96.15 E-value=0.0022 Score=57.13 Aligned_cols=47 Identities=32% Similarity=0.622 Sum_probs=37.1
Q ss_pred CccCCcchhhhhhh-ccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 405 AICLSEDVDECEEK-LACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 405 ~~C~~~didEC~~~-~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
..|. |||||.+. ..|+ ....|.||.|+|+|.|..||....+...|..
T Consensus 91 ~~C~--dideC~~~~~~C~-~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~ 138 (143)
T 2bou_A 91 NTCQ--DVDECSSGQHQCD-SSTVCFNTVGSYSCRCRPGWKPRHGIPNNQK 138 (143)
T ss_dssp CCEE--ECCHHHHTCCCCC-TTSEEEECSSCEEEECCSSSCBCTTCCSSBT
T ss_pred CCcC--CccCccCcCCCCC-CCCEEECCCCCEEeeCCCCcccCCCCccCcc
Confidence 4687 89999873 3554 4578999999999999999988776666654
No 31
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=96.13 E-value=0.0014 Score=60.04 Aligned_cols=44 Identities=30% Similarity=0.800 Sum_probs=34.8
Q ss_pred chhhhhhhcc--CCCCCCccccCCCceeeecCCCccccccCCeeecc
Q 010010 411 DVDECEEKLA--CQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 411 didEC~~~~~--c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
|+|||..... ..|.. .|.||.|+|.|.|..||.+..++.+|...
T Consensus 123 di~eC~~~~~~~~~C~~-~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~ 168 (170)
T 1szb_A 123 DIDECQVAPGEAPTCDH-HCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168 (170)
T ss_dssp ECCTTCCCTTSCCSSSS-EEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred ccCcccCCCCCCCccCC-ccccCCCCEEEeCCCCcEECCCCCccccc
Confidence 7889986421 11444 79999999999999999988889999753
No 32
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=96.09 E-value=0.0022 Score=57.48 Aligned_cols=41 Identities=37% Similarity=0.772 Sum_probs=32.5
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
|||||+. .+|+ ...|.|+.|+|+|.|..||.....+.+|+.
T Consensus 3 dideC~~-~pC~--ng~C~n~~g~y~C~C~~G~~g~~~~~~C~~ 43 (147)
T 2w86_A 3 DIDECES-SPCI--NGVCKNSPGSFICECSSESTLDPTKTICIE 43 (147)
T ss_dssp CCCGGGG-CCSB--TSEEEEETTEEEEECCTTEEECTTSSBEEE
T ss_pred cCccCcC-CCCC--CCEeECCCCCEEeECCCCcccCCCCCeecC
Confidence 8999986 4665 459999999999999999876555556654
No 33
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=96.08 E-value=0.0033 Score=48.66 Aligned_cols=43 Identities=33% Similarity=0.688 Sum_probs=32.1
Q ss_pred chhhhhhhccCCCCC--CccccCCCceeeecCCCcc-c--cccCCeeecc
Q 010010 411 DVDECEEKLACQCPE--CKCKDTWGSYECSCGSGLL-Y--MQEHDTCISK 455 (520)
Q Consensus 411 didEC~~~~~c~c~~--~~C~nt~g~y~C~C~~~~~-~--~~~~~~Ci~~ 455 (520)
++|||.. .+|+ .+ .+|.|+.|+|.|.|+.||. - ..+..+|...
T Consensus 10 ~~d~C~s-nPC~-nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~~~~C~~~ 57 (61)
T 2k2s_B 10 TPAACSS-NPCG-PEAAGTCKETNSGYICRCNQGYRISLDGTGNVTCIVR 57 (61)
T ss_dssp SCCHHHH-CSSC-SSSCCEEEECSSEEEEECCTTEEEEECSSSCEEEEES
T ss_pred CCCcCcC-CCCc-CCCccccccCCCceEeECCCCCccCCCCCCCCEeccc
Confidence 7899985 4665 33 5899999999999999986 2 2344567654
No 34
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=95.93 E-value=0.14 Score=48.09 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=62.0
Q ss_pred hhhhhhcccCCCCcchhhhHHHHhhhCCCcc-hhhhHHHHHHHHHH-hCCChhhcccccCCccCcccchHHHHHHHHHhc
Q 010010 284 ACFFKVANESRKPWLWWDYVTDFAIRCPMKE-KKYTKECAEQVIKS-LGVDLKKVDECVGDPEADVDNQVLKTEQDAQIG 361 (520)
Q Consensus 284 lCi~~~~~~~~~~~~WW~Yv~~f~~~C~~~~-~~y~~~C~~~v~~~-l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~ 361 (520)
.|+++.... ++|+|.+..-..=.... ...+.+=-.+++++ +|+|.+++++|+.++.. . ..++++...-..
T Consensus 87 ~a~~~~~~~-----~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~--~-~~v~~~~~~a~~ 158 (202)
T 3gha_A 87 EEVWKEDPD-----SFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETF--A-SQVEKDSDLNQK 158 (202)
T ss_dssp HHHHHHCGG-----GHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTT--H-HHHHHHHHHHHH
T ss_pred HHHHhhCHH-----HHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHH--H-HHHHHHHHHHHH
Confidence 466555444 79999887433211111 11223445667888 89999999999975532 2 234443332212
Q ss_pred CCCCCCeEEecEEEEcCeeeecccChhhHHHHh
Q 010010 362 KGSRGDVTILPTLVINNRQYRGKLDKGAVLKAI 394 (520)
Q Consensus 362 ~~~~~~~~~~Ptl~IN~~~yrg~l~~~~vl~~i 394 (520)
.+|...||++|||+.+.|..+.+.+..+|
T Consensus 159 ----~gV~gtPtfvvnG~~~~G~~~~e~l~~~i 187 (202)
T 3gha_A 159 ----MNIQATPTIYVNDKVIKNFADYDEIKETI 187 (202)
T ss_dssp ----TTCCSSCEEEETTEECSCTTCHHHHHHHH
T ss_pred ----cCCCcCCEEEECCEEecCCCCHHHHHHHH
Confidence 34788999999999999987776655544
No 35
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.83 E-value=0.0031 Score=64.20 Aligned_cols=42 Identities=26% Similarity=0.729 Sum_probs=26.0
Q ss_pred hhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeeccC
Q 010010 412 VDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 412 idEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
||||.+... |++ .|.||.|||.|.|..||.+..++.+|....
T Consensus 1 i~ec~~~~~--C~~-~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~ 42 (349)
T 3v64_C 1 VNECAEEGY--CSQ-GCTNSEGAFQCWCEAGYELRPDRRSCKALG 42 (349)
T ss_dssp --------C--CSS-EECCC---CCEECCTTEEECTTSSCEEESS
T ss_pred CcccCCCCC--CcC-eeecCCCCeEEECCCCccCCCCCCcccccc
Confidence 689984333 444 799999999999999999888899998754
No 36
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.68 E-value=0.0018 Score=66.82 Aligned_cols=42 Identities=24% Similarity=0.655 Sum_probs=0.0
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
|+|||.. .+|.|.+ .|.|+.|+|.|.|..||.+..++.+|.+
T Consensus 2 ~~~~C~~-~~~~c~~-~C~~~~g~~~C~C~~G~~l~~~~~~C~d 43 (386)
T 3v65_B 2 GEENCNV-NNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQD 43 (386)
T ss_dssp --------------------------------------------
T ss_pred CcCcccC-CCCCCCC-CCcCCCCCcEeECCCCceECCCCCccCc
Confidence 7999976 3677776 8999999999999999987666666643
No 37
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.63 E-value=0.0057 Score=68.42 Aligned_cols=55 Identities=31% Similarity=0.758 Sum_probs=42.7
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeecc
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
|. ||+- ..-..|. |||||.+...| + ..|.||.|||+|.|..||.+..++.+|...
T Consensus 319 C~~G~~~-~~~~~C~--dideC~~~~~C--~-~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~ 374 (699)
T 1n7d_A 319 CPDGFQL-VAQRRCE--DIDECQDPDTC--S-QLCVNLEGGYKCQCEEGFQLDPHTKACKAV 374 (699)
T ss_dssp CCSSSCC-CSSSCCC--CCCCCSSSSSC--T-TTCCBCSSCBCCCCCSSCBCCSSCCCCBCC
T ss_pred CCCCeEc-CCCCccc--CccccCCCCcc--c-cccccCCCCeeeeeecccccCCCCCccccc
Confidence 55 8863 2345688 89999864454 3 389999999999999999887788888754
No 38
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=95.56 E-value=0.0049 Score=55.60 Aligned_cols=53 Identities=25% Similarity=0.584 Sum_probs=41.9
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCcc-ccCCCceeeecCCCccccccCCeeecc
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKC-KDTWGSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C-~nt~g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
|. ||. -..|. |+|||... .+.|.. .| .|+.|+|.|.|..||.+..++.+|...
T Consensus 73 C~~G~~----G~~C~--~~deC~~~-~~~C~~-~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~ 127 (146)
T 1x7a_L 73 CQVGFE----GKNCE--LDATCNIK-NGRCKQ-FCKTGADSKVLCSCTTGYRLAPDQKSCKPA 127 (146)
T ss_dssp CCSSEE----STTTC--EECCTTSG-GGSCSS-BCCCCSSSCCCCBCCTTEEECTTSSSEEEC
T ss_pred cCCCCc----CCcCC--CCccccCC-CCCCcC-CCCCCCCCCEEeEcCCCcEeCCCCCcCCCC
Confidence 55 775 24687 78999863 455656 89 999999999999999887778888765
No 39
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=95.55 E-value=0.22 Score=45.39 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=60.4
Q ss_pred hhhhhhcccCCCCcchhhhHHHHhhhCCC-cchhhhHHHHHHHHHHhCCChhh---ccccc--CCccCcccchHHHHHHH
Q 010010 284 ACFFKVANESRKPWLWWDYVTDFAIRCPM-KEKKYTKECAEQVIKSLGVDLKK---VDECV--GDPEADVDNQVLKTEQD 357 (520)
Q Consensus 284 lCi~~~~~~~~~~~~WW~Yv~~f~~~C~~-~~~~y~~~C~~~v~~~l~id~~k---v~~C~--~~~~~d~~N~iL~~e~~ 357 (520)
+|+.+...+ .+|+|.+..-..=.. .....+.+=-.++++++|+|.++ +.+|+ .++. ..+ .++++..
T Consensus 69 ~~a~~~~~~-----~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~--~~~-~v~~~~~ 140 (186)
T 3bci_A 69 HAVLMYAPK-----SFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSK--SWK-AAEKDKK 140 (186)
T ss_dssp HHHHHHCGG-----GHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCH--HHH-HHHHHHH
T ss_pred HHHHHhCHH-----HHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHH--HHH-HHHHHHH
Confidence 455544333 688888865332111 11122345566788899999999 99998 5442 122 3443333
Q ss_pred HHhcCCCCCCeEEecEEEEcCeeeecccChhhHHHHh
Q 010010 358 AQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAI 394 (520)
Q Consensus 358 ~q~~~~~~~~~~~~Ptl~IN~~~yrg~l~~~~vl~~i 394 (520)
.-.. .++...||++|||+.+.|..+.+.+..+|
T Consensus 141 ~a~~----~gv~GtPt~vvnG~~~~G~~~~~~l~~~i 173 (186)
T 3bci_A 141 IAKD----NHIKTTPTAFINGEKVEDPYDYESYEKLL 173 (186)
T ss_dssp HHHH----TTCCSSSEEEETTEECSCTTCHHHHHHHH
T ss_pred HHHH----cCCCCCCeEEECCEEcCCCCCHHHHHHHH
Confidence 2112 34788999999999988877776665555
No 40
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.54 E-value=0.0034 Score=71.47 Aligned_cols=55 Identities=31% Similarity=0.789 Sum_probs=43.1
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeecc
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
|. ||+- .....|. |||||.. .+.|+. .|.||.|||.|.|..||.+..++.+|...
T Consensus 337 C~~Gy~l-~~g~~C~--dideC~~--~~~C~~-~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~ 392 (791)
T 3m0c_C 337 CPDGFQL-VAQRRCE--DIDECQD--PDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAV 392 (791)
T ss_dssp CCTTCEE-ETTTEEE--CCCCCSS--SSSCTT-TCCBCSSCBCCCCCSSEECCSSCCCCEET
T ss_pred CCCCCcc-CCCCccc--cCcccCC--CCCCCC-eeecCCCCceeecCCCCEeCCCCceeeec
Confidence 55 8852 2345788 8999985 456655 89999999999999999887778888764
No 41
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=95.19 E-value=0.007 Score=46.31 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=26.8
Q ss_pred ccccCC-CceeeecCCCccccccCCeeeccC
Q 010010 427 KCKDTW-GSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 427 ~C~nt~-g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
.|.||. |||.|+|..||.+..++.+|++..
T Consensus 12 ~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~ 42 (59)
T 2wph_E 12 FCKNSADNKVVCSCTEGYRLAENQKSCEPAV 42 (59)
T ss_dssp EEEECSTTCEEEECCTTEEECTTSSCEEESS
T ss_pred EeEeCCCCCEEeeCCCCcEECCCCCcccCCC
Confidence 699999 699999999999989999998743
No 42
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=95.18 E-value=0.0059 Score=45.62 Aligned_cols=30 Identities=23% Similarity=0.585 Sum_probs=27.0
Q ss_pred ccccCCC-ceeeecCCCccccccCCeeeccC
Q 010010 427 KCKDTWG-SYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 427 ~C~nt~g-~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
.|.||.| +|.|+|..||.+..++.+|++..
T Consensus 12 ~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~d 42 (53)
T 2bz6_L 12 YCSDHTGTKRSCRCHEGYSLLADGVSCTPTV 42 (53)
T ss_dssp EEEEETTTEEEEECCTTEEECTTSSCEEECS
T ss_pred EeEcCCCCCEEeeCCCCCEECCCCCcccCCc
Confidence 6999999 89999999999989999998753
No 43
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=95.04 E-value=0.0071 Score=53.71 Aligned_cols=41 Identities=32% Similarity=0.695 Sum_probs=30.5
Q ss_pred CCccCCcchhhhhhhccCCC-CCCccccCCCceeeecCCCcccc
Q 010010 404 PAICLSEDVDECEEKLACQC-PECKCKDTWGSYECSCGSGLLYM 446 (520)
Q Consensus 404 P~~C~~~didEC~~~~~c~c-~~~~C~nt~g~y~C~C~~~~~~~ 446 (520)
...|. |||||.......| ...+|.|+.|+|.|.|..||...
T Consensus 38 ~~~C~--dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~ 79 (143)
T 2bou_A 38 METCD--DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPV 79 (143)
T ss_dssp TCCCE--ECCGGGC----CCCTTEEEEECSSCEEEEECTTEEET
T ss_pred CCcCC--ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccC
Confidence 36786 8999987532234 35789999999999999998753
No 44
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=94.87 E-value=0.014 Score=49.76 Aligned_cols=42 Identities=26% Similarity=0.634 Sum_probs=31.3
Q ss_pred CccCCcchhhhhhh-ccCCCCCCccccCCCceeeecCCCccccccCCeee
Q 010010 405 AICLSEDVDECEEK-LACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCI 453 (520)
Q Consensus 405 ~~C~~~didEC~~~-~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci 453 (520)
..| |+|||... ..|+ ..|.|+.|+|.|.|+.||... ++.+|.
T Consensus 25 ~~C---d~neC~~~~~~C~---~~C~n~~g~y~C~C~~Gy~g~-~g~~C~ 67 (107)
T 2w2n_E 25 GAM---GTNECLDNNGGCS---YVCNDLKIGYECLCPDGFQLV-AQRRCE 67 (107)
T ss_dssp CCB---SCCGGGTGGGGCS---SEEECCSBSCEEECCTTCEEE-TTTEEE
T ss_pred CCC---cCccCcCCCCCCC---CEeEeCCCCeEEECCCCcccc-CCCccc
Confidence 447 79999864 3443 489999999999999998752 345554
No 45
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=94.85 E-value=0.011 Score=50.77 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=35.3
Q ss_pred cCCc-chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeeccC
Q 010010 407 CLSE-DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 407 C~~~-didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
|... |+|||... ...|.. .|.||.|+|.|.|..||....++.+|....
T Consensus 48 C~~~~~~~~C~~~-~~~C~~-~C~n~~g~y~C~C~~G~~~~~~g~~C~~~~ 96 (114)
T 1aut_L 48 CQREVSFLNCSLD-NGGCTH-YCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 96 (114)
T ss_dssp SCEECCSSSSSSG-GGGCSS-EEEECSSSEEEECCTTEEECTTSSCEEECS
T ss_pred cCcCCcCCcCcCC-CCCCCC-EeECCCCCEEeECCCCeeECCCCCccCcCc
Confidence 7521 24578753 334545 899999999999999998877888887643
No 46
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=94.83 E-value=0.0094 Score=56.57 Aligned_cols=56 Identities=25% Similarity=0.575 Sum_probs=34.8
Q ss_pred hhc-cCcCCCCCCccCCcch-hhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeeccC
Q 010010 394 ICA-GFQETTEPAICLSEDV-DECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 394 iC~-gf~~~~~P~~C~~~di-dEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
.|. ||. -..|.. +| |||... .+.|.. .|.|+.|+|.|.|..||.+..++.+|....
T Consensus 66 ~C~~Gf~----G~~Ce~-~i~deC~~~-~~~C~~-~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~ 123 (195)
T 1nfu_B 66 TCLEGFE----GKNCEL-FTRKLCSLD-NGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIPTG 123 (195)
T ss_dssp --------------------CCGGGTG-GGGCSS-EEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred eCCCCce----eccccc-cccccccCC-CCCCCC-EeECCCCCeEEECCCCceeCCCCCccccCC
Confidence 365 885 234863 37 899863 455656 899999999999999998878888897653
No 47
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=94.78 E-value=0.77 Score=41.00 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=57.0
Q ss_pred chhhhHHHHhhhCCCcchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEc
Q 010010 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (520)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y~~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN 377 (520)
.+|+|.+.+-.. . ...+.+=-.++++++|+|..++++|+.++.. .. .++++...-.. .++...||++||
T Consensus 83 ~~~~~~~~lf~~---~-~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~--~~-~v~~~~~~a~~----~gv~gtPt~~i~ 151 (175)
T 3gyk_A 83 KYEAFHWALMGM---S-GKANETGVLRIAREVGLDTEQLQRDMEAPEV--TA-HIAQSMALAQK----LGFNGTPSFVVE 151 (175)
T ss_dssp CHHHHHHHHHTC---S-SCCSHHHHHHHHHHTTCCHHHHHHHTTCHHH--HH-HHHHHHHHHHH----HTCCSSSEEEET
T ss_pred HHHHHHHHHHhc---C-CCCCHHHHHHHHHHcCCCHHHHHHHHhChHH--HH-HHHHHHHHHHH----cCCccCCEEEEC
Confidence 578887765332 1 2334555677899999999999999975531 22 33333332212 347889999999
Q ss_pred CeeeecccChhhHHHHh
Q 010010 378 NRQYRGKLDKGAVLKAI 394 (520)
Q Consensus 378 ~~~yrg~l~~~~vl~~i 394 (520)
|+.+.|..+.+.+...|
T Consensus 152 g~~~~G~~~~~~l~~~i 168 (175)
T 3gyk_A 152 DALVPGFVEQSQLQDAV 168 (175)
T ss_dssp TEEECSCCCHHHHHHHH
T ss_pred CEEeeCCCCHHHHHHHH
Confidence 99999988776655443
No 48
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=94.69 E-value=0.0096 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.571 Sum_probs=26.2
Q ss_pred chhhhhhhccCCC-CCCccc--cCCCceeeecCCCcc
Q 010010 411 DVDECEEKLACQC-PECKCK--DTWGSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~~~c~c-~~~~C~--nt~g~y~C~C~~~~~ 444 (520)
|||||.......| .+.+|. |+.|+|.|.|..||.
T Consensus 2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~ 38 (53)
T 1egf_A 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYS 38 (53)
T ss_dssp EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCC
T ss_pred CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCc
Confidence 6899986422334 346899 999999999999974
No 49
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=94.67 E-value=0.01 Score=58.71 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=32.7
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
|+|||.....-.|.+ .|.||.|+|.|+|..||.+..+..+|..
T Consensus 1 ~~~eC~~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~d~~sC~p 43 (283)
T 3f1s_B 1 AKNECHPERTDGCQH-FCLPGQESYTCSCAQGYRLGEDHKQCVP 43 (283)
T ss_dssp --CCCCSSCSSSCSS-BCCCCTTSCCCBCCTTEEECTTSSCEEE
T ss_pred CCCccCCCCCCCCCC-EeeCCCCCeEecCCCCcccCCCCCcccc
Confidence 578997642223433 6999999999999999998888889987
No 50
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=94.55 E-value=0.012 Score=58.97 Aligned_cols=54 Identities=28% Similarity=0.715 Sum_probs=39.4
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
|. ||.. ..|.. |+|||.....-.|.. .|.|+.|+|.|.|..||....+..+|.+
T Consensus 30 C~~g~~g----~~C~~-~~~eC~~~~~~~C~~-~C~~~~g~~~C~C~~g~~~~~~~~~C~~ 84 (317)
T 3h5c_B 30 CSPGYEG----SNCEL-AKNECHPERTDGCQH-FCLPGQESYTCSCAQGYRLGEDHKQCVP 84 (317)
T ss_dssp CSSSCCS----SSSCC-CSSSCCTTCTTSCSS-EEECCSSSCEEECCTTEECCTTSSCCEE
T ss_pred CCCCCcC----Ccccc-CcccCCCCCCCCCcC-ccccCCCeeEEecccccccccccccccc
Confidence 44 7752 35743 799998632234545 8999999999999999887667777776
No 51
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=94.42 E-value=0.017 Score=51.02 Aligned_cols=55 Identities=25% Similarity=0.585 Sum_probs=33.6
Q ss_pred hhc-cCcCCCCCCccCCcch-hhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeecc
Q 010010 394 ICA-GFQETTEPAICLSEDV-DECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 394 iC~-gf~~~~~P~~C~~~di-dEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
.|. ||. -..|.. +| |||... .+.|.. .|.|+.|+|.|.|..||.+..++.+|...
T Consensus 66 ~C~~G~~----G~~C~~-~i~d~C~~~-~~~C~~-~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~ 122 (134)
T 2vh0_B 66 TCLEGFE----GKNCEL-FTRKLCSLD-NGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIPT 122 (134)
T ss_dssp --------------------CCGGGTG-GGGCSS-EEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred eCCCCcc----CCcccc-CCCCccccC-CCCCCC-EeECCCCCEEEECCCCcEECCCCCccCcC
Confidence 455 774 235762 27 899763 444555 89999999999999999887778888764
No 52
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=94.35 E-value=0.014 Score=51.52 Aligned_cols=33 Identities=45% Similarity=0.909 Sum_probs=18.4
Q ss_pred chhhhhhh-ccCCCCCCccccCCCceeeecCCCcc
Q 010010 411 DVDECEEK-LACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~-~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
|||||... ..|+ ...+|.|+.|+|+|.|..||.
T Consensus 4 dideC~~~~~~C~-~~g~C~~~~g~~~C~C~~Gy~ 37 (135)
T 2vj3_A 4 DVDECSLGANPCE-HAGKCINTLGSFECQCLQGYT 37 (135)
T ss_dssp CCCTTTSSSCSSS-TTCEEEECSSSEEEECCTTEE
T ss_pred ccccccCCCCCCC-CCCEeECCCCCEEEECCCCCc
Confidence 56666532 2333 334666666666666666653
No 53
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.11 E-value=0.015 Score=60.26 Aligned_cols=38 Identities=29% Similarity=0.698 Sum_probs=29.4
Q ss_pred hhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeee
Q 010010 413 DECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCI 453 (520)
Q Consensus 413 dEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci 453 (520)
|||... .|.|.. .|.||.|+|.|.|+.||.+ .++.+|.
T Consensus 1 ~eC~~~-~~~c~~-~C~~~~~~y~C~C~~G~~~-~~~~~C~ 38 (400)
T 3p5b_L 1 NECLDN-NGGCSH-VCNDLKIGYECLCPDGFQL-VAQRRCE 38 (400)
T ss_dssp CCTTTT-GGGCSS-EEEECSSSEEEECCTTEEE-CSSSCEE
T ss_pred CcccCC-CCCCCC-EeECCCCCeEEECCCCCCc-CCCCccc
Confidence 688753 677765 8999999999999999876 3445553
No 54
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=93.33 E-value=0.022 Score=51.21 Aligned_cols=35 Identities=40% Similarity=0.746 Sum_probs=23.7
Q ss_pred ccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCcc
Q 010010 406 ICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 406 ~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
.|. |||||.. .+|+ .+.+|.|+.|+|.|.|..||.
T Consensus 44 ~c~--dideC~~-~pC~-n~g~C~~~~~~y~C~C~~G~~ 78 (146)
T 1x7a_L 44 QYV--DGDQCEP-NPCL-NGGLCKDDINSYECWCQVGFE 78 (146)
T ss_dssp --------CCSS-CSSC-TTCEEEECSSCEEEECCSSEE
T ss_pred cCC--CcCcCCC-CCCC-CCCEeECCCCCEEEecCCCCc
Confidence 476 8999974 3554 446899999999999999975
No 55
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=93.27 E-value=0.02 Score=49.09 Aligned_cols=34 Identities=38% Similarity=0.816 Sum_probs=23.5
Q ss_pred chhhhhhhc---cCC--C-CCCccccCCCceeeecCCCcc
Q 010010 411 DVDECEEKL---ACQ--C-PECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~~---~c~--c-~~~~C~nt~g~y~C~C~~~~~ 444 (520)
|+|||.... .|. | .+.+|.|+.|+|.|.|..||.
T Consensus 5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~ 44 (114)
T 1aut_L 5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWE 44 (114)
T ss_dssp ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEE
T ss_pred ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCc
Confidence 789998642 122 3 446899999999999999975
No 56
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=93.12 E-value=0.033 Score=48.00 Aligned_cols=32 Identities=31% Similarity=0.722 Sum_probs=26.4
Q ss_pred chhhhhhhccCCCCCCccccC-CCceeeecCCCcccc
Q 010010 411 DVDECEEKLACQCPECKCKDT-WGSYECSCGSGLLYM 446 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt-~g~y~C~C~~~~~~~ 446 (520)
|||||.. ..|+ . +|+|+ .|+|+|.|..||...
T Consensus 3 dideC~~-~pC~--~-~C~~~~~g~y~C~C~~Gy~g~ 35 (118)
T 1dx5_I 3 PVDPCFR-ANCE--Y-QCQPLDQTSYLCVCAEGFAPI 35 (118)
T ss_dssp CCCGGGG-CCCS--S-EEEECSSSCEEEECCTTEEEE
T ss_pred ccccCCC-CCCC--C-CCCCCCCCCEEeECCCCcccc
Confidence 7999964 4665 4 89999 999999999998753
No 57
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=93.09 E-value=0.03 Score=49.92 Aligned_cols=32 Identities=38% Similarity=0.721 Sum_probs=26.6
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCcc
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
|||||.. ..|+ .+.+|.|+.|+|.|.|..||.
T Consensus 46 did~C~~-~pC~-n~g~C~~~~g~y~C~C~~G~~ 77 (142)
T 2c4f_L 46 DGDQCAS-SPCQ-NGGSCKDQLQSYICFCLPAFE 77 (142)
T ss_dssp TCCGGGG-CCCC-TTCEEEEETTEEEEECCTTEE
T ss_pred ccCcCcC-CCcC-CCCEEeCCCCCEEeeCCCCcc
Confidence 8999985 3555 447899999999999999974
No 58
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=92.45 E-value=0.023 Score=53.83 Aligned_cols=35 Identities=43% Similarity=0.863 Sum_probs=0.0
Q ss_pred ccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCcc
Q 010010 406 ICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 406 ~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
.|. |||||.. .+|+ .+..|.|+.|+|.|.|..||.
T Consensus 38 ~c~--dideC~~-~pC~-ngg~C~n~~g~y~C~C~~Gf~ 72 (195)
T 1nfu_B 38 KYK--DGDQCET-SPCQ-NQGKCKDGLGEYTCTCLEGFE 72 (195)
T ss_dssp ---------------------------------------
T ss_pred cCC--CCcccCC-CCCC-CCCEeECCCCCeeEeCCCCce
Confidence 476 8999985 3555 446899999999999999975
No 59
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=92.36 E-value=0.044 Score=41.36 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.5
Q ss_pred chhhhhhhccCCCCCCcc-----ccCCCceeeecCCCcc
Q 010010 411 DVDECEEKLACQCPECKC-----KDTWGSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C-----~nt~g~y~C~C~~~~~ 444 (520)
+||||.. .+|+ .+.+| .+..++|.|.|+.||.
T Consensus 7 ~~~eC~s-~pC~-NgGtC~~~~~~d~~~~y~C~C~~g~~ 43 (55)
T 3u7u_G 7 KCAEKEK-TFCV-NGGECFMVKDLSNPSRYLCKCPNEFT 43 (55)
T ss_dssp ECCSTTT-TTSC-TTCEEEEECCC--CCCEEEEECTTEE
T ss_pred cCCCCcC-CCCC-CCCCcCCCCccCCCCCEeEeCCCCCc
Confidence 6899975 4777 66789 5788999999999965
No 60
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=91.73 E-value=0.089 Score=49.80 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeecccChhhHHHHh
Q 010010 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAI 394 (520)
Q Consensus 322 ~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~l~~~~vl~~i 394 (520)
-.+++.++|+|.+++++|+.++. ....|.+..+.+... .+|...||++|||+.+.|..+.+....+|
T Consensus 126 L~~~a~~~Gld~~~~~~~l~s~~--~~~~v~~~~~~a~~~----~GV~GtPtfvvng~~~~G~~~~e~l~~~i 192 (205)
T 3gmf_A 126 FYDFMAARGMDRSTLDRCLSNEA--LAKKLAAETDEAINQ----YNVSGTPSFMIDGILLAGTHDWASLRPQI 192 (205)
T ss_dssp HHHHHHTTTCCHHHHHHHHTCHH--HHHHHHHHHHHHHHH----HCCCSSSEEEETTEECTTCCSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHcCHH--HHHHHHHHHHHHHHH----cCCccCCEEEECCEEEeCCCCHHHHHHHH
Confidence 34566788999999999997542 122233332222011 23788999999999999988877665554
No 61
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=91.72 E-value=0.071 Score=59.04 Aligned_cols=46 Identities=28% Similarity=0.677 Sum_probs=34.6
Q ss_pred hhc-cCcCCCCCCccCCcchhhhhhhc-cCCCCCC---ccccCCCceeee-cCCCcc
Q 010010 394 ICA-GFQETTEPAICLSEDVDECEEKL-ACQCPEC---KCKDTWGSYECS-CGSGLL 444 (520)
Q Consensus 394 iC~-gf~~~~~P~~C~~~didEC~~~~-~c~c~~~---~C~nt~g~y~C~-C~~~~~ 444 (520)
.|. ||. -....|. |||||.... .|+ ... +|+||.|+|+|. |..||.
T Consensus 29 ~C~~Gyt--Gdg~~Ce--DiDEC~~~p~~C~-~gg~~~~CvNt~gsY~C~~C~~Gy~ 80 (634)
T 1yo8_A 29 FCPVGFL--GNGTHCE--DLDECALVPDICF-STSKVPRCVNTQPGFHCLPCPPRYR 80 (634)
T ss_dssp CCCTTBC--SCSSSCC--BCCTTTTSCCCSC-CCSSSCCEEECSSSEEECCCCTTEE
T ss_pred cCCCccC--CCCCCcc--ccccccCCCCccc-CCccccceeeccCceecccCCCCcc
Confidence 366 885 3346797 899997631 255 344 899999999999 999976
No 62
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=91.11 E-value=0.04 Score=48.63 Aligned_cols=35 Identities=43% Similarity=0.863 Sum_probs=0.0
Q ss_pred ccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCcc
Q 010010 406 ICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 406 ~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
.|. |+|||.. ..|+ .+.+|.|+.|+|.|.|..||.
T Consensus 38 ~c~--d~d~C~~-~pC~-n~g~C~~~~~~y~C~C~~G~~ 72 (134)
T 2vh0_B 38 KYK--DGDQCET-SPCQ-NQGKCKDGLGEYTCTCLEGFE 72 (134)
T ss_dssp ---------------------------------------
T ss_pred cCC--CcCcCCC-CCCC-CcCCcccCCCCEEeeCCCCcc
Confidence 366 8999985 3554 446899999999999999975
No 63
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=90.31 E-value=0.082 Score=46.45 Aligned_cols=43 Identities=30% Similarity=0.837 Sum_probs=31.7
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCcc
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
|. ||. -..|.. |||||.. ..|. .+..|.|+.|+|.|.|..||.
T Consensus 84 C~~G~~----G~~C~~-~i~~C~~-~~C~-~~~~C~~~~g~~~C~C~~G~~ 127 (143)
T 4d90_A 84 CPRGFN----GIHCQH-NINECEV-EPCK-NGGICTDLVANYSCECPGEFM 127 (143)
T ss_dssp CCTTEE----STTSCE-ECCTTTT-CCSC-TTCEEEEETTEEEEECCTTCB
T ss_pred CcCCCc----CCCccc-CCCcCCC-CCCC-CCCEeECCCCCeEeECCCCCc
Confidence 44 774 234742 6999974 3565 346899999999999999975
No 64
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=90.18 E-value=0.1 Score=51.83 Aligned_cols=43 Identities=23% Similarity=0.638 Sum_probs=32.1
Q ss_pred chhhhhhhc--cCCCCCCccccCC------CceeeecCCCccccccCCeeec
Q 010010 411 DVDECEEKL--ACQCPECKCKDTW------GSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 411 didEC~~~~--~c~c~~~~C~nt~------g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
+.|+|.... .-.|++ .|.++. ++|.|.|+.|+.+..++.+|+.
T Consensus 266 ~~n~C~~~~~~ng~Cs~-~C~~~p~~~~~~~~~~C~C~~g~~l~~d~~~C~~ 316 (316)
T 1ijq_A 266 GVNWCERTTLSNGGCQY-LCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 316 (316)
T ss_dssp CCCTTSSSSSGGGGCSS-EEEECCCCSTTCCSEEEECCTTCEECTTSSCEEC
T ss_pred ccccccccccCCCCcCc-ccCCCccccCCCCCeEeeCCCCCEECCCCCccCC
Confidence 467787531 223544 699885 6999999999999999999973
No 65
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=89.17 E-value=0.27 Score=45.66 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=45.9
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeecccChhhHHHHhh
Q 010010 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAIC 395 (520)
Q Consensus 322 ~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~l~~~~vl~~iC 395 (520)
-.++.+++|+|.+++.+|+.++.. . ..++++...-.. .++...|+++|||+.+.|....+.+..+|-
T Consensus 126 L~~~a~~~Gld~~~~~~~~~s~~~--~-~~v~~~~~~a~~----~Gv~G~Ptfvi~g~~~~G~~~~~~l~~~l~ 192 (203)
T 2imf_A 126 PALVSEKLGWDRSAFEHFLSSNAA--T-ERYDEQTHAAIE----RKVFGVPTMFLGDEMWWGNDRLFMLESAMG 192 (203)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSHHH--H-HHHHHHHHHHHH----TTCCSSSEEEETTEEEESGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhcCHHH--H-HHHHHHHHHHHH----CCCCcCCEEEECCEEEECCCCHHHHHHHHh
Confidence 456788899999999999875522 2 233333332222 348899999999999999877665555543
No 66
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=89.12 E-value=0.26 Score=45.65 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=44.2
Q ss_pred HHHHHHHHHHh-CCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeecccChhhH
Q 010010 319 KECAEQVIKSL-GVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAV 390 (520)
Q Consensus 319 ~~C~~~v~~~l-~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~l~~~~v 390 (520)
.+=-.+++.++ |+|.+++++|+.++. ....++++...-.. .++...||++|||+.+.|..+.+..
T Consensus 109 ~~~l~~~a~~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~gtPt~vvng~~~~~~~~~e~l 174 (193)
T 3hz8_A 109 PEVLKKWLGEQTAFDGKKVLAAYESPE---SQARADKMQELTET----FQIDGVPTVIVGGKYKVEFADWESG 174 (193)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEEECCSSHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHcCHH---HHHHHHHHHHHHHH----hCCCcCCEEEECCEEEecCCCHHHH
Confidence 44556788889 999999999996552 22334433332212 3478899999999999987654443
No 67
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=88.91 E-value=0.19 Score=44.59 Aligned_cols=53 Identities=23% Similarity=0.535 Sum_probs=37.0
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCC-----CCCccccCCC-ceeeecCCCccccccCCeeeccC
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQC-----PECKCKDTWG-SYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c-----~~~~C~nt~g-~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
|. ||. -..|.. ++++|.. |.| .. .|.|+.| +|.|.|..||.+..++.+|....
T Consensus 72 C~~G~~----G~~C~~-~~~~c~~---c~~~~~~C~~-~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~~ 131 (142)
T 2c4f_L 72 CLPAFE----GRNCET-HKDDQLI---CVNENGGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTPTV 131 (142)
T ss_dssp CCTTEE----STTSCE-EGGGCCS---TTTGGGGCSS-EEECCTTSCCEEECCTTEEECTTSSCEEESS
T ss_pred CCCCcc----CCcccc-Ccccccc---ccCCCCCccC-EeECCCCCCEEEECCCCceECCCCCCCCCCC
Confidence 55 774 234752 3677632 222 22 7999999 99999999998877888887643
No 68
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}
Probab=88.02 E-value=0.31 Score=45.41 Aligned_cols=91 Identities=8% Similarity=0.094 Sum_probs=56.4
Q ss_pred chhhhHHHHhhhCCCcc-hhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEE
Q 010010 298 LWWDYVTDFAIRCPMKE-KKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVI 376 (520)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~-~~y~~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~I 376 (520)
+.|+|....-..-.... +..+.+=-.+++.++|+|.+++.+++.++.. .. .|+++...-.. .++...|+++|
T Consensus 107 ~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~--~~-~v~~~~~~a~~----~Gv~GvPtfvv 179 (202)
T 3fz5_A 107 AATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPAL--KE-TVRKIGEDAVA----RGIFGSPFFLV 179 (202)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHHH--HH-HHHHHHHHHHH----TTCCSSSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHH--HH-HHHHHHHHHHH----CCCCcCCEEEE
Confidence 46667666543211111 1122455566778899999999999865421 22 33333332222 24889999999
Q ss_pred cCeeeecccChhhHHHHhh
Q 010010 377 NNRQYRGKLDKGAVLKAIC 395 (520)
Q Consensus 377 N~~~yrg~l~~~~vl~~iC 395 (520)
||+.+.|....+.+..+|-
T Consensus 180 ~g~~~~G~~~~~~l~~~l~ 198 (202)
T 3fz5_A 180 DDEPFWGWDRMEMMAEWIR 198 (202)
T ss_dssp TTEEEESGGGHHHHHHHHH
T ss_pred CCEEEecCCCHHHHHHHHh
Confidence 9999999877666666654
No 69
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=87.71 E-value=0.6 Score=51.41 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=51.1
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCcceeEEEEehhhHHHHHHHHh
Q 010010 87 GGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS 166 (520)
Q Consensus 87 ~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~dG~~L~~~l~ 166 (520)
...++|+|.+|+ |..|..+++.+||.++|++++..+. .....+|+++|+..+|..|+..+.
T Consensus 279 ~v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~----------------~~~~~lP~~~v~~~~g~~i~~~~~ 339 (621)
T 3vta_A 279 LLKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDY----------------ADSYPLPSSVLDPNDLLATLRYIY 339 (621)
T ss_dssp GTTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSS----------------CCCCSSSEEEECHHHHHHHHHHHH
T ss_pred cccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCc----------------ccccccceEEECHHHHHHHHHHHh
Confidence 467999998754 6789999999999999999875321 123578999999999999999887
Q ss_pred CCC
Q 010010 167 GGE 169 (520)
Q Consensus 167 ~g~ 169 (520)
...
T Consensus 340 ~~~ 342 (621)
T 3vta_A 340 SIR 342 (621)
T ss_dssp HHS
T ss_pred ccC
Confidence 643
No 70
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=87.57 E-value=0.19 Score=55.47 Aligned_cols=43 Identities=21% Similarity=0.536 Sum_probs=33.8
Q ss_pred chhhhhhhccCCCCCCccccCC-CceeeecCCCccccccCCeeecc
Q 010010 411 DVDECEEKLACQCPECKCKDTW-GSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~-g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
++|||.... -.|++ .|.|+. |+|.|.|+.||.+..++.+|...
T Consensus 264 ~~n~C~~~n-g~C~~-~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~ 307 (628)
T 4a0p_A 264 GWNECASSN-GHCSH-LCLAVPVGGFVCGCPAHYSLNADNRTCSAP 307 (628)
T ss_dssp CCCTTTTTG-GGCSS-EEEEETTTEEEEECSTTCEECTTSSCEECC
T ss_pred cceEeccCC-CCcch-hhhcCCCCCeeEEcCCCcEecccCCcCccc
Confidence 478887632 12333 799999 99999999999998899999864
No 71
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=87.35 E-value=0.18 Score=55.90 Aligned_cols=37 Identities=24% Similarity=0.700 Sum_probs=29.8
Q ss_pred CccCCcchhhhhhh-ccCCCCCCccccCC----CceeeecCCCcc
Q 010010 405 AICLSEDVDECEEK-LACQCPECKCKDTW----GSYECSCGSGLL 444 (520)
Q Consensus 405 ~~C~~~didEC~~~-~~c~c~~~~C~nt~----g~y~C~C~~~~~ 444 (520)
..|. |||||... ..|+ ...+|.|+. |+|+|.|+.||.
T Consensus 97 ~~C~--dideC~~~~~pC~-~~~~Cvnt~~~~~GsY~C~C~~Gy~ 138 (634)
T 1yo8_A 97 QVCE--PENPCKDKTHNCH-KHAECIYLGHFSDPMYKCECQTGYA 138 (634)
T ss_dssp CCEE--ECCTTTTTCCCCC-TTEEEEECCTTCSSSEEEEECTTEE
T ss_pred Cccc--ccccccCCCcccc-cCccccccccccccceeeeccCCcc
Confidence 3587 89999864 3554 457899999 999999999975
No 72
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=87.28 E-value=0.28 Score=43.96 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCee
Q 010010 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQ 380 (520)
Q Consensus 319 ~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~ 380 (520)
..=-.++++.+|+|.+++++|+.++.. ...++++...-. +.+|..-||++|||+.
T Consensus 106 ~~~l~~~a~~~Gld~~~~~~~~~s~~~---~~~v~~~~~~a~----~~gv~gTPtfiINGky 160 (184)
T 4dvc_A 106 EQELRQIFLDEGIDAAKFDAAYNGFAV---DSMVHRFDKQFQ----DSGLTGVPAVVVNNRY 160 (184)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSHHH---HHHHHHHHHHHH----HHTCCSSSEEEETTTE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHHH---HHHHHHHHHHHH----HcCCCcCCEEEECCEE
Confidence 444567888999999999999965532 223333332211 1347888999999973
No 73
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=87.21 E-value=0.14 Score=36.89 Aligned_cols=34 Identities=18% Similarity=0.497 Sum_probs=23.7
Q ss_pred chhhhhhhccCCCCCCccccCC--CceeeecCCCcc
Q 010010 411 DVDECEEKLACQCPECKCKDTW--GSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~--g~y~C~C~~~~~ 444 (520)
+||||.+...-.|..-+|.+.. ++|.|.|..||.
T Consensus 2 ~i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~Gyt 37 (46)
T 1k36_A 2 SITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYT 37 (46)
T ss_dssp CEECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCS
T ss_pred ccccCCCCCCCCCCCCEeeccCCCCCEEEECCCCCc
Confidence 5788876422334335898755 799999999975
No 74
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=87.01 E-value=0.32 Score=46.66 Aligned_cols=83 Identities=8% Similarity=0.191 Sum_probs=49.3
Q ss_pred chhhhHHHHhhh-CCC-cchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEE
Q 010010 298 LWWDYVTDFAIR-CPM-KEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLV 375 (520)
Q Consensus 298 ~WW~Yv~~f~~~-C~~-~~~~y~~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~ 375 (520)
++|+|.+..-.. =.. ..+..+.+=-.++.+++|+|.+++++|+.++.. .. .++++...-.. ..+|...||++
T Consensus 103 ~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~--~~-~v~~~~~~a~~---~~GV~GtPtfv 176 (226)
T 3f4s_A 103 DYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKI--MD-KIVNDKSLAIN---KLGITAVPIFF 176 (226)
T ss_dssp HHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHH--HH-HHHHHHHHHHH---HHCCCSSCEEE
T ss_pred HHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHH--HH-HHHHHHHHHHH---HcCCCcCCEEE
Confidence 577777664322 100 000112344556788999999999999965421 22 33333332112 02378889999
Q ss_pred E---cCeeeecccC
Q 010010 376 I---NNRQYRGKLD 386 (520)
Q Consensus 376 I---N~~~yrg~l~ 386 (520)
| ||+.+.|..+
T Consensus 177 v~~~nG~~~~Ga~~ 190 (226)
T 3f4s_A 177 IKLNDDKSYIEHNK 190 (226)
T ss_dssp EEECCTTCCCCGGG
T ss_pred EEcCCCEEeeCCCC
Confidence 9 9999988876
No 75
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=86.75 E-value=0.37 Score=43.85 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeee-ecccChhhH
Q 010010 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY-RGKLDKGAV 390 (520)
Q Consensus 319 ~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~y-rg~l~~~~v 390 (520)
.+=-.++++++|+|..++++|+.++.. ...++++...-.. .+|...||++|||+.+ .|. +.+..
T Consensus 111 ~~~l~~~a~~~Gld~~~~~~~~~~~~~---~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~g~-~~~~l 175 (193)
T 2rem_A 111 PDELAVFYAGYGVQPDRFVATFNGPEV---EKRFQAARAYALK----VRPVGTPTIVVNGRYMVTGH-DFEDT 175 (193)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSHHH---HHHHHHHHHHHHH----HCCSSSSEEEETTTEEECCS-SHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhChHH---HHHHHHHHHHHHH----hCCCCCCeEEECCEEEecCC-CHHHH
Confidence 334566788899999999999865421 2344443332212 2378899999999876 565 54443
No 76
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=86.13 E-value=0.14 Score=47.36 Aligned_cols=47 Identities=26% Similarity=0.669 Sum_probs=34.4
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhh---ccCCCCCCccccCC-----CceeeecCCCccc
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEK---LACQCPECKCKDTW-----GSYECSCGSGLLY 445 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~---~~c~c~~~~C~nt~-----g~y~C~C~~~~~~ 445 (520)
|. ||.-. ....|. |||||... ..|+ ...+|.|+. |+|+|.|..||..
T Consensus 29 C~~G~~g~-~~~~C~--~id~C~~~~~~~~C~-~~~~C~~~~~~~~~g~y~C~C~~G~~g 84 (186)
T 1z1y_A 29 CNEGLVHL-SENTCE--EXNECXXETLGXACG-EFGQCIENPDPAQVNMYXCGCIEGYTL 84 (186)
T ss_dssp ECTTEEEE-ETTEEE--ECCCCSGGGTTSEEE-TTEEEEECSSTTSSCSEEEEECTTEEE
T ss_pred CCCCCccC-CCCccC--CCCcccCCCCCCCCC-CCCEeecCCCCcCCCCEECCCCCCCcc
Confidence 55 88522 234687 89999853 2444 457899999 9999999999864
No 77
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=86.11 E-value=0.22 Score=49.55 Aligned_cols=32 Identities=25% Similarity=0.688 Sum_probs=24.4
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCcc
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
|+|||... +|+ .+..|.|+.++|.|.|..||.
T Consensus 4 d~~~C~~~-pC~-~~g~C~~~~~~~~C~C~~g~~ 35 (317)
T 3h5c_B 4 GGSPCISQ-PCL-HNGSCQDSIWGYTCTCSPGYE 35 (317)
T ss_dssp --CCTTSC-CCT-TTCCCCCCSSSCCCCCSSSCC
T ss_pred cCCcCCCC-CCC-CCCEeECCCCCeEEECCCCCc
Confidence 78899753 554 446899999999999999975
No 78
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=85.93 E-value=0.4 Score=43.74 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=51.8
Q ss_pred chhhhHHHHhhhCCC-cchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEE
Q 010010 298 LWWDYVTDFAIRCPM-KEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVI 376 (520)
Q Consensus 298 ~WW~Yv~~f~~~C~~-~~~~y~~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~I 376 (520)
++|+|.+..-..=.. ..+..+.+=-.+++.++|+|.+++.+|+.++. ....++++...-.. .++...||++|
T Consensus 86 ~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~gtPt~~v 158 (192)
T 3h93_A 86 VEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFA---IKGQMEKAKKLAMA----YQVTGVPTMVV 158 (192)
T ss_dssp CCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHH---HHHHHHHHHHHHHH----HTCCSSSEEEE
T ss_pred CHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHH---HHHHHHHHHHHHHH----hCCCCCCeEEE
Confidence 467776654321100 11122355667788999999999999996553 12234443332212 23788999999
Q ss_pred cCeeee---cccChhhH
Q 010010 377 NNRQYR---GKLDKGAV 390 (520)
Q Consensus 377 N~~~yr---g~l~~~~v 390 (520)
||+.+. |-.+.+..
T Consensus 159 ng~~~~~~~G~~~~e~l 175 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEET 175 (192)
T ss_dssp TTTEEEEHHHHTSHHHH
T ss_pred CCEEEecccccCCHHHH
Confidence 999876 66555443
No 79
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=85.68 E-value=0.25 Score=43.25 Aligned_cols=43 Identities=35% Similarity=0.863 Sum_probs=30.6
Q ss_pred hc-cCcCCCCCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCcc
Q 010010 395 CA-GFQETTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 395 C~-gf~~~~~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
|. ||.- ..|.. |+|||.. ..|+ ...+|.|+.|+|.|.|..||.
T Consensus 32 C~~Gy~G----~~C~~-~~~~C~~-~~C~-~~~~C~~~~g~~~C~C~~G~~ 75 (135)
T 2vj3_A 32 CLQGYTG----PRCEI-DVNECVS-NPCQ-NDATCLDQIGEFQCICMPGYE 75 (135)
T ss_dssp CCTTEES----TTSCE-ECCTTTT-CCCC-SSCEEEECSSCEEEECCTTEE
T ss_pred CCCCCcC----Ccccc-cCccCCC-CCCC-CCCEEeCCCCCceeeCCCCCc
Confidence 55 7741 24532 6899975 3554 346899999999999999975
No 80
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=85.65 E-value=0.23 Score=45.72 Aligned_cols=54 Identities=24% Similarity=0.634 Sum_probs=35.6
Q ss_pred hc-cCcCCC-CCCccCCcchhhhhhhccCCCCCCccccCCCceeeecCCCccccccCC
Q 010010 395 CA-GFQETT-EPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHD 450 (520)
Q Consensus 395 C~-gf~~~~-~P~~C~~~didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~ 450 (520)
|. ||.-.. ....|...|+|||.. .|.-....|.|+.|+|+|.|..||.....+.
T Consensus 120 C~~Gy~g~~~~~~~C~~~~~~~C~~--~C~~~~~~C~n~~g~y~C~C~~G~~g~~~~~ 175 (186)
T 1z1y_A 120 CAIGXVPNPEDEXXCTXTGETACQL--XCNTDNEVCXNVEGVYXCQCMEGFTFDXEXN 175 (186)
T ss_dssp ECTEEEEETTTTTEEEEEECCCCCC--CCCTTTEEEEEETTEEEEEECTTCEEETTTT
T ss_pred CCCCCcccCCCCCcceEcCCCcccc--cccccCcceecCCCCeeeECCCCCccCcccc
Confidence 65 775211 236787323489974 5511457899999999999999987644433
No 81
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=84.87 E-value=0.84 Score=43.89 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=56.8
Q ss_pred chhhhHHHHhhhCCCcc-hhhh-HHHHHHHHHHhCCChhhcccccCC-ccCcccchHHHHHHHHHhcCCCCCCeEEecEE
Q 010010 298 LWWDYVTDFAIRCPMKE-KKYT-KECAEQVIKSLGVDLKKVDECVGD-PEADVDNQVLKTEQDAQIGKGSRGDVTILPTL 374 (520)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~-~~y~-~~C~~~v~~~l~id~~kv~~C~~~-~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl 374 (520)
+.|.|....-..-.... +.-+ .+=-..++.++|+|.+++.+|+.+ +. ....++++...-.. .++...|++
T Consensus 115 ~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~s~~~---~~~~v~~~~~~a~~----~Gv~GvPtf 187 (239)
T 3gl5_A 115 RHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAA---YADEVRADEREAAQ----LGATGVPFF 187 (239)
T ss_dssp CHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHHHHCTTT---THHHHHHHHHHHHH----TTCCSSSEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHcCcHh---HHHHHHHHHHHHHH----CCCCeeCeE
Confidence 46666666433211111 1222 344567888899999999999976 42 22233443332222 348899999
Q ss_pred EEcCe-eeecccChhhHHHHhhccC
Q 010010 375 VINNR-QYRGKLDKGAVLKAICAGF 398 (520)
Q Consensus 375 ~IN~~-~yrg~l~~~~vl~~iC~gf 398 (520)
+|||+ .+.|..+.+....+|=...
T Consensus 188 vv~g~~~v~Ga~~~e~~~~~i~~~~ 212 (239)
T 3gl5_A 188 VLDRAYGVSGAQPAEVFTQALTQAW 212 (239)
T ss_dssp EETTTEEEESSCCHHHHHHHHHHHH
T ss_pred EECCcEeecCCCCHHHHHHHHHHHH
Confidence 99997 6788877776655554433
No 82
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=84.10 E-value=0.26 Score=40.43 Aligned_cols=37 Identities=27% Similarity=0.687 Sum_probs=28.0
Q ss_pred ccCCcchhhhhhhccCCCCCCccccCC--CceeeecCCCcc
Q 010010 406 ICLSEDVDECEEKLACQCPECKCKDTW--GSYECSCGSGLL 444 (520)
Q Consensus 406 ~C~~~didEC~~~~~c~c~~~~C~nt~--g~y~C~C~~~~~ 444 (520)
.|...|+|||.. .+|+ .+.+|.|+. |+|.|.|+.||.
T Consensus 42 ~C~~~~~~~C~~-~pC~-ngg~C~~~~~~~~~~C~C~~G~~ 80 (91)
T 1tpg_A 42 QCHSVPVKSCSE-PRCF-NGGTCQQALYFSDFVCQCPEGFA 80 (91)
T ss_dssp BCCEECEEECSS-CCSC-TTCEEEEESSSSCEEEECCTTCB
T ss_pred ccccCcCCcccC-CCCC-CCCEeecCCCCCCeEeECCCCCc
Confidence 674226899975 3554 456899998 999999999974
No 83
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=83.70 E-value=0.63 Score=42.41 Aligned_cols=63 Identities=17% Similarity=0.091 Sum_probs=41.0
Q ss_pred HHHHHHHHHh-CCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCee-eecccChhh
Q 010010 320 ECAEQVIKSL-GVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQ-YRGKLDKGA 389 (520)
Q Consensus 320 ~C~~~v~~~l-~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~-yrg~l~~~~ 389 (520)
+=-.++++++ |+|..++.+|+.++. ....++++...-.. .++...||++|||+. ..|..+.+.
T Consensus 106 ~~l~~~a~~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~g~~~~~~ 170 (195)
T 2znm_A 106 SVAGKWALSQKGFDGKKLMRAYDSPE---AAAAALKMQKLTEQ----YRIDSTPTVIVGGKYRVIFNNGFDG 170 (195)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEEECCCSHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhcCHH---HHHHHHHHHHHHHH----cCCCCCCeEEECCEEEEcCCCCHHH
Confidence 3345677788 999999999986542 22344443332212 347889999999985 667644433
No 84
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=83.53 E-value=0.47 Score=43.27 Aligned_cols=38 Identities=29% Similarity=0.717 Sum_probs=28.7
Q ss_pred CccCCcchhhhhhhccCCCCCCccccC-CCceeeecCCCcc
Q 010010 405 AICLSEDVDECEEKLACQCPECKCKDT-WGSYECSCGSGLL 444 (520)
Q Consensus 405 ~~C~~~didEC~~~~~c~c~~~~C~nt-~g~y~C~C~~~~~ 444 (520)
..|.. |+|||.....|+ .+.+|.|+ .|+|+|.|..||.
T Consensus 125 ~~C~~-~~~~C~~~~~C~-~~g~C~~~~~~~~~C~C~~G~~ 163 (169)
T 2vj2_A 125 QLCDK-DLNYCGTHQPCL-NGGTCSNTGPDKYQCSCPEGYS 163 (169)
T ss_dssp TTTCE-ESCHHHHTCCCC-TTCEEEECSTTCEEEECCTTCC
T ss_pred CcccC-CCCCCCCCCCCC-CCCEEcCCCCCCcEeECCCCCc
Confidence 34743 699998634444 44789997 8999999999975
No 85
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=82.56 E-value=0.5 Score=33.50 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.7
Q ss_pred CCCccc--cCCCceeeecCCCcc
Q 010010 424 PECKCK--DTWGSYECSCGSGLL 444 (520)
Q Consensus 424 ~~~~C~--nt~g~y~C~C~~~~~ 444 (520)
.+.+|. ++.++|.|.|..||.
T Consensus 13 ngg~C~~~~~~~~~~C~C~~G~~ 35 (45)
T 1a3p_A 13 NGGVXMHIESLDSYTCNCVIGYS 35 (45)
T ss_dssp SSCEEEECTTTSSEEEECCTTEE
T ss_pred CCCEEEeecCCCCEEEEcCCCCc
Confidence 346787 899999999999974
No 86
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=82.13 E-value=0.49 Score=53.72 Aligned_cols=40 Identities=28% Similarity=0.665 Sum_probs=28.9
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeee
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCI 453 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci 453 (520)
++|||... .+.|.. .|.||.|+|.|.|+.||.+ .++.+|.
T Consensus 311 ~~~~C~~~-~~~C~~-~C~~~~~~y~C~C~~Gy~l-~~g~~C~ 350 (791)
T 3m0c_C 311 GTNECLDN-NGGCSH-VCNDLKIGYECLCPDGFQL-VAQRRCE 350 (791)
T ss_dssp SCCSTTTG-GGGCSS-EEEECSBSEEEECCTTCEE-ETTTEEE
T ss_pred cccccccc-ccCccc-cccCCCCCcccCCCCCCcc-CCCCccc
Confidence 47788653 344543 7999999999999999875 4445553
No 87
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=82.05 E-value=0.49 Score=52.73 Aligned_cols=39 Identities=28% Similarity=0.690 Sum_probs=28.7
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCee
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTC 452 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~C 452 (520)
|+|||... ...|. ..|.||.|+|.|.|..||.+ .++.+|
T Consensus 293 ~~~eC~~~-~~~C~-~~C~~~~~~~~C~C~~G~~~-~~~~~C 331 (699)
T 1n7d_A 293 GTNECLDN-NGGCS-HVCNDLKIGYECLCPDGFQL-VAQRRC 331 (699)
T ss_dssp CCCCTTSS-TTTSC-TTCCCCTTCCCCCCCSSSCC-CSSSCC
T ss_pred cccccccc-ccCcC-CCcccCCCCcEEeCCCCeEc-CCCCcc
Confidence 58999864 23343 37999999999999999876 334444
No 88
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=81.76 E-value=0.66 Score=35.29 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=23.4
Q ss_pred hhhhhhhccCCCCCCcccc-----CCCceeeecCCCcc
Q 010010 412 VDECEEKLACQCPECKCKD-----TWGSYECSCGSGLL 444 (520)
Q Consensus 412 idEC~~~~~c~c~~~~C~n-----t~g~y~C~C~~~~~ 444 (520)
-|||.. .+|+ .+.+|.+ +.++|.|.|..||.
T Consensus 6 c~~C~~-~pC~-ngG~C~~~~~~~~~~~y~C~C~~Gf~ 41 (63)
T 1hae_A 6 CAEKEK-TFCV-NGGECFMVKDLSNPSRYLCKCQPGFT 41 (63)
T ss_dssp CCHHHH-TTSC-TTCEEEEEESSSSSCCEEEECCTTEE
T ss_pred cCCCCC-CcCC-CCcEEecCCccCCCCCEEEECCCCCc
Confidence 467864 3555 4468986 88999999999975
No 89
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=81.37 E-value=0.87 Score=41.57 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeecc
Q 010010 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGK 384 (520)
Q Consensus 319 ~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~ 384 (520)
.+=-.++++++|+|.+++++|+.++.. ...++++...-.. .++...||++|||+.+.+.
T Consensus 107 ~~~l~~~a~~~Gld~~~~~~~~~s~~~---~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~g 165 (195)
T 3hd5_A 107 KKAMGEWAASQGVDRAKFDSVFDSFSV---QTQVQRASQLAEA----AHIDGTPAFAVGGRYMTSP 165 (195)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCHHH---HHHHHHHHHHHHH----TTCCSSSEEEETTTEEECT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHcCHHH---HHHHHHHHHHHHH----hCCCcCceEEECCEEEeCc
Confidence 445567888999999999999965432 2234443332222 3478899999999988763
No 90
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=80.36 E-value=0.61 Score=51.23 Aligned_cols=41 Identities=24% Similarity=0.574 Sum_probs=32.5
Q ss_pred hhhhhhhccCCCCCCccccCCCceeeecCCCccccccCCeeec
Q 010010 412 VDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 412 idEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
.|+|.... -.|++ .|.++.|+|.|.|+.||.+..++.+|+.
T Consensus 578 ~~~C~~~n-g~C~~-~C~~~~~~~~C~C~~g~~l~~d~~~C~~ 618 (619)
T 3s94_A 578 SNPCAEEN-GGCSH-LCLYRPQGLRCACPIGFELISDMKTCIV 618 (619)
T ss_dssp CCGGGSGG-GGCSS-EEEEETTEEEEECCTTCEECSSTTCEEC
T ss_pred cccCCCCC-CChhH-hhccCCCCeEEECCCCCEECCCCCcCCC
Confidence 57786532 22433 6999999999999999999889999974
No 91
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=79.78 E-value=1.8 Score=39.75 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHHHHHHHh-CCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeee
Q 010010 319 KECAEQVIKSL-GVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY 381 (520)
Q Consensus 319 ~~C~~~v~~~l-~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~y 381 (520)
.+=-.+++.++ |+|.+++++|+.++.. ...++++...-.. .++...||++|||+..
T Consensus 100 ~~~l~~~a~~~~Gld~~~~~~~~~s~~~---~~~v~~~~~~a~~----~gv~GtPt~~vng~~~ 156 (189)
T 3l9v_A 100 PDDVRRVFMSATGISRGEYDRSIKSPAV---NDMVALQERLFKE----YGVRGTPSVYVRGRYH 156 (189)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHTTSHHH---HHHHHHHHHHHHH----TTCCSSSEEEETTTEE
T ss_pred HHHHHHHHHHccCCCHHHHHHHHhhHHH---HHHHHHHHHHHHH----hCCCccCEEEECCEEE
Confidence 45567788888 9999999999975532 2334443332222 3478899999999754
No 92
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=78.01 E-value=1.1 Score=41.32 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeee
Q 010010 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYR 382 (520)
Q Consensus 319 ~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yr 382 (520)
.+=-.++++++|+|.+++++|+.++.. ...++++...-.. .+|...||++|||+..-
T Consensus 107 ~~~L~~~a~~~Gld~~~~~~~~~s~~~---~~~v~~~~~~a~~----~gv~gtPtfvvnG~~~v 163 (191)
T 3l9s_A 107 AADIRKVFVDAGVKGEDYDAAWNSFVV---KSLVAQQEKAAAD----LQLQGVPAMFVNGKYQI 163 (191)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSHHH---HHHHHHHHHHHHH----TTCCSSSEEEETTTEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhCHHH---HHHHHHHHHHHHH----hCCcccCEEEECCEEEE
Confidence 444677888999999999999965532 2344443332212 34788999999998654
No 93
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=77.20 E-value=4 Score=29.27 Aligned_cols=29 Identities=14% Similarity=-0.113 Sum_probs=13.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010010 459 SEASWGFVWMVILGLAATGVAGYAFYKYR 487 (520)
Q Consensus 459 ~~~~~~~~~~v~~~~~~~~~~~~~~yk~~ 487 (520)
+..++++..+|.+.++++++++.++|.+|
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 34444444444433334444445566655
No 94
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=76.87 E-value=1.9 Score=39.83 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=51.5
Q ss_pred chhhhHHHHhhhCCCcchhh-hHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEE
Q 010010 298 LWWDYVTDFAIRCPMKEKKY-TKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVI 376 (520)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y-~~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~I 376 (520)
+.|+|....-..-....... +.+=-.++.+++|+|.+++.+|+.++.. ...++++...-.. .++...||++|
T Consensus 110 ~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~---~~~v~~~~~~a~~----~gv~g~Pt~~i 182 (216)
T 2in3_A 110 KVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQSDEA---KQRTLAGFQRVAQ----WGISGFPALVV 182 (216)
T ss_dssp GHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHHH---HHHHHHHHHHHHH----TTCCSSSEEEE
T ss_pred hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchHH---HHHHHHHHHHHHH----cCCcccceEEE
Confidence 46777765433111011111 1333467788899999999999865421 1223333322112 34889999988
Q ss_pred --cCee---eecccChhhHHHHh
Q 010010 377 --NNRQ---YRGKLDKGAVLKAI 394 (520)
Q Consensus 377 --N~~~---yrg~l~~~~vl~~i 394 (520)
||+. +.|..+.+.+...|
T Consensus 183 ~~~G~~~~~~~G~~~~~~l~~~l 205 (216)
T 2in3_A 183 ESGTDRYLITTGYRPIEALRQLL 205 (216)
T ss_dssp EETTEEEEEESSCCCHHHHHHHH
T ss_pred EECCEEEEeccCCCCHHHHHHHH
Confidence 9985 67766665544443
No 95
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=76.34 E-value=1.1 Score=44.79 Aligned_cols=42 Identities=21% Similarity=0.570 Sum_probs=30.2
Q ss_pred hhhhhhccCCCCCCccccCCC--ceeeecCCCccccccCCeeeccC
Q 010010 413 DECEEKLACQCPECKCKDTWG--SYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 413 dEC~~~~~c~c~~~~C~nt~g--~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
|+|... .-.|++ .|.++.+ +|.|.|+.|+.+..++.+|.+..
T Consensus 268 n~C~~~-ng~Cs~-~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~~~ 311 (318)
T 3sov_A 268 NPCGID-NGGCSH-LCLMSPVKPFYQCACPTGVKLLENGKTCKDGN 311 (318)
T ss_dssp CTTTTT-GGGCSS-EEEECSSTTSEEEECSTTCCBCTTSSCBCC--
T ss_pred cccccC-CCCcce-EEecCCCCCCeEEECCCCCEECCCCCCCCCCC
Confidence 556542 223444 5888876 79999999999999999998743
No 96
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=75.38 E-value=0.76 Score=40.09 Aligned_cols=32 Identities=28% Similarity=0.726 Sum_probs=24.0
Q ss_pred chhhhhhhccCCCCCCccc-------cCCCceeeecCCCcc
Q 010010 411 DVDECEEKLACQCPECKCK-------DTWGSYECSCGSGLL 444 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~-------nt~g~y~C~C~~~~~ 444 (520)
++|+|.. ..|+ .+.+|. |+.|+|.|.|..||.
T Consensus 51 ~~~~C~~-~~C~-~~g~C~~~~~~~~~~~~~~~C~C~~G~~ 89 (143)
T 4d90_A 51 SAGPCTP-NPCH-NGGTCEISEAYRGDTFIGYVCKCPRGFN 89 (143)
T ss_dssp CCCTTSS-CCCC-TTCEEEECCCEETTEECCEEEECCTTEE
T ss_pred cCCcCCC-CCCC-CCCEecCCCccccCCCCCeEeECcCCCc
Confidence 5677754 2444 346888 999999999999974
No 97
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=74.28 E-value=0.56 Score=41.82 Aligned_cols=24 Identities=38% Similarity=0.989 Sum_probs=19.4
Q ss_pred cCCCCCCccccCCCceeeecCCCcc
Q 010010 420 ACQCPECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 420 ~c~c~~~~C~nt~g~y~C~C~~~~~ 444 (520)
.|+ ....|.|+.++|.|.|..||.
T Consensus 126 ~C~-~~g~C~~~~~~~~c~C~~g~~ 149 (162)
T 1g1s_A 126 SCS-KQGECLETIGNYTCSCYPGFY 149 (162)
T ss_dssp GGG-GSEEEEECSSSEEEEECTTEE
T ss_pred CCC-CCCEEecCCCCceEeCCCCCc
Confidence 444 345799999999999999975
No 98
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=72.35 E-value=2.3 Score=38.89 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCC-ChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeee---ecccChhhHHH
Q 010010 319 KECAEQVIKSLGV-DLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY---RGKLDKGAVLK 392 (520)
Q Consensus 319 ~~C~~~v~~~l~i-d~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~y---rg~l~~~~vl~ 392 (520)
.+=-.+++.++|+ |.+++++++.+ . ..+ .++++...-.. .+|...|+++|||+.. .|-.+.+....
T Consensus 108 ~~~L~~~a~~~Gl~d~~~~~~~~~~-~--~~~-~v~~~~~~a~~----~gv~GtPtfvvng~~~v~~~Ga~~~e~~~~ 177 (185)
T 3feu_A 108 QEAYSKAFTSRGLVSPYDFNEEQRD-T--LIK-KVDNAKMLSEK----SGISSVPTFVVNGKYNVLIGGHDDPKQIAD 177 (185)
T ss_dssp HHHHHHHHHTTTCCCGGGCCHHHHH-H--HHH-HHHHHHHHHHH----HTCCSSSEEEETTTEEECGGGCSSHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH-H--HHH-HHHHHHHHHHH----cCCCccCEEEECCEEEEecCCCCCHHHHHH
Confidence 4456678888998 99999999753 2 122 33333332212 3478899999999853 57666554433
No 99
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=72.16 E-value=1.6 Score=39.39 Aligned_cols=59 Identities=12% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeee-e--cccChhhHH
Q 010010 326 IKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY-R--GKLDKGAVL 391 (520)
Q Consensus 326 ~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~y-r--g~l~~~~vl 391 (520)
++++|+|.+++++|+.++.. ...++++...- .+.++...||++|||+.. . |-.+.+...
T Consensus 125 a~~~Gld~~~~~~~~~~~~~---~~~v~~~~~~a----~~~gv~gtPt~~ing~~~~~~~g~~~~~~l~ 186 (195)
T 3c7m_A 125 LDAAGMSQADFEAALKEPAV---QETLEKWKASY----DVAKIQGVPAYVVNGKYLIYTKSIKSIDAMA 186 (195)
T ss_dssp HHHHTCCHHHHHHHHTSHHH---HHHHHHGGGHH----HHHHHHCSSEEEETTTEEECGGGCCCHHHHH
T ss_pred HHHcCCCHHHHHHHHcChHH---HHHHHHHHHHH----HHcCCCccCEEEECCEEEeccCCCCCHHHHH
Confidence 88999999999999865421 12333322211 113478889999999864 2 444444433
No 100
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=70.42 E-value=1.6 Score=47.59 Aligned_cols=36 Identities=28% Similarity=0.710 Sum_probs=27.6
Q ss_pred hhhhhhhccCCCCCCcccc-CCCceeeecC-CCccccccCCeee
Q 010010 412 VDECEEKLACQCPECKCKD-TWGSYECSCG-SGLLYMQEHDTCI 453 (520)
Q Consensus 412 idEC~~~~~c~c~~~~C~n-t~g~y~C~C~-~~~~~~~~~~~Ci 453 (520)
+|||.. .+|+ .+..|.+ .+++|.|.|. .||. +..|-
T Consensus 2 ~d~C~~-~PC~-ngG~C~~~~~~~y~C~C~~~G~~----G~~Ce 39 (553)
T 1q4g_A 2 VNPCCY-YPCQ-HQGICVRFGLDRYQCDCTRTGYS----GPNCT 39 (553)
T ss_dssp CCGGGG-CCCC-TTCEEEEETTTEEEEECTTSSEE----TTTTC
T ss_pred CCcCCC-CCCC-CCCCcCCCCCCceEeeCCCCCcC----CCCCC
Confidence 688975 4666 4568999 9999999999 7864 45564
No 101
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=67.90 E-value=3.6 Score=38.22 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=36.9
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeec
Q 010010 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (520)
Q Consensus 322 ~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg 383 (520)
-.+++.++|+|.+++++|+.++. ....++++...--. .++...|+++|||+.+..
T Consensus 9 L~~~a~~~Gld~~~~~~~l~s~~---~~~~v~~~~~~a~~----~gi~gvP~fvingk~~~~ 63 (197)
T 1un2_A 9 IRDVFINAGIKGEEYDAAWNSFV---VKSLVAQQEKAAAD----VQLRGVPAMFVNGKYQLN 63 (197)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEEEC
T ss_pred HHHHHHHcCCCHHHHHHHHhCHH---HHHHHHHHHHHHHH----cCCCcCCEEEEcceEecC
Confidence 35678889999999999986542 22344444332212 236679999999987653
No 102
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=67.64 E-value=6.6 Score=36.77 Aligned_cols=95 Identities=9% Similarity=0.009 Sum_probs=55.7
Q ss_pred chhhhHHHHhhhCCCcc-hhhhHHHHHHHHHHhCCC---hhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecE
Q 010010 298 LWWDYVTDFAIRCPMKE-KKYTKECAEQVIKSLGVD---LKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPT 373 (520)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~-~~y~~~C~~~v~~~l~id---~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Pt 373 (520)
.+|+|.+..-..-.... +.-+.+=-.+++.++|+| .+++.+|+.++. ....++++...-.. .++...|+
T Consensus 113 ~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~G~Pt 185 (226)
T 1r4w_A 113 MLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTEL---VKSKLRETTGAACK----YGAFGLPT 185 (226)
T ss_dssp GHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHH---HHHHHHHHHHHHHH----TTCCSSCE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCchhHHHHHHHcCCHH---HHHHHHHHHHHHHH----CCCCCCCE
Confidence 35777765432110011 111234456778889995 557778875442 12234433332222 34889999
Q ss_pred EEEc----CeeeecccChhhHHHHhhccCc
Q 010010 374 LVIN----NRQYRGKLDKGAVLKAICAGFQ 399 (520)
Q Consensus 374 l~IN----~~~yrg~l~~~~vl~~iC~gf~ 399 (520)
++|| +..+.|....+.+..+|=..+.
T Consensus 186 fvv~~~g~~~~~~G~~~~~~l~~~l~~~~~ 215 (226)
T 1r4w_A 186 TVAHVDGKTYMLFGSDRMELLAYLLGEKWM 215 (226)
T ss_dssp EEEEETTEEEEEESTTCHHHHHHHHTCCCC
T ss_pred EEEeCCCCcCceeCCCcHHHHHHHhcCccc
Confidence 9999 8899998777777777755543
No 103
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=65.78 E-value=3.5 Score=38.09 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=43.0
Q ss_pred hhhhHHHHhhhCCCc-chhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEc
Q 010010 299 WWDYVTDFAIRCPMK-EKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (520)
Q Consensus 299 WW~Yv~~f~~~C~~~-~~~y~~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN 377 (520)
.|+|....-..-... .+..+.+=-.++++++|+|.+++.+|+.++. ....++++...-.. .++...|+++||
T Consensus 104 ~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~g~Pt~~v~ 176 (208)
T 3kzq_A 104 YEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTL---LEGVFQDQLSLAKS----LGVNSYPSLVLQ 176 (208)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHHHH----cCCCcccEEEEE
Confidence 466766654321111 1122345567788899999999999986542 12233333332212 347889999997
Q ss_pred C
Q 010010 378 N 378 (520)
Q Consensus 378 ~ 378 (520)
+
T Consensus 177 ~ 177 (208)
T 3kzq_A 177 I 177 (208)
T ss_dssp E
T ss_pred E
Confidence 4
No 104
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=64.86 E-value=2 Score=41.72 Aligned_cols=28 Identities=32% Similarity=0.765 Sum_probs=24.5
Q ss_pred ccccCCCceeeecCCCccccccCCeeec
Q 010010 427 KCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 427 ~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
.|.|+.|+|.|.|..||.+..++.+|..
T Consensus 137 ~C~n~~g~~~C~C~~Gy~l~~d~~~C~~ 164 (278)
T 3dem_A 137 YCHNYIGGYYCSCRFGYILHTDNRTCRV 164 (278)
T ss_dssp EEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred CcCCccCCcEEEeCCcceeccCCCCCcc
Confidence 4999999999999999988877777764
No 105
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=64.23 E-value=7.2 Score=29.16 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 010010 461 ASWGFVWMVILGLAATGVAGYAFYK 485 (520)
Q Consensus 461 ~~~~~~~~v~~~~~~~~~~~~~~yk 485 (520)
.-|++++.++++++++++..|+.||
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488888888888888888888887
No 106
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=63.80 E-value=1.8 Score=35.33 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=22.2
Q ss_pred chhhhhhhccCCCCCCccccCCCceeeecCCCcccc
Q 010010 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYM 446 (520)
Q Consensus 411 didEC~~~~~c~c~~~~C~nt~g~y~C~C~~~~~~~ 446 (520)
|+|||... .|.|+.++|.|.|..||...
T Consensus 16 ~~~~c~~~--------pC~n~~~~y~C~C~~G~~~C 43 (91)
T 1tpg_A 16 QQHQSWLR--------PVLRSNRVEYCWCNSGRAQC 43 (91)
T ss_dssp CSSCEEEE--------ECSSSSCEEEEECSSSCCBC
T ss_pred CCCcccCC--------ccccCCCCcEeECCCCCccc
Confidence 58888542 47899999999999998643
No 107
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.02 E-value=7.7 Score=29.00 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=21.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 010010 460 EASWGFVWMVILGLAATGVAGYAFYK 485 (520)
Q Consensus 460 ~~~~~~~~~v~~~~~~~~~~~~~~yk 485 (520)
..-|.+++.++++++++.+..|..||
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888888888888888888887
No 108
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=61.52 E-value=9.2 Score=27.09 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=21.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 010010 460 EASWGFVWMVILGLAATGVAGYAFYK 485 (520)
Q Consensus 460 ~~~~~~~~~v~~~~~~~~~~~~~~yk 485 (520)
..-|.+++.++++++++.+..|..||
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888888888888888888887
No 109
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=59.35 E-value=22 Score=28.45 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 010010 463 WGFVWMVILGLAATGVAGYAFYKYR 487 (520)
Q Consensus 463 ~~~~~~v~~~~~~~~~~~~~~yk~~ 487 (520)
|.+++.|+++++++|++.+.++|..
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666777767777733
No 110
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=54.60 E-value=12 Score=35.52 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEc--C--eeeecccChhhHHHHh
Q 010010 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN--N--RQYRGKLDKGAVLKAI 394 (520)
Q Consensus 319 ~~C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN--~--~~yrg~l~~~~vl~~i 394 (520)
.+=-.+++.++|+|.+++++-......+.....|+++...-... ++...|+++|| | ..|.|.-.-+.+..++
T Consensus 135 ~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~~~a~~~----Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L 210 (234)
T 3rpp_A 135 PQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRY----GAFGLPITVAHVDGQTHMLFGSDRMELLAHLL 210 (234)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHT----TCSSSCEEEEEETTEEEEEESSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHHHHHHHc----CCCCCCEEEEeCCCCcCceeCccCHHHHHHHh
Confidence 45667788899999965554442211112223333333322222 48899999996 6 6788987766676666
Q ss_pred hccCc
Q 010010 395 CAGFQ 399 (520)
Q Consensus 395 C~gf~ 399 (520)
=..+.
T Consensus 211 ~~~~~ 215 (234)
T 3rpp_A 211 GEKWM 215 (234)
T ss_dssp TCCCC
T ss_pred ccccC
Confidence 34444
No 111
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=54.23 E-value=5 Score=43.89 Aligned_cols=42 Identities=21% Similarity=0.566 Sum_probs=30.1
Q ss_pred hhhhhhhccCCCCCCccccCC--CceeeecCCCccccccCCeeecc
Q 010010 412 VDECEEKLACQCPECKCKDTW--GSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 412 idEC~~~~~c~c~~~~C~nt~--g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
.|+|... .-.|+. .|.++. ++|.|.|+.||.+..++.+|...
T Consensus 272 ~n~C~~~-ng~Cs~-lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~ 315 (619)
T 3s94_A 272 TNPCGID-NGGCSH-LCLMSPVKPFYQCACPTGVKLLENGKTCKDG 315 (619)
T ss_dssp CCTTTTT-GGGCSS-EEEECSSTTSEEEECCTTCCBCTTSSCBCSS
T ss_pred cccccCC-CCcccc-eEECCCCCCCceEeCCchheecccCcccCCC
Confidence 3556542 122333 588877 47999999999998899999863
No 112
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=53.31 E-value=3.7 Score=44.97 Aligned_cols=31 Identities=26% Similarity=0.813 Sum_probs=23.5
Q ss_pred hhhhhhhccCCCCCCcccc-CCCceeeecC-CCcc
Q 010010 412 VDECEEKLACQCPECKCKD-TWGSYECSCG-SGLL 444 (520)
Q Consensus 412 idEC~~~~~c~c~~~~C~n-t~g~y~C~C~-~~~~ 444 (520)
||||.. .+|+ .+..|.+ .+++|.|.|. .||.
T Consensus 1 vd~C~s-~PC~-ngG~C~~~~~~~y~C~C~~~G~~ 33 (587)
T 3nt1_A 1 ANPCCS-NPCQ-NRGECMSTGFDQYKCDCTRTGFY 33 (587)
T ss_dssp CCTTTT-CCCC-TTCEEEEEETTEEEEECTTSSEE
T ss_pred CCCCCC-CCCC-CCCEeeCCCCCCeEEecCCCCcc
Confidence 578875 4666 4568995 6799999999 8864
No 113
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=52.08 E-value=13 Score=32.71 Aligned_cols=27 Identities=11% Similarity=0.329 Sum_probs=21.6
Q ss_pred CeEEecEEEEcCeeeecccChhhHHHH
Q 010010 367 DVTILPTLVINNRQYRGKLDKGAVLKA 393 (520)
Q Consensus 367 ~~~~~Ptl~IN~~~yrg~l~~~~vl~~ 393 (520)
++...||++|||+.+.|..+.+.+...
T Consensus 146 gv~gtPt~vvng~~~~G~~~~~~l~~~ 172 (175)
T 1z6m_A 146 HIQFVPTIIIGEYIFDESVTEEELRGY 172 (175)
T ss_dssp TCCSSCEEEETTEEECTTCCHHHHHHH
T ss_pred CCCCcCeEEECCEEccCCCCHHHHHHH
Confidence 478899999999999998776655444
No 114
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=51.47 E-value=3.6 Score=30.31 Aligned_cols=20 Identities=25% Similarity=0.811 Sum_probs=17.0
Q ss_pred CCccc--cCCCceeeecCCCcc
Q 010010 425 ECKCK--DTWGSYECSCGSGLL 444 (520)
Q Consensus 425 ~~~C~--nt~g~y~C~C~~~~~ 444 (520)
+.+|. +..++|.|.|..||.
T Consensus 17 GG~C~~~~~~~~~~C~C~~Gyt 38 (53)
T 1nql_B 17 DGVCMYIEALDKYACNCVVGYI 38 (53)
T ss_dssp TCEEEEETTTTEEEEEECTTEE
T ss_pred CeEEeeecCCCCEEEecCCCCc
Confidence 46787 888999999999975
No 115
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=51.07 E-value=6.5 Score=39.33 Aligned_cols=28 Identities=21% Similarity=0.599 Sum_probs=24.8
Q ss_pred ccccCCCceeeecCCCccccccCCeeecc
Q 010010 427 KCKDTWGSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 427 ~C~nt~g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
.|.-+.++|.|.|+.|+. ..++.+|++.
T Consensus 317 lCl~~~~~~~C~C~~g~~-~~d~~~C~~~ 344 (349)
T 3v64_C 317 LCLPSGQNYTCACPTGFR-KINSHACALE 344 (349)
T ss_dssp EEECCTTSCEEECCTTEE-EETTTEEEEG
T ss_pred EeecCCCCCeeECCCCCc-CCCCCcccch
Confidence 588888899999999998 8899999864
No 116
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=49.92 E-value=8.7 Score=31.70 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=24.1
Q ss_pred CeEEecEEEEcCeeeecccChhhHHHHh
Q 010010 367 DVTILPTLVINNRQYRGKLDKGAVLKAI 394 (520)
Q Consensus 367 ~~~~~Ptl~IN~~~yrg~l~~~~vl~~i 394 (520)
+|..+||++|||..|.|..+.+.+.+.+
T Consensus 63 ~V~~~PT~~i~G~~~~G~~~~~~l~~~~ 90 (106)
T 3kp8_A 63 GITSYPTWIINGRTYTGVRSLEALAVAS 90 (106)
T ss_dssp TCCSSSEEEETTEEEESCCCHHHHHHHH
T ss_pred CCeEeCEEEECCEEecCCCCHHHHHHHh
Confidence 3788999999999999999988877665
No 117
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=49.65 E-value=2.4 Score=37.21 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=17.0
Q ss_pred CccccCCCceeeecCCCcc
Q 010010 426 CKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 426 ~~C~nt~g~y~C~C~~~~~ 444 (520)
..|.++|++|.|.|..+|.
T Consensus 131 g~C~~~~~~~~c~C~~g~~ 149 (157)
T 1g1t_A 131 GECVETINNYTCKCDPGFS 149 (157)
T ss_dssp EEEEEETTEEEEEECTTEE
T ss_pred CEeecCCCCeeEECCCCcc
Confidence 5799999999999998864
No 118
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=49.42 E-value=5.1 Score=39.14 Aligned_cols=27 Identities=37% Similarity=0.840 Sum_probs=23.9
Q ss_pred ccccCCCceeeecCCCccccccCCeee
Q 010010 427 KCKDTWGSYECSCGSGLLYMQEHDTCI 453 (520)
Q Consensus 427 ~C~nt~g~y~C~C~~~~~~~~~~~~Ci 453 (520)
.|.|+.|+|.|.|..||.+..++.+|.
T Consensus 136 ~C~n~~g~~~csC~~Gy~L~~d~~~C~ 162 (286)
T 1nt0_A 136 YCHXYLGGYYCSCRVGYILHQNKHTCS 162 (286)
T ss_dssp EEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred ccccccCceEeecCCCceeccCCCCcc
Confidence 699999999999999998887777775
No 119
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=48.94 E-value=7.5 Score=26.91 Aligned_cols=10 Identities=0% Similarity=-0.662 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 010010 476 TGVAGYAFYK 485 (520)
Q Consensus 476 ~~~~~~~~yk 485 (520)
+.++.|++||
T Consensus 27 i~~l~~~~~r 36 (38)
T 2k1k_A 27 LLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHee
Confidence 3334444443
No 120
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=47.03 E-value=19 Score=32.81 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeec
Q 010010 321 CAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (520)
Q Consensus 321 C~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg 383 (520)
=-..+.+.+|+|.+++ +.++. ...-++++.+.-.. .+|..-||++|||+.+.|
T Consensus 115 ~l~~~a~~~Gld~~~~---l~~~~---~~~~v~~~~~~a~~----~GV~gtPtf~ing~~~~~ 167 (182)
T 3gn3_A 115 IIARIERYSGLALAEA---FANPE---LEHAVKWHTKYARQ----NGIHVSPTFMINGLVQPG 167 (182)
T ss_dssp HHHHHHHHHTCCCHHH---HHCGG---GHHHHHHHHHHHHH----HTCCSSSEEEETTEECTT
T ss_pred HHHHHHHHhCCCHHHH---hcChH---HHHHHHHHHHHHHH----CCCCccCEEEECCEEccC
Confidence 3456778899998887 43332 22233333222112 347889999999999853
No 121
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=46.80 E-value=30 Score=22.18 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010010 462 SWGFVWMVILGLAATGVAGYAFYKYR 487 (520)
Q Consensus 462 ~~~~~~~v~~~~~~~~~~~~~~yk~~ 487 (520)
-|-++..+++. +.+...||++|||.
T Consensus 5 iweviaglval-ltflafgfwlfkyl 29 (32)
T 2lx0_A 5 IWEVIAGLVAL-LTFLAFGFWLFKYL 29 (32)
T ss_dssp SHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 36444333333 34566788999985
No 122
>1dme_A CD6 metallothionein-1; NMR {Callinectes sapidus} SCOP: g.46.1.1 PDB: 1dmf_A 1j5m_A
Probab=46.58 E-value=8.2 Score=24.68 Aligned_cols=22 Identities=45% Similarity=1.159 Sum_probs=10.9
Q ss_pred CccCCcchhhhhh---hccCCCCCCcc
Q 010010 405 AICLSEDVDECEE---KLACQCPECKC 428 (520)
Q Consensus 405 ~~C~~~didEC~~---~~~c~c~~~~C 428 (520)
|-|+ |.=||+| |..|.|.+|.|
T Consensus 3 PCC~--dkceC~eG~CK~GC~ctscrC 27 (28)
T 1dme_A 3 PCCN--DKCVCQEGGCKAGCQCTSCRC 27 (28)
T ss_dssp CSTT--SCCCTTTTCCCSCCCCTTSCC
T ss_pred CccC--CeeeecCCCcccCceeccccc
Confidence 4454 4555665 33455544443
No 123
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=39.61 E-value=8.8 Score=39.36 Aligned_cols=29 Identities=24% Similarity=0.894 Sum_probs=21.0
Q ss_pred hhhhhhccCCCCCCccccCCCceeeecCC-Cc
Q 010010 413 DECEEKLACQCPECKCKDTWGSYECSCGS-GL 443 (520)
Q Consensus 413 dEC~~~~~c~c~~~~C~nt~g~y~C~C~~-~~ 443 (520)
++|.+ .+|+ .+.+|.+.|++|.|.|+. +|
T Consensus 186 ~~C~~-~pC~-n~g~C~~~~~~~~C~C~~~~~ 215 (410)
T 3asi_A 186 TTCQE-DSCS-NQGVCLQQWDGFSCDCSMTSF 215 (410)
T ss_dssp SCCCT-TSSS-TTCEEEECSSSEEEECTTTSE
T ss_pred CCccc-ccCC-CCCEecCCCCCceEeccCCcc
Confidence 33443 3566 346899999999999996 54
No 124
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=39.12 E-value=16 Score=27.40 Aligned_cols=21 Identities=43% Similarity=0.469 Sum_probs=18.9
Q ss_pred cceeEEEEehhhHHHHHHHHh
Q 010010 146 ITIPSALISKSLGDSIKKSLS 166 (520)
Q Consensus 146 i~IPsv~Isk~dG~~L~~~l~ 166 (520)
.-||++-|+++|-++++++++
T Consensus 51 qiipsinisksdveairkamk 71 (72)
T 4f87_A 51 QIIPSINISKSDVEAIRKAMK 71 (72)
T ss_dssp TTSCEEECCGGGHHHHHHHHC
T ss_pred HhCccccccHhHHHHHHHHhc
Confidence 468999999999999999875
No 125
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=37.61 E-value=19 Score=27.01 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=20.4
Q ss_pred CCeEEecEEEEcCee-eecccChhhHHHH
Q 010010 366 GDVTILPTLVINNRQ-YRGKLDKGAVLKA 393 (520)
Q Consensus 366 ~~~~~~Ptl~IN~~~-yrg~l~~~~vl~~ 393 (520)
.++..+||+++||+. +.|..+.+.+...
T Consensus 52 ~~v~~~Pt~~~~G~~~~~G~~~~~~l~~~ 80 (85)
T 1fo5_A 52 YGIMAVPTIVINGDVEFIGAPTKEALVEA 80 (85)
T ss_dssp TTTCCSSEEEETTEEECCSSSSSHHHHHH
T ss_pred CCCcccCEEEECCEEeeecCCCHHHHHHH
Confidence 346789999999986 7777666665544
No 126
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=37.06 E-value=50 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010010 463 WGFVWMVILGLAATGVAGYAFYKYRIR 489 (520)
Q Consensus 463 ~~~~~~v~~~~~~~~~~~~~~yk~~~~ 489 (520)
+.+++.++++++++|++.+.++|+.+.
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666777777778886643
No 127
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=35.78 E-value=20 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=20.3
Q ss_pred CeEEecEEEEcCee-eecccChhhHHHH
Q 010010 367 DVTILPTLVINNRQ-YRGKLDKGAVLKA 393 (520)
Q Consensus 367 ~~~~~Ptl~IN~~~-yrg~l~~~~vl~~ 393 (520)
++..+||+++||+. +.|..+.+.+...
T Consensus 52 ~v~~~Pt~~~~G~~~~~G~~~~~~l~~~ 79 (85)
T 1nho_A 52 GLMAVPAIAINGVVRFVGAPSREELFEA 79 (85)
T ss_dssp CSSCSSEEEETTTEEEECSSCCHHHHHH
T ss_pred CceeeCEEEECCEEEEccCCCHHHHHHH
Confidence 46789999999986 7787776665544
No 128
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=33.80 E-value=47 Score=23.65 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 010010 481 YAFYKYR 487 (520)
Q Consensus 481 ~~~yk~~ 487 (520)
.++|.+|
T Consensus 31 ~~~~~RR 37 (44)
T 2ks1_B 31 IGLFMRR 37 (44)
T ss_dssp HHHHHHT
T ss_pred HHHHhhh
Confidence 3344433
No 129
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=32.88 E-value=18 Score=23.21 Aligned_cols=15 Identities=53% Similarity=1.504 Sum_probs=11.4
Q ss_pred cccccCCccccCCCCC
Q 010010 250 SQCINHGRYCAPDPEQ 265 (520)
Q Consensus 250 ~~Ci~~GrYCa~dP~~ 265 (520)
+.|+-+|.+| |||+.
T Consensus 1 secvenggfc-pdpek 15 (32)
T 4b2v_A 1 SECVENGGFC-PDPEK 15 (32)
T ss_dssp CCCCCTTCBC-CCTTT
T ss_pred CchhhcCCcC-CChHH
Confidence 3588899998 77864
No 130
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=32.76 E-value=12 Score=32.85 Aligned_cols=20 Identities=25% Similarity=0.805 Sum_probs=17.7
Q ss_pred CCccccCCCceeeecCCCcc
Q 010010 425 ECKCKDTWGSYECSCGSGLL 444 (520)
Q Consensus 425 ~~~C~nt~g~y~C~C~~~~~ 444 (520)
...|.+++++|.|.|..||.
T Consensus 130 ~g~C~~~~~~~~c~C~~g~~ 149 (164)
T 3cfw_A 130 HGECVEIINNYTCNCDVGYY 149 (164)
T ss_dssp SEEEEEETTEEEEEECTTCB
T ss_pred CCeecccCCCceeeeCCCcc
Confidence 45899999999999999965
No 131
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.53 E-value=72 Score=25.39 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010010 461 ASWGFVWMVILGLAATGVAGYAFYKYRIRRY 491 (520)
Q Consensus 461 ~~~~~~~~v~~~~~~~~~~~~~~yk~~~~~~ 491 (520)
++.+++.+++++++++.+.=+.++-+--|+|
T Consensus 14 v~gvi~gilliGllllliwk~~~~i~DrrE~ 44 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWKLLITIHDRKEF 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777787777766656555554554
No 132
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=32.31 E-value=13 Score=26.82 Aligned_cols=21 Identities=24% Similarity=0.775 Sum_probs=16.5
Q ss_pred CCCcccc----CCCceeeecCCCcc
Q 010010 424 PECKCKD----TWGSYECSCGSGLL 444 (520)
Q Consensus 424 ~~~~C~n----t~g~y~C~C~~~~~ 444 (520)
.+.+|.+ ..++|.|.|..||.
T Consensus 18 NGGtC~~~~~~~~~~y~C~C~~Gf~ 42 (52)
T 3ca7_A 18 NDAHCFAVKIADLPVYSCECAIGFM 42 (52)
T ss_dssp TTCEEEEEEETTEEEEEEECCTTEE
T ss_pred CCCEEecCccCCCCCEEEECCCCCc
Confidence 3457886 56799999999965
No 133
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=31.34 E-value=73 Score=27.97 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-H---hHHHHHHHHHhcc
Q 010010 465 FVWMVILGLAATGVAGYAFYKYRIRR-Y---MDSEIRAIMAQYM 504 (520)
Q Consensus 465 ~~~~v~~~~~~~~~~~~~~yk~~~~~-~---m~~ev~~i~aqYm 504 (520)
|+++|+.+|+.+++-.|.-|..|.|. . .-.+++..+.+|+
T Consensus 8 vviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 51 (151)
T 3sok_A 8 IVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRISDHL 51 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444332 1 2234555666665
No 134
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=29.87 E-value=23 Score=35.49 Aligned_cols=28 Identities=32% Similarity=0.765 Sum_probs=23.2
Q ss_pred ccccCCCceeeecCCCccccccCCeeec
Q 010010 427 KCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (520)
Q Consensus 427 ~C~nt~g~y~C~C~~~~~~~~~~~~Ci~ 454 (520)
.|.|+.|+|.|.|..++.+..+..+|..
T Consensus 137 ~c~n~~g~~~csC~~g~~l~~~~~~~~~ 164 (361)
T 4aqb_A 137 YCHNYIGGYYCSCRFGYILHTDNRTCRV 164 (361)
T ss_dssp EEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred cCCccCCCceeccCCCeEEecccccccc
Confidence 6999999999999999887766666543
No 135
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=26.13 E-value=32 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=19.4
Q ss_pred eEEecEEEEcCee-eeccc-ChhhHHHHh
Q 010010 368 VTILPTLVINNRQ-YRGKL-DKGAVLKAI 394 (520)
Q Consensus 368 ~~~~Ptl~IN~~~-yrg~l-~~~~vl~~i 394 (520)
+...||+++||+. ++|.. +.+.+...+
T Consensus 48 v~~~Pt~~~~G~~~~~G~~~~~~~l~~~l 76 (77)
T 1ilo_A 48 LTALPGLAVDGELKIMGRVASKEEIKKIL 76 (77)
T ss_dssp CSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred CCcCCEEEECCEEEEcCCCCCHHHHHHHh
Confidence 5778999999986 66776 666665543
No 136
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=26.06 E-value=29 Score=29.09 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=26.6
Q ss_pred cCCCCCCcccc-CCCceeeecCCCccccccCCeeeccC
Q 010010 420 ACQCPECKCKD-TWGSYECSCGSGLLYMQEHDTCISKD 456 (520)
Q Consensus 420 ~c~c~~~~C~n-t~g~y~C~C~~~~~~~~~~~~Ci~~~ 456 (520)
.|. +.+.|.+ ..|.++|.|..||. .++.+|+...
T Consensus 11 ~C~-~NA~C~r~~~g~e~C~C~~gy~--gdg~~Cv~~~ 45 (99)
T 1ob1_C 11 QCP-QNSGCFRHLDEREECKCLLNYK--QEGDKCVENP 45 (99)
T ss_dssp CCC-TTEEEECCTTSCCEEEECTTEE--EETTEEEECS
T ss_pred CCC-CCCCeEEcCCCCEEEEecCCee--cCCCeEeeCC
Confidence 444 5678988 58999999999965 5788888753
No 137
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=25.59 E-value=1.1e+02 Score=26.49 Aligned_cols=15 Identities=0% Similarity=0.116 Sum_probs=10.2
Q ss_pred HHHHHHHHhcccCCCc
Q 010010 494 SEIRAIMAQYMPLDSQ 509 (520)
Q Consensus 494 ~ev~~i~aqYmpl~~~ 509 (520)
.+++..+++|+ .+.+
T Consensus 41 ~~~~~a~~~~~-~~~~ 55 (144)
T 1oqw_A 41 NPLKTTVEEAL-SRGW 55 (144)
T ss_dssp TTHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHH-HcCC
Confidence 46777788888 4443
No 138
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=25.42 E-value=1.3e+02 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Q 010010 466 VWMVILGLAATGVAGYAFYKYRIRRYMDSEIRAIMAQY 503 (520)
Q Consensus 466 ~~~v~~~~~~~~~~~~~~yk~~~~~~m~~ev~~i~aqY 503 (520)
+++|+++++++..+++-.|...+++.-..+.++.+.+.
T Consensus 6 llvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~ 43 (151)
T 3sok_A 6 LMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGL 43 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777666666777666666666666666554
No 139
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=24.74 E-value=51 Score=28.87 Aligned_cols=31 Identities=26% Similarity=0.158 Sum_probs=24.5
Q ss_pred CCeEEecEEEE-cCeeeecccChhhHHHHhhc
Q 010010 366 GDVTILPTLVI-NNRQYRGKLDKGAVLKAICA 396 (520)
Q Consensus 366 ~~~~~~Ptl~I-N~~~yrg~l~~~~vl~~iC~ 396 (520)
.+|...||++| ||+.+.|-.+.+.+..+|=.
T Consensus 105 ~gI~gtPt~vi~nG~~i~G~~~~~~l~~~i~~ 136 (147)
T 3gv1_A 105 FGFNGTPTLVFPNGRTQSGYSPMPQLEEIIRK 136 (147)
T ss_dssp TTCCSSCEEECTTSCEEESCCCTTHHHHHHHH
T ss_pred hCCCccCEEEEECCEEeeCCCCHHHHHHHHHH
Confidence 34788999999 89999999888777666533
No 140
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=21.81 E-value=74 Score=25.10 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=14.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010010 459 SEASWGFVWMVILGLAATGVAGYAFYK 485 (520)
Q Consensus 459 ~~~~~~~~~~v~~~~~~~~~~~~~~yk 485 (520)
+..|.+-+++|++.++.++++....|-
T Consensus 10 pttgvvtv~viliavaalg~li~gcwc 36 (90)
T 1zza_A 10 PTTGVVTVIVILIAIAALGALILGCWC 36 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcceEEehhHHHHHHHHHHHHHHHHH
Confidence 556655455555555555544333444
No 141
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=21.35 E-value=1.2e+02 Score=24.28 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=29.8
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeecc
Q 010010 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGK 384 (520)
Q Consensus 323 ~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~ 384 (520)
.+++++++++...++ ++ .++-+.+++....+ +...+|+++|||+..-|-
T Consensus 33 k~~L~~~~i~y~~id-------I~-~~~~~~~~l~~~~~-----g~~~vP~ifi~g~~igG~ 81 (99)
T 3qmx_A 33 LALLKRKGVEFQEYC-------ID-GDNEAREAMAARAN-----GKRSLPQIFIDDQHIGGC 81 (99)
T ss_dssp HHHHHHHTCCCEEEE-------CT-TCHHHHHHHHHHTT-----TCCCSCEEEETTEEEESH
T ss_pred HHHHHHCCCCCEEEE-------cC-CCHHHHHHHHHHhC-----CCCCCCEEEECCEEEeCh
Confidence 567888888755543 12 23334444444430 246789999999887554
No 142
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=21.18 E-value=38 Score=28.64 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=25.9
Q ss_pred cCCCCCCcccc-CCCceeeecCCCccccccCCeeecc
Q 010010 420 ACQCPECKCKD-TWGSYECSCGSGLLYMQEHDTCISK 455 (520)
Q Consensus 420 ~c~c~~~~C~n-t~g~y~C~C~~~~~~~~~~~~Ci~~ 455 (520)
.|. +.+.|.+ ..|.-+|.|..||. .++.+|+..
T Consensus 17 ~Cp-~NA~C~r~~~G~e~CrCl~gY~--~dg~~Cv~~ 50 (105)
T 1n1i_A 17 NVP-ENAACYRYLDGTEEWRCLLGFK--EVGGKCVPA 50 (105)
T ss_dssp CCC-TTEEEEECTTSCEEEEECTTEE--ECSSSEEEC
T ss_pred CCC-CCCCeEECCCCCEeEEEECCee--ccCCEEEEC
Confidence 443 5578888 89999999999965 678888765
No 143
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=20.87 E-value=79 Score=24.97 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 010010 463 WGFVWMVILGLAATGVAGYAFYK 485 (520)
Q Consensus 463 ~~~~~~v~~~~~~~~~~~~~~yk 485 (520)
..++-+++++++++|++||+++-
T Consensus 35 ~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 35 LAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888889888854
No 144
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=20.61 E-value=84 Score=21.49 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010010 464 GFVWMVILGLAATGVAGYAFYK 485 (520)
Q Consensus 464 ~~~~~v~~~~~~~~~~~~~~yk 485 (520)
+|+.+|-+.++.+.+++|.-||
T Consensus 9 IVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 9 IVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 3444444555556666666665
No 145
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=20.45 E-value=1.3e+02 Score=24.06 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=29.8
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeecc
Q 010010 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGK 384 (520)
Q Consensus 322 ~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~ 384 (520)
+..++++++++..+++ ++ .|+-+.+++....+ +..+|+|+|||...-|-
T Consensus 38 ~~~~L~~~~i~~~~vd-------i~-~~~~~~~~l~~~~g------~~~vP~v~i~g~~igg~ 86 (105)
T 2yan_A 38 ILEILNSTGVEYETFD-------IL-EDEEVRQGLKAYSN------WPTYPQLYVKGELVGGL 86 (105)
T ss_dssp HHHHHHHHTCCCEEEE-------GG-GCHHHHHHHHHHHT------CCSSCEEEETTEEEECH
T ss_pred HHHHHHHCCCCeEEEE-------CC-CCHHHHHHHHHHHC------CCCCCeEEECCEEEeCh
Confidence 4567888887654442 12 23444444444433 35789999999987653
No 146
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=20.30 E-value=1.2e+02 Score=24.68 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=30.7
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeecc
Q 010010 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGK 384 (520)
Q Consensus 322 ~~~v~~~l~id~~kv~~C~~~~~~d~~N~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~ 384 (520)
+.+++.++|++...++= + .++-+.+++....+. ..+|.++|||..+-|-
T Consensus 39 ak~~L~~~gi~~~~~dI-------~-~~~~~~~~l~~~~g~------~tvP~ifi~g~~iGG~ 87 (109)
T 3ipz_A 39 VVQILKNLNVPFEDVNI-------L-ENEMLRQGLKEYSNW------PTFPQLYIGGEFFGGC 87 (109)
T ss_dssp HHHHHHHTTCCCEEEEG-------G-GCHHHHHHHHHHHTC------SSSCEEEETTEEEECH
T ss_pred HHHHHHHcCCCcEEEEC-------C-CCHHHHHHHHHHHCC------CCCCeEEECCEEEeCH
Confidence 46788888888655431 1 233344445444343 4689999999987654
Done!