Query 010011
Match_columns 520
No_of_seqs 343 out of 2563
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 19:59:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02153 epithiospecifier prot 100.0 1.5E-44 3.3E-49 370.5 38.4 302 26-331 17-339 (341)
2 PLN02193 nitrile-specifier pro 100.0 6.9E-44 1.5E-48 379.5 38.7 298 25-332 159-469 (470)
3 KOG4693 Uncharacterized conser 100.0 4.2E-44 9.1E-49 332.3 23.6 311 31-351 13-352 (392)
4 KOG0379 Kelch repeat-containin 100.0 1E-40 2.2E-45 354.6 30.0 390 23-431 52-449 (482)
5 KOG4152 Host cell transcriptio 100.0 2.9E-41 6.2E-46 336.5 21.5 301 25-335 26-367 (830)
6 PLN02193 nitrile-specifier pro 100.0 3.6E-38 7.8E-43 335.6 36.6 293 32-341 111-420 (470)
7 KOG4693 Uncharacterized conser 100.0 2.2E-39 4.7E-44 300.9 21.5 251 1-262 54-313 (392)
8 KOG4441 Proteins containing BT 100.0 8E-38 1.7E-42 337.5 30.0 271 43-340 284-555 (571)
9 PLN02153 epithiospecifier prot 100.0 5.8E-36 1.3E-40 307.0 33.9 264 67-340 4-293 (341)
10 PHA02713 hypothetical protein; 100.0 3.1E-36 6.7E-41 326.2 28.3 242 27-286 289-543 (557)
11 TIGR03548 mutarot_permut cycli 100.0 1.9E-35 4.2E-40 300.9 32.0 274 30-325 2-322 (323)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 2.2E-35 4.8E-40 303.4 32.4 278 27-329 3-344 (346)
13 PHA02713 hypothetical protein; 100.0 8.1E-36 1.8E-40 323.0 30.4 263 45-338 259-540 (557)
14 KOG4441 Proteins containing BT 100.0 9.6E-36 2.1E-40 321.4 27.6 238 27-285 318-555 (571)
15 KOG1230 Protein containing rep 100.0 1.4E-35 3E-40 290.3 21.7 261 22-286 57-350 (521)
16 PRK14131 N-acetylneuraminic ac 100.0 8.5E-34 1.8E-38 294.5 32.0 281 27-332 24-369 (376)
17 KOG0379 Kelch repeat-containin 100.0 5E-34 1.1E-38 303.4 27.5 257 77-342 53-312 (482)
18 PHA03098 kelch-like protein; P 100.0 1.6E-33 3.5E-38 306.0 29.6 234 32-285 285-520 (534)
19 PHA03098 kelch-like protein; P 100.0 1.8E-32 3.9E-37 297.8 29.6 267 44-340 251-520 (534)
20 TIGR03548 mutarot_permut cycli 100.0 5.6E-31 1.2E-35 268.1 27.7 223 27-265 58-317 (323)
21 KOG1230 Protein containing rep 100.0 1.2E-31 2.5E-36 262.8 19.9 254 80-338 62-347 (521)
22 PHA02790 Kelch-like protein; P 100.0 1.2E-30 2.6E-35 278.7 28.8 207 43-283 271-477 (480)
23 TIGR03547 muta_rot_YjhT mutatr 100.0 2.6E-30 5.6E-35 265.8 28.0 230 27-274 48-344 (346)
24 PRK14131 N-acetylneuraminic ac 100.0 3.2E-30 6.8E-35 267.7 28.2 235 30-282 73-374 (376)
25 PHA02790 Kelch-like protein; P 100.0 4.1E-28 8.8E-33 259.2 28.2 211 90-338 267-477 (480)
26 KOG4152 Host cell transcriptio 100.0 1.3E-28 2.8E-33 246.2 17.6 258 69-338 16-309 (830)
27 KOG2437 Muskelin [Signal trans 99.8 2.4E-20 5.2E-25 187.0 2.8 299 27-333 256-614 (723)
28 COG3055 Uncharacterized protei 99.8 3.3E-17 7.1E-22 159.8 22.1 282 28-331 33-374 (381)
29 COG3055 Uncharacterized protei 99.7 2.5E-15 5.5E-20 146.8 21.0 232 31-278 82-376 (381)
30 KOG2437 Muskelin [Signal trans 99.6 3.7E-16 8E-21 157.2 8.0 272 69-343 238-546 (723)
31 PF13964 Kelch_6: Kelch motif 99.1 2.7E-10 5.8E-15 82.5 6.6 49 84-135 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.0 9.4E-10 2E-14 79.6 6.5 50 31-85 1-50 (50)
33 PLN02772 guanylate kinase 99.0 3.8E-09 8.2E-14 107.6 11.5 89 80-176 20-110 (398)
34 PLN02772 guanylate kinase 98.9 5.4E-09 1.2E-13 106.5 11.7 92 25-120 18-110 (398)
35 PF13415 Kelch_3: Galactose ox 98.9 4.1E-09 8.9E-14 75.9 6.0 47 94-143 1-49 (49)
36 PF13415 Kelch_3: Galactose ox 98.8 7.9E-09 1.7E-13 74.4 6.2 48 43-93 1-49 (49)
37 PF07646 Kelch_2: Kelch motif; 98.7 2.4E-08 5.2E-13 71.8 5.9 46 241-286 1-48 (49)
38 PF13418 Kelch_4: Galactose ox 98.7 1.5E-08 3.2E-13 72.9 4.4 46 241-286 1-47 (49)
39 PF01344 Kelch_1: Kelch motif; 98.7 3.1E-08 6.7E-13 70.5 5.9 46 241-286 1-46 (47)
40 PF07646 Kelch_2: Kelch motif; 98.7 3.7E-08 8E-13 70.8 6.4 44 84-127 1-47 (49)
41 PF01344 Kelch_1: Kelch motif; 98.7 1.3E-08 2.8E-13 72.4 3.4 43 84-126 1-44 (47)
42 PF13418 Kelch_4: Galactose ox 98.7 1.8E-08 3.8E-13 72.5 4.0 48 31-82 1-48 (49)
43 PF03089 RAG2: Recombination a 98.7 3.2E-06 6.9E-11 81.0 20.2 178 131-318 19-231 (337)
44 PF03089 RAG2: Recombination a 98.6 6.8E-06 1.5E-10 78.8 20.2 164 96-263 40-231 (337)
45 PF13854 Kelch_5: Kelch motif 98.6 1.4E-07 3.1E-12 65.4 5.3 40 81-120 1-42 (42)
46 PF13854 Kelch_5: Kelch motif 98.5 2.7E-07 5.9E-12 64.0 5.4 40 238-277 1-41 (42)
47 smart00612 Kelch Kelch domain. 98.5 2.7E-07 5.9E-12 65.2 4.9 47 96-145 1-47 (47)
48 smart00612 Kelch Kelch domain. 98.3 1.4E-06 3.1E-11 61.4 4.8 47 45-95 1-47 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 98.2 0.0001 2.2E-09 71.2 17.1 151 111-289 47-211 (243)
50 TIGR01640 F_box_assoc_1 F-box 98.1 0.0011 2.5E-08 63.9 22.1 198 60-278 14-230 (230)
51 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.00073 1.6E-08 65.3 15.5 147 61-234 47-207 (243)
52 TIGR01640 F_box_assoc_1 F-box 97.7 0.009 2E-07 57.6 21.5 164 110-287 14-188 (230)
53 PRK11138 outer membrane biogen 97.5 0.13 2.8E-06 53.9 28.3 194 43-282 69-282 (394)
54 PF13360 PQQ_2: PQQ-like domai 97.4 0.14 3E-06 49.1 25.6 184 42-279 35-233 (238)
55 PF13360 PQQ_2: PQQ-like domai 97.3 0.17 3.7E-06 48.4 26.3 179 60-282 3-199 (238)
56 PRK11138 outer membrane biogen 96.8 0.81 1.8E-05 47.8 27.5 174 60-279 170-356 (394)
57 TIGR03300 assembly_YfgL outer 96.7 0.95 2.1E-05 46.9 26.8 188 43-282 65-267 (377)
58 PF07893 DUF1668: Protein of u 96.6 0.43 9.2E-06 49.0 21.7 123 35-182 69-215 (342)
59 PF07893 DUF1668: Protein of u 96.5 0.61 1.3E-05 47.9 22.1 127 89-234 70-216 (342)
60 PF12768 Rax2: Cortical protei 95.6 0.51 1.1E-05 46.9 15.6 113 164-285 14-130 (281)
61 PRK05137 tolB translocation pr 95.2 5.3 0.00011 42.4 25.0 210 41-284 211-420 (435)
62 KOG2055 WD40 repeat protein [G 94.9 1.1 2.4E-05 46.5 15.4 151 95-279 225-377 (514)
63 TIGR03300 assembly_YfgL outer 94.9 5.5 0.00012 41.1 27.0 174 60-279 155-341 (377)
64 PF12768 Rax2: Cortical protei 94.5 0.59 1.3E-05 46.4 12.3 94 215-315 14-110 (281)
65 PRK05137 tolB translocation pr 94.4 7.9 0.00017 41.0 26.8 148 110-284 226-374 (435)
66 cd00094 HX Hemopexin-like repe 94.2 3.8 8.3E-05 38.3 16.8 145 44-228 17-178 (194)
67 cd00094 HX Hemopexin-like repe 93.9 5.1 0.00011 37.4 17.0 153 89-279 11-178 (194)
68 TIGR02800 propeller_TolB tol-p 93.9 9.5 0.00021 39.8 24.1 149 110-285 214-363 (417)
69 PRK04792 tolB translocation pr 93.8 11 0.00024 40.2 23.5 205 40-283 226-431 (448)
70 PRK00178 tolB translocation pr 93.8 11 0.00023 39.9 23.1 198 41-278 208-408 (430)
71 cd00216 PQQ_DH Dehydrogenases 93.3 14 0.0003 39.9 24.5 126 88-232 55-192 (488)
72 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.2 15 0.00033 40.1 21.6 125 88-233 63-199 (527)
73 KOG2055 WD40 repeat protein [G 93.1 1.2 2.6E-05 46.2 11.6 143 36-208 262-406 (514)
74 PRK04792 tolB translocation pr 93.0 14 0.00031 39.3 23.4 149 110-285 242-391 (448)
75 cd00216 PQQ_DH Dehydrogenases 93.0 15 0.00033 39.6 24.9 123 43-182 61-193 (488)
76 PF12217 End_beta_propel: Cata 92.6 9.3 0.0002 37.1 16.1 260 43-317 25-335 (367)
77 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.5 19 0.00041 39.3 23.5 210 43-279 69-336 (527)
78 PF08268 FBA_3: F-box associat 92.3 3.4 7.4E-05 35.7 12.3 85 199-285 4-89 (129)
79 PF05096 Glu_cyclase_2: Glutam 92.1 12 0.00026 36.7 16.8 155 93-283 54-210 (264)
80 TIGR02800 propeller_TolB tol-p 92.0 17 0.00038 37.8 22.5 148 60-234 214-363 (417)
81 PRK04922 tolB translocation pr 91.9 19 0.00041 38.1 23.8 201 41-279 213-414 (433)
82 PF02897 Peptidase_S9_N: Proly 91.8 19 0.00041 37.7 20.6 189 60-276 150-357 (414)
83 TIGR03866 PQQ_ABC_repeats PQQ- 91.8 13 0.00029 36.0 26.3 183 46-280 3-191 (300)
84 PRK04043 tolB translocation pr 91.6 21 0.00045 37.8 20.1 150 110-286 213-367 (419)
85 PF08450 SGL: SMP-30/Gluconola 90.9 16 0.00034 35.2 18.9 193 94-331 11-213 (246)
86 PRK04043 tolB translocation pr 90.8 25 0.00054 37.2 23.5 190 60-283 213-407 (419)
87 PF02191 OLF: Olfactomedin-lik 90.6 18 0.00039 35.4 18.4 187 43-258 30-237 (250)
88 PF02191 OLF: Olfactomedin-lik 90.6 18 0.00039 35.3 17.5 193 94-312 30-236 (250)
89 PF05096 Glu_cyclase_2: Glutam 90.5 19 0.00041 35.4 18.1 154 43-232 55-210 (264)
90 PF09910 DUF2139: Uncharacteri 90.3 21 0.00044 35.6 19.5 129 59-206 77-219 (339)
91 PRK00178 tolB translocation pr 90.3 27 0.00058 36.8 25.1 147 110-285 223-372 (430)
92 cd00200 WD40 WD40 domain, foun 89.6 18 0.00039 33.9 24.9 185 45-280 22-211 (289)
93 PF08450 SGL: SMP-30/Gluconola 89.5 21 0.00045 34.4 23.4 202 43-285 11-222 (246)
94 PRK03629 tolB translocation pr 89.3 32 0.0007 36.4 25.1 149 110-285 223-372 (429)
95 PRK04922 tolB translocation pr 88.8 35 0.00076 36.1 25.9 148 109-285 227-377 (433)
96 PF10282 Lactonase: Lactonase, 86.8 40 0.00086 34.5 21.6 235 48-313 3-263 (345)
97 PF10282 Lactonase: Lactonase, 86.4 21 0.00046 36.5 14.8 173 32-234 144-333 (345)
98 PRK03629 tolB translocation pr 85.7 52 0.0011 34.8 23.9 208 39-283 206-413 (429)
99 TIGR02658 TTQ_MADH_Hv methylam 85.5 47 0.001 34.2 23.7 232 29-279 44-333 (352)
100 PRK13684 Ycf48-like protein; P 85.2 47 0.001 33.9 24.7 222 38-314 51-278 (334)
101 cd00200 WD40 WD40 domain, foun 85.0 33 0.00072 32.0 24.0 175 60-279 73-252 (289)
102 KOG2321 WD40 repeat protein [G 84.8 41 0.00088 36.4 15.6 77 131-228 130-208 (703)
103 TIGR03866 PQQ_ABC_repeats PQQ- 84.4 41 0.00089 32.5 29.0 153 37-229 36-191 (300)
104 PF08268 FBA_3: F-box associat 84.2 8.9 0.00019 33.1 9.2 86 142-234 3-89 (129)
105 PF03178 CPSF_A: CPSF A subuni 83.9 49 0.0011 33.3 15.9 122 110-258 62-190 (321)
106 PF02897 Peptidase_S9_N: Proly 83.7 60 0.0013 33.9 19.6 194 59-284 201-412 (414)
107 COG1520 FOG: WD40-like repeat 83.0 60 0.0013 33.4 19.8 196 43-284 68-278 (370)
108 PF14870 PSII_BNR: Photosynthe 82.9 56 0.0012 32.9 21.5 228 37-316 21-253 (302)
109 PLN00033 photosystem II stabil 82.6 67 0.0015 33.7 26.9 114 41-181 98-214 (398)
110 PRK02889 tolB translocation pr 82.5 70 0.0015 33.8 23.4 149 110-285 220-369 (427)
111 KOG0649 WD40 repeat protein [G 81.3 54 0.0012 31.7 13.9 113 144-285 126-244 (325)
112 PRK13684 Ycf48-like protein; P 79.3 78 0.0017 32.3 23.0 204 62-314 111-321 (334)
113 PTZ00421 coronin; Provisional 77.4 1.1E+02 0.0024 33.1 20.9 154 95-283 138-297 (493)
114 PRK02889 tolB translocation pr 77.1 1E+02 0.0022 32.5 23.1 199 41-277 205-404 (427)
115 TIGR03074 PQQ_membr_DH membran 76.8 1.5E+02 0.0032 34.1 24.1 32 88-125 188-221 (764)
116 PLN00181 protein SPA1-RELATED; 74.7 1.7E+02 0.0036 33.7 23.7 139 95-277 545-691 (793)
117 KOG0310 Conserved WD40 repeat- 73.2 1.3E+02 0.0028 31.8 19.6 175 92-318 120-302 (487)
118 smart00284 OLF Olfactomedin-li 72.9 99 0.0021 30.3 19.0 194 94-312 34-241 (255)
119 smart00284 OLF Olfactomedin-li 72.6 1E+02 0.0022 30.3 19.0 184 44-258 35-242 (255)
120 PRK01742 tolB translocation pr 71.4 1.4E+02 0.0031 31.5 21.9 177 41-260 213-391 (429)
121 PRK11028 6-phosphogluconolacto 70.9 1.2E+02 0.0026 30.4 24.2 68 45-126 3-74 (330)
122 KOG0649 WD40 repeat protein [G 70.4 1.1E+02 0.0024 29.7 19.2 107 29-152 113-225 (325)
123 PF14583 Pectate_lyase22: Olig 70.1 1.4E+02 0.0031 31.0 14.8 247 39-317 43-304 (386)
124 PF02239 Cytochrom_D1: Cytochr 69.2 1.5E+02 0.0032 30.8 15.6 261 32-335 78-351 (369)
125 COG4257 Vgb Streptogramin lyas 68.2 1.3E+02 0.0028 29.8 20.4 184 61-285 125-314 (353)
126 PF02239 Cytochrom_D1: Cytochr 67.6 1.6E+02 0.0034 30.5 14.9 192 60-291 16-217 (369)
127 PLN02919 haloacid dehalogenase 67.0 2.8E+02 0.0061 33.2 27.3 158 94-279 694-891 (1057)
128 KOG0286 G-protein beta subunit 66.2 1.4E+02 0.003 29.8 12.4 111 187-318 95-210 (343)
129 KOG2321 WD40 repeat protein [G 64.2 69 0.0015 34.7 10.8 121 30-177 132-261 (703)
130 COG3823 Glutamine cyclotransfe 63.9 1.4E+02 0.003 28.5 13.8 153 43-234 55-216 (262)
131 PF03178 CPSF_A: CPSF A subuni 60.4 1.9E+02 0.0041 29.0 14.1 122 60-208 62-190 (321)
132 PRK11028 6-phosphogluconolacto 59.5 1.9E+02 0.0042 28.8 24.5 232 37-313 40-292 (330)
133 PF06433 Me-amine-dh_H: Methyl 56.0 1.1E+02 0.0024 31.2 10.4 85 31-123 36-131 (342)
134 PF09910 DUF2139: Uncharacteri 55.8 2.3E+02 0.005 28.5 23.9 129 109-257 77-219 (339)
135 COG0823 TolB Periplasmic compo 53.9 3E+02 0.0064 29.2 14.9 108 165-286 261-369 (425)
136 PLN00181 protein SPA1-RELATED; 53.2 4.1E+02 0.0088 30.6 24.7 174 60-278 555-740 (793)
137 COG2706 3-carboxymuconate cycl 51.0 2.9E+02 0.0063 28.2 19.2 204 15-241 124-339 (346)
138 KOG2048 WD40 repeat protein [G 50.1 4E+02 0.0087 29.6 14.4 167 31-234 382-560 (691)
139 PRK01742 tolB translocation pr 49.3 3.4E+02 0.0073 28.5 23.6 141 110-284 228-369 (429)
140 PF15525 DUF4652: Domain of un 48.5 1.5E+02 0.0033 27.5 9.0 76 209-286 80-158 (200)
141 KOG2048 WD40 repeat protein [G 47.9 4.3E+02 0.0094 29.4 21.2 119 196-337 389-511 (691)
142 PF06433 Me-amine-dh_H: Methyl 47.0 2.1E+02 0.0046 29.3 10.7 73 198-281 247-325 (342)
143 COG1520 FOG: WD40-like repeat 46.9 3.4E+02 0.0073 27.8 22.0 190 61-275 122-319 (370)
144 KOG0310 Conserved WD40 repeat- 45.8 4E+02 0.0087 28.4 18.2 172 42-262 121-301 (487)
145 PF13088 BNR_2: BNR repeat-lik 45.6 2.9E+02 0.0062 26.7 18.1 228 69-311 29-275 (275)
146 PF14870 PSII_BNR: Photosynthe 44.2 3.5E+02 0.0076 27.2 22.1 214 43-313 71-293 (302)
147 KOG0316 Conserved WD40 repeat- 44.0 3.1E+02 0.0068 26.6 15.3 178 60-279 81-260 (307)
148 PRK01029 tolB translocation pr 43.8 4.2E+02 0.009 28.0 20.1 62 217-285 351-412 (428)
149 COG4880 Secreted protein conta 43.8 4.2E+02 0.0091 28.0 13.3 65 49-120 395-459 (603)
150 TIGR03074 PQQ_membr_DH membran 43.7 5.6E+02 0.012 29.5 25.4 61 213-279 410-480 (764)
151 KOG0294 WD40 repeat-containing 43.0 3.7E+02 0.008 27.2 15.9 28 388-421 243-275 (362)
152 cd05694 S1_Rrp5_repeat_hs2_sc2 42.9 32 0.00069 26.6 3.4 28 398-427 7-34 (74)
153 PLN00033 photosystem II stabil 42.7 4.2E+02 0.0092 27.8 25.5 216 44-313 147-388 (398)
154 PF12217 End_beta_propel: Cata 41.3 3.6E+02 0.0078 26.5 16.7 215 90-317 21-260 (367)
155 COG4946 Uncharacterized protei 40.9 4.8E+02 0.01 27.9 22.0 186 59-285 286-486 (668)
156 PRK10115 protease 2; Provision 40.5 5.9E+02 0.013 28.8 25.5 197 59-284 152-354 (686)
157 PF13570 PQQ_3: PQQ-like domai 39.9 66 0.0014 21.2 4.2 26 88-119 15-40 (40)
158 KOG0316 Conserved WD40 repeat- 36.6 4.1E+02 0.0089 25.8 10.5 91 166-280 81-177 (307)
159 PRK10115 protease 2; Provision 36.4 6.8E+02 0.015 28.3 23.0 220 36-286 176-404 (686)
160 KOG1332 Vesicle coat complex C 36.2 3.2E+02 0.0068 26.7 9.4 121 27-182 161-295 (299)
161 KOG0293 WD40 repeat-containing 35.0 5.6E+02 0.012 26.9 12.0 173 61-280 292-474 (519)
162 PLN03215 ascorbic acid mannose 34.2 5.6E+02 0.012 26.7 15.2 105 69-185 189-305 (373)
163 KOG2111 Uncharacterized conser 32.2 1.5E+02 0.0033 29.8 6.8 151 44-228 59-215 (346)
164 TIGR01624 LRP1_Cterm LRP1 C-te 32.1 57 0.0012 23.0 2.8 23 408-430 27-49 (50)
165 KOG0296 Angio-associated migra 31.8 5.9E+02 0.013 26.3 15.0 145 43-228 75-223 (399)
166 KOG0302 Ribosome Assembly prot 31.5 4.3E+02 0.0094 27.4 10.0 179 215-420 232-432 (440)
167 PF13088 BNR_2: BNR repeat-lik 31.1 4.8E+02 0.01 25.0 14.2 214 30-256 45-275 (275)
168 PF09826 Beta_propel: Beta pro 31.1 7.3E+02 0.016 27.1 27.7 142 216-374 247-393 (521)
169 KOG0266 WD40 repeat-containing 30.0 7E+02 0.015 26.5 19.5 93 60-178 225-322 (456)
170 PTZ00421 coronin; Provisional 29.1 7.6E+02 0.017 26.7 15.9 64 201-279 138-201 (493)
171 COG3391 Uncharacterized conser 28.9 6.7E+02 0.014 25.9 20.8 165 35-232 76-246 (381)
172 PF05182 Fip1: Fip1 motif; In 27.6 17 0.00037 25.3 -0.4 14 401-414 18-31 (45)
173 KOG0772 Uncharacterized conser 27.1 8.4E+02 0.018 26.5 20.5 70 250-334 374-448 (641)
174 KOG1332 Vesicle coat complex C 25.8 6.4E+02 0.014 24.7 12.7 55 223-285 241-296 (299)
175 KOG1538 Uncharacterized conser 23.5 1.1E+03 0.024 26.6 13.8 59 35-104 16-74 (1081)
176 COG0823 TolB Periplasmic compo 23.3 9E+02 0.02 25.6 12.6 106 109-234 261-368 (425)
177 TIGR02658 TTQ_MADH_Hv methylam 22.9 8.5E+02 0.018 25.1 27.8 116 44-179 13-141 (352)
178 PF14583 Pectate_lyase22: Olig 22.5 9E+02 0.02 25.3 14.1 166 94-285 46-233 (386)
179 KOG3881 Uncharacterized conser 22.2 9.1E+02 0.02 25.2 10.6 89 216-318 225-313 (412)
180 PLN03215 ascorbic acid mannose 22.2 9E+02 0.02 25.1 14.5 100 175-287 189-305 (373)
181 PF07734 FBA_1: F-box associat 22.0 5.6E+02 0.012 22.7 13.9 82 91-183 2-92 (164)
182 KOG1645 RING-finger-containing 22.0 7.4E+02 0.016 26.0 9.7 16 300-315 394-409 (463)
183 KOG0266 WD40 repeat-containing 21.8 9.7E+02 0.021 25.4 14.7 66 200-280 257-322 (456)
184 PF15525 DUF4652: Domain of un 21.5 6.7E+02 0.015 23.4 11.2 71 162-234 84-157 (200)
185 PF11134 Phage_stabilise: Phag 21.0 1E+03 0.022 25.3 13.6 19 268-286 307-329 (469)
186 PHA02816 hypothetical protein; 20.6 48 0.001 25.7 0.9 14 418-431 2-15 (106)
187 PLN02919 haloacid dehalogenase 20.3 1.5E+03 0.033 27.1 33.2 210 43-286 579-843 (1057)
No 1
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.5e-44 Score=370.48 Aligned_cols=302 Identities=27% Similarity=0.426 Sum_probs=242.7
Q ss_pred CCCCCCccceEEEEEcCCCEEEEEcCcCCC-CCCcCeEEEEECCCCeEEeeeccCCCCCC-CCcceEEEECCEEEEEcCC
Q 010011 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKD-NCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTVGENLYVFGGT 103 (520)
Q Consensus 26 g~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~-~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~~~~iyv~GG~ 103 (520)
+..|.+|.+|+++++ +++|||+||.... ....+++|+||+.+++|.+++..+..|.. +.+|++++++++||+|||.
T Consensus 17 ~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 17 GKGPGPRCSHGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGR 94 (341)
T ss_pred CCCCCCCCcceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCC
Confidence 457889999999988 6689999998543 22457899999999999997654444443 4589999999999999999
Q ss_pred CCCCCCCcEEEEECCCCeEEeeccc--CCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEc
Q 010011 104 DGMNPLRDLHILDTSSHTWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (520)
Q Consensus 104 ~~~~~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v 181 (520)
+....++++++||+.+++|+.++.. ...|.+|.+|+++.++++||||||+...........++++++||+.+++|..+
T Consensus 95 ~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l 174 (341)
T PLN02153 95 DEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL 174 (341)
T ss_pred CCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeC
Confidence 8777789999999999999987632 12388999999999999999999985432222223468899999999999999
Q ss_pred ccCCCCCCCCcceeEEeeCCEEEEEecCCCC-------CcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEE
Q 010011 182 TTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNL 254 (520)
Q Consensus 182 ~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~-------~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~i 254 (520)
+..+.+|.+|..|++++++++|||+||.... ...++++++||+++++|+++...+.+|.+|..|+++.++++|
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~i 254 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYI 254 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEE
Confidence 8776677899999999999999999996421 123678999999999999998777789999999999999999
Q ss_pred EEEecccC--------CCCccCcEEEEecCCCcEEEeeeCCCCCCCc--eeeeeeeeccccCCEEEEEcccCCCCCccCc
Q 010011 255 FVFGGFTD--------SQNLYDDLYMIDVDSGLWTKVITTGEGPSAR--FSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 324 (520)
Q Consensus 255 yv~GG~~~--------~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r--~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d 324 (520)
|||||... .....+++|+||+++++|+.+...+.+|.+| ..++++.+ ..++.|||+||++.....++|
T Consensus 255 yv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v--~~~~~~~~~gG~~~~~~~~~~ 332 (341)
T PLN02153 255 IIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATV--YGKNGLLMHGGKLPTNERTDD 332 (341)
T ss_pred EEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCcccccccccc--CCcceEEEEcCcCCCCccccc
Confidence 99999742 2345689999999999999997654444444 33333222 445689999999888789999
Q ss_pred eEeeecc
Q 010011 325 MYYLYTG 331 (520)
Q Consensus 325 v~~l~~~ 331 (520)
+|+++..
T Consensus 333 ~~~~~~~ 339 (341)
T PLN02153 333 LYFYAVN 339 (341)
T ss_pred eEEEecc
Confidence 9998643
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.9e-44 Score=379.46 Aligned_cols=298 Identities=28% Similarity=0.432 Sum_probs=250.6
Q ss_pred cCCCCCCccceEEEEEcCCCEEEEEcCcCCCCC-CcCeEEEEECCCCeEEeeeccCCCCC-CCCcceEEEECCEEEEEcC
Q 010011 25 SSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNC-QTNQVHVFDTVNQTWSQPVIKGSPPT-PRDSHSCTTVGENLYVFGG 102 (520)
Q Consensus 25 ~g~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~-~~~~~~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~iyv~GG 102 (520)
.+..|.+|.+|+++++ +++||++||...... ..+++|+||+.+++|..++..+.+|. .|.+|++++++++||||||
T Consensus 159 ~~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG 236 (470)
T PLN02193 159 KGEGPGLRCSHGIAQV--GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGG 236 (470)
T ss_pred CCCCCCCccccEEEEE--CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECC
Confidence 3457899999999998 668999999854332 34689999999999999776666665 4678999999999999999
Q ss_pred CCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc
Q 010011 103 TDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (520)
Q Consensus 103 ~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~ 182 (520)
.+....++++|+||+.+++|++++..+..|.+|+.|+++.++++||||||+. ....++++++||+.+++|+.++
T Consensus 237 ~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~------~~~~~~~~~~yd~~t~~W~~~~ 310 (470)
T PLN02193 237 RDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVS------ATARLKTLDSYNIVDKKWFHCS 310 (470)
T ss_pred CCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCC------CCCCcceEEEEECCCCEEEeCC
Confidence 9887788999999999999999875555689999999999999999999964 2335689999999999999998
Q ss_pred cCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccC
Q 010011 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (520)
Q Consensus 183 ~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 262 (520)
..+.+|.+|..|++++++++||++||.++. ..+++++||+++++|+.+...+..|.+|..|+++.++++|||+||...
T Consensus 311 ~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~ 388 (470)
T PLN02193 311 TPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIA 388 (470)
T ss_pred CCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccC
Confidence 776788999999999999999999998654 468999999999999999887677899999999999999999999853
Q ss_pred --------CCCccCcEEEEecCCCcEEEeeeCC---CCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecc
Q 010011 263 --------SQNLYDDLYMIDVDSGLWTKVITTG---EGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (520)
Q Consensus 263 --------~~~~~~dv~~yd~~~~~W~~l~~~~---~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (520)
.....+++|+||+++++|+.+...+ ..|.+|..++++......++.||+|||.+.....++|+|+|+++
T Consensus 389 ~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~ 468 (470)
T PLN02193 389 MDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID 468 (470)
T ss_pred CccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence 1235689999999999999998654 35788876654332223456699999999888899999999876
Q ss_pred c
Q 010011 332 L 332 (520)
Q Consensus 332 ~ 332 (520)
.
T Consensus 469 ~ 469 (470)
T PLN02193 469 S 469 (470)
T ss_pred C
Confidence 3
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.2e-44 Score=332.27 Aligned_cols=311 Identities=28% Similarity=0.524 Sum_probs=261.4
Q ss_pred CccceEEEEEcCCCEEEEEcCcCCCC----CCcCeEEEEECCCCeEEeeec----------cCCCCCCCCcceEEEECCE
Q 010011 31 KRWGHTCNAIKGGRFLYVFGGYGKDN----CQTNQVHVFDTVNQTWSQPVI----------KGSPPTPRDSHSCTTVGEN 96 (520)
Q Consensus 31 ~R~ghs~~~v~~g~~Iyi~GG~~~~~----~~~~~~~~yd~~t~~W~~l~~----------~g~~P~~R~~hs~~~~~~~ 96 (520)
.|.+|++++| |.+||.|||+.... ...-+++++|..+.+|.+++. -+-.|..|++|+++.++++
T Consensus 13 rRVNHAavaV--G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 13 RRVNHAAVAV--GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred ccccceeeee--cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 7999999999 88999999984432 123479999999999998763 1123667999999999999
Q ss_pred EEEEcCCCC-CCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCc
Q 010011 97 LYVFGGTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 175 (520)
Q Consensus 97 iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t 175 (520)
+||+||+++ .+..|-+|+||+.++.|.++++.|-+|.+|.+|++|++++.+|||||+. .....+.++++.+|+.|
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye----~~a~~FS~d~h~ld~~T 166 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYE----EDAQRFSQDTHVLDFAT 166 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChH----HHHHhhhccceeEeccc
Confidence 999999987 5688999999999999999999999999999999999999999999986 34567899999999999
Q ss_pred ceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCC--------CcccCceEEEECCCCcEEEeeCCCCCCCCCceeEE
Q 010011 176 FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH--------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (520)
Q Consensus 176 ~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~--------~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~ 247 (520)
-+|+.+.+.+.+|.-|.+|+++++++.+|||||.... ..+.+.|..+|++|+.|......+..|..|..|++
T Consensus 167 mtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~ 246 (392)
T KOG4693|consen 167 MTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHST 246 (392)
T ss_pred eeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccce
Confidence 9999999999999999999999999999999998543 35678899999999999999888888999999999
Q ss_pred EEECCEEEEEecccCCC-CccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCC----Ccc
Q 010011 248 VAFGKNLFVFGGFTDSQ-NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL----EAL 322 (520)
Q Consensus 248 ~~~~~~iyv~GG~~~~~-~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~----~~~ 322 (520)
...+++||+|||++... .-++|+|+||+.+..|..|...+..|++|..+++++ .++++|+|||-.... +..
T Consensus 247 fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v----~g~kv~LFGGTsP~~~~~~Spt 322 (392)
T KOG4693|consen 247 FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVV----SGGKVYLFGGTSPLPCHPLSPT 322 (392)
T ss_pred EEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEE----ECCEEEEecCCCCCCCCCCCcc
Confidence 99999999999998643 357999999999999999999999999999888665 489999999965420 000
Q ss_pred CceEe-eeccccccccccchhhhhhhhhhc
Q 010011 323 DDMYY-LYTGLVNERKLEKLSLRKQLKLKC 351 (520)
Q Consensus 323 ~dv~~-l~~~~~~~~~~~~l~~~k~l~~~~ 351 (520)
+..=. -...+..-++|..|++.+.||.-+
T Consensus 323 ~~~G~~~~~~LiD~SDLHvLDF~PsLKTLa 352 (392)
T KOG4693|consen 323 NYNGMISPSGLIDLSDLHVLDFAPSLKTLA 352 (392)
T ss_pred ccCCCCCcccccccccceeeecChhHHHHH
Confidence 00000 112234456777888887777433
No 4
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1e-40 Score=354.57 Aligned_cols=390 Identities=35% Similarity=0.553 Sum_probs=318.2
Q ss_pred eecCCCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcC-eEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEc
Q 010011 23 EISSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTN-QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (520)
Q Consensus 23 ~~~g~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~-~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~G 101 (520)
...+..|.+|++|+++.+ ++++|||||........+ ++|++|..+..|....+.+..|.+|++|++++++++||+||
T Consensus 52 ~~~~~~p~~R~~hs~~~~--~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLI--GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred ccCCCCcchhhccceeEE--CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 356789999999999999 779999999976654444 69999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE
Q 010011 102 GTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (520)
Q Consensus 102 G~~~-~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~ 180 (520)
|.+. ...+++++.||+.|++|..+...+.+|.+|.+|+++.++++||||||++.. ....|++|+||+.+.+|.+
T Consensus 130 G~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~-----~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT-----GDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred cccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCc-----ccceeeeeeecccccccee
Confidence 9985 667899999999999999999999999999999999999999999997533 2278999999999999999
Q ss_pred cccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecc
Q 010011 181 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF 260 (520)
Q Consensus 181 v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~ 260 (520)
+.+.+..|.||.+|++++++++++|+||....+.+++|+|.||+.+.+|..+...+..|.+|++|+++..+++++++||.
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred cccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 99999999999999999999999999999877779999999999999999998889999999999999999999999999
Q ss_pred cCCCC-ccCcEEEEecCCCcEEEeeeCC-CCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecccc----c
Q 010011 261 TDSQN-LYDDLYMIDVDSGLWTKVITTG-EGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV----N 334 (520)
Q Consensus 261 ~~~~~-~~~dv~~yd~~~~~W~~l~~~~-~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~----~ 334 (520)
..... .+.++|.||+++..|..+.... ..|.+|..++..++.......+.++||........++++.+..... .
T Consensus 285 ~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (482)
T KOG0379|consen 285 TDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRKNE 364 (482)
T ss_pred cccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccccCCc
Confidence 87544 6899999999999999999887 7899999999988877777778888887777777788876554432 2
Q ss_pred cccccchhhhhhhhhhccccccCccccceeEEeccccCCCCCCCccccCCCCCCCcCCCcccceeeeEeeeecCcceEEE
Q 010011 335 ERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLNEGKKTFQAKVTESFPLGYTIE 414 (520)
Q Consensus 335 ~~~~~~l~~~k~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~g~k~f~~~~~~~~~~~~~~~ 414 (520)
+.+.......+.....+.+...... .......... .........+....+.|+..++...-...|++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
T KOG0379|consen 365 VQEPGTRAVEKVLALFRAESSAICI-------AELLYHERRR-----RNDSLKNTLQVKELSILCLDRIGLETFEKYTQE 432 (482)
T ss_pred ccccccccchhhHhhhhccccccch-------HHhhhcchhh-----hcccccceecccchhhhhhhhhhhhccchhhhh
Confidence 3333434444444433333220000 0000000000 011111233444677888888888999999999
Q ss_pred EeEcCceeeeeeeecCC
Q 010011 415 TTIDGKPLRGILFANKP 431 (520)
Q Consensus 415 ~~~~~~~~~~~~~~~~~ 431 (520)
.+++..-...+.|.++-
T Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (482)
T KOG0379|consen 433 SLTLFLFGGNVDLTEES 449 (482)
T ss_pred hhhhhhhccccCcchhc
Confidence 99988888888877765
No 5
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.9e-41 Score=336.50 Aligned_cols=301 Identities=31% Similarity=0.540 Sum_probs=259.7
Q ss_pred cCCCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCC
Q 010011 25 SSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD 104 (520)
Q Consensus 25 ~g~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~ 104 (520)
.|+-|.+|.||.++++ ...|+||||.++. ..+++++||..+++|..+.+.|+.|.+.+.|+++..+.+||+|||+.
T Consensus 26 tGPvPrpRHGHRAVai--kELiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMv 101 (830)
T KOG4152|consen 26 TGPVPRPRHGHRAVAI--KELIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMV 101 (830)
T ss_pred cCCCCCccccchheee--eeeEEEecCCccc--chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEe
Confidence 7889999999999999 4589999997664 66899999999999999999999999999999999999999999997
Q ss_pred CC-CCCCcEEEEECCCCeEEeec----ccCCCCCCCCCceEEEECCEEEEEeCCCCCCC---CCCcceeceeEEEEcCcc
Q 010011 105 GM-NPLRDLHILDTSSHTWISPS----VRGEGPEAREGHSAALVGKRLFIFGGCGKSSN---TNDEVYYNDLYILNTETF 176 (520)
Q Consensus 105 ~~-~~~~~~~~yd~~t~~W~~~~----~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~---~~~~~~~~~v~~~d~~t~ 176 (520)
.. ++.||+|.+......|+++. ..|.+|.||.+|+.+.++++.|+|||..++.+ ++-..|+||+|++++...
T Consensus 102 EYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~G 181 (830)
T KOG4152|consen 102 EYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPG 181 (830)
T ss_pred eeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccC
Confidence 65 57899999988888898654 46779999999999999999999999865433 344688999999999743
Q ss_pred ----eEEEcccCCCCCCCCcceeEEee------CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeE
Q 010011 177 ----VWKRATTSGNPPSARDSHTCSSW------KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS 246 (520)
Q Consensus 177 ----~W~~v~~~~~~p~~r~~h~~~~~------~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs 246 (520)
-|....+.|..|.+|.+|+++++ ..++||+||+.+. .+.|+|.+|+++.+|.+....|..|.||..|+
T Consensus 182 sgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHs 259 (830)
T KOG4152|consen 182 SGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHS 259 (830)
T ss_pred CceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCCCCccccc
Confidence 69999999999999999999998 3479999999865 79999999999999999999999999999999
Q ss_pred EEEECCEEEEEecccCC-------------CCccCcEEEEecCCCcEEEeee----CCCCCCCceeeeeeeeccccCCEE
Q 010011 247 TVAFGKNLFVFGGFTDS-------------QNLYDDLYMIDVDSGLWTKVIT----TGEGPSARFSVAGDCLDPLKGGVL 309 (520)
Q Consensus 247 ~~~~~~~iyv~GG~~~~-------------~~~~~dv~~yd~~~~~W~~l~~----~~~~p~~r~~~~~~~~~~~~~~~l 309 (520)
++.++++||||||+..- -++.+.+-++|+.+..|+.+.. ....|++|.+|+++.+ +.+|
T Consensus 260 a~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi----gtRl 335 (830)
T KOG4152|consen 260 ATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI----GTRL 335 (830)
T ss_pred ceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe----ccEE
Confidence 99999999999998521 1256889999999999998742 2247999988887654 7889
Q ss_pred EEEcccCCC------CCccCceEeeecccccc
Q 010011 310 VFIGGCNKS------LEALDDMYYLYTGLVNE 335 (520)
Q Consensus 310 ~v~GG~~~~------~~~~~dv~~l~~~~~~~ 335 (520)
|+.-|.++- ...+.|+|+||++....
T Consensus 336 YiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~ 367 (830)
T KOG4152|consen 336 YIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPP 367 (830)
T ss_pred EEEeccchhhHhhccccchhhhhhhcccCCCC
Confidence 998887643 34678999999987653
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.6e-38 Score=335.64 Aligned_cols=293 Identities=26% Similarity=0.387 Sum_probs=241.4
Q ss_pred ccceEEEEEcCCCEEEEEcCcCCCCCCcCeE--EEEECCC----CeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCC
Q 010011 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQV--HVFDTVN----QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG 105 (520)
Q Consensus 32 R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~--~~yd~~t----~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~ 105 (520)
..+...+ + .+++|+.|+|.... ..+.+ |.+++.+ ++|.++...+.+|.+|.+|+++.++++|||+||...
T Consensus 111 ~~g~~f~-~-~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~ 186 (470)
T PLN02193 111 RPGVKFV-L-QGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFT 186 (470)
T ss_pred CCCCEEE-E-cCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCC
Confidence 3454444 3 36789999997554 34444 4446644 899998877778999999999999999999999853
Q ss_pred C-C-CCCcEEEEECCCCeEEeecccCCCCC-CCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc
Q 010011 106 M-N-PLRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (520)
Q Consensus 106 ~-~-~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~ 182 (520)
. . ..+++|+||+.+++|+.++..+++|. .|.+|+++.++++||||||+.. ...++++|+||+.+++|+++.
T Consensus 187 ~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~------~~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 187 PNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA------SRQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred CCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC------CCCCccEEEEECCCCEEEEcC
Confidence 2 2 34789999999999998876666665 4678999999999999999642 235789999999999999998
Q ss_pred cCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccC
Q 010011 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (520)
Q Consensus 183 ~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 262 (520)
+.+..|.+|..|+++.++++|||+||.+... .++++++||+.+++|+.++..+.++.+|.+|+++.++++|||+||...
T Consensus 261 ~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g 339 (470)
T PLN02193 261 PVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG 339 (470)
T ss_pred cCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC
Confidence 6666689999999999999999999987654 678999999999999999876667889999999999999999999854
Q ss_pred CCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC--------CCccCceEeeeccccc
Q 010011 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVN 334 (520)
Q Consensus 263 ~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~dv~~l~~~~~~ 334 (520)
..++++++||+++++|+.+.+.+..|.+|..|+++.+ +++|||+||.... ...++|+|.||+.+..
T Consensus 340 --~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 340 --CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred --CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 2468999999999999999988778899988876544 7899999998641 2356899999999999
Q ss_pred cccccch
Q 010011 335 ERKLEKL 341 (520)
Q Consensus 335 ~~~~~~l 341 (520)
|..+..+
T Consensus 414 W~~~~~~ 420 (470)
T PLN02193 414 WERLDKF 420 (470)
T ss_pred EEEcccC
Confidence 9877554
No 7
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=300.89 Aligned_cols=251 Identities=29% Similarity=0.577 Sum_probs=222.8
Q ss_pred CceeEeccCCcccccccceeeeeecC---CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeec
Q 010011 1 MRWEKVQPKSPQALVAQQLVSSEISS---SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVI 77 (520)
Q Consensus 1 ~~W~~~~~~~~~~~~~~~~~~~~~~g---~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~ 77 (520)
|||.++++.-.+ ..+++ ..|-.|+||+.+.. .+++||+||.+.+....|.+|.||+.++.|+++.+
T Consensus 54 ~RWtk~pp~~~k---------a~i~~~yp~VPyqRYGHtvV~y--~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v 122 (392)
T KOG4693|consen 54 YRWTKMPPGITK---------ATIESPYPAVPYQRYGHTVVEY--QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEV 122 (392)
T ss_pred eeEEecCccccc---------ccccCCCCccchhhcCceEEEE--cceEEEEcCccCcccccceeeeeccccccccccce
Confidence 689999963211 12233 34567999999999 45899999998877778899999999999999999
Q ss_pred cCCCCCCCCcceEEEECCEEEEEcCCCC--CCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCC
Q 010011 78 KGSPPTPRDSHSCTTVGENLYVFGGTDG--MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGK 155 (520)
Q Consensus 78 ~g~~P~~R~~hs~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~ 155 (520)
.|..|.+|.+|+++++++.+|||||+.. ....++++++|++|.+|+.+.+.|.+|.-|..|+++++++.+|||||+.+
T Consensus 123 ~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D 202 (392)
T KOG4693|consen 123 EGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSD 202 (392)
T ss_pred eeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccc
Confidence 9999999999999999999999999964 35679999999999999999999999999999999999999999999865
Q ss_pred CC---CCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCC-CcccCceEEEECCCCcEEE
Q 010011 156 SS---NTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTLTWKE 231 (520)
Q Consensus 156 ~~---~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~-~~~~~~i~~yd~~t~~W~~ 231 (520)
.. -...+.|.+.+..+|+.|..|...++.+..|..|.+|++.+++++||+|||+++. +.-.+++|+|||.+..|..
T Consensus 203 ~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~ 282 (392)
T KOG4693|consen 203 ESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSV 282 (392)
T ss_pred cCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchhee
Confidence 42 2335678899999999999999999888899999999999999999999999875 4568999999999999999
Q ss_pred eeCCCCCCCCCceeEEEEECCEEEEEecccC
Q 010011 232 LNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (520)
Q Consensus 232 ~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 262 (520)
+...|..|.+|..+++++.++++|+|||...
T Consensus 283 I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 283 ISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999999999999999999999864
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8e-38 Score=337.48 Aligned_cols=271 Identities=23% Similarity=0.419 Sum_probs=241.7
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCC-CCCCCCcEEEEECCCCe
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-GMNPLRDLHILDTSSHT 121 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~ 121 (520)
...||++||........+.+..||+.+++|..+. ++|.+|..+++++++++||++||++ +...++.+|+||+.+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 4579999999864557788999999999999966 8999999999999999999999999 78899999999999999
Q ss_pred EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCC
Q 010011 122 WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKN 201 (520)
Q Consensus 122 W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~ 201 (520)
|+.++ +|..+|.+++++++++.||++||.+ +..+++.+++||+.+++|..+. +++.+|++|+++++++
T Consensus 361 W~~~a---~M~~~R~~~~v~~l~g~iYavGG~d------g~~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 361 WTPVA---PMNTKRSDFGVAVLDGKLYAVGGFD------GEKSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGG 428 (571)
T ss_pred eeccC---CccCccccceeEEECCEEEEEeccc------cccccccEEEecCCCCcccccC---CCCcceeeeEEEEECC
Confidence 99987 8999999999999999999999964 6677899999999999999998 6788999999999999
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
+||++||.++...+++.+++|||.+++|+.+++ ++.+|.++++++++++||++||+++ ...+..+++||+++++|+
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~---M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP---MNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWT 504 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCC---cccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCcee
Confidence 999999998887789999999999999999998 9999999999999999999999987 556777999999999999
Q ss_pred EeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccccccccc
Q 010011 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (520)
Q Consensus 282 ~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (520)
.+.++ +.+|..+..+ ..++++|++||++.. ..++.+..++..+..|+....
T Consensus 505 ~v~~m---~~~rs~~g~~----~~~~~ly~vGG~~~~-~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 505 MVAPM---TSPRSAVGVV----VLGGKLYAVGGFDGN-NNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EcccC---ccccccccEE----EECCEEEEEecccCc-cccceeEEcCCCCCceeeCCC
Confidence 99665 4455444433 348999999997765 677888889999888876654
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.8e-36 Score=306.97 Aligned_cols=264 Identities=29% Similarity=0.448 Sum_probs=214.3
Q ss_pred CCCCeEEeeecc-CCCCCCCCcceEEEECCEEEEEcCCCCC--CCCCcEEEEECCCCeEEeecccCCCCCC-CCCceEEE
Q 010011 67 TVNQTWSQPVIK-GSPPTPRDSHSCTTVGENLYVFGGTDGM--NPLRDLHILDTSSHTWISPSVRGEGPEA-REGHSAAL 142 (520)
Q Consensus 67 ~~t~~W~~l~~~-g~~P~~R~~hs~~~~~~~iyv~GG~~~~--~~~~~~~~yd~~t~~W~~~~~~g~~p~~-r~~hs~~~ 142 (520)
+...+|.++... +.+|.+|.+|++++++++|||+||.... ...+++|+||+.+++|+.++..+..|.. +.+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 356789998753 4579999999999999999999998542 3458999999999999988754444443 45789999
Q ss_pred ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccC--CCCCCCCcceeEEeeCCEEEEEecCCCCC-----cc
Q 010011 143 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS--GNPPSARDSHTCSSWKNKIIVIGGEDGHD-----YY 215 (520)
Q Consensus 143 ~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~--~~~p~~r~~h~~~~~~~~lyv~GG~~~~~-----~~ 215 (520)
++++||||||... ...++++++||+.+++|+.++.. ...|.+|..|++++.+++|||+||..... ..
T Consensus 84 ~~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 84 VGTKLYIFGGRDE------KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred ECCEEEEECCCCC------CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcc
Confidence 9999999999642 23468999999999999998743 12388999999999999999999986432 24
Q ss_pred cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCC-------CCccCcEEEEecCCCcEEEeeeCCC
Q 010011 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS-------QNLYDDLYMIDVDSGLWTKVITTGE 288 (520)
Q Consensus 216 ~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~-------~~~~~dv~~yd~~~~~W~~l~~~~~ 288 (520)
++++++||+++++|+.+...+..+.+|.+|+++.++++|||+||.... ...++++++||+++++|+.+...+.
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~ 237 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA 237 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence 578999999999999998766667899999999999999999997521 1236889999999999999988777
Q ss_pred CCCCceeeeeeeeccccCCEEEEEcccCC--------CCCccCceEeeeccccccccccc
Q 010011 289 GPSARFSVAGDCLDPLKGGVLVFIGGCNK--------SLEALDDMYYLYTGLVNERKLEK 340 (520)
Q Consensus 289 ~p~~r~~~~~~~~~~~~~~~l~v~GG~~~--------~~~~~~dv~~l~~~~~~~~~~~~ 340 (520)
.|.+|..|+++++ +++||||||... .....+|+|.||+.+..|..+..
T Consensus 238 ~P~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 238 KPSARSVFAHAVV----GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred CCCCcceeeeEEE----CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 7889988886654 789999999742 22346799999999999977643
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=326.23 Aligned_cols=242 Identities=16% Similarity=0.227 Sum_probs=208.8
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM 106 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~ 106 (520)
+.|.+|.+|+++++ +++||++||........+.+++||+.+++|..++ ++|.+|..+++++++++||++||.++.
T Consensus 289 ~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~ 363 (557)
T PHA02713 289 TIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGT 363 (557)
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCC
Confidence 56778889988888 6689999998543345688999999999999865 899999999999999999999999877
Q ss_pred CCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCC------------CCcceeceeEEEEcC
Q 010011 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNT------------NDEVYYNDLYILNTE 174 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~------------~~~~~~~~v~~~d~~ 174 (520)
..++++++||+.+++|+.++ ++|.+|.++++++++++||++||....... ......+.+++||+.
T Consensus 364 ~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 364 NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred CCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 77889999999999999887 899999999999999999999997532100 011236789999999
Q ss_pred cceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCC-CcEEEeeCCCCCCCCCceeEEEEECCE
Q 010011 175 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVAFGKN 253 (520)
Q Consensus 175 t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W~~~~~~~~~p~~R~~hs~~~~~~~ 253 (520)
+++|+.++ +++.+|..+++++++++|||+||.++.....+.+++|||++ ++|+.+.. +|.+|..+.++.++++
T Consensus 441 td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---m~~~r~~~~~~~~~~~ 514 (557)
T PHA02713 441 NNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---TESRLSALHTILHDNT 514 (557)
T ss_pred CCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---cCcccccceeEEECCE
Confidence 99999998 78899999999999999999999875443445689999999 89999987 8999999999999999
Q ss_pred EEEEecccCCCCccCcEEEEecCCCcEEEeeeC
Q 010011 254 LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 254 iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
||++||+.+. ..+++||+.+++|+.+.+.
T Consensus 515 iyv~Gg~~~~----~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 515 IMMLHCYESY----MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred EEEEeeecce----eehhhcCcccccccchhhh
Confidence 9999998752 4689999999999988654
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.9e-35 Score=300.94 Aligned_cols=274 Identities=19% Similarity=0.259 Sum_probs=212.1
Q ss_pred CCccceEEEEEcCCCEEEEEcCcCCCC---------CCcCeEEEEECCC--CeEEeeeccCCCCCCCCcceEEEECCEEE
Q 010011 30 GKRWGHTCNAIKGGRFLYVFGGYGKDN---------CQTNQVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLY 98 (520)
Q Consensus 30 ~~R~ghs~~~v~~g~~Iyi~GG~~~~~---------~~~~~~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~iy 98 (520)
..+.+|.++++ +++|||+||.+... ...+++++|+... .+|..+. ++|.+|..+++++++++||
T Consensus 2 ~~~~g~~~~~~--~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII--GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE--CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEE
Confidence 46788999999 67899999986542 2346788886333 3798854 8899999999999999999
Q ss_pred EEcCCCCCCCCCcEEEEECCCCeEE-eecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce
Q 010011 99 VFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (520)
Q Consensus 99 v~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~ 177 (520)
++||.++...++++++||+.+++|+ ......++|.+|..|++++++++|||+||.. .....+++++||+.+++
T Consensus 77 viGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~------~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 77 YIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR------NGKPSNKSYLFNLETQE 150 (323)
T ss_pred EEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC------CCccCceEEEEcCCCCC
Confidence 9999988778899999999999983 2222348999999999999999999999963 22346899999999999
Q ss_pred EEEcccCCCCC-CCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCC--CCCCCceeEEE-EECCE
Q 010011 178 WKRATTSGNPP-SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM--VLSPRAGHSTV-AFGKN 253 (520)
Q Consensus 178 W~~v~~~~~~p-~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~--~p~~R~~hs~~-~~~~~ 253 (520)
|+.++ ++| .+|..|+++.++++|||+||.+.. ...++++||+++++|+.+..... .|..+.+++++ ..+++
T Consensus 151 W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 151 WFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred eeECC---CCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 99997 444 478899999999999999998654 34678999999999999876322 23334445444 45789
Q ss_pred EEEEecccCCC-------------------------------CccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeec
Q 010011 254 LFVFGGFTDSQ-------------------------------NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 302 (520)
Q Consensus 254 iyv~GG~~~~~-------------------------------~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~ 302 (520)
|||+||.+... .+.+++++||+++++|+.+..++ ..+|..++++.
T Consensus 226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~~r~~~~~~~-- 301 (323)
T TIGR03548 226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP--FFARCGAALLL-- 301 (323)
T ss_pred EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc--ccccCchheEE--
Confidence 99999986321 12467999999999999997542 24676665543
Q ss_pred cccCCEEEEEcccCCCCCccCce
Q 010011 303 PLKGGVLVFIGGCNKSLEALDDM 325 (520)
Q Consensus 303 ~~~~~~l~v~GG~~~~~~~~~dv 325 (520)
.++.||++||......+..++
T Consensus 302 --~~~~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 302 --TGNNIFSINGELKPGVRTPDI 322 (323)
T ss_pred --ECCEEEEEeccccCCcCCcCc
Confidence 388999999987766555444
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.2e-35 Score=303.41 Aligned_cols=278 Identities=23% Similarity=0.303 Sum_probs=216.1
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEEC--CCCeEEeeeccCCCC-CCCCcceEEEECCEEEEEcCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDT--VNQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~--~t~~W~~l~~~g~~P-~~R~~hs~~~~~~~iyv~GG~ 103 (520)
+.|.+|..++++++ +++|||+||... +.+++||+ .+++|.+++ ++| .+|..|++++++++||++||.
T Consensus 3 ~lp~~~~~~~~~~~--~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~ 72 (346)
T TIGR03547 3 DLPVGFKNGTGAII--GDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGI 72 (346)
T ss_pred CCCccccCceEEEE--CCEEEEEccccC-----CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCC
Confidence 35778888887777 668999999732 56899996 578999965 777 589999999999999999998
Q ss_pred CCCC------CCCcEEEEECCCCeEEeecccCCCCCCCCCceEE-EECCEEEEEeCCCCCCCC-----------------
Q 010011 104 DGMN------PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNT----------------- 159 (520)
Q Consensus 104 ~~~~------~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~~----------------- 159 (520)
.... .++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||+......
T Consensus 73 ~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T TIGR03547 73 GKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD 150 (346)
T ss_pred CCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence 5422 47899999999999999862 467788888777 789999999997421000
Q ss_pred -----------CCcceeceeEEEEcCcceEEEcccCCCCCC-CCcceeEEeeCCEEEEEecCCCCCcccCceEEEE--CC
Q 010011 160 -----------NDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD--TD 225 (520)
Q Consensus 160 -----------~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~-~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd--~~ 225 (520)
.....++++++||+.+++|+.++ ++|. +|..++++.++++|||+||.........+++.|| ++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~ 227 (346)
T TIGR03547 151 KLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG 227 (346)
T ss_pred hhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCC
Confidence 00012478999999999999997 5664 6888999999999999999865443345566665 57
Q ss_pred CCcEEEeeCCCCCCCCC-------ceeEEEEECCEEEEEecccCCC----------------CccCcEEEEecCCCcEEE
Q 010011 226 TLTWKELNTSGMVLSPR-------AGHSTVAFGKNLFVFGGFTDSQ----------------NLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 226 t~~W~~~~~~~~~p~~R-------~~hs~~~~~~~iyv~GG~~~~~----------------~~~~dv~~yd~~~~~W~~ 282 (520)
+++|+.+.. +|.+| .+|+++.++++|||+||..... .....+++||+++++|+.
T Consensus 228 ~~~W~~~~~---m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 304 (346)
T TIGR03547 228 KLEWNKLPP---LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK 304 (346)
T ss_pred CceeeecCC---CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc
Confidence 789999887 55443 4677888999999999985311 012468999999999999
Q ss_pred eeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeee
Q 010011 283 VITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 329 (520)
Q Consensus 283 l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~ 329 (520)
+.++ |.+|..++++ ..+++|||+||.+.....++|++++.
T Consensus 305 ~~~l---p~~~~~~~~~----~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 305 VGKL---PQGLAYGVSV----SWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cCCC---CCCceeeEEE----EcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 8765 6677666543 34899999999998888999999774
No 13
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-36 Score=322.96 Aligned_cols=263 Identities=14% Similarity=0.149 Sum_probs=219.7
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCC-CCCCCCcEEEEECCCCeEE
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-GMNPLRDLHILDTSSHTWI 123 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~ 123 (520)
.|++.||... .....+++||+.+++|..++ ++|.+|.+|++++++++||++||.+ +...++++++||+.+++|.
T Consensus 259 ~l~~~~g~~~--~~~~~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~ 333 (557)
T PHA02713 259 CLVCHDTKYN--VCNPCILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV 333 (557)
T ss_pred EEEEecCccc--cCCCCEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe
Confidence 4566665211 12346899999999999976 8899999999999999999999986 3446789999999999999
Q ss_pred eecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEE
Q 010011 124 SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKI 203 (520)
Q Consensus 124 ~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~l 203 (520)
.++ ++|.+|..+++++++++||++||.. +....+++++||+.+++|..++ ++|.+|..+++++++++|
T Consensus 334 ~~~---~m~~~R~~~~~~~~~g~IYviGG~~------~~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~I 401 (557)
T PHA02713 334 ELP---PMIKNRCRFSLAVIDDTIYAIGGQN------GTNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYI 401 (557)
T ss_pred eCC---CCcchhhceeEEEECCEEEEECCcC------CCCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEE
Confidence 887 8999999999999999999999963 2234678999999999999998 789999999999999999
Q ss_pred EEEecCCCCC-----------------cccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCc
Q 010011 204 IVIGGEDGHD-----------------YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (520)
Q Consensus 204 yv~GG~~~~~-----------------~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~ 266 (520)
|++||.++.. ..++.+++|||++++|+.+++ ++.+|..++++.++++|||+||.++....
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~---m~~~r~~~~~~~~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN---FWTGTIRPGVVSHKDDIYVVCDIKDEKNV 478 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC---CCcccccCcEEEECCEEEEEeCCCCCCcc
Confidence 9999986431 125789999999999999987 88999999999999999999998754434
Q ss_pred cCcEEEEecCC-CcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccccccc
Q 010011 267 YDDLYMIDVDS-GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKL 338 (520)
Q Consensus 267 ~~dv~~yd~~~-~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~ 338 (520)
.+.+++||+++ ++|+.+.++ |.+|..+.++++ +++||++||++.. ..+.++|..+..|..+
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~----~~~iyv~Gg~~~~----~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELITTT---ESRLSALHTILH----DNTIMMLHCYESY----MLQDTFNVYTYEWNHI 540 (557)
T ss_pred ceeEEEecCCCCCCeeEcccc---CcccccceeEEE----CCEEEEEeeecce----eehhhcCcccccccch
Confidence 45689999999 899998765 777877766554 8999999998863 3577888888887544
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=9.6e-36 Score=321.36 Aligned_cols=238 Identities=26% Similarity=0.478 Sum_probs=215.7
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM 106 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~ 106 (520)
+.|.+|..++++++ +++||++||++.+....+.+++||+.+++|.+++ +|+.+|.+++++++++.||++||+++.
T Consensus 318 ~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 318 PMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGE 392 (571)
T ss_pred CCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEeccccc
Confidence 56778888888888 5689999999854447789999999999999965 999999999999999999999999999
Q ss_pred CCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCC
Q 010011 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~ 186 (520)
+.++.+++||+.+++|+.+. +++.+|++|+++..+++||++||+.. ...+++.+++||+.+++|+.++ +
T Consensus 393 ~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~-----~~~~l~sve~YDP~t~~W~~~~---~ 461 (571)
T KOG4441|consen 393 KSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDG-----SSNCLNSVECYDPETNTWTLIA---P 461 (571)
T ss_pred cccccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCC-----CccccceEEEEcCCCCceeecC---C
Confidence 99999999999999999887 88899999999999999999999642 2227899999999999999999 8
Q ss_pred CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCc
Q 010011 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (520)
Q Consensus 187 ~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~ 266 (520)
|+.+|.++++++++++||++||.++ ...+..+++|||++++|+.+.. +..+|..+.++..++++|++||+.. ...
T Consensus 462 M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~---m~~~rs~~g~~~~~~~ly~vGG~~~-~~~ 536 (571)
T KOG4441|consen 462 MNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAP---MTSPRSAVGVVVLGGKLYAVGGFDG-NNN 536 (571)
T ss_pred cccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEccc---CccccccccEEEECCEEEEEecccC-ccc
Confidence 8999999999999999999999988 4467779999999999999976 8899999999999999999999654 567
Q ss_pred cCcEEEEecCCCcEEEeee
Q 010011 267 YDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 267 ~~dv~~yd~~~~~W~~l~~ 285 (520)
++.+..||+++++|+.+..
T Consensus 537 l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 537 LNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cceeEEcCCCCCceeeCCC
Confidence 8999999999999998865
No 15
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=290.27 Aligned_cols=261 Identities=29% Similarity=0.546 Sum_probs=227.2
Q ss_pred eeecCCCCCCccceEEEEEcCCCEEEEEcCcC---CCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEEC-CEE
Q 010011 22 SEISSSGPGKRWGHTCNAIKGGRFLYVFGGYG---KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENL 97 (520)
Q Consensus 22 ~~~~g~~P~~R~ghs~~~v~~g~~Iyi~GG~~---~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~i 97 (520)
.+.+.++|.||...+.++-+..+-|++|||.- ......+++|.||+.+++|+++. .+..|.||.+|.++++. |.+
T Consensus 57 ~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l 135 (521)
T KOG1230|consen 57 VETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNIL 135 (521)
T ss_pred eeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEec-cCCCcCCCccceeEEeccCeE
Confidence 34467899999999999988888899999962 22335789999999999999987 67889999999999996 899
Q ss_pred EEEcCCCCC------CCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 98 YVFGGTDGM------NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 98 yv~GG~~~~------~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
|+|||--.. -...|+|.||+.+++|+++...| -|.+|.+|-|++..++|++|||+.+. +....|+||+|+|
T Consensus 136 ~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~--nr~y~YyNDvy~F 212 (521)
T KOG1230|consen 136 WLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDS--NRDYIYYNDVYAF 212 (521)
T ss_pred EEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecC--CCceEEeeeeEEE
Confidence 999996321 13589999999999999999765 89999999999999999999999765 5577899999999
Q ss_pred EcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCC--------CCcccCceEEEECCC-----CcEEEeeCCCC
Q 010011 172 NTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDG--------HDYYLSDVHILDTDT-----LTWKELNTSGM 237 (520)
Q Consensus 172 d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~--------~~~~~~~i~~yd~~t-----~~W~~~~~~~~ 237 (520)
|+++.+|.++.+.+..|.+|.+|++++. .+.|||+||+.. .+...+|+|.++++. ..|+.+.+.+.
T Consensus 213 dLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~ 292 (521)
T KOG1230|consen 213 DLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV 292 (521)
T ss_pred eccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC
Confidence 9999999999998889999999999888 999999999852 345789999999988 78999999999
Q ss_pred CCCCCceeEEEEECC-EEEEEecccCC--------CCccCcEEEEecCCCcEEEeeeC
Q 010011 238 VLSPRAGHSTVAFGK-NLFVFGGFTDS--------QNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 238 ~p~~R~~hs~~~~~~-~iyv~GG~~~~--------~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
.|.||.++++++..+ +.|.|||..+- +.++||+|.||++.++|......
T Consensus 293 kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 293 KPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred CCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhc
Confidence 999999999888765 89999998762 34789999999999999987543
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=8.5e-34 Score=294.46 Aligned_cols=281 Identities=21% Similarity=0.253 Sum_probs=213.7
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECC--CCeEEeeeccCCCC-CCCCcceEEEECCEEEEEcCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~~l~~~g~~P-~~R~~hs~~~~~~~iyv~GG~ 103 (520)
+.|.+|..++++++ +++|||+||... +.+++||+. +++|.+++ ++| .+|.+|+++.++++|||+||.
T Consensus 24 ~lP~~~~~~~~~~~--~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 24 DLPVPFKNGTGAID--NNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred CCCcCccCCeEEEE--CCEEEEEeCCCC-----CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCC
Confidence 46778887877777 668999999732 458999986 47899865 565 489999999999999999998
Q ss_pred CC------CCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCC------------------
Q 010011 104 DG------MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSN------------------ 158 (520)
Q Consensus 104 ~~------~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~------------------ 158 (520)
.. ...++++|+||+.+++|+.++. ..|.++.+|+++. .+++||++||......
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~ 171 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD 171 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence 64 1246899999999999999872 3577788888777 7999999999742100
Q ss_pred ----------CCCcceeceeEEEEcCcceEEEcccCCCCCC-CCcceeEEeeCCEEEEEecCCCCCcccCceE--EEECC
Q 010011 159 ----------TNDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVH--ILDTD 225 (520)
Q Consensus 159 ----------~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~-~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~--~yd~~ 225 (520)
.......+++++||+.+++|..+. ++|. +|..|+++.++++|||+||.........+++ .||++
T Consensus 172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~ 248 (376)
T PRK14131 172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN 248 (376)
T ss_pred hhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence 000013578999999999999987 5664 7888899999999999999754433445555 45778
Q ss_pred CCcEEEeeCCCCCCCCCc--------eeEEEEECCEEEEEecccCCCC----------------ccCcEEEEecCCCcEE
Q 010011 226 TLTWKELNTSGMVLSPRA--------GHSTVAFGKNLFVFGGFTDSQN----------------LYDDLYMIDVDSGLWT 281 (520)
Q Consensus 226 t~~W~~~~~~~~~p~~R~--------~hs~~~~~~~iyv~GG~~~~~~----------------~~~dv~~yd~~~~~W~ 281 (520)
+++|..+.. +|.+|. ++.++.++++|||+||...... ....+++||+++++|+
T Consensus 249 ~~~W~~~~~---~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 325 (376)
T PRK14131 249 NLKWQKLPD---LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQ 325 (376)
T ss_pred CcceeecCC---CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccc
Confidence 999999886 555543 3446778999999999753210 0124679999999999
Q ss_pred EeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccc
Q 010011 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 332 (520)
Q Consensus 282 ~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~ 332 (520)
.+..+ |.+|..++++. .++.|||+||.......++++++|....
T Consensus 326 ~~~~l---p~~r~~~~av~----~~~~iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 326 KVGEL---PQGLAYGVSVS----WNNGVLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred ccCcC---CCCccceEEEE----eCCEEEEEcCCCCCCcEeeeEEEEEEcC
Confidence 88654 66777765443 4899999999887777899999887553
No 17
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=5e-34 Score=303.40 Aligned_cols=257 Identities=36% Similarity=0.635 Sum_probs=233.0
Q ss_pred ccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCC--cEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCC
Q 010011 77 IKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLR--DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCG 154 (520)
Q Consensus 77 ~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~--~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~ 154 (520)
..+..|.+|+.|+++.+++++|||||........ ++|+||..+..|......+..|.+|++|+++.++++||+|||..
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 3567899999999999999999999987665554 49999999999999999999999999999999999999999975
Q ss_pred CCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeC
Q 010011 155 KSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (520)
Q Consensus 155 ~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~ 234 (520)
. ....+++++.||+.|.+|..+...+.+|.+|.+|+++.++++||||||.+.....++++|+||+++.+|.++..
T Consensus 133 ~-----~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 133 K-----KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred C-----CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceeccc
Confidence 3 23347899999999999999999999999999999999999999999998877789999999999999999999
Q ss_pred CCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcc
Q 010011 235 SGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 235 ~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (520)
.+..|.||.+|+++.++++++|+||......+++|+|+||+.+.+|..+...+..|.+|+.|+.++ .+..++++||
T Consensus 208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~----~~~~~~l~gG 283 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTV----SGDHLLLFGG 283 (482)
T ss_pred CCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEE----ECCEEEEEcC
Confidence 999999999999999999999999998777899999999999999999999999999999999774 3889999999
Q ss_pred cCCCCC-ccCceEeeeccccccccccchh
Q 010011 315 CNKSLE-ALDDMYYLYTGLVNERKLEKLS 342 (520)
Q Consensus 315 ~~~~~~-~~~dv~~l~~~~~~~~~~~~l~ 342 (520)
+..... .+.|+|.|++....|..++-..
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred Ccccccccccccccccccccceeeeeccc
Confidence 887544 7899999999988887665544
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=306.03 Aligned_cols=234 Identities=21% Similarity=0.351 Sum_probs=203.6
Q ss_pred ccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCc
Q 010011 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 32 R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 111 (520)
+..|+++++ +++||++||........+++++||+.+++|..++ ++|.+|.+|+++.++++||++||.++...+++
T Consensus 285 ~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~ 359 (534)
T PHA03098 285 VYCFGSVVL--NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNT 359 (534)
T ss_pred cccceEEEE--CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCEecce
Confidence 445677777 6689999999766556678999999999999854 78899999999999999999999987777899
Q ss_pred EEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCC
Q 010011 112 LHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (520)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r 191 (520)
+++||+.+++|+..+ ++|.+|.+|+++.++++||++||.... ...++++++||+.+++|+.+. ++|.+|
T Consensus 360 v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~---~~p~~r 428 (534)
T PHA03098 360 VESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKN-----DELLKTVECFSLNTNKWSKGS---PLPISH 428 (534)
T ss_pred EEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCC-----CcccceEEEEeCCCCeeeecC---CCCccc
Confidence 999999999999877 789999999999999999999996432 223689999999999999987 678999
Q ss_pred cceeEEeeCCEEEEEecCCCCCc--ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCc
Q 010011 192 DSHTCSSWKNKIIVIGGEDGHDY--YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (520)
Q Consensus 192 ~~h~~~~~~~~lyv~GG~~~~~~--~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~d 269 (520)
..|+++.++++||++||.+.... ..+.+++||+++++|+.++. ++.+|..++++.++++|||+||.... ...++
T Consensus 429 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~ 504 (534)
T PHA03098 429 YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS---LNFPRINASLCIFNNKIYVVGGDKYE-YYINE 504 (534)
T ss_pred cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC---CCcccccceEEEECCEEEEEcCCcCC-cccce
Confidence 99999999999999999864432 35679999999999999976 77889999999999999999998753 34688
Q ss_pred EEEEecCCCcEEEeee
Q 010011 270 LYMIDVDSGLWTKVIT 285 (520)
Q Consensus 270 v~~yd~~~~~W~~l~~ 285 (520)
+++||+++++|+.+..
T Consensus 505 v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 505 IEVYDDKTNTWTLFCK 520 (534)
T ss_pred eEEEeCCCCEEEecCC
Confidence 9999999999998865
No 19
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=297.82 Aligned_cols=267 Identities=15% Similarity=0.212 Sum_probs=218.4
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCC-CCCcEEEEECCCCeE
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMN-PLRDLHILDTSSHTW 122 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W 122 (520)
..+++.||... ....+..|+..+++|..+. ..| .+..|++++++++||++||.+... ..+++++||+.+++|
T Consensus 251 ~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (534)
T PHA03098 251 SIIYIHITMSI---FTYNYITNYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW 323 (534)
T ss_pred cceEeecccch---hhceeeecchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCee
Confidence 34666666541 2344667888889999864 333 245678999999999999997644 567999999999999
Q ss_pred EeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCE
Q 010011 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~ 202 (520)
..++ ++|.+|.+|+++.++++||++||.. .....+++++||+.+++|+.++ ++|.+|..|+++.++++
T Consensus 324 ~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~------~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~ 391 (534)
T PHA03098 324 NKVP---ELIYPRKNPGVTVFNNRIYVIGGIY------NSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNL 391 (534)
T ss_pred eECC---CCCcccccceEEEECCEEEEEeCCC------CCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCE
Confidence 8876 7889999999999999999999964 3345789999999999999987 78899999999999999
Q ss_pred EEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCC--ccCcEEEEecCCCcE
Q 010011 203 IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN--LYDDLYMIDVDSGLW 280 (520)
Q Consensus 203 lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~--~~~dv~~yd~~~~~W 280 (520)
||++||.......++++++||+.+++|+.+.. +|.+|.+|+++.++++|||+||...... .++++++||+++++|
T Consensus 392 iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 392 IYVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred EEEECCcCCCCcccceEEEEeCCCCeeeecCC---CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 99999976555567899999999999999876 8889999999999999999999864332 356799999999999
Q ss_pred EEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccccccccc
Q 010011 281 TKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (520)
Q Consensus 281 ~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (520)
+.+..+ |.+|..++++++ +++||++||.+.. ...++++.+|.....|..+..
T Consensus 469 ~~~~~~---~~~r~~~~~~~~----~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 469 TELSSL---NFPRINASLCIF----NNKIYVVGGDKYE-YYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred eeCCCC---CcccccceEEEE----CCEEEEEcCCcCC-cccceeEEEeCCCCEEEecCC
Confidence 998754 556776665433 8899999998765 346889999999888865543
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5.6e-31 Score=268.14 Aligned_cols=223 Identities=18% Similarity=0.278 Sum_probs=178.3
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEE-eeeccCCCCCCCCcceEEEECCEEEEEcCCCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWS-QPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG 105 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~ 105 (520)
+.|.+|..|+++++ +++||++||..... ..+++++||+.+++|. .....+++|.+|..|++++++++||++||...
T Consensus 58 ~lp~~r~~~~~~~~--~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~ 134 (323)
T TIGR03548 58 QLPYEAAYGASVSV--ENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN 134 (323)
T ss_pred cCCccccceEEEEE--CCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC
Confidence 56778888888887 56899999986543 5688999999999983 22224689999999999999999999999876
Q ss_pred CCCCCcEEEEECCCCeEEeecccCCCC-CCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccC
Q 010011 106 MNPLRDLHILDTSSHTWISPSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS 184 (520)
Q Consensus 106 ~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~ 184 (520)
...++++++||+.+++|+.++ ++| .+|..|+++.++++||||||... ....++++||+.+++|+.++..
T Consensus 135 ~~~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~-------~~~~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 135 GKPSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELYVFGGGSN-------IAYTDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred CccCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEEEEcCCCC-------ccccceEEEecCCCeeEECCCC
Confidence 667899999999999999887 565 47999999999999999999632 1235789999999999999754
Q ss_pred C--CCCCCCcceeE-EeeCCEEEEEecCCCCC-------------------------------cccCceEEEECCCCcEE
Q 010011 185 G--NPPSARDSHTC-SSWKNKIIVIGGEDGHD-------------------------------YYLSDVHILDTDTLTWK 230 (520)
Q Consensus 185 ~--~~p~~r~~h~~-~~~~~~lyv~GG~~~~~-------------------------------~~~~~i~~yd~~t~~W~ 230 (520)
. ..|..+..++. ++.+++|||+||.+... .+.+++++||+.+++|+
T Consensus 205 ~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 284 (323)
T TIGR03548 205 TTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWK 284 (323)
T ss_pred CCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeee
Confidence 2 23444444444 44579999999986421 12467999999999999
Q ss_pred EeeCCCCCC-CCCceeEEEEECCEEEEEecccCCCC
Q 010011 231 ELNTSGMVL-SPRAGHSTVAFGKNLFVFGGFTDSQN 265 (520)
Q Consensus 231 ~~~~~~~~p-~~R~~hs~~~~~~~iyv~GG~~~~~~ 265 (520)
.+.. +| .+|.+++++.++++||++||......
T Consensus 285 ~~~~---~p~~~r~~~~~~~~~~~iyv~GG~~~pg~ 317 (323)
T TIGR03548 285 SIGN---SPFFARCGAALLLTGNNIFSINGELKPGV 317 (323)
T ss_pred Eccc---ccccccCchheEEECCEEEEEeccccCCc
Confidence 9975 54 58999999999999999999865433
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.98 E-value=1.2e-31 Score=262.78 Aligned_cols=254 Identities=29% Similarity=0.523 Sum_probs=214.1
Q ss_pred CCCCCCCcceEEEE--CCEEEEEcCC--CCCC--CCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEEC-CEEEEEeC
Q 010011 80 SPPTPRDSHSCTTV--GENLYVFGGT--DGMN--PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGG 152 (520)
Q Consensus 80 ~~P~~R~~hs~~~~--~~~iyv~GG~--~~~~--~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG 152 (520)
++|.||.+.++++. .+.|++|||- ++.. ..+++|.||+.+++|+++... +.|.||..|.++++. +.+|||||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEecc
Confidence 68899999999887 4569999994 4443 469999999999999998743 689999999999986 89999999
Q ss_pred CCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCC---CcccCceEEEECCCCcE
Q 010011 153 CGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH---DYYLSDVHILDTDTLTW 229 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~---~~~~~~i~~yd~~t~~W 229 (520)
--.+.+.....-..|+|.||+.+.+|+++...+ .|.+|.+|-|+++.++|++|||+... -.|+||+|+||+++.+|
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceee
Confidence 654433333344689999999999999998765 79999999999999999999998533 35799999999999999
Q ss_pred EEeeCCCCCCCCCceeEEEEE-CCEEEEEecccC--------CCCccCcEEEEecCC-----CcEEEeeeCCCCCCCcee
Q 010011 230 KELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTD--------SQNLYDDLYMIDVDS-----GLWTKVITTGEGPSARFS 295 (520)
Q Consensus 230 ~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~--------~~~~~~dv~~yd~~~-----~~W~~l~~~~~~p~~r~~ 295 (520)
+++.+.+.-|.||++|++++. .+.|||.||+.. .+...+|+|.+++++ =.|.++.+.+..|.+|.+
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg 299 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG 299 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc
Confidence 999998888999999999988 899999999973 244679999999999 479999999999999988
Q ss_pred eeeeeeccccCCEEEEEcccCC--------CCCccCceEeeeccccccccc
Q 010011 296 VAGDCLDPLKGGVLVFIGGCNK--------SLEALDDMYYLYTGLVNERKL 338 (520)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~--------~~~~~~dv~~l~~~~~~~~~~ 338 (520)
.+.++ ..+++-++|||.-. ....+||+|.+++...+|.+.
T Consensus 300 fsv~v---a~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 300 FSVAV---AKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eeEEE---ecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 77433 35778899999643 135679999999999999776
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=99.98 E-value=1.2e-30 Score=278.65 Aligned_cols=207 Identities=15% Similarity=0.320 Sum_probs=182.6
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
++.||++||.+.. ...+.+++||+.+++|..++ ++|.+|..++++.++++||++||.++. +.+++||+.+++|
T Consensus 271 ~~~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNN-EIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCC-CcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC---CceEEEECCCCeE
Confidence 5689999998543 35678999999999999965 889999999999999999999998542 5699999999999
Q ss_pred EeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCE
Q 010011 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~ 202 (520)
..++ ++|.+|.+|+++.++++||++||.... .+.+++||+.+++|+.++ +++.+|..|++++++++
T Consensus 344 ~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~--------~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 344 VNMP---SLLKPRCNPAVASINNVIYVIGGHSET--------DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred EECC---CCCCCCcccEEEEECCEEEEecCcCCC--------CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 9887 899999999999999999999996311 256899999999999987 78899999999999999
Q ss_pred EEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEE
Q 010011 203 IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 203 lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (520)
||++||. +++||+++++|+.+++ ++.+|..++++.++++||++||.+.. ...+.+++||+++++|+.
T Consensus 410 IYv~GG~---------~e~ydp~~~~W~~~~~---m~~~r~~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 410 LFLVGRN---------AEFYCESSNTWTLIDD---PIYPRDNPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEEECCc---------eEEecCCCCcEeEcCC---CCCCccccEEEEECCEEEEECCcCCC-cccceEEEEECCCCeEEe
Confidence 9999983 5789999999999987 88899999999999999999998643 346789999999999986
Q ss_pred e
Q 010011 283 V 283 (520)
Q Consensus 283 l 283 (520)
.
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 4
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.98 E-value=2.6e-30 Score=265.79 Aligned_cols=230 Identities=20% Similarity=0.310 Sum_probs=180.0
Q ss_pred CCC-CCccceEEEEEcCCCEEEEEcCcCCCC-----CCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEE-EECCEEEE
Q 010011 27 SGP-GKRWGHTCNAIKGGRFLYVFGGYGKDN-----CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCT-TVGENLYV 99 (520)
Q Consensus 27 ~~P-~~R~ghs~~~v~~g~~Iyi~GG~~~~~-----~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~iyv 99 (520)
++| .+|..|+++++ +++||++||..... ..++++|+||+.+++|++++ ..+|.+|.+|+++ .++++||+
T Consensus 48 ~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~--~~~p~~~~~~~~~~~~~g~IYv 123 (346)
T TIGR03547 48 DFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLLGASGFSLHNGQAYF 123 (346)
T ss_pred CCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC--CCCCCcccceeEEEEeCCEEEE
Confidence 345 47889988888 66899999985432 14678999999999999975 2467778888777 68999999
Q ss_pred EcCCCCCC----------------------------------CCCcEEEEECCCCeEEeecccCCCCC-CCCCceEEEEC
Q 010011 100 FGGTDGMN----------------------------------PLRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVG 144 (520)
Q Consensus 100 ~GG~~~~~----------------------------------~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~hs~~~~~ 144 (520)
+||.+... .++++++||+.+++|+.++ ++|. +|.+++++.++
T Consensus 124 iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~ 200 (346)
T TIGR03547 124 TGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKG 200 (346)
T ss_pred EcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEEC
Confidence 99986421 1478999999999999986 6775 68999999999
Q ss_pred CEEEEEeCCCCCCCCCCcceeceeEEEE--cCcceEEEcccCCCCCCCC-------cceeEEeeCCEEEEEecCCCCC--
Q 010011 145 KRLFIFGGCGKSSNTNDEVYYNDLYILN--TETFVWKRATTSGNPPSAR-------DSHTCSSWKNKIIVIGGEDGHD-- 213 (520)
Q Consensus 145 ~~lyv~GG~~~~~~~~~~~~~~~v~~~d--~~t~~W~~v~~~~~~p~~r-------~~h~~~~~~~~lyv~GG~~~~~-- 213 (520)
++|||+||..... ....+++.|+ +.+++|..++ ++|.+| ..|++++++++|||+||.+...
T Consensus 201 ~~iyv~GG~~~~~-----~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~ 272 (346)
T TIGR03547 201 NKLLLINGEIKPG-----LRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQ 272 (346)
T ss_pred CEEEEEeeeeCCC-----ccchheEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCch
Confidence 9999999964221 1234555555 5677999998 444443 4566778899999999975321
Q ss_pred --------------cccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEe
Q 010011 214 --------------YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMID 274 (520)
Q Consensus 214 --------------~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd 274 (520)
..+..+++||+++++|+.+.. +|.+|..++++.++++|||+||.+..+..+++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 273 ENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK---LPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred hhhhcCCccccCCCCceeEeeEEEecCCcccccCC---CCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 012468899999999999986 8889999999999999999999987777788888764
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=3.2e-30 Score=267.74 Aligned_cols=235 Identities=19% Similarity=0.316 Sum_probs=183.7
Q ss_pred CCccceEEEEEcCCCEEEEEcCcCCC-----CCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCC
Q 010011 30 GKRWGHTCNAIKGGRFLYVFGGYGKD-----NCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGT 103 (520)
Q Consensus 30 ~~R~ghs~~~v~~g~~Iyi~GG~~~~-----~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~ 103 (520)
.+|.+|+++++ +++||++||.... ...++++|+||+.+++|++++. ..|.+|.+|++++ .+++||++||.
T Consensus 73 ~~r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 73 GPREQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGV 148 (376)
T ss_pred CCcccceEEEE--CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCC
Confidence 47999988888 6689999998641 1235789999999999999762 3577788888877 79999999997
Q ss_pred CCC----------------------------------CCCCcEEEEECCCCeEEeecccCCCCC-CCCCceEEEECCEEE
Q 010011 104 DGM----------------------------------NPLRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVGKRLF 148 (520)
Q Consensus 104 ~~~----------------------------------~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~hs~~~~~~~ly 148 (520)
+.. ...+++++||+.+++|+.+. ++|. +|.+|+++.++++||
T Consensus 149 ~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iY 225 (376)
T PRK14131 149 NKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLW 225 (376)
T ss_pred CHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEE
Confidence 532 12478999999999999876 6775 788999999999999
Q ss_pred EEeCCCCCCCCCCcceeceeE--EEEcCcceEEEcccCCCCCCCCc--------ceeEEeeCCEEEEEecCCCCCc----
Q 010011 149 IFGGCGKSSNTNDEVYYNDLY--ILNTETFVWKRATTSGNPPSARD--------SHTCSSWKNKIIVIGGEDGHDY---- 214 (520)
Q Consensus 149 v~GG~~~~~~~~~~~~~~~v~--~~d~~t~~W~~v~~~~~~p~~r~--------~h~~~~~~~~lyv~GG~~~~~~---- 214 (520)
|+||..... ....+++ .||+++++|..+. ++|.+|. .+.+++++++|||+||.+....
T Consensus 226 v~GG~~~~~-----~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~ 297 (376)
T PRK14131 226 LINGEIKPG-----LRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENY 297 (376)
T ss_pred EEeeeECCC-----cCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhh
Confidence 999963221 1234444 5577899999998 4555543 2335678999999999763210
Q ss_pred ------------ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEE
Q 010011 215 ------------YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 215 ------------~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (520)
....+++||+++++|+.+.. +|.+|..++++.++++|||+||........+++++|+++++.|+.
T Consensus 298 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 298 QNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred hcCCcccccCCcceeehheEEecCCcccccCc---CCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 01246789999999998876 899999999999999999999987666678999999999887764
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=4.1e-28 Score=259.20 Aligned_cols=211 Identities=19% Similarity=0.235 Sum_probs=181.8
Q ss_pred EEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeE
Q 010011 90 CTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (520)
Q Consensus 90 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~ 169 (520)
++..++.||++||.++....+.+++||+.+++|..++ +++.+|..++++.++++||++||... .+.++
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~---------~~sve 334 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN---------PTSVE 334 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC---------CCceE
Confidence 3458999999999987777889999999999999988 78999999999999999999999631 15689
Q ss_pred EEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE
Q 010011 170 ILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (520)
Q Consensus 170 ~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~ 249 (520)
+||+.+++|..++ ++|.+|..|++++++++||++||.+.. .+.+++|||.+++|+.+++ ++.+|.+|+++.
T Consensus 335 ~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~r~~~~~~~ 405 (480)
T PHA02790 335 RWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYPHYKSCALV 405 (480)
T ss_pred EEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCccccceEEE
Confidence 9999999999998 789999999999999999999998643 3678999999999999887 889999999999
Q ss_pred ECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeee
Q 010011 250 FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 329 (520)
Q Consensus 250 ~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~ 329 (520)
++++|||+||. +.+||+++++|+.+.++ |.+|..+.++++ +++||++||.+.. ..++.+..+|
T Consensus 406 ~~~~IYv~GG~---------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~----~~~IYviGG~~~~-~~~~~ve~Yd 468 (480)
T PHA02790 406 FGRRLFLVGRN---------AEFYCESSNTWTLIDDP---IYPRDNPELIIV----DNKLLLIGGFYRG-SYIDTIEVYN 468 (480)
T ss_pred ECCEEEEECCc---------eEEecCCCCcEeEcCCC---CCCccccEEEEE----CCEEEEECCcCCC-cccceEEEEE
Confidence 99999999984 57899999999998765 567777665543 8899999998744 3457899999
Q ss_pred ccccccccc
Q 010011 330 TGLVNERKL 338 (520)
Q Consensus 330 ~~~~~~~~~ 338 (520)
.....|..+
T Consensus 469 ~~~~~W~~~ 477 (480)
T PHA02790 469 NRTYSWNIW 477 (480)
T ss_pred CCCCeEEec
Confidence 988888543
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.3e-28 Score=246.25 Aligned_cols=258 Identities=28% Similarity=0.542 Sum_probs=217.8
Q ss_pred CCeEEeee-ccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEE
Q 010011 69 NQTWSQPV-IKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRL 147 (520)
Q Consensus 69 t~~W~~l~-~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~l 147 (520)
--.|+++. .+|+.|.+|.+|-++++..-|.||||-+ .+..+++++||..+++|....+.|+.|.+...|..+..+.+|
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtri 94 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRI 94 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceE
Confidence 34798875 3788999999999999999999999954 345689999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc----cCCCCCCCCcceeEEeeCCEEEEEecCCCC--------Ccc
Q 010011 148 FIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT----TSGNPPSARDSHTCSSWKNKIIVIGGEDGH--------DYY 215 (520)
Q Consensus 148 yv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~----~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~--------~~~ 215 (520)
|+|||.. .-..|.||+|.+-..-..|+++. .+|.+|.+|-+|+.+.++++.|+|||..++ -.+
T Consensus 95 lvFGGMv-----EYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 95 LVFGGMV-----EYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred EEEccEe-----eeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchh
Confidence 9999974 34568899988887788898875 467899999999999999999999997432 247
Q ss_pred cCceEEEECCC----CcEEEeeCCCCCCCCCceeEEEEE------CCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 216 LSDVHILDTDT----LTWKELNTSGMVLSPRAGHSTVAF------GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 216 ~~~i~~yd~~t----~~W~~~~~~~~~p~~R~~hs~~~~------~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
++|+|++++.- -.|......|..|.+|..|+++++ ..+|||+||..+ -.+.|+|.+|+++.+|.+...
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSL 247 (830)
T ss_pred hcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecceeecccccc
Confidence 99999998863 349998888999999999999987 246999999975 358999999999999999999
Q ss_pred CCCCCCCceeeeeeeeccccCCEEEEEcccCC-------------CCCccCceEeeeccccccccc
Q 010011 286 TGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK-------------SLEALDDMYYLYTGLVNERKL 338 (520)
Q Consensus 286 ~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~-------------~~~~~~dv~~l~~~~~~~~~~ 338 (520)
.+..|.+|+.|++..+ ++++|||||.-. +....+.+-++++++..|..+
T Consensus 248 ~G~~PlPRSLHsa~~I----GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 248 SGVAPLPRSLHSATTI----GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred cCCCCCCcccccceee----cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 9999999999998764 899999999632 123444555777777777665
No 27
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.79 E-value=2.4e-20 Score=187.04 Aligned_cols=299 Identities=21% Similarity=0.320 Sum_probs=214.0
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECC--EEEEEcCCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE--NLYVFGGTD 104 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~--~iyv~GG~~ 104 (520)
..|..|.||.++.....++||++|||+.-. .+.++|.|+...+.|..+...+..|-.|.+|-++.... ++|+.|-+-
T Consensus 256 ~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~ 334 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYL 334 (723)
T ss_pred cCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcc
Confidence 368899999999998889999999997654 67899999999999999987778999999999999876 899999764
Q ss_pred CC------CCCCcEEEEECCCCeEEeecccCC---CCCCCCCceEEEECCE--EEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 105 GM------NPLRDLHILDTSSHTWISPSVRGE---GPEAREGHSAALVGKR--LFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 105 ~~------~~~~~~~~yd~~t~~W~~~~~~g~---~p~~r~~hs~~~~~~~--lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
+. ....|+|+||..++.|..+..... .|...+.|.|++++++ +|||||+.- ..++.....+|.||.
T Consensus 335 ~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~---~~~e~~f~GLYaf~~ 411 (723)
T KOG2437|consen 335 DSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL---TCNEPQFSGLYAFNC 411 (723)
T ss_pred ccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec---cCCCccccceEEEec
Confidence 32 235799999999999997765332 6888999999999988 999999742 223345688999999
Q ss_pred CcceEEEcccC-------CCCCCCCcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeC-----CCCCC
Q 010011 174 ETFVWKRATTS-------GNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT-----SGMVL 239 (520)
Q Consensus 174 ~t~~W~~v~~~-------~~~p~~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~-----~~~~p 239 (520)
....|+.+... ..-...|.+|+|-.+ ++++|++||..... -++-.+.||+....-..+.. ....|
T Consensus 412 ~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-El~L~f~y~I~~E~~~~~s~~~k~dsS~~p 490 (723)
T KOG2437|consen 412 QCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-ELNLFFSYDIDSEHVDIISDGTKKDSSMVP 490 (723)
T ss_pred CCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-EEeehhcceeccccchhhhccCcCccccCC
Confidence 99999977421 122456777877655 67899999986553 34555667665444333321 11111
Q ss_pred CCCceeEEEE---ECCEEEEEecccCC-----CCccCcEEEEecCCCcEEEeeeC---------------------CCCC
Q 010011 240 SPRAGHSTVA---FGKNLFVFGGFTDS-----QNLYDDLYMIDVDSGLWTKVITT---------------------GEGP 290 (520)
Q Consensus 240 ~~R~~hs~~~---~~~~iyv~GG~~~~-----~~~~~dv~~yd~~~~~W~~l~~~---------------------~~~p 290 (520)
.+ ....-+. -...|.+.-|.+.. ....+.+|+|++.++.|..+... ...+
T Consensus 491 S~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~ 569 (723)
T KOG2437|consen 491 ST-GFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEP 569 (723)
T ss_pred Cc-chhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceec
Confidence 11 1111112 23557777776532 23578899999999999876211 1246
Q ss_pred CCceeeeeeeeccccCCEEEEEcccCCC----CCccCceEeeecccc
Q 010011 291 SARFSVAGDCLDPLKGGVLVFIGGCNKS----LEALDDMYYLYTGLV 333 (520)
Q Consensus 291 ~~r~~~~~~~~~~~~~~~l~v~GG~~~~----~~~~~dv~~l~~~~~ 333 (520)
.+|+.|+-+ .......+|++||.... ...++|.|.+++-.+
T Consensus 570 ~~rf~h~~~--~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~rp 614 (723)
T KOG2437|consen 570 CPRFAHQLV--YDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKICRP 614 (723)
T ss_pred cccchhHHH--HHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhccc
Confidence 778777633 23456678999997644 246778888877633
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=3.3e-17 Score=159.83 Aligned_cols=282 Identities=22% Similarity=0.304 Sum_probs=203.6
Q ss_pred CCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCC--CeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCC
Q 010011 28 GPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG 105 (520)
Q Consensus 28 ~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~ 105 (520)
.|.+--.-+...+ ++.+||-=|... ...|..|+.. ..|.++.. .+-.+|....+++++++||+|||...
T Consensus 33 lPvg~KnG~Ga~i--g~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 33 LPVGFKNGAGALI--GDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred CCcccccccccee--cceEEEEeccCC-----ccceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeecccc
Confidence 3444333355566 557888656322 3478888764 58999762 34457999999999999999999854
Q ss_pred CC-----CCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCC-------------------
Q 010011 106 MN-----PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTN------------------- 160 (520)
Q Consensus 106 ~~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~------------------- 160 (520)
.. .++++|+||+.+++|+++.+. .|....+++++..++ +||++||+.+...+.
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 33 369999999999999999863 566688999999987 899999986432111
Q ss_pred ---------CcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECC--CCcE
Q 010011 161 ---------DEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTD--TLTW 229 (520)
Q Consensus 161 ---------~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W 229 (520)
+..+..++..|++.+++|+.+.. .+-.++++++.+.-+|++.++-|+--..-+...++.++.. ..+|
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceee
Confidence 23445678999999999998864 3456677777776788899999987666566777777764 6789
Q ss_pred EEeeCCC----CCCCCCceeEEEEECCEEEEEecccCC------------------CCccCcEEEEecCCCcEEEeeeCC
Q 010011 230 KELNTSG----MVLSPRAGHSTVAFGKNLFVFGGFTDS------------------QNLYDDLYMIDVDSGLWTKVITTG 287 (520)
Q Consensus 230 ~~~~~~~----~~p~~R~~hs~~~~~~~iyv~GG~~~~------------------~~~~~dv~~yd~~~~~W~~l~~~~ 287 (520)
..+...+ .......++-.-..++.++|.||..-. ..+.++||.|| .+.|+.+..+
T Consensus 260 ~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL- 336 (381)
T COG3055 260 LKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL- 336 (381)
T ss_pred eeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc-
Confidence 9986521 111333444455667889999996521 13568899999 8999998765
Q ss_pred CCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecc
Q 010011 288 EGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (520)
Q Consensus 288 ~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (520)
|.+...-++. ..++.||++||.+....++.+++.+...
T Consensus 337 --p~~l~YG~s~----~~nn~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 337 --PQGLAYGVSL----SYNNKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred --CCCccceEEE----ecCCcEEEEccccCCCeeeeeEEEEEEc
Confidence 4444332322 3588999999999999999999887643
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.69 E-value=2.5e-15 Score=146.75 Aligned_cols=232 Identities=20% Similarity=0.338 Sum_probs=169.8
Q ss_pred CccceEEEEEcCCCEEEEEcCcCCCCC----CcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECC-EEEEEcCCCC
Q 010011 31 KRWGHTCNAIKGGRFLYVFGGYGKDNC----QTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDG 105 (520)
Q Consensus 31 ~R~ghs~~~v~~g~~Iyi~GG~~~~~~----~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~iyv~GG~~~ 105 (520)
+|-+..++++ +++||+|||.+.... ..+++|+||+.+++|.++.+ ..|....+++++.+++ +||++||.+.
T Consensus 82 ~rnqa~~a~~--~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 82 ARNQAVAAVI--GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred ccccchheee--CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccH
Confidence 5777777777 668999999966543 46899999999999999875 5677789999999988 8999999742
Q ss_pred CC----------------------------------CCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEe
Q 010011 106 MN----------------------------------PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFG 151 (520)
Q Consensus 106 ~~----------------------------------~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~G 151 (520)
.. ...+++.|++.++.|+.+-. .+-.++++.+.+.-++++.++-
T Consensus 158 ~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lIn 235 (381)
T COG3055 158 NIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLIN 235 (381)
T ss_pred HhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEc
Confidence 11 14678999999999986542 3445677766666678899999
Q ss_pred CCCCCCCCCCcceeceeEEEEc--CcceEEEcccCCCCC----CCCcceeEEeeCCEEEEEecCCC--------------
Q 010011 152 GCGKSSNTNDEVYYNDLYILNT--ETFVWKRATTSGNPP----SARDSHTCSSWKNKIIVIGGEDG-------------- 211 (520)
Q Consensus 152 G~~~~~~~~~~~~~~~v~~~d~--~t~~W~~v~~~~~~p----~~r~~h~~~~~~~~lyv~GG~~~-------------- 211 (520)
|.-+.+. .+..+++++. ...+|.++.....+. ....++-.-..++.++|.||.+-
T Consensus 236 GEiKpGL-----Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~A 310 (381)
T COG3055 236 GEIKPGL-----RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYA 310 (381)
T ss_pred ceecCCc-----cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccccc
Confidence 9755443 3444555555 467899996431111 11122222234788899998641
Q ss_pred ----CCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 212 ----HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 212 ----~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
...+.++||.+| ++.|+.+.. +|.++.+..++..+++||++||-+..+....+++.+-...+
T Consensus 311 H~Gl~K~w~~~Vy~~d--~g~Wk~~Ge---Lp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~gk 376 (381)
T COG3055 311 HEGLSKSWNSEVYIFD--NGSWKIVGE---LPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWDGK 376 (381)
T ss_pred ccchhhhhhceEEEEc--CCceeeecc---cCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEcCc
Confidence 123567899999 889998876 89999999999999999999999988877777776654443
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.63 E-value=3.7e-16 Score=157.23 Aligned_cols=272 Identities=21% Similarity=0.315 Sum_probs=197.2
Q ss_pred CCeEEeeeccC-------CCCCCCCcceEEEECC--EEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCce
Q 010011 69 NQTWSQPVIKG-------SPPTPRDSHSCTTVGE--NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (520)
Q Consensus 69 t~~W~~l~~~g-------~~P~~R~~hs~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (520)
+..|.++..+. .-|..|.+|.++...+ .||++||+++...+.|.|.|+...+.|......+..|..|..|-
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 45788765433 4588899999998855 89999999999999999999999999999888778999999999
Q ss_pred EEEECC--EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCC---CCCCCCcceeEEeeCCE--EEEEecCCCC
Q 010011 140 AALVGK--RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG---NPPSARDSHTCSSWKNK--IIVIGGEDGH 212 (520)
Q Consensus 140 ~~~~~~--~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~---~~p~~r~~h~~~~~~~~--lyv~GG~~~~ 212 (520)
|++.-. +||+.|-+-..+..+......|+|+||.+++.|.-++... ..|...+.|.|++.+++ +|||||+.-.
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence 999865 8999999977666666667789999999999999986432 35788899999999877 9999998543
Q ss_pred --CcccCceEEEECCCCcEEEeeCCC-------CCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 213 --DYYLSDVHILDTDTLTWKELNTSG-------MVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 213 --~~~~~~i~~yd~~t~~W~~~~~~~-------~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
......++.||+....|..+...- +....|.+|++-.. +..+|++||.....+ ++=...||+....=.
T Consensus 398 ~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E-l~L~f~y~I~~E~~~ 476 (723)
T KOG2437|consen 398 CNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE-LNLFFSYDIDSEHVD 476 (723)
T ss_pred CCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE-Eeehhcceeccccch
Confidence 235677999999999999875421 11235778875544 567999999865432 334456666544332
Q ss_pred Eee-----eCCCCCCCceeeeeeeeccccCCEEEEEcccCCC-----CCccCceEeeeccccccccccchhh
Q 010011 282 KVI-----TTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS-----LEALDDMYYLYTGLVNERKLEKLSL 343 (520)
Q Consensus 282 ~l~-----~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~-----~~~~~dv~~l~~~~~~~~~~~~l~~ 343 (520)
.+. +....|.+.+..- .+.+.....|.+.-|.... ....+..|.++.....|..+.+++.
T Consensus 477 ~~s~~~k~dsS~~pS~~f~qR--s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~ 546 (723)
T KOG2437|consen 477 IISDGTKKDSSMVPSTGFTQR--ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQ 546 (723)
T ss_pred hhhccCcCccccCCCcchhhh--cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHH
Confidence 221 1112233322222 2233456667776665432 3456889999999888866655444
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.09 E-value=2.7e-10 Score=82.48 Aligned_cols=49 Identities=37% Similarity=0.622 Sum_probs=45.6
Q ss_pred CCCcceEEEECCEEEEEcCCCC-CCCCCcEEEEECCCCeEEeecccCCCCCCC
Q 010011 84 PRDSHSCTTVGENLYVFGGTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAR 135 (520)
Q Consensus 84 ~R~~hs~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 135 (520)
||.+|++++++++|||+||.+. ...++++++||+.+++|++++ ++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 6899999999999999999988 678999999999999999987 788886
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.00 E-value=9.4e-10 Score=79.58 Aligned_cols=50 Identities=40% Similarity=0.790 Sum_probs=44.1
Q ss_pred CccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCC
Q 010011 31 KRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPR 85 (520)
Q Consensus 31 ~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R 85 (520)
||.+|+++++ +++|||+||........+++++||+.+++|++++ +||.||
T Consensus 1 pR~~~s~v~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV--GGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEE--CCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 6899999998 6699999999775557899999999999999975 888887
No 33
>PLN02772 guanylate kinase
Probab=98.97 E-value=3.8e-09 Score=107.63 Aligned_cols=89 Identities=27% Similarity=0.535 Sum_probs=77.0
Q ss_pred CCCCCCCcceEEEECCEEEEEcCCCCCC-CCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCC
Q 010011 80 SPPTPRDSHSCTTVGENLYVFGGTDGMN-PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSS 157 (520)
Q Consensus 80 ~~P~~R~~hs~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~ 157 (520)
--+.++.+|+++.+++++|||||.++.. ..+.+++||..|++|..+.+.|..|.+|.+|+++.+ +++|+|+++....
T Consensus 20 ~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~- 98 (398)
T PLN02772 20 FGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP- 98 (398)
T ss_pred ccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-
Confidence 4456899999999999999999998765 779999999999999999999999999999999999 5799999885322
Q ss_pred CCCCcceeceeEEEEcCcc
Q 010011 158 NTNDEVYYNDLYILNTETF 176 (520)
Q Consensus 158 ~~~~~~~~~~v~~~d~~t~ 176 (520)
..++|.+.+.|.
T Consensus 99 -------~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -------DDSIWFLEVDTP 110 (398)
T ss_pred -------ccceEEEEcCCH
Confidence 367888887764
No 34
>PLN02772 guanylate kinase
Probab=98.94 E-value=5.4e-09 Score=106.52 Aligned_cols=92 Identities=21% Similarity=0.394 Sum_probs=78.2
Q ss_pred cCCCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCC
Q 010011 25 SSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGT 103 (520)
Q Consensus 25 ~g~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~ 103 (520)
.|-.+.+|.+|+++++ ++++|+|||.+......+.+|+||..+++|..+.+.|..|.||.+|+++.+ +++|+|+++.
T Consensus 18 ~~~~~~~~~~~tav~i--gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 18 NGFGVKPKNRETSVTI--GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred cCccCCCCCcceeEEE--CCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 4446779999999999 779999999866543578999999999999999999999999999999999 5789999875
Q ss_pred CCCCCCCcEEEEECCCC
Q 010011 104 DGMNPLRDLHILDTSSH 120 (520)
Q Consensus 104 ~~~~~~~~~~~yd~~t~ 120 (520)
.+. -+++|.+...|.
T Consensus 96 ~~~--~~~~w~l~~~t~ 110 (398)
T PLN02772 96 SAP--DDSIWFLEVDTP 110 (398)
T ss_pred CCC--ccceEEEEcCCH
Confidence 433 378899887763
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.88 E-value=4.1e-09 Score=75.86 Aligned_cols=47 Identities=43% Similarity=0.875 Sum_probs=42.3
Q ss_pred CCEEEEEcCCC--CCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE
Q 010011 94 GENLYVFGGTD--GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV 143 (520)
Q Consensus 94 ~~~iyv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~ 143 (520)
+++||||||.+ +...++++|+||+.+++|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 567889999999999999988 489999999999874
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.84 E-value=7.9e-09 Score=74.37 Aligned_cols=48 Identities=44% Similarity=0.857 Sum_probs=41.9
Q ss_pred CCEEEEEcCcC-CCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE
Q 010011 43 GRFLYVFGGYG-KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV 93 (520)
Q Consensus 43 g~~Iyi~GG~~-~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~ 93 (520)
|++||||||++ ......+++|+||+.+++|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 46899999998 3455789999999999999997 689999999999874
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.73 E-value=2.4e-08 Score=71.81 Aligned_cols=46 Identities=30% Similarity=0.771 Sum_probs=41.1
Q ss_pred CCceeEEEEECCEEEEEecc--cCCCCccCcEEEEecCCCcEEEeeeC
Q 010011 241 PRAGHSTVAFGKNLFVFGGF--TDSQNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 241 ~R~~hs~~~~~~~iyv~GG~--~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
||.+|+++.++++|||+||+ .......+++++||+++.+|+.+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 44456789999999999999998765
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.72 E-value=1.5e-08 Score=72.91 Aligned_cols=46 Identities=35% Similarity=0.801 Sum_probs=31.7
Q ss_pred CCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeC
Q 010011 241 PRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 241 ~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
||++|+++.+ +++||||||.......++++|+||+++++|+++.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 6999999998 589999999988777899999999999999999443
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.71 E-value=3.1e-08 Score=70.49 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=42.4
Q ss_pred CCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeC
Q 010011 241 PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 241 ~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
||.+|+++.++++|||+||........+++++||+++++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6899999999999999999998778899999999999999999875
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.71 E-value=3.7e-08 Score=70.84 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=39.6
Q ss_pred CCCcceEEEECCEEEEEcCC---CCCCCCCcEEEEECCCCeEEeecc
Q 010011 84 PRDSHSCTTVGENLYVFGGT---DGMNPLRDLHILDTSSHTWISPSV 127 (520)
Q Consensus 84 ~R~~hs~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~t~~W~~~~~ 127 (520)
||.+|++++++++||||||. +.....+++++||+.+++|+.++.
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 445678999999999999998873
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.69 E-value=1.3e-08 Score=72.43 Aligned_cols=43 Identities=35% Similarity=0.783 Sum_probs=39.8
Q ss_pred CCCcceEEEECCEEEEEcCCCC-CCCCCcEEEEECCCCeEEeec
Q 010011 84 PRDSHSCTTVGENLYVFGGTDG-MNPLRDLHILDTSSHTWISPS 126 (520)
Q Consensus 84 ~R~~hs~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~ 126 (520)
||.+|++++++++||++||.++ ...++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 6899999999999999999988 678899999999999999887
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.69 E-value=1.8e-08 Score=72.50 Aligned_cols=48 Identities=33% Similarity=0.670 Sum_probs=31.0
Q ss_pred CccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCC
Q 010011 31 KRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPP 82 (520)
Q Consensus 31 ~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P 82 (520)
||.+|+++.+.+ ++||||||.+......+++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~-~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGD-NSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-T-TEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeC-CeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 699999999854 479999999877668899999999999999973 555
No 43
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.69 E-value=3.2e-06 Score=80.99 Aligned_cols=178 Identities=19% Similarity=0.252 Sum_probs=111.6
Q ss_pred CCCCCCCceEEEEC---C---EEEEEeCCCCCCCCCCcceeceeEEEEcCcc--------eEEEcccCCCCCCCCcceeE
Q 010011 131 GPEAREGHSAALVG---K---RLFIFGGCGKSSNTNDEVYYNDLYILNTETF--------VWKRATTSGNPPSARDSHTC 196 (520)
Q Consensus 131 ~p~~r~~hs~~~~~---~---~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--------~W~~v~~~~~~p~~r~~h~~ 196 (520)
+|..|+-..+...+ + ..+|-||. ..+......+|++...+. ..++-...|+.|.+|++|++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGr-----TPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~ 93 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGR-----TPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTI 93 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCc-----CCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceE
Confidence 56666655444422 1 35566886 445556778888876543 23444556899999999999
Q ss_pred Eee----CCEEEEEecCCCC-------------CcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEec
Q 010011 197 SSW----KNKIIVIGGEDGH-------------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGG 259 (520)
Q Consensus 197 ~~~----~~~lyv~GG~~~~-------------~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG 259 (520)
.++ +...++|||...- -.+.-.++.+|++-+..+.-.. +++......|.+..-+|.+|++||
T Consensus 94 ~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGG 172 (337)
T PF03089_consen 94 NVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGG 172 (337)
T ss_pred EEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEcc
Confidence 877 2347889997421 0124458888888877776543 225567888999999999999999
Q ss_pred ccCC-CCccCcEEEEecCCCc---EEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 260 FTDS-QNLYDDLYMIDVDSGL---WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 260 ~~~~-~~~~~dv~~yd~~~~~---W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
..-. +.....++++.++--. +...... + ...+.++++++.......+|+||+...
T Consensus 173 Hsl~sd~Rpp~l~rlkVdLllGSP~vsC~vl---~-~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 173 HSLESDSRPPRLYRLKVDLLLGSPAVSCTVL---Q-GGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEccCCCCCCcEEEEEEeecCCCceeEEEEC---C-CCceEeeeeEeecCCCceEEEeccccc
Confidence 8632 2234556666544221 1111111 1 223344445555666889999998765
No 44
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.61 E-value=6.8e-06 Score=78.78 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCC-CCCcEEEEECCCCe--------EEeecccCCCCCCCCCceEEEEC----CEEEEEeCCCCCC-----
Q 010011 96 NLYVFGGTDGMN-PLRDLHILDTSSHT--------WISPSVRGEGPEAREGHSAALVG----KRLFIFGGCGKSS----- 157 (520)
Q Consensus 96 ~iyv~GG~~~~~-~~~~~~~yd~~t~~--------W~~~~~~g~~p~~r~~hs~~~~~----~~lyv~GG~~~~~----- 157 (520)
..+|.||++.++ -.+.+|++...+.. .+.....|++|.+||+|++.++. ...++|||+....
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 367789988765 45788888765432 44556678999999999998873 2488999974321
Q ss_pred ---CCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCC-CcccCceEEEECCCC---cEE
Q 010011 158 ---NTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTL---TWK 230 (520)
Q Consensus 158 ---~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~-~~~~~~i~~yd~~t~---~W~ 230 (520)
.+.--.+...++.+|++-.....-. ...+-....+|.+...++.+|++||..-. +.....++++..+-- -+.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 1111233456788888776655432 12455677888888889999999997533 234445666543211 111
Q ss_pred EeeCCCCCCCCCceeEEEEE---CCEEEEEecccCC
Q 010011 231 ELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDS 263 (520)
Q Consensus 231 ~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~ 263 (520)
.... +.....-.++++. .+..+|+||+..+
T Consensus 199 sC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 199 SCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 1111 2333444444433 3678999999754
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.55 E-value=1.4e-07 Score=65.36 Aligned_cols=40 Identities=45% Similarity=0.768 Sum_probs=35.8
Q ss_pred CCCCCCcceEEEECCEEEEEcCCCC--CCCCCcEEEEECCCC
Q 010011 81 PPTPRDSHSCTTVGENLYVFGGTDG--MNPLRDLHILDTSSH 120 (520)
Q Consensus 81 ~P~~R~~hs~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~t~ 120 (520)
+|.+|.+|+++.++++|||+||.+. ...++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 668899999998763
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.49 E-value=2.7e-07 Score=63.97 Aligned_cols=40 Identities=43% Similarity=0.940 Sum_probs=36.3
Q ss_pred CCCCCceeEEEEECCEEEEEecccC-CCCccCcEEEEecCC
Q 010011 238 VLSPRAGHSTVAFGKNLFVFGGFTD-SQNLYDDLYMIDVDS 277 (520)
Q Consensus 238 ~p~~R~~hs~~~~~~~iyv~GG~~~-~~~~~~dv~~yd~~~ 277 (520)
.|.+|.+|+++.++++|||+||... ....++|+|+||+++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 677899999999876
No 47
>smart00612 Kelch Kelch domain.
Probab=98.46 E-value=2.7e-07 Score=65.16 Aligned_cols=47 Identities=30% Similarity=0.674 Sum_probs=41.8
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC
Q 010011 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK 145 (520)
Q Consensus 96 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~ 145 (520)
+||++||.++...++++++||+.+++|+.++ ++|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999987677899999999999999877 8999999999988764
No 48
>smart00612 Kelch Kelch domain.
Probab=98.26 E-value=1.4e-06 Score=61.42 Aligned_cols=47 Identities=30% Similarity=0.622 Sum_probs=39.9
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECC
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE 95 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 95 (520)
+||++||.... ...+++++||+.+++|+.++ ++|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 38999998653 36788999999999999955 8999999999988764
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.18 E-value=0.0001 Score=71.20 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=96.6
Q ss_pred cEEEEECCCCeEEeecccCCCCCCCCCce-EEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCc----ceEEEcccCC
Q 010011 111 DLHILDTSSHTWISPSVRGEGPEAREGHS-AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET----FVWKRATTSG 185 (520)
Q Consensus 111 ~~~~yd~~t~~W~~~~~~g~~p~~r~~hs-~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t----~~W~~v~~~~ 185 (520)
....||+.+++++.+.+.. -.++.+ +..-++++++.||... -...+..|++.+ ..|.+...
T Consensus 47 ~s~~yD~~tn~~rpl~v~t----d~FCSgg~~L~dG~ll~tGG~~~--------G~~~ir~~~p~~~~~~~~w~e~~~-- 112 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQT----DTFCSGGAFLPDGRLLQTGGDND--------GNKAIRIFTPCTSDGTCDWTESPN-- 112 (243)
T ss_pred EEEEEecCCCcEEeccCCC----CCcccCcCCCCCCCEEEeCCCCc--------cccceEEEecCCCCCCCCceECcc--
Confidence 4568999999999876432 222222 3334789999999632 134456677654 57887753
Q ss_pred CCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECC-C-----CcEEEeeCC-CCCCCCCceeEEEEECCEEEEE
Q 010011 186 NPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-T-----LTWKELNTS-GMVLSPRAGHSTVAFGKNLFVF 257 (520)
Q Consensus 186 ~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~-t-----~~W~~~~~~-~~~p~~R~~hs~~~~~~~iyv~ 257 (520)
.+..+|...+...+ +++++|+||.... .+.|-++ . ..|..+... ...+...+=+..+.-+++||++
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE
Confidence 37889999988877 8999999998732 2223232 1 122222211 1123344556666778999999
Q ss_pred ecccCCCCccCcEEEEecCCCcE-EEeeeCCCC
Q 010011 258 GGFTDSQNLYDDLYMIDVDSGLW-TKVITTGEG 289 (520)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~W-~~l~~~~~~ 289 (520)
+... -.+||..++++ +.++..+..
T Consensus 187 an~~--------s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 187 ANRG--------SIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EcCC--------cEEEeCCCCeEEeeCCCCCCC
Confidence 9853 57899999977 666665443
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.06 E-value=0.0011 Score=63.87 Aligned_cols=198 Identities=12% Similarity=0.141 Sum_probs=113.0
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCC---CCcc-eEEEECC-----EEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTP---RDSH-SCTTVGE-----NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGE 130 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~---R~~h-s~~~~~~-----~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~ 130 (520)
..++++||.|.+|..++. ++.+ ...+ ....++. ||..+...........+++|+..+++|+.+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--
Confidence 458999999999999862 2221 1111 1111221 455554322222345789999999999987632
Q ss_pred CCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE-cccCCCCCCCC----cceeEEeeCCEEEE
Q 010011 131 GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSAR----DSHTCSSWKNKIIV 205 (520)
Q Consensus 131 ~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~-v~~~~~~p~~r----~~h~~~~~~~~lyv 205 (520)
.+........+.+++.||.+.-.... .....+..||+.+.+|+. ++ +|..+ ....++.++++|.+
T Consensus 89 ~~~~~~~~~~v~~~G~lyw~~~~~~~------~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~ 158 (230)
T TIGR01640 89 PPHHPLKSRGVCINGVLYYLAYTLKT------NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAV 158 (230)
T ss_pred CCCccccCCeEEECCEEEEEEEECCC------CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEE
Confidence 22212222367789999988753210 111269999999999995 54 23322 23456667899888
Q ss_pred EecCCCCCcccCceEEEE-CCCCcEEEeeCCCCCCCCCc----eeEEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 206 IGGEDGHDYYLSDVHILD-TDTLTWKELNTSGMVLSPRA----GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd-~~t~~W~~~~~~~~~p~~R~----~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
+....... .-+||+++ -....|++.-.....+.+.. ....+..+++|++..... . ..-+..||++++
T Consensus 159 v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~---~~~~~~y~~~~~ 230 (230)
T TIGR01640 159 LKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N---PFYIFYYNVGEN 230 (230)
T ss_pred EEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C---ceEEEEEeccCC
Confidence 76543221 14688775 44567998654221112211 123455678887766531 0 112788888764
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.82 E-value=0.00073 Score=65.33 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=92.9
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceE-EEECCEEEEEcCCCCCCCCCcEEEEECCC----CeEEeecccCCCCCCC
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSC-TTVGENLYVFGGTDGMNPLRDLHILDTSS----HTWISPSVRGEGPEAR 135 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~~~~~g~~p~~r 135 (520)
.-..||+.+++++.+.+. .--.+.+- ..-++++.+.||..+ ..+.+-.|++.+ ..|.... ..|-.+|
T Consensus 47 ~s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~--~~m~~~R 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESP--NDMQSGR 118 (243)
T ss_pred EEEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECc--ccccCCC
Confidence 356799999999987532 22222222 233789999999854 334677788765 6787655 2488999
Q ss_pred CCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcC------cceEEEcccC-CCCCCCCcceeEEeeCCEEEEEe
Q 010011 136 EGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE------TFVWKRATTS-GNPPSARDSHTCSSWKNKIIVIG 207 (520)
Q Consensus 136 ~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~------t~~W~~v~~~-~~~p~~r~~h~~~~~~~~lyv~G 207 (520)
...++... +++++|+||... ..+.|-+. ...|..+... ...+..-+-+....-+++||+++
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~-----------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNN-----------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred ccccceECCCCCEEEEeCcCC-----------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE
Confidence 99988877 679999999631 11222221 2233323211 12344445555666699999998
Q ss_pred cCCCCCcccCceEEEECCCCcE-EEeeC
Q 010011 208 GEDGHDYYLSDVHILDTDTLTW-KELNT 234 (520)
Q Consensus 208 G~~~~~~~~~~i~~yd~~t~~W-~~~~~ 234 (520)
.. +-.+||.+++++ +.++.
T Consensus 188 n~--------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 188 NR--------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred cC--------CcEEEeCCCCeEEeeCCC
Confidence 74 356789999987 55554
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.71 E-value=0.009 Score=57.58 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=93.4
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCC---CCc-eEEEEC----C-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAR---EGH-SAALVG----K-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r---~~h-s~~~~~----~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~ 180 (520)
..++++||.|.+|..++. ++.++ ..+ ...-.+ . ++..+.... .......+++|+..++.|+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~------~~~~~~~~~Vys~~~~~Wr~ 84 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS------GNRNQSEHQVYTLGSNSWRT 84 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeec------CCCCCccEEEEEeCCCCccc
Confidence 579999999999998873 22111 111 111111 1 344443321 01123568899999999999
Q ss_pred cccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEE-eeCCCCCCCCCceeEEEEECCEEEEEec
Q 010011 181 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTSGMVLSPRAGHSTVAFGKNLFVFGG 259 (520)
Q Consensus 181 v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-~~~~~~~p~~R~~hs~~~~~~~iyv~GG 259 (520)
+... ++........+.+++.||-+.-..... ....|..||+.+++|.+ ++.+............+..++++-++..
T Consensus 85 ~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 85 IECS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred cccC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEe
Confidence 8732 121111222566799988876433211 11269999999999995 6531111111123456667888877765
Q ss_pred ccCCCCccCcEEEEe-cCCCcEEEeeeCC
Q 010011 260 FTDSQNLYDDLYMID-VDSGLWTKVITTG 287 (520)
Q Consensus 260 ~~~~~~~~~dv~~yd-~~~~~W~~l~~~~ 287 (520)
..... .-+||+++ -....|+++-..+
T Consensus 162 ~~~~~--~~~IWvl~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 162 KKDTN--NFDLWVLNDAGKQEWSKLFTVP 188 (230)
T ss_pred cCCCC--cEEEEEECCCCCCceeEEEEEc
Confidence 43211 14688886 4456799876543
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.50 E-value=0.13 Score=53.88 Aligned_cols=194 Identities=15% Similarity=0.208 Sum_probs=107.4
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccC--CC---CCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG--SP---PTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g--~~---P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~y 115 (520)
+++||+.+.. ..++.||..++ .|+.-.... .. +.++...+.+..+++||+.+. ...++++
T Consensus 69 ~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------~g~l~al 135 (394)
T PRK11138 69 YNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------KGQVYAL 135 (394)
T ss_pred CCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------CCEEEEE
Confidence 5578886542 35899998765 588622110 00 012333445677889997542 2469999
Q ss_pred ECCCCe--EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCCCCC
Q 010011 116 DTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSAR 191 (520)
Q Consensus 116 d~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r 191 (520)
|..+.+ |+... +.+ ...+-++.++.+|+..+ ...++.+|.++. .|+.-... +....+
T Consensus 136 d~~tG~~~W~~~~-----~~~-~~ssP~v~~~~v~v~~~------------~g~l~ald~~tG~~~W~~~~~~-~~~~~~ 196 (394)
T PRK11138 136 NAEDGEVAWQTKV-----AGE-ALSRPVVSDGLVLVHTS------------NGMLQALNESDGAVKWTVNLDV-PSLTLR 196 (394)
T ss_pred ECCCCCCcccccC-----CCc-eecCCEEECCEEEEECC------------CCEEEEEEccCCCEeeeecCCC-Cccccc
Confidence 998754 86532 111 11233455788887544 245899999865 48765321 111112
Q ss_pred cceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCC--CCCCCCC---ceeEEEEECCEEEEEecccCCC
Q 010011 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTS--GMVLSPR---AGHSTVAFGKNLFVFGGFTDSQ 264 (520)
Q Consensus 192 ~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~--~~~p~~R---~~hs~~~~~~~iyv~GG~~~~~ 264 (520)
...+-++.++.+|+..+ + ..++.+|+++.+ |+.-... +.....| ...+-+..++.+|+.+..
T Consensus 197 ~~~sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~---- 265 (394)
T PRK11138 197 GESAPATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN---- 265 (394)
T ss_pred CCCCCEEECCEEEEEcC-C------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC----
Confidence 22333445666666432 2 347888887654 7642210 0000001 123345668888876531
Q ss_pred CccCcEEEEecCCC--cEEE
Q 010011 265 NLYDDLYMIDVDSG--LWTK 282 (520)
Q Consensus 265 ~~~~dv~~yd~~~~--~W~~ 282 (520)
..++.+|++++ .|+.
T Consensus 266 ---g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 266 ---GNLVALDLRSGQIVWKR 282 (394)
T ss_pred ---CeEEEEECCCCCEEEee
Confidence 34899999887 4875
No 54
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.39 E-value=0.14 Score=49.08 Aligned_cols=184 Identities=23% Similarity=0.318 Sum_probs=105.7
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCe--EEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
.++.+|+..+ ...++++|..+++ |+.- .+. +.....+..++.||+..+ -+.++.+|..+
T Consensus 35 ~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~-----~~~-~~~~~~~~~~~~v~v~~~------~~~l~~~d~~t 95 (238)
T PF13360_consen 35 DGGRVYVASG-------DGNLYALDAKTGKVLWRFD-----LPG-PISGAPVVDGGRVYVGTS------DGSLYALDAKT 95 (238)
T ss_dssp ETTEEEEEET-------TSEEEEEETTTSEEEEEEE-----CSS-CGGSGEEEETTEEEEEET------TSEEEEEETTT
T ss_pred eCCEEEEEcC-------CCEEEEEECCCCCEEEEee-----ccc-cccceeeecccccccccc------eeeeEecccCC
Confidence 3667887732 2569999997764 7762 222 222225777899988862 13799999877
Q ss_pred Ce--EE-eecccCCCCC-CCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCCC----
Q 010011 120 HT--WI-SPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPS---- 189 (520)
Q Consensus 120 ~~--W~-~~~~~g~~p~-~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~---- 189 (520)
.+ |+ .... ..+. .+......+.++.+|+... ...++.+|+++. .|+..........
T Consensus 96 G~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 96 GKVLWSIYLTS--SPPAGVRSSSSPAVDGDRLYVGTS------------SGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp SCEEEEEEE-S--SCTCSTB--SEEEEETTEEEEEET------------CSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred cceeeeecccc--ccccccccccCceEecCEEEEEec------------cCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 65 87 3331 1111 2233344445677777653 356899998865 4766542111111
Q ss_pred -CCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCc
Q 010011 190 -ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (520)
Q Consensus 190 -~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~ 266 (520)
.......+..++.+|+..+.. .+..+|.++.+ |+.. ..+ ........++.+|+.. ..
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~~~~-~~----- 221 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLYVTS-SD----- 221 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-TT-----
T ss_pred ecccccceEEECCEEEEEcCCC-------eEEEEECCCCCEEEEec-CCC------ccCCceeeCCEEEEEe-CC-----
Confidence 111233444567888876543 15666999887 7433 211 1222445567777766 21
Q ss_pred cCcEEEEecCCCc
Q 010011 267 YDDLYMIDVDSGL 279 (520)
Q Consensus 267 ~~dv~~yd~~~~~ 279 (520)
..++++|+++++
T Consensus 222 -~~l~~~d~~tG~ 233 (238)
T PF13360_consen 222 -GRLYALDLKTGK 233 (238)
T ss_dssp -TEEEEEETTTTE
T ss_pred -CEEEEEECCCCC
Confidence 459999999884
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.31 E-value=0.17 Score=48.39 Aligned_cols=179 Identities=21% Similarity=0.277 Sum_probs=102.2
Q ss_pred CeEEEEECCCC--eEEeeeccCCCCCCCCcce--EEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccCCCCC
Q 010011 60 NQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHS--CTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPE 133 (520)
Q Consensus 60 ~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~ 133 (520)
..+.++|+.++ .|+.- +..+..+.. .+..++++|+..+ ...++++|..+.+ |+... +.
T Consensus 3 g~l~~~d~~tG~~~W~~~-----~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~-----~~ 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD-----LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL-----PG 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEE-----CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC-----SS
T ss_pred CEEEEEECCCCCEEEEEE-----CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec-----cc
Confidence 35788998776 48772 211122223 3447889999842 4689999998876 76532 11
Q ss_pred CCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEE-EcccCCCCCCCCcceeEEeeCCEEEEEecCC
Q 010011 134 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGED 210 (520)
Q Consensus 134 ~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~-~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~ 210 (520)
+ ........++.+|+..+ .+.++.+|..+. .|+ ........+ .+......+.++.+|+...
T Consensus 67 ~-~~~~~~~~~~~v~v~~~------------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 130 (238)
T PF13360_consen 67 P-ISGAPVVDGGRVYVGTS------------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-- 130 (238)
T ss_dssp C-GGSGEEEETTEEEEEET------------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET--
T ss_pred c-ccceeeecccccccccc------------eeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec--
Confidence 1 22224777889988764 236899997654 688 443211111 2223334445677766643
Q ss_pred CCCcccCceEEEECCCCc--EEEeeCCCCCCC-----CCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc--EE
Q 010011 211 GHDYYLSDVHILDTDTLT--WKELNTSGMVLS-----PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WT 281 (520)
Q Consensus 211 ~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~-----~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~ 281 (520)
...++.+|+++++ |..-...+.... .......+..++.+|+..+... +..+|.+++. |+
T Consensus 131 -----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 131 -----SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-------VVAVDLATGEKLWS 198 (238)
T ss_dssp -----CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-------EEEEETTTTEEEEE
T ss_pred -----cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-------EEEEECCCCCEEEE
Confidence 3468999998765 665432111001 1112334445678888776431 5667999997 84
Q ss_pred E
Q 010011 282 K 282 (520)
Q Consensus 282 ~ 282 (520)
.
T Consensus 199 ~ 199 (238)
T PF13360_consen 199 K 199 (238)
T ss_dssp E
T ss_pred e
Confidence 3
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.83 E-value=0.81 Score=47.84 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=98.5
Q ss_pred CeEEEEECCCCe--EEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeeccc--CCCCC
Q 010011 60 NQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVR--GEGPE 133 (520)
Q Consensus 60 ~~~~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~--g~~p~ 133 (520)
..++.+|..+++ |+... ..+....+...+-+..++.+|+..+ ...++.+|..+.+ |+..... +....
T Consensus 170 g~l~ald~~tG~~~W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNL-DVPSLTLRGESAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred CEEEEEEccCCCEeeeecC-CCCcccccCCCCCEEECCEEEEEcC------CCEEEEEEccCChhhheeccccCCCccch
Confidence 458899988764 87632 1111111223344555777777543 2458889988764 8642110 00000
Q ss_pred C---CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEEEEec
Q 010011 134 A---REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (520)
Q Consensus 134 ~---r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG 208 (520)
. ....+-++.++.+|+.+. ...++++|+.+. .|+.-.. . . ...+..++.||+...
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~------------~g~l~ald~~tG~~~W~~~~~--~---~---~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAY------------NGNLVALDLRSGQIVWKREYG--S---V---NDFAVDGGRIYLVDQ 302 (394)
T ss_pred hcccccCCCcEEECCEEEEEEc------------CCeEEEEECCCCCEEEeecCC--C---c---cCcEEECCEEEEEcC
Confidence 0 112334566888888654 135889998865 5876421 1 1 124566889998652
Q ss_pred CCCCCcccCceEEEECCCCc--EEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 209 EDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
...++.+|+++.+ |+.-. ...+...+.+..++++|+.... ..++++|..+++
T Consensus 303 -------~g~l~ald~~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~~-------G~l~~ld~~tG~ 356 (394)
T PRK11138 303 -------NDRVYALDTRGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDSE-------GYLHWINREDGR 356 (394)
T ss_pred -------CCeEEEEECCCCcEEEcccc-----cCCCcccCCEEECCEEEEEeCC-------CEEEEEECCCCC
Confidence 2458999998764 76422 1122333445678888774321 248899998875
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.70 E-value=0.95 Score=46.88 Aligned_cols=188 Identities=16% Similarity=0.211 Sum_probs=100.3
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
++++|+.+.. ..++.||..++ .|+.- .+. +...+.+..++.+|+.+. ...++.+|..+.
T Consensus 65 ~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~-----~~~-~~~~~p~v~~~~v~v~~~------~g~l~ald~~tG 125 (377)
T TIGR03300 65 GGKVYAADAD-------GTVVALDAETGKRLWRVD-----LDE-RLSGGVGADGGLVFVGTE------KGEVIALDAEDG 125 (377)
T ss_pred CCEEEEECCC-------CeEEEEEccCCcEeeeec-----CCC-CcccceEEcCCEEEEEcC------CCEEEEEECCCC
Confidence 5567765431 35899998765 48762 221 122234455777876542 246999998775
Q ss_pred e--EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeE
Q 010011 121 T--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTC 196 (520)
Q Consensus 121 ~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~ 196 (520)
+ |+... +.. ...+.+..++.+|+..+ ...++.+|+++. .|+.-... +....+...+.
T Consensus 126 ~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~------------~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp 186 (377)
T TIGR03300 126 KELWRAKL-----SSE-VLSPPLVANGLVVVRTN------------DGRLTALDAATGERLWTYSRVT-PALTLRGSASP 186 (377)
T ss_pred cEeeeecc-----Cce-eecCCEEECCEEEEECC------------CCeEEEEEcCCCceeeEEccCC-CceeecCCCCC
Confidence 4 86532 111 11223445677777543 245889998764 57754321 11111222334
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCC--cEEEeeCCC--CCCCCC---ceeEEEEECCEEEEEecccCCCCccCc
Q 010011 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSG--MVLSPR---AGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (520)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~~~~~~--~~p~~R---~~hs~~~~~~~iyv~GG~~~~~~~~~d 269 (520)
+..++.+| +|..+ ..++.+|+++. .|+.-...+ .....| ...+.+..++.+|+.... ..
T Consensus 187 ~~~~~~v~-~~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-------g~ 252 (377)
T TIGR03300 187 VIADGGVL-VGFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-------GR 252 (377)
T ss_pred EEECCEEE-EECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-------CE
Confidence 45566544 44322 35888998765 476432100 000011 122344567777775431 34
Q ss_pred EEEEecCCC--cEEE
Q 010011 270 LYMIDVDSG--LWTK 282 (520)
Q Consensus 270 v~~yd~~~~--~W~~ 282 (520)
+++||++++ .|..
T Consensus 253 l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 253 VAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEECCCCcEEEee
Confidence 899999876 4754
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.65 E-value=0.43 Score=49.05 Aligned_cols=123 Identities=22% Similarity=0.354 Sum_probs=76.6
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCC----
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLR---- 110 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~---- 110 (520)
..++++ .+++|+..+.. ..+.+||+.+..-...+ .++.+...-.++.++++||++..........
T Consensus 69 ~~F~al-~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~ 137 (342)
T PF07893_consen 69 MDFFAL-HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDF 137 (342)
T ss_pred eEEEEe-cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccc
Confidence 334444 46789888664 23789999998877533 4555555567778899999998764332211
Q ss_pred -cEEEE--E--------CCCCeEEeecccCCCCCCCCC-------ceEEEE-CCEEEE-EeCCCCCCCCCCcceeceeEE
Q 010011 111 -DLHIL--D--------TSSHTWISPSVRGEGPEAREG-------HSAALV-GKRLFI-FGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 111 -~~~~y--d--------~~t~~W~~~~~~g~~p~~r~~-------hs~~~~-~~~lyv-~GG~~~~~~~~~~~~~~~v~~ 170 (520)
.++++ + .....|+.++ ++|-.+.. .+.+++ +..|+| .-|. ....|.
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-----------~~GTys 203 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-----------RWGTYS 203 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCC-----------ceEEEE
Confidence 44444 3 2234677765 33333322 233444 567888 3331 034899
Q ss_pred EEcCcceEEEcc
Q 010011 171 LNTETFVWKRAT 182 (520)
Q Consensus 171 ~d~~t~~W~~v~ 182 (520)
||+.+.+|+++.
T Consensus 204 fDt~~~~W~~~G 215 (342)
T PF07893_consen 204 FDTESHEWRKHG 215 (342)
T ss_pred EEcCCcceeecc
Confidence 999999999996
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.54 E-value=0.61 Score=47.88 Aligned_cols=127 Identities=15% Similarity=0.274 Sum_probs=78.4
Q ss_pred eEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceece
Q 010011 89 SCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYND 167 (520)
Q Consensus 89 s~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 167 (520)
.++.+ +++|+.++.. ..+.+||+.+..-...+ .++.+...-.++.++++||++............... .
T Consensus 70 ~F~al~gskIv~~d~~------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~-~ 139 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFP-C 139 (342)
T ss_pred EEEEecCCeEEEEcCC------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccce-e
Confidence 34444 8899998654 45899999998877555 455555556778889999999886332111111001 3
Q ss_pred eEEE--E--------cCcceEEEcccCCCCCCCCc-------ceeEEee-CCEEEE-EecCCCCCcccCceEEEECCCCc
Q 010011 168 LYIL--N--------TETFVWKRATTSGNPPSARD-------SHTCSSW-KNKIIV-IGGEDGHDYYLSDVHILDTDTLT 228 (520)
Q Consensus 168 v~~~--d--------~~t~~W~~v~~~~~~p~~r~-------~h~~~~~-~~~lyv-~GG~~~~~~~~~~i~~yd~~t~~ 228 (520)
++.+ + ...-.|+.++ ++|..+. -.+.+++ +..|+| .-|.. ...+.||+++.+
T Consensus 140 FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~ 210 (342)
T PF07893_consen 140 FEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHE 210 (342)
T ss_pred EEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcc
Confidence 3333 3 2345788876 3333332 2334445 667777 33321 238999999999
Q ss_pred EEEeeC
Q 010011 229 WKELNT 234 (520)
Q Consensus 229 W~~~~~ 234 (520)
|+.+..
T Consensus 211 W~~~Gd 216 (342)
T PF07893_consen 211 WRKHGD 216 (342)
T ss_pred eeeccc
Confidence 999865
No 60
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.63 E-value=0.51 Score=46.89 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=71.5
Q ss_pred eeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCC--CCCCC
Q 010011 164 YYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMVLS 240 (520)
Q Consensus 164 ~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~--~~~p~ 240 (520)
.+..+..||+.+.+|..+... ..-.-..+... +++||+.|-....+.-...+..||.++.+|+.+... ...|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~----i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG----ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC----ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 367899999999999988632 11122334434 677777776544432345689999999999988762 23444
Q ss_pred CCceeEEEEEC-CEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 241 PRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 241 ~R~~hs~~~~~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
+-...+....+ +++++.|..... ...+..|| ...|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g---~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANG---STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCC---CceEEEEc--CCceEeccc
Confidence 43323322223 467777776222 23467775 778998876
No 61
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.17 E-value=5.3 Score=42.38 Aligned_cols=210 Identities=15% Similarity=0.107 Sum_probs=103.7
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
++|++|+... .... ...+|++|+.+++...+. ..+..-........+.+|++....++ ..++|++|+.+.
T Consensus 211 pDG~~lay~s-~~~g---~~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~ 280 (435)
T PRK05137 211 PNRQEITYMS-YANG---RPRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG 280 (435)
T ss_pred CCCCEEEEEE-ecCC---CCEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC---CceEEEEECCCC
Confidence 5666555443 2211 257999999998887764 22211111122222445555433222 357999999988
Q ss_pred eEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeC
Q 010011 121 TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK 200 (520)
Q Consensus 121 ~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~ 200 (520)
..+++.. .+.. ........+++-++|... ..+ ...+|++|..+...+.+... ..........-+
T Consensus 281 ~~~~Lt~---~~~~-~~~~~~spDG~~i~f~s~-----~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~Spd 344 (435)
T PRK05137 281 TTTRLTD---SPAI-DTSPSYSPDGSQIVFESD-----RSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPR 344 (435)
T ss_pred ceEEccC---CCCc-cCceeEcCCCCEEEEEEC-----CCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCC
Confidence 7766542 1111 111222234443334321 001 24689999988877777521 111111112234
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcE
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
++.+++.....+ ...++.+|+.+...+.+... .....-...-+++.+++-...........+|++|+....-
T Consensus 345 G~~ia~~~~~~~---~~~i~~~d~~~~~~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 345 GDLIAFTKQGGG---QFSIGVMKPDGSGERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCEEEEEEcCCC---ceEEEEEECCCCceEeccCC-----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 444444332222 14688999877766655431 1112222333455444433322111124699999988766
Q ss_pred EEee
Q 010011 281 TKVI 284 (520)
Q Consensus 281 ~~l~ 284 (520)
+.+.
T Consensus 417 ~~l~ 420 (435)
T PRK05137 417 REVP 420 (435)
T ss_pred EEcc
Confidence 6554
No 62
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.89 E-value=1.1 Score=46.47 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=86.9
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEE-eecccCCCCCCCCCceEEEECCE-EEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAREGHSAALVGKR-LFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~hs~~~~~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
-.+.+.+|.++. -.+|..|-.++.-. .+-.. ..|. .. +....++. ..+++|+ ..-+|.||
T Consensus 225 ~plllvaG~d~~---lrifqvDGk~N~~lqS~~l~-~fPi--~~-a~f~p~G~~~i~~s~r-----------rky~ysyD 286 (514)
T KOG2055|consen 225 APLLLVAGLDGT---LRIFQVDGKVNPKLQSIHLE-KFPI--QK-AEFAPNGHSVIFTSGR-----------RKYLYSYD 286 (514)
T ss_pred CceEEEecCCCc---EEEEEecCccChhheeeeec-cCcc--ce-eeecCCCceEEEeccc-----------ceEEEEee
Confidence 348888887654 34666666665521 11100 1111 11 11222444 7777774 34489999
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECC
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK 252 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~ 252 (520)
+.+.+..++......+.+-...--+...+.++++-|..+ -|+.+...|+.|..--. ++-.-...+....+.
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~K---ieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSFK---IEGVVSDFTFSSDSK 357 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhheee---eccEEeeEEEecCCc
Confidence 999999998754444422222223445666777777543 47888888888764321 222223333334456
Q ss_pred EEEEEecccCCCCccCcEEEEecCCCc
Q 010011 253 NLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 253 ~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.|++.||.. .||+||+..+.
T Consensus 358 ~l~~~~~~G-------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 358 ELLASGGTG-------EVYVWNLRQNS 377 (514)
T ss_pred EEEEEcCCc-------eEEEEecCCcc
Confidence 688888863 49999999884
No 63
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.88 E-value=5.5 Score=41.14 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=92.7
Q ss_pred CeEEEEECCCC--eEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeeccc--CCCCC
Q 010011 60 NQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVR--GEGPE 133 (520)
Q Consensus 60 ~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~--g~~p~ 133 (520)
..++.+|..++ .|+... ..+....+...+.+..++.+|+ |..+ ..++.+|+.+.+ |+..... +....
T Consensus 155 g~l~a~d~~tG~~~W~~~~-~~~~~~~~~~~sp~~~~~~v~~-~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSR-VTPALTLRGSASPVIADGGVLV-GFAG-----GKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred CeEEEEEcCCCceeeEEcc-CCCceeecCCCCCEEECCEEEE-ECCC-----CEEEEEEccCCCEeeeeccccCCCCCch
Confidence 45888998765 477532 1111111233344556766554 4321 368999987754 7642100 00000
Q ss_pred C---CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEEEEec
Q 010011 134 A---REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (520)
Q Consensus 134 ~---r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG 208 (520)
. ....+.+..++.+|+... ...+++||+++. .|+.-. + ...+.+..++.+|+...
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~------------~g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSY------------QGRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA 287 (377)
T ss_pred hhhhccCCccEEECCEEEEEEc------------CCEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC
Confidence 0 112233455778887543 235888998764 476531 1 11234456888887642
Q ss_pred CCCCCcccCceEEEECCCC--cEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 209 EDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~--~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
...++++|..+. .|+.-.. ..+...+.+..++.+|+.. .+ ..++++|..+++
T Consensus 288 -------~G~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~~------G~l~~~d~~tG~ 341 (377)
T TIGR03300 288 -------DGVVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-FE------GYLHWLSREDGS 341 (377)
T ss_pred -------CCeEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-CC------CEEEEEECCCCC
Confidence 235889998765 4764221 1122223345677777643 21 348999987764
No 64
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.48 E-value=0.59 Score=46.45 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=59.2
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeC--CCCCC
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT--GEGPS 291 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~--~~~p~ 291 (520)
.+..+..||+.+.+|..+.. -...-. ..+.. .++++|+.|-++-++.....+..||.++.+|..+... ...|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~---~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN---GISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC---CceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 46789999999999998865 212211 22333 3677888876665443456699999999999988763 23343
Q ss_pred CceeeeeeeeccccCCEEEEEccc
Q 010011 292 ARFSVAGDCLDPLKGGVLVFIGGC 315 (520)
Q Consensus 292 ~r~~~~~~~~~~~~~~~l~v~GG~ 315 (520)
+-... .+.......+++.|..
T Consensus 90 pv~a~---~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 90 PVTAL---TFISNDGSNFWVAGRS 110 (281)
T ss_pred cEEEE---EeeccCCceEEEecee
Confidence 32221 1222345567777765
No 65
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.45 E-value=7.9 Score=41.01 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=76.4
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p 188 (520)
..+|++|+.+.+.+.+. ..+..... .....++ +|++..... -..++|++|+.+...+.+... +
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~-~~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt~~---~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFA-PRFSPDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLTDS---P 289 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccC-cEECCCCCEEEEEEecC---------CCceEEEEECCCCceEEccCC---C
Confidence 57999999998877654 22222111 1222234 454443311 136799999998887777532 1
Q ss_pred CCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccC
Q 010011 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (520)
Q Consensus 189 ~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 268 (520)
. .........+++.++|.....+ ..++|.+|..+...+.+... ..........-+++.+++...... ..
T Consensus 290 ~-~~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---~~ 358 (435)
T PRK05137 290 A-IDTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---QF 358 (435)
T ss_pred C-ccCceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC---ce
Confidence 1 1111122234444444332211 24799999988877777531 111222223334443333322211 24
Q ss_pred cEEEEecCCCcEEEee
Q 010011 269 DLYMIDVDSGLWTKVI 284 (520)
Q Consensus 269 dv~~yd~~~~~W~~l~ 284 (520)
.++++|+.+.....+.
T Consensus 359 ~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 359 SIGVMKPDGSGERILT 374 (435)
T ss_pred EEEEEECCCCceEecc
Confidence 6899998777665553
No 66
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.24 E-value=3.8 Score=38.29 Aligned_cols=145 Identities=13% Similarity=0.082 Sum_probs=73.9
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEE--eeecc-CCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWS--QPVIK-GSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~--~l~~~-g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
+.+|+|-| +.+|+++....... .+... +.+|. .--++... ++++|+|-| +..|+|+..
T Consensus 17 g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg-------~~yw~~~~~ 79 (194)
T cd00094 17 GELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKG-------DKYWVYTGK 79 (194)
T ss_pred CEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECC-------CEEEEEcCc
Confidence 57999966 35788876522111 11110 11222 12222232 378999976 368888866
Q ss_pred CCeEEe---ecccCCCCC--CCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE-----ccc-CCC
Q 010011 119 SHTWIS---PSVRGEGPE--AREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-----ATT-SGN 186 (520)
Q Consensus 119 t~~W~~---~~~~g~~p~--~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~-----v~~-~~~ 186 (520)
+..+.. +... ..|. ..-..+.... ++++|+|-| +..|+||..+.+... +.. -..
T Consensus 80 ~~~~~~Pk~i~~~-~~~~~~~~iDAA~~~~~~~~~yfFkg-------------~~y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 80 NLEPGYPKPISDL-GFPPTVKQIDAALRWPDNGKTYFFKG-------------DKYWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred ccccCCCcchhhc-CCCCCCCCccEEEEEcCCCEEEEEeC-------------CEEEEEeCCCccccCCCCcchhhcCCC
Confidence 423221 1110 1121 1122222222 578999988 457888876554321 110 011
Q ss_pred CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc
Q 010011 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (520)
Q Consensus 187 ~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~ 228 (520)
+|.. ...+....++++|+|-| +..++||..+.+
T Consensus 146 ~p~~-idaa~~~~~~~~yfF~g--------~~y~~~d~~~~~ 178 (194)
T cd00094 146 VPDK-VDAAFRWLDGYYYFFKG--------DQYWRFDPRSKE 178 (194)
T ss_pred cCCC-cceeEEeCCCcEEEEEC--------CEEEEEeCccce
Confidence 2222 22233233488999976 458899988765
No 67
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.94 E-value=5.1 Score=37.45 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=77.0
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE--Eeeccc-CCCCCCCCCceEEEEC-CEEEEEeCCCCCCCCCCcce
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW--ISPSVR-GEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVY 164 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~-g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~ 164 (520)
+++...+++|+|-| +.+|+++...... ..+... ..+|. .-..+..... +++|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg------------ 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG------------ 70 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC------------
Confidence 34445689999976 3578887652211 111110 01221 1222222223 78999977
Q ss_pred eceeEEEEcCcceEE---EcccCCCCCC-CCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEE-----eeC
Q 010011 165 YNDLYILNTETFVWK---RATTSGNPPS-ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LNT 234 (520)
Q Consensus 165 ~~~v~~~d~~t~~W~---~v~~~~~~p~-~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----~~~ 234 (520)
+..|+|+..+..+. .+...+-++. .....+.... ++++|+|-| +..|+||..+++... +..
T Consensus 71 -~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~ 141 (194)
T cd00094 71 -DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIET 141 (194)
T ss_pred -CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchhh
Confidence 35777776542211 1111111111 2222233222 689999977 357888876554321 110
Q ss_pred CCCCCCCCceeEEEEEC-CEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 235 SGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 235 ~~~~p~~R~~hs~~~~~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.-.-.+..-.++.... +++|+|-|. ..|+||..+.+
T Consensus 142 -~w~g~p~~idaa~~~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 142 -DFPGVPDKVDAAFRWLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred -cCCCcCCCcceeEEeCCCcEEEEECC--------EEEEEeCccce
Confidence 0001122222333344 889999885 38999988765
No 68
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.88 E-value=9.5 Score=39.81 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=78.5
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEEC-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p 188 (520)
..++++|+.+.....+.. .+..... .....+ +.|++..... -..++|.+|+.+...+.+......
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~---------~~~~i~~~d~~~~~~~~l~~~~~~- 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKD---------GNPDIYVMDLDGKQLTRLTNGPGI- 279 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCC---------CCccEEEEECCCCCEEECCCCCCC-
Confidence 579999998886655441 1211111 122223 3465543311 125789999998887777532111
Q ss_pred CCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccC
Q 010011 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (520)
Q Consensus 189 ~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 268 (520)
.... ....+++.+++...... ..+++.+|..+..++.+...+. ........-+++.+++..... -..
T Consensus 280 --~~~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~----~~~~~~~spdg~~i~~~~~~~---~~~ 346 (417)
T TIGR02800 280 --DTEP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGG----YNASPSWSPDGDLIAFVHREG---GGF 346 (417)
T ss_pred --CCCE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCC----CccCeEECCCCCEEEEEEccC---Cce
Confidence 1111 11224443333332221 2379999999888887754221 111112233455555554432 124
Q ss_pred cEEEEecCCCcEEEeee
Q 010011 269 DLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 269 dv~~yd~~~~~W~~l~~ 285 (520)
.++++|+.+..++.+..
T Consensus 347 ~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 347 NIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEEEeCCCCCeEEccC
Confidence 69999999977766643
No 69
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.77 E-value=11 Score=40.19 Aligned_cols=205 Identities=14% Similarity=0.156 Sum_probs=101.6
Q ss_pred EcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 40 v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
.++|++|+..- ... ....+|++|+.+++-..+. ..+..-........+.+|++....++ ..++|++|+.+
T Consensus 226 SPDG~~La~~s-~~~---g~~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~t 295 (448)
T PRK04792 226 SPDGRKLAYVS-FEN---RKAEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIAT 295 (448)
T ss_pred CCCCCEEEEEE-ecC---CCcEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCC
Confidence 34566555432 111 1257999999888766653 22211111111122445665543322 25799999999
Q ss_pred CeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe
Q 010011 120 HTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (520)
Q Consensus 120 ~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~ 198 (520)
.+.+++.... ..........++ .|++..... . ...+|++|+.+.+++.+...+.. .......
T Consensus 296 g~~~~lt~~~----~~~~~p~wSpDG~~I~f~s~~~------g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~S 358 (448)
T PRK04792 296 KALTRITRHR----AIDTEPSWHPDGKSLIFTSERG------G---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSIT 358 (448)
T ss_pred CCeEECccCC----CCccceEECCCCCEEEEEECCC------C---CceEEEEECCCCCEEEEecCCCC----CcCeeEC
Confidence 8887765211 111111222244 454443211 1 25799999999988887532211 1111222
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 199 ~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
-+++.+++.+.... ...++.+|+.+...+.+.... ... .. ...-+++.+++....+. ...++++|.+ +
T Consensus 359 pDG~~l~~~~~~~g---~~~I~~~dl~~g~~~~lt~~~---~d~-~p-s~spdG~~I~~~~~~~g---~~~l~~~~~~-G 426 (448)
T PRK04792 359 PDGRSMIMVNRTNG---KFNIARQDLETGAMQVLTSTR---LDE-SP-SVAPNGTMVIYSTTYQG---KQVLAAVSID-G 426 (448)
T ss_pred CCCCEEEEEEecCC---ceEEEEEECCCCCeEEccCCC---CCC-Cc-eECCCCCEEEEEEecCC---ceEEEEEECC-C
Confidence 34444444433322 246899999998887765421 110 11 23334444444333221 2347888864 4
Q ss_pred cEEEe
Q 010011 279 LWTKV 283 (520)
Q Consensus 279 ~W~~l 283 (520)
.+...
T Consensus 427 ~~~~~ 431 (448)
T PRK04792 427 RFKAR 431 (448)
T ss_pred CceEE
Confidence 44443
No 70
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.76 E-value=11 Score=39.89 Aligned_cols=198 Identities=13% Similarity=0.137 Sum_probs=99.1
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
++|++|+... ... ....+|++|+.+++-+.+.. .+.. ....... -+++|++..-.++ ..++|++|+.+
T Consensus 208 pDG~~la~~s-~~~---~~~~l~~~~l~~g~~~~l~~---~~g~-~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~ 276 (430)
T PRK00178 208 PDGKRIAYVS-FEQ---KRPRIFVQNLDTGRREQITN---FEGL-NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLAS 276 (430)
T ss_pred CCCCEEEEEE-cCC---CCCEEEEEECCCCCEEEccC---CCCC-cCCeEECCCCCEEEEEEccCC---CceEEEEECCC
Confidence 5676665443 221 12479999999888777541 1110 1111111 2345554332222 25899999999
Q ss_pred CeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe
Q 010011 120 HTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (520)
Q Consensus 120 ~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~ 198 (520)
...+++.. .+. .........++ .|++..... + ...+|++|+.+.+++.+...+ .........
T Consensus 277 ~~~~~lt~---~~~-~~~~~~~spDg~~i~f~s~~~------g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~S 339 (430)
T PRK00178 277 RQLSRVTN---HPA-IDTEPFWGKDGRTLYFTSDRG------G---KPQIYKVNVNGGRAERVTFVG----NYNARPRLS 339 (430)
T ss_pred CCeEEccc---CCC-CcCCeEECCCCCEEEEEECCC------C---CceEEEEECCCCCEEEeecCC----CCccceEEC
Confidence 88876642 111 11111222233 455443211 1 246899999888888775321 111111222
Q ss_pred eC-CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCC
Q 010011 199 WK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 199 ~~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
.+ +.|++..... . ...++.+|+.+...+.+...+. ...-...-+++.+++.....+ ...++..+...
T Consensus 340 pdg~~i~~~~~~~-~---~~~l~~~dl~tg~~~~lt~~~~-----~~~p~~spdg~~i~~~~~~~g---~~~l~~~~~~g 407 (430)
T PRK00178 340 ADGKTLVMVHRQD-G---NFHVAAQDLQRGSVRILTDTSL-----DESPSVAPNGTMLIYATRQQG---RGVLMLVSING 407 (430)
T ss_pred CCCCEEEEEEccC-C---ceEEEEEECCCCCEEEccCCCC-----CCCceECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 24 4444443222 2 2359999999988887754211 111123335565555543322 23467777654
Q ss_pred C
Q 010011 278 G 278 (520)
Q Consensus 278 ~ 278 (520)
.
T Consensus 408 ~ 408 (430)
T PRK00178 408 R 408 (430)
T ss_pred C
Confidence 3
No 71
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.33 E-value=14 Score=39.94 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=66.1
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccC-CCCCC-CCCceEEEEC-CEEEEEeCCCCCCCCCCc
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRG-EGPEA-REGHSAALVG-KRLFIFGGCGKSSNTNDE 162 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g-~~p~~-r~~hs~~~~~-~~lyv~GG~~~~~~~~~~ 162 (520)
.+-+..+++||+.... ..++.+|..+.+ |+...... ....+ ......++.+ +++|+...
T Consensus 55 ~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---------- 118 (488)
T cd00216 55 GTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---------- 118 (488)
T ss_pred cCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC----------
Confidence 3446779999987542 478999998755 87532111 00000 1112234445 77776433
Q ss_pred ceeceeEEEEcCc--ceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCC---cccCceEEEECCCCc--EEEe
Q 010011 163 VYYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHD---YYLSDVHILDTDTLT--WKEL 232 (520)
Q Consensus 163 ~~~~~v~~~d~~t--~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~---~~~~~i~~yd~~t~~--W~~~ 232 (520)
...++.+|.++ ..|+.-......+......+.++.++.+|+ |...... .....++.||.++.+ |+.-
T Consensus 119 --~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 119 --DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred --CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 24688999875 458765321000000012233445666554 4322111 124568999998654 8754
No 72
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.24 E-value=15 Score=40.10 Aligned_cols=125 Identities=18% Similarity=0.138 Sum_probs=68.3
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccC-CC-C---CCCCCceEEEECCEEEEEeCCCCCCCCC
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRG-EG-P---EAREGHSAALVGKRLFIFGGCGKSSNTN 160 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g-~~-p---~~r~~hs~~~~~~~lyv~GG~~~~~~~~ 160 (520)
.+-+++++.||+... ...++.+|..|.+ |+.-.... .. + ......+.++.++++|+...
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------- 128 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------
Confidence 344567899999654 2369999998754 87532110 00 0 01112334566778876432
Q ss_pred CcceeceeEEEEcCcc--eEEEcccCCCCCC-CCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEee
Q 010011 161 DEVYYNDLYILNTETF--VWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (520)
Q Consensus 161 ~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~-~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~ 233 (520)
...++++|.++. .|+.-.. .... .....+-++.++.+|+-.... .......+..||.++.+ |+.-.
T Consensus 129 ----dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 129 ----DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ----CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEeccC
Confidence 246899998765 5775431 1111 112223445678776643211 11134568899998765 76443
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.05 E-value=1.2 Score=46.19 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=78.8
Q ss_pred EEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCC-CCcceEEEECCEEEEEcCCCCCCCCCcEEE
Q 010011 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~ 114 (520)
++...++|...++++|.. .-+|.||..+.+-.++.....++.+ -..+. +...+.+.++-|.. .-+++
T Consensus 262 ~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~Fe-VShd~~fia~~G~~-----G~I~l 329 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFE-VSHDSNFIAIAGNN-----GHIHL 329 (514)
T ss_pred eeeecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeE-ecCCCCeEEEcccC-----ceEEe
Confidence 344555565466777742 4589999999998887533333321 11222 23344455555543 34778
Q ss_pred EECCCCeEEe-ecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcc
Q 010011 115 LDTSSHTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 115 yd~~t~~W~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~ 193 (520)
+...|++|.. +. ++......+....+..|++.||+ ..+|++|+.+.+....-. +-..-...
T Consensus 330 LhakT~eli~s~K----ieG~v~~~~fsSdsk~l~~~~~~------------GeV~v~nl~~~~~~~rf~--D~G~v~gt 391 (514)
T KOG2055|consen 330 LHAKTKELITSFK----IEGVVSDFTFSSDSKELLASGGT------------GEVYVWNLRQNSCLHRFV--DDGSVHGT 391 (514)
T ss_pred ehhhhhhhhheee----eccEEeeEEEecCCcEEEEEcCC------------ceEEEEecCCcceEEEEe--ecCcccee
Confidence 8888888842 22 22233334444456789999994 468999998774333211 00111222
Q ss_pred eeEEeeCCEEEEEec
Q 010011 194 HTCSSWKNKIIVIGG 208 (520)
Q Consensus 194 h~~~~~~~~lyv~GG 208 (520)
+.|...++.++..|-
T Consensus 392 s~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 392 SLCISLNGSYLATGS 406 (514)
T ss_pred eeeecCCCceEEecc
Confidence 334445677555554
No 74
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.04 E-value=14 Score=39.33 Aligned_cols=149 Identities=11% Similarity=0.103 Sum_probs=78.8
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEEC-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p 188 (520)
..+|++|+.+.+-+.+. ..+.... ......+ +.|++..... + ..++|++|+.+.+.+.+.....
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~-~~~wSPDG~~La~~~~~~------g---~~~Iy~~dl~tg~~~~lt~~~~-- 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGING-APRFSPDGKKLALVLSKD------G---QPEIYVVDIATKALTRITRHRA-- 306 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcC-CeeECCCCCEEEEEEeCC------C---CeEEEEEECCCCCeEECccCCC--
Confidence 57999999887765554 2221111 1122223 4565543311 1 2579999999998888753211
Q ss_pred CCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccC
Q 010011 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (520)
Q Consensus 189 ~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 268 (520)
.........+++.+++...... ..++|.+|+++.+++.+...+.. ....+..-+++.+++.+.... ..
T Consensus 307 --~~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~g---~~ 374 (448)
T PRK04792 307 --IDTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTNG---KF 374 (448)
T ss_pred --CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecCC---ce
Confidence 1111112224443333332221 24799999999999887532211 111123334443334333221 24
Q ss_pred cEEEEecCCCcEEEeee
Q 010011 269 DLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 269 dv~~yd~~~~~W~~l~~ 285 (520)
.++++|+.++....+..
T Consensus 375 ~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 375 NIARQDLETGAMQVLTS 391 (448)
T ss_pred EEEEEECCCCCeEEccC
Confidence 69999999998877653
No 75
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.02 E-value=15 Score=39.59 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=61.1
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccC-CCCCC-CCcceEEEEC-CEEEEEcCCCCCCCCCcEEEEEC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG-SPPTP-RDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g-~~P~~-R~~hs~~~~~-~~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
++.||+.... ..++.+|..++ .|+.-...+ ....+ -.....+..+ ++||+... ...++.+|.
T Consensus 61 ~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~AlD~ 127 (488)
T cd00216 61 DGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLVALDA 127 (488)
T ss_pred CCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEEEEEC
Confidence 5567775432 45899998875 488632111 00001 1112234446 78887532 247899999
Q ss_pred CCCe--EEeecccCCC-CCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcc
Q 010011 118 SSHT--WISPSVRGEG-PEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRAT 182 (520)
Q Consensus 118 ~t~~--W~~~~~~g~~-p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~ 182 (520)
.|.+ |+.-.. ... +......+.++.++.+|+ |...... ........++.||..+. .|+.-.
T Consensus 128 ~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~--~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 128 ETGKQVWKFGNN-DQVPPGYTMTGAPTIVKKLVII-GSSGAEF--FACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCCEeeeecCC-CCcCcceEecCCCEEECCEEEE-ecccccc--ccCCCCcEEEEEECCCCceeeEeec
Confidence 8755 875321 110 000012233445566554 4321100 00112457899999764 587543
No 76
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=92.60 E-value=9.3 Score=37.07 Aligned_cols=260 Identities=17% Similarity=0.228 Sum_probs=114.4
Q ss_pred CCEEEE--EcCcCCCCCCcCeEEEEECCC-CeEEeeeccCC----CC-CCCCcceEEEECCEEEEEcCC--CCCCCCCcE
Q 010011 43 GRFLYV--FGGYGKDNCQTNQVHVFDTVN-QTWSQPVIKGS----PP-TPRDSHSCTTVGENLYVFGGT--DGMNPLRDL 112 (520)
Q Consensus 43 g~~Iyi--~GG~~~~~~~~~~~~~yd~~t-~~W~~l~~~g~----~P-~~R~~hs~~~~~~~iyv~GG~--~~~~~~~~~ 112 (520)
++.||. ++|...+...+.-.|+-.... ++|..++...+ -| ..-.+.++..++++||.+=-. -....+...
T Consensus 25 ~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~ 104 (367)
T PF12217_consen 25 DNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRA 104 (367)
T ss_dssp TTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEE
T ss_pred cCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhh
Confidence 345553 455444433455567666544 68997653222 12 234566778899999987422 122345556
Q ss_pred EEEE---CCCCeEEeecccCCCCC-------CCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEE-----cCcce
Q 010011 113 HILD---TSSHTWISPSVRGEGPE-------AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILN-----TETFV 177 (520)
Q Consensus 113 ~~yd---~~t~~W~~~~~~g~~p~-------~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d-----~~t~~ 177 (520)
+.|| ...+.|+..+.. ..|. ...-|+.+.+++.-|.+|=...+ -...-. .+..|. +....
T Consensus 105 ~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD---~sPRe~-G~~yfs~~~~sp~~~v 179 (367)
T PF12217_consen 105 ELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD---VSPREL-GFLYFSDAFASPGVFV 179 (367)
T ss_dssp EEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-S---SSS-EE-EEEEETTTTT-TT--E
T ss_pred hhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCC---CCccee-eEEEecccccCCccee
Confidence 6666 457789765432 2222 44568888888877776532111 111111 122221 11122
Q ss_pred EEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeE---EEEECCEE
Q 010011 178 WKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS---TVAFGKNL 254 (520)
Q Consensus 178 W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs---~~~~~~~i 254 (520)
=+.+.. .....-...++-++++.||+.--.......-..+.+-+.....|..+.. | ....|+ .+..+|.|
T Consensus 180 rr~i~s--ey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf----p-~nvHhtnlPFakvgD~l 252 (367)
T PF12217_consen 180 RRIIPS--EYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF----P-NNVHHTNLPFAKVGDVL 252 (367)
T ss_dssp EEE--G--GG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----T-T---SS---EEEETTEE
T ss_pred eeechh--hhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc----c-ccccccCCCceeeCCEE
Confidence 222321 1112222334456799999875332222244567788888889999975 2 222333 56789999
Q ss_pred EEEecccCCCC------------ccCcEEEE-------ecCCCcEEEeeeC---CCCCCCceeeeeeeeccccCCEE-EE
Q 010011 255 FVFGGFTDSQN------------LYDDLYMI-------DVDSGLWTKVITT---GEGPSARFSVAGDCLDPLKGGVL-VF 311 (520)
Q Consensus 255 yv~GG~~~~~~------------~~~dv~~y-------d~~~~~W~~l~~~---~~~p~~r~~~~~~~~~~~~~~~l-~v 311 (520)
|+||--...++ .....+.. .++.-+|..+... +..-....+..++|+ .++.| |+
T Consensus 253 ~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~---KD~~lyy~ 329 (367)
T PF12217_consen 253 YMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVV---KDGWLYYI 329 (367)
T ss_dssp EEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEE---ETTEEEEE
T ss_pred EEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEE---ECCEEEEE
Confidence 99996432111 11112222 4455567776542 233333444555554 56665 57
Q ss_pred EcccCC
Q 010011 312 IGGCNK 317 (520)
Q Consensus 312 ~GG~~~ 317 (520)
|||.+.
T Consensus 330 FGgED~ 335 (367)
T PF12217_consen 330 FGGEDF 335 (367)
T ss_dssp EEEB-S
T ss_pred ecCccc
Confidence 898764
No 77
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.49 E-value=19 Score=39.33 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=104.4
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccC-CC-C---CCCCcceEEEECCEEEEEcCCCCCCCCCcEEEE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG-SP-P---TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g-~~-P---~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~y 115 (520)
++.||+.... ..++.+|..++ .|+.-.... .. + ......+.+..+++||+... -..++++
T Consensus 69 ~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l~AL 135 (527)
T TIGR03075 69 DGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARLVAL 135 (527)
T ss_pred CCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEEEEE
Confidence 5578875432 35899998875 588622100 00 0 11122334566888887432 2469999
Q ss_pred ECCCCe--EEeecccCCCCCC-CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCC---
Q 010011 116 DTSSHT--WISPSVRGEGPEA-REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNP--- 187 (520)
Q Consensus 116 d~~t~~--W~~~~~~g~~p~~-r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~--- 187 (520)
|..|.+ |+... ...... ....+-++.++.+|+-.... .......++.||.++. .|+.-......
T Consensus 136 Da~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~------~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 136 DAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITGISGG------EFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred ECCCCCEEeeccc--ccccccccccCCcEEECCEEEEeeccc------ccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 998865 76432 111111 11223455677777643211 1112356888998875 46644321110
Q ss_pred ----------C---------CCCcc----eeEEee--CCEEEEEecC----C-----CCCcccCceEEEECCCCc--EEE
Q 010011 188 ----------P---------SARDS----HTCSSW--KNKIIVIGGE----D-----GHDYYLSDVHILDTDTLT--WKE 231 (520)
Q Consensus 188 ----------p---------~~r~~----h~~~~~--~~~lyv~GG~----~-----~~~~~~~~i~~yd~~t~~--W~~ 231 (520)
+ ..+.+ .++++- .+.+|+=-|. . +++.+.+.+..+|++|.+ |..
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 00101 012222 3456654443 1 234567889999999876 664
Q ss_pred eeCCCCCCCC--CceeEEEE--ECCE---EEEEecccCCCCccCcEEEEecCCCc
Q 010011 232 LNTSGMVLSP--RAGHSTVA--FGKN---LFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 232 ~~~~~~~p~~--R~~hs~~~--~~~~---iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
-....+.-.- -....++- .+++ +++.+..++ .+|++|.++++
T Consensus 288 Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G------~~~vlDr~tG~ 336 (527)
T TIGR03075 288 QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG------FFYVLDRTNGK 336 (527)
T ss_pred eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc------eEEEEECCCCc
Confidence 3321111000 00111222 2443 777776543 48888888765
No 78
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.29 E-value=3.4 Score=35.72 Aligned_cols=85 Identities=9% Similarity=0.114 Sum_probs=55.7
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEE-ecCC
Q 010011 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMI-DVDS 277 (520)
Q Consensus 199 ~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~y-d~~~ 277 (520)
++|-+|-..-. .......|..||..+++|+.+..+............+.++++|-++.-........=++|++ |.++
T Consensus 4 inGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 4 INGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred ECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 46666665544 11234679999999999999986311234455666778888887766544322223568888 4667
Q ss_pred CcEEEeee
Q 010011 278 GLWTKVIT 285 (520)
Q Consensus 278 ~~W~~l~~ 285 (520)
.+|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 79998754
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.08 E-value=12 Score=36.71 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=92.1
Q ss_pred ECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 93 VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 93 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
.++.+|.--|..+. +.+..+|+.+++-.... ++|..-++=+++.++++||..==. ....++||
T Consensus 54 ~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk-----------~~~~f~yd 116 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ---SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK-----------EGTGFVYD 116 (264)
T ss_dssp ETTEEEEEECSTTE---EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS-----------SSEEEEEE
T ss_pred CCCEEEEeCCCCCc---EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec-----------CCeEEEEc
Confidence 47889998887654 46889999998865544 577777888999999999998442 35578999
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEE-eeCCC-CCCCCCceeEEEEE
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTSG-MVLSPRAGHSTVAF 250 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-~~~~~-~~p~~R~~hs~~~~ 250 (520)
..+.+ .+. ..+.+..+..++..+..|++--|. +.++.+||++.+-.. +.... ..|.. .---.-.+
T Consensus 117 ~~tl~--~~~---~~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~~f~~~~~i~V~~~g~pv~-~LNELE~i 183 (264)
T PF05096_consen 117 PNTLK--KIG---TFPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPETFKEVRTIQVTDNGRPVS-NLNELEYI 183 (264)
T ss_dssp TTTTE--EEE---EEE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEE
T ss_pred cccce--EEE---EEecCCcceEEEcCCCEEEEECCc-------cceEEECCcccceEEEEEEEECCEECC-CcEeEEEE
Confidence 87653 232 123345777888778888888763 568999998765332 22110 01111 11112234
Q ss_pred CCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
++.||. +--..+.|.+.|++++.-...
T Consensus 184 ~G~IyA------NVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 184 NGKIYA------NVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp TTEEEE------EETTSSEEEEEETTT-BEEEE
T ss_pred cCEEEE------EeCCCCeEEEEeCCCCeEEEE
Confidence 555443 112346799999999975544
No 80
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.00 E-value=17 Score=37.81 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=78.4
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCce
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (520)
..++++|+.++....+. ..+..........-+..|++....++ ..++|.+|+.+...+.+..... .. ...
T Consensus 214 ~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~---~~-~~~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPG---ID-TEP 283 (417)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCC---CC-CCE
Confidence 56899999888766643 12111111111112345665543221 2579999999887766542111 10 111
Q ss_pred EEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeE-EeeCCEEEEEecCCCCCcccC
Q 010011 140 AALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC-SSWKNKIIVIGGEDGHDYYLS 217 (520)
Q Consensus 140 ~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~-~~~~~~lyv~GG~~~~~~~~~ 217 (520)
....++ +|++..... . ...+|++|+.+..++.+...+. ..... ...+++.+++...... ..
T Consensus 284 ~~s~dg~~l~~~s~~~------g---~~~iy~~d~~~~~~~~l~~~~~-----~~~~~~~spdg~~i~~~~~~~~---~~ 346 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRG------G---SPQIYMMDADGGEVRRLTFRGG-----YNASPSWSPDGDLIAFVHREGG---GF 346 (417)
T ss_pred EECCCCCEEEEEECCC------C---CceEEEEECCCCCEEEeecCCC-----CccCeEECCCCCEEEEEEccCC---ce
Confidence 112234 454443311 1 2478999998888887753221 11222 2235566666554332 24
Q ss_pred ceEEEECCCCcEEEeeC
Q 010011 218 DVHILDTDTLTWKELNT 234 (520)
Q Consensus 218 ~i~~yd~~t~~W~~~~~ 234 (520)
.++.+|+.+..++.+..
T Consensus 347 ~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 347 NIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEEEeCCCCCeEEccC
Confidence 68999999877776653
No 81
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.92 E-value=19 Score=38.10 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=99.6
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
+++++|+.. .+... ...++++|..+++-..+. ..+..-.......-+.+|++....++ ..++|++|+.+.
T Consensus 213 pDg~~la~~-s~~~~---~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g 282 (433)
T PRK04922 213 PDGKKLAYV-SFERG---RSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSR 282 (433)
T ss_pred CCCCEEEEE-ecCCC---CcEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCC---CceEEEEECCCC
Confidence 456655543 32221 256999999888877654 22211111111112445655432222 257999999988
Q ss_pred eEEeecccCCCCCCCCCceEEEECCE-EEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee
Q 010011 121 TWISPSVRGEGPEAREGHSAALVGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (520)
Q Consensus 121 ~W~~~~~~g~~p~~r~~hs~~~~~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~ 199 (520)
..+++... .. .........+++ |++..... + ...+|.+|..+.+++.+...+... ...+....
T Consensus 283 ~~~~lt~~---~~-~~~~~~~spDG~~l~f~sd~~------g---~~~iy~~dl~~g~~~~lt~~g~~~---~~~~~SpD 346 (433)
T PRK04922 283 QLTRLTNH---FG-IDTEPTWAPDGKSIYFTSDRG------G---RPQIYRVAASGGSAERLTFQGNYN---ARASVSPD 346 (433)
T ss_pred CeEECccC---CC-CccceEECCCCCEEEEEECCC------C---CceEEEEECCCCCeEEeecCCCCc---cCEEECCC
Confidence 77655421 11 111112222444 44433211 1 246899999888888775322111 11112122
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
++.|++..+.+ . ...++.+|+.+...+.+.... ........-+++.+++...... ...++.+|+....
T Consensus 347 G~~Ia~~~~~~-~---~~~I~v~d~~~g~~~~Lt~~~-----~~~~p~~spdG~~i~~~s~~~g---~~~L~~~~~~g~~ 414 (433)
T PRK04922 347 GKKIAMVHGSG-G---QYRIAVMDLSTGSVRTLTPGS-----LDESPSFAPNGSMVLYATREGG---RGVLAAVSTDGRV 414 (433)
T ss_pred CCEEEEEECCC-C---ceeEEEEECCCCCeEECCCCC-----CCCCceECCCCCEEEEEEecCC---ceEEEEEECCCCc
Confidence 44555544422 1 136899999988888665311 1111133345555555443221 2458888886543
No 82
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.77 E-value=19 Score=37.72 Aligned_cols=189 Identities=14% Similarity=0.084 Sum_probs=98.8
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCC------CCcEEEEECCCCeEEeecccCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNP------LRDLHILDTSSHTWISPSVRGEGP 132 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~------~~~~~~yd~~t~~W~~~~~~g~~p 132 (520)
..++++|+.+++...- .++.+.... ++-. +++.+++...+.... -..++++.+.+..-.-..+- ..+
T Consensus 150 ~~l~v~Dl~tg~~l~d----~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf-e~~ 223 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPD----GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF-EEP 223 (414)
T ss_dssp EEEEEEETTTTEEEEE----EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE-C-T
T ss_pred EEEEEEECCCCcCcCC----cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE-eec
Confidence 5689999999965541 112222222 3333 335555555544322 56889888877653311111 112
Q ss_pred CCCC-CceE-EEECCE-EEEEeCCCCCCCCCCcceeceeEEEEcCcc-----eEEEcccCCCCCCCCcceeEEeeCCEEE
Q 010011 133 EARE-GHSA-ALVGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF-----VWKRATTSGNPPSARDSHTCSSWKNKII 204 (520)
Q Consensus 133 ~~r~-~hs~-~~~~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~-----~W~~v~~~~~~p~~r~~h~~~~~~~~ly 204 (520)
...+ ...+ ...+++ |+|.-.. ... .+++|.++.... .|+.+.. +..-..+.+...++.+|
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~-------~~~-~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~y 291 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSS-------GTS-ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLY 291 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEES-------SSS-EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEE
T ss_pred CCCcEEEEEEecCcccEEEEEEEc-------ccc-CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEE
Confidence 2222 2222 222333 4443331 111 488999999875 8888862 22222333444588999
Q ss_pred EEecCCCCCcccCceEEEECCCCc---EEEeeCCCCCCCC-CceeEEEEECCEEEEEecccCCCCccCcEEEEecC
Q 010011 205 VIGGEDGHDYYLSDVHILDTDTLT---WKELNTSGMVLSP-RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (520)
Q Consensus 205 v~GG~~~~~~~~~~i~~yd~~t~~---W~~~~~~~~~p~~-R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (520)
+.-..+. ....+..+++.... |..+-. .+.. ..--.+...++.|++.-=.+ ....|.++|+.
T Consensus 292 i~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~ 357 (414)
T PF02897_consen 292 ILTNDDA---PNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLD 357 (414)
T ss_dssp EEE-TT----TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT
T ss_pred EeeCCCC---CCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECC
Confidence 8876333 34678888887665 774332 2222 23344556688877765432 24569999988
No 83
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.77 E-value=13 Score=36.00 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=88.4
Q ss_pred EEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEE
Q 010011 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (520)
Q Consensus 46 Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 123 (520)
+|+.++.+ +.+.+||+.+++-...-..+. .++ +++.. +..+|+.++. .+.+.+||+.+.+..
T Consensus 3 ~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~--~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 3 AYVSNEKD------NTISVIDTATLEVTRTFPVGQ--RPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVI 66 (300)
T ss_pred EEEEecCC------CEEEEEECCCCceEEEEECCC--CCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEE
Confidence 66666532 468889988776443221111 112 22222 3457777653 246889999887764
Q ss_pred eecccCCCCCCCCCceEEEE-C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE-EEcccCCCCCCCCcceeEEe-e
Q 010011 124 SPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSARDSHTCSS-W 199 (520)
Q Consensus 124 ~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W-~~v~~~~~~p~~r~~h~~~~-~ 199 (520)
..-. ....+ ..++.. + +.+|+.++. ...+.++|+.+.+- ..+.. ....++++. .
T Consensus 67 ~~~~--~~~~~---~~~~~~~~g~~l~~~~~~-----------~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~ 124 (300)
T TIGR03866 67 GTLP--SGPDP---ELFALHPNGKILYIANED-----------DNLVTVIDIETRKVLAEIPV------GVEPEGMAVSP 124 (300)
T ss_pred Eecc--CCCCc---cEEEECCCCCEEEEEcCC-----------CCeEEEEECCCCeEEeEeeC------CCCcceEEECC
Confidence 3211 11111 122222 3 456665441 24588889876542 22211 111122332 3
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
++.+++++..+. +.++.||..+..-......+ .+..+.+...+++.+++++..+ +.+.+||+++.+
T Consensus 125 dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~-----~~v~i~d~~~~~ 190 (300)
T TIGR03866 125 DGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVD----QRPRFAEFTADGKELWVSSEIG-----GTVSVIDVATRK 190 (300)
T ss_pred CCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcC----CCccEEEECCCCCEEEEEcCCC-----CEEEEEEcCcce
Confidence 666676665432 23566787765433211111 1112223333455444454322 348999998765
Q ss_pred E
Q 010011 280 W 280 (520)
Q Consensus 280 W 280 (520)
.
T Consensus 191 ~ 191 (300)
T TIGR03866 191 V 191 (300)
T ss_pred e
Confidence 4
No 84
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.57 E-value=21 Score=37.79 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=82.4
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p 188 (520)
.++|++|+.+++=+.+.. .+. .........++ +|++.-... -..++|.+|+.+..++++... +
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~dl~~g~~~~LT~~---~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPK---------GQPDIYLYDTNTKTLTQITNY---P 276 (419)
T ss_pred CEEEEEECCCCcEEEEec---CCC-cEEeeEECCCCCEEEEEEccC---------CCcEEEEEECCCCcEEEcccC---C
Confidence 379999998876655541 111 11111222333 555443311 136899999999999988632 1
Q ss_pred CCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCE-EEEEecccCCC--
Q 010011 189 SARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKN-LFVFGGFTDSQ-- 264 (520)
Q Consensus 189 ~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~-iyv~GG~~~~~-- 264 (520)
. ........- +.+|++.-...+ ..+++.+|..+...+.+...+. .. ....-+++ |.+........
T Consensus 277 ~-~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 277 G-IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred C-ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cC-ceECCCCCEEEEEEcCCCcccC
Confidence 1 111111222 445666543322 2579999999998877754221 11 23333444 44433322111
Q ss_pred CccCcEEEEecCCCcEEEeeeC
Q 010011 265 NLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 265 ~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
....+++++|++++.++.|...
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCC
Confidence 1235799999999999888653
No 85
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.94 E-value=16 Score=35.22 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=100.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
++.||+..- .-..++++|+.+.+-..... +. -.+++.. ++++|+... ..+.++
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~-------------~~~~~~ 65 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS-------------GGIAVV 65 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET-------------TCEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc-------------CceEEE
Confidence 467777632 23579999999988765542 22 2344444 678888765 234666
Q ss_pred EcCcceEEEcccC--CCCCCCCcceeEEeeCCEEEEEecCCCCCccc--CceEEEECCCCcEEEeeCCCCCCCCCceeEE
Q 010011 172 NTETFVWKRATTS--GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYL--SDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (520)
Q Consensus 172 d~~t~~W~~v~~~--~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~--~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~ 247 (520)
|+.+.+++.+... +..+..+..-.++.-++.||+-.-........ ..++++++. .+.+.+... ..+ -..+
T Consensus 66 d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~----~~~-pNGi 139 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG----LGF-PNGI 139 (246)
T ss_dssp ETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE----ESS-EEEE
T ss_pred ecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC----ccc-ccce
Confidence 9999999888643 11123333333344477888754322211112 569999998 666665431 111 1233
Q ss_pred EEE-C-CEEEEEecccCCCCccCcEEEEecCCCc--EEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccC
Q 010011 248 VAF-G-KNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALD 323 (520)
Q Consensus 248 ~~~-~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 323 (520)
+.. + +.+|+.--. ...|++|++.... +.........+......-+.+++ .++.||+..- .-+
T Consensus 140 ~~s~dg~~lyv~ds~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD--~~G~l~va~~------~~~ 205 (246)
T PF08450_consen 140 AFSPDGKTLYVADSF------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD--SDGNLWVADW------GGG 205 (246)
T ss_dssp EEETTSSEEEEEETT------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB--TTS-EEEEEE------TTT
T ss_pred EECCcchheeecccc------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc--CCCCEEEEEc------CCC
Confidence 333 3 356664322 3459999986433 44322111111111123344443 4677887621 112
Q ss_pred ceEeeecc
Q 010011 324 DMYYLYTG 331 (520)
Q Consensus 324 dv~~l~~~ 331 (520)
.+++++.+
T Consensus 206 ~I~~~~p~ 213 (246)
T PF08450_consen 206 RIVVFDPD 213 (246)
T ss_dssp EEEEEETT
T ss_pred EEEEECCC
Confidence 46666644
No 86
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.76 E-value=25 Score=37.21 Aligned_cols=190 Identities=12% Similarity=0.097 Sum_probs=100.9
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCc
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (520)
.++|++|+.+++=+.+.. .+. ........- +.+|++.-..++ ..++|.+|+.+..++++.. .+. ....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~---~~~-~d~~ 281 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITN---YPG-IDVN 281 (419)
T ss_pred CEEEEEECCCCcEEEEec---CCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEccc---CCC-ccCc
Confidence 479999999887666641 111 111111222 345555433322 3589999999999887752 221 1111
Q ss_pred eEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCc---
Q 010011 139 SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDY--- 214 (520)
Q Consensus 139 s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~--- 214 (520)
..... +.+|++..... -..++|++|+.+...+++...+. ... ....+++.+++-.......
T Consensus 282 p~~SPDG~~I~F~Sdr~---------g~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRL---------GYPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred cEECCCCCEEEEEECCC---------CCceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCC
Confidence 12222 34666664421 13589999999999888764322 112 2233444334433322111
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
...+++.+|+++..++.+...+ ....-...-+++.++|-.... -...++.+++..+.=..+
T Consensus 347 ~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~---~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 347 NTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG---NQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC---CcEEEEEEecCCCeeEEe
Confidence 1257999999999998886522 122223333454443332221 124588888776544444
No 87
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.58 E-value=18 Score=35.35 Aligned_cols=187 Identities=18% Similarity=0.193 Sum_probs=102.0
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEEC-----CCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEEC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDT-----VNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~-----~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
.++||++.|.... .++.|.. ..+...+. -.+|.+-.+-+.++.++.+|.--. ..+.+.+||+
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~---~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRT---YKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceE---EEEeceeccCCeEEECCcEEEEec-----CCceEEEEEC
Confidence 4578888876432 4555532 22222221 145677788888889998887643 4678999999
Q ss_pred CCCeEE-e--ecccCC---CCCCCCCc---eEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCc----ceEEEcccC
Q 010011 118 SSHTWI-S--PSVRGE---GPEAREGH---SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET----FVWKRATTS 184 (520)
Q Consensus 118 ~t~~W~-~--~~~~g~---~p~~r~~h---s~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t----~~W~~v~~~ 184 (520)
.+.+-. . ++-.+. .|-...++ -.++.++-|+|+=..... .+ .-.+-++|+.+ .+|..-
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---~g---~ivvskld~~tL~v~~tw~T~--- 167 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---NG---NIVVSKLDPETLSVEQTWNTS--- 167 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---CC---cEEEEeeCcccCceEEEEEec---
Confidence 988755 3 321111 11111111 223334567777553211 11 12344556654 355421
Q ss_pred CCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE---CCEEEEEe
Q 010011 185 GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFG 258 (520)
Q Consensus 185 ~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~---~~~iyv~G 258 (520)
.+. +....+.++.+.||++...+... ..-.+.||+.+++=..+.. ..+.+-..++++.. +.+||+.-
T Consensus 168 --~~k-~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 168 --YPK-RSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred --cCc-hhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 222 23333556678899987765443 3446889999887665553 12223334555554 35677764
No 88
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.55 E-value=18 Score=35.33 Aligned_cols=193 Identities=15% Similarity=0.092 Sum_probs=102.5
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECC-----CCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceecee
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTS-----SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDL 168 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~-----t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v 168 (520)
.+++|++.|..+. .++.|... .+.+...- .+|.+-.|.+.++.++.+|.--. -.+.|
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~-----------~s~~I 91 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY-----------NSRNI 91 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec-----------CCceE
Confidence 4678888886544 44544321 22222111 36677778888889998887533 25789
Q ss_pred EEEEcCcceEE---EcccCCC---CCCCCccee---EEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCC
Q 010011 169 YILNTETFVWK---RATTSGN---PPSARDSHT---CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 239 (520)
Q Consensus 169 ~~~d~~t~~W~---~v~~~~~---~p~~r~~h~---~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p 239 (520)
.+||+.+..-. .++..+. .|....+++ .++-++-|+|+=...... -.--+-.+|+++..-++.=.+. .+
T Consensus 92 vkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T~-~~ 169 (250)
T PF02191_consen 92 VKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNTS-YP 169 (250)
T ss_pred EEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEec-cC
Confidence 99999887644 4432111 122222232 233456677665433221 0122455677655433222111 22
Q ss_pred CCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEE
Q 010011 240 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (520)
Q Consensus 240 ~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~ 312 (520)
.+..+ .+.++-+.+|++....... ..=.+.||+.+++=..+... .+. ++.....+-....+.+||+.
T Consensus 170 k~~~~-naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~--f~~-~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 170 KRSAG-NAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIP--FPN-PYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred chhhc-ceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceeee--ecc-ccCceEeeeECCCCCeEEEE
Confidence 32233 3666778888888775432 22258999998875544321 222 22223333334567788875
No 89
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.45 E-value=19 Score=35.37 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=90.2
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
++.+|.--|... .+.+..+|+.+++-.+.. ++|..-.+=+++.++++||..-=. ....++||..+-+=
T Consensus 55 ~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 55 DGTLYESTGLYG----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNTLKK 122 (264)
T ss_dssp TTEEEEEECSTT----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTTTEE
T ss_pred CCEEEEeCCCCC----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec-----CCeEEEEccccceE
Confidence 345655444322 256899999998766532 677778889999999999998643 35689999987532
Q ss_pred EeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE-cccC-CCCCCCCcceeEEeeC
Q 010011 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTS-GNPPSARDSHTCSSWK 200 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~-v~~~-~~~p~~r~~h~~~~~~ 200 (520)
+. ..+.+..+-+++..++.|++--| .+.++.+|+++.+-.. +... ...|.. .---+-.++
T Consensus 123 --~~---~~~y~~EGWGLt~dg~~Li~SDG------------S~~L~~~dP~~f~~~~~i~V~~~g~pv~-~LNELE~i~ 184 (264)
T PF05096_consen 123 --IG---TFPYPGEGWGLTSDGKRLIMSDG------------SSRLYFLDPETFKEVRTIQVTDNGRPVS-NLNELEYIN 184 (264)
T ss_dssp --EE---EEE-SSS--EEEECSSCEEEE-S------------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEET
T ss_pred --EE---EEecCCcceEEEcCCCEEEEECC------------ccceEEECCcccceEEEEEEEECCEECC-CcEeEEEEc
Confidence 22 23344588889988899999888 5778999998764332 2211 011111 111233345
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
+.||.== -..+.|.+.||++++-...
T Consensus 185 G~IyANV------W~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 185 GKIYANV------WQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp TEEEEEE------TTSSEEEEEETTT-BEEEE
T ss_pred CEEEEEe------CCCCeEEEEeCCCCeEEEE
Confidence 5555421 1346688999999886554
No 90
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.31 E-value=21 Score=35.56 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=69.6
Q ss_pred cCeEEEEECCCCe----EEeeeccCCCCCCCCcceEEE----ECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCC
Q 010011 59 TNQVHVFDTVNQT----WSQPVIKGSPPTPRDSHSCTT----VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGE 130 (520)
Q Consensus 59 ~~~~~~yd~~t~~----W~~l~~~g~~P~~R~~hs~~~----~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~ 130 (520)
.+.++.||..+.+ |+. .-.-+..-++-..-. ++++|++.=+ ++. ..--+|..|..+..-+++. +
T Consensus 77 YSHVH~yd~e~~~VrLLWke---sih~~~~WaGEVSdIlYdP~~D~LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~---~ 148 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKE---SIHDKTKWAGEVSDILYDPYEDRLLLARA-DGH-ANLGVYSLDRRTGKAEKLS---S 148 (339)
T ss_pred cceEEEEEcCCCeEEEEEec---ccCCccccccchhheeeCCCcCEEEEEec-CCc-ceeeeEEEcccCCceeecc---C
Confidence 4679999998875 766 112222222211111 2567777643 222 2235888888888877765 2
Q ss_pred CCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE--EEccc----CCCCCCCCcceeEEeeCCEEE
Q 010011 131 GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW--KRATT----SGNPPSARDSHTCSSWKNKII 204 (520)
Q Consensus 131 ~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W--~~v~~----~~~~p~~r~~h~~~~~~~~ly 204 (520)
.|.+ -.+...+..+|-+ + +-..-...++++|+.+.+| +.... .+.....|....++...+++|
T Consensus 149 ~ps~---KG~~~~D~a~F~i----~----~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~f 217 (339)
T PF09910_consen 149 NPSL---KGTLVHDYACFGI----N----NFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLF 217 (339)
T ss_pred CCCc---CceEeeeeEEEec----c----ccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEE
Confidence 2322 2233333333322 1 1111257899999999999 43321 223334445556666777777
Q ss_pred EE
Q 010011 205 VI 206 (520)
Q Consensus 205 v~ 206 (520)
.|
T Consensus 218 aF 219 (339)
T PF09910_consen 218 AF 219 (339)
T ss_pred EE
Confidence 66
No 91
>PRK00178 tolB translocation protein TolB; Provisional
Probab=90.26 E-value=27 Score=36.81 Aligned_cols=147 Identities=10% Similarity=0.097 Sum_probs=77.8
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p 188 (520)
..+|++|+.+++-+.+.. .+.. ........++ +|++.... .+ ..++|++|+.+...+.+... +
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g~-~~~~~~SpDG~~la~~~~~------~g---~~~Iy~~d~~~~~~~~lt~~---~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEGL-NGAPAWSPDGSKLAFVLSK------DG---NPEIYVMDLASRQLSRVTNH---P 286 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCCC-cCCeEECCCCCEEEEEEcc------CC---CceEEEEECCCCCeEEcccC---C
Confidence 479999999887766542 1111 1111222233 45443221 01 25799999999988877532 1
Q ss_pred CCCcceeEEeeCC-EEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEEC-CEEEEEecccCCCCc
Q 010011 189 SARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNL 266 (520)
Q Consensus 189 ~~r~~h~~~~~~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~-~~iyv~GG~~~~~~~ 266 (520)
. .........++ .|++.....+ ..+++.+|+.+..++.+...+ .........-+ +.|++... .+.
T Consensus 287 ~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~-~~~--- 353 (430)
T PRK00178 287 A-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHR-QDG--- 353 (430)
T ss_pred C-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEc-cCC---
Confidence 1 11111122244 4544432221 246999999998888775321 11111222233 44544432 221
Q ss_pred cCcEEEEecCCCcEEEeee
Q 010011 267 YDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 267 ~~dv~~yd~~~~~W~~l~~ 285 (520)
..+++++|+.++.++.+..
T Consensus 354 ~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ceEEEEEECCCCCEEEccC
Confidence 2359999999998887754
No 92
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.61 E-value=18 Score=33.89 Aligned_cols=185 Identities=12% Similarity=0.102 Sum_probs=81.3
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEE
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 123 (520)
.++++|+. ...+.+||..++.-.... .+. .... ..+... +++.+++++.+ ..+.+||..+....
T Consensus 22 ~~l~~~~~------~g~i~i~~~~~~~~~~~~-~~~--~~~i-~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~ 86 (289)
T cd00200 22 KLLATGSG------DGTIKVWDLETGELLRTL-KGH--TGPV-RDVAASADGTYLASGSSD-----KTIRLWDLETGECV 86 (289)
T ss_pred CEEEEeec------CcEEEEEEeeCCCcEEEE-ecC--Ccce-eEEEECCCCCEEEEEcCC-----CeEEEEEcCcccce
Confidence 35566653 245778887766422211 111 1111 122222 34456666542 46888888765322
Q ss_pred eecccCCCCCCCCCceEEEEC-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeC-C
Q 010011 124 SPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-N 201 (520)
Q Consensus 124 ~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~-~ 201 (520)
..- . .....-.++.... +.+++.|+. ...+.+||+.+.+....-. .....-.++.... +
T Consensus 87 ~~~---~-~~~~~i~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~ 147 (289)
T cd00200 87 RTL---T-GHTSYVSSVAFSPDGRILSSSSR-----------DKTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDG 147 (289)
T ss_pred EEE---e-ccCCcEEEEEEcCCCCEEEEecC-----------CCeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcC
Confidence 111 0 0011112223333 356665552 2457788887543322211 1111112233333 4
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcE-EEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 202 KIIVIGGEDGHDYYLSDVHILDTDTLTW-KELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W-~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.+++.|+.+ ..+..||+.+.+- ..+.. ....-.++... +++.+++++.. ..+.+||+.+..
T Consensus 148 ~~l~~~~~~------~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~ 210 (289)
T cd00200 148 TFVASSSQD------GTIKLWDLRTGKCVATLTG-----HTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLSTGK 210 (289)
T ss_pred CEEEEEcCC------CcEEEEEccccccceeEec-----CccccceEEECCCcCEEEEecCC------CcEEEEECCCCc
Confidence 555544422 3478888864332 12211 11111222223 33355666542 348899988754
Q ss_pred E
Q 010011 280 W 280 (520)
Q Consensus 280 W 280 (520)
.
T Consensus 211 ~ 211 (289)
T cd00200 211 C 211 (289)
T ss_pred e
Confidence 3
No 93
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.48 E-value=21 Score=34.37 Aligned_cols=202 Identities=12% Similarity=0.050 Sum_probs=104.8
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
++.||+.-- ....++++|+.+++-......+ ..+++.. ++++|+... ..+.++|+.+.
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG 70 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence 456777632 2357999999998877654211 3344444 678888764 34677799999
Q ss_pred eEEeeccc--CCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe
Q 010011 121 TWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (520)
Q Consensus 121 ~W~~~~~~--g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~ 198 (520)
+++.+... +..+..+..-.++.-+++||+---.... ........++++++. .+.+.+......| -.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~---~~~~~~g~v~~~~~~-~~~~~~~~~~~~p-----NGi~~ 141 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG---ASGIDPGSVYRIDPD-GKVTVVADGLGFP-----NGIAF 141 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC---TTCGGSEEEEEEETT-SEEEEEEEEESSE-----EEEEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc---cccccccceEEECCC-CeEEEEecCcccc-----cceEE
Confidence 99866532 1112333333334446777775221100 000001679999998 6655554221111 22333
Q ss_pred e--CCEEEEEecCCCCCcccCceEEEECC--CCcEEEeeCCCCCCCCC-ceeEEE-EECCEEEEEecccCCCCccCcEEE
Q 010011 199 W--KNKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVLSPR-AGHSTV-AFGKNLFVFGGFTDSQNLYDDLYM 272 (520)
Q Consensus 199 ~--~~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~~~~~~~~~p~~R-~~hs~~-~~~~~iyv~GG~~~~~~~~~dv~~ 272 (520)
- ++.||+.-- ..+.+++|++. +..+.........+... .--.++ --+++|||..-. .+.|++
T Consensus 142 s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~ 209 (246)
T PF08450_consen 142 SPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVV 209 (246)
T ss_dssp ETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEE
T ss_pred CCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEE
Confidence 2 446777432 34569999885 33344322110011111 112233 336788886321 234999
Q ss_pred EecCCCcEEEeee
Q 010011 273 IDVDSGLWTKVIT 285 (520)
Q Consensus 273 yd~~~~~W~~l~~ 285 (520)
||++...-..+..
T Consensus 210 ~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 210 FDPDGKLLREIEL 222 (246)
T ss_dssp EETTSCEEEEEE-
T ss_pred ECCCccEEEEEcC
Confidence 9999665555543
No 94
>PRK03629 tolB translocation protein TolB; Provisional
Probab=89.26 E-value=32 Score=36.36 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=77.6
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p 188 (520)
..++++|+.+++-+.+. ..+.. ........++ +|++..... + ..++|++|+++.+.+.+... .
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~-~~~~~~SPDG~~La~~~~~~------g---~~~I~~~d~~tg~~~~lt~~---~ 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRH-NGAPAFSPDGSKLAFALSKT------G---SLNLYVMDLASGQIRQVTDG---R 286 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCC-cCCeEECCCCCEEEEEEcCC------C---CcEEEEEECCCCCEEEccCC---C
Confidence 47899999887765544 12111 1111222244 455543210 1 23599999998888777532 1
Q ss_pred CCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccC
Q 010011 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (520)
Q Consensus 189 ~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 268 (520)
.. .......-+++.+++...... ..++|.+|+.+...+.+...+ .........-+++.+++.+.... ..
T Consensus 287 ~~-~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---~~ 355 (429)
T PRK03629 287 SN-NTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---QQ 355 (429)
T ss_pred CC-cCceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---Cc
Confidence 11 111112224554444432221 247899999888777664311 11112222334444444333221 24
Q ss_pred cEEEEecCCCcEEEeee
Q 010011 269 DLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 269 dv~~yd~~~~~W~~l~~ 285 (520)
+++++|++++.++.+..
T Consensus 356 ~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 356 HIAKQDLATGGVQVLTD 372 (429)
T ss_pred eEEEEECCCCCeEEeCC
Confidence 69999999999887764
No 95
>PRK04922 tolB translocation protein TolB; Provisional
Probab=88.78 E-value=35 Score=36.09 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=77.5
Q ss_pred CCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCC
Q 010011 109 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (520)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~ 187 (520)
...++++|+.+++-+.+. ..+.. ........++ +|++..... + ..++|++|+.+...+.+....
T Consensus 227 ~~~l~~~dl~~g~~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~------g---~~~Iy~~d~~~g~~~~lt~~~-- 291 (433)
T PRK04922 227 RSAIYVQDLATGQRELVA---SFRGI-NGAPSFSPDGRRLALTLSRD------G---NPEIYVMDLGSRQLTRLTNHF-- 291 (433)
T ss_pred CcEEEEEECCCCCEEEec---cCCCC-ccCceECCCCCEEEEEEeCC------C---CceEEEEECCCCCeEECccCC--
Confidence 357999999888776554 22211 1111222234 455433211 1 257999999988877765321
Q ss_pred CCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeE-EEEE-CCEEEEEecccCCCC
Q 010011 188 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAF-GKNLFVFGGFTDSQN 265 (520)
Q Consensus 188 p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs-~~~~-~~~iyv~GG~~~~~~ 265 (520)
. ........-+++.+++.....+ ..+++.+|..+.+++.+...+ ..... ...- ++.|++..+. + .
T Consensus 292 -~-~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~-~- 358 (433)
T PRK04922 292 -G-IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-G-G- 358 (433)
T ss_pred -C-CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-C-C-
Confidence 1 1111112224444444332211 246999999888888775422 11111 2222 3455554432 1 1
Q ss_pred ccCcEEEEecCCCcEEEeee
Q 010011 266 LYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~ 285 (520)
...++++|+.++....+..
T Consensus 359 -~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 -QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred -ceeEEEEECCCCCeEECCC
Confidence 1369999999988876643
No 96
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.78 E-value=40 Score=34.48 Aligned_cols=235 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred EEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEEC--CCCeEEee
Q 010011 48 VFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT--SSHTWISP 125 (520)
Q Consensus 48 i~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~--~t~~W~~~ 125 (520)
++|++.......=.++.||..+.++..+......+.|.+ .+...-++.||+..... .....+..|+. .+.+.+.+
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~-l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSW-LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECC-EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCce-EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEe
Confidence 457776532222234556668999998763211111111 11111356788886533 12344555554 44677665
Q ss_pred cccCCCCCCCCCceEEEE---CCEEEEEeCCCCCCCCCCcceeceeEEEEcCc-ceEEEcc------cCCCC---CCCCc
Q 010011 126 SVRGEGPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWKRAT------TSGNP---PSARD 192 (520)
Q Consensus 126 ~~~g~~p~~r~~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t-~~W~~v~------~~~~~---p~~r~ 192 (520)
.. .+..-...+.+.+ +..||+.- +. ...+.+|++.. ..-.... ..++. ...-.
T Consensus 80 ~~---~~~~g~~p~~i~~~~~g~~l~van-y~----------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h 145 (345)
T PF10282_consen 80 NS---VPSGGSSPCHIAVDPDGRFLYVAN-YG----------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH 145 (345)
T ss_dssp EE---EEESSSCEEEEEECTTSSEEEEEE-TT----------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred ee---eccCCCCcEEEEEecCCCEEEEEE-cc----------CCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence 52 2211112122233 34566642 11 23456666654 2222211 01111 12233
Q ss_pred ceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCCCCC-CceeEEEEE-CCEEEEEecccCCCCc
Q 010011 193 SHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSP-RAGHSTVAF-GKNLFVFGGFTDSQNL 266 (520)
Q Consensus 193 ~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~-R~~hs~~~~-~~~iyv~GG~~~~~~~ 266 (520)
.|.+... ++.+|+..= -.+.|+.|+..... ........ .+.. --.|.+..- +..+||..-..
T Consensus 146 ~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s----- 213 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELS----- 213 (345)
T ss_dssp EEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTT-----
T ss_pred ceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCC-----
Confidence 3554444 356776531 13568888876654 55533211 1111 112222222 35789987653
Q ss_pred cCcEEEEecC--CCcEEEeeeCCCCCC---CceeeeeeeeccccCCEEEEEc
Q 010011 267 YDDLYMIDVD--SGLWTKVITTGEGPS---ARFSVAGDCLDPLKGGVLVFIG 313 (520)
Q Consensus 267 ~~dv~~yd~~--~~~W~~l~~~~~~p~---~r~~~~~~~~~~~~~~~l~v~G 313 (520)
+.|.+|+.. +..++.+......|. .... ++.+.....+..||+.-
T Consensus 214 -~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 214 -NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA-PAEIAISPDGRFLYVSN 263 (345)
T ss_dssp -TEEEEEEEETTTTEEEEEEEEESCETTSCSSSS-EEEEEE-TTSSEEEEEE
T ss_pred -CcEEEEeecccCCceeEEEEeeeccccccccCC-ceeEEEecCCCEEEEEe
Confidence 456666666 667776654333222 2212 22333335577788753
No 97
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.35 E-value=21 Score=36.46 Aligned_cols=173 Identities=19% Similarity=0.202 Sum_probs=87.6
Q ss_pred ccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe--EEeeeccCCCCCC-CCcceEEEE-CCEEEEEcCCCCCC
Q 010011 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTP-RDSHSCTTV-GENLYVFGGTDGMN 107 (520)
Q Consensus 32 R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W~~l~~~g~~P~~-R~~hs~~~~-~~~iyv~GG~~~~~ 107 (520)
-.-|.+...++++++|+.-= -.+.+++|+..... ....... ..|.. --.|.+..- +..+|+..-.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~---- 212 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL---- 212 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT----
T ss_pred ccceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC----
Confidence 45688888888998888531 13668888887665 5442211 12221 112333322 4579998643
Q ss_pred CCCcEEEEECC--CCeEEeecccCCCCCCC----CCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEc--Ccce
Q 010011 108 PLRDLHILDTS--SHTWISPSVRGEGPEAR----EGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNT--ETFV 177 (520)
Q Consensus 108 ~~~~~~~yd~~--t~~W~~~~~~g~~p~~r----~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~--~t~~ 177 (520)
.+.+.+|+.. +..++.++.....|... ..+..++. ++.||+.-.- .+.|.+|++ .+.+
T Consensus 213 -s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----------~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 213 -SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----------SNSISVFDLDPATGT 280 (345)
T ss_dssp -TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----------TTEEEEEEECTTTTT
T ss_pred -CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----------CCEEEEEEEecCCCc
Confidence 3556666655 77776655433333322 22233333 3568886431 456777776 4445
Q ss_pred EEEcc---cCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeC
Q 010011 178 WKRAT---TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (520)
Q Consensus 178 W~~v~---~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~ 234 (520)
.+.+. ..+.. ||. .++..-++.|||.+. ..+. -.++..|.++..+..+..
T Consensus 281 l~~~~~~~~~G~~--Pr~-~~~s~~g~~l~Va~~-~s~~---v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 281 LTLVQTVPTGGKF--PRH-FAFSPDGRYLYVANQ-DSNT---VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEEEESSSS--EEE-EEE-TTSSEEEEEET-TTTE---EEEEEEETTTTEEEEEEE
T ss_pred eEEEEEEeCCCCC--ccE-EEEeCCCCEEEEEec-CCCe---EEEEEEeCCCCcEEEecc
Confidence 55443 22222 221 222223455666443 2221 124445778989888764
No 98
>PRK03629 tolB translocation protein TolB; Provisional
Probab=85.70 E-value=52 Score=34.81 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=101.6
Q ss_pred EEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 39 ~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
..++|++|.... .... ...++++|..+++-+.+. ..+..-.......-+.+|++....++ ..++|++|+.
T Consensus 206 wSPDG~~la~~s-~~~g---~~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~ 275 (429)
T PRK03629 206 WSPDGSKLAYVT-FESG---RSALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLA 275 (429)
T ss_pred EcCCCCEEEEEE-ecCC---CcEEEEEECCCCCeEEcc---CCCCCcCCeEECCCCCEEEEEEcCCC---CcEEEEEECC
Confidence 335566555432 2111 246899999888766643 12111111111112345655433222 2369999999
Q ss_pred CCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~ 198 (520)
+.+.+++.. .... ........+++.++|..- ..+ ...+|.+|+.+...+.+...+. ........
T Consensus 276 tg~~~~lt~---~~~~-~~~~~wSPDG~~I~f~s~-----~~g---~~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~S 339 (429)
T PRK03629 276 SGQIRQVTD---GRSN-NTEPTWFPDSQNLAYTSD-----QAG---RPQVYKVNINGGAPQRITWEGS----QNQDADVS 339 (429)
T ss_pred CCCEEEccC---CCCC-cCceEECCCCCEEEEEeC-----CCC---CceEEEEECCCCCeEEeecCCC----CccCEEEC
Confidence 888776542 1111 111122224443434331 001 2478999998877776642211 11112222
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 199 ~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
-+++.+++.+.... ...++.+|+++..++.+.... ........-+++.+++.+.... ...+++.+++..
T Consensus 340 pDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~~~~G~ 408 (429)
T PRK03629 340 SDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM---GSVLNLVSTDGR 408 (429)
T ss_pred CCCCEEEEEEccCC---CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC---ceEEEEEECCCC
Confidence 34544444433322 246899999999988776421 1111233345666666654322 234667776554
Q ss_pred cEEEe
Q 010011 279 LWTKV 283 (520)
Q Consensus 279 ~W~~l 283 (520)
.=..+
T Consensus 409 ~~~~l 413 (429)
T PRK03629 409 FKARL 413 (429)
T ss_pred CeEEC
Confidence 43333
No 99
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=85.50 E-value=47 Score=34.19 Aligned_cols=232 Identities=14% Similarity=0.124 Sum_probs=113.1
Q ss_pred CCCccceEEEEEcCCCEEEEEcCc---CCCCCCcCeEEEEECCCCeEEe-eeccCCCCCCCC-------cceEEEECCEE
Q 010011 29 PGKRWGHTCNAIKGGRFLYVFGGY---GKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPTPRD-------SHSCTTVGENL 97 (520)
Q Consensus 29 P~~R~ghs~~~v~~g~~Iyi~GG~---~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~~R~-------~hs~~~~~~~i 97 (520)
|..+..|.. ..++++.||+.-.+ .......+.+.+||+.+.+-.. ++ .++.||. .++...-+..+
T Consensus 44 ~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~---~p~~p~~~~~~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 44 DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE---LPEGPRFLVGTYPWMTSLTPDNKTL 119 (352)
T ss_pred EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc---cCCCchhhccCccceEEECCCCCEE
Confidence 444444443 67788999998874 1122245779999999987553 32 2233342 22222224468
Q ss_pred EEEcCCCCCCCCCcEEEEECCCCeEEe-ecccCC---CCCCCCCceEEEECCE-EE---------------EEeC-----
Q 010011 98 YVFGGTDGMNPLRDLHILDTSSHTWIS-PSVRGE---GPEAREGHSAALVGKR-LF---------------IFGG----- 152 (520)
Q Consensus 98 yv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~g~---~p~~r~~hs~~~~~~~-ly---------------v~GG----- 152 (520)
|+.- ..+-+.+-+.|+.+++-.. +++.+. .+.....+.+...++. +. +|-+
T Consensus 120 ~V~n----~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v 195 (352)
T TIGR02658 120 LFYQ----FSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL 195 (352)
T ss_pred EEec----CCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcccc
Confidence 8762 2345678888988877643 332110 1111122222222222 22 2222
Q ss_pred -CCCCCCC-CCc----ceeceeEEEEcCc------ceEEEcccCC----CCCCCCcceeEEeeCCEEEEE--ecCCCC-C
Q 010011 153 -CGKSSNT-NDE----VYYNDLYILNTET------FVWKRATTSG----NPPSARDSHTCSSWKNKIIVI--GGEDGH-D 213 (520)
Q Consensus 153 -~~~~~~~-~~~----~~~~~v~~~d~~t------~~W~~v~~~~----~~p~~r~~h~~~~~~~~lyv~--GG~~~~-~ 213 (520)
....... .+. .+...++..|+.. ..|..+.... -.|......++..-++++||. ||..+. .
T Consensus 196 ~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 196 INHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred ccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence 0000000 010 1125667777422 3466553221 112222222222336889983 222111 2
Q ss_pred cccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-C-C-EEEEEecccCCCCccCcEEEEecCCCc
Q 010011 214 YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G-K-NLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 214 ~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~-~-~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
...+.++++|.++.+-.. . .+..+.-+.++.. + . .+|+.-+. .+++.++|..+.+
T Consensus 276 ~~~~~V~ViD~~t~kvi~--~---i~vG~~~~~iavS~Dgkp~lyvtn~~------s~~VsViD~~t~k 333 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLR--K---IELGHEIDSINVSQDAKPLLYALSTG------DKTLYIFDAETGK 333 (352)
T ss_pred CCCCEEEEEECCCCeEEE--E---EeCCCceeeEEECCCCCeEEEEeCCC------CCcEEEEECcCCe
Confidence 234679999987755443 3 3334444444443 3 3 46665543 3559999988874
No 100
>PRK13684 Ycf48-like protein; Provisional
Probab=85.16 E-value=47 Score=33.87 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=103.7
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCC-CCcceEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
+...+.+..+++|-. ..++.=.-.-.+|++.... .|.. ....++...++..|+.|.. ..+++=+
T Consensus 51 v~F~d~~~g~avG~~-------G~il~T~DgG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~ 115 (334)
T PRK13684 51 IAFTDPNHGWLVGSN-------RTLLETNDGGETWEERSLD--LPEENFRLISISFKGDEGWIVGQP------SLLLHTT 115 (334)
T ss_pred EEEeCCCcEEEEECC-------CEEEEEcCCCCCceECccC--CcccccceeeeEEcCCcEEEeCCC------ceEEEEC
Confidence 334345557777742 2233322334689986432 2212 2222333345566766521 2233322
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCccee
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~ 195 (520)
-.-.+|+++......|. .......+ ++.+++.|.. ..+++-+-.-.+|+.+... ..-..+.
T Consensus 116 DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~------------G~i~~S~DgG~tW~~~~~~----~~g~~~~ 177 (334)
T PRK13684 116 DGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV------------GAIYRTTDGGKNWEALVED----AAGVVRN 177 (334)
T ss_pred CCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc------------ceEEEECCCCCCceeCcCC----CcceEEE
Confidence 22358988753211222 22223333 3456666552 3455555567899998632 2223344
Q ss_pred EEeeCCEEEEEecCCCCCcccCceEEE-ECCCCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcEEEE
Q 010011 196 CSSWKNKIIVIGGEDGHDYYLSDVHIL-DTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMI 273 (520)
Q Consensus 196 ~~~~~~~lyv~GG~~~~~~~~~~i~~y-d~~t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~~y 273 (520)
+....+..++..|..+. ++.- |....+|+.+.. +..+.-+++.. -++.++++|... ..++
T Consensus 178 i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~ 239 (334)
T PRK13684 178 LRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG--------QIRF 239 (334)
T ss_pred EEECCCCeEEEEeCCce------EEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC--------EEEE
Confidence 44444444444443322 3322 344567998864 33344444443 356788887531 2233
Q ss_pred --ecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcc
Q 010011 274 --DVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 274 --d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (520)
+-.-.+|+.+... . +...+...+... ..++.+++.|.
T Consensus 240 ~s~d~G~sW~~~~~~-~-~~~~~~l~~v~~--~~~~~~~~~G~ 278 (334)
T PRK13684 240 NDPDDLESWSKPIIP-E-ITNGYGYLDLAY--RTPGEIWAGGG 278 (334)
T ss_pred ccCCCCCccccccCC-c-cccccceeeEEE--cCCCCEEEEcC
Confidence 2233489976421 1 112222222222 23566777764
No 101
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=85.02 E-value=33 Score=32.01 Aligned_cols=175 Identities=9% Similarity=0.050 Sum_probs=77.1
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCc
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (520)
..+.+||..+++....- . .....-.++... ++++++.|+.+ ..+.+||+.+..-...- . .....-.
T Consensus 73 ~~i~i~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~---~-~~~~~i~ 139 (289)
T cd00200 73 KTIRLWDLETGECVRTL-T---GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTL---R-GHTDWVN 139 (289)
T ss_pred CeEEEEEcCcccceEEE-e---ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEe---c-cCCCcEE
Confidence 45888988875322211 0 001111222222 33566666532 46888998865433211 0 0111112
Q ss_pred eEEEEC-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE-EEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCcc
Q 010011 139 SAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYY 215 (520)
Q Consensus 139 s~~~~~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W-~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~ 215 (520)
++.... +.+++.|+. ...+.+||+.+.+- ..+.. . ...-.++... ++..+++++.+
T Consensus 140 ~~~~~~~~~~l~~~~~-----------~~~i~i~d~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~l~~~~~~----- 198 (289)
T cd00200 140 SVAFSPDGTFVASSSQ-----------DGTIKLWDLRTGKCVATLTG----H-TGEVNSVAFSPDGEKLLSSSSD----- 198 (289)
T ss_pred EEEEcCcCCEEEEEcC-----------CCcEEEEEccccccceeEec----C-ccccceEEECCCcCEEEEecCC-----
Confidence 233333 344444431 23577888764321 11210 0 1111222222 44456666542
Q ss_pred cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEEC-CEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 216 ~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
..+..||..+.+....-. .....-.++.... +.+++.++.. ..+.+||+.+..
T Consensus 199 -~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~------~~i~i~~~~~~~ 252 (289)
T cd00200 199 -GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLLASGSED------GTIRVWDLRTGE 252 (289)
T ss_pred -CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEEEEEcCC------CcEEEEEcCCce
Confidence 358889987643332211 1111222233333 4555555422 348899987643
No 102
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=84.83 E-value=41 Score=36.39 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=45.0
Q ss_pred CCCCCCCceEEEEC--CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEec
Q 010011 131 GPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (520)
Q Consensus 131 ~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG 208 (520)
+-.|+++.-+++.. -.||+.|- -.++|++|++...|-..-.. ..+-..+.-+.--+.|+.+||
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------------g~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------------GSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------------CcceEEEEcccccccccccc---ccccceeeeecCccceEEecc
Confidence 34567777777653 24666554 47899999999888543211 111111111112466889998
Q ss_pred CCCCCcccCceEEEECCCCc
Q 010011 209 EDGHDYYLSDVHILDTDTLT 228 (520)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~ 228 (520)
.++ .++.+|+.+..
T Consensus 195 ~~g------~VEfwDpR~ks 208 (703)
T KOG2321|consen 195 EDG------VVEFWDPRDKS 208 (703)
T ss_pred cCc------eEEEecchhhh
Confidence 654 37778876543
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=84.38 E-value=41 Score=32.50 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=72.9
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~ 114 (520)
....++++.+|+.++. .+.+.+||..+++....-..+ +.+ ..++.. ++.+|+.++.+ +.+.+
T Consensus 36 l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~ 99 (300)
T TIGR03866 36 ITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANEDD-----NLVTV 99 (300)
T ss_pred eEECCCCCEEEEEECC------CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC-----CeEEE
Confidence 3444566667777653 245889999887765421111 111 122222 34577765432 36899
Q ss_pred EECCCCeEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcc
Q 010011 115 LDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~ 193 (520)
||+.+.+-... .+.....++++. .++.+++++... .+.++.+|..+.+-......+..| .
T Consensus 100 ~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~~~----~ 160 (300)
T TIGR03866 100 IDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSET----------TNMAHFIDTKTYEIVDNVLVDQRP----R 160 (300)
T ss_pred EECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecC----------CCeEEEEeCCCCeEEEEEEcCCCc----c
Confidence 99987543211 111111123333 345666665521 123455677654432211111111 1
Q ss_pred eeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcE
Q 010011 194 HTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW 229 (520)
Q Consensus 194 h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W 229 (520)
+.....+++.+++++... +.+..||.++.+.
T Consensus 161 ~~~~s~dg~~l~~~~~~~-----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIG-----GTVSVIDVATRKV 191 (300)
T ss_pred EEEECCCCCEEEEEcCCC-----CEEEEEEcCccee
Confidence 222223555444444321 3488899887654
No 104
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=84.21 E-value=8.9 Score=33.09 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=56.5
Q ss_pred EECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEE
Q 010011 142 LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHI 221 (520)
Q Consensus 142 ~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~ 221 (520)
.++|-+|...-. .....+.+.+||+.+.+|+.+..............++.++++|-++.-........-++|+
T Consensus 3 cinGvly~~a~~-------~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWv 75 (129)
T PF08268_consen 3 CINGVLYWLAWS-------EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWV 75 (129)
T ss_pred EECcEEEeEEEE-------CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEE
Confidence 356777766553 1223567999999999999887421233555666777889998887554332212356888
Q ss_pred E-ECCCCcEEEeeC
Q 010011 222 L-DTDTLTWKELNT 234 (520)
Q Consensus 222 y-d~~t~~W~~~~~ 234 (520)
+ |-++..|.+...
T Consensus 76 LeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 76 LEDYEKQEWSKKHI 89 (129)
T ss_pred eeccccceEEEEEE
Confidence 8 466788997644
No 105
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.86 E-value=49 Score=33.31 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=71.0
Q ss_pred CcEEEEECCCC-----eEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce-EEEccc
Q 010011 110 RDLHILDTSSH-----TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATT 183 (520)
Q Consensus 110 ~~~~~yd~~t~-----~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~-W~~v~~ 183 (520)
..+++|+.... +++.+... ..+ -.-.+++.++++|++.-| +.++.|++...+ +.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~--g~V~ai~~~~~~lv~~~g-------------~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVK--GPVTAICSFNGRLVVAVG-------------NKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EES--S-EEEEEEETTEEEEEET-------------TEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eec--CcceEhhhhCCEEEEeec-------------CEEEEEEccCcccchhhhe
Confidence 67999998885 55544311 122 124566777899777766 567788887777 777763
Q ss_pred CCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEe
Q 010011 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFG 258 (520)
Q Consensus 184 ~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~G 258 (520)
. ..+-...++...++.|++ |-...+ -.++.|+.+..+-..+.. -..++...++..+ ++..++.+
T Consensus 126 ~---~~~~~i~sl~~~~~~I~v-gD~~~s----v~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 126 Y---DSPFYITSLSVFKNYILV-GDAMKS----VSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp E----BSSSEEEEEEETTEEEE-EESSSS----EEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEEE
T ss_pred e---cceEEEEEEeccccEEEE-EEcccC----EEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEEE
Confidence 2 233355566667786554 432111 125567877777777775 4556776666666 55544433
No 106
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.66 E-value=60 Score=33.88 Aligned_cols=194 Identities=17% Similarity=0.166 Sum_probs=98.6
Q ss_pred cCeEEEEECCCCeEEeeeccCCCCCCCC-cceEEEE-CCE-EEEEcCCCCCCCCCcEEEEECCCC-----eEEeecccCC
Q 010011 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRD-SHSCTTV-GEN-LYVFGGTDGMNPLRDLHILDTSSH-----TWISPSVRGE 130 (520)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~-~hs~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~t~-----~W~~~~~~g~ 130 (520)
...++++...+..-....+- ..+.... ...+..- +++ |+|.-.. +.. .+++|.+|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvf-e~~~~~~~~~~~~~s~d~~~l~i~~~~-~~~-~s~v~~~d~~~~~~~~~~~~~l~~--- 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVF-EEPDEPFWFVSVSRSKDGRYLFISSSS-GTS-ESEVYLLDLDDGGSPDAKPKLLSP--- 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEE-C-TTCTTSEEEEEE-TTSSEEEEEEES-SSS-EEEEEEEECCCTTTSS-SEEEEEE---
T ss_pred CcEEEEEECCCChHhCeeEE-eecCCCcEEEEEEecCcccEEEEEEEc-ccc-CCeEEEEeccccCCCcCCcEEEeC---
Confidence 56788888877654411111 1122222 2222222 333 4443322 122 478999999875 7877652
Q ss_pred CCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce---EEEcccCCCCCCC-CcceeEEeeCCEEEEE
Q 010011 131 GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATTSGNPPSA-RDSHTCSSWKNKIIVI 206 (520)
Q Consensus 131 ~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~---W~~v~~~~~~p~~-r~~h~~~~~~~~lyv~ 206 (520)
+..-..+.+...++.+|+.-.. ......+..+++.... |..+- ..+.. ..--.+...++.|++.
T Consensus 275 -~~~~~~~~v~~~~~~~yi~Tn~--------~a~~~~l~~~~l~~~~~~~~~~~l---~~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 275 -REDGVEYYVDHHGDRLYILTND--------DAPNGRLVAVDLADPSPAEWWTVL---IPEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp -SSSS-EEEEEEETTEEEEEE-T--------T-TT-EEEEEETTSTSGGGEEEEE---E--SSSEEEEEEEEETTEEEEE
T ss_pred -CCCceEEEEEccCCEEEEeeCC--------CCCCcEEEEecccccccccceeEE---cCCCCceeEEEEEEECCEEEEE
Confidence 1122223344458899998652 1223567788887654 66432 11222 1233344558888876
Q ss_pred ecCCCCCcccCceEEEECC-CCcEEEeeCCCCCCCCCceeEEEEE----CCE-EEEEecccCCCCccCcEEEEecCCCcE
Q 010011 207 GGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAF----GKN-LFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 207 GG~~~~~~~~~~i~~yd~~-t~~W~~~~~~~~~p~~R~~hs~~~~----~~~-iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
-=.+ ....+.++|+. +..-..+.. |. .+...... .+. .|.+.++.. ...+|.||+.+++.
T Consensus 343 ~~~~----~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~~~~~~~~~~~~~ss~~~----P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 343 YREN----GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVSGDFDSDELRFSYSSFTT----PPTVYRYDLATGEL 408 (414)
T ss_dssp EEET----TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEES-TT-SEEEEEEEETTE----EEEEEEEETTTTCE
T ss_pred EEEC----CccEEEEEECCCCcEEeeecC----Cc--ceEEeccCCCCCCCEEEEEEeCCCC----CCEEEEEECCCCCE
Confidence 4332 24568999998 433333332 22 22211111 233 455566543 35699999999988
Q ss_pred EEee
Q 010011 281 TKVI 284 (520)
Q Consensus 281 ~~l~ 284 (520)
+.+.
T Consensus 409 ~~~k 412 (414)
T PF02897_consen 409 TLLK 412 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 107
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.03 E-value=60 Score=33.42 Aligned_cols=196 Identities=18% Similarity=0.258 Sum_probs=98.0
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCe--EEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCC-
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS- 119 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t- 119 (520)
++++|+.. ....++.+|+.+.+ |+..... -...........+++||+-. .++ .+++||..+
T Consensus 68 dg~v~~~~-------~~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~-~~g-----~~y~ld~~~G 131 (370)
T COG1520 68 DGTVYVGT-------RDGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGS-WDG-----KLYALDASTG 131 (370)
T ss_pred CCeEEEec-------CCCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEec-ccc-----eEEEEECCCC
Confidence 45677751 11268999999876 9874311 00111122222267766643 332 799999964
Q ss_pred -CeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCc--ceEEEcccCCCCCCCCcceeE
Q 010011 120 -HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTC 196 (520)
Q Consensus 120 -~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t--~~W~~v~~~~~~p~~r~~h~~ 196 (520)
..|...... . ++..-..+..++.+|+--. ...++++|..+ ..|+.-...+ . ..+.....
T Consensus 132 ~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s~------------~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~ 193 (370)
T COG1520 132 TLVWSRNVGG---S-PYYASPPVVGDGTVYVGTD------------DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSP 193 (370)
T ss_pred cEEEEEecCC---C-eEEecCcEEcCcEEEEecC------------CCeEEEEEccCCcEEEEEecCCc-c-ccccccCc
Confidence 458764421 1 3333344444556665421 35678888774 5687544221 1 22222222
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCC--cEEEeeC--CCCCC---CCCceeEEEEECCEEEEEecccCCCCccCc
Q 010011 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNT--SGMVL---SPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (520)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~~~~--~~~~p---~~R~~hs~~~~~~~iyv~GG~~~~~~~~~d 269 (520)
+..++.+|+-. .+ ....++.+|+++. .|+.-.. .+... .+......+.+++.+|.... ...
T Consensus 194 ~~~~~~vy~~~-~~----~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-------~g~ 261 (370)
T COG1520 194 AIASGTVYVGS-DG----YDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY-------GGK 261 (370)
T ss_pred eeecceEEEec-CC----CcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec-------CCe
Confidence 24455555542 21 1226899999754 4774221 11110 12333334444444433222 123
Q ss_pred EEEEecCCC--cEEEee
Q 010011 270 LYMIDVDSG--LWTKVI 284 (520)
Q Consensus 270 v~~yd~~~~--~W~~l~ 284 (520)
++++|..+. .|+.-.
T Consensus 262 ~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 262 LLCLDADTGELIWSFPA 278 (370)
T ss_pred EEEEEcCCCceEEEEec
Confidence 788887765 476543
No 108
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.86 E-value=56 Score=32.91 Aligned_cols=228 Identities=14% Similarity=0.190 Sum_probs=95.2
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
.+...+.+.-|++|-. ..++.=+-.-.+|..+....+.+......++...++..|++|-. .-++.-.
T Consensus 21 dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~ 87 (302)
T PF14870_consen 21 DVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTT 87 (302)
T ss_dssp EEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEES
T ss_pred EEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEec
Confidence 3344456678888753 22332222346899875322222122333455568889998731 1123222
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCccee
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~ 195 (520)
-.-.+|++++...++|. ..+.... -++.++++|.. ..+|+-.-.-.+|+.+... .. -....
T Consensus 88 DgG~tW~~v~l~~~lpg--s~~~i~~l~~~~~~l~~~~------------G~iy~T~DgG~tW~~~~~~---~~-gs~~~ 149 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPG--SPFGITALGDGSAELAGDR------------GAIYRTTDGGKTWQAVVSE---TS-GSIND 149 (302)
T ss_dssp STTSS-EE----TT-SS---EEEEEEEETTEEEEEETT--------------EEEESSTTSSEEEEE-S--------EEE
T ss_pred CCCCCcEEeecCCCCCC--CeeEEEEcCCCcEEEEcCC------------CcEEEeCCCCCCeeEcccC---Cc-ceeEe
Confidence 33578999874333332 2233333 45677777662 3455555566799988632 11 11122
Q ss_pred EEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcEEEE
Q 010011 196 CSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMI 273 (520)
Q Consensus 196 ~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~~y 273 (520)
+... ++++++++.. +. -+...|+-...|+.... +..|.--++.. -++.++++. . +. .+.+=
T Consensus 150 ~~r~~dG~~vavs~~-G~-----~~~s~~~G~~~w~~~~r----~~~~riq~~gf~~~~~lw~~~-~-Gg-----~~~~s 212 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSR-GN-----FYSSWDPGQTTWQPHNR----NSSRRIQSMGFSPDGNLWMLA-R-GG-----QIQFS 212 (302)
T ss_dssp EEE-TTS-EEEEETT-SS-----EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-T-TT-----EEEEE
T ss_pred EEECCCCcEEEEECc-cc-----EEEEecCCCccceEEcc----CccceehhceecCCCCEEEEe-C-Cc-----EEEEc
Confidence 2222 5665555532 22 12345777778999875 34444444443 455676654 1 11 13333
Q ss_pred e--cCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccC
Q 010011 274 D--VDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (520)
Q Consensus 274 d--~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (520)
+ -...+|.+... +.....+.+..... ..++.+++.||..
T Consensus 213 ~~~~~~~~w~~~~~--~~~~~~~~~ld~a~--~~~~~~wa~gg~G 253 (302)
T PF14870_consen 213 DDPDDGETWSEPII--PIKTNGYGILDLAY--RPPNEIWAVGGSG 253 (302)
T ss_dssp E-TTEEEEE---B---TTSS--S-EEEEEE--SSSS-EEEEESTT
T ss_pred cCCCCccccccccC--CcccCceeeEEEEe--cCCCCEEEEeCCc
Confidence 3 33456776321 11223333322222 3567888888754
No 109
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.65 E-value=67 Score=33.71 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=59.2
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCC--CcceEEEECCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPR--DSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R--~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
.+.+.-+++|-++ .+..=+-.-.+|.+..........+ ...++...++..|++|-. ..++.=+-.
T Consensus 98 ~d~~~GwAVG~~G-------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------G~il~T~Dg 164 (398)
T PLN00033 98 DDPTHGFLLGTRQ-------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------AILLHTSDG 164 (398)
T ss_pred CCCCEEEEEcCCC-------EEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc------eEEEEEcCC
Confidence 3455678887632 2333333456899853211111111 234555567788888632 122222223
Q ss_pred CCeEEeecccCCCCCCCCCceEEEEC-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEc
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v 181 (520)
-.+|+.++....+|.. .+....++ +.+++.|.. ..+++-+-.-.+|+.+
T Consensus 165 G~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 165 GETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred CCCceECccccCCCCC--ceEEEEECCCceEEEecc------------ceEEEECCCCCCceEc
Confidence 4789887643222333 23333343 557777753 2355555566789987
No 110
>PRK02889 tolB translocation protein TolB; Provisional
Probab=82.47 E-value=70 Score=33.76 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=75.0
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p 188 (520)
..+|++|+.+.+=..+. ..+.. ........++ +|++..... + ..++|.+|..+...+++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~------g---~~~Iy~~d~~~~~~~~lt~~---~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGS-NSAPAWSPDGRTLAVALSRD------G---NSQIYTVNADGSGLRRLTQS---S 283 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCC-ccceEECCCCCEEEEEEccC------C---CceEEEEECCCCCcEECCCC---C
Confidence 46999999887654443 11211 1112222244 454433311 1 36799999987777766421 1
Q ss_pred CCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccC
Q 010011 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (520)
Q Consensus 189 ~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 268 (520)
.........-+++.++|.....+ ..++|.+|..+...+.+...+ .........-+++.+++...... ..
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~~g---~~ 352 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYISRVGG---AF 352 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC----CCcCceEECCCCCEEEEEEccCC---cE
Confidence 11111122234544444332221 246888998888777765322 11111223334443333332221 13
Q ss_pred cEEEEecCCCcEEEeee
Q 010011 269 DLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 269 dv~~yd~~~~~W~~l~~ 285 (520)
.++++|+.+.....+..
T Consensus 353 ~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 353 KLYVQDLATGQVTALTD 369 (427)
T ss_pred EEEEEECCCCCeEEccC
Confidence 69999999988777653
No 111
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=81.29 E-value=54 Score=31.72 Aligned_cols=113 Identities=24% Similarity=0.300 Sum_probs=67.8
Q ss_pred CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeC-CEEEEEecCCCCCcccCceEEE
Q 010011 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHIL 222 (520)
Q Consensus 144 ~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~-~~lyv~GG~~~~~~~~~~i~~y 222 (520)
.|.|+..|| ...+|..|+++.+.+..- ....-+-|+.+..+ +.=++.|+.++. +-++
T Consensus 126 enSi~~AgG------------D~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qilsG~EDGt------vRvW 183 (325)
T KOG0649|consen 126 ENSILFAGG------------DGVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQILSGAEDGT------VRVW 183 (325)
T ss_pred CCcEEEecC------------CeEEEEEEecCCEEEEEE----cCCcceeeeeeecccCcceeecCCCcc------EEEE
Confidence 578999998 356889999999988763 12334566666542 334556666554 6678
Q ss_pred ECCCCcEEEeeCC---CCCCCCCcee--EEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 223 DTDTLTWKELNTS---GMVLSPRAGH--STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 223 d~~t~~W~~~~~~---~~~p~~R~~h--s~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
|++|.+-..+-.. .....|-.+- .+...+..-+|.||.- .+-.|++...+=+.+-+
T Consensus 184 d~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-------~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 184 DTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-------KLSLWHLRSSESTCVFP 244 (325)
T ss_pred eccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-------ceeEEeccCCCceEEEe
Confidence 8888775554321 1122222333 4555566667777753 25566666666555543
No 112
>PRK13684 Ycf48-like protein; Provisional
Probab=79.27 E-value=78 Score=32.28 Aligned_cols=204 Identities=11% Similarity=0.099 Sum_probs=95.2
Q ss_pred EEEEECCCCeEEeeeccCCCCCCCCcceEEEEC-CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceE
Q 010011 62 VHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (520)
Q Consensus 62 ~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~ 140 (520)
+++=+-.-.+|.++......| ........++ +.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~--~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~----~~~g~~~~i 178 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLP--GSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVE----DAAGVVRNL 178 (334)
T ss_pred EEEECCCCCCCeEccCCcCCC--CCceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcC----CCcceEEEE
Confidence 444333346899875211122 2222333443 446666532 245555545678987652 112233344
Q ss_pred EEECCEEEEEeCCCCCCCCCCcceeceeEEE-EcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCcccCc
Q 010011 141 ALVGKRLFIFGGCGKSSNTNDEVYYNDLYIL-NTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSD 218 (520)
Q Consensus 141 ~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~-d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~ 218 (520)
....+..++..|.. -.++.- +....+|+.+.. +..+...+++.. ++.++++|...
T Consensus 179 ~~~~~g~~v~~g~~-----------G~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-------- 235 (334)
T PRK13684 179 RRSPDGKYVAVSSR-----------GNFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-------- 235 (334)
T ss_pred EECCCCeEEEEeCC-----------ceEEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC--------
Confidence 44444444443311 122222 334468998852 333444444443 67788876431
Q ss_pred eEEE--ECCCCcEEEeeCCCCCCCCCc-eeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCce
Q 010011 219 VHIL--DTDTLTWKELNTSGMVLSPRA-GHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARF 294 (520)
Q Consensus 219 i~~y--d~~t~~W~~~~~~~~~p~~R~-~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~ 294 (520)
..++ +-.-.+|+.+.... ..... .+++... ++.+|++|... -++.-.-...+|+.+......|. .
T Consensus 236 ~~~~~s~d~G~sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G~~G-------~v~~S~d~G~tW~~~~~~~~~~~-~- 304 (334)
T PRK13684 236 QIRFNDPDDLESWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGGGNG-------TLLVSKDGGKTWEKDPVGEEVPS-N- 304 (334)
T ss_pred EEEEccCCCCCccccccCCc--cccccceeeEEEcCCCCEEEEcCCC-------eEEEeCCCCCCCeECCcCCCCCc-c-
Confidence 1223 22345899765310 11112 2223333 55788877532 13433334568998754222221 1
Q ss_pred eeeeeeeccccCCEEEEEcc
Q 010011 295 SVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 295 ~~~~~~~~~~~~~~l~v~GG 314 (520)
... ..+ ..++..++.|.
T Consensus 305 ~~~-~~~--~~~~~~~~~G~ 321 (334)
T PRK13684 305 FYK-IVF--LDPEKGFVLGQ 321 (334)
T ss_pred eEE-EEE--eCCCceEEECC
Confidence 111 122 24667777764
No 113
>PTZ00421 coronin; Provisional
Probab=77.45 E-value=1.1e+02 Score=33.09 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=71.1
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
+.+++.||.+ ..+.++|+.+.+-...- .+ .... -.++.. .++.+++.|+. ...+.+||+
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l-~~-h~~~--V~sla~spdG~lLatgs~-----------Dg~IrIwD~ 197 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVI-KC-HSDQ--ITSLEWNLDGSLLCTTSK-----------DKKLNIIDP 197 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEE-cC-CCCc--eEEEEEECCCCEEEEecC-----------CCEEEEEEC
Confidence 3577777754 34778888876532110 00 1111 112222 25667777773 245778888
Q ss_pred CcceE-EEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCCCCCCceeEEEEE
Q 010011 174 ETFVW-KRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAF 250 (520)
Q Consensus 174 ~t~~W-~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~R~~hs~~~~ 250 (520)
.+.+- ..+.. ....+....+...++..++..|.+.. .-..+..||+.+.. ...... .. .....+..+
T Consensus 198 rsg~~v~tl~~---H~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~p~~~~~~----d~-~~~~~~~~~ 267 (493)
T PTZ00421 198 RDGTIVSSVEA---HASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMASPYSTVDL----DQ-SSALFIPFF 267 (493)
T ss_pred CCCcEEEEEec---CCCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCCceeEecc----CC-CCceEEEEE
Confidence 76542 12211 11111111111123344444454321 12458888886533 111110 00 111122222
Q ss_pred --CCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 251 --GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 251 --~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
++.++++||..+ ..|.+||+.++.....
T Consensus 268 d~d~~~L~lggkgD-----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 268 DEDTNLLYIGSKGE-----GNIRCFELMNERLTFC 297 (493)
T ss_pred cCCCCEEEEEEeCC-----CeEEEEEeeCCceEEE
Confidence 455667777433 2388999988775544
No 114
>PRK02889 tolB translocation protein TolB; Provisional
Probab=77.10 E-value=1e+02 Score=32.49 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=95.9
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
+++++|+.. .... ....+|++|+.+++=..+. ..+.. .......- +++|++....++ ..++|.+|..+
T Consensus 205 PDG~~la~~-s~~~---~~~~I~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~ 273 (427)
T PRK02889 205 PDGTKLAYV-SFES---KKPVVYVHDLATGRRRVVA---NFKGS-NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADG 273 (427)
T ss_pred CCCCEEEEE-EccC---CCcEEEEEECCCCCEEEee---cCCCC-ccceEECCCCCEEEEEEccCC---CceEEEEECCC
Confidence 456655443 2221 1246999999887655543 11111 11111122 345655433322 35799999987
Q ss_pred CeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee
Q 010011 120 HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (520)
Q Consensus 120 ~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~ 199 (520)
...+++.. .. ..........+++.++|..- ..+ ...+|.++..+...+.+...+. .........
T Consensus 274 ~~~~~lt~---~~-~~~~~~~wSpDG~~l~f~s~-----~~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~Sp 337 (427)
T PRK02889 274 SGLRRLTQ---SS-GIDTEPFFSPDGRSIYFTSD-----RGG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISP 337 (427)
T ss_pred CCcEECCC---CC-CCCcCeEEcCCCCEEEEEec-----CCC---CcEEEEEECCCCceEEEecCCC----CcCceEECC
Confidence 77665531 11 11111222334443333321 001 2468888888877777753221 111112223
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCC
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
+++.+++....+.. ..++.+|+.+...+.+.... ....-...-+++.+++...... ...++.++...
T Consensus 338 DG~~Ia~~s~~~g~---~~I~v~d~~~g~~~~lt~~~-----~~~~p~~spdg~~l~~~~~~~g---~~~l~~~~~~g 404 (427)
T PRK02889 338 DGKLLAYISRVGGA---FKLYVQDLATGQVTALTDTT-----RDESPSFAPNGRYILYATQQGG---RSVLAAVSSDG 404 (427)
T ss_pred CCCEEEEEEccCCc---EEEEEEECCCCCeEEccCCC-----CccCceECCCCCEEEEEEecCC---CEEEEEEECCC
Confidence 44444443332221 36899999988877664321 1111233345566666554332 23477777643
No 115
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=76.77 E-value=1.5e+02 Score=34.11 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=23.2
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEee
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISP 125 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~ 125 (520)
.+-+.++++||+... .+.++.+|..|.+ |+.-
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEc
Confidence 445677999999854 3578899988754 8753
No 116
>PLN00181 protein SPA1-RELATED; Provisional
Probab=74.71 E-value=1.7e+02 Score=33.74 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=66.4
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
+.+++.|+.+ ..+.+||..+.+-...- .+ ....-.+++.. ++.+++.||. ...+.++|
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~~~~-~~---H~~~V~~l~~~p~~~~~L~Sgs~-----------Dg~v~iWd 604 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLVTEM-KE---HEKRVWSIDYSSADPTLLASGSD-----------DGSVKLWS 604 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEEEEe-cC---CCCCEEEEEEcCCCCCEEEEEcC-----------CCEEEEEE
Confidence 4455666654 35778888776532211 11 11111223332 4567777773 23467777
Q ss_pred cCcce-EEEcccCCCCCCCCcceeEEee---CCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCCCCCCceeE
Q 010011 173 TETFV-WKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHS 246 (520)
Q Consensus 173 ~~t~~-W~~v~~~~~~p~~r~~h~~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~R~~hs 246 (520)
+.+.. ...+... ....++.+ ++.+++.|+.++ .+.+||+.+.. ...+.. .... -..
T Consensus 605 ~~~~~~~~~~~~~-------~~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~~~~~~~~----h~~~-V~~ 666 (793)
T PLN00181 605 INQGVSIGTIKTK-------ANICCVQFPSESGRSLAFGSADH------KVYYYDLRNPKLPLCTMIG----HSKT-VSY 666 (793)
T ss_pred CCCCcEEEEEecC-------CCeEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCccceEecC----CCCC-EEE
Confidence 76543 2222210 11122222 467788887543 48889986542 111111 0001 112
Q ss_pred EEEECCEEEEEecccCCCCccCcEEEEecCC
Q 010011 247 TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 247 ~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
+...++..++.|+.+. .+.+||+..
T Consensus 667 v~f~~~~~lvs~s~D~------~ikiWd~~~ 691 (793)
T PLN00181 667 VRFVDSSTLVSSSTDN------TLKLWDLSM 691 (793)
T ss_pred EEEeCCCEEEEEECCC------EEEEEeCCC
Confidence 2223556666666532 377888764
No 117
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=73.16 E-value=1.3e+02 Score=31.84 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=86.8
Q ss_pred EECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 92 TVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 92 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
..++.++++|+-+. -+-.+|.++..- +....+.--.-|++ ++...++.|++-|||+ ..+-.|
T Consensus 120 ~~d~t~l~s~sDd~-----v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYD-----------g~vrl~ 181 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK-----VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYD-----------GKVRLW 181 (487)
T ss_pred ccCCeEEEecCCCc-----eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCC-----------ceEEEE
Confidence 45788999987532 234455555553 33433333333332 2333467899999974 345667
Q ss_pred EcCcce-EEEcccCCCCCCCCcceeEEeeCCEEEE-EecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCcee----
Q 010011 172 NTETFV-WKRATTSGNPPSARDSHTCSSWKNKIIV-IGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH---- 245 (520)
Q Consensus 172 d~~t~~-W~~v~~~~~~p~~r~~h~~~~~~~~lyv-~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~h---- 245 (520)
|+.+.+ |.. +.. ...|.. .-+..-.+.+++ .|| +.+-++|+.++ +.++..+..|
T Consensus 182 DtR~~~~~v~-eln--hg~pVe-~vl~lpsgs~iasAgG--------n~vkVWDl~~G--------~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 182 DTRSLTSRVV-ELN--HGCPVE-SVLALPSGSLIASAGG--------NSVKVWDLTTG--------GQLLTSMFNHNKTV 241 (487)
T ss_pred EeccCCceeE-Eec--CCCcee-eEEEcCCCCEEEEcCC--------CeEEEEEecCC--------ceehhhhhcccceE
Confidence 776653 322 111 111111 112222334444 444 23555555432 1233333322
Q ss_pred EEEEE--CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 246 STVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 246 s~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
++..+ ++.-++-||.+.. +-+|| +..|..+.... .|.+-.+.+ + ..++.-+++|+.|+.
T Consensus 242 TcL~l~s~~~rLlS~sLD~~------VKVfd--~t~~Kvv~s~~-~~~pvLsia--v---s~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRH------VKVFD--TTNYKVVHSWK-YPGPVLSIA--V---SPDDQTVVIGMSNGL 302 (487)
T ss_pred EEEEeecCCceEeecccccc------eEEEE--ccceEEEEeee-cccceeeEE--e---cCCCceEEEecccce
Confidence 12222 3467778887643 77888 45577766542 233332222 1 347778888887765
No 118
>smart00284 OLF Olfactomedin-like domains.
Probab=72.88 E-value=99 Score=30.30 Aligned_cols=194 Identities=12% Similarity=0.053 Sum_probs=98.3
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEEC----CCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDT----SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~----~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~ 169 (520)
++++|++.|.. ...+.++.|.- ....+.+.- .+|.+-.|.+.++.++.+|.--. ..+.|.
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~-----------~s~~ii 97 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF-----------NSHDIC 97 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec-----------CCccEE
Confidence 46888886653 12334555542 223332211 36777788889999999998543 146799
Q ss_pred EEEcCcceEE---EcccC---CCCCCCCccee---EEeeCCEEEEEecC-CCCCcccCceEEEECCCCcEEEeeCCCCCC
Q 010011 170 ILNTETFVWK---RATTS---GNPPSARDSHT---CSSWKNKIIVIGGE-DGHDYYLSDVHILDTDTLTWKELNTSGMVL 239 (520)
Q Consensus 170 ~~d~~t~~W~---~v~~~---~~~p~~r~~h~---~~~~~~~lyv~GG~-~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p 239 (520)
+||+.+.+-. .++.. ...|-...+++ .++.++-|+|+=.. ...+ .-.+-.+|+.+..-++.=.+ ..
T Consensus 98 KydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g--~ivvSkLnp~tL~ve~tW~T--~~ 173 (255)
T smart00284 98 RFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG--KIVISKLNPATLTIENTWIT--TY 173 (255)
T ss_pred EEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC--CEEEEeeCcccceEEEEEEc--CC
Confidence 9999987654 23211 11222222222 23345556555222 1111 11244677776554332221 11
Q ss_pred CCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEE
Q 010011 240 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (520)
Q Consensus 240 ~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~ 312 (520)
..+...-+.++-+.+|++-...... ..=.+.||..+++=..+.. ..+ .++.+...+-....+++||+.
T Consensus 174 ~k~sa~naFmvCGvLY~~~s~~~~~--~~I~yayDt~t~~~~~~~i--~f~-n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 174 NKRSASNAFMICGILYVTRSLGSKG--EKVFYAYDTNTGKEGHLDI--PFE-NMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred CcccccccEEEeeEEEEEccCCCCC--cEEEEEEECCCCccceeee--eec-cccccceeceeCCCCCeEEEE
Confidence 2233334667778888886422111 1225899988876433322 112 233333333334557777764
No 119
>smart00284 OLF Olfactomedin-like domains.
Probab=72.64 E-value=1e+02 Score=30.26 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=95.2
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEEC----CCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDT----VNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~----~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
+++|++.+.+. ..+.++.|.. ....+.+ .-.+|.+-.+-+.++.++.+|.--. ....+.+||+.+
T Consensus 35 ~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~---~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t 103 (255)
T smart00284 35 SLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPT---DHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTT 103 (255)
T ss_pred ceEEEEccccC---CCcEEEEecCHHHHhccCCce---EEECCCccccccEEEECceEEEEec-----CCccEEEEECCC
Confidence 45777665431 1234555532 2333332 1146777888889999999998643 246799999999
Q ss_pred CeEEeecccCCCCCCC----C-----Cce---EEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc----eEEEccc
Q 010011 120 HTWISPSVRGEGPEAR----E-----GHS---AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF----VWKRATT 183 (520)
Q Consensus 120 ~~W~~~~~~g~~p~~r----~-----~hs---~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~----~W~~v~~ 183 (520)
.+-.... .+|.+. + +++ .++.++-|+|+=.... ..+. -.+-++|+.+. +|..-
T Consensus 104 ~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~---~~g~---ivvSkLnp~tL~ve~tW~T~-- 172 (255)
T smart00284 104 ETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ---NAGK---IVISKLNPATLTIENTWITT-- 172 (255)
T ss_pred CcEEEEE---ecCccccccccccccCCCccEEEEEcCCceEEEEeccC---CCCC---EEEEeeCcccceEEEEEEcC--
Confidence 8864322 123221 1 111 2333455666522111 1111 12345666553 45431
Q ss_pred CCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCc-eeEEEEE---CCEEEEEe
Q 010011 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA-GHSTVAF---GKNLFVFG 258 (520)
Q Consensus 184 ~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~-~hs~~~~---~~~iyv~G 258 (520)
.+ .+....+.++-+.||+.-..... ...-.+.||+.+.+=..+.. +...|. .++++.. +.+||+.-
T Consensus 173 ---~~-k~sa~naFmvCGvLY~~~s~~~~--~~~I~yayDt~t~~~~~~~i---~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 173 ---YN-KRSASNAFMICGILYVTRSLGSK--GEKVFYAYDTNTGKEGHLDI---PFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred ---CC-cccccccEEEeeEEEEEccCCCC--CcEEEEEEECCCCccceeee---eeccccccceeceeCCCCCeEEEEe
Confidence 22 23333456667889988532211 22347889998876444432 222333 4445544 35677653
No 120
>PRK01742 tolB translocation protein TolB; Provisional
Probab=71.41 E-value=1.4e+02 Score=31.45 Aligned_cols=177 Identities=11% Similarity=0.063 Sum_probs=83.5
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECC-EEEEEcCCCCCCCCCcEEEEECCC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
+++++|+ +..+... ...++++|..+++-+.+. ..+. ........-++ +|++....++. -++|.+|+.+
T Consensus 213 PDG~~la-~~s~~~~---~~~i~i~dl~tg~~~~l~---~~~g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~ 281 (429)
T PRK01742 213 PDGSKLA-YVSFENK---KSQLVVHDLRSGARKVVA---SFRG-HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANG 281 (429)
T ss_pred CCCCEEE-EEEecCC---CcEEEEEeCCCCceEEEe---cCCC-ccCceeECCCCCEEEEEEecCCc---EEEEEEECCC
Confidence 4565554 4333221 246899999887665543 1111 11111122244 45443322222 3689999988
Q ss_pred CeEEeecccCCCCCCCCCceEEEECCE-EEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe
Q 010011 120 HTWISPSVRGEGPEAREGHSAALVGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (520)
Q Consensus 120 ~~W~~~~~~g~~p~~r~~hs~~~~~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~ 198 (520)
....++.. ... .........+++ |++..... + ...+|.++..+..-+.+... . +. ....
T Consensus 282 ~~~~~lt~---~~~-~~~~~~wSpDG~~i~f~s~~~------g---~~~I~~~~~~~~~~~~l~~~-----~-~~-~~~S 341 (429)
T PRK01742 282 GTPSQLTS---GAG-NNTEPSWSPDGQSILFTSDRS------G---SPQVYRMSASGGGASLVGGR-----G-YS-AQIS 341 (429)
T ss_pred CCeEeecc---CCC-CcCCEEECCCCCEEEEEECCC------C---CceEEEEECCCCCeEEecCC-----C-CC-ccCC
Confidence 77766542 111 111122223444 44433211 1 24677777765544433211 1 11 1122
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecc
Q 010011 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF 260 (520)
Q Consensus 199 ~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~ 260 (520)
-+++.+++.+. +.++.+|+.+..++.+.... ........-+++++++++.
T Consensus 342 pDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 342 ADGKTLVMING-------DNVVKQDLTSGSTEVLSSTF-----LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCCCEEEEEcC-------CCEEEEECCCCCeEEecCCC-----CCCCceECCCCCEEEEEEc
Confidence 24444444332 35788999999888764311 1111223345666776664
No 121
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=70.92 E-value=1.2e+02 Score=30.41 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=35.1
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCC-CeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC-CC
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVN-QTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS-SH 120 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t-~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~-t~ 120 (520)
++|+..+.+ ..+.+||..+ .+++.+.. .+.....+.++.- +..||+.+.. .+.+..|++. +.
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCC
Confidence 577765432 4577888754 56665542 2222122222222 4457775431 2567777775 45
Q ss_pred eEEeec
Q 010011 121 TWISPS 126 (520)
Q Consensus 121 ~W~~~~ 126 (520)
+++...
T Consensus 69 ~l~~~~ 74 (330)
T PRK11028 69 ALTFAA 74 (330)
T ss_pred ceEEee
Confidence 665443
No 122
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=70.38 E-value=1.1e+02 Score=29.75 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=56.3
Q ss_pred CCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECC-EEEEEcCCCCCC
Q 010011 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMN 107 (520)
Q Consensus 29 P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~iyv~GG~~~~~ 107 (520)
|+|-.+.- -..+..+.|+..||- ..+|..|+++++..+.- .|. .-+-|+++.-+. -=.+-|+.++.
T Consensus 113 evPeINam-~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~-rGH---tDYvH~vv~R~~~~qilsG~EDGt- 179 (325)
T KOG0649|consen 113 EVPEINAM-WLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY-RGH---TDYVHSVVGRNANGQILSGAEDGT- 179 (325)
T ss_pred cCCcccee-EeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE-cCC---cceeeeeeecccCcceeecCCCcc-
Confidence 44443333 334344568888863 35899999999987632 232 235566555332 23344554433
Q ss_pred CCCcEEEEECCCCeEEeec-cc--CCCCCCCCCc--eEEEECCEEEEEeC
Q 010011 108 PLRDLHILDTSSHTWISPS-VR--GEGPEAREGH--SAALVGKRLFIFGG 152 (520)
Q Consensus 108 ~~~~~~~yd~~t~~W~~~~-~~--g~~p~~r~~h--s~~~~~~~lyv~GG 152 (520)
+-++|+.|.+-.++- .- .+...|..+. .+...+..-.|.||
T Consensus 180 ----vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg 225 (325)
T KOG0649|consen 180 ----VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG 225 (325)
T ss_pred ----EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC
Confidence 556677776643321 11 1122222444 44555666777777
No 123
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=70.11 E-value=1.4e+02 Score=31.02 Aligned_cols=247 Identities=15% Similarity=0.076 Sum_probs=107.1
Q ss_pred EEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEE-EEcCCCCCCCCCcEEEEEC
Q 010011 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLY-VFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 39 ~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iy-v~GG~~~~~~~~~~~~yd~ 117 (520)
-..+|++|+ |+|... ....+|..|+.+.+-.+|.. ++ .....+...+.-++.+| +-.+ ..++..|+
T Consensus 43 ft~dG~kll-F~s~~d---g~~nly~lDL~t~~i~QLTd-g~-g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL 109 (386)
T PF14583_consen 43 FTDDGRKLL-FASDFD---GNRNLYLLDLATGEITQLTD-GP-GDNTFGGFLSPDDRALYYVKNG-------RSLRRVDL 109 (386)
T ss_dssp B-TTS-EEE-EEE-TT---SS-EEEEEETTT-EEEE----SS--B-TTT-EE-TTSSEEEEEETT-------TEEEEEET
T ss_pred cCCCCCEEE-EEeccC---CCcceEEEEcccCEEEECcc-CC-CCCccceEEecCCCeEEEEECC-------CeEEEEEC
Confidence 345666665 444322 22568999999999999862 21 12233322322345554 4443 47888998
Q ss_pred CCCeEEeecccCCCCCCCCCceEEEEC-CEEEEEeCCCC-C-C-CCCC---------cceeceeEEEEcCcceEEEcccC
Q 010011 118 SSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGK-S-S-NTND---------EVYYNDLYILNTETFVWKRATTS 184 (520)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~-~-~-~~~~---------~~~~~~v~~~d~~t~~W~~v~~~ 184 (520)
.|.+=+.+- ..|..--+....+++ +.-.++|=... . . .... ....+.+...|+.+.+.+.+-..
T Consensus 110 ~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 110 DTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp TT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred CcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence 887654433 234333332333222 22112221100 0 0 0000 12346788889999888877422
Q ss_pred CCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCC
Q 010011 185 GNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (520)
Q Consensus 185 ~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~ 263 (520)
....+|-... .+..+++|.=...-..+-..||..|........+... .+.-..+|-....++..+.+=+....
T Consensus 187 ----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~~~ 260 (386)
T PF14583_consen 187 ----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPDGSTIWYDSYTPG 260 (386)
T ss_dssp ----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETT
T ss_pred ----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC--CCCcccccccccCCCCEEEEEeecCC
Confidence 1222344333 2566777743333332334799999987777776542 34455667666666654443333222
Q ss_pred CCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCC
Q 010011 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (520)
Q Consensus 264 ~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (520)
. .-.-|..+|+++..=+.+..+ +.+.|-.. ..++.|++-=|.+.
T Consensus 261 ~-~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~s----s~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 261 G-QDFWIAGYDPDTGERRRLMEM-----PWCSHFMS----SPDGKLFVGDGGDA 304 (386)
T ss_dssp T---EEEEEE-TTT--EEEEEEE------SEEEEEE-----TTSSEEEEEE---
T ss_pred C-CceEEEeeCCCCCCceEEEeC-----CceeeeEE----cCCCCEEEecCCCC
Confidence 1 112378899998754444433 23444322 45778887656553
No 124
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=69.16 E-value=1.5e+02 Score=30.78 Aligned_cols=261 Identities=16% Similarity=0.129 Sum_probs=114.1
Q ss_pred ccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEE-eeeccCCC----CCCCCcceEEEECCEEEEEcCCCCC
Q 010011 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWS-QPVIKGSP----PTPRDSHSCTTVGENLYVFGGTDGM 106 (520)
Q Consensus 32 R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~-~l~~~g~~----P~~R~~hs~~~~~~~iyv~GG~~~~ 106 (520)
...+..+...+|+++|+ +.+ ..+.+.++|..+.+=. .++. +.. +.+|...-.+...+..|++--.
T Consensus 78 ~~~~~i~~s~DG~~~~v-~n~-----~~~~v~v~D~~tle~v~~I~~-~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk--- 147 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYV-ANY-----EPGTVSVIDAETLEPVKTIPT-GGMPVDGPESRVAAIVASPGRPEFVVNLK--- 147 (369)
T ss_dssp SEEEEEEE--TTTEEEE-EEE-----ETTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEET---
T ss_pred CCcceEEEcCCCCEEEE-Eec-----CCCceeEeccccccceeeccc-ccccccccCCCceeEEecCCCCEEEEEEc---
Confidence 33344555566775654 333 2356889998876543 3332 222 3344433333345556666422
Q ss_pred CCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCC
Q 010011 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~ 185 (520)
....+|..|.....=.... .....++.|-.....+ +.|+.+-. -.+.+-..|.++.+-..+-..+
T Consensus 148 -d~~~I~vVdy~d~~~~~~~---~i~~g~~~~D~~~dpdgry~~va~~----------~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 148 -DTGEIWVVDYSDPKNLKVT---TIKVGRFPHDGGFDPDGRYFLVAAN----------GSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp -TTTEEEEEETTTSSCEEEE---EEE--TTEEEEEE-TTSSEEEEEEG----------GGTEEEEEETTTTEEEEEEE-S
T ss_pred -cCCeEEEEEecccccccee---eecccccccccccCcccceeeeccc----------ccceeEEEeeccceEEEEeecc
Confidence 2467899987654211111 2334566666666544 33333321 1357788898887655443333
Q ss_pred CCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEEC----CCCcEEEeeCCCCCCCCCceeEEEEECC--EEEEEe
Q 010011 186 NPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDT----DTLTWKELNTSGMVLSPRAGHSTVAFGK--NLFVFG 258 (520)
Q Consensus 186 ~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~----~t~~W~~~~~~~~~p~~R~~hs~~~~~~--~iyv~G 258 (520)
..|.+.....+.-. .+-++..+|..... -.+.--|+ ....|+.+.. .+..-.++-+..+.+ .+|+-
T Consensus 214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~---~~~ig~~~v~v~d~~~wkvv~~---I~~~G~glFi~thP~s~~vwvd- 286 (369)
T PF02239_consen 214 KKPHPGPGANFPHPGFGPVWATSGLGYFA---IPLIGTDPVSVHDDYAWKVVKT---IPTQGGGLFIKTHPDSRYVWVD- 286 (369)
T ss_dssp SSBEETTEEEEEETTTEEEEEEEBSSSSE---EEEEE--TTT-STTTBTSEEEE---EE-SSSS--EE--TT-SEEEEE-
T ss_pred ccccccccccccCCCcceEEeecccccee---cccccCCccccchhhcCeEEEE---EECCCCcceeecCCCCccEEee-
Confidence 33333222222212 23445555442210 01111222 3356887775 333333333444544 35553
Q ss_pred cccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecccccc
Q 010011 259 GFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNE 335 (520)
Q Consensus 259 G~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~ 335 (520)
..-+. -.+.+.++|.++. +.+......+..+..|. -....+..+|+.-..... .+..+|..+.++
T Consensus 287 -~~~~~-~~~~v~viD~~tl--~~~~~i~~~~~~~~~h~---ef~~dG~~v~vS~~~~~~-----~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 287 -TFLNP-DADTVQVIDKKTL--KVVKTITPGPGKRVVHM---EFNPDGKEVWVSVWDGNG-----AIVVYDAKTLKE 351 (369)
T ss_dssp --TT-S-SHT-EEEEECCGT--EEEE-HHHHHT--EEEE---EE-TTSSEEEEEEE--TT-----EEEEEETTTTEE
T ss_pred -ccCCC-CCceEEEEECcCc--ceeEEEeccCCCcEecc---EECCCCCEEEEEEecCCC-----EEEEEECCCcEE
Confidence 11111 1567999999887 33333222222232332 222557777775432221 577888776664
No 125
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=68.17 E-value=1.3e+02 Score=29.83 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=95.4
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCc
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (520)
.+-++|+++..-++.+...+++. .+.-..++ .++|++.|-..-.. ++|+.++.-+..+ .|..-.-.
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yG------rLdPa~~~i~vfp----aPqG~gpy 192 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYG------RLDPARNVISVFP----APQGGGPY 192 (353)
T ss_pred eeEEecCcccceEEeecccccCC--CcccceeeCCCccEEEeeccccce------ecCcccCceeeec----cCCCCCCc
Confidence 57788988888777654333332 23333333 34677665321111 5666665543222 22222223
Q ss_pred eEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCccee-EEe--eCCEEEEEecCCCCCc
Q 010011 139 SAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT-CSS--WKNKIIVIGGEDGHDY 214 (520)
Q Consensus 139 s~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~-~~~--~~~~lyv~GG~~~~~~ 214 (520)
.+|+ -++.+|+..= +-|-+-+.|+.+..=+.+. .|.+....+ -+. --+.+++. ..
T Consensus 193 Gi~atpdGsvwyasl-----------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit------tw 251 (353)
T COG4257 193 GICATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT------TW 251 (353)
T ss_pred ceEECCCCcEEEEec-----------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe------cc
Confidence 3433 4667777521 1244566677666544443 222211111 111 13455554 11
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
-...+++||+.+..|.+.+..+.. +|-...-+---+++++-- --.+.|.+||+++.+.+.+..
T Consensus 252 g~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~se------a~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 252 GTGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSE------ADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred CCceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeec------cccCceeecCcccceEEEecC
Confidence 235699999999999998753322 333333333334555521 113558999999999988753
No 126
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=67.56 E-value=1.6e+02 Score=30.54 Aligned_cols=192 Identities=17% Similarity=0.219 Sum_probs=92.5
Q ss_pred CeEEEEECCCCe-EEeeeccCCCCCCCCcceEEEE---CCEEEEEcCCCCCCCCCcEEEEECCCCeEE-eecccCCCCCC
Q 010011 60 NQVHVFDTVNQT-WSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEA 134 (520)
Q Consensus 60 ~~~~~yd~~t~~-W~~l~~~g~~P~~R~~hs~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~ 134 (520)
+.+.+.|..+++ -.+++ ....-|..... +..+|+.+ ++ ..+.++|+.+.+-. +++ ..
T Consensus 16 ~~v~viD~~t~~~~~~i~------~~~~~h~~~~~s~Dgr~~yv~~-rd-----g~vsviD~~~~~~v~~i~------~G 77 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIP------TGGAPHAGLKFSPDGRYLYVAN-RD-----GTVSVIDLATGKVVATIK------VG 77 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-------STTEEEEEE-TT-SSEEEEEE-TT-----SEEEEEETTSSSEEEEEE-------S
T ss_pred CEEEEEECCCCeEEEEEc------CCCCceeEEEecCCCCEEEEEc-CC-----CeEEEEECCcccEEEEEe------cC
Confidence 678999998875 33443 22222544433 45699985 32 36899999988743 222 22
Q ss_pred CCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce-EEEcccCC---CCCCCCcceeEEeeCCEEEEEecC
Q 010011 135 REGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATTSG---NPPSARDSHTCSSWKNKIIVIGGE 209 (520)
Q Consensus 135 r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~-W~~v~~~~---~~p~~r~~h~~~~~~~~lyv~GG~ 209 (520)
....+.++ .+++.++.+.+ ..+.+.++|.++.+ -+.++..+ ..+.+|...-.....+..||+--.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~----------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANY----------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEE----------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred CCcceEEEcCCCCEEEEEec----------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 22233333 34443333332 24678888987654 33333211 113344433333334555555332
Q ss_pred CCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCC
Q 010011 210 DGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG 289 (520)
Q Consensus 210 ~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~ 289 (520)
+ ..+++..|.....=..+.. ....++-|-.....+.=|++.+... .+.+-++|.+++.-..+...+..
T Consensus 148 d-----~~~I~vVdy~d~~~~~~~~---i~~g~~~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 148 D-----TGEIWVVDYSDPKNLKVTT---IKVGRFPHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp T-----TTEEEEEETTTSSCEEEEE---EE--TTEEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEEEEE-SSS
T ss_pred c-----CCeEEEEEeccccccceee---ecccccccccccCcccceeeecccc----cceeEEEeeccceEEEEeecccc
Confidence 2 3468888865532122222 3345666665555443333333322 34688999998876655444444
Q ss_pred CC
Q 010011 290 PS 291 (520)
Q Consensus 290 p~ 291 (520)
|.
T Consensus 216 p~ 217 (369)
T PF02239_consen 216 PH 217 (369)
T ss_dssp BE
T ss_pred cc
Confidence 33
No 127
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=66.99 E-value=2.8e+02 Score=33.22 Aligned_cols=158 Identities=15% Similarity=0.055 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCC-------CC---CCCCCceEEEE--CCEEEEEeCCCCCCCCCC
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGE-------GP---EAREGHSAALV--GKRLFIFGGCGKSSNTND 161 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~-------~p---~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~ 161 (520)
++.|||.... .+.+++||+.+.......-.|. .+ ....-+.++.. ++.|||....
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------- 760 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--------
Confidence 5678887432 3568999988776543321110 00 01111233333 3458887652
Q ss_pred cceeceeEEEEcCcceEEEcccCCC-C--------------CCCC--cceeEEe-eCCEEEEEecCCCCCcccCceEEEE
Q 010011 162 EVYYNDLYILNTETFVWKRATTSGN-P--------------PSAR--DSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILD 223 (520)
Q Consensus 162 ~~~~~~v~~~d~~t~~W~~v~~~~~-~--------------p~~r--~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd 223 (520)
.+.+.++|+.+.....+..... . .... .-.++++ -++.+||.... .+.|.+||
T Consensus 761 ---n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD 831 (1057)
T PLN02919 761 ---SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLD 831 (1057)
T ss_pred ---CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEE
Confidence 3678889987655332211000 0 0000 0112222 35678887643 35699999
Q ss_pred CCCCcEEEeeCCCCCC-------CCCc--eeEEE-EECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 224 TDTLTWKELNTSGMVL-------SPRA--GHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 224 ~~t~~W~~~~~~~~~p-------~~R~--~hs~~-~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
+++.....+...+..- .... -+.++ .-++++||.-..+ +.|.++|+++.+
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------n~Irvid~~~~~ 891 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------SLIRYLDLNKGE 891 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------CEEEEEECCCCc
Confidence 9998887776543210 0111 11222 2356788876543 358899998875
No 128
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=66.24 E-value=1.4e+02 Score=29.85 Aligned_cols=111 Identities=22% Similarity=0.225 Sum_probs=58.7
Q ss_pred CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEe-eCCCCCCCCCceeEEEE-ECCEEEEEecccCCC
Q 010011 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL-NTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQ 264 (520)
Q Consensus 187 ~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~-~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~ 264 (520)
+|....-.++....++++..||.++ .+-+|++.+..=+.. +....++....+.+++. .+|.-++-|-.+
T Consensus 95 l~s~WVMtCA~sPSg~~VAcGGLdN------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--- 165 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSGNFVACGGLDN------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--- 165 (343)
T ss_pred cCceeEEEEEECCCCCeEEecCcCc------eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC---
Confidence 3443333333334788999999763 466787764422211 11112333444445554 344433333221
Q ss_pred CccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeee---ccccCCEEEEEcccCCC
Q 010011 265 NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL---DPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 265 ~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~---~~~~~~~l~v~GG~~~~ 318 (520)
..+..+|+++..=...-. +|.+.++ .+..+...||.||+++.
T Consensus 166 ---~TCalWDie~g~~~~~f~---------GH~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 166 ---MTCALWDIETGQQTQVFH---------GHTGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred ---ceEEEEEcccceEEEEec---------CCcccEEEEecCCCCCCeEEecccccc
Confidence 237889999986544322 2333222 12337889999999876
No 129
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=64.23 E-value=69 Score=34.73 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=65.4
Q ss_pred CCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEEC--CEEEEEcCCCCCC
Q 010011 30 GKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG--ENLYVFGGTDGMN 107 (520)
Q Consensus 30 ~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~iyv~GG~~~~~ 107 (520)
.|++|.-++.-..+.-||+.|- -+++|++|+..+.|-.+ .-..-..--++.++ +.|+.+||.++
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P-----~~~~~~~lN~v~in~~hgLla~Gt~~g-- 197 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNP-----FETDSGELNVVSINEEHGLLACGTEDG-- 197 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEccccccccc-----cccccccceeeeecCccceEEecccCc--
Confidence 3566666665544445776543 25799999999999873 22222333334443 46888888653
Q ss_pred CCCcEEEEECCCCe-EEeecccCC---CCCCCCC--ceEEEEC-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcce
Q 010011 108 PLRDLHILDTSSHT-WISPSVRGE---GPEAREG--HSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (520)
Q Consensus 108 ~~~~~~~yd~~t~~-W~~~~~~g~---~p~~r~~--hs~~~~~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~ 177 (520)
.++.+|+.+.+ ...+..... .|..-.. .++.... +-|=+.=|.. ...+++||+.+.+
T Consensus 198 ---~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----------~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 198 ---VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----------TGSVLIYDLRASK 261 (703)
T ss_pred ---eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----------CCcEEEEEcccCC
Confidence 47777776543 222222111 2222122 2333333 3555544421 3457899987654
No 130
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.87 E-value=1.4e+02 Score=28.49 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=87.1
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCC-CCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P-~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
+++||.--|.-. .+.+.++|+.++ .|++ .++ ..-.+-+.+.+++.+|..-=.++ -.+.||..+
T Consensus 55 ~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~-----~l~~~~~FgEGit~~gd~~y~LTw~eg-----vaf~~d~~t 120 (262)
T COG3823 55 DGHILESTGLYG----FSKIRVSDLTTGQEIFSE-----KLAPDTVFGEGITKLGDYFYQLTWKEG-----VAFKYDADT 120 (262)
T ss_pred CCEEEEeccccc----cceeEEEeccCceEEEEe-----ecCCccccccceeeccceEEEEEeccc-----eeEEEChHH
Confidence 346666555432 256889999865 4665 333 45677788899999998853322 356677665
Q ss_pred CeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE-E--cccCCCCCCCCcceeE
Q 010011 120 HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-R--ATTSGNPPSARDSHTC 196 (520)
Q Consensus 120 ~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~-~--v~~~~~~p~~r~~h~~ 196 (520)
-+ ..+..+.+-.+-+.+..+.+|++--| ...++.-||++..-. . +...+.+- +.---+
T Consensus 121 ~~-----~lg~~~y~GeGWgLt~d~~~LimsdG------------satL~frdP~tfa~~~~v~VT~~g~pv--~~LNEL 181 (262)
T COG3823 121 LE-----ELGRFSYEGEGWGLTSDDKNLIMSDG------------SATLQFRDPKTFAELDTVQVTDDGVPV--SKLNEL 181 (262)
T ss_pred hh-----hhcccccCCcceeeecCCcceEeeCC------------ceEEEecCHHHhhhcceEEEEECCeec--ccccce
Confidence 32 22345555567788888888888777 233455566554311 1 11111111 111112
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCCc---EEEeeC
Q 010011 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT---WKELNT 234 (520)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~---W~~~~~ 234 (520)
-.+++.+|.= --..+.|.+.||++++ |..++.
T Consensus 182 E~VdG~lyAN------Vw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 182 EWVDGELYAN------VWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred eeeccEEEEe------eeeecceEEEcCCCCcEEEEEEccC
Confidence 2345555531 1245678899999876 777665
No 131
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=60.43 E-value=1.9e+02 Score=28.98 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=70.1
Q ss_pred CeEEEEECCCC-----eEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe-EEeecccCCCCC
Q 010011 60 NQVHVFDTVNQ-----TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT-WISPSVRGEGPE 133 (520)
Q Consensus 60 ~~~~~yd~~t~-----~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~ 133 (520)
..+++|+.... +++.+. ..+.+-.-.+++.++++|.+.-| +.+++|++.... +.... ....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~---~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKA---FYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEE---EE-B
T ss_pred cEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhh---eecc
Confidence 66899998885 555443 22223345677778999766665 468888888777 77655 2333
Q ss_pred CCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEEec
Q 010011 134 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGG 208 (520)
Q Consensus 134 ~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG 208 (520)
+-+-.++...++.|++ |-..+ .-.++.|+.+..+...+.. ...++...++..+ ++. .++++
T Consensus 129 ~~~i~sl~~~~~~I~v-gD~~~---------sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 129 PFYITSLSVFKNYILV-GDAMK---------SVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp SSSEEEEEEETTEEEE-EESSS---------SEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSS-EEEEE
T ss_pred eEEEEEEeccccEEEE-EEccc---------CEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCc-EEEEE
Confidence 3355566666776665 43211 1224466776666776662 3445555555555 554 44444
No 132
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=59.52 E-value=1.9e+02 Score=28.83 Aligned_cols=232 Identities=11% Similarity=0.034 Sum_probs=100.6
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECC-CCeEEeeeccCCCCCC-CCcceEEEECC-EEEEEcCCCCCCCCCcEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV-NQTWSQPVIKGSPPTP-RDSHSCTTVGE-NLYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~-t~~W~~l~~~g~~P~~-R~~hs~~~~~~-~iyv~GG~~~~~~~~~~~ 113 (520)
.+..++++.||+.+. . ...+..|++. ++++..+. ..+.+ ...|.+..-++ .||+.. .. .+.+.
T Consensus 40 l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~g~l~~~~---~~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~ 105 (330)
T PRK11028 40 MVISPDKRHLYVGVR-P-----EFRVLSYRIADDGALTFAA---ESPLPGSPTHISTDHQGRFLFSAS-YN----ANCVS 105 (330)
T ss_pred EEECCCCCEEEEEEC-C-----CCcEEEEEECCCCceEEee---eecCCCCceEEEECCCCCEEEEEE-cC----CCeEE
Confidence 344456777777443 1 2456677775 45665543 11211 11222222233 466653 21 25677
Q ss_pred EEECCCCe-E-EeecccCCCCCCCCCceEEEE-C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcc-eEEEcc-cCCCC
Q 010011 114 ILDTSSHT-W-ISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRAT-TSGNP 187 (520)
Q Consensus 114 ~yd~~t~~-W-~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~-~W~~v~-~~~~~ 187 (520)
+||+.++. . ..+. ..+.....|.++.. + +.+|+..- ..+.+.+||+.+. ...... .....
T Consensus 106 v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~~-----------~~~~v~v~d~~~~g~l~~~~~~~~~~ 171 (330)
T PRK11028 106 VSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPCL-----------KEDRIRLFTLSDDGHLVAQEPAEVTT 171 (330)
T ss_pred EEEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEEeeC-----------CCCEEEEEEECCCCcccccCCCceec
Confidence 88876431 1 1111 11222233554444 3 35666432 1356888888652 222100 00001
Q ss_pred CCCCcceeEEee--CCEEEEEecCCCCCcccCceEEEECC--CCcEEEeeCCCCC----CCCCceeEEEEE--CCEEEEE
Q 010011 188 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMV----LSPRAGHSTVAF--GKNLFVF 257 (520)
Q Consensus 188 p~~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~~~~~~~~~----p~~R~~hs~~~~--~~~iyv~ 257 (520)
+....-+.++.. +..+|+... ..+.+.+||.. +.+++.+...... +.+|....+... ++.+|+.
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNE------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEec------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 111111123322 346777633 23557777765 4455444322112 223433233333 3356665
Q ss_pred ecccCCCCccCcEEEEecC--CCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEc
Q 010011 258 GGFTDSQNLYDDLYMIDVD--SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (520)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~--~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (520)
... .+.+.+|++. ...++.+........++.. .+ ...+..||+..
T Consensus 246 ~~~------~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~----~~-~~dg~~l~va~ 292 (330)
T PRK11028 246 DRT------ASLISVFSVSEDGSVLSFEGHQPTETQPRGF----NI-DHSGKYLIAAG 292 (330)
T ss_pred cCC------CCeEEEEEEeCCCCeEEEeEEEeccccCCce----EE-CCCCCEEEEEE
Confidence 221 2457777764 3445544432222233321 12 13466777754
No 133
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=55.97 E-value=1.1e+02 Score=31.24 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=48.4
Q ss_pred CccceEEEEEcCCCEEEEEcCc---CCCCCCcCeEEEEECCCCeEEeeeccCCCCC-CCCcc------eEEE-ECCEEEE
Q 010011 31 KRWGHTCNAIKGGRFLYVFGGY---GKDNCQTNQVHVFDTVNQTWSQPVIKGSPPT-PRDSH------SCTT-VGENLYV 99 (520)
Q Consensus 31 ~R~ghs~~~v~~g~~Iyi~GG~---~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~-~R~~h------s~~~-~~~~iyv 99 (520)
.-.++ .+..++++.+|+..-+ .....+++-+.+||..|..-..-. .+|. +|... .... -+..+||
T Consensus 36 g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI---~iP~k~R~~~~~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 36 GFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI---EIPPKPRAQVVPYKNMFALSADGKFLYV 111 (342)
T ss_dssp ESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE---EETTS-B--BS--GGGEEE-TTSSEEEE
T ss_pred ccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE---ecCCcchheecccccceEEccCCcEEEE
Confidence 33444 3445778888887654 222336678999999998533200 2232 24321 1222 2445777
Q ss_pred EcCCCCCCCCCcEEEEECCCCeEE
Q 010011 100 FGGTDGMNPLRDLHILDTSSHTWI 123 (520)
Q Consensus 100 ~GG~~~~~~~~~~~~yd~~t~~W~ 123 (520)
+- -.+...+-+.|+..++..
T Consensus 112 ~N----~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 112 QN----FTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp EE----ESSSEEEEEEETTTTEEE
T ss_pred Ec----cCCCCeEEEEECCCCcee
Confidence 62 356678999999988864
No 134
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.76 E-value=2.3e+02 Score=28.47 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=70.5
Q ss_pred CCcEEEEECCCCe----EEeecccCCCCCCCCCceEEE----ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE
Q 010011 109 LRDLHILDTSSHT----WISPSVRGEGPEAREGHSAAL----VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (520)
Q Consensus 109 ~~~~~~yd~~t~~----W~~~~~~g~~p~~r~~hs~~~----~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~ 180 (520)
.+.++.||+.+++ |..-- .-+..-++-.+-+ ++++||+.=+ +....-.+|..|.++..-++
T Consensus 77 YSHVH~yd~e~~~VrLLWkesi---h~~~~WaGEVSdIlYdP~~D~LLlAR~--------DGh~nLGvy~ldr~~g~~~~ 145 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESI---HDKTKWAGEVSDILYDPYEDRLLLARA--------DGHANLGVYSLDRRTGKAEK 145 (339)
T ss_pred cceEEEEEcCCCeEEEEEeccc---CCccccccchhheeeCCCcCEEEEEec--------CCcceeeeEEEcccCCceee
Confidence 4678999998877 54311 1122222211111 1467888744 22334578999999999888
Q ss_pred cccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcE--EEeeCC----CCCCCCCceeEEEEECCEE
Q 010011 181 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW--KELNTS----GMVLSPRAGHSTVAFGKNL 254 (520)
Q Consensus 181 v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W--~~~~~~----~~~p~~R~~hs~~~~~~~i 254 (520)
+... |..+ .+...+..+|-+ +.-..-...+.+||+.+++| +..... +.....|..-.++...+++
T Consensus 146 L~~~---ps~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~ 216 (339)
T PF09910_consen 146 LSSN---PSLK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRL 216 (339)
T ss_pred ccCC---CCcC---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeE
Confidence 8733 3331 222333333322 22222357799999999999 443321 1112233444456666665
Q ss_pred EEE
Q 010011 255 FVF 257 (520)
Q Consensus 255 yv~ 257 (520)
|.|
T Consensus 217 faF 219 (339)
T PF09910_consen 217 FAF 219 (339)
T ss_pred EEE
Confidence 554
No 135
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=53.88 E-value=3e+02 Score=29.21 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=58.8
Q ss_pred eceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCce
Q 010011 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 244 (520)
Q Consensus 165 ~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~ 244 (520)
..++|.+|+.+..-.++.. ......+....-+++-++|.--.++ ..+++.+|++..+=+.+...+ ....
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~----~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~----~~~~ 329 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTN----GFGINTSPSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSG----GGNS 329 (425)
T ss_pred CccEEEEcCCCCcceeccc----CCccccCccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccC----CCCc
Confidence 4679999998877444431 1122223222334444444321111 238999999988877775421 1111
Q ss_pred eEEEEECCEEEEEecccCCCCccCcEEEEecCCCc-EEEeeeC
Q 010011 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL-WTKVITT 286 (520)
Q Consensus 245 hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~-W~~l~~~ 286 (520)
+-...-+++.++|-+...+ . -++..+|+.++. |+.+...
T Consensus 330 ~p~~SpdG~~i~~~~~~~g-~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGG-Q--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred CccCCCCCCEEEEEeccCC-c--eeeEEeccCCCCcEEEcccc
Confidence 3333334444444433322 1 568999998887 8887654
No 136
>PLN00181 protein SPA1-RELATED; Provisional
Probab=53.19 E-value=4.1e+02 Score=30.58 Aligned_cols=174 Identities=11% Similarity=0.136 Sum_probs=77.9
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEE-eecccCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEARE 136 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~ 136 (520)
..+.+||..+++....- .+. ...-.+++.. ++.+++.||.++ .+.+||+.+..-. .+.. ..
T Consensus 555 g~v~lWd~~~~~~~~~~-~~H---~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~-------~~ 618 (793)
T PLN00181 555 GVVQVWDVARSQLVTEM-KEH---EKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKT-------KA 618 (793)
T ss_pred CeEEEEECCCCeEEEEe-cCC---CCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEec-------CC
Confidence 34677787765433211 111 1111222222 456777787653 4778887764422 2210 01
Q ss_pred CceEEEE---CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce--EEEcccCCCCCCCCcceeEEeeCCEEEEEecCCC
Q 010011 137 GHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDG 211 (520)
Q Consensus 137 ~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~--W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~ 211 (520)
...++.. ++.+++.|+. ...+.+||+.+.. ...+.. ....-..+...++..++.|+.++
T Consensus 619 ~v~~v~~~~~~g~~latgs~-----------dg~I~iwD~~~~~~~~~~~~~-----h~~~V~~v~f~~~~~lvs~s~D~ 682 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSA-----------DHKVYYYDLRNPKLPLCTMIG-----HSKTVSYVRFVDSSTLVSSSTDN 682 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeC-----------CCeEEEEECCCCCccceEecC-----CCCCEEEEEEeCCCEEEEEECCC
Confidence 1112211 3567777773 2457888886542 111210 00011122223556667776543
Q ss_pred CCcccCceEEEECCCC----cEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 212 HDYYLSDVHILDTDTL----TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 212 ~~~~~~~i~~yd~~t~----~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
.+..||+... .|..+.... .........+...++.+++.|+.+. .+.+|+....
T Consensus 683 ------~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~D~------~v~iw~~~~~ 740 (793)
T PLN00181 683 ------TLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETN------EVFVYHKAFP 740 (793)
T ss_pred ------EEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeCCC------EEEEEECCCC
Confidence 3667776532 232222100 0011111122233456777777543 3777776543
No 137
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=51.00 E-value=2.9e+02 Score=28.24 Aligned_cols=204 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred cccceeeeeecCCCCCCc----cceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceE
Q 010011 15 VAQQLVSSEISSSGPGKR----WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSC 90 (520)
Q Consensus 15 ~~~~~~~~~~~g~~P~~R----~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~ 90 (520)
.+.......-.|..|-+| ..|.+...+++++|++.== -++.+..|++..+........--.|..--.|-+
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec------CCceEEEEEcccCccccccccccCCCCCcceEE
Q ss_pred EEECCE-EEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE------CCEEEEEeCCCCCCCCCCcc
Q 010011 91 TTVGEN-LYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV------GKRLFIFGGCGKSSNTNDEV 163 (520)
Q Consensus 91 ~~~~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~------~~~lyv~GG~~~~~~~~~~~ 163 (520)
.--+++ +|++. .-+..-++|.||....+.+.++....+|..-.+-.-++- +..||+ .+...
T Consensus 198 FHpn~k~aY~v~---EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYa---------sNRg~ 265 (346)
T COG2706 198 FHPNGKYAYLVN---ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYA---------SNRGH 265 (346)
T ss_pred EcCCCcEEEEEe---ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEE---------ecCCC
Q ss_pred eeceeEEEEcCcceEEEcccCCCCCC-CCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCC
Q 010011 164 YYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP 241 (520)
Q Consensus 164 ~~~~v~~~d~~t~~W~~v~~~~~~p~-~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~ 241 (520)
-.-.++..|+.+.+..-+.....--. ||.+ .....+++++.-+.+++. -.++.-|++|++-+.+.....-|.|
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F--~i~~~g~~Liaa~q~sd~---i~vf~~d~~TG~L~~~~~~~~~p~P 339 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDF--NINPSGRFLIAANQKSDN---ITVFERDKETGRLTLLGRYAVVPEP 339 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccCCcCCccc--eeCCCCCEEEEEccCCCc---EEEEEEcCCCceEEecccccCCCCc
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=50.09 E-value=4e+02 Score=29.61 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=86.6
Q ss_pred CccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe-EEeeeccCCCCCCCCcceEE---EECCEEEEEcCCCCC
Q 010011 31 KRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT-WSQPVIKGSPPTPRDSHSCT---TVGENLYVFGGTDGM 106 (520)
Q Consensus 31 ~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~-W~~l~~~g~~P~~R~~hs~~---~~~~~iyv~GG~~~~ 106 (520)
.+.--++++.++++ ++.+|-.. .-.+|.+.+..+. -+. ...+|..+...+.. ..++++++.-
T Consensus 382 ~~nIs~~aiSPdg~-~Ia~st~~-----~~~iy~L~~~~~vk~~~---v~~~~~~~~~a~~i~ftid~~k~~~~s----- 447 (691)
T KOG2048|consen 382 KENISCAAISPDGN-LIAISTVS-----RTKIYRLQPDPNVKVIN---VDDVPLALLDASAISFTIDKNKLFLVS----- 447 (691)
T ss_pred ccceeeeccCCCCC-EEEEeecc-----ceEEEEeccCcceeEEE---eccchhhhccceeeEEEecCceEEEEe-----
Confidence 34344455556666 33444321 1234554444422 222 23566655444333 2367788775
Q ss_pred CCCCcEEEEECCCCeEEeecccCCC-CCC-CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccC
Q 010011 107 NPLRDLHILDTSSHTWISPSVRGEG-PEA-REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS 184 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~-p~~-r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~ 184 (520)
....+++.++..+.+..++....+- -.+ ...-.....++.|-++++ ...+++||+++.+-+.+...
T Consensus 448 ~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t------------~g~I~v~nl~~~~~~~l~~r 515 (691)
T KOG2048|consen 448 KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST------------RGQIFVYNLETLESHLLKVR 515 (691)
T ss_pred cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec------------cceEEEEEcccceeecchhc
Confidence 2345678888877776654321111 111 122222334678888887 36799999998887766421
Q ss_pred CCCCCCCcceeEEe---eCCEEEEEecCCCCCcccCceEEEECCC---CcEEEeeC
Q 010011 185 GNPPSARDSHTCSS---WKNKIIVIGGEDGHDYYLSDVHILDTDT---LTWKELNT 234 (520)
Q Consensus 185 ~~~p~~r~~h~~~~---~~~~lyv~GG~~~~~~~~~~i~~yd~~t---~~W~~~~~ 234 (520)
+. +..-++.. ..+.+.|.- ..++++.||++. .+|.....
T Consensus 516 ---ln-~~vTa~~~~~~~~~~lvvat-------s~nQv~efdi~~~~l~~ws~~nt 560 (691)
T KOG2048|consen 516 ---LN-IDVTAAAFSPFVRNRLVVAT-------SNNQVFEFDIEARNLTRWSKNNT 560 (691)
T ss_pred ---cC-cceeeeeccccccCcEEEEe-------cCCeEEEEecchhhhhhhhhccc
Confidence 11 22222222 245566542 346789999853 34665544
No 139
>PRK01742 tolB translocation protein TolB; Provisional
Probab=49.30 E-value=3.4e+02 Score=28.54 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=68.9
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~ 189 (520)
..++++|+.+..-+.+. ..+. .........+++.++++... .+ ..++|.+|+.+.....+... ..
T Consensus 228 ~~i~i~dl~tg~~~~l~---~~~g-~~~~~~wSPDG~~La~~~~~-----~g---~~~Iy~~d~~~~~~~~lt~~---~~ 292 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA---SFRG-HNGAPAFSPDGSRLAFASSK-----DG---VLNIYVMGANGGTPSQLTSG---AG 292 (429)
T ss_pred cEEEEEeCCCCceEEEe---cCCC-ccCceeECCCCCEEEEEEec-----CC---cEEEEEEECCCCCeEeeccC---CC
Confidence 46899999887655543 1111 11112222344444433210 11 13589999988877776521 11
Q ss_pred CCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECC-EEEEEecccCCCCccC
Q 010011 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNLYD 268 (520)
Q Consensus 190 ~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~ 268 (520)
. ........+++.+++.....+ ..++|.+|..+..-+.+.. .. . .....-++ .|++.++ +
T Consensus 293 ~-~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~-----~~-~-~~~~SpDG~~ia~~~~--------~ 353 (429)
T PRK01742 293 N-NTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG-----RG-Y-SAQISADGKTLVMING--------D 353 (429)
T ss_pred C-cCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC-----CC-C-CccCCCCCCEEEEEcC--------C
Confidence 1 111122234544444332211 1368888876654443321 01 1 11222243 4444433 3
Q ss_pred cEEEEecCCCcEEEee
Q 010011 269 DLYMIDVDSGLWTKVI 284 (520)
Q Consensus 269 dv~~yd~~~~~W~~l~ 284 (520)
.++++|+.++.+..+.
T Consensus 354 ~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 354 NVVKQDLTSGSTEVLS 369 (429)
T ss_pred CEEEEECCCCCeEEec
Confidence 4888999999988764
No 140
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=48.53 E-value=1.5e+02 Score=27.55 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=46.2
Q ss_pred CCCCCcccCceEEEECCCCcEEEeeCCCC--CCCCCceeEEEEECCE-EEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 209 EDGHDYYLSDVHILDTDTLTWKELNTSGM--VLSPRAGHSTVAFGKN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~W~~~~~~~~--~p~~R~~hs~~~~~~~-iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
.+....-..++|.+|..++.|..+..... ...|. .....-+.. ++|+|...+.-.--..||+|++.++.-..+..
T Consensus 80 ~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 80 PEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred CccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 33333457789999999988887654211 22344 223333444 45555333322234669999999999888876
Q ss_pred C
Q 010011 286 T 286 (520)
Q Consensus 286 ~ 286 (520)
.
T Consensus 158 ~ 158 (200)
T PF15525_consen 158 W 158 (200)
T ss_pred c
Confidence 5
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=47.93 E-value=4.3e+02 Score=29.37 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=63.0
Q ss_pred EEeeCCEEEEEecCCCCCcccCceEEEECCCC-cEEEeeCCCCCCCCCceeEEEE---ECCEEEEEecccCCCCccCcEE
Q 010011 196 CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVA---FGKNLFVFGGFTDSQNLYDDLY 271 (520)
Q Consensus 196 ~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~~~~~~~~p~~R~~hs~~~---~~~~iyv~GG~~~~~~~~~dv~ 271 (520)
+..-++.++.+|-... -.++.+.++-+ +-+.+. ..|..+...+.+. -++++++.- ....+++
T Consensus 389 aiSPdg~~Ia~st~~~-----~~iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le 454 (691)
T KOG2048|consen 389 AISPDGNLIAISTVSR-----TKIYRLQPDPNVKVINVD---DVPLALLDASAISFTIDKNKLFLVS------KNIFSLE 454 (691)
T ss_pred ccCCCCCEEEEeeccc-----eEEEEeccCcceeEEEec---cchhhhccceeeEEEecCceEEEEe------cccceeE
Confidence 3344677777764321 12455544332 222233 3566665555443 256666665 2245588
Q ss_pred EEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecccccccc
Q 010011 272 MIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERK 337 (520)
Q Consensus 272 ~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~ 337 (520)
.++.++.+-..+....+-+... .....+....++.|.+++++ .+++.+++.....+.
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~--~I~~l~~SsdG~yiaa~~t~-------g~I~v~nl~~~~~~~ 511 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCP--SISRLVVSSDGNYIAAISTR-------GQIFVYNLETLESHL 511 (691)
T ss_pred EEEecCcchhhhhccccccCCC--cceeEEEcCCCCEEEEEecc-------ceEEEEEcccceeec
Confidence 8888888877765532221111 11122233667888887743 357777776665433
No 142
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=46.97 E-value=2.1e+02 Score=29.29 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=37.0
Q ss_pred eeCCEEEEEe---cCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE-EECCE--EEEEecccCCCCccCcEE
Q 010011 198 SWKNKIIVIG---GEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKN--LFVFGGFTDSQNLYDDLY 271 (520)
Q Consensus 198 ~~~~~lyv~G---G~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~-~~~~~--iyv~GG~~~~~~~~~dv~ 271 (520)
.-.+.|||.- +..........||.||+++.+-..--. + ....-++. .-+++ +|.+-+.+ .+++
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~---l--~~~~~Si~Vsqd~~P~L~~~~~~~------~~l~ 315 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP---L--EHPIDSIAVSQDDKPLLYALSAGD------GTLD 315 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE---E--EEEESEEEEESSSS-EEEEEETTT------TEEE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe---C--CCccceEEEccCCCcEEEEEcCCC------CeEE
Confidence 3478888862 222223356679999999987433221 1 11111222 23343 55443321 3499
Q ss_pred EEecCCCcEE
Q 010011 272 MIDVDSGLWT 281 (520)
Q Consensus 272 ~yd~~~~~W~ 281 (520)
+||..+++-.
T Consensus 316 v~D~~tGk~~ 325 (342)
T PF06433_consen 316 VYDAATGKLV 325 (342)
T ss_dssp EEETTT--EE
T ss_pred EEeCcCCcEE
Confidence 9999998544
No 143
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.92 E-value=3.4e+02 Score=27.82 Aligned_cols=190 Identities=20% Similarity=0.229 Sum_probs=88.2
Q ss_pred eEEEEECCC--CeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC--eEEeecccCCCCCCCC
Q 010011 61 QVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRGEGPEARE 136 (520)
Q Consensus 61 ~~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~ 136 (520)
.+++||..+ ..|.... .+ . ++..-.++..++.+|+.- ....++++|..+. .|+.-...+ ...+.
T Consensus 122 ~~y~ld~~~G~~~W~~~~-~~--~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~--~~~~~ 189 (370)
T COG1520 122 KLYALDASTGTLVWSRNV-GG--S-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP--LSLSI 189 (370)
T ss_pred eEEEEECCCCcEEEEEec-CC--C-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc--ccccc
Confidence 689999854 5688743 22 1 455555566677777763 2356889998865 487433111 12222
Q ss_pred CceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCc--ceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCc
Q 010011 137 GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDY 214 (520)
Q Consensus 137 ~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t--~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~ 214 (520)
......-++.+|+ |... +...++.+|+.+ ..|+.-........... -...+....+|+-||.-. ..
T Consensus 190 ~~~~~~~~~~vy~-~~~~---------~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~~~~-~~ 257 (370)
T COG1520 190 YGSPAIASGTVYV-GSDG---------YDGILYALNAEDGTLKWSQKVSQTIGRTAIS-TTPAVDGGPVYVDGGVYA-GS 257 (370)
T ss_pred ccCceeecceEEE-ecCC---------CcceEEEEEccCCcEeeeeeeecccCccccc-ccccccCceEEECCcEEE-Ee
Confidence 2222334455555 3311 122588899864 46774211101110000 011222334444333100 00
Q ss_pred ccCceEEEECCC--CcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEec
Q 010011 215 YLSDVHILDTDT--LTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 215 ~~~~i~~yd~~t--~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
....+.++|..+ ..|+.-........+.........++++|+........ ....+++++.
T Consensus 258 ~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~-~~~~~~~~~~ 319 (370)
T COG1520 258 YGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGR-GSGSLYALAD 319 (370)
T ss_pred cCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccc-cccceEEEec
Confidence 223377777664 44776543000111112122222356677665433211 3455677765
No 144
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=45.81 E-value=4e+02 Score=28.38 Aligned_cols=172 Identities=20% Similarity=0.232 Sum_probs=85.4
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC-
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH- 120 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~- 120 (520)
.++.++++|+-+. .+-.+|..+..- +....+.--.-|. .++...+++|++.||+++. +-.||+.+.
T Consensus 121 ~d~t~l~s~sDd~------v~k~~d~s~a~v-~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg~-----vrl~DtR~~~ 187 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK------VVKYWDLSTAYV-QAELSGHTDYVRC-GDISPANDHIVVTGSYDGK-----VRLWDTRSLT 187 (487)
T ss_pred cCCeEEEecCCCc------eEEEEEcCCcEE-EEEecCCcceeEe-eccccCCCeEEEecCCCce-----EEEEEeccCC
Confidence 4667888876432 233345555542 4443444333332 3344557899999999865 556666655
Q ss_pred eEEeecccCCCCCCCCCceEEEE-C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcce----
Q 010011 121 TWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH---- 194 (520)
Q Consensus 121 ~W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h---- 194 (520)
.|.. +. +...|.. .++.. + ..|...|| |.+-++|+.+.. .++..+..|
T Consensus 188 ~~v~-el--nhg~pVe--~vl~lpsgs~iasAgG-------------n~vkVWDl~~G~--------qll~~~~~H~KtV 241 (487)
T KOG0310|consen 188 SRVV-EL--NHGCPVE--SVLALPSGSLIASAGG-------------NSVKVWDLTTGG--------QLLTSMFNHNKTV 241 (487)
T ss_pred ceeE-Ee--cCCCcee--eEEEcCCCCEEEEcCC-------------CeEEEEEecCCc--------eehhhhhcccceE
Confidence 4532 11 1111111 23333 2 34555666 445555554322 222222222
Q ss_pred eEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccC
Q 010011 195 TCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (520)
Q Consensus 195 ~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 262 (520)
+|..+ ++.-++-||.++. +-+||.. .|..+-... .|.|-. ..++.-++.-+++|+.++
T Consensus 242 TcL~l~s~~~rLlS~sLD~~------VKVfd~t--~~Kvv~s~~-~~~pvL-siavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRH------VKVFDTT--NYKVVHSWK-YPGPVL-SIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEEEeecCCceEeecccccc------eEEEEcc--ceEEEEeee-ccccee-eEEecCCCceEEEecccc
Confidence 22222 4567777776643 6678843 355554311 122221 123344778888887654
No 145
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=45.65 E-value=2.9e+02 Score=26.65 Aligned_cols=228 Identities=18% Similarity=0.247 Sum_probs=102.2
Q ss_pred CCeEEeeeccCCCC--CCCCcceEEEE--CCEEEEEc--CCCCCC--CCCcEEEEECC-CCeEEeecccC-C----CCCC
Q 010011 69 NQTWSQPVIKGSPP--TPRDSHSCTTV--GENLYVFG--GTDGMN--PLRDLHILDTS-SHTWISPSVRG-E----GPEA 134 (520)
Q Consensus 69 t~~W~~l~~~g~~P--~~R~~hs~~~~--~~~iyv~G--G~~~~~--~~~~~~~yd~~-t~~W~~~~~~g-~----~p~~ 134 (520)
..+|..+......+ ..+....+... +++|+++- +..... ...-.+....+ -.+|+...... . .+.+
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGP 108 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEEC
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceecc
Confidence 36799866433333 22333333333 78888885 222111 11112344444 46898764210 0 1111
Q ss_pred CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEc-CcceEEEcccCCCCCCCCcceeEEe-e-CCEEEEEecCCC
Q 010011 135 REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT-ETFVWKRATTSGNPPSARDSHTCSS-W-KNKIIVIGGEDG 211 (520)
Q Consensus 135 r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~-~t~~W~~v~~~~~~p~~r~~h~~~~-~-~~~lyv~GG~~~ 211 (520)
-........++++++. .+.. .... ......+.. .-.+|+...... ..........+ . ++.|+++--..
T Consensus 109 ~~~~~i~~~~G~l~~~-~~~~----~~~~-~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~- 179 (275)
T PF13088_consen 109 GRGPPIQLPDGRLIAP-YYHE----SGGS-FSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE- 179 (275)
T ss_dssp SEEEEEEECTTEEEEE-EEEE----SSCE-EEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-
T ss_pred ceeeeeEecCCCEEEE-Eeec----cccC-cceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-
Confidence 1122234447777776 2111 0111 223333444 456798886321 11122222222 2 67888775432
Q ss_pred CCcccCceEEEECC-CCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCC
Q 010011 212 HDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG 289 (520)
Q Consensus 212 ~~~~~~~i~~yd~~-t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~ 289 (520)
... .-.+.+... ..+|+...... .|.+.....++.. +++++++..... ....-.+++-.-...+|..+......
T Consensus 180 ~~~--~~~~~~S~D~G~TWs~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~-~r~~l~l~~S~D~g~tW~~~~~i~~~ 255 (275)
T PF13088_consen 180 GND--DIYISRSTDGGRTWSPPQPTN-LPNPNSSISLVRLSDGRLLLVYNNPD-GRSNLSLYVSEDGGKTWSRPKTIDDG 255 (275)
T ss_dssp SST--EEEEEEESSTTSS-EEEEEEE-CSSCCEEEEEEECTTSEEEEEEECSS-TSEEEEEEEECTTCEEEEEEEEEEEE
T ss_pred CCC--cEEEEEECCCCCcCCCceecc-cCcccCCceEEEcCCCCEEEEEECCC-CCCceEEEEEeCCCCcCCccEEEeCC
Confidence 111 223333333 56799865322 4555555555553 457777777321 11112233333446789876554333
Q ss_pred CCCceeeeeeeeccccCCEEEE
Q 010011 290 PSARFSVAGDCLDPLKGGVLVF 311 (520)
Q Consensus 290 p~~r~~~~~~~~~~~~~~~l~v 311 (520)
+...++....+ ...++.|+|
T Consensus 256 ~~~~~~Y~~~~--~~~dg~l~i 275 (275)
T PF13088_consen 256 PNGDSGYPSLT--QLPDGKLYI 275 (275)
T ss_dssp E-CCEEEEEEE--EEETTEEEE
T ss_pred CCCcEECCeeE--EeCCCcCCC
Confidence 42233333222 244667765
No 146
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=44.22 E-value=3.5e+02 Score=27.24 Aligned_cols=214 Identities=14% Similarity=0.191 Sum_probs=91.9
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
++..||.|.. .-++.-.-.-.+|.+++..... |-..+.+..+ ++.++++|.. ..+|+-.-.-.+
T Consensus 71 ~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~l--pgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~t 135 (302)
T PF14870_consen 71 GNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKL--PGSPFGITALGDGSAELAGDR------GAIYRTTDGGKT 135 (302)
T ss_dssp TTEEEEEEET-------TEEEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEETT--------EEEESSTTSS
T ss_pred CCceEEEcCC-------ceEEEecCCCCCcEEeecCCCC--CCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCC
Confidence 3457777631 1233333445789997643233 3333444444 5567777642 345555445578
Q ss_pred EEeecccCCCCCCCCCceEE-EECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-e
Q 010011 122 WISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-W 199 (520)
Q Consensus 122 W~~~~~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~ 199 (520)
|+.+... ... .-.... .-++++++++..+ +-+...|+-...|+... .+..|.-.++.. -
T Consensus 136 W~~~~~~---~~g-s~~~~~r~~dG~~vavs~~G-----------~~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~ 196 (302)
T PF14870_consen 136 WQAVVSE---TSG-SINDITRSSDGRYVAVSSRG-----------NFYSSWDPGQTTWQPHN----RNSSRRIQSMGFSP 196 (302)
T ss_dssp EEEEE-S--------EEEEEE-TTS-EEEEETTS-----------SEEEEE-TT-SS-EEEE------SSS-EEEEEE-T
T ss_pred eeEcccC---Ccc-eeEeEEECCCCcEEEEECcc-----------cEEEEecCCCccceEEc----cCccceehhceecC
Confidence 9876521 111 111122 2245666665531 11234466667798886 333444444443 3
Q ss_pred CCEEEEEecCCCCCcccCceEEEE--CCCCcEEEeeCCCCCCCCCcee--E-EEEE-CCEEEEEecccCCCCccCcEEEE
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILD--TDTLTWKELNTSGMVLSPRAGH--S-TVAF-GKNLFVFGGFTDSQNLYDDLYMI 273 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd--~~t~~W~~~~~~~~~p~~R~~h--s-~~~~-~~~iyv~GG~~~~~~~~~dv~~y 273 (520)
++.|++.. .. . .+..=+ -...+|.+.. .|....++ - ++.. ++.+++.||.. .+++=
T Consensus 197 ~~~lw~~~-~G-g-----~~~~s~~~~~~~~w~~~~----~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~l~~S 258 (302)
T PF14870_consen 197 DGNLWMLA-RG-G-----QIQFSDDPDDGETWSEPI----IPIKTNGYGILDLAYRPPNEIWAVGGSG-------TLLVS 258 (302)
T ss_dssp TS-EEEEE-TT-T-----EEEEEE-TTEEEEE---B-----TTSS--S-EEEEEESSSS-EEEEESTT--------EEEE
T ss_pred CCCEEEEe-CC-c-----EEEEccCCCCcccccccc----CCcccCceeeEEEEecCCCCEEEEeCCc-------cEEEe
Confidence 66777764 22 1 133333 2455677743 23323333 2 2333 47899998863 25555
Q ss_pred ecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEc
Q 010011 274 DVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (520)
Q Consensus 274 d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (520)
.-.-++|++.......|..-+... + ...++-+++|
T Consensus 259 ~DgGktW~~~~~~~~~~~n~~~i~---f--~~~~~gf~lG 293 (302)
T PF14870_consen 259 TDGGKTWQKDRVGENVPSNLYRIV---F--VNPDKGFVLG 293 (302)
T ss_dssp SSTTSS-EE-GGGTTSSS---EEE---E--EETTEEEEE-
T ss_pred CCCCccceECccccCCCCceEEEE---E--cCCCceEEEC
Confidence 556679999876544444333322 2 2346777777
No 147
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.97 E-value=3.1e+02 Score=26.61 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEEC--CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG--ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
..+.++|..+++-.+.= .|.. ..--++.++ ..+.+-|+++ ..+-++|..+++.+.++ -+...+.+
T Consensus 81 k~v~vwDV~TGkv~Rr~-rgH~----aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQ---ildea~D~ 147 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-RGHL----AQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQ---ILDEAKDG 147 (307)
T ss_pred ceEEEEEcccCeeeeec-cccc----ceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccc---hhhhhcCc
Confidence 45888999887644310 1110 111222333 3577777765 45788899998888777 45667788
Q ss_pred ceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccC
Q 010011 138 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLS 217 (520)
Q Consensus 138 hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~ 217 (520)
-.++.+.+..+|.|..+ -.+-.||+...+-..- .+..|.. ..+...++...+.|-.+ .
T Consensus 148 V~Si~v~~heIvaGS~D-----------GtvRtydiR~G~l~sD----y~g~pit-~vs~s~d~nc~La~~l~------s 205 (307)
T KOG0316|consen 148 VSSIDVAEHEIVAGSVD-----------GTVRTYDIRKGTLSSD----YFGHPIT-SVSFSKDGNCSLASSLD------S 205 (307)
T ss_pred eeEEEecccEEEeeccC-----------CcEEEEEeecceeehh----hcCCcce-eEEecCCCCEEEEeecc------c
Confidence 88888888888877632 2355677765443211 1111111 11222244455554433 2
Q ss_pred ceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 218 ~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.+..+|-+|++--..- .| ....-+.--++..+..-.|++|..+. .+|+||+...+
T Consensus 206 tlrLlDk~tGklL~sY-kG-hkn~eykldc~l~qsdthV~sgSEDG-----~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSY-KG-HKNMEYKLDCCLNQSDTHVFSGSEDG-----KVYFWDLVDET 260 (307)
T ss_pred eeeecccchhHHHHHh-cc-cccceeeeeeeecccceeEEeccCCc-----eEEEEEeccce
Confidence 3556666654321100 01 01111222244555556788887653 38999988764
No 148
>PRK01029 tolB translocation protein TolB; Provisional
Probab=43.85 E-value=4.2e+02 Score=28.00 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=36.9
Q ss_pred CceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 217 ~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
.+++++|+++.+.+.+... +. ........-+++.+++-..... ...+|.+|+.++..+.+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~---~~-~~~~p~wSpDG~~L~f~~~~~g---~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS---PE-NKESPSWAIDSLHLVYSAGNSN---ESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC---CC-CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeec
Confidence 5799999999998877542 11 1111222334444443322211 2569999999998887753
No 149
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=43.81 E-value=4.2e+02 Score=28.04 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=45.8
Q ss_pred EcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 49 FGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 49 ~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
.|-|.....+.+.+|++|-.-+.-.++ +|-.|..|. +++-.+++.+|++- -...+-+++.|+.+-
T Consensus 395 ~~dW~~~de~~N~vYilDe~lnvvGkl--tGl~~gERI-YAvRf~gdv~yiVT----frqtDPlfviDlsNP 459 (603)
T COG4880 395 LSDWTSEDEPVNAVYILDENLNVVGKL--TGLAPGERI-YAVRFVGDVLYIVT----FRQTDPLFVIDLSNP 459 (603)
T ss_pred ecccccCCCccceeEEEcCCCcEEEEE--eccCCCceE-EEEEEeCceEEEEE----EeccCceEEEEcCCC
Confidence 344544556789999999888877776 456666665 45567789999885 234567888888754
No 150
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=43.69 E-value=5.6e+02 Score=29.48 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=31.8
Q ss_pred CcccCceEEEECCCCc--EEEeeCCCC-----CCCCCceeEEEEECCE---EEEEecccCCCCccCcEEEEecCCCc
Q 010011 213 DYYLSDVHILDTDTLT--WKELNTSGM-----VLSPRAGHSTVAFGKN---LFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 213 ~~~~~~i~~yd~~t~~--W~~~~~~~~-----~p~~R~~hs~~~~~~~---iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
+.+.+.+..+|++|.+ |..-....+ .+..-........+++ +++.+..++ .+|++|.++++
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G------~~~vlDr~tG~ 480 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG------QIYVLDRRTGE 480 (764)
T ss_pred ccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCC------EEEEEECCCCC
Confidence 3467889999998765 665332110 1111111111111442 555565432 48899988774
No 151
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.96 E-value=3.7e+02 Score=27.18 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=19.5
Q ss_pred CCcCCCcccceeeeEeeeecCc-----ceEEEEeEcCce
Q 010011 388 NNFPLNEGKKTFQAKVTESFPL-----GYTIETTIDGKP 421 (520)
Q Consensus 388 ~~~~~~~g~k~f~~~~~~~~~~-----~~~~~~~~~~~~ 421 (520)
.+|.+| ++||.++++| -|-..|+=||+.
T Consensus 243 ~~~~AH------~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 243 TEFLAH------ENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred eeeecc------hhheeeeEEEecCCceEEEEeccCceE
Confidence 456655 5788887744 377888888864
No 152
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=42.89 E-value=32 Score=26.61 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=25.0
Q ss_pred eeeeEeeeecCcceEEEEeEcCceeeeeee
Q 010011 398 TFQAKVTESFPLGYTIETTIDGKPLRGILF 427 (520)
Q Consensus 398 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (520)
..++.|..+-+|||.++.-|+| +.|+|.
T Consensus 7 ~v~g~V~si~d~G~~v~~g~~g--v~Gfl~ 34 (74)
T cd05694 7 VLSGCVSSVEDHGYILDIGIPG--TTGFLP 34 (74)
T ss_pred EEEEEEEEEeCCEEEEEeCCCC--cEEEEE
Confidence 5889999999999999988887 789885
No 153
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=42.73 E-value=4.2e+02 Score=27.79 Aligned_cols=216 Identities=11% Similarity=0.111 Sum_probs=101.3
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEEC-CEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
+..|++|-. ..++.=+-.-.+|.++.....+|.. .+....++ +.++++|.. ..+++-+-.-.+|
T Consensus 147 ~~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW 211 (398)
T PLN00033 147 KEGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------GAIYVTSNAGRNW 211 (398)
T ss_pred CEEEEEcCc-------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc------ceEEEECCCCCCc
Confidence 457777532 1233333345789987643233333 33344444 457777732 2355555455789
Q ss_pred EeecccC-CCCCCC--------------CCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc-eEEEcccCC
Q 010011 123 ISPSVRG-EGPEAR--------------EGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSG 185 (520)
Q Consensus 123 ~~~~~~g-~~p~~r--------------~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~-~W~~v~~~~ 185 (520)
+...... +.+..+ ...++.. .++.++++|-. -.+++-...-. .|+.+..
T Consensus 212 ~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------------G~~~~s~d~G~~~W~~~~~-- 277 (398)
T PLN00033 212 KAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------------GNFYLTWEPGQPYWQPHNR-- 277 (398)
T ss_pred eEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC------------ccEEEecCCCCcceEEecC--
Confidence 8752110 001110 0111121 23456666552 12333333333 4898862
Q ss_pred CCCCCCcceeEE-eeCCEEEEEecCCCCCcccCceEEEECCCC-----cEEEeeCCCCCCCCCceeE-EEEE-CCEEEEE
Q 010011 186 NPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTL-----TWKELNTSGMVLSPRAGHS-TVAF-GKNLFVF 257 (520)
Q Consensus 186 ~~p~~r~~h~~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-----~W~~~~~~~~~p~~R~~hs-~~~~-~~~iyv~ 257 (520)
+..+...++. ..++.+++.|... .++.-+.... .|.++.. +..+.... +... ++.+++.
T Consensus 278 --~~~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~ 344 (398)
T PLN00033 278 --ASARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGYRSKKEAWAA 344 (398)
T ss_pred --CCccceeeeeEcCCCCEEEEeCCc-------eEEEecCCCCcccccceeeccc----CCCCcceEEEEEcCCCcEEEE
Confidence 3333333333 3467888876432 1333333333 3454432 22333333 3333 5678888
Q ss_pred ecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEc
Q 010011 258 GGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (520)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (520)
|... -+++-...-.+|+.+......+..-+. +.+ ..+++.|+.|
T Consensus 345 G~~G-------~v~~s~D~G~tW~~~~~~~~~~~~ly~---v~f--~~~~~g~~~G 388 (398)
T PLN00033 345 GGSG-------ILLRSTDGGKSWKRDKGADNIAANLYS---VKF--FDDKKGFVLG 388 (398)
T ss_pred ECCC-------cEEEeCCCCcceeEccccCCCCcceeE---EEE--cCCCceEEEe
Confidence 8642 255555567799997643222323321 222 2356777766
No 154
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=41.26 E-value=3.6e+02 Score=26.55 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=96.0
Q ss_pred EEEECCEEE---EEcCCCCCCCCCcEEEEECCC-CeEEeecccCC----CCC-CCCCceEEEECCEEEEEeCCCCCCCCC
Q 010011 90 CTTVGENLY---VFGGTDGMNPLRDLHILDTSS-HTWISPSVRGE----GPE-AREGHSAALVGKRLFIFGGCGKSSNTN 160 (520)
Q Consensus 90 ~~~~~~~iy---v~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~g~----~p~-~r~~hs~~~~~~~lyv~GG~~~~~~~~ 160 (520)
+.++++.|| +.|-+.+...+.-.|+=.-+. ++|+..+...+ -|. .-...+|.+++++||..=-... -
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~----~ 96 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRT----V 96 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEE----T
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehh----h
Confidence 345566655 334445566666667666543 67876543322 122 2234567889999987633110 0
Q ss_pred CcceeceeEEEE---cCcceEEEcccCCCCCC-------CCcceeEEeeCCEEEEEecCCCCCcccCc-eEEEEC-----
Q 010011 161 DEVYYNDLYILN---TETFVWKRATTSGNPPS-------ARDSHTCSSWKNKIIVIGGEDGHDYYLSD-VHILDT----- 224 (520)
Q Consensus 161 ~~~~~~~v~~~d---~~t~~W~~v~~~~~~p~-------~r~~h~~~~~~~~lyv~GG~~~~~~~~~~-i~~yd~----- 224 (520)
....+.....++ .....|++.... ..|. .-.-|+.+.+++.=|.+|=.+++-....- +..+..
T Consensus 97 a~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp 175 (367)
T PF12217_consen 97 ASNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASP 175 (367)
T ss_dssp TT--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-T
T ss_pred hhhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCC
Confidence 111122233333 356778876422 2222 44567778887777788755444222111 222211
Q ss_pred CCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccc
Q 010011 225 DTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPL 304 (520)
Q Consensus 225 ~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~ 304 (520)
....=+.+.. +....-...+.-..++.+|+.--.+.....-+.+.+-+.....|+.+......-....-++ .
T Consensus 176 ~~~vrr~i~s--ey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFa------k 247 (367)
T PF12217_consen 176 GVFVRRIIPS--EYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFA------K 247 (367)
T ss_dssp T--EEEE--G--GG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EE------E
T ss_pred cceeeeechh--hhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCce------e
Confidence 1111122221 1222223344557899999876544434455678888888999999875432211111111 3
Q ss_pred cCCEEEEEcccCC
Q 010011 305 KGGVLVFIGGCNK 317 (520)
Q Consensus 305 ~~~~l~v~GG~~~ 317 (520)
.++.||+||-...
T Consensus 248 vgD~l~mFgsERA 260 (367)
T PF12217_consen 248 VGDVLYMFGSERA 260 (367)
T ss_dssp ETTEEEEEEE-SS
T ss_pred eCCEEEEEecccc
Confidence 4889999996543
No 155
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=40.94 E-value=4.8e+02 Score=27.94 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=97.0
Q ss_pred cCeEEEEECCCCeEEeeeccCCCCCCCCcc------------eEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEee
Q 010011 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSH------------SCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISP 125 (520)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~h------------s~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 125 (520)
-.++|.|||.+..-+++.+. +|..|..- -.+.+ ++.|-++. ....+++++..+--.++
T Consensus 286 ~GdIylydP~td~lekldI~--lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv 356 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIG--LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQV 356 (668)
T ss_pred CCcEEEeCCCcCcceeeecC--CccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEc
Confidence 35799999999999998752 23222111 01122 22222221 12455555443333333
Q ss_pred cccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEE
Q 010011 126 SVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (520)
Q Consensus 126 ~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv 205 (520)
. ....-|+.+ ...++.-.++|-.+ -..+-+||..+..-+++. .+..+.....+..+++.++
T Consensus 357 ~---~~~~VrY~r--~~~~~e~~vigt~d----------gD~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 357 G---KKGGVRYRR--IQVDPEGDVIGTND----------GDKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred C---CCCceEEEE--EccCCcceEEeccC----------CceEEEEecCCceEEEee----CCccceEEEEEcCCCcEEE
Confidence 2 111123322 22334466666532 135778888888877775 3444444444445667666
Q ss_pred EecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeE--EEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 206 IGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS--TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs--~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
.+.. .-++|.+|++++.-+.+... |.+.- .+.+.+.-++.-++- .+-....+.+||+..++-..+
T Consensus 418 vaNd------r~el~vididngnv~~idkS------~~~lItdf~~~~nsr~iAYafP-~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 418 VAND------RFELWVIDIDNGNVRLIDKS------EYGLITDFDWHPNSRWIAYAFP-EGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEcC------ceEEEEEEecCCCeeEeccc------ccceeEEEEEcCCceeEEEecC-cceeeeeEEEEecCCCeEEEe
Confidence 6432 23599999999988876541 12111 223334333333332 233455688888888765555
Q ss_pred ee
Q 010011 284 IT 285 (520)
Q Consensus 284 ~~ 285 (520)
.+
T Consensus 485 TT 486 (668)
T COG4946 485 TT 486 (668)
T ss_pred cC
Confidence 43
No 156
>PRK10115 protease 2; Provisional
Probab=40.46 E-value=5.9e+02 Score=28.83 Aligned_cols=197 Identities=8% Similarity=-0.019 Sum_probs=91.6
Q ss_pred cCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCC-CCCCcEEEEECCCCeEEeecccCCCCCCCC
Q 010011 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGM-NPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (520)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 136 (520)
...+++.|+.++.... ..++..+ .+.+-. +++-+++.-.+.. ..-.++|++++.|..-....+... +....
T Consensus 152 ~~~l~v~d~~tg~~l~----~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e-~~~~~ 224 (686)
T PRK10115 152 QYGIRFRNLETGNWYP----ELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE-KDDTF 224 (686)
T ss_pred EEEEEEEECCCCCCCC----ccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee-CCCCE
Confidence 3457777777663211 0111112 223333 4443333333322 234789999998874321111001 11122
Q ss_pred CceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEc--CcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCC
Q 010011 137 GHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNT--ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHD 213 (520)
Q Consensus 137 ~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~--~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~ 213 (520)
....... +++..++.... ...+.++.|+. .+..|..+. ..+. .........++.+|+.--.+..
T Consensus 225 ~~~~~~s~d~~~l~i~~~~--------~~~~~~~l~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~ly~~tn~~~~- 291 (686)
T PRK10115 225 YVSLHKTTSKHYVVIHLAS--------ATTSEVLLLDAELADAEPFVFL---PRRK-DHEYSLDHYQHRFYLRSNRHGK- 291 (686)
T ss_pred EEEEEEcCCCCEEEEEEEC--------CccccEEEEECcCCCCCceEEE---ECCC-CCEEEEEeCCCEEEEEEcCCCC-
Confidence 2222223 34333344321 12355777773 334443332 1111 1222333446788887544322
Q ss_pred cccCceEEEECC-CCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEee
Q 010011 214 YYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 214 ~~~~~i~~yd~~-t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
...+...++. ..+|+.+-... ..+.--.....++.+++..-... ...++++|..+.....+.
T Consensus 292 --~~~l~~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 292 --NFGLYRTRVRDEQQWEELIPPR---ENIMLEGFTLFTDWLVVEERQRG----LTSLRQINRKTREVIGIA 354 (686)
T ss_pred --CceEEEecCCCcccCeEEECCC---CCCEEEEEEEECCEEEEEEEeCC----EEEEEEEcCCCCceEEec
Confidence 2346777776 67899887521 12222234445777766654322 344888887666655553
No 157
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=39.94 E-value=66 Score=21.19 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=16.6
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
.+.+..+++||+.+. -..++++|+.|
T Consensus 15 ~~~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC------CCEEEEEeCCC
Confidence 444667888888765 35789998764
No 158
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.61 E-value=4.1e+02 Score=25.84 Aligned_cols=91 Identities=14% Similarity=0.268 Sum_probs=60.6
Q ss_pred ceeEEEEcCcceEEEcccCCCCCCCCccee----EEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCC
Q 010011 166 NDLYILNTETFVWKRATTSGNPPSARDSHT----CSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 239 (520)
Q Consensus 166 ~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~----~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p 239 (520)
.-++.+|..|.+--+- -.+|. .+.+ +..+++-|+++. .+-.+|..+...+.++. +.
T Consensus 81 k~v~vwDV~TGkv~Rr---------~rgH~aqVNtV~fNeesSVv~SgsfD~------s~r~wDCRS~s~ePiQi---ld 142 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR---------FRGHLAQVNTVRFNEESSVVASGSFDS------SVRLWDCRSRSFEPIQI---LD 142 (307)
T ss_pred ceEEEEEcccCeeeee---------cccccceeeEEEecCcceEEEeccccc------eeEEEEcccCCCCccch---hh
Confidence 4577888887652211 11222 2223 345677777653 47788999888888876 66
Q ss_pred CCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcE
Q 010011 240 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 240 ~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
..+-+-+.+.+.+..+|.|-.++ .+..||+..++-
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DG------tvRtydiR~G~l 177 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDG------TVRTYDIRKGTL 177 (307)
T ss_pred hhcCceeEEEecccEEEeeccCC------cEEEEEeeccee
Confidence 77888888888888877766543 378999888764
No 159
>PRK10115 protease 2; Provisional
Probab=36.35 E-value=6.8e+02 Score=28.34 Aligned_cols=220 Identities=11% Similarity=0.054 Sum_probs=104.8
Q ss_pred EEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEE
Q 010011 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~ 114 (520)
..+-..+++.||+. -.........++|++++.+..-....+-.. +......+.... +++..++.... ...+.++.
T Consensus 176 ~~~w~~D~~~~~y~-~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~--~~~~~~~l 251 (686)
T PRK10115 176 SFVWANDSWTFYYV-RKHPVTLLPYQVWRHTIGTPASQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLAS--ATTSEVLL 251 (686)
T ss_pred EEEEeeCCCEEEEE-EecCCCCCCCEEEEEECCCChhHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEEC--CccccEEE
Confidence 33344456555543 332221244789999998873322111111 111222222223 33322343322 23357888
Q ss_pred EEC--CCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcC-cceEEEcccCCCCCCCC
Q 010011 115 LDT--SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNPPSAR 191 (520)
Q Consensus 115 yd~--~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~-t~~W~~v~~~~~~p~~r 191 (520)
|+. .+..|..+. +.+.. ........++.+|+.--.+ .....+...++. +..|+.+-.. ...+
T Consensus 252 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~ly~~tn~~--------~~~~~l~~~~~~~~~~~~~l~~~---~~~~ 316 (686)
T PRK10115 252 LDAELADAEPFVFL---PRRKD-HEYSLDHYQHRFYLRSNRH--------GKNFGLYRTRVRDEQQWEELIPP---RENI 316 (686)
T ss_pred EECcCCCCCceEEE---ECCCC-CEEEEEeCCCEEEEEEcCC--------CCCceEEEecCCCcccCeEEECC---CCCC
Confidence 884 334443222 11111 1122233457888874421 112336666776 5789888522 1122
Q ss_pred cceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE---EC-CEE-EEEecccCCCCc
Q 010011 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA---FG-KNL-FVFGGFTDSQNL 266 (520)
Q Consensus 192 ~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~---~~-~~i-yv~GG~~~~~~~ 266 (520)
.--.+...++.|++..-.++ ...++.+|..+.....+.. +.+........ .+ +.+ +.+.+.. .
T Consensus 317 ~i~~~~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ss~~----~ 384 (686)
T PRK10115 317 MLEGFTLFTDWLVVEERQRG----LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGYSSMT----T 384 (686)
T ss_pred EEEEEEEECCEEEEEEEeCC----EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEEecCC----C
Confidence 22234445777777654332 2458888876665555431 22222211111 11 233 3333332 2
Q ss_pred cCcEEEEecCCCcEEEeeeC
Q 010011 267 YDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 267 ~~dv~~yd~~~~~W~~l~~~ 286 (520)
..++|.||+.+.+|+.+...
T Consensus 385 P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 385 PDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred CCEEEEEECCCCcEEEEEec
Confidence 46799999999999887643
No 160
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.17 E-value=3.2e+02 Score=26.73 Aligned_cols=121 Identities=20% Similarity=0.285 Sum_probs=65.9
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeee-c------------cCCCCCCCCcceEEEE
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-I------------KGSPPTPRDSHSCTTV 93 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~-~------------~g~~P~~R~~hs~~~~ 93 (520)
..|.+...|..+.- -+=++-||++.. -.+|.||- .+|..-. . .+..-.++..-+.+.-
T Consensus 161 ~~~g~~~~~~~~~~---~krlvSgGcDn~----VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAK---VKRLVSGGCDNL----VKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred CCCccccccCcccc---cceeeccCCccc----eeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 34444445554432 134678887532 34566654 4665311 0 1122234444444455
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
+++++|+ .-+....+|+..-.. +.|.+.+..+-...++-|-|-|| .|.+.++-.
T Consensus 232 Dg~viIw-------------t~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~G------------dNkvtlwke 285 (299)
T KOG1332|consen 232 DGTVIIW-------------TKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGG------------DNKVTLWKE 285 (299)
T ss_pred CCcEEEE-------------EecCccCcccccccc-cCCcceEEEEEeccccEEEEecC------------CcEEEEEEe
Confidence 5555554 333445678643221 46677776666667777888888 355666665
Q ss_pred Cc-ceEEEcc
Q 010011 174 ET-FVWKRAT 182 (520)
Q Consensus 174 ~t-~~W~~v~ 182 (520)
.. .+|+++.
T Consensus 286 ~~~Gkw~~v~ 295 (299)
T KOG1332|consen 286 NVDGKWEEVG 295 (299)
T ss_pred CCCCcEEEcc
Confidence 54 5999886
No 161
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.97 E-value=5.6e+02 Score=26.94 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=83.3
Q ss_pred eEEEEECCCCeEEeeeccCCCCCC-CCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCC---CeEEeecccCCCCCC
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSS---HTWISPSVRGEGPEA 134 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t---~~W~~~~~~g~~p~~ 134 (520)
.++..|..++.-... .|.. -..-++++. ++.=+|.|+.+ ..+..+|++. ..|+-+.. |
T Consensus 292 ~~~lwDv~tgd~~~~-----y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r~i~~wdlDgn~~~~W~gvr~------~ 355 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHL-----YPSGLGFSVSSCAWCPDGFRFVTGSPD-----RTIIMWDLDGNILGNWEGVRD------P 355 (519)
T ss_pred heeeccCCcchhhhh-----cccCcCCCcceeEEccCCceeEecCCC-----CcEEEecCCcchhhccccccc------c
Confidence 356667666654442 2222 111222222 66778888765 4577777765 45865441 3
Q ss_pred CC-CceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCC
Q 010011 135 RE-GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGH 212 (520)
Q Consensus 135 r~-~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~ 212 (520)
+- .-+++..+..+++.+- ...+..|+.++..-..+-.. -.+ .++.+. -++++.+..=
T Consensus 356 ~v~dlait~Dgk~vl~v~~------------d~~i~l~~~e~~~dr~lise---~~~--its~~iS~d~k~~LvnL---- 414 (519)
T KOG0293|consen 356 KVHDLAITYDGKYVLLVTV------------DKKIRLYNREARVDRGLISE---EQP--ITSFSISKDGKLALVNL---- 414 (519)
T ss_pred eeEEEEEcCCCcEEEEEec------------ccceeeechhhhhhhccccc---cCc--eeEEEEcCCCcEEEEEc----
Confidence 32 3333344556666652 24466677666554433211 111 122222 2556655532
Q ss_pred CcccCceEEEECCCCcEEEeeC-CCCCCCCCce-eEEEEECCEEEEEecccCCCCccCcEEEEecCCCcE
Q 010011 213 DYYLSDVHILDTDTLTWKELNT-SGMVLSPRAG-HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 213 ~~~~~~i~~yd~~t~~W~~~~~-~~~~p~~R~~-hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
....++.+|.+ .|..+.. .|. ...++- ++|..-.+.-||..|..+ ..+|+++..++.-
T Consensus 415 --~~qei~LWDl~--e~~lv~kY~Gh-kq~~fiIrSCFgg~~~~fiaSGSED-----~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 415 --QDQEIHLWDLE--ENKLVRKYFGH-KQGHFIIRSCFGGGNDKFIASGSED-----SKVYIWHRISGKL 474 (519)
T ss_pred --ccCeeEEeecc--hhhHHHHhhcc-cccceEEEeccCCCCcceEEecCCC-----ceEEEEEccCCce
Confidence 23457888887 3444332 111 111111 122222343555555544 3488888777653
No 162
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=34.19 E-value=5.6e+02 Score=26.68 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=56.5
Q ss_pred CCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecc--cCCCCCCC--CCceEEEEC
Q 010011 69 NQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSV--RGEGPEAR--EGHSAALVG 144 (520)
Q Consensus 69 t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~--~g~~p~~r--~~hs~~~~~ 144 (520)
.+.|..+. . ..-..--++..++++|++.- ..+++.++..- .-.++.+ .+.+...+ ...-.+...
T Consensus 189 ~~~Wt~l~---~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~ 256 (373)
T PLN03215 189 GNVLKALK---Q--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECC 256 (373)
T ss_pred CCeeeEcc---C--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEEC
Confidence 48999875 2 22345677888999999831 24577777431 1111110 01111111 122345556
Q ss_pred CEEEEEeCCCCCCCCC--------CcceeceeEEEEcCcceEEEcccCC
Q 010011 145 KRLFIFGGCGKSSNTN--------DEVYYNDLYILNTETFVWKRATTSG 185 (520)
Q Consensus 145 ~~lyv~GG~~~~~~~~--------~~~~~~~v~~~d~~t~~W~~v~~~~ 185 (520)
+.|+++..+....... .....-.++++|.+..+|.++...+
T Consensus 257 GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 257 GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 7899888753211000 0112335677788889999998543
No 163
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=32.21 E-value=1.5e+02 Score=29.85 Aligned_cols=151 Identities=18% Similarity=0.292 Sum_probs=78.7
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCe-EEeeeccCCCC--CCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQT-WSQPVIKGSPP--TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~-W~~l~~~g~~P--~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
+++-++||......+.+.+.++|-..+. -..+....+.- .-|..+-+++..++|||+-=.+ ....+.++|+..
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~---n~k~l~~~et~~- 134 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPD---NPKLLHVIETRS- 134 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCC---Chhheeeeeccc-
Confidence 4677888887666678999999954433 22333222221 1256677778888888874211 123344444321
Q ss_pred eEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee
Q 010011 121 TWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (520)
Q Consensus 121 ~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~ 199 (520)
-|.. -.+++- .+..+++|=|.. .-.+.+.|+...+-. ++ ...+.--..-+|+.+
T Consensus 135 ----------NPkG--lC~~~~~~~k~~LafPg~k----------~GqvQi~dL~~~~~~--~p-~~I~AH~s~Iacv~L 189 (346)
T KOG2111|consen 135 ----------NPKG--LCSLCPTSNKSLLAFPGFK----------TGQVQIVDLASTKPN--AP-SIINAHDSDIACVAL 189 (346)
T ss_pred ----------CCCc--eEeecCCCCceEEEcCCCc----------cceEEEEEhhhcCcC--Cc-eEEEcccCceeEEEE
Confidence 1222 111211 245788888852 244666666544321 00 001111122234444
Q ss_pred --CCEEEEEecCCCCCcccCceEEEECCCCc
Q 010011 200 --KNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (520)
Q Consensus 200 --~~~lyv~GG~~~~~~~~~~i~~yd~~t~~ 228 (520)
.+.++..+...+.- |-+||..+++
T Consensus 190 n~~Gt~vATaStkGTL-----IRIFdt~~g~ 215 (346)
T KOG2111|consen 190 NLQGTLVATASTKGTL-----IRIFDTEDGT 215 (346)
T ss_pred cCCccEEEEeccCcEE-----EEEEEcCCCc
Confidence 67777777665442 6677777665
No 164
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=32.09 E-value=57 Score=23.01 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=18.6
Q ss_pred CcceEEEEeEcCceeeeeeeecC
Q 010011 408 PLGYTIETTIDGKPLRGILFANK 430 (520)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~ 430 (520)
-+.|--...|.|-+|+|+|.-.-
T Consensus 27 e~aYQt~V~IgGHvFkGiLyDqG 49 (50)
T TIGR01624 27 EYAYQATVTIGGHVFKGFLHDQG 49 (50)
T ss_pred eEEEEEEEEECceEEeeEEeccC
Confidence 46777778899999999997543
No 165
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=31.84 E-value=5.9e+02 Score=26.26 Aligned_cols=145 Identities=12% Similarity=0.163 Sum_probs=74.9
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEE--EECCEEEEEcCCCCCCCCCcEEEEECCC-
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCT--TVGENLYVFGGTDGMNPLRDLHILDTSS- 119 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~t- 119 (520)
++.+.+.||.+ +..++++..++.|-- .++.-...-+++ ..++.+...|++++. +.++...+
T Consensus 75 ~~~l~aTGGgD------D~AflW~~~~ge~~~-----eltgHKDSVt~~~FshdgtlLATGdmsG~-----v~v~~~stg 138 (399)
T KOG0296|consen 75 NNNLVATGGGD------DLAFLWDISTGEFAG-----ELTGHKDSVTCCSFSHDGTLLATGDMSGK-----VLVFKVSTG 138 (399)
T ss_pred CCceEEecCCC------ceEEEEEccCCccee-----EecCCCCceEEEEEccCceEEEecCCCcc-----EEEEEcccC
Confidence 45588888854 346888888888664 222222233333 346778888887543 44554444
Q ss_pred -CeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe
Q 010011 120 -HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (520)
Q Consensus 120 -~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~ 198 (520)
..|........+---+.+. -..++++|-- ...+|.|.+.+..-.++-. -+..+.......
T Consensus 139 ~~~~~~~~e~~dieWl~WHp-----~a~illAG~~-----------DGsvWmw~ip~~~~~kv~~---Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHP-----RAHILLAGST-----------DGSVWMWQIPSQALCKVMS---GHNSPCTCGEFI 199 (399)
T ss_pred ceEEEeecccCceEEEEecc-----cccEEEeecC-----------CCcEEEEECCCcceeeEec---CCCCCccccccc
Confidence 3454432111111111111 1235555542 2457888887754444431 233334444444
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCc
Q 010011 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (520)
Q Consensus 199 ~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~ 228 (520)
-+++.++.|=.+ ..+.++|+++.+
T Consensus 200 pdGKr~~tgy~d------gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 200 PDGKRILTGYDD------GTIIVWNPKTGQ 223 (399)
T ss_pred CCCceEEEEecC------ceEEEEecCCCc
Confidence 466666554322 247788888874
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=31.51 E-value=4.3e+02 Score=27.37 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=83.3
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-------CCEEEEEecccCCCCccCcEEEEecCCCcEE-EeeeC
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-------GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT-KVITT 286 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-------~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~-~l~~~ 286 (520)
+...++...+.++.|..=. .|-.+|+..+- .+.+|.-++... .|-++|+....=. .+.
T Consensus 232 c~~~I~lw~~~~g~W~vd~------~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg------sIrIWDiRs~~~~~~~~-- 297 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWKVDQ------RPFTGHTKSVEDLQWSPTEDGVFASCSCDG------SIRIWDIRSGPKKAAVS-- 297 (440)
T ss_pred cccceEeeeeccCceeecC------ccccccccchhhhccCCccCceEEeeecCc------eEEEEEecCCCccceeE--
Confidence 5667888888899998533 33444654332 355666666543 3777787665110 010
Q ss_pred CCCCCCceeeeee---eeccccCCEEEEEcccCCCCCccCceEeeeccccccccccchhhhhhhhhhcccccc-------
Q 010011 287 GEGPSARFSVAGD---CLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNF------- 356 (520)
Q Consensus 287 ~~~p~~r~~~~~~---~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~l~~~k~l~~~~~~~~~------- 356 (520)
+..|-+. +.. ...--++.+||-++.. .+|-|...... ..+..+.. ....+.+.+..+
T Consensus 298 ------~kAh~sDVNVISW-nr~~~lLasG~DdGt~----~iwDLR~~~~~-~pVA~fk~-Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 298 ------TKAHNSDVNVISW-NRREPLLASGGDDGTL----SIWDLRQFKSG-QPVATFKY-HKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred ------eeccCCceeeEEc-cCCcceeeecCCCceE----EEEEhhhccCC-CcceeEEe-ccCCeeEEEeccccCceEE
Confidence 0111111 111 1122277788876652 13333222111 00000000 111222333332
Q ss_pred CccccceeEEeccccCCCC---CCCccccCC-CCCCCcCCCcccceeeeEeeeecCcceEEEEeEcCc
Q 010011 357 TPVHDRALVRIDTISDVHQ---PTPLLSYGE-PRRNNFPLNEGKKTFQAKVTESFPLGYTIETTIDGK 420 (520)
Q Consensus 357 ~p~~~~~~~~~~~~~~~~~---~~~~~~~~q-~~~~~~~~~~g~k~f~~~~~~~~~~~~~~~~~~~~~ 420 (520)
..-.+.+++.|+..-+++. ......++| -+.+..=.|+|||...---=-.=.-||-+.|+|||-
T Consensus 365 asg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 2236788888888776661 111111111 111122236888864221111234699999999994
No 167
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=31.08 E-value=4.8e+02 Score=25.02 Aligned_cols=214 Identities=14% Similarity=0.197 Sum_probs=94.3
Q ss_pred CCccceEEEEEcCCCEEEEEcCcCCCC---CCcCeEEEEECC-CCeEEeeec-c-C---CCCCCCCcceEEEECCEEEEE
Q 010011 30 GKRWGHTCNAIKGGRFLYVFGGYGKDN---CQTNQVHVFDTV-NQTWSQPVI-K-G---SPPTPRDSHSCTTVGENLYVF 100 (520)
Q Consensus 30 ~~R~ghs~~~v~~g~~Iyi~GG~~~~~---~~~~~~~~yd~~-t~~W~~l~~-~-g---~~P~~R~~hs~~~~~~~iyv~ 100 (520)
..+.+..+.+...++.|++|-...... ....-.+..... -.+|..+.. . + ..+.+-....+..-++.+++.
T Consensus 45 ~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~ 124 (275)
T PF13088_consen 45 GRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP 124 (275)
T ss_dssp TCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE
T ss_pred CCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE
Confidence 455566666653355677775221111 111112345555 458998642 1 1 111111222234447777776
Q ss_pred cCCCC-CCCCCcEEEEECCC-CeEEeecccCCCCCCCCCceEEE-E-CCEEEEEeCCCCCCCCCCcceeceeEEEEcC-c
Q 010011 101 GGTDG-MNPLRDLHILDTSS-HTWISPSVRGEGPEAREGHSAAL-V-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-T 175 (520)
Q Consensus 101 GG~~~-~~~~~~~~~yd~~t-~~W~~~~~~g~~p~~r~~hs~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~-t 175 (520)
. +.. .........+..+. .+|+...... ........+.+ . +++|+++--.. . .. .-.+....+ -
T Consensus 125 ~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~----~~---~~~~~~S~D~G 193 (275)
T PF13088_consen 125 Y-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-G----ND---DIYISRSTDGG 193 (275)
T ss_dssp E-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-S----ST---EEEEEEESSTT
T ss_pred E-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-C----CC---cEEEEEECCCC
Confidence 1 111 11123344455543 5698766321 22123333332 2 56888875421 0 01 222333333 4
Q ss_pred ceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeE-EEEE-CC
Q 010011 176 FVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAF-GK 252 (520)
Q Consensus 176 ~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs-~~~~-~~ 252 (520)
.+|...... ..|.+.....++.. ++.++++....... ..-.++.-.-...+|..+......+...++++ ++.. ++
T Consensus 194 ~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r-~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg 271 (275)
T PF13088_consen 194 RTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGR-SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDG 271 (275)
T ss_dssp SS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTS-EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETT
T ss_pred CcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCC-CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCC
Confidence 689986532 34555444444443 56777777632211 11223333334788997654111222234443 4444 45
Q ss_pred EEEE
Q 010011 253 NLFV 256 (520)
Q Consensus 253 ~iyv 256 (520)
+|+|
T Consensus 272 ~l~i 275 (275)
T PF13088_consen 272 KLYI 275 (275)
T ss_dssp EEEE
T ss_pred cCCC
Confidence 8876
No 168
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=31.06 E-value=7.3e+02 Score=27.09 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=80.1
Q ss_pred cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecc-----cCCCCccCcEEEEecCCCcEEEeeeCCCCC
Q 010011 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF-----TDSQNLYDDLYMIDVDSGLWTKVITTGEGP 290 (520)
Q Consensus 216 ~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~-----~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p 290 (520)
...|+.|++...+.+-.....-.-.....+++--+++.+-|+=.. .......|.|+++|..-+.--.+... .|
T Consensus 247 ~T~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~l--a~ 324 (521)
T PF09826_consen 247 STTIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGL--AP 324 (521)
T ss_pred ceEEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEcccc--CC
Confidence 345788888777766443311111234456666667776665433 23344578899998444444444332 23
Q ss_pred CCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccccccccchhhhhhhhhhccccccCccccceeEEeccc
Q 010011 291 SARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTI 370 (520)
Q Consensus 291 ~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~l~~~k~l~~~~~~~~~~p~~~~~~~~~~~~ 370 (520)
-.|-. ++-+ .+++.|++- ....+-+|.+|+..+....+ --+||..--...+.|..+..++-++..
T Consensus 325 gE~Iy-svRF----~Gd~~Y~VT-----FrqvDPLfviDLsdP~~P~v-----lGeLKIPGfS~YLHP~~e~~LlGiG~~ 389 (521)
T PF09826_consen 325 GERIY-SVRF----MGDRAYLVT-----FRQVDPLFVIDLSDPANPKV-----LGELKIPGFSDYLHPYDENHLLGIGKD 389 (521)
T ss_pred CceEE-EEEE----eCCeEEEEE-----EeecCceEEEECCCCCCCce-----eeEEECccchhceeECCCCeEEEEccc
Confidence 33422 2222 256666642 24567889998776553221 123455555556688888888888886
Q ss_pred cCCC
Q 010011 371 SDVH 374 (520)
Q Consensus 371 ~~~~ 374 (520)
....
T Consensus 390 ~~~~ 393 (521)
T PF09826_consen 390 TDED 393 (521)
T ss_pred Cccc
Confidence 5554
No 169
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=29.96 E-value=7e+02 Score=26.50 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=49.3
Q ss_pred CeEEEEECCCC-eE-EeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCC
Q 010011 60 NQVHVFDTVNQ-TW-SQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (520)
Q Consensus 60 ~~~~~yd~~t~-~W-~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 136 (520)
..+.++|.... .- +.+ .| .+... ++++.. .+.+++.|+.++ .+.++|+.+.+-... +..-..
T Consensus 225 ~tiriwd~~~~~~~~~~l--~g-H~~~v--~~~~f~p~g~~i~Sgs~D~-----tvriWd~~~~~~~~~-----l~~hs~ 289 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTL--KG-HSTYV--TSVAFSPDGNLLVSGSDDG-----TVRIWDVRTGECVRK-----LKGHSD 289 (456)
T ss_pred ceEEEeeccCCCeEEEEe--cC-CCCce--EEEEecCCCCEEEEecCCC-----cEEEEeccCCeEEEe-----eeccCC
Confidence 34778888333 32 232 22 22222 333333 447888888653 478888888554321 111111
Q ss_pred CceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE
Q 010011 137 GHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (520)
Q Consensus 137 ~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W 178 (520)
.-+++.. ++.+++.+.+ ...+.+||+.+..-
T Consensus 290 ~is~~~f~~d~~~l~s~s~-----------d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASY-----------DGTIRVWDLETGSK 322 (456)
T ss_pred ceEEEEECCCCCEEEEcCC-----------CccEEEEECCCCce
Confidence 2222222 4567776663 35577888887773
No 170
>PTZ00421 coronin; Provisional
Probab=29.14 E-value=7.6e+02 Score=26.69 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=35.0
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
+.+++.||.++ .+.+||+.+.+-...-. .........+...++.+++.|+.+. .+.+||+.+..
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~---~h~~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVIK---CHSDQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEEc---CCCCceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 45777777543 37788988764322111 0011111112223566777777643 38899998765
No 171
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=28.86 E-value=6.7e+02 Score=25.93 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=92.0
Q ss_pred eEEEEE-cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE--ECCEEEEEcCCCCCCCCCc
Q 010011 35 HTCNAI-KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 35 hs~~~v-~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~ 111 (520)
+..+++ ..++++|+..+. .+.+.++|..+++-.... +..+.-+..+. .++++|+.-... ..+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~------~~~v~vid~~~~~~~~~~-----~vG~~P~~~~~~~~~~~vYV~n~~~---~~~~ 141 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGD------SNTVSVIDTATNTVLGSI-----PVGLGPVGLAVDPDGKYVYVANAGN---GNNT 141 (381)
T ss_pred ccceeeCCCCCeEEEecCC------CCeEEEEcCcccceeeEe-----eeccCCceEEECCCCCEEEEEeccc---CCce
Confidence 344333 346679988764 366889997776655422 22223333333 366899986422 3567
Q ss_pred EEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCC-CCCCC
Q 010011 112 LHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-NPPSA 190 (520)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~-~~p~~ 190 (520)
+.++|..+++-......|..| .+.+....++++|+.-. -.+.+..+|..+..-.. .... ..+..
T Consensus 142 vsvid~~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~~-----------~~~~v~vi~~~~~~v~~-~~~~~~~~~~ 206 (381)
T COG3391 142 VSVIDAATNKVTATIPVGNTP---TGVAVDPDGNKVYVTNS-----------DDNTVSVIDTSGNSVVR-GSVGSLVGVG 206 (381)
T ss_pred EEEEeCCCCeEEEEEecCCCc---ceEEECCCCCeEEEEec-----------CCCeEEEEeCCCcceec-cccccccccC
Confidence 999999998876554444434 33333333567998741 14667888877654333 2111 11111
Q ss_pred CcceeEEe--eCCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 010011 191 RDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 191 r~~h~~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
..-+...+ -++++|+.-..+. .+.+..+|..++.-...
T Consensus 207 ~~P~~i~v~~~g~~~yV~~~~~~----~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 207 TGPAGIAVDPDGNRVYVANDGSG----SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCceEEECCCCCEEEEEeccCC----CceEEEEeCCCceEEEe
Confidence 11122222 2566888765442 24577888877655444
No 172
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=27.60 E-value=17 Score=25.34 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=11.5
Q ss_pred eEeeeecCcceEEE
Q 010011 401 AKVTESFPLGYTIE 414 (520)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (520)
|-+||-||||++-+
T Consensus 18 aDisDyFNYGf~E~ 31 (45)
T PF05182_consen 18 ADISDYFNYGFNEE 31 (45)
T ss_pred CChhhhcCCCCCHH
Confidence 56899999999754
No 173
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=27.05 E-value=8.4e+02 Score=26.49 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=37.7
Q ss_pred ECCEEEEEecccCCCCccCcEEEEecCCC-----cEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCc
Q 010011 250 FGKNLFVFGGFTDSQNLYDDLYMIDVDSG-----LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 324 (520)
Q Consensus 250 ~~~~iyv~GG~~~~~~~~~dv~~yd~~~~-----~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d 324 (520)
.++++++--|.++. +-+||+... +|+-|.. ++-..-+|+ ..+.+|++.|-..........
T Consensus 374 ~dg~~LlSRg~D~t------LKvWDLrq~kkpL~~~tgL~t-------~~~~tdc~F--SPd~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDT------LKVWDLRQFKKPLNVRTGLPT-------PFPGTDCCF--SPDDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred cccchhhhccCCCc------eeeeeccccccchhhhcCCCc-------cCCCCcccc--CCCceEEEecccccCCCCCce
Confidence 35666666665432 556666543 4544432 222233344 457888888865544444445
Q ss_pred eEeeeccccc
Q 010011 325 MYYLYTGLVN 334 (520)
Q Consensus 325 v~~l~~~~~~ 334 (520)
+++|+.-+..
T Consensus 439 L~f~d~~t~d 448 (641)
T KOG0772|consen 439 LFFFDRMTLD 448 (641)
T ss_pred EEEEecccee
Confidence 6666654443
No 174
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.76 E-value=6.4e+02 Score=24.70 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=26.7
Q ss_pred ECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCC-CcEEEeee
Q 010011 223 DTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS-GLWTKVIT 285 (520)
Q Consensus 223 d~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~-~~W~~l~~ 285 (520)
+.+.+.|+.-.... .|.+.. +..-.+-+.++.++|.+ |.+.++-... ++|.++..
T Consensus 241 ~~e~e~wk~tll~~-f~~~~w-~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEE-FPDVVW-RVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCccCccccccccc-CCcceE-EEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEccc
Confidence 44566777543321 333333 33334444444444432 2355555444 48988754
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.55 E-value=1.1e+03 Score=26.60 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=34.7
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCC
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD 104 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~ 104 (520)
|-.+.-++|..+++..| +.+++||+..+.--+.- +|... -.+..+-+.+++.|.-||.+
T Consensus 16 ~d~afkPDGsqL~lAAg--------~rlliyD~ndG~llqtL-KgHKD--tVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAG--------SRLLVYDTSDGTLLQPL-KGHKD--TVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred heeEECCCCceEEEecC--------CEEEEEeCCCccccccc-ccccc--eEEEEEEccCCceeccCCCc
Confidence 44455577877888766 56899999877654410 11110 11112223378899888865
No 176
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=23.33 E-value=9e+02 Score=25.58 Aligned_cols=106 Identities=16% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCC
Q 010011 109 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (520)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~ 187 (520)
..++|++|+.+.+=.++. ..+ ....+-.-.-++ +|+..-.+ .-...++++|++...=+.+...+.
T Consensus 261 ~~~iy~~dl~~~~~~~Lt---~~~-gi~~~Ps~spdG~~ivf~Sdr---------~G~p~I~~~~~~g~~~~riT~~~~- 326 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLT---NGF-GINTSPSWSPDGSKIVFTSDR---------GGRPQIYLYDLEGSQVTRLTFSGG- 326 (425)
T ss_pred CccEEEEcCCCCcceecc---cCC-ccccCccCCCCCCEEEEEeCC---------CCCcceEEECCCCCceeEeeccCC-
Confidence 458999999887633322 111 222233333344 44444221 113489999999887777753311
Q ss_pred CCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc-EEEeeC
Q 010011 188 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNT 234 (520)
Q Consensus 188 p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~-W~~~~~ 234 (520)
...+-....+++.++|-+...+. -++..+|+.+.. |+.+..
T Consensus 327 ---~~~~p~~SpdG~~i~~~~~~~g~---~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 327 ---GNSNPVWSPDGDKIVFESSSGGQ---WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred ---CCcCccCCCCCCEEEEEeccCCc---eeeEEeccCCCCcEEEccc
Confidence 11122233355555554433221 568888887766 888765
No 177
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.94 E-value=8.5e+02 Score=25.11 Aligned_cols=116 Identities=13% Similarity=0.017 Sum_probs=61.6
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceE-EEECCEEEEEcCCCC----CCCCCcEEEEECC
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSC-TTVGENLYVFGGTDG----MNPLRDLHILDTS 118 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~-~~~~~~iyv~GG~~~----~~~~~~~~~yd~~ 118 (520)
..+|+.-..... ..+.++++|..+.+-.. ..|.....+.. ..-+..||+.-.+-. ....+.+.+||+.
T Consensus 13 ~~v~V~d~~~~~--~~~~v~ViD~~~~~v~g-----~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 13 RRVYVLDPGHFA--ATTQVYTIDGEAGRVLG-----MTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CEEEEECCcccc--cCceEEEEECCCCEEEE-----EEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 346665443221 23779999998866443 22232222223 333567999876321 2245789999999
Q ss_pred CCeEE-eecccCCCCCCC-----CCceEE-EE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE
Q 010011 119 SHTWI-SPSVRGEGPEAR-----EGHSAA-LV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (520)
Q Consensus 119 t~~W~-~~~~~g~~p~~r-----~~hs~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~ 179 (520)
|.+-. +++. .+.|| +-+..+ .- +..|||.-= ...+.+-+.|+.+.+--
T Consensus 86 t~~~~~~i~~---p~~p~~~~~~~~~~~~ls~dgk~l~V~n~----------~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 86 THLPIADIEL---PEGPRFLVGTYPWMTSLTPDNKTLLFYQF----------SPSPAVGVVDLEGKAFV 141 (352)
T ss_pred cCcEEeEEcc---CCCchhhccCccceEEECCCCCEEEEecC----------CCCCEEEEEECCCCcEE
Confidence 98764 3331 23333 111222 22 345777521 12355677777765543
No 178
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.52 E-value=9e+02 Score=25.27 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCC-CCCCCceEEEECCEEEEE-eCCCCCCCCCCcceeceeEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGP-EAREGHSAALVGKRLFIF-GGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~hs~~~~~~~lyv~-GG~~~~~~~~~~~~~~~v~~~ 171 (520)
+++-+||+|-- .....+|.+|+.+.+-+++. +.+ ...++...+.-++.+|.+ .+ ..+++.
T Consensus 46 dG~kllF~s~~--dg~~nly~lDL~t~~i~QLT---dg~g~~~~g~~~s~~~~~~~Yv~~~-------------~~l~~v 107 (386)
T PF14583_consen 46 DGRKLLFASDF--DGNRNLYLLDLATGEITQLT---DGPGDNTFGGFLSPDDRALYYVKNG-------------RSLRRV 107 (386)
T ss_dssp TS-EEEEEE-T--TSS-EEEEEETTT-EEEE------SS-B-TTT-EE-TTSSEEEEEETT-------------TEEEEE
T ss_pred CCCEEEEEecc--CCCcceEEEEcccCEEEECc---cCCCCCccceEEecCCCeEEEEECC-------------CeEEEE
Confidence 44444454431 22357899999999999887 333 233443333334555544 33 367889
Q ss_pred EcCcceEEEcccCCCCCCCCcceeEEe-e-CCEEEEEecCC----C-------------CCcccCceEEEECCCCcEEEe
Q 010011 172 NTETFVWKRATTSGNPPSARDSHTCSS-W-KNKIIVIGGED----G-------------HDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 172 d~~t~~W~~v~~~~~~p~~r~~h~~~~-~-~~~lyv~GG~~----~-------------~~~~~~~i~~yd~~t~~W~~~ 232 (520)
|+++.+=+.+- ..|..-.+....+ - ++.. +.|=.. . .......+...|+++.+.+.+
T Consensus 108 dL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v 183 (386)
T PF14583_consen 108 DLDTLEERVVY---EVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV 183 (386)
T ss_dssp ETTT--EEEEE---E--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE
T ss_pred ECCcCcEEEEE---ECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE
Confidence 99887766654 2333333222222 2 2222 221110 0 011345688889999888876
Q ss_pred eCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 233 NTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 233 ~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
-.. ..-.+|-... .+..+++|.=-..-...-..||..|........+..
T Consensus 184 ~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~ 233 (386)
T PF14583_consen 184 FED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR 233 (386)
T ss_dssp EEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-
T ss_pred Eec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec
Confidence 531 1122343332 344566663221112222479999988877777754
No 179
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.17 E-value=9.1e+02 Score=25.17 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=42.5
Q ss_pred cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCcee
Q 010011 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS 295 (520)
Q Consensus 216 ~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~ 295 (520)
...+-.||+.... +.+......-.+....+... +++.+++|-. ..++..||+..+.--...-.+..-..|+-
T Consensus 225 ~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~------~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 225 YHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTP-SGNFIYTGNT------KGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred ceeEEEecCcccC-cceeEeccccCcceeeeecC-CCcEEEEecc------cchhheecccCceeeccccCCccCCcceE
Confidence 4568889987443 33333221222222222222 3333444433 34588899888754333222222223433
Q ss_pred eeeeeeccccCCEEEEEcccCCC
Q 010011 296 VAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
|+ ..+..++..+|.+..
T Consensus 297 h~------hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 297 HC------HPTHPVLASCGLDRY 313 (412)
T ss_pred EE------cCCCceEEeecccee
Confidence 33 235567777887643
No 180
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=22.15 E-value=9e+02 Score=25.15 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=55.5
Q ss_pred cceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCC--CCCCCCC--ceeEEEEE
Q 010011 175 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMVLSPR--AGHSTVAF 250 (520)
Q Consensus 175 t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~--~~~p~~R--~~hs~~~~ 250 (520)
.+.|..+.. .....--++.++|++|++. ....++.++.+- .-.++.+. +.+...+ ...-.+..
T Consensus 189 ~~~Wt~l~~-----~~~~~~DIi~~kGkfYAvD-------~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALKQ-----MGYHFSDIIVHKGQTYALD-------SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEccC-----CCceeeEEEEECCEEEEEc-------CCCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE
Confidence 379998862 1222344677899999982 224567776421 11222210 1111111 12235556
Q ss_pred CCEEEEEecccCCCC-------------ccCcEEEEecCCCcEEEeeeCC
Q 010011 251 GKNLFVFGGFTDSQN-------------LYDDLYMIDVDSGLWTKVITTG 287 (520)
Q Consensus 251 ~~~iyv~GG~~~~~~-------------~~~dv~~yd~~~~~W~~l~~~~ 287 (520)
.++++++..+..... ..-.|+++|.+...|.++...+
T Consensus 256 ~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 256 CGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 678998887532110 1124677898899999998764
No 181
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=22.02 E-value=5.6e+02 Score=22.72 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=47.0
Q ss_pred EEECCEEEEEcCCCCCCCCCcEEEEECCCCeE-EeecccCCCCCCCC----CceEEEE-CCEEEEEeCCCCCCCCCCcce
Q 010011 91 TTVGENLYVFGGTDGMNPLRDLHILDTSSHTW-ISPSVRGEGPEARE----GHSAALV-GKRLFIFGGCGKSSNTNDEVY 164 (520)
Q Consensus 91 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~g~~p~~r~----~hs~~~~-~~~lyv~GG~~~~~~~~~~~~ 164 (520)
+.++|.+|-++-........-+..||+.+.+. ..++ +|.... ......+ +++|-++--. ....
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~----lP~~~~~~~~~~~L~~v~~~~L~~~~~~-------~~~~ 70 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP----LPFCNDDDDDSVSLSVVRGDCLCVLYQC-------DETS 70 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC----CCCccCccCCEEEEEEecCCEEEEEEec-------cCCc
Confidence 45678888776544333222689999999999 5544 333222 1222122 5677666321 1112
Q ss_pred eceeEEEEc---CcceEEEccc
Q 010011 165 YNDLYILNT---ETFVWKRATT 183 (520)
Q Consensus 165 ~~~v~~~d~---~t~~W~~v~~ 183 (520)
.-+||+.+- ...+|.++-.
T Consensus 71 ~~~IWvm~~~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 71 KIEIWVMKKYGYGKESWTKLFT 92 (164)
T ss_pred cEEEEEEeeeccCcceEEEEEE
Confidence 357888762 3679998853
No 182
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.97 E-value=7.4e+02 Score=26.00 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=10.9
Q ss_pred eeccccCCEEEEEccc
Q 010011 300 CLDPLKGGVLVFIGGC 315 (520)
Q Consensus 300 ~~~~~~~~~l~v~GG~ 315 (520)
.+.+..++.||.+|+.
T Consensus 394 i~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 394 IRAVEDNNYIVVVGDS 409 (463)
T ss_pred eeccccccEEEEecCC
Confidence 3344567888889983
No 183
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=21.82 E-value=9.7e+02 Score=25.39 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=39.4
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.+.+++.|+.++ .+.++|+++.+-...-. .........+..-++..++.+..+ ..+.+||+.+..
T Consensus 257 ~g~~i~Sgs~D~------tvriWd~~~~~~~~~l~---~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 257 DGNLLVSGSDDG------TVRIWDVRTGECVRKLK---GHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGS 321 (456)
T ss_pred CCCEEEEecCCC------cEEEEeccCCeEEEeee---ccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCc
Confidence 558899988664 38888988844333221 111222222333456777777653 238999988877
Q ss_pred E
Q 010011 280 W 280 (520)
Q Consensus 280 W 280 (520)
-
T Consensus 322 ~ 322 (456)
T KOG0266|consen 322 K 322 (456)
T ss_pred e
Confidence 3
No 184
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=21.52 E-value=6.7e+02 Score=23.42 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=40.2
Q ss_pred cceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-e-CCEEE-EEecCCCCCcccCceEEEECCCCcEEEeeC
Q 010011 162 EVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-W-KNKII-VIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (520)
Q Consensus 162 ~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~-~~~ly-v~GG~~~~~~~~~~i~~yd~~t~~W~~~~~ 234 (520)
..-.-++|++|..+..|..+..... ...+..--+. + +..|. ++|..-+.-.--..++.|++.++.-+.+-.
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~--~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQN--EEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCc--ccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 3445778899988888776643211 1122222222 2 44444 454322221123569999999999888865
No 185
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=21.02 E-value=1e+03 Score=25.33 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=13.6
Q ss_pred CcEEEEecCCCc----EEEeeeC
Q 010011 268 DDLYMIDVDSGL----WTKVITT 286 (520)
Q Consensus 268 ~dv~~yd~~~~~----W~~l~~~ 286 (520)
+..|+||..++. |..+...
T Consensus 307 ~~tlcyD~at~~~~~qw~~l~tg 329 (469)
T PF11134_consen 307 RKTLCYDAATSQWGEQWFILKTG 329 (469)
T ss_pred CceEEEEcccCCcccceEEEecc
Confidence 468999999984 5555543
No 186
>PHA02816 hypothetical protein; Provisional
Probab=20.64 E-value=48 Score=25.74 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=12.5
Q ss_pred cCceeeeeeeecCC
Q 010011 418 DGKPLRGILFANKP 431 (520)
Q Consensus 418 ~~~~~~~~~~~~~~ 431 (520)
|-|.+||+.|.||-
T Consensus 2 dkkiycgivfgykl 15 (106)
T PHA02816 2 DKKIYCGIVFGYKL 15 (106)
T ss_pred CceEEEEEEeeHHH
Confidence 77999999999985
No 187
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=20.27 E-value=1.5e+03 Score=27.11 Aligned_cols=210 Identities=14% Similarity=0.081 Sum_probs=106.3
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCC-------CCCCC--CcceEEEE--CCEEEEEcCCCCCCCCCc
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGS-------PPTPR--DSHSCTTV--GENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~-------~P~~R--~~hs~~~~--~~~iyv~GG~~~~~~~~~ 111 (520)
++.|||.-- ..+.+.++|.....-..+...+. ....+ .-++++.. ++.|||.-.. .+.
T Consensus 579 ~g~lyVaDs------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-----n~~ 647 (1057)
T PLN02919 579 NNRLFISDS------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-----NHA 647 (1057)
T ss_pred CCeEEEEEC------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-----Cce
Confidence 456888632 23568899987554333221111 01111 12444444 4568887532 246
Q ss_pred EEEEECCCCeEEeecccCCCC------------CCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce
Q 010011 112 LHILDTSSHTWISPSVRGEGP------------EAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (520)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~~p------------~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~ 177 (520)
+.++|+.++.-+.+...|... .-..-+.+++. ++.+||.... .+.++++|+.+..
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------~~~I~v~d~~~g~ 716 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------QHQIWEYNISDGV 716 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------CCeEEEEECCCCe
Confidence 888998887665543222110 00111234433 4678887541 3568888887766
Q ss_pred EEEcccCCC-------CCC---CCcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCC-CCCC----
Q 010011 178 WKRATTSGN-------PPS---ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG-MVLS---- 240 (520)
Q Consensus 178 W~~v~~~~~-------~p~---~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~-~~p~---- 240 (520)
...+...+. .+. ...-+.+++. ++.|||.... .+.|.+||+++.....+.... ..+.
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCccccc
Confidence 554432111 000 0111223332 3468887653 356999998876644322100 0000
Q ss_pred ----------CCce--eEE-EEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeC
Q 010011 241 ----------PRAG--HST-VAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 241 ----------~R~~--hs~-~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
.... .++ +.-++.+||....+ +.|.+||++++....+...
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------HKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------CEEEEEECCCCeEEEEecc
Confidence 0011 122 22346788876543 4599999999887766543
Done!