Query 010011
Match_columns 520
No_of_seqs 343 out of 2563
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:55:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 8.8E-44 3E-48 357.7 32.2 283 26-340 9-295 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 9.2E-42 3.1E-46 341.4 35.5 268 43-339 15-283 (302)
3 3ii7_A Kelch-like protein 7; p 100.0 1.7E-41 5.7E-46 340.2 34.4 266 44-340 12-280 (306)
4 2vpj_A Kelch-like protein 12; 100.0 2.2E-41 7.4E-46 338.3 33.9 270 43-340 14-286 (301)
5 2uvk_A YJHT; unknown function, 100.0 3.3E-41 1.1E-45 345.4 31.5 292 27-341 5-351 (357)
6 1zgk_A Kelch-like ECH-associat 100.0 2.7E-40 9.4E-45 332.2 33.1 249 27-300 56-307 (308)
7 2xn4_A Kelch-like protein 2; s 100.0 3.8E-40 1.3E-44 329.7 33.7 252 27-301 47-298 (302)
8 3ii7_A Kelch-like protein 7; p 100.0 4.2E-40 1.4E-44 330.0 33.8 252 27-301 41-293 (306)
9 4asc_A Kelch repeat and BTB do 100.0 1.2E-40 4E-45 335.8 25.6 259 27-314 31-305 (315)
10 2vpj_A Kelch-like protein 12; 100.0 2E-39 6.7E-44 324.2 33.7 249 27-301 48-299 (301)
11 2woz_A Kelch repeat and BTB do 100.0 4E-39 1.4E-43 325.0 32.1 274 29-338 6-293 (318)
12 4asc_A Kelch repeat and BTB do 100.0 1E-39 3.5E-44 328.9 27.6 265 44-338 5-283 (315)
13 2woz_A Kelch repeat and BTB do 100.0 7.8E-40 2.7E-44 330.2 25.7 258 27-313 42-314 (318)
14 2zwa_A Leucine carboxyl methyl 100.0 9.8E-38 3.4E-42 347.3 29.7 283 27-331 384-693 (695)
15 2uvk_A YJHT; unknown function, 100.0 6.2E-36 2.1E-40 306.2 27.3 244 27-286 50-351 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 1.9E-31 6.4E-36 296.7 27.8 240 79-337 383-640 (695)
17 1k3i_A Galactose oxidase precu 100.0 7E-31 2.4E-35 290.8 24.3 268 28-316 182-531 (656)
18 1k3i_A Galactose oxidase precu 99.9 2E-26 6.7E-31 255.1 19.5 254 62-340 168-505 (656)
19 3mbr_X Glutamine cyclotransfer 98.0 0.0022 7.5E-08 61.0 23.1 202 85-329 21-232 (243)
20 3dsm_A Uncharacterized protein 97.8 0.0059 2E-07 60.5 25.4 250 29-331 41-301 (328)
21 3mbr_X Glutamine cyclotransfer 97.8 0.0062 2.1E-07 57.9 22.9 182 43-260 30-224 (243)
22 3dsm_A Uncharacterized protein 97.8 0.018 6.3E-07 56.8 27.7 230 59-334 16-255 (328)
23 3nol_A Glutamine cyclotransfer 97.6 0.0058 2E-07 58.6 19.6 190 88-314 46-244 (262)
24 3vgz_A Uncharacterized protein 97.5 0.084 2.9E-06 51.4 27.7 245 35-332 44-303 (353)
25 3nok_A Glutaminyl cyclase; bet 97.4 0.011 3.6E-07 56.9 18.9 158 87-283 57-216 (268)
26 3nol_A Glutamine cyclotransfer 97.4 0.0083 2.8E-07 57.6 18.1 181 43-260 52-245 (262)
27 3vgz_A Uncharacterized protein 97.3 0.13 4.6E-06 49.9 28.2 207 35-285 92-311 (353)
28 1l0q_A Surface layer protein; 97.2 0.029 1E-06 55.9 21.2 198 35-283 35-239 (391)
29 2iwa_A Glutamine cyclotransfer 97.2 0.1 3.5E-06 50.2 23.8 201 35-278 24-238 (266)
30 3nok_A Glutaminyl cyclase; bet 97.2 0.018 6.1E-07 55.3 17.8 150 43-232 64-216 (268)
31 2iwa_A Glutamine cyclotransfer 97.2 0.12 4E-06 49.7 23.6 203 88-332 24-237 (266)
32 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.14 4.8E-06 52.2 24.6 212 60-318 219-430 (445)
33 3jrp_A Fusion protein of prote 97.0 0.042 1.4E-06 54.0 19.5 192 41-279 21-242 (379)
34 1l0q_A Surface layer protein; 96.9 0.046 1.6E-06 54.4 18.9 187 44-284 2-196 (391)
35 3q7m_A Lipoprotein YFGL, BAMB; 96.9 0.39 1.3E-05 47.7 27.7 174 60-282 153-344 (376)
36 3v9f_A Two-component system se 96.8 0.042 1.4E-06 61.1 19.4 214 61-316 428-647 (781)
37 4a2l_A BT_4663, two-component 96.7 0.1 3.4E-06 58.2 21.0 212 61-316 428-650 (795)
38 1k8k_C P40, ARP2/3 complex 41 96.6 0.26 8.8E-06 48.2 21.3 151 41-225 18-172 (372)
39 1gxr_A ESG1, transducin-like e 96.6 0.3 1E-05 46.8 21.3 218 41-318 107-329 (337)
40 1kb0_A Quinohemoprotein alcoho 96.5 0.48 1.6E-05 51.8 24.8 209 43-279 77-348 (677)
41 4ery_A WD repeat-containing pr 96.5 0.6 2E-05 44.7 24.9 229 37-318 28-260 (312)
42 2hqs_A Protein TOLB; TOLB, PAL 96.4 0.13 4.5E-06 52.4 18.6 203 41-285 188-395 (415)
43 3bws_A Protein LP49; two-domai 96.4 0.4 1.4E-05 48.2 21.9 224 61-331 102-333 (433)
44 3q7m_A Lipoprotein YFGL, BAMB; 96.4 0.89 3E-05 45.0 31.3 186 43-282 103-303 (376)
45 1gxr_A ESG1, transducin-like e 96.3 0.48 1.6E-05 45.3 21.1 198 38-282 57-260 (337)
46 3ow8_A WD repeat-containing pr 96.3 0.85 2.9E-05 44.3 23.0 210 60-318 102-313 (321)
47 2ad6_A Methanol dehydrogenase 96.3 0.76 2.6E-05 49.1 24.3 119 43-181 62-193 (571)
48 2hqs_A Protein TOLB; TOLB, PAL 96.3 0.28 9.4E-06 50.0 19.8 222 60-331 159-386 (415)
49 1p22_A F-BOX/WD-repeat protein 96.3 0.27 9.3E-06 49.9 19.8 187 42-280 142-328 (435)
50 4aez_A CDC20, WD repeat-contai 96.2 0.34 1.2E-05 48.6 20.2 210 61-317 157-371 (401)
51 1kb0_A Quinohemoprotein alcoho 96.2 0.8 2.7E-05 50.0 24.2 127 88-233 71-208 (677)
52 3hfq_A Uncharacterized protein 96.2 0.46 1.6E-05 46.3 20.4 208 48-285 6-228 (347)
53 1r5m_A SIR4-interacting protei 96.1 1.2 4E-05 44.0 23.6 227 37-317 113-352 (425)
54 2ojh_A Uncharacterized protein 96.1 0.61 2.1E-05 43.3 20.1 194 60-285 62-266 (297)
55 2ovr_B FBW7, F-BOX/WD repeat p 96.1 1.1 3.8E-05 45.3 23.3 185 42-281 128-312 (445)
56 3bws_A Protein LP49; two-domai 96.0 0.21 7.1E-06 50.4 17.4 202 39-282 129-339 (433)
57 3jro_A Fusion protein of prote 96.0 0.11 3.8E-06 57.5 16.0 191 42-278 20-239 (753)
58 1jmx_B Amine dehydrogenase; ox 96.0 0.31 1.1E-05 47.1 17.6 163 41-231 8-180 (349)
59 1k8k_C P40, ARP2/3 complex 41 95.9 1.2 4.2E-05 43.2 21.8 70 200-285 213-284 (372)
60 1r5m_A SIR4-interacting protei 95.7 0.4 1.4E-05 47.5 17.6 179 60-279 171-363 (425)
61 4ery_A WD repeat-containing pr 95.6 1.6 5.5E-05 41.6 23.5 180 60-280 87-271 (312)
62 3v9f_A Two-component system se 95.6 0.4 1.4E-05 53.1 18.9 183 60-278 469-657 (781)
63 1q7f_A NHL, brain tumor CG1071 95.6 1.6 5.3E-05 41.1 27.4 210 34-285 31-246 (286)
64 1got_B GT-beta; complex (GTP-b 95.6 1.6 5.5E-05 42.5 21.3 178 94-318 154-335 (340)
65 1yiq_A Quinohemoprotein alcoho 95.6 3.1 0.0001 45.4 25.3 125 89-232 65-200 (689)
66 3scy_A Hypothetical bacterial 95.5 2 6.7E-05 42.0 22.8 79 45-126 14-93 (361)
67 1ri6_A Putative isomerase YBHE 95.5 1.8 6.1E-05 41.4 21.7 208 37-285 43-272 (343)
68 3zwl_B Eukaryotic translation 95.5 1.9 6.5E-05 41.5 22.1 204 38-284 38-256 (369)
69 1kv9_A Type II quinohemoprotei 95.4 3.7 0.00013 44.6 26.1 116 43-181 66-195 (668)
70 3ow8_A WD repeat-containing pr 95.4 2.1 7.1E-05 41.5 22.9 179 94-318 91-271 (321)
71 1yiq_A Quinohemoprotein alcoho 95.3 4.2 0.00014 44.4 26.7 117 43-181 70-200 (689)
72 3u4y_A Uncharacterized protein 95.3 1.9 6.4E-05 41.3 20.5 192 42-280 8-210 (331)
73 1w6s_A Methanol dehydrogenase 95.3 2.5 8.5E-05 45.4 23.0 121 43-182 62-200 (599)
74 2ojh_A Uncharacterized protein 95.3 1.8 6.2E-05 40.0 19.9 188 59-284 21-213 (297)
75 3mkq_A Coatomer beta'-subunit; 95.3 1.1 3.8E-05 49.1 20.9 194 37-280 18-220 (814)
76 4aow_A Guanine nucleotide-bind 95.2 1 3.5E-05 43.1 18.3 139 166-331 195-338 (340)
77 4a2l_A BT_4663, two-component 95.2 4 0.00014 45.0 25.2 185 61-285 108-299 (795)
78 1pby_B Quinohemoprotein amine 95.2 1.6 5.4E-05 41.6 19.4 118 36-180 38-168 (337)
79 3zwl_B Eukaryotic translation 95.2 1 3.4E-05 43.5 18.1 221 60-318 96-338 (369)
80 1nir_A Nitrite reductase; hemo 95.1 0.99 3.4E-05 47.8 19.0 252 34-334 181-460 (543)
81 3u4y_A Uncharacterized protein 95.1 2.4 8.3E-05 40.4 22.1 196 37-285 45-260 (331)
82 2ad6_A Methanol dehydrogenase 95.0 3.1 0.00011 44.3 22.8 127 88-233 56-194 (571)
83 2xdw_A Prolyl endopeptidase; a 95.0 5.1 0.00017 43.5 25.9 217 39-283 132-375 (710)
84 1p22_A F-BOX/WD-repeat protein 95.0 1.9 6.6E-05 43.4 20.3 182 46-278 185-366 (435)
85 1kv9_A Type II quinohemoprotei 95.0 4.1 0.00014 44.2 23.9 125 88-232 60-195 (668)
86 4g56_B MGC81050 protein; prote 94.9 0.6 2.1E-05 46.2 15.9 106 144-279 150-260 (357)
87 1ri6_A Putative isomerase YBHE 94.9 1.5 5.1E-05 41.9 18.3 210 38-286 90-319 (343)
88 1got_B GT-beta; complex (GTP-b 94.9 3 0.0001 40.5 26.3 219 42-317 66-292 (340)
89 3fm0_A Protein CIAO1; WDR39,SG 94.8 2.2 7.6E-05 41.6 19.6 190 41-275 26-223 (345)
90 1qks_A Cytochrome CD1 nitrite 94.8 2.3 7.9E-05 45.3 20.8 255 33-333 198-478 (567)
91 3c5m_A Oligogalacturonate lyas 94.6 2.9 0.0001 40.9 20.2 157 109-286 167-338 (396)
92 3jrp_A Fusion protein of prote 94.6 1.8 6.1E-05 42.0 18.4 183 94-318 22-232 (379)
93 3no2_A Uncharacterized protein 94.6 3.2 0.00011 39.5 20.3 213 45-313 6-230 (276)
94 2ecf_A Dipeptidyl peptidase IV 94.4 2.5 8.5E-05 45.9 20.7 225 35-285 40-329 (741)
95 4gga_A P55CDC, cell division c 94.4 1.8 6.2E-05 43.5 18.2 98 200-318 288-387 (420)
96 1vyh_C Platelet-activating fac 94.3 3.1 0.00011 41.7 19.8 151 37-230 113-269 (410)
97 3fm0_A Protein CIAO1; WDR39,SG 94.2 0.69 2.4E-05 45.3 14.3 185 94-318 27-217 (345)
98 3dwl_C Actin-related protein 2 94.0 0.29 1E-05 48.2 11.1 150 41-226 21-177 (377)
99 2bkl_A Prolyl endopeptidase; m 94.0 3.9 0.00013 44.3 21.0 197 60-283 147-357 (695)
100 2dg1_A DRP35, lactonase; beta 93.9 4.4 0.00015 38.8 19.4 211 38-283 50-269 (333)
101 3c5m_A Oligogalacturonate lyas 93.9 5.1 0.00018 39.1 21.9 114 165-285 167-281 (396)
102 1w6s_A Methanol dehydrogenase 93.9 6.7 0.00023 42.0 22.1 127 88-233 56-200 (599)
103 3pe7_A Oligogalacturonate lyas 93.8 5.5 0.00019 38.9 21.8 223 39-285 43-281 (388)
104 3g4e_A Regucalcin; six bladed 93.7 4.7 0.00016 38.3 18.9 213 33-283 14-235 (297)
105 1sq9_A Antiviral protein SKI8; 93.7 4.2 0.00014 39.8 19.1 71 200-280 197-270 (397)
106 1rwi_B Serine/threonine-protei 93.7 4.2 0.00014 37.4 22.6 194 36-280 27-225 (270)
107 2z3z_A Dipeptidyl aminopeptida 93.7 7.2 0.00025 41.9 22.5 194 59-279 234-437 (706)
108 1vyh_C Platelet-activating fac 93.5 4.4 0.00015 40.6 19.2 63 201-279 308-371 (410)
109 3v7d_B Cell division control p 93.5 7.1 0.00024 39.3 25.6 105 144-280 279-384 (464)
110 4g56_B MGC81050 protein; prote 93.3 2.1 7.2E-05 42.1 16.1 177 94-318 150-335 (357)
111 4gqb_B Methylosome protein 50; 93.3 5.1 0.00017 39.3 18.8 176 94-318 138-323 (344)
112 2pm9_A Protein WEB1, protein t 93.3 2.6 8.8E-05 41.6 16.8 157 95-281 126-298 (416)
113 3i2n_A WD repeat-containing pr 93.3 0.68 2.3E-05 44.7 12.1 194 40-278 27-244 (357)
114 1jmx_B Amine dehydrogenase; ox 93.3 1.8 6E-05 41.6 15.1 34 35-74 46-79 (349)
115 3e5z_A Putative gluconolactona 93.2 5.6 0.00019 37.4 22.6 249 33-334 29-288 (296)
116 3mkq_A Coatomer beta'-subunit; 93.2 2.2 7.6E-05 46.7 17.5 192 40-281 64-263 (814)
117 1flg_A Protein (quinoprotein e 93.2 8.4 0.00029 41.0 21.4 117 43-181 68-201 (582)
118 2vdu_B TRNA (guanine-N(7)-)-me 93.2 5.7 0.0002 40.1 19.5 158 40-231 111-276 (450)
119 3iz6_a 40S ribosomal protein R 92.9 7.9 0.00027 38.1 21.5 193 42-282 77-285 (380)
120 3dm0_A Maltose-binding peripla 92.8 8.8 0.0003 41.3 21.4 195 38-281 436-636 (694)
121 3hfq_A Uncharacterized protein 92.8 6 0.00021 38.0 18.3 217 37-291 91-333 (347)
122 3azo_A Aminopeptidase; POP fam 92.7 8.5 0.00029 40.9 20.9 217 39-285 137-377 (662)
123 1qhu_A Protein (hemopexin); be 92.7 2.2 7.6E-05 44.1 15.3 184 43-278 158-386 (460)
124 4e54_B DNA damage-binding prot 92.5 2.9 9.8E-05 42.3 16.0 197 36-279 123-329 (435)
125 1sq9_A Antiviral protein SKI8; 92.5 8.4 0.00029 37.5 20.4 107 166-281 207-326 (397)
126 1erj_A Transcriptional repress 92.5 9 0.00031 37.9 20.0 153 37-226 128-287 (393)
127 3vl1_A 26S proteasome regulato 92.4 9.1 0.00031 37.7 22.8 188 45-279 110-324 (420)
128 2xbg_A YCF48-like protein; pho 92.3 8.6 0.00029 37.3 21.7 226 35-314 38-268 (327)
129 1qks_A Cytochrome CD1 nitrite 92.3 11 0.00037 40.1 20.6 202 43-292 166-389 (567)
130 1nir_A Nitrite reductase; hemo 92.2 12 0.0004 39.4 20.8 220 43-314 148-389 (543)
131 1pjx_A Dfpase, DIISOPROPYLFLUO 92.1 5.3 0.00018 37.6 16.6 146 110-280 46-211 (314)
132 3ei3_B DNA damage-binding prot 92.0 8.7 0.0003 37.4 18.6 187 45-279 87-284 (383)
133 1pby_B Quinohemoprotein amine 91.9 6.6 0.00023 37.1 17.2 206 37-282 87-315 (337)
134 3ott_A Two-component system se 91.9 17 0.00057 39.7 23.5 180 60-284 82-267 (758)
135 3vl1_A 26S proteasome regulato 91.9 10 0.00035 37.3 20.4 134 60-230 78-216 (420)
136 2z2n_A Virginiamycin B lyase; 91.8 8 0.00027 35.9 26.2 197 36-283 18-218 (299)
137 1pjx_A Dfpase, DIISOPROPYLFLUO 91.8 8.6 0.00029 36.1 20.7 195 60-279 46-258 (314)
138 2pm9_A Protein WEB1, protein t 91.7 7.1 0.00024 38.3 17.7 204 42-278 23-250 (416)
139 2vdu_B TRNA (guanine-N(7)-)-me 91.6 8.5 0.00029 38.8 18.5 160 95-281 210-397 (450)
140 2xdw_A Prolyl endopeptidase; a 91.6 17 0.00058 39.2 25.6 197 59-285 207-424 (710)
141 4gqb_B Methylosome protein 50; 91.6 7.6 0.00026 38.0 17.5 185 41-278 137-332 (344)
142 2ecf_A Dipeptidyl peptidase IV 91.6 9.3 0.00032 41.3 19.7 111 166-284 263-375 (741)
143 1yfq_A Cell cycle arrest prote 91.5 9.5 0.00033 36.1 19.1 187 40-277 20-225 (342)
144 3v7d_B Cell division control p 91.4 13 0.00043 37.4 20.8 146 43-231 280-426 (464)
145 1yr2_A Prolyl oligopeptidase; 91.4 13 0.00046 40.4 20.9 214 41-283 172-401 (741)
146 2bkl_A Prolyl endopeptidase; m 91.3 6.5 0.00022 42.5 18.1 261 42-330 78-349 (695)
147 4a11_B DNA excision repair pro 91.3 6.7 0.00023 38.2 16.8 225 43-318 111-357 (408)
148 1pgu_A Actin interacting prote 91.3 15 0.00053 38.0 21.7 105 166-284 183-290 (615)
149 2pbi_B Guanine nucleotide-bind 91.2 12 0.0004 36.5 24.4 97 200-318 209-307 (354)
150 1flg_A Protein (quinoprotein e 91.1 18 0.00061 38.4 24.0 123 89-231 63-200 (582)
151 2qc5_A Streptogramin B lactona 91.1 9.6 0.00033 35.3 27.3 197 37-284 24-224 (300)
152 2pbi_B Guanine nucleotide-bind 91.0 12 0.00041 36.4 19.6 134 60-228 176-317 (354)
153 3jro_A Fusion protein of prote 90.9 3.9 0.00013 44.9 16.0 105 95-227 21-133 (753)
154 2ynn_A Coatomer subunit beta'; 90.9 6.9 0.00024 37.1 16.0 67 200-282 197-264 (304)
155 1pex_A Collagenase-3, MMP-13; 90.8 9.4 0.00032 34.8 15.9 154 89-282 28-197 (207)
156 3sfz_A APAF-1, apoptotic pepti 90.8 2.3 7.8E-05 49.4 14.5 193 37-279 966-1160(1249)
157 3iuj_A Prolyl endopeptidase; h 90.7 21 0.00071 38.6 25.3 194 60-284 155-366 (693)
158 2aq5_A Coronin-1A; WD40 repeat 90.7 9.9 0.00034 37.5 17.5 158 96-285 145-309 (402)
159 1q7f_A NHL, brain tumor CG1071 90.6 11 0.00037 35.1 20.5 156 94-283 40-200 (286)
160 3mmy_A MRNA export factor; mRN 90.6 12 0.00041 35.6 17.6 52 60-121 108-162 (368)
161 2dg1_A DRP35, lactonase; beta 90.5 2.1 7.3E-05 41.1 12.0 155 94-277 55-213 (333)
162 1rwi_B Serine/threonine-protei 90.4 9.2 0.00031 35.0 16.0 182 45-277 79-264 (270)
163 2aq5_A Coronin-1A; WD40 repeat 90.2 4.7 0.00016 39.9 14.5 197 45-284 145-349 (402)
164 3sfz_A APAF-1, apoptotic pepti 90.0 12 0.00042 43.1 19.9 200 37-284 620-835 (1249)
165 4ggc_A P55CDC, cell division c 90.0 12 0.00042 34.8 18.6 86 218-318 222-307 (318)
166 1yfq_A Cell cycle arrest prote 90.0 12 0.00039 35.5 16.8 66 40-119 65-131 (342)
167 2z3z_A Dipeptidyl aminopeptida 89.8 24 0.00081 37.7 27.7 154 165-333 234-392 (706)
168 3dwl_C Actin-related protein 2 89.6 2.6 8.8E-05 41.2 11.9 151 94-278 22-178 (377)
169 4aez_A CDC20, WD repeat-contai 89.4 17 0.00059 35.7 24.3 180 60-283 113-299 (401)
170 4aow_A Guanine nucleotide-bind 89.4 5.5 0.00019 37.8 14.0 149 94-281 97-250 (340)
171 4gga_A P55CDC, cell division c 89.4 18 0.00062 35.9 21.9 81 60-153 125-207 (420)
172 4e54_B DNA damage-binding prot 89.4 2 6.8E-05 43.4 11.1 147 94-279 131-284 (435)
173 3iz6_a 40S ribosomal protein R 89.2 17 0.0006 35.5 21.2 185 96-318 171-367 (380)
174 3odt_A Protein DOA1; ubiquitin 89.2 14 0.00047 34.3 21.2 70 199-285 194-263 (313)
175 4a11_B DNA excision repair pro 89.2 16 0.00053 35.4 17.4 150 94-280 111-279 (408)
176 2z2n_A Virginiamycin B lyase; 89.2 14 0.00047 34.2 23.6 191 38-279 104-297 (299)
177 3e5z_A Putative gluconolactona 89.1 15 0.0005 34.4 17.5 177 60-279 90-288 (296)
178 3k26_A Polycomb protein EED; W 88.9 16 0.00056 34.6 20.2 104 45-176 86-193 (366)
179 3ei3_B DNA damage-binding prot 88.7 18 0.00063 35.0 19.7 145 96-277 87-236 (383)
180 2ynn_A Coatomer subunit beta'; 88.5 17 0.00057 34.3 21.2 220 41-318 23-251 (304)
181 3g4e_A Regucalcin; six bladed 88.4 17 0.00058 34.3 16.6 151 94-280 24-185 (297)
182 3no2_A Uncharacterized protein 88.3 17 0.00059 34.2 16.8 150 94-282 4-161 (276)
183 1yr2_A Prolyl oligopeptidase; 88.1 15 0.00051 40.0 17.9 161 94-284 278-448 (741)
184 3bg1_A Protein SEC13 homolog; 88.0 12 0.00042 35.5 15.4 69 41-125 23-96 (316)
185 2hes_X YDR267CP; beta-propelle 88.0 19 0.00065 34.4 20.0 190 94-318 118-320 (330)
186 1erj_A Transcriptional repress 87.8 22 0.00076 34.9 22.1 148 94-278 134-288 (393)
187 3scy_A Hypothetical bacterial 87.8 20 0.00069 34.5 25.7 74 38-119 56-129 (361)
188 2ymu_A WD-40 repeat protein; u 87.8 27 0.00093 35.9 19.3 175 94-318 396-572 (577)
189 3odt_A Protein DOA1; ubiquitin 87.5 18 0.00061 33.5 21.1 194 37-281 23-218 (313)
190 2hes_X YDR267CP; beta-propelle 87.4 21 0.00071 34.2 17.6 152 94-277 164-328 (330)
191 2xyi_A Probable histone-bindin 87.3 6.7 0.00023 39.4 13.5 60 201-277 290-353 (430)
192 2ghs_A AGR_C_1268P; regucalcin 87.2 16 0.00055 35.1 15.8 145 95-276 61-209 (326)
193 3b7f_A Glycosyl hydrolase, BNR 87.1 18 0.00063 35.8 16.5 192 62-285 33-270 (394)
194 1xfd_A DIP, dipeptidyl aminope 86.9 26 0.00089 37.4 18.8 65 166-232 228-295 (723)
195 3ott_A Two-component system se 86.9 7.3 0.00025 42.6 14.5 144 94-277 482-626 (758)
196 1itv_A MMP9; adaptive molecula 86.7 17 0.0006 32.6 16.9 150 89-279 11-176 (195)
197 3dr2_A Exported gluconolactona 86.4 21 0.00073 33.7 16.0 217 35-284 48-274 (305)
198 3iuj_A Prolyl endopeptidase; h 86.4 27 0.00093 37.6 18.6 168 36-234 238-413 (693)
199 3azo_A Aminopeptidase; POP fam 86.3 16 0.00053 38.8 16.4 170 39-234 195-377 (662)
200 2gop_A Trilobed protease; beta 86.2 10 0.00034 36.3 13.6 193 59-284 42-258 (347)
201 2xbg_A YCF48-like protein; pho 85.8 26 0.00089 33.8 21.5 192 44-285 90-287 (327)
202 3o4h_A Acylamino-acid-releasin 84.8 18 0.0006 37.8 15.7 97 169-281 135-231 (582)
203 1xfd_A DIP, dipeptidyl aminope 84.7 45 0.0015 35.5 20.0 109 61-182 38-150 (723)
204 2mad_H Methylamine dehydrogena 84.6 33 0.0011 33.9 23.5 82 36-123 70-160 (373)
205 1itv_A MMP9; adaptive molecula 84.3 23 0.00078 31.8 16.4 147 43-230 16-178 (195)
206 2qc5_A Streptogramin B lactona 84.2 25 0.00087 32.3 26.9 195 38-283 67-265 (300)
207 2pm7_B Protein transport prote 84.1 28 0.00095 32.6 20.7 26 95-125 67-92 (297)
208 3dm0_A Maltose-binding peripla 83.9 17 0.00057 39.1 15.3 149 94-279 441-594 (694)
209 3fvz_A Peptidyl-glycine alpha- 83.7 31 0.0011 32.9 31.0 236 60-331 69-321 (329)
210 3hrp_A Uncharacterized protein 83.5 38 0.0013 33.8 28.2 210 36-285 134-362 (409)
211 1gen_A Gelatinase A; hydrolase 83.0 28 0.00095 31.8 15.8 154 88-279 34-204 (218)
212 1pgu_A Actin interacting prote 83.0 45 0.0016 34.3 22.9 143 95-277 456-614 (615)
213 1su3_A Interstitial collagenas 82.4 37 0.0013 34.7 16.4 155 89-283 267-438 (450)
214 2xyi_A Probable histone-bindin 81.2 35 0.0012 33.9 15.7 60 200-277 243-309 (430)
215 2pm7_B Protein transport prote 81.1 36 0.0012 31.8 16.2 72 201-285 219-294 (297)
216 3ju4_A Endo-N-acetylneuraminid 80.5 34 0.0012 34.4 14.2 184 119-317 269-483 (670)
217 3pe7_A Oligogalacturonate lyas 79.8 44 0.0015 32.1 19.2 155 110-285 60-233 (388)
218 3f3f_A Nucleoporin SEH1; struc 78.4 42 0.0015 31.0 24.1 63 201-278 182-250 (351)
219 4h5i_A Guanine nucleotide-exch 78.1 52 0.0018 31.9 19.3 200 40-277 142-343 (365)
220 3lrv_A PRE-mRNA-splicing facto 77.8 42 0.0014 32.0 14.6 66 200-280 138-204 (343)
221 3b7f_A Glycosyl hydrolase, BNR 77.8 56 0.0019 32.1 19.9 212 43-285 67-330 (394)
222 3o4h_A Acylamino-acid-releasin 76.6 15 0.00052 38.3 11.6 193 41-283 119-320 (582)
223 2hz6_A Endoplasmic reticulum t 76.5 1.1 3.6E-05 44.9 2.3 69 36-124 3-75 (369)
224 2mad_H Methylamine dehydrogena 76.2 62 0.0021 31.8 28.7 75 41-122 30-109 (373)
225 1pex_A Collagenase-3, MMP-13; 75.9 46 0.0016 30.1 14.0 110 39-179 75-196 (207)
226 2ymu_A WD-40 repeat protein; u 75.6 75 0.0026 32.5 20.6 174 94-317 355-530 (577)
227 1sqj_A OXG-RCBH, oligoxylogluc 75.1 1E+02 0.0035 33.8 29.3 202 61-285 38-277 (789)
228 3i2n_A WD repeat-containing pr 74.3 25 0.00085 33.2 11.7 155 95-283 31-205 (357)
229 1gen_A Gelatinase A; hydrolase 73.1 45 0.0015 30.4 12.4 113 37-177 81-204 (218)
230 2xzm_R RACK1; ribosome, transl 72.7 67 0.0023 30.5 20.5 61 45-120 89-150 (343)
231 3lrv_A PRE-mRNA-splicing facto 72.0 69 0.0023 30.4 17.9 104 144-279 138-246 (343)
232 3dr2_A Exported gluconolactona 71.4 53 0.0018 30.8 13.2 103 60-182 169-274 (305)
233 3ba0_A Macrophage metalloelast 71.3 83 0.0029 31.1 16.8 155 89-282 185-355 (365)
234 2fp8_A Strictosidine synthase; 71.0 71 0.0024 30.1 18.7 204 38-278 85-314 (322)
235 3mmy_A MRNA export factor; mRN 70.5 46 0.0016 31.3 12.6 25 200-230 284-308 (368)
236 1npe_A Nidogen, entactin; glyc 70.4 64 0.0022 29.4 25.8 200 35-283 39-244 (267)
237 3k26_A Polycomb protein EED; W 69.6 74 0.0025 29.8 16.5 98 201-318 85-184 (366)
238 1k32_A Tricorn protease; prote 69.2 1.5E+02 0.0052 33.3 22.6 194 45-285 215-417 (1045)
239 3hxj_A Pyrrolo-quinoline quino 68.8 75 0.0026 29.6 17.1 138 92-281 105-249 (330)
240 1k32_A Tricorn protease; prote 68.6 1.6E+02 0.0054 33.2 23.6 154 94-284 213-375 (1045)
241 4d9s_A UVB-resistance protein 68.4 98 0.0033 30.7 18.4 19 33-51 77-95 (406)
242 2ghs_A AGR_C_1268P; regucalcin 62.9 1E+02 0.0036 29.1 18.1 112 145-283 61-174 (326)
243 1qhu_A Protein (hemopexin); be 62.8 1.4E+02 0.0048 30.5 18.3 59 200-278 158-216 (460)
244 2fp8_A Strictosidine synthase; 61.6 1.1E+02 0.0037 28.8 18.7 201 60-284 40-276 (322)
245 3fvz_A Peptidyl-glycine alpha- 61.5 1.1E+02 0.0038 28.9 27.0 210 38-277 96-322 (329)
246 3frx_A Guanine nucleotide-bind 61.1 1.1E+02 0.0037 28.7 17.1 144 94-279 76-229 (319)
247 3frx_A Guanine nucleotide-bind 59.2 1.2E+02 0.004 28.5 24.3 145 41-228 75-229 (319)
248 2xe4_A Oligopeptidase B; hydro 56.8 1.8E+02 0.0061 31.5 15.4 168 38-234 277-466 (751)
249 1ck7_A Protein (gelatinase A); 55.8 82 0.0028 33.7 11.9 152 89-278 448-616 (631)
250 3ba0_A Macrophage metalloelast 55.5 1.4E+02 0.0048 29.4 13.0 108 43-180 236-355 (365)
251 3c7x_A Matrix metalloproteinas 55.3 1.1E+02 0.0039 27.1 16.2 152 89-279 10-177 (196)
252 3f3f_A Nucleoporin SEH1; struc 55.1 1.3E+02 0.0043 27.6 21.1 29 251-285 317-346 (351)
253 3c7x_A Matrix metalloproteinas 54.8 1.1E+02 0.0036 27.3 11.0 106 42-177 60-177 (196)
254 2xe4_A Oligopeptidase B; hydro 54.8 1.6E+02 0.0055 31.9 14.6 98 165-275 294-398 (751)
255 1fwx_A Nitrous oxide reductase 54.6 1.1E+02 0.0038 32.4 12.6 204 42-277 100-361 (595)
256 1su3_A Interstitial collagenas 54.0 1.9E+02 0.0066 29.3 17.9 149 43-232 272-438 (450)
257 2p4o_A Hypothetical protein; p 52.9 1.5E+02 0.005 27.7 21.5 207 29-283 29-247 (306)
258 3gre_A Serine/threonine-protei 52.0 1.8E+02 0.006 28.3 23.4 153 94-279 181-361 (437)
259 1z68_A Fibroblast activation p 51.7 44 0.0015 35.7 9.4 102 60-182 36-146 (719)
260 2gop_A Trilobed protease; beta 49.3 1.7E+02 0.0057 27.3 19.2 181 60-284 152-337 (347)
261 3sjl_D Methylamine dehydrogena 47.4 2.2E+02 0.0076 28.2 21.3 74 199-283 290-369 (386)
262 1ck7_A Protein (gelatinase A); 47.2 2.3E+02 0.0078 30.2 13.7 153 35-227 446-616 (631)
263 2p4o_A Hypothetical protein; p 47.0 1.8E+02 0.0062 27.0 19.9 140 61-232 96-247 (306)
264 3dw8_B Serine/threonine-protei 45.8 2.2E+02 0.0074 27.5 20.4 22 202-229 240-261 (447)
265 1hxn_A Hemopexin, HPX; heme, b 45.7 1.7E+02 0.0059 26.4 12.1 108 37-175 22-144 (219)
266 1nr0_A Actin interacting prote 45.4 2.8E+02 0.0096 28.7 22.7 194 44-283 160-361 (611)
267 4ggc_A P55CDC, cell division c 43.9 1.9E+02 0.0064 26.3 19.4 73 35-123 28-102 (318)
268 1npe_A Nidogen, entactin; glyc 43.7 1.8E+02 0.0063 26.1 21.6 153 41-232 88-244 (267)
269 2xzm_R RACK1; ribosome, transl 42.6 2.2E+02 0.0075 26.7 17.8 24 94-122 87-110 (343)
270 1hxn_A Hemopexin, HPX; heme, b 42.3 2E+02 0.0067 26.1 11.1 141 93-277 27-197 (219)
271 1z68_A Fibroblast activation p 42.2 1.3E+02 0.0043 32.0 11.1 107 110-233 36-146 (719)
272 2cn3_A Xyloglucanase, beta-1,4 40.0 3.8E+02 0.013 28.8 28.2 233 61-314 46-321 (737)
273 1n7d_A LDL receptor, low-densi 39.5 3.8E+02 0.013 28.6 15.7 180 61-283 387-577 (699)
274 3bg1_A Protein SEC13 homolog; 39.4 55 0.0019 30.8 6.9 101 200-318 24-128 (316)
275 2oaj_A Protein SNI1; WD40 repe 38.4 4.4E+02 0.015 29.1 24.2 199 37-282 22-247 (902)
276 2oiz_A Aromatic amine dehydrog 37.8 2.3E+02 0.0078 27.2 11.4 70 38-120 260-335 (361)
277 2ece_A 462AA long hypothetical 36.3 3.6E+02 0.012 27.4 17.3 174 94-284 95-296 (462)
278 3vu4_A KMHSV2; beta-propeller 36.0 2.9E+02 0.0098 26.2 22.9 56 251-317 206-262 (355)
279 2oiz_A Aromatic amine dehydrog 35.9 3E+02 0.01 26.3 21.7 84 36-123 54-144 (361)
280 2p9w_A MAL S 1 allergenic prot 34.1 3.3E+02 0.011 26.4 21.7 229 60-315 35-304 (334)
281 3hxj_A Pyrrolo-quinoline quino 33.9 2.8E+02 0.0095 25.4 18.9 166 60-282 117-290 (330)
282 3lp9_A LS-24; SEED albumin, pl 33.7 1.3E+02 0.0045 27.4 8.2 61 94-176 129-202 (227)
283 3m0c_C LDL receptor, low-densi 33.2 5.1E+02 0.018 28.3 23.3 202 61-313 405-619 (791)
284 4a5s_A Dipeptidyl peptidase 4 32.3 4.8E+02 0.016 27.7 17.0 66 60-126 36-108 (740)
285 3gre_A Serine/threonine-protei 31.3 3.6E+02 0.012 25.9 15.4 110 144-282 181-297 (437)
286 3sre_A PON1, serum paraoxonase 31.1 3.8E+02 0.013 26.1 14.5 149 109-277 82-252 (355)
287 4hvt_A Ritya.17583.B, post-pro 30.6 5.4E+02 0.018 27.7 14.4 149 59-234 268-437 (711)
288 4d9s_A UVB-resistance protein 29.8 4.1E+02 0.014 26.0 15.2 18 33-51 182-199 (406)
289 4a5s_A Dipeptidyl peptidase 4 29.6 5.3E+02 0.018 27.3 14.4 110 110-233 36-148 (740)
290 3oyo_A Hemopexin fold protein 29.6 1.7E+02 0.0057 26.7 8.1 64 40-118 124-197 (225)
291 3oyo_A Hemopexin fold protein 28.0 3.4E+02 0.012 24.5 16.7 103 93-225 69-197 (225)
292 1nr0_A Actin interacting prote 27.4 5.2E+02 0.018 26.5 21.5 111 94-232 250-361 (611)
293 2p9w_A MAL S 1 allergenic prot 27.0 4.4E+02 0.015 25.5 13.5 148 35-209 139-304 (334)
294 4hvt_A Ritya.17583.B, post-pro 26.6 6.2E+02 0.021 27.2 21.3 105 164-281 267-385 (711)
295 3sjl_D Methylamine dehydrogena 24.0 3.2E+02 0.011 27.0 9.6 76 39-124 287-368 (386)
296 3hrp_A Uncharacterized protein 23.7 5.2E+02 0.018 25.2 25.0 168 37-234 176-362 (409)
297 1fwx_A Nitrous oxide reductase 20.5 1.6E+02 0.0053 31.3 6.7 140 29-182 274-438 (595)
298 3c75_H MADH, methylamine dehyd 20.3 3.1E+02 0.011 27.4 8.8 88 35-132 322-416 (426)
299 3a0f_A Xyloglucanase; beta-pro 20.2 8.2E+02 0.028 26.3 24.8 204 61-285 44-292 (763)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=8.8e-44 Score=357.67 Aligned_cols=283 Identities=18% Similarity=0.315 Sum_probs=239.2
Q ss_pred CCCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCC--
Q 010011 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGT-- 103 (520)
Q Consensus 26 g~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~-- 103 (520)
++.|.+|.+|+++.+ +++||++||.. ....+++++||+.+++|..++ ++|.+|.+|+++.++++||++||.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~i~v~GG~~--~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~ 81 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV--GRLIYTAGGYF--RQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNN 81 (308)
T ss_dssp ------------CCC--CCCEEEECCBS--SSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEE
T ss_pred ccCCeeeCCccccCC--CCEEEEEeCcC--CCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcC
Confidence 456779999999988 66899999982 346789999999999999974 889999999999999999999998
Q ss_pred --CCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEc
Q 010011 104 --DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (520)
Q Consensus 104 --~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v 181 (520)
++...++++++||+.+++|+.++ ++|.+|..|+++.++++|||+||.. ....++++++||+.+++|+.+
T Consensus 82 ~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 82 SPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSH------GCIHHNSVERYEPERDEWHLV 152 (308)
T ss_dssp ETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEE------TTEECCCEEEEETTTTEEEEC
T ss_pred CCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCC------CCcccccEEEECCCCCeEeEC
Confidence 55567899999999999999987 7899999999999999999999963 335678999999999999999
Q ss_pred ccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEeccc
Q 010011 182 TTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 261 (520)
Q Consensus 182 ~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~ 261 (520)
+ ++|.+|..|+++.++++||++||.+... .++++++||+.+++|+.+.. +|.+|.+|+++.++++|||+||..
T Consensus 153 ~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~ 225 (308)
T 1zgk_A 153 A---PMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITA---MNTIRSGAGVCVLHNCIYAAGGYD 225 (308)
T ss_dssp C---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBC
T ss_pred C---CCCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCC---CCCccccceEEEECCEEEEEeCCC
Confidence 7 6899999999999999999999987665 48999999999999999976 889999999999999999999987
Q ss_pred CCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccccccccc
Q 010011 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (520)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (520)
.. ...+++++||+++++|+.+.+ .|.+|..++++.+ +++|||+||.+.. ..+++++.|++....|..+..
T Consensus 226 ~~-~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 226 GQ-DQLNSVERYDVETETWTFVAP---MKHRRSALGITVH----QGRIYVLGGYDGH-TFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp SS-SBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE----TTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEE
T ss_pred CC-CccceEEEEeCCCCcEEECCC---CCCCccceEEEEE----CCEEEEEcCcCCC-cccceEEEEcCCCCEEeecCC
Confidence 53 458999999999999999875 4778888776554 7899999998764 567899999999988877644
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.2e-42 Score=341.44 Aligned_cols=268 Identities=19% Similarity=0.302 Sum_probs=236.1
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
+++||++||.+.. ..+++++||+.+++|.++. ++|.+|..|+++.++++||++||.++...++++++||+.+++|
T Consensus 15 ~~~i~v~GG~~~~--~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPK--AIRSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSS--BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCC--CCCcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCce
Confidence 5689999998653 5688999999999999975 8899999999999999999999998878889999999999999
Q ss_pred EeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCE
Q 010011 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~ 202 (520)
+.++ ++|.+|.+|+++.++++|||+||.. ....++++++||+.+++|+.++ ++|.+|..|+++.++++
T Consensus 90 ~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~ 157 (302)
T 2xn4_A 90 TSVA---NMRDRRSTLGAAVLNGLLYAVGGFD------GSTGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGL 157 (302)
T ss_dssp EEEC---CCSSCCBSCEEEEETTEEEEEEEEC------SSCEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE
T ss_pred eeCC---CCCccccceEEEEECCEEEEEcCCC------CCccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCE
Confidence 9987 7899999999999999999999963 3346799999999999999997 67899999999999999
Q ss_pred EEEEecCCCCC-cccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 203 IIVIGGEDGHD-YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 203 lyv~GG~~~~~-~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
||++||.+... ..++++++||+.+++|+.+.. +|.+|.+|+++.++++|||+||... ....+++++||+++++|+
T Consensus 158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDG-PLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp EEEECCEETTTTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBSS-SSBCCCEEEEETTTTEEE
T ss_pred EEEEeCCCCCCCccccEEEEEeCCCCcEEECCC---CccccccccEEEECCEEEEECCCCC-CcccceEEEEeCCCCCEe
Confidence 99999986653 458899999999999999976 8899999999999999999999865 345789999999999999
Q ss_pred EeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecccccccccc
Q 010011 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLE 339 (520)
Q Consensus 282 ~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~ 339 (520)
.+..+ |.+|..++++.+ +++||++||.+.. ..+++++.+++....|..++
T Consensus 234 ~~~~~---~~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 234 QVADM---NMCRRNAGVCAV----NGLLYVVGGDDGS-CNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EECCC---SSCCBSCEEEEE----TTEEEEECCBCSS-SBCCCEEEEETTTTEEEECS
T ss_pred eCCCC---CCccccCeEEEE----CCEEEEECCcCCC-cccccEEEEcCCCCeEEECC
Confidence 99754 667877765543 8899999998765 45789999999988886654
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=340.18 Aligned_cols=266 Identities=20% Similarity=0.336 Sum_probs=235.2
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEE
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 123 (520)
++||++||... .+++++||+.+++|..+. ++|.+|.+|+++.++++||++||.+ ...++++++||+.+++|+
T Consensus 12 ~~l~~~GG~~~----~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 12 DYRIALFGGSQ----PQSCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CEEEEEECCSS----TTSEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEE
T ss_pred ceEEEEeCCCC----CceEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEE
Confidence 57999999765 588999999999999975 7899999999999999999999998 667899999999999999
Q ss_pred eecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEE
Q 010011 124 SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKI 203 (520)
Q Consensus 124 ~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~l 203 (520)
.++ ++|.+|.+|+++.++++|||+||.. .....++++++||+.+++|+.+. ++|.+|..|+++.++++|
T Consensus 84 ~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-----~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i 152 (306)
T 3ii7_A 84 SKL---GPPTPRDSLAACAAEGKIYTSGGSE-----VGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLI 152 (306)
T ss_dssp EEE---CCSSCCBSCEEEEETTEEEEECCBB-----TTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEE
T ss_pred ECC---CCCccccceeEEEECCEEEEECCCC-----CCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEE
Confidence 987 7899999999999999999999963 24456789999999999999997 789999999999999999
Q ss_pred EEEecCCCCCc---ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcE
Q 010011 204 IVIGGEDGHDY---YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 204 yv~GG~~~~~~---~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
|++||...... .++++++||+++++|+.+.. +|.+|.+|+++.++++|||+||.... ..++++++||+++++|
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEE
T ss_pred EEECCCCCCCCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcE
Confidence 99999865542 38999999999999999986 88999999999999999999998754 4578999999999999
Q ss_pred EEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccccccccc
Q 010011 281 TKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (520)
Q Consensus 281 ~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (520)
+.+.. .|.+|..++++.+ +++|||+||.+.. ..+++++.+++....|..+..
T Consensus 229 ~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 229 KMVSP---MPWKGVTVKCAAV----GSIVYVLAGFQGV-GRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EECCC---CSCCBSCCEEEEE----TTEEEEEECBCSS-SBCCEEEEEETTTTEEEEEEE
T ss_pred EECCC---CCCCccceeEEEE----CCEEEEEeCcCCC-eeeeeEEEEcCCCCeEEeCCC
Confidence 99865 4778888876554 8899999998765 467899999999998877654
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-41 Score=338.33 Aligned_cols=270 Identities=21% Similarity=0.368 Sum_probs=237.2
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe-
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT- 121 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~- 121 (520)
+++||++||+.......+++++||+.+++|..++ ++|.+|.+|+++.++++||++||.++...++++++||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 5689999995444446789999999999999975 788899999999999999999999877788999999999999
Q ss_pred --EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee
Q 010011 122 --WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (520)
Q Consensus 122 --W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~ 199 (520)
|+.++ ++|.+|..|+++.++++|||+||.. ....++++++||+.+++|+.++ ++|.+|..|+++.+
T Consensus 91 ~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~------~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~ 158 (301)
T 2vpj_A 91 GVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFD------GSRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVA 158 (301)
T ss_dssp CCCEEEC---CCSSCCBSCEEEEETTEEEEECCBC------SSCBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEE
T ss_pred CeeEECC---CCCCCccceeEEEECCEEEEEcccC------CCcccceEEEEcCCCCeEEECC---CCCCCcccceEEEE
Confidence 99986 7899999999999999999999964 2335789999999999999997 67899999999999
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
+++||++||.+... .++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||.... ...+++++||+++++
T Consensus 159 ~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 159 SGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEECCBCSSC-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCCC---CCcccccceEEEECCEEEEEeCCCCC-cccceEEEEeCCCCc
Confidence 99999999987654 78999999999999999976 88999999999999999999998754 347899999999999
Q ss_pred EEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccccccccc
Q 010011 280 WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (520)
Q Consensus 280 W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (520)
|+.+.. .|.+|..|+++.+ +++||++||.+.. ..+++++.++.....|..+..
T Consensus 234 W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 234 WTTVTS---MTTPRCYVGATVL----RGRLYAIAGYDGN-SLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp EEEECC---CSSCCBSCEEEEE----TTEEEEECCBCSS-SBEEEEEEEETTTTEEEEEEE
T ss_pred EEECCC---CCCcccceeEEEE----CCEEEEEcCcCCC-cccccEEEEcCCCCeEEEcCC
Confidence 999965 4778888776544 7899999998765 467899999999888876644
No 5
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3.3e-41 Score=345.44 Aligned_cols=292 Identities=20% Similarity=0.231 Sum_probs=231.0
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECC--CCeEEeeeccCCCC-CCCCcceEEEECCEEEEEcCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~~l~~~g~~P-~~R~~hs~~~~~~~iyv~GG~ 103 (520)
+.|.+|.+|+++++ +++|||+||... +++++||+. +++|+.++ ++| .+|.+|++++++++|||+||.
T Consensus 5 ~lP~~r~~~~~~~~--~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~ 74 (357)
T 2uvk_A 5 ETPVPFKSGTGAID--NDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGI 74 (357)
T ss_dssp CCSSCCCSCEEEEE--TTEEEEECGGGT-----TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCE
T ss_pred CCCccccceEEEEE--CCEEEEEeCcCC-----CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCC
Confidence 46889999999888 678999999753 479999998 49999975 688 899999999999999999998
Q ss_pred -C----CCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCC--------------------
Q 010011 104 -D----GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSN-------------------- 158 (520)
Q Consensus 104 -~----~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~-------------------- 158 (520)
+ ....++++|+||+.+++|++++... |.+|.+|+++.++++||||||+.....
T Consensus 75 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 75 GKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp EECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 3 2346899999999999999987322 599999999999999999999632100
Q ss_pred --------CCCcceeceeEEEEcCcceEEEcccCCCCCCCCcc-eeEEeeCCEEEEEecCCCCCcccCceEEEEC--CCC
Q 010011 159 --------TNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS-HTCSSWKNKIIVIGGEDGHDYYLSDVHILDT--DTL 227 (520)
Q Consensus 159 --------~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~-h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~--~t~ 227 (520)
.....+++++++||+.+++|+.+. ++|.+|.. |++++++++|||+||........+++++||+ +++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 000124689999999999999996 56765554 9999999999999998766557889999987 999
Q ss_pred cEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCC----------------CCccCcEEEEecCCCcEEEeeeCCCCCC
Q 010011 228 TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS----------------QNLYDDLYMIDVDSGLWTKVITTGEGPS 291 (520)
Q Consensus 228 ~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~----------------~~~~~dv~~yd~~~~~W~~l~~~~~~p~ 291 (520)
+|+.+... ..|.+|.+|+++.++++|||+||.... ...++++++||+++++|+.+..+ |.
T Consensus 230 ~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~ 305 (357)
T 2uvk_A 230 KWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQ 305 (357)
T ss_dssp EEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC---SS
T ss_pred cEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC---CC
Confidence 99999762 124456788899999999999997532 12346899999999999999764 77
Q ss_pred CceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccccccccch
Q 010011 292 ARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKL 341 (520)
Q Consensus 292 ~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~l 341 (520)
+|+.|+++. .+++|||+||++.....++|+|.|+....+|.++..+
T Consensus 306 ~r~~~~~~~----~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 306 GRAYGVSLP----WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp CCBSSEEEE----ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred CcccceeEE----eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 888877654 3889999999998877889999999888887666543
No 6
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.7e-40 Score=332.18 Aligned_cols=249 Identities=21% Similarity=0.375 Sum_probs=221.2
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcC---CCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYG---KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGT 103 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~---~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~ 103 (520)
..|.+|.+|+++++ +++||++||.. ......+++++||+.+++|++++ ++|.+|..|+++.++++||++||.
T Consensus 56 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~ 130 (308)
T 1zgk_A 56 DLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGS 130 (308)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCE
T ss_pred CCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCC
Confidence 57889999999988 66899999983 23335688999999999999975 789999999999999999999999
Q ss_pred CCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEccc
Q 010011 104 DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (520)
Q Consensus 104 ~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~ 183 (520)
++...++++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||... ...++++++||+.+++|+.+.
T Consensus 131 ~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~- 200 (308)
T 1zgk_A 131 HGCIHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGFDG------TNRLNSAECYYPERNEWRMIT- 200 (308)
T ss_dssp ETTEECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCS------SCBCCCEEEEETTTTEEEECC-
T ss_pred CCCcccccEEEECCCCCeEeECC---CCCccccceEEEEECCEEEEEeCCCC------CCcCceEEEEeCCCCeEeeCC-
Confidence 88778899999999999999987 78999999999999999999999642 223789999999999999997
Q ss_pred CCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCC
Q 010011 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (520)
Q Consensus 184 ~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~ 263 (520)
++|.+|..|+++.++++|||+||.+... ..+++++||+++++|+.+.. +|.+|..|+++.++++|||+||...
T Consensus 201 --~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~- 273 (308)
T 1zgk_A 201 --AMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAP---MKHRRSALGITVHQGRIYVLGGYDG- 273 (308)
T ss_dssp --CCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCS-
T ss_pred --CCCCccccceEEEECCEEEEEeCCCCCC-ccceEEEEeCCCCcEEECCC---CCCCccceEEEEECCEEEEEcCcCC-
Confidence 6889999999999999999999987654 58999999999999999986 8899999999999999999999865
Q ss_pred CCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeee
Q 010011 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDC 300 (520)
Q Consensus 264 ~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~ 300 (520)
....+++++||+++++|+.+..+ |.+|+.+++++
T Consensus 274 ~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~ 307 (308)
T 1zgk_A 274 HTFLDSVECYDPDTDTWSEVTRM---TSGRSGVGVAV 307 (308)
T ss_dssp SCBCCEEEEEETTTTEEEEEEEC---SSCCBSCEEEE
T ss_pred CcccceEEEEcCCCCEEeecCCC---CCCcccceeEe
Confidence 45678999999999999999765 77888887543
No 7
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.8e-40 Score=329.68 Aligned_cols=252 Identities=19% Similarity=0.328 Sum_probs=222.6
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM 106 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~ 106 (520)
..|.+|.+|+++++ +++||++||..... ..+++++||+.+++|+.++ ++|.+|..|+++.++++||++||.++.
T Consensus 47 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~ 120 (302)
T 2xn4_A 47 ELPSRRCRAGMVYM--AGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGS 120 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEESCBCSSS-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSS
T ss_pred cCCcccccceEEEE--CCEEEEEeCcCCCc-cccceEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCC
Confidence 57889999999988 66899999986543 6688999999999999976 789999999999999999999999887
Q ss_pred CCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCC
Q 010011 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~ 186 (520)
..++++++||+.+++|+.++ ++|.+|..|+++.++++||++||.... .....+++++||+.+++|+.+. +
T Consensus 121 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~yd~~~~~W~~~~---~ 190 (302)
T 2xn4_A 121 TGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVA----SRQCLSTVECYNATTNEWTYIA---E 190 (302)
T ss_dssp CEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETT----TTEECCCEEEEETTTTEEEEEC---C
T ss_pred ccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCC----CCccccEEEEEeCCCCcEEECC---C
Confidence 78899999999999999987 789999999999999999999997422 2246789999999999999997 6
Q ss_pred CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCc
Q 010011 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (520)
Q Consensus 187 ~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~ 266 (520)
+|.+|..|++++++++||++||.++.. ..+++++||+++++|+.+.. +|.+|.+|+++.++++|||+||.... ..
T Consensus 191 ~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~i~v~GG~~~~-~~ 265 (302)
T 2xn4_A 191 MSTRRSGAGVGVLNNLLYAVGGHDGPL-VRKSVEVYDPTTNAWRQVAD---MNMCRRNAGVCAVNGLLYVVGGDDGS-CN 265 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBSSSS-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS-SB
T ss_pred CccccccccEEEECCEEEEECCCCCCc-ccceEEEEeCCCCCEeeCCC---CCCccccCeEEEECCEEEEECCcCCC-cc
Confidence 789999999999999999999987653 67899999999999999986 88899999999999999999998653 45
Q ss_pred cCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeee
Q 010011 267 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (520)
Q Consensus 267 ~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~ 301 (520)
++++++||+++++|+.+.. ..|.+|..|+++++
T Consensus 266 ~~~v~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~ 298 (302)
T 2xn4_A 266 LASVEYYNPTTDKWTVVSS--CMSTGRSYAGVTVI 298 (302)
T ss_dssp CCCEEEEETTTTEEEECSS--CCSSCCBSCEEEEE
T ss_pred cccEEEEcCCCCeEEECCc--ccCcccccceEEEe
Confidence 7899999999999999862 34778888876554
No 8
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=330.02 Aligned_cols=252 Identities=20% Similarity=0.364 Sum_probs=222.2
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCC-C
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-G 105 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~-~ 105 (520)
..|.+|.+|+++++ +++||++||.. ....+++++||+.+++|..++ ++|.+|..|+++.++++||++||.+ +
T Consensus 41 ~~p~~r~~~~~~~~--~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~ 113 (306)
T 3ii7_A 41 CPFEKRRDAACVFW--DNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVG 113 (306)
T ss_dssp CCSCCCBSCEEEEE--TTEEEEECCBS--SSBCCEEEEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTT
T ss_pred CCCcccceeEEEEE--CCEEEEEeCCC--CCCcceEEEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCC
Confidence 56889999999998 66899999987 446789999999999999975 7899999999999999999999997 5
Q ss_pred CCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCC
Q 010011 106 MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (520)
Q Consensus 106 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~ 185 (520)
...++++++||+.+++|+.++ ++|.+|..|+++.++++|||+||..... ......+++++||+.+++|+.++
T Consensus 114 ~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~yd~~~~~W~~~~--- 185 (306)
T 3ii7_A 114 NSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNN--VSGRVLNSCEVYDPATETWTELC--- 185 (306)
T ss_dssp BSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCT--TTCEECCCEEEEETTTTEEEEEC---
T ss_pred CcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCC--CcccccceEEEeCCCCCeEEECC---
Confidence 668899999999999999986 7999999999999999999999974321 11235899999999999999997
Q ss_pred CCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCC
Q 010011 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN 265 (520)
Q Consensus 186 ~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~ 265 (520)
++|.+|..|+++.++++|||+||.+.. ..++++++||+++++|+.+.. +|.+|.+|+++.++++|||+||.... .
T Consensus 186 ~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~ 260 (306)
T 3ii7_A 186 PMIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMVSP---MPWKGVTVKCAAVGSIVYVLAGFQGV-G 260 (306)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEEEECCC---CSCCBSCCEEEEETTEEEEEECBCSS-S
T ss_pred CccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcEEECCC---CCCCccceeEEEECCEEEEEeCcCCC-e
Confidence 688999999999999999999998765 368899999999999999976 88999999999999999999998653 4
Q ss_pred ccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeee
Q 010011 266 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (520)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~ 301 (520)
..+++++||+++++|+.+..+ |.+|..|+++++
T Consensus 261 ~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~ 293 (306)
T 3ii7_A 261 RLGHILEYNTETDKWVANSKV---RAFPVTSCLICV 293 (306)
T ss_dssp BCCEEEEEETTTTEEEEEEEE---ECCSCTTCEEEE
T ss_pred eeeeEEEEcCCCCeEEeCCCc---ccccceeEEEEE
Confidence 678999999999999999775 667777776554
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=335.80 Aligned_cols=259 Identities=20% Similarity=0.330 Sum_probs=222.3
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcC-----CCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEc
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYG-----KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~-----~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~G 101 (520)
+.|.+|.+|+++++ +++||++||.. ......+++++||+.+++|++++ ++|.+|.+|+++.++++||++|
T Consensus 31 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~G 105 (315)
T 4asc_A 31 SSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVG 105 (315)
T ss_dssp CCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEEC
T ss_pred CCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEe
Confidence 45779999998887 56799999962 22223456999999999999964 7899999999999999999999
Q ss_pred CCC---CCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE
Q 010011 102 GTD---GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (520)
Q Consensus 102 G~~---~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W 178 (520)
|.+ +...++++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||.. .....++++++||+.+++|
T Consensus 106 G~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-----~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 106 GREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIGGKG-----SDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp CEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBC-----TTSCBCCCEEEEETTTTEE
T ss_pred CCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEEEEeCCC-----CCCcccceEEEEeCCCCeE
Confidence 974 3567899999999999999987 7899999999999999999999963 2345689999999999999
Q ss_pred EEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEe
Q 010011 179 KRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFG 258 (520)
Q Consensus 179 ~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~G 258 (520)
+.++ ++|.+|..|+++.++++|||+||.+... .++++++||+++++|+.+.. +|.+|.+|+++.++++|||+|
T Consensus 178 ~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 178 KELA---PMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNKWAPFEA---FPQERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp EECC---CCSSCCBSCEEEEETTEEEEEEEECSSS-EEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEE
T ss_pred EECC---CCCCchhceEEEEECCEEEEEeccCCCC-ccceEEEEECCCCeEEECCC---CCCcccceeEEEECCEEEEEC
Confidence 9997 6789999999999999999999987664 68899999999999999986 899999999999999999999
Q ss_pred cccCC----C----CccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcc
Q 010011 259 GFTDS----Q----NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 259 G~~~~----~----~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (520)
|.... . ..++++|+||+++++|+.+. |.+|..++++++ +++||++..
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-----~~~r~~~~~~~~----~~~l~v~~~ 305 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEEKKWEGVL-----REIAYAAGATFL----PVRLNVLRL 305 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE-----SCSSCCSSCEEE----EEEECGGGS
T ss_pred CccccCcCCccccccccCcEEEecCCCChhhhhc-----cCCcCccceEEe----CCEEEEEEe
Confidence 98531 1 35688999999999999992 556777776554 677887754
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=324.15 Aligned_cols=249 Identities=22% Similarity=0.357 Sum_probs=222.1
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe---EEeeeccCCCCCCCCcceEEEECCEEEEEcCC
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT---WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGT 103 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~---W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~ 103 (520)
..|.+|.+|+++++ +++||++||.... ...+++++||+.+++ |+.+. ++|.+|..|+++.++++||++||.
T Consensus 48 ~~p~~r~~~~~~~~--~~~l~v~GG~~~~-~~~~~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~ 121 (301)
T 2vpj_A 48 SITRKRRYVASVSL--HDRIYVIGGYDGR-SRLSSVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGF 121 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSS-CBCCCEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCB
T ss_pred CCChhhccccEEEE--CCEEEEEcCCCCC-ccCceEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEccc
Confidence 46778999999998 5689999998743 367899999999999 99974 889999999999999999999999
Q ss_pred CCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEccc
Q 010011 104 DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (520)
Q Consensus 104 ~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~ 183 (520)
++...++++++||+.+++|+.++ ++|.+|.+|+++.++++||++||+. .....+++++||+.+++|+.+.
T Consensus 122 ~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~~d~~~~~W~~~~- 191 (301)
T 2vpj_A 122 DGSRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYD------GLNILNSVEKYDPHTGHWTNVT- 191 (301)
T ss_dssp CSSCBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBC------SSCBCCCEEEEETTTTEEEEEC-
T ss_pred CCCcccceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCC------CCcccceEEEEeCCCCcEEeCC-
Confidence 88778899999999999999987 7899999999999999999999964 2236799999999999999996
Q ss_pred CCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCC
Q 010011 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (520)
Q Consensus 184 ~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~ 263 (520)
++|.+|..|+++.++++|||+||.+... ..+++++||+++++|+.+.. +|.+|..|+++.++++|||+||....
T Consensus 192 --~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 192 --PMATKRSGAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIRTDSWTTVTS---MTTPRCYVGATVLRGRLYAIAGYDGN 265 (301)
T ss_dssp --CCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred --CCCcccccceEEEECCEEEEEeCCCCCc-ccceEEEEeCCCCcEEECCC---CCCcccceeEEEECCEEEEEcCcCCC
Confidence 6799999999999999999999987654 58899999999999999976 88999999999999999999998653
Q ss_pred CCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeee
Q 010011 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (520)
Q Consensus 264 ~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~ 301 (520)
..++++++||+++++|+.+..+ |.+|+.|+++++
T Consensus 266 -~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~ 299 (301)
T 2vpj_A 266 -SLLSSIECYDPIIDSWEVVTSM---GTQRCDAGVCVL 299 (301)
T ss_dssp -SBEEEEEEEETTTTEEEEEEEE---EEEEESCEEEEE
T ss_pred -cccccEEEEcCCCCeEEEcCCC---CcccccceEEEe
Confidence 4578999999999999999765 778888876654
No 11
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=4e-39 Score=324.96 Aligned_cols=274 Identities=19% Similarity=0.292 Sum_probs=230.9
Q ss_pred CCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCC--CC
Q 010011 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD--GM 106 (520)
Q Consensus 29 P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~--~~ 106 (520)
..+|.++.. .+.||++||. .+++||+.+++|...+ .+.|.+|..|+++.++++||++||.. ..
T Consensus 6 ~~~r~~~~~-----~~~i~~~GG~--------~~~~yd~~~~~W~~~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 70 (318)
T 2woz_A 6 DIPRHGMFV-----KDLILLVNDT--------AAVAYDPMENECYLTA--LAEQIPRNHSSIVTQQNQVYVVGGLYVDEE 70 (318)
T ss_dssp SSCCCCCSE-----EEEEEEECSS--------EEEEEETTTTEEEEEE--ECTTSCSSEEEEECSSSCEEEEESSCC---
T ss_pred cccccccee-----cchhhhcccc--------ceEEECCCCCceeccc--CCccCCccceEEEEECCEEEEECCcccCcc
Confidence 346766543 2369999993 3799999999999843 24567899999999999999999963 11
Q ss_pred ----CCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc
Q 010011 107 ----NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (520)
Q Consensus 107 ----~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~ 182 (520)
...+++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||... .....++++++||+.+++|+.+.
T Consensus 71 ~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 71 NKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDL----QTEASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp ----CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBT----TTCCEEEEEEEEETTTTEEEEEC
T ss_pred ccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccC----CCCcccceEEEEeCCCCCEeECC
Confidence 12345999999999999886 78999999999999999999999642 23456899999999999999997
Q ss_pred cCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccC
Q 010011 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (520)
Q Consensus 183 ~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 262 (520)
++|.+|..|+++.++++||++||.......++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||...
T Consensus 144 ---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~ 217 (318)
T 2woz_A 144 ---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIHKGKIVIAGGVTE 217 (318)
T ss_dssp ---CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEEET
T ss_pred ---CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC---CCCCcccceEEEECCEEEEEcCcCC
Confidence 6889999999999999999999986666678999999999999999986 8899999999999999999999875
Q ss_pred CCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC--------CCccCceEeeeccccc
Q 010011 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVN 334 (520)
Q Consensus 263 ~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~dv~~l~~~~~~ 334 (520)
. ...+++++||+++++|+.+.+ .|.+|..|+++.+ +++||++||.+.. ...++++|.+++....
T Consensus 218 ~-~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 218 D-GLSASVEAFDLKTNKWEVMTE---FPQERSSISLVSL----AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp T-EEEEEEEEEETTTCCEEECCC---CSSCCBSCEEEEE----TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred C-CccceEEEEECCCCeEEECCC---CCCcccceEEEEE----CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 3 357899999999999999865 4778888776543 7899999998753 2357899999999999
Q ss_pred cccc
Q 010011 335 ERKL 338 (520)
Q Consensus 335 ~~~~ 338 (520)
|..+
T Consensus 290 W~~~ 293 (318)
T 2woz_A 290 WAGM 293 (318)
T ss_dssp EEEE
T ss_pred ehhh
Confidence 8766
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=328.88 Aligned_cols=265 Identities=18% Similarity=0.282 Sum_probs=226.9
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCC----C-C-CCCCcEEEEEC
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD----G-M-NPLRDLHILDT 117 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~----~-~-~~~~~~~~yd~ 117 (520)
+.||++|| +++++||+.+++|... ..+.|.+|.+|+++.++++||++||.. . . ...+++++||+
T Consensus 5 ~~l~~~GG--------~~~~~yd~~~~~W~~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~ 74 (315)
T 4asc_A 5 DLIFMISE--------EGAVAYDPAANECYCA--SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH 74 (315)
T ss_dssp EEEEEEET--------TEEEEEETTTTEEEEE--ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred eEEEEEcC--------CceEEECCCCCeEecC--CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence 46999999 5799999999999973 234477999999999999999999962 1 1 23456999999
Q ss_pred CCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEE
Q 010011 118 SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (520)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~ 197 (520)
.+++|+.++ ++|.+|.+|+++.++++|||+||.... ......+++++||+.+++|+.++ ++|.+|..|+++
T Consensus 75 ~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~ 145 (315)
T 4asc_A 75 LDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIK---DGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVL 145 (315)
T ss_dssp TTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESS---TTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEE
T ss_pred CCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCC---CCCcccceEEEECCCCCcEeECC---CCCCcccceeEE
Confidence 999999886 789999999999999999999996421 23456899999999999999997 689999999999
Q ss_pred eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCC
Q 010011 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 198 ~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
.++++|||+||.......++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||.... ...+++++||+++
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~ 221 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP---MQTARSLFGATVHDGRIIVAAGVTDT-GLTSSAEVYSITD 221 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEEEEECSS-SEEEEEEEEETTT
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC---CCCchhceEEEEECCEEEEEeccCCC-CccceEEEEECCC
Confidence 9999999999996666689999999999999999986 88999999999999999999998654 4678999999999
Q ss_pred CcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC----C----CccCceEeeeccccccccc
Q 010011 278 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS----L----EALDDMYYLYTGLVNERKL 338 (520)
Q Consensus 278 ~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~----~----~~~~dv~~l~~~~~~~~~~ 338 (520)
++|+.+.+ .|.+|..|+++.+ +++||++||.+.. . ..++++|.+++....|..+
T Consensus 222 ~~W~~~~~---~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 222 NKWAPFEA---FPQERSSLSLVSL----VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TEEEEECC---CSSCCBSCEEEEE----TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CeEEECCC---CCCcccceeEEEE----CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 99999965 4778888876554 7899999998642 1 3578999999999888766
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=7.8e-40 Score=330.19 Aligned_cols=258 Identities=21% Similarity=0.344 Sum_probs=220.5
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCC-----CCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEc
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKD-----NCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~-----~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~G 101 (520)
+.|.+|.+|+++++ +++||++||.... ....+++++||+.+++|.+++ ++|.+|..|+++.++++||++|
T Consensus 42 ~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~G 116 (318)
T 2woz_A 42 AEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVA 116 (318)
T ss_dssp CTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEE
T ss_pred CccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEc
Confidence 45678999988776 5679999996321 112345999999999999964 8899999999999999999999
Q ss_pred CCC--CCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE
Q 010011 102 GTD--GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (520)
Q Consensus 102 G~~--~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~ 179 (520)
|.+ +...++++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||.. .....++++++||+.+++|+
T Consensus 117 G~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-----~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 117 GKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGGKT-----DDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp EEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEEECCEE-----SSSCBCCCEEEEETTTTEEE
T ss_pred CccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEEEcCCC-----CCCCccceEEEEcCCCCEEE
Confidence 986 4556789999999999999987 7899999999999999999999963 23346789999999999999
Q ss_pred EcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEec
Q 010011 180 RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGG 259 (520)
Q Consensus 180 ~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG 259 (520)
.++ ++|.+|..|++++++++|||+||.+... ..+++++||+++++|+.+.. +|.+|..|+++.++++|||+||
T Consensus 189 ~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 189 DLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVMTE---FPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp EEC---CCSSCCBSCEEEEETTEEEEEEEEETTE-EEEEEEEEETTTCCEEECCC---CSSCCBSCEEEEETTEEEEECC
T ss_pred ECC---CCCCCcccceEEEECCEEEEEcCcCCCC-ccceEEEEECCCCeEEECCC---CCCcccceEEEEECCEEEEECC
Confidence 997 6889999999999999999999987653 67899999999999999976 8899999999999999999999
Q ss_pred ccCC--------CCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEc
Q 010011 260 FTDS--------QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (520)
Q Consensus 260 ~~~~--------~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (520)
.... ....+++|+||+++++|+.+ .|.+|+.|+++++ +++||++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~----~~~iyi~~ 314 (318)
T 2woz_A 262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEIRYASGASCL----ATRLNLFK 314 (318)
T ss_dssp BCCBC----CCBCCBCCCEEEEETTTTEEEEE-----ESCCGGGTTCEEE----EEEEEGGG
T ss_pred eeccCCCCceeccceeeeEEEEeCCCCEehhh-----cccccccccceee----CCEEEEEE
Confidence 8642 13478999999999999999 3677888876654 67788763
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=9.8e-38 Score=347.30 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=229.8
Q ss_pred CCCCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeee-c--cCCCCCCCCcceEEEE--CCEEEEEc
Q 010011 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-I--KGSPPTPRDSHSCTTV--GENLYVFG 101 (520)
Q Consensus 27 ~~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~-~--~g~~P~~R~~hs~~~~--~~~iyv~G 101 (520)
..|.+|++|+++ + +++||++||.+. ...+++++||+.+++|..+. . .+.+|.+|.+|+++.+ +++|||+|
T Consensus 384 ~~p~rr~g~~~~-~--~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~G 458 (695)
T 2zwa_A 384 CPINRKFGDVDV-A--GNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIG 458 (695)
T ss_dssp CTTCCBSCEEEE-C--SSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEEC
T ss_pred CCCCCceeEEEE-E--CCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEc
Confidence 456678777655 4 567999999876 46789999999999999987 2 3568999999999999 99999999
Q ss_pred CCCCCC-CCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE
Q 010011 102 GTDGMN-PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (520)
Q Consensus 102 G~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~ 179 (520)
|.++.. .++++|+||+.+++|+.+. ++|.+|++|+++++ +++||||||.... . ++++||+.+++|+
T Consensus 459 G~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~------~---~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 459 GRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEG------P---AMLLYNVTEEIFK 526 (695)
T ss_dssp CBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSS------C---SEEEEETTTTEEE
T ss_pred CCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCC------C---CEEEEECCCCceE
Confidence 997754 7899999999999999986 89999999999997 9999999997422 1 8999999999999
Q ss_pred EcccCCCCCCCCcceeEEeeC---CEEEEEecCCCCC-cccCceEEEECCCCc------EEEeeCCCCCCCCCceeEEEE
Q 010011 180 RATTSGNPPSARDSHTCSSWK---NKIIVIGGEDGHD-YYLSDVHILDTDTLT------WKELNTSGMVLSPRAGHSTVA 249 (520)
Q Consensus 180 ~v~~~~~~p~~r~~h~~~~~~---~~lyv~GG~~~~~-~~~~~i~~yd~~t~~------W~~~~~~~~~p~~R~~hs~~~ 249 (520)
.+...+.+|.+|..|++++++ ++|||+||....+ ..++++++||+.+++ |+.+.. .++.+|.+|+++.
T Consensus 527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKY 604 (695)
T ss_dssp ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEE
T ss_pred EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEE
Confidence 999877799999999988876 8999999986543 578999999999999 898876 1358999999999
Q ss_pred EC-CEEEEEecccCCC--CccCcEEEEecCCCcEEEeeeCCC----CCCCceeeeeeeeccccCCEEEEEcccC---CCC
Q 010011 250 FG-KNLFVFGGFTDSQ--NLYDDLYMIDVDSGLWTKVITTGE----GPSARFSVAGDCLDPLKGGVLVFIGGCN---KSL 319 (520)
Q Consensus 250 ~~-~~iyv~GG~~~~~--~~~~dv~~yd~~~~~W~~l~~~~~----~p~~r~~~~~~~~~~~~~~~l~v~GG~~---~~~ 319 (520)
++ ++|||+||..... ...+++++||+++++|+.+..... .+..+.+|+++. ..+++|||+||.. ..+
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~---~~~g~i~v~GGg~~cfsfG 681 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS---TSMGTIHIIGGGATCYGFG 681 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEEC---C---CEEEECCEEECTTSC
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEE---eCCCEEEEEeCCccCcCcc
Confidence 99 9999999986543 367999999999999996532211 112344565443 3455899999954 234
Q ss_pred CccCceEeeecc
Q 010011 320 EALDDMYYLYTG 331 (520)
Q Consensus 320 ~~~~dv~~l~~~ 331 (520)
..++++|.|++.
T Consensus 682 t~~n~i~~ldl~ 693 (695)
T 2zwa_A 682 SVTNVGLKLIAI 693 (695)
T ss_dssp EEECCCEEEEEC
T ss_pred ccccceEEEEEE
Confidence 566799999865
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=6.2e-36 Score=306.22 Aligned_cols=244 Identities=20% Similarity=0.272 Sum_probs=197.2
Q ss_pred CCC-CCccceEEEEEcCCCEEEEEcCc-C---CCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEc
Q 010011 27 SGP-GKRWGHTCNAIKGGRFLYVFGGY-G---KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (520)
Q Consensus 27 ~~P-~~R~ghs~~~v~~g~~Iyi~GG~-~---~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~G 101 (520)
+.| .+|.+|+++++ +++|||+||. . ......+++++||+.+++|++++..+ |.+|.+|+++.++++||++|
T Consensus 50 ~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~G 125 (357)
T 2uvk_A 50 AFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTG 125 (357)
T ss_dssp CCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEE
T ss_pred CCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEe
Confidence 356 78999999999 6689999998 2 12335789999999999999976322 58999999999999999999
Q ss_pred CCCCC----------------------------------CCCCcEEEEECCCCeEEeecccCCCCCCCC-CceEEEECCE
Q 010011 102 GTDGM----------------------------------NPLRDLHILDTSSHTWISPSVRGEGPEARE-GHSAALVGKR 146 (520)
Q Consensus 102 G~~~~----------------------------------~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~-~hs~~~~~~~ 146 (520)
|.+.. ..++++++||+.+++|+.+. ++|.+|. +|+++.++++
T Consensus 126 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~ 202 (357)
T 2uvk_A 126 GVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDK 202 (357)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTE
T ss_pred CcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCE
Confidence 98653 25689999999999999986 6777654 5999999999
Q ss_pred EEEEeCCCCCCCCCCcceeceeEEEEc--CcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCC------------
Q 010011 147 LFIFGGCGKSSNTNDEVYYNDLYILNT--ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH------------ 212 (520)
Q Consensus 147 lyv~GG~~~~~~~~~~~~~~~v~~~d~--~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~------------ 212 (520)
||||||... .....+++++||+ .+.+|+.+... +.|..|..|+++.++++|||+||.+..
T Consensus 203 iyv~GG~~~-----~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~ 276 (357)
T 2uvk_A 203 TWLINGEAK-----PGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNY 276 (357)
T ss_dssp EEEECCEEE-----TTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSS
T ss_pred EEEEeeecC-----CCcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCccccccccee
Confidence 999999632 2245788999987 89999999744 345557788899999999999996432
Q ss_pred ----CcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeC
Q 010011 213 ----DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 213 ----~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
...++++++||+++++|+.+.. +|.+|..|+++.++++|||+||.+.....++++++|++++++|..+.+.
T Consensus 277 ~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 277 AHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp TTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred ccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 1234689999999999999986 8899999999999999999999987666789999999999999988654
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.9e-31 Score=296.74 Aligned_cols=240 Identities=15% Similarity=0.229 Sum_probs=204.0
Q ss_pred CCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeec-c--cCCCCCCCCCceEEEE--CCEEEEEeCC
Q 010011 79 GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPS-V--RGEGPEAREGHSAALV--GKRLFIFGGC 153 (520)
Q Consensus 79 g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~-~--~g~~p~~r~~hs~~~~--~~~lyv~GG~ 153 (520)
+..|..|.+|+++ ++++||++||.++ ..++++++||+.+++|+.++ . .+.+|.+|.+|+++.+ +++||||||+
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~ 460 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGR 460 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCB
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCC
Confidence 3566667665544 8999999999987 78899999999999999887 2 3568999999999999 9999999997
Q ss_pred CCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 010011 154 GKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 154 ~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
.. ....++++|+||+.+++|+.+. ++|.+|..|+++++ +++|||+||.+... ++++||+.+++|+.+
T Consensus 461 ~~-----~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 461 KA-----PHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDV 528 (695)
T ss_dssp SS-----TTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEEC
T ss_pred CC-----CCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEc
Confidence 42 2236789999999999999997 78999999999996 99999999987654 899999999999999
Q ss_pred eCCCCCCCCCceeEEEEEC---CEEEEEecccCCC-CccCcEEEEecCCCc------EEEeeeCCCCCCCceeeeeeeec
Q 010011 233 NTSGMVLSPRAGHSTVAFG---KNLFVFGGFTDSQ-NLYDDLYMIDVDSGL------WTKVITTGEGPSARFSVAGDCLD 302 (520)
Q Consensus 233 ~~~~~~p~~R~~hs~~~~~---~~iyv~GG~~~~~-~~~~dv~~yd~~~~~------W~~l~~~~~~p~~r~~~~~~~~~ 302 (520)
...+.+|.+|.+|+++.++ ++|||+||...+. ..++++|+||+++++ |+.+..+ ++.+|+.|+++.+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~- 605 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYI- 605 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEE-
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEe-
Confidence 9877789999999988776 8999999997554 678999999999999 8988774 2577888876654
Q ss_pred cccCCEEEEEcccCCCC--CccCceEeeecccccccc
Q 010011 303 PLKGGVLVFIGGCNKSL--EALDDMYYLYTGLVNERK 337 (520)
Q Consensus 303 ~~~~~~l~v~GG~~~~~--~~~~dv~~l~~~~~~~~~ 337 (520)
.+++|||+||++... ...++++.|++....|..
T Consensus 606 --~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 606 --TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS 640 (695)
T ss_dssp --ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred --CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence 238999999987654 368999999999999873
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=7e-31 Score=290.76 Aligned_cols=268 Identities=17% Similarity=0.160 Sum_probs=205.7
Q ss_pred CCCCccceEEEEEcCCCEEEEEcCcCCCC-----CCcCeEEEEECCCCeEEeeeccCCCCCCCCcce--EEE-ECCEEEE
Q 010011 28 GPGKRWGHTCNAIKGGRFLYVFGGYGKDN-----CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHS--CTT-VGENLYV 99 (520)
Q Consensus 28 ~P~~R~ghs~~~v~~g~~Iyi~GG~~~~~-----~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs--~~~-~~~~iyv 99 (520)
+|.||.+|+++++..+++||++||..... ...+.+++||+.+++|+.+. .+|.+|..|+ ++. .+++||+
T Consensus 182 ~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv 258 (656)
T 1k3i_A 182 IDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVV 258 (656)
T ss_dssp EECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEE
T ss_pred ccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc---ccCCCCCCccccccCCCCCCEEE
Confidence 35677888888776456899999985432 12357999999999999976 5666676654 333 5899999
Q ss_pred EcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE
Q 010011 100 FGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (520)
Q Consensus 100 ~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W 178 (520)
+||.+.. ++++||+.+++|+++. ++|.+|.+|+++.+ +++|||+||... .....+++++||+.+++|
T Consensus 259 ~GG~~~~----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~-----~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 259 TGGNDAK----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWS-----GGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp ECSSSTT----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCC-----SSSCCCCEEEEETTTTEE
T ss_pred eCCCCCC----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCccc-----CCcccccceEeCCCCCcc
Confidence 9997653 7999999999999886 79999999999999 999999999522 223578899999999999
Q ss_pred EEcccCC--CCCC---------------------------------------------------------CCcceeEEe-
Q 010011 179 KRATTSG--NPPS---------------------------------------------------------ARDSHTCSS- 198 (520)
Q Consensus 179 ~~v~~~~--~~p~---------------------------------------------------------~r~~h~~~~- 198 (520)
+.++..+ +++. ++..++++.
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence 9973211 1111 122344443
Q ss_pred --eCCEEEEEecCCC--CCcccC---ceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCC-----CC
Q 010011 199 --WKNKIIVIGGEDG--HDYYLS---DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDS-----QN 265 (520)
Q Consensus 199 --~~~~lyv~GG~~~--~~~~~~---~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~-----~~ 265 (520)
.+++||++||... ....++ .+++||+.+++|..+. .+.+|.+|..|+++.+ +++|||+||.... ..
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 4899999999743 122344 7889999999999987 2348999999998888 9999999997632 34
Q ss_pred ccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccC
Q 010011 266 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (520)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (520)
..+++++||+++++|+.+..+ |.+|..|+++++ ..+++||++||..
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~---~~~R~~hs~a~l--l~dg~v~v~GG~~ 531 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPN---SIVRVYHSISLL--LPDGRVFNGGGGL 531 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCC---SSCCCTTEEEEE--CTTSCEEEEECCC
T ss_pred cccceEEEcCCCCceeecCCC---CCccccccHhhc--CCCcEEEecCCCC
Confidence 578899999999999987654 788988886655 4588999999953
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.94 E-value=2e-26 Score=255.10 Aligned_cols=254 Identities=11% Similarity=0.120 Sum_probs=191.0
Q ss_pred EEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCC------CCCcEEEEECCCCeEEeecccCCCCC
Q 010011 62 VHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMN------PLRDLHILDTSSHTWISPSVRGEGPE 133 (520)
Q Consensus 62 ~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~------~~~~~~~yd~~t~~W~~~~~~g~~p~ 133 (520)
+..||+.+++|..+. ++ ||..++++.+ +++||++||.+... ..+++++||+.+++|+.+. .+|.
T Consensus 168 ~~~~dp~~~~W~~~~---~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~---~~~~ 239 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTI---DL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTVT 239 (656)
T ss_dssp CCCCCTTSCEEEEEE---EC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE---EEEC
T ss_pred cccCCCCCCeeeeec---cC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc---ccCC
Confidence 445677899999865 33 4566777777 99999999986532 2357999999999999876 4666
Q ss_pred CCCCce--EE-EECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEEecC
Q 010011 134 AREGHS--AA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGE 209 (520)
Q Consensus 134 ~r~~hs--~~-~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~ 209 (520)
+|..|+ ++ ..+++||++||+.. .++++||+.+++|.++. ++|.+|..|+++.+ +++|||+||.
T Consensus 240 ~~~~~~~~~~~~~~g~lyv~GG~~~----------~~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~ 306 (656)
T 1k3i_A 240 KHDMFCPGISMDGNGQIVVTGGNDA----------KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGS 306 (656)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSST----------TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCC
T ss_pred CCCCccccccCCCCCCEEEeCCCCC----------CceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCc
Confidence 666553 34 35899999999631 27999999999999997 78999999999998 9999999996
Q ss_pred CCCCcccCceEEEECCCCcEEEeeCCCC--CCC-----------------------------------------------
Q 010011 210 DGHDYYLSDVHILDTDTLTWKELNTSGM--VLS----------------------------------------------- 240 (520)
Q Consensus 210 ~~~~~~~~~i~~yd~~t~~W~~~~~~~~--~p~----------------------------------------------- 240 (520)
......++++++||+++++|+.+...+. ++.
T Consensus 307 ~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~ 386 (656)
T 1k3i_A 307 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG 386 (656)
T ss_dssp CCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred ccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC
Confidence 4444478899999999999999732110 111
Q ss_pred ----------CCceeEEEE---ECCEEEEEecccC--CCCccC---cEEEEecCCCcEEEeeeCCCCCCCceeeeeeeec
Q 010011 241 ----------PRAGHSTVA---FGKNLFVFGGFTD--SQNLYD---DLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 302 (520)
Q Consensus 241 ----------~R~~hs~~~---~~~~iyv~GG~~~--~~~~~~---dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~ 302 (520)
++..++++. .+++|||+||... ....++ ++++||+++++|..+. .+..|.+|..|+++++
T Consensus 387 ~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l- 464 (656)
T 1k3i_A 387 KRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVL- 464 (656)
T ss_dssp ECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEEC-
T ss_pred ccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEEC-
Confidence 122344553 4899999999753 223344 7899999999999986 2345788988876553
Q ss_pred cccCCEEEEEcccCCC-----CCccCceEeeeccccccccccc
Q 010011 303 PLKGGVLVFIGGCNKS-----LEALDDMYYLYTGLVNERKLEK 340 (520)
Q Consensus 303 ~~~~~~l~v~GG~~~~-----~~~~~dv~~l~~~~~~~~~~~~ 340 (520)
.+++|||+||.+.. ...+++++++|....+|..+..
T Consensus 465 --~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 465 --PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp --TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred --CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 48899999997632 2457899999998888876544
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.96 E-value=0.0022 Score=61.02 Aligned_cols=202 Identities=16% Similarity=0.113 Sum_probs=126.7
Q ss_pred CCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcce
Q 010011 85 RDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY 164 (520)
Q Consensus 85 R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~ 164 (520)
-+-++....++.||+-.|..+. +.+.++|+.+++-.... +++...++.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~----------- 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR----------- 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----------
T ss_pred cccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee-----------
Confidence 4445777889999999987543 46899999998875533 456666778889999999998763
Q ss_pred eceeEEEEcCcceEEE-cccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCC-C
Q 010011 165 YNDLYILNTETFVWKR-ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP-R 242 (520)
Q Consensus 165 ~~~v~~~d~~t~~W~~-v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~-R 242 (520)
.+.+++||+++.+-.. ++. +..+.+++..++.||+.-| .+.++.+|+++.+-..--..+..+.+ +
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~------~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRY------PGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLD 150 (243)
T ss_dssp SSEEEEEETTTTEEEEEEEC------SSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred CCEEEEEECCcCcEEEEEeC------CCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence 4779999998866443 331 2245677766788888754 24699999999775432221111222 2
Q ss_pred ceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCC-CC------Cc-eeeeeeeeccccCCEEEEEcc
Q 010011 243 AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG-PS------AR-FSVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 243 ~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~-p~------~r-~~~~~~~~~~~~~~~l~v~GG 314 (520)
.-.-+...+++||+-- + ..++|.+.|+++++-...-.+... |. +. ...-+..++ ..+++|||.|-
T Consensus 151 ~lNeLe~~~G~lyanv-w-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d-~~~~~lfVTGK 223 (243)
T 3mbr_X 151 NLNELEWVNGELLANV-W-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD-AEHDRLFVTGK 223 (243)
T ss_dssp CEEEEEEETTEEEEEE-T-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE-TTTTEEEEEET
T ss_pred cceeeEEeCCEEEEEE-C-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc-CCCCEEEEECC
Confidence 2223445688888543 2 135799999999875544332211 11 11 122222222 45778888873
Q ss_pred cCCCCCccCceEeee
Q 010011 315 CNKSLEALDDMYYLY 329 (520)
Q Consensus 315 ~~~~~~~~~dv~~l~ 329 (520)
.-..+|.+.
T Consensus 224 ------~wp~~~~v~ 232 (243)
T 3mbr_X 224 ------RWPMLYEIR 232 (243)
T ss_dssp ------TCSEEEEEE
T ss_pred ------CCCcEEEEE
Confidence 334455544
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.85 E-value=0.0059 Score=60.45 Aligned_cols=250 Identities=11% Similarity=0.009 Sum_probs=136.9
Q ss_pred CCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEe-eeccCCCCCCCCcceEEE-ECCEEEEEcCCCCC
Q 010011 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGM 106 (520)
Q Consensus 29 P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~ 106 (520)
+.....+..+.. ++++|+.... .+.+.++|+.+.+-.. ++ .. ..-+.++. -++++|+....
T Consensus 41 ~lg~~~~~i~~~--~~~lyv~~~~------~~~v~viD~~t~~~~~~i~---~~---~~p~~i~~~~~g~lyv~~~~--- 103 (328)
T 3dsm_A 41 KLGDVAQSMVIR--DGIGWIVVNN------SHVIFAIDINTFKEVGRIT---GF---TSPRYIHFLSDEKAYVTQIW--- 103 (328)
T ss_dssp CCBSCEEEEEEE--TTEEEEEEGG------GTEEEEEETTTCCEEEEEE---CC---SSEEEEEEEETTEEEEEEBS---
T ss_pred ccCccceEEEEE--CCEEEEEEcC------CCEEEEEECcccEEEEEcC---CC---CCCcEEEEeCCCeEEEEECC---
Confidence 333444555443 6689987642 2579999999887643 32 11 22234444 67899998642
Q ss_pred CCCCcEEEEECCCCeEEe-ecccCCCC-CCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccC
Q 010011 107 NPLRDLHILDTSSHTWIS-PSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS 184 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~-~~~~g~~p-~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~ 184 (520)
.+.+.++|+.+.+-.. ++. +... ....-+.++..++++|+..- ...+.+.++|+.+.+....-..
T Consensus 104 --~~~v~~iD~~t~~~~~~i~~-g~~~~~~~~p~~i~~~~~~lyv~~~----------~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 104 --DYRIFIINPKTYEITGYIEC-PDMDMESGSTEQMVQYGKYVYVNCW----------SYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp --CSEEEEEETTTTEEEEEEEC-TTCCTTTCBCCCEEEETTEEEEEEC----------TTCCEEEEEETTTTEEEEEEEC
T ss_pred --CCeEEEEECCCCeEEEEEEc-CCccccCCCcceEEEECCEEEEEcC----------CCCCEEEEEECCCCeEEEEEEc
Confidence 3679999999987653 221 2200 00122345557889999852 0135789999998775543222
Q ss_pred CCCCCCCcceeEE-eeCCEEEEEecCCCCCcc----cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEE
Q 010011 185 GNPPSARDSHTCS-SWKNKIIVIGGEDGHDYY----LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVF 257 (520)
Q Consensus 185 ~~~p~~r~~h~~~-~~~~~lyv~GG~~~~~~~----~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~ 257 (520)
+..| +.++ .-++++|+.......... .+.++++|+++.+....-. .+....-..++.. ++.+|+.
T Consensus 171 g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---~~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 171 GIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---FKLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp SSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---CCTTCCCEEEEECTTSCEEEEE
T ss_pred CCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---cCCCCCceeEEEecCCCEEEEE
Confidence 2222 2222 236888877533211111 3679999999988664322 2222222334444 5678886
Q ss_pred ecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecc
Q 010011 258 GGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (520)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (520)
.+ .++++|+++.+...... .+.......+.++. ..++.||+....+. ...+.+++++..
T Consensus 243 ~~---------~v~~~d~~t~~~~~~~~---~~~~~~~p~gi~vd-p~~g~lyva~~~~y--~~~~~V~v~d~~ 301 (328)
T 3dsm_A 243 NN---------DIWRMPVEADRVPVRPF---LEFRDTKYYGLTVN-PNNGEVYVADAIDY--QQQGIVYRYSPQ 301 (328)
T ss_dssp SS---------SEEEEETTCSSCCSSCS---BCCCSSCEEEEEEC-TTTCCEEEEECTTS--SSEEEEEEECTT
T ss_pred cc---------EEEEEECCCCceeeeee---ecCCCCceEEEEEc-CCCCeEEEEccccc--ccCCEEEEECCC
Confidence 54 59999998876531111 11101111222332 34778888752211 123457777655
No 21
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.78 E-value=0.0062 Score=57.89 Aligned_cols=182 Identities=13% Similarity=0.029 Sum_probs=116.2
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
++.+|.-.|.... +.+.++|+.+++-..-. .+|....+.+++..+++||+.... .+.+++||+.+.+-
T Consensus 30 ~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 30 RGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYDLATLTP 97 (243)
T ss_dssp TTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTTEE
T ss_pred CCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEECCcCcE
Confidence 4689988885432 56899999998766522 455556778889999999998653 36799999998775
Q ss_pred EeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE-EcccCCCCCCCC-cceeEEeeC
Q 010011 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSAR-DSHTCSSWK 200 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~-~v~~~~~~p~~r-~~h~~~~~~ 200 (520)
..- .+.+..+.+++..+++||+.-| .+.++.+|+++.+-. .+... ..+.+. .--.+...+
T Consensus 98 ~~t-----i~~~~~Gwglt~dg~~L~vSdg------------s~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~~ 159 (243)
T 3mbr_X 98 RAR-----FRYPGEGWALTSDDSHLYMSDG------------TAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWVN 159 (243)
T ss_dssp EEE-----EECSSCCCEEEECSSCEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEET
T ss_pred EEE-----EeCCCCceEEeeCCCEEEEECC------------CCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEeC
Confidence 431 1222357788877888999766 467999999986543 33322 122221 112344558
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCC-CCCC--------CCCceeEEEEE--CCEEEEEecc
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMVL--------SPRAGHSTVAF--GKNLFVFGGF 260 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~-~~~p--------~~R~~hs~~~~--~~~iyv~GG~ 260 (520)
++||+--- ..++|.+.|+++.+-...-.. +..+ ..-.-...+.. ++++||.|-.
T Consensus 160 G~lyanvw------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 160 GELLANVW------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TEEEEEET------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEC------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 88886432 246799999999875543221 1111 11122334444 4788888854
No 22
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.78 E-value=0.018 Score=56.82 Aligned_cols=230 Identities=11% Similarity=0.067 Sum_probs=132.4
Q ss_pred cCeEEEEECCCCeEEeeecc--CCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEE-eecccCCCCCCC
Q 010011 59 TNQVHVFDTVNQTWSQPVIK--GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAR 135 (520)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~--g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r 135 (520)
.+.+..||+.++++..--.. ...+.....+.++..++++|+.... .+.+.++|+.+.+-. .++ ...
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~---~~~--- 84 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRIT---GFT--- 84 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEE---CCS---
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcC---CCC---
Confidence 36799999999988752100 1223344456677789999998742 357999999988763 332 112
Q ss_pred CCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE-cccCCCCC-CCCcceeEEeeCCEEEEEecCCCC
Q 010011 136 EGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGNPP-SARDSHTCSSWKNKIIVIGGEDGH 212 (520)
Q Consensus 136 ~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~-v~~~~~~p-~~r~~h~~~~~~~~lyv~GG~~~~ 212 (520)
..+.++. .++++|+.... .+.+.++|+.+.+... +.. +... ....-+.++..++++|+..-.
T Consensus 85 ~p~~i~~~~~g~lyv~~~~-----------~~~v~~iD~~t~~~~~~i~~-g~~~~~~~~p~~i~~~~~~lyv~~~~--- 149 (328)
T 3dsm_A 85 SPRYIHFLSDEKAYVTQIW-----------DYRIFIINPKTYEITGYIEC-PDMDMESGSTEQMVQYGKYVYVNCWS--- 149 (328)
T ss_dssp SEEEEEEEETTEEEEEEBS-----------CSEEEEEETTTTEEEEEEEC-TTCCTTTCBCCCEEEETTEEEEEECT---
T ss_pred CCcEEEEeCCCeEEEEECC-----------CCeEEEEECCCCeEEEEEEc-CCccccCCCcceEEEECCEEEEEcCC---
Confidence 2233444 67899998642 3678999999877543 321 1200 000223444578999998521
Q ss_pred CcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCc----cCcEEEEecCCCcEEEeeeCCC
Q 010011 213 DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL----YDDLYMIDVDSGLWTKVITTGE 288 (520)
Q Consensus 213 ~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~----~~dv~~yd~~~~~W~~l~~~~~ 288 (520)
..+.+.++|+++.+....-..+.. |. ..++.-++++|+.......... .+.++++|+++.+.......+.
T Consensus 150 --~~~~v~viD~~t~~~~~~i~~g~~--p~--~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~ 223 (328)
T 3dsm_A 150 --YQNRILKIDTETDKVVDELTIGIQ--PT--SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL 223 (328)
T ss_dssp --TCCEEEEEETTTTEEEEEEECSSC--BC--CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred --CCCEEEEEECCCCeEEEEEEcCCC--cc--ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence 135699999999876654332211 21 1222335788776543211111 2679999999987664333321
Q ss_pred CCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccc
Q 010011 289 GPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 334 (520)
Q Consensus 289 ~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~ 334 (520)
...++ ..++. ..++.||+..+ .++.+++....
T Consensus 224 g~~p~----~la~~-~d~~~lyv~~~---------~v~~~d~~t~~ 255 (328)
T 3dsm_A 224 GDWPS----EVQLN-GTRDTLYWINN---------DIWRMPVEADR 255 (328)
T ss_dssp TCCCE----EEEEC-TTSCEEEEESS---------SEEEEETTCSS
T ss_pred CCCce----eEEEe-cCCCEEEEEcc---------EEEEEECCCCc
Confidence 11121 12222 34678888643 68888865443
No 23
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.59 E-value=0.0058 Score=58.64 Aligned_cols=190 Identities=13% Similarity=0.043 Sum_probs=116.8
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceece
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYND 167 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 167 (520)
.+....++.||+-.|..+. +.+.++|+.+.+-.... +++...++.+++..+++||+.... .+.
T Consensus 46 qGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~-----------~~~ 108 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK-----------NGL 108 (262)
T ss_dssp EEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----------SSE
T ss_pred ceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee-----------CCE
Confidence 5556668899999886543 36889999998865433 345555667788889999998663 467
Q ss_pred eEEEEcCcceEE-EcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCC-Ccee
Q 010011 168 LYILNTETFVWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP-RAGH 245 (520)
Q Consensus 168 v~~~d~~t~~W~-~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~-R~~h 245 (520)
+++||+++.+-. .++. +-.+.+++..++.||+.-| .+.++.+|+++.+-..--..+....+ +.--
T Consensus 109 v~v~D~~t~~~~~ti~~------~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNY------DGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEEETTTCCEEEEEEC------SSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEECccCcEEEEEEC------CCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 999999876543 3332 2245666666777888654 24699999998764433221111111 1111
Q ss_pred EEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCC-CC------CceeeeeeeeccccCCEEEEEcc
Q 010011 246 STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG-PS------ARFSVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 246 s~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~-p~------~r~~~~~~~~~~~~~~~l~v~GG 314 (520)
-+...+++||+-- + ..++|.+.|+++++-...-+.... |. .-...-+.++. ...+.|||.|-
T Consensus 176 ELe~~~G~lyan~-w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d-p~~~~lfVTGK 244 (262)
T 3nol_A 176 ELEWVDGEIFANV-W-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD-KEHHRLFVTGK 244 (262)
T ss_dssp EEEEETTEEEEEE-T-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE-TTTTEEEEEET
T ss_pred eeEEECCEEEEEE-c-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc-CCCCEEEEECC
Confidence 2344588888532 2 246799999999976554443211 11 11122333333 45678888873
No 24
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.50 E-value=0.084 Score=51.45 Aligned_cols=245 Identities=8% Similarity=-0.002 Sum_probs=124.2
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcE
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~ 112 (520)
+..+..++++.||+....+........++++|+.+.+....-..+. .-++++.. ++.+|+.++.+ +.+
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~~-----~~v 113 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-----KPFGATINNTTQTLWFGNTVN-----SAV 113 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-----CCCSEEEETTTTEEEEEETTT-----TEE
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-----CcceEEECCCCCEEEEEecCC-----CEE
Confidence 3445556778888766432221124679999998876544221111 12233333 34688876542 479
Q ss_pred EEEECCCCeEEe-ecccCCCCC-----CCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEccc-
Q 010011 113 HILDTSSHTWIS-PSVRGEGPE-----AREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT- 183 (520)
Q Consensus 113 ~~yd~~t~~W~~-~~~~g~~p~-----~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~- 183 (520)
+++|+.+.+-.. ++. +.... +..-+.++.. ++.+|+.+... ...++++|+.+.+-...-.
T Consensus 114 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~~~ 182 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVL-DDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAIQN 182 (353)
T ss_dssp EEEETTTCCEEEEEES-CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEECC
T ss_pred EEEeCCCCeeEEEEec-CCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEecC
Confidence 999998876432 221 11111 1111233333 35677776210 2458999998766443321
Q ss_pred CCCCCCCCcceeEEe--eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEec
Q 010011 184 SGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGG 259 (520)
Q Consensus 184 ~~~~p~~r~~h~~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG 259 (520)
.+..| +.++. -++.+|+... .+.+.+||+.+.+-......+..........++.. ++.+|+...
T Consensus 183 ~~~~~-----~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 183 TGKMS-----TGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp CCTTC-----CCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCCcc-----ceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 11111 22222 2455666533 24688999988765433321111111112223333 455766553
Q ss_pred ccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccc
Q 010011 260 FTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 332 (520)
Q Consensus 260 ~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~ 332 (520)
. .+.+++||+++.+.......+. +. ...+ ...++.+|+.+..+ +.++.+++..
T Consensus 251 ~------~~~v~~~d~~~~~~~~~~~~~~---~~----~~~~-s~dg~~l~v~~~~~------~~v~~~d~~~ 303 (353)
T 3vgz_A 251 K------AAEVLVVDTRNGNILAKVAAPE---SL----AVLF-NPARNEAYVTHRQA------GKVSVIDAKS 303 (353)
T ss_dssp S------SSEEEEEETTTCCEEEEEECSS---CC----CEEE-ETTTTEEEEEETTT------TEEEEEETTT
T ss_pred C------CCEEEEEECCCCcEEEEEEcCC---Cc----eEEE-CCCCCEEEEEECCC------CeEEEEECCC
Confidence 2 2459999998887655444322 11 1122 13456677765432 2466666543
No 25
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.42 E-value=0.011 Score=56.92 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=102.5
Q ss_pred cceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceec
Q 010011 87 SHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYN 166 (520)
Q Consensus 87 ~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~ 166 (520)
..+....++.||+..|..+. +.++|+.+.+-.... ++...++.+++..+++||+.... .+
T Consensus 57 tqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~-----------~~ 116 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT-----------EG 116 (268)
T ss_dssp EEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS-----------SC
T ss_pred cceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc-----------CC
Confidence 35667779999999987543 889999987653211 33344566788889999998663 46
Q ss_pred eeEEEEcCcceEE-EcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCC-ce
Q 010011 167 DLYILNTETFVWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AG 244 (520)
Q Consensus 167 ~v~~~d~~t~~W~-~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R-~~ 244 (520)
.+++||+++.+-. .++. +-.+.+++..++.||+.-| .+.++.+|+++.+-..--..+..+.+. .-
T Consensus 117 ~v~V~D~~Tl~~~~ti~~------~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRY------SGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELI 183 (268)
T ss_dssp EEEEEETTTTEEEEEEEC------SSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEECCcCcEEEEEeC------CCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence 7999999886544 3332 2235667777888999865 246999999997654322211111111 11
Q ss_pred eEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 245 hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
.-+...+++||+-- + ..++|.+.|+++++-...
T Consensus 184 NeLe~~dG~lyanv-w-----~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 184 NELECANGVIYANI-W-----HSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp EEEEEETTEEEEEE-T-----TCSEEEEECTTTCBEEEE
T ss_pred cccEEeCCEEEEEE-C-----CCCeEEEEeCCCCcEEEE
Confidence 22345588888522 2 246799999999865443
No 26
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.42 E-value=0.0083 Score=57.57 Aligned_cols=181 Identities=11% Similarity=0.035 Sum_probs=112.5
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
++.||+-.|... .+.+.++|+.+++-..-. .++....+.+++..+++||+.... .+.+++||+.+.+-
T Consensus 52 ~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 52 NGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK-----NGLGFVWNIRNLRQ 119 (262)
T ss_dssp TTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTCCE
T ss_pred CCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee-----CCEEEEEECccCcE
Confidence 457998887532 256899999998765522 344444667788899999999653 36799999998775
Q ss_pred Ee-ecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE-EEcccCCCCCCCCcc-eeEEee
Q 010011 123 IS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSARDS-HTCSSW 199 (520)
Q Consensus 123 ~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W-~~v~~~~~~p~~r~~-h~~~~~ 199 (520)
.. ++ .+-.+.+++..++.||+.-| .+.++.+|+++.+- ..+... ..+.+... -.+...
T Consensus 120 ~~ti~------~~~eG~glt~dg~~L~~SdG------------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 120 VRSFN------YDGEGWGLTHNDQYLIMSDG------------TPVLRFLDPESLTPVRTITVT-AHGEELPELNELEWV 180 (262)
T ss_dssp EEEEE------CSSCCCCEEECSSCEEECCS------------SSEEEEECTTTCSEEEEEECE-ETTEECCCEEEEEEE
T ss_pred EEEEE------CCCCceEEecCCCEEEEECC------------CCeEEEEcCCCCeEEEEEEec-cCCccccccceeEEE
Confidence 42 32 22366777777888999655 46799999998653 333321 11111111 123445
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCC-CCCC-------CCCceeEEEEE--CCEEEEEecc
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMVL-------SPRAGHSTVAF--GKNLFVFGGF 260 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~-~~~p-------~~R~~hs~~~~--~~~iyv~GG~ 260 (520)
+++||+--- ..+.|.+.|+++.+-...-.. +..+ ..-.-...+.. ++++||.|-.
T Consensus 181 ~G~lyan~w------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 DGEIFANVW------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTEEEEEET------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEc------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 888886421 346799999999886544332 1111 11122444444 4688888854
No 27
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.33 E-value=0.13 Score=49.94 Aligned_cols=207 Identities=12% Similarity=0.063 Sum_probs=107.5
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEe-eeccCCCCC-----CCCcceEEEE--CCEEEEEcCCCCC
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPT-----PRDSHSCTTV--GENLYVFGGTDGM 106 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~-----~R~~hs~~~~--~~~iyv~GG~~~~ 106 (520)
+..+..++++++|+.++.+ +.+++||+.+++-.. +.. +.... +..-++++.. ++.+|+.+...
T Consensus 92 ~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-- 162 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVL-DDRKRTEEVRPLQPRELVADDATNTVYISGIGK-- 162 (353)
T ss_dssp CSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEES-CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--
T ss_pred ceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEec-CCCccccccCCCCCceEEECCCCCEEEEEecCC--
Confidence 4455666777788776532 468999998876433 321 11111 1111233332 45688776211
Q ss_pred CCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccC
Q 010011 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS 184 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~ 184 (520)
...++++|+.+.+-...-. . ....-+.++.. ++.+|+... .+.++++|+.+.+-......
T Consensus 163 --~~~i~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~~~~------------~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 163 --ESVIWVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYTTNA------------DGELITIDTADNKILSRKKL 224 (353)
T ss_dssp --SCEEEEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEEECT------------TSEEEEEETTTTEEEEEEEC
T ss_pred --CceEEEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEEEcC------------CCeEEEEECCCCeEEEEEEc
Confidence 2469999998876543221 0 11112223332 345666533 24678899987654433211
Q ss_pred CCCCCCCcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEeccc
Q 010011 185 GNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFT 261 (520)
Q Consensus 185 ~~~p~~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~ 261 (520)
+..........++.. ++.+|+.... .+.+++||+.+.+....-.. +.+ ...+..- ++.+|+.+...
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~---~~~--~~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSK------AAEVLVVDTRNGNILAKVAA---PES--LAVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESS------SSEEEEEETTTCCEEEEEEC---SSC--CCEEEETTTTEEEEEETTT
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEc---CCC--ceEEECCCCCEEEEEECCC
Confidence 111111122223332 4567666432 25699999988776544331 222 1222222 34577765432
Q ss_pred CCCCccCcEEEEecCCCcEEEeee
Q 010011 262 DSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
+.+.+||+.+.+......
T Consensus 294 ------~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 294 ------GKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp ------TEEEEEETTTTEEEEEEE
T ss_pred ------CeEEEEECCCCeEEEEEe
Confidence 459999998887655433
No 28
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.25 E-value=0.029 Score=55.90 Aligned_cols=198 Identities=19% Similarity=0.214 Sum_probs=105.5
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcE
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~ 112 (520)
++....++++.||+.|+.+ ..+.++|..+++....-..+ ..-.+++.. +..||+.|..+ ..+
T Consensus 35 ~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~~-----~~v 98 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS-----STL 98 (391)
T ss_dssp EEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT-----TEE
T ss_pred ceEEECCCCCEEEEECCCC------CeEEEEECCCCeEEEEEECC-----CCccceEECCCCCEEEEEECCC-----CEE
Confidence 3444446677787776532 46899999888765532111 122222222 44577766432 469
Q ss_pred EEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCC
Q 010011 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (520)
Q Consensus 113 ~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~ 190 (520)
++||+.+++....-..+ ..-.+++.. ++.+|+.++. ...++++|+.+.+....-..+..
T Consensus 99 ~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~--- 159 (391)
T 1l0q_A 99 SVIDTTSNTVAGTVKTG-----KSPLGLALSPDGKKLYVTNNG-----------DKTVSVINTVTKAVINTVSVGRS--- 159 (391)
T ss_dssp EEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECCSS---
T ss_pred EEEECCCCeEEEEEeCC-----CCcceEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEEEecCCC---
Confidence 99999988764432111 112233333 2357777662 24688999988766544322111
Q ss_pred CcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCcc
Q 010011 191 RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLY 267 (520)
Q Consensus 191 r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~ 267 (520)
...++.. ++.+|+.++.+ +.+.+||+.+.+...... ....-.+++.. +++.+++++... ..
T Consensus 160 --~~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~---~~ 223 (391)
T 1l0q_A 160 --PKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVDK---YF 223 (391)
T ss_dssp --EEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEECS---SC
T ss_pred --cceEEECCCCCEEEEEeCCC------CEEEEEECCCCeEEEEEe-----cCCCccceEECCCCCEEEEEecCc---CC
Confidence 1223222 34666766543 358999998876554432 11111222222 344444443211 12
Q ss_pred CcEEEEecCCCcEEEe
Q 010011 268 DDLYMIDVDSGLWTKV 283 (520)
Q Consensus 268 ~dv~~yd~~~~~W~~l 283 (520)
..+.+||+.+..-...
T Consensus 224 ~~v~~~d~~~~~~~~~ 239 (391)
T 1l0q_A 224 NTVSMIDTGTNKITAR 239 (391)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred CcEEEEECCCCeEEEE
Confidence 4599999988754433
No 29
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.24 E-value=0.1 Score=50.19 Aligned_cols=201 Identities=14% Similarity=0.013 Sum_probs=119.2
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEE
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~ 114 (520)
|......+ +.+|+..|... .+.+.++|+.+++-..-- +++....+.+++..+++||+..- ..+.+++
T Consensus 24 ~Gl~~~~d-g~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~-----~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAEN-DTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVW-----LKNIGFI 90 (266)
T ss_dssp EEEEECST-TEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEET-----TCSEEEE
T ss_pred ccEEEeCC-CeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEe-----cCCEEEE
Confidence 44444333 58999876321 256999999998765522 23333455678888999999864 2467999
Q ss_pred EECCCCeEEe-ecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE-EEcccCCCCCCCC-
Q 010011 115 LDTSSHTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSAR- 191 (520)
Q Consensus 115 yd~~t~~W~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W-~~v~~~~~~p~~r- 191 (520)
||+.+.+-.. ++. + . -.+.+.+..++++|+.-| .+.++.+|+++.+- ..+... ..+.+.
T Consensus 91 iD~~t~~v~~~i~~-g-~---~~g~glt~Dg~~l~vs~g------------s~~l~viD~~t~~v~~~I~Vg-~~~~p~~ 152 (266)
T 2iwa_A 91 YDRRTLSNIKNFTH-Q-M---KDGWGLATDGKILYGSDG------------TSILYEIDPHTFKLIKKHNVK-YNGHRVI 152 (266)
T ss_dssp EETTTTEEEEEEEC-C-S---SSCCEEEECSSSEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECC
T ss_pred EECCCCcEEEEEEC-C-C---CCeEEEEECCCEEEEECC------------CCeEEEEECCCCcEEEEEEEC-CCCcccc
Confidence 9999876432 221 1 1 234556666788998755 46799999988653 333322 111111
Q ss_pred cceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCC-CCC--------CCCCceeEEEEE--CCEEEEEecc
Q 010011 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMV--------LSPRAGHSTVAF--GKNLFVFGGF 260 (520)
Q Consensus 192 ~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~-~~~--------p~~R~~hs~~~~--~~~iyv~GG~ 260 (520)
.-..+...++.+|+--. ..+++.+.|+++++-...-.. +.. +..-.-...+.. ++++||.|+.
T Consensus 153 ~~nele~~dg~lyvn~~------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 153 RLNELEYINGEVWANIW------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp CEEEEEEETTEEEEEET------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEEECCEEEEecC------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 11233344788887532 246799999998875433221 100 111122344444 4689999876
Q ss_pred cCCCCccCcEEEEecCCC
Q 010011 261 TDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 261 ~~~~~~~~dv~~yd~~~~ 278 (520)
. +.+++.++...
T Consensus 227 ~------~~v~~i~l~~~ 238 (266)
T 2iwa_A 227 W------PKLFEIKLHLV 238 (266)
T ss_dssp C------SEEEEEEEEEC
T ss_pred C------CeEEEEEEecc
Confidence 4 44777776553
No 30
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.21 E-value=0.018 Score=55.32 Aligned_cols=150 Identities=13% Similarity=-0.027 Sum_probs=98.1
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
++.||+-.|.. ..+.++|+.+++-..-. ++....+.+++..+++||+.... .+.+++||+.+.+-
T Consensus 64 ~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 64 QGHFFESTGHQ------GTLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWSGMPPQR 128 (268)
T ss_dssp TTEEEEEETTT------TEEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEETTTTEE
T ss_pred CCEEEEEcCCC------CEEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEECCcCcE
Confidence 56788887753 23889999988654411 33344566788889999998653 36799999998775
Q ss_pred Ee-ecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE-EcccCCCCCCCCcc-eeEEee
Q 010011 123 IS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSARDS-HTCSSW 199 (520)
Q Consensus 123 ~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~-~v~~~~~~p~~r~~-h~~~~~ 199 (520)
.. ++ .+-.+.+++..+++||+.-| .+.++.+|+++.+-. .+... ..+.+... -.+...
T Consensus 129 ~~ti~------~~~eGwGLt~Dg~~L~vSdG------------s~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 129 ERTTR------YSGEGWGLCYWNGKLVRSDG------------GTMLTFHEPDGFALVGAVQVK-LRGQPVELINELECA 189 (268)
T ss_dssp EEEEE------CSSCCCCEEEETTEEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE
T ss_pred EEEEe------CCCceeEEecCCCEEEEECC------------CCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEEe
Confidence 43 22 22346778888899999876 467999999986543 33321 11222111 123445
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
+++||+--- ..++|.+.|+++.+-...
T Consensus 190 dG~lyanvw------~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 190 NGVIYANIW------HSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp TTEEEEEET------TCSEEEEECTTTCBEEEE
T ss_pred CCEEEEEEC------CCCeEEEEeCCCCcEEEE
Confidence 888886321 246799999999875443
No 31
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.18 E-value=0.12 Score=49.75 Aligned_cols=203 Identities=11% Similarity=-0.016 Sum_probs=118.6
Q ss_pred ceEEEEC-CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceec
Q 010011 88 HSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYN 166 (520)
Q Consensus 88 hs~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~ 166 (520)
++++..+ +.||+..|..+ .+.+.++|+.+++-...- +++...++.+++..+++||+..-. .+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~-----------~~ 86 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWL-----------KN 86 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETT-----------CS
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEec-----------CC
Confidence 6666665 79999877422 357999999998865432 234444566778889999998652 46
Q ss_pred eeEEEEcCcceEE-EcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCC-ce
Q 010011 167 DLYILNTETFVWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AG 244 (520)
Q Consensus 167 ~v~~~d~~t~~W~-~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R-~~ 244 (520)
.+++||+.+.+-. .++. + .| .+.+++.-++.+|+.-| .+.++.+|+++.+-..--..+..+.+. .-
T Consensus 87 ~v~viD~~t~~v~~~i~~-g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTH-Q-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp EEEEEETTTTEEEEEEEC-C-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEECCCCcEEEEEEC-C-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 7999999876433 3331 1 12 23445555677888753 357999999987644332211111111 11
Q ss_pred eEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCC-CC-------CCCceeeeeeeeccccCCEEEEEcccC
Q 010011 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTG-EG-------PSARFSVAGDCLDPLKGGVLVFIGGCN 316 (520)
Q Consensus 245 hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~-~~-------p~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (520)
..+...++++|+--.. .++|.+.|+++++-...-+.+ .. ........+..+ ...++++||.|+..
T Consensus 155 nele~~dg~lyvn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~-~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 155 NELEYINGEVWANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW-DQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEEETTEEEEEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE-ETTTTEEEEEETTC
T ss_pred eeEEEECCEEEEecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEE-cCCCCEEEEECCCC
Confidence 2333447888865422 357999999998644333221 00 000011122222 24567899988754
Q ss_pred CCCCccCceEeeeccc
Q 010011 317 KSLEALDDMYYLYTGL 332 (520)
Q Consensus 317 ~~~~~~~dv~~l~~~~ 332 (520)
. .++.+++..
T Consensus 228 ~------~v~~i~l~~ 237 (266)
T 2iwa_A 228 P------KLFEIKLHL 237 (266)
T ss_dssp S------EEEEEEEEE
T ss_pred C------eEEEEEEec
Confidence 3 467666544
No 32
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.07 E-value=0.14 Score=52.19 Aligned_cols=212 Identities=15% Similarity=0.135 Sum_probs=104.8
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCce
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (520)
..+.+||..+.+-...- .+ ....-.+...++..++.|+.+ ..+.+||+.+.+-...- ........
T Consensus 219 g~i~~wd~~~~~~~~~~-~~----~~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~-----~~~~~~v~ 283 (445)
T 2ovr_B 219 ATLRVWDIETGQCLHVL-MG----HVAAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLHTL-----QGHTNRVY 283 (445)
T ss_dssp SEEEEEESSSCCEEEEE-EC----CSSCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEEEE-----CCCSSCEE
T ss_pred CEEEEEECCCCcEEEEE-cC----CcccEEEEEECCCEEEEEcCC-----CEEEEEECCCCcEeEEe-----cCCCCceE
Confidence 34666776655433211 11 111222333456666666543 35788888776543211 11111223
Q ss_pred EEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCce
Q 010011 140 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 219 (520)
Q Consensus 140 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i 219 (520)
+...++..++.|+. ...+.+||+.+.+-...-. .......+...++.+++.|+.++ .+
T Consensus 284 ~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg------~i 341 (445)
T 2ovr_B 284 SLQFDGIHVVSGSL-----------DTSIRVWDVETGNCIHTLT-----GHQSLTSGMELKDNILVSGNADS------TV 341 (445)
T ss_dssp EEEECSSEEEEEET-----------TSCEEEEETTTCCEEEEEC-----CCCSCEEEEEEETTEEEEEETTS------CE
T ss_pred EEEECCCEEEEEeC-----------CCeEEEEECCCCCEEEEEc-----CCcccEEEEEEeCCEEEEEeCCC------eE
Confidence 33346666677763 2457888887665332211 01111223334555667776543 48
Q ss_pred EEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeee
Q 010011 220 HILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD 299 (520)
Q Consensus 220 ~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~ 299 (520)
..||+.+.+-...-.. .........++..++.+++.|+.+ ..+.+||+.+.+..................+.
T Consensus 342 ~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 342 KIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp EEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred EEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCEEEEEeCC------CeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 8899877653322210 111222234455567777777754 34899999988755432111111111112222
Q ss_pred eeccccCCEEEEEcccCCC
Q 010011 300 CLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 300 ~~~~~~~~~l~v~GG~~~~ 318 (520)
.+ ..++.+++.|+.++.
T Consensus 414 ~~--s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 414 RA--SNTKLVCAVGSRNGT 430 (445)
T ss_dssp EE--CSSEEEEEEECSSSS
T ss_pred Ee--cCCEEEEEEcccCCC
Confidence 22 356778888887764
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.042 Score=53.99 Aligned_cols=192 Identities=10% Similarity=0.025 Sum_probs=95.9
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--C--CEEEEEcCCCCCCCCCcEEEEE
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G--ENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~~iyv~GG~~~~~~~~~~~~yd 116 (520)
++++ +++.|+.+ ..+.+||....++..+... ......-.+..+ + +.+++.|+.+ ..+.+||
T Consensus 21 ~~~~-~l~~~~~d------g~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd 85 (379)
T 3jrp_A 21 YYGK-RLATCSSD------KTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWK 85 (379)
T ss_dssp SSSS-EEEEEETT------SCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEE
T ss_pred CCCC-EEEEEECC------CcEEEEecCCCcceeeeEe---cCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEE
Confidence 3444 55666543 3478888877776654321 111112222333 2 5677777654 3588899
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEEE--C--CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE-EEcccCCCCCCCC
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAALV--G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSAR 191 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W-~~v~~~~~~p~~r 191 (520)
+.+.+|..+..... ......++.. + +.+++.|+. ...+.+||+.+... ...... . ...
T Consensus 86 ~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~-~--~~~ 148 (379)
T 3jrp_A 86 EENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASS-----------DGKVSVVEFKENGTTSPIIID-A--HAI 148 (379)
T ss_dssp EETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEET-----------TSEEEEEECCTTSCCCEEEEE-C--CTT
T ss_pred cCCCceeEeeeecC---CCcceEEEEeCCCCCCCEEEEecC-----------CCcEEEEecCCCCceeeEEec-C--CCC
Confidence 99998866543211 1112222222 2 456777763 24567777765421 111100 0 011
Q ss_pred cceeEEee--------------CCEEEEEecCCCCCcccCceEEEECCCC--cEEEeeCCCCCCCCCce-eEEEEE-C--
Q 010011 192 DSHTCSSW--------------KNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAG-HSTVAF-G-- 251 (520)
Q Consensus 192 ~~h~~~~~--------------~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~~~~~~~~p~~R~~-hs~~~~-~-- 251 (520)
.-.++... ++.+++.|+.++ .+..||+.+. .|..+.. ....... .+++.. +
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~---~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEE---ECCCSSCEEEEEECCCCS
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEE---EecccCcEeEEEECCCCC
Confidence 11122222 367788887654 3777776543 3554432 1111111 222222 3
Q ss_pred -CEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 252 -KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 252 -~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
+.+++.|+.+. .+.+||+.+..
T Consensus 220 ~~~~l~s~~~dg------~i~iwd~~~~~ 242 (379)
T 3jrp_A 220 LRSYLASVSQDR------TCIIWTQDNEQ 242 (379)
T ss_dssp SSEEEEEEETTS------CEEEEEESSTT
T ss_pred CCCeEEEEeCCC------EEEEEeCCCCC
Confidence 57888887643 38888888763
No 34
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.92 E-value=0.046 Score=54.43 Aligned_cols=187 Identities=16% Similarity=0.251 Sum_probs=103.0
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
+++|+.|+.+ +.+.++|..+++-...-... ..-.+++.. +..||+.|+.+ ..+.++|+.+.+
T Consensus 2 ~~l~vs~~~d------~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~ 65 (391)
T 1l0q_A 2 TFAYIANSES------DNISVIDVTSNKVTATIPVG-----SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNN 65 (391)
T ss_dssp EEEEEEETTT------TEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTE
T ss_pred CEEEEEcCCC------CEEEEEECCCCeEEEEeecC-----CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCe
Confidence 3577777643 46899999988755422111 111233332 34677777543 469999998887
Q ss_pred EEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee
Q 010011 122 WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (520)
Q Consensus 122 W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~ 199 (520)
....-.. +. .-.+++.. ++.||+.|.. ...++++|+.+.+....... ......++..
T Consensus 66 ~~~~~~~---~~--~v~~~~~spdg~~l~~~~~~-----------~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s 124 (391)
T 1l0q_A 66 VIATVPA---GS--SPQGVAVSPDGKQVYVTNMA-----------SSTLSVIDTTSNTVAGTVKT-----GKSPLGLALS 124 (391)
T ss_dssp EEEEEEC---SS--SEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEEC-----SSSEEEEEEC
T ss_pred EEEEEEC---CC--CccceEECCCCCEEEEEECC-----------CCEEEEEECCCCeEEEEEeC-----CCCcceEEEC
Confidence 6543211 11 12233333 3456666552 24688999988765444321 1112233332
Q ss_pred --CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEEec
Q 010011 200 --KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 200 --~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
++.+|+.++.+ +.+.+||+.+.+....-..+ ..-..++.. ++.+|+.++.. +.+++||+
T Consensus 125 ~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~------~~v~~~d~ 187 (391)
T 1l0q_A 125 PDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS------MSISVIDT 187 (391)
T ss_dssp TTSSEEEEEETTT------TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT------TEEEEEET
T ss_pred CCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC------CEEEEEEC
Confidence 34576776543 35899999888766543321 111233333 34566666542 34999999
Q ss_pred CCCcEEEee
Q 010011 276 DSGLWTKVI 284 (520)
Q Consensus 276 ~~~~W~~l~ 284 (520)
.+.......
T Consensus 188 ~~~~~~~~~ 196 (391)
T 1l0q_A 188 VTNSVIDTV 196 (391)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 988655443
No 35
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.91 E-value=0.39 Score=47.68 Aligned_cols=174 Identities=20% Similarity=0.244 Sum_probs=98.1
Q ss_pred CeEEEEECCCCe--EEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccCCCCCC-
Q 010011 60 NQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPEA- 134 (520)
Q Consensus 60 ~~~~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~- 134 (520)
..++.||..+++ |+... ..+....+...+.+..++.||+ |.. ...++.||+.+.+ |+... ..|..
T Consensus 153 g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~v~~-g~~-----~g~l~~~d~~tG~~~w~~~~---~~~~~~ 222 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNL-DMPSLSLRGESAPTTAFGAAVV-GGD-----NGRVSAVLMEQGQMIWQQRI---SQATGS 222 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC-CC-----CCCCCCEEETTEEEE-CCT-----TTEEEEEETTTCCEEEEEEC---CC----
T ss_pred CeEEEEECCCCcEEEEEeC-CCCceeecCCCCcEEECCEEEE-EcC-----CCEEEEEECCCCcEEEEEec---ccCCCC
Confidence 358889987764 87632 1111111223444555777776 322 2368999988754 76532 11111
Q ss_pred ----C---CCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEEE
Q 010011 135 ----R---EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (520)
Q Consensus 135 ----r---~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~lyv 205 (520)
+ .....+..++.+|+.+. ...++++|+.+. .|+.-.. ...+.+..++.+|+
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~------------~g~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l~~ 282 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAY------------NGNLTALDLRSGQIMWKRELG--------SVNDFIVDGNRIYL 282 (376)
T ss_dssp -------CCCCCCEEETTEEEEECT------------TSCEEEEETTTCCEEEEECCC--------CEEEEEEETTEEEE
T ss_pred cccccccccCCCcEEECCEEEEEec------------CcEEEEEECCCCcEEeeccCC--------CCCCceEECCEEEE
Confidence 0 12333456788887642 235789998765 5765421 12345556888888
Q ss_pred EecCCCCCcccCceEEEECCCCc--EEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc--EE
Q 010011 206 IGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WT 281 (520)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~ 281 (520)
... ...+++||+++.+ |+.-. ...+...+.+..++.||+... ...+++||+++++ |+
T Consensus 283 ~~~-------~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~l~v~~~-------~g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 283 VDQ-------NDRVMALTIDGGVTLWTQSD-----LLHRLLTSPVLYNGNLVVGDS-------EGYLHWINVEDGRFVAQ 343 (376)
T ss_dssp EET-------TCCEEEEETTTCCEEEEECT-----TTTSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEEEE
T ss_pred EcC-------CCeEEEEECCCCcEEEeecc-----cCCCcccCCEEECCEEEEEeC-------CCeEEEEECCCCcEEEE
Confidence 753 2358999998765 66431 112223344556888887542 1349999999886 54
Q ss_pred E
Q 010011 282 K 282 (520)
Q Consensus 282 ~ 282 (520)
.
T Consensus 344 ~ 344 (376)
T 3q7m_A 344 Q 344 (376)
T ss_dssp E
T ss_pred E
Confidence 3
No 36
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.84 E-value=0.042 Score=61.13 Aligned_cols=214 Identities=9% Similarity=0.052 Sum_probs=116.0
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC-c
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG-H 138 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-h 138 (520)
.+++||+.+++++.+... .++ ...-.+++.. ++.|++-.. ..+++||+.+.+|+.............. .
T Consensus 428 Gl~~~~~~~~~~~~~~~~-~~~-~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELE-KNE-LLDVRVFYEDKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVR 498 (781)
T ss_dssp EEEEECSSSCEEEECCST-TTC-CCCEEEEEECTTSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEE
T ss_pred CEEEEcCCCCcEEEeccC-CCC-CCeEEEEEECCCCCEEEEEC-------CceEEEeCCCCeEEecccCcccccccceeE
Confidence 467788877877775421 111 1112222222 467777431 4699999999888665421111111111 1
Q ss_pred eEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCccc
Q 010011 139 SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYL 216 (520)
Q Consensus 139 s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~ 216 (520)
+++.. ++.|++-.- ...+++||+.+.+++.......++.... .++.. .++.|++-..
T Consensus 499 ~i~~d~~g~lWigt~------------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-------- 557 (781)
T 3v9f_A 499 SIAQDSEGRFWIGTF------------GGGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-------- 557 (781)
T ss_dssp EEEECTTCCEEEEES------------SSCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET--------
T ss_pred EEEEcCCCCEEEEEc------------CCCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC--------
Confidence 22222 356776421 1348899999999888764323332222 22222 2566776432
Q ss_pred Cce-EEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCce
Q 010011 217 SDV-HILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARF 294 (520)
Q Consensus 217 ~~i-~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~ 294 (520)
+.+ .+||+++.+++.......++.... .+++.. ++.|++.+. +.+.+||+++.++.......-.+...+
T Consensus 558 ~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~--------~Gl~~~~~~~~~~~~~~~~dGl~~~~f 628 (781)
T 3v9f_A 558 EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN--------TGISCYITSKKCFYTYDHSNNIPQGSF 628 (781)
T ss_dssp TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS--------SCEEEEETTTTEEEEECGGGTCCSSCE
T ss_pred CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC--------CceEEEECCCCceEEecccCCcccccc
Confidence 236 889999988887754322333332 233332 466776542 238999999999888765444455555
Q ss_pred eeeeeeeccccCCEEEEEcccC
Q 010011 295 SVAGDCLDPLKGGVLVFIGGCN 316 (520)
Q Consensus 295 ~~~~~~~~~~~~~~l~v~GG~~ 316 (520)
...+.+. ..++.|++ ||.+
T Consensus 629 ~~~~~~~--~~~G~l~~-g~~~ 647 (781)
T 3v9f_A 629 ISGCVTK--DHNGLIYF-GSIN 647 (781)
T ss_dssp EEEEEEE--CTTSCEEE-EETT
T ss_pred ccCceEE--CCCCEEEE-ECCC
Confidence 4444443 34566554 5543
No 37
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.67 E-value=0.1 Score=58.17 Aligned_cols=212 Identities=13% Similarity=0.089 Sum_probs=112.3
Q ss_pred eEEEEECCCCeEEeeeccCC-CCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCC--C
Q 010011 61 QVHVFDTVNQTWSQPVIKGS-PPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAR--E 136 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~-~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r--~ 136 (520)
.+++||+.++++..+....+ ++. ..-.+++.. ++.|++-.. +.+++||+.+.+|+...... .+... .
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~-~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~-~~~~~~~~ 498 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVN-ENVYAILPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEK-DGTPVVSK 498 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSC-SCEEEEEECSSSCEEEEES-------SCEEEEETTTTEEEECCBCT-TCCBCCCC
T ss_pred ceeEEeCCCCcEEEeecCCCCcCC-CeeEEEEECCCCCEEEEec-------CceeEEeCCCCeEEEccccc-cccccCCc
Confidence 47778888877776542111 111 111222222 456776431 35999999999998765321 01111 1
Q ss_pred C-ceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEccc---CCCCCCCCcceeEEe-eCCEEEEEecCC
Q 010011 137 G-HSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT---SGNPPSARDSHTCSS-WKNKIIVIGGED 210 (520)
Q Consensus 137 ~-hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~---~~~~p~~r~~h~~~~-~~~~lyv~GG~~ 210 (520)
. .+.... ++.|++-.. ..+++||+.+.++ .... ...++.. .-.+++. .++.|++-..
T Consensus 499 ~i~~i~~d~~g~lWigt~-------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT~-- 561 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGE-------------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGTR-- 561 (795)
T ss_dssp CEEEEEECTTCCEEEEES-------------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEES--
T ss_pred eEEEEEECCCCCEEEEeC-------------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEeC--
Confidence 1 122222 356777432 3488999988887 4431 1111111 1122222 2567776432
Q ss_pred CCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCC
Q 010011 211 GHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG 289 (520)
Q Consensus 211 ~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~ 289 (520)
+.+++||+++.+++.......++.... .+++.- ++.|++.+. +.+.+||+++.++.......-.
T Consensus 562 ------~Gl~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~~~dGl 626 (795)
T 4a2l_A 562 ------EGFYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN--------RGISCFNPETEKFRNFTESDGL 626 (795)
T ss_dssp ------SCEEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET--------TEEEEEETTTTEEEEECGGGTC
T ss_pred ------CCceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC--------CceEEEcCCCCcEEEcCCcCCC
Confidence 248899999999988754322333222 233332 456777552 2389999999998877654444
Q ss_pred CCCceeeeeeeeccccCCEEEEEcccC
Q 010011 290 PSARFSVAGDCLDPLKGGVLVFIGGCN 316 (520)
Q Consensus 290 p~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (520)
+...+...+.+. ..++.|++ ||.+
T Consensus 627 ~~~~f~~~~~~~--~~~G~l~~-g~~~ 650 (795)
T 4a2l_A 627 QSNQFNTASYCR--TSVGQMYF-GGIN 650 (795)
T ss_dssp SCSCEEEEEEEE--CTTSCEEE-EETT
T ss_pred ccccCccCceeE--CCCCeEEE-ecCC
Confidence 555554333343 34566554 5543
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.59 E-value=0.26 Score=48.19 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=73.2
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
++++ +++.|+.+ ..+.+||..+.+|..+...... ...-.+++.. ++++++.|+.+ ..+.+||+.+
T Consensus 18 ~~~~-~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~ 83 (372)
T 1k8k_C 18 KDRT-QIAICPNN------HEVHIYEKSGNKWVQVHELKEH--NGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKG 83 (372)
T ss_dssp TTSS-EEEEECSS------SEEEEEEEETTEEEEEEEEECC--SSCEEEEEEETTTTEEEEEETT-----SCEEEEEEET
T ss_pred CCCC-EEEEEeCC------CEEEEEeCCCCcEEeeeeecCC--CCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCC
Confidence 4454 55666642 4688999999876654321111 1111222222 45666677654 3588899988
Q ss_pred CeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce-EEEcccCCCCCCCCcceeEE
Q 010011 120 HTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATTSGNPPSARDSHTCS 197 (520)
Q Consensus 120 ~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~-W~~v~~~~~~p~~r~~h~~~ 197 (520)
.++........ ....-.++... ++.+++.|+.+ ..+.++|+.+.. |...... ..+....-.++.
T Consensus 84 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----------~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~ 149 (372)
T 1k8k_C 84 RTWKPTLVILR--INRAARCVRWAPNEKKFAVGSGS-----------RVISICYFEQENDWWVCKHI-KKPIRSTVLSLD 149 (372)
T ss_dssp TEEEEEEECCC--CSSCEEEEEECTTSSEEEEEETT-----------SSEEEEEEETTTTEEEEEEE-CTTCCSCEEEEE
T ss_pred CeeeeeEEeec--CCCceeEEEECCCCCEEEEEeCC-----------CEEEEEEecCCCcceeeeee-ecccCCCeeEEE
Confidence 88765432111 11111122222 45666666631 335566655432 2222111 011111112222
Q ss_pred ee-CCEEEEEecCCCCCcccCceEEEECC
Q 010011 198 SW-KNKIIVIGGEDGHDYYLSDVHILDTD 225 (520)
Q Consensus 198 ~~-~~~lyv~GG~~~~~~~~~~i~~yd~~ 225 (520)
.. ++.+++.|+.++ .+..||+.
T Consensus 150 ~~~~~~~l~~~~~dg------~i~~~d~~ 172 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDF------KCRIFSAY 172 (372)
T ss_dssp ECTTSSEEEEEETTS------CEEEEECC
T ss_pred EcCCCCEEEEEcCCC------CEEEEEcc
Confidence 22 566777777543 47788854
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.58 E-value=0.3 Score=46.82 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=107.7
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
++++ .++.|+.+ ..+.+||..+.+...... .........+..+ +++.++.|+.+ ..+.+||+.
T Consensus 107 ~~~~-~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~ 171 (337)
T 1gxr_A 107 PDGC-TLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLH 171 (337)
T ss_dssp TTSS-EEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETT
T ss_pred CCCC-EEEEEcCC------CcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCC
Confidence 3444 45555532 468899998877543221 1111111122222 45566666654 358999998
Q ss_pred CCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEE
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~ 197 (520)
+.+....- ..... .-.+++.. ++..++.|+. ...+.+||+.+.+-..... .+. .-.++.
T Consensus 172 ~~~~~~~~---~~~~~-~i~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~---~~~--~v~~~~ 231 (337)
T 1gxr_A 172 NQTLVRQF---QGHTD-GASCIDISNDGTKLWTGGL-----------DNTVRSWDLREGRQLQQHD---FTS--QIFSLG 231 (337)
T ss_dssp TTEEEEEE---CCCSS-CEEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEE---CSS--CEEEEE
T ss_pred CCceeeee---ecccC-ceEEEEECCCCCEEEEEec-----------CCcEEEEECCCCceEeeec---CCC--ceEEEE
Confidence 87654321 11111 11122222 4556666663 2457888987765433221 111 112222
Q ss_pred e-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEec
Q 010011 198 S-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 198 ~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
. .++.+++.|+.+ ..+..||..+..-..+.. ....-.++... ++++++.|+.+ ..+.+||+
T Consensus 232 ~s~~~~~l~~~~~~------~~i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~~~ 294 (337)
T 1gxr_A 232 YCPTGEWLAVGMES------SNVEVLHVNKPDKYQLHL-----HESCVLSLKFAYCGKWFVSTGKD------NLLNAWRT 294 (337)
T ss_dssp ECTTSSEEEEEETT------SCEEEEETTSSCEEEECC-----CSSCEEEEEECTTSSEEEEEETT------SEEEEEET
T ss_pred ECCCCCEEEEEcCC------CcEEEEECCCCCeEEEcC-----CccceeEEEECCCCCEEEEecCC------CcEEEEEC
Confidence 2 256677777654 348889988766443322 11111222222 45667777653 34899999
Q ss_pred CCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 276 DSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 276 ~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
++..-...... . .......+ ..++.+++.|+.+..
T Consensus 295 ~~~~~~~~~~~---~---~~v~~~~~--s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 295 PYGASIFQSKE---S---SSVLSCDI--SVDDKYIVTGSGDKK 329 (337)
T ss_dssp TTCCEEEEEEC---S---SCEEEEEE--CTTSCEEEEEETTSC
T ss_pred CCCeEEEEecC---C---CcEEEEEE--CCCCCEEEEecCCCe
Confidence 88765533221 1 11122222 345666777775543
No 40
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.54 E-value=0.48 Score=51.83 Aligned_cols=209 Identities=17% Similarity=0.228 Sum_probs=109.0
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCCC--------CCCcceEEEECCEEEEEcCCCCCCCCCcE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPT--------PRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~--------~R~~hs~~~~~~~iyv~GG~~~~~~~~~~ 112 (520)
++.||+... .+.++.+|..++ .|+.-. ..+. .....+.+..+++||+... -..+
T Consensus 77 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l 140 (677)
T 1kb0_A 77 DGIMYVSAS-------WSVVHAIDTRTGNRIWTYDP---QIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRL 140 (677)
T ss_dssp TTEEEEECG-------GGCEEEEETTTTEEEEEECC---CCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CCEEEEECC-------CCeEEEEECCCCcEEEEEcC---CCCccccccccccCCCCCceEECCEEEEEcC------CCEE
Confidence 567887654 256899999876 488632 1110 0122345667889998642 2469
Q ss_pred EEEECCCCe--EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCC
Q 010011 113 HILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPP 188 (520)
Q Consensus 113 ~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p 188 (520)
+.+|..|.+ |+...............+.++.++.+|+-.+.. +......++.||..+. .|+.-.......
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~------~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~ 214 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA------EYGVRGYITAYDAETGERKWRWFSVPGDPS 214 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCT------TTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccc------ccCCCCEEEEEECCCCcEEEEeccCCCCcc
Confidence 999998765 875321000000112223445678887754311 1112467899999875 487654221110
Q ss_pred CCC-----------------c----c-----eeEEe--eCCEEEEEecCC------------CCCcccCceEEEECCCCc
Q 010011 189 SAR-----------------D----S-----HTCSS--WKNKIIVIGGED------------GHDYYLSDVHILDTDTLT 228 (520)
Q Consensus 189 ~~r-----------------~----~-----h~~~~--~~~~lyv~GG~~------------~~~~~~~~i~~yd~~t~~ 228 (520)
.+. . . ..+++ .++.+|+-.|.. +.+.+...++.+|++|.+
T Consensus 215 ~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~ 294 (677)
T 1kb0_A 215 KPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK 294 (677)
T ss_dssp SCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred ccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC
Confidence 000 0 0 11222 256677654432 334456679999998765
Q ss_pred --EEEeeCCCCCCCCCceeE--EE--EECC---EEEEEecccCCCCccCcEEEEecCCCc
Q 010011 229 --WKELNTSGMVLSPRAGHS--TV--AFGK---NLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 229 --W~~~~~~~~~p~~R~~hs--~~--~~~~---~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
|..-......-.-+...+ .+ ..++ .+++++..+ ..++++|.++++
T Consensus 295 ~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~------G~l~~lD~~tG~ 348 (677)
T 1kb0_A 295 YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKN------GFFFVLDRTNGK 348 (677)
T ss_dssp EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTT------SEEEEEETTTCC
T ss_pred EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCC------CEEEEEECCCCC
Confidence 765432111100011111 11 1244 566666543 348888888774
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.53 E-value=0.6 Score=44.67 Aligned_cols=229 Identities=14% Similarity=0.161 Sum_probs=109.7
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~ 114 (520)
++.+..++..++.|+.+ ..+.++|..+.+....- .+. ...-....+ ++++++.|+.+ ..+.+
T Consensus 28 ~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~-~~h----~~~v~~~~~~~~~~~l~s~~~d-----~~i~v 91 (312)
T 4ery_A 28 SVKFSPNGEWLASSSAD------KLIKIWGAYDGKFEKTI-SGH----KLGISDVAWSSDSNLLVSASDD-----KTLKI 91 (312)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEE-CCC----SSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred EEEECCCCCEEEEeeCC------CeEEEEeCCCcccchhh-ccC----CCceEEEEEcCCCCEEEEECCC-----CEEEE
Confidence 33443333355666543 34788898887766532 111 111122222 45677777654 35888
Q ss_pred EECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcc
Q 010011 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~ 193 (520)
||+.+.+-...- .+. .. .-.++... ++.+++.|+. ...+.++|+.+.+-...-. .. ...-
T Consensus 92 wd~~~~~~~~~~-~~~--~~-~v~~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~--~~--~~~v 152 (312)
T 4ery_A 92 WDVSSGKCLKTL-KGH--SN-YVFCCNFNPQSNLIVSGSF-----------DESVRIWDVKTGKCLKTLP--AH--SDPV 152 (312)
T ss_dssp EETTTCCEEEEE-ECC--SS-CEEEEEECSSSSEEEEEET-----------TSCEEEEETTTCCEEEEEC--CC--SSCE
T ss_pred EECCCCcEEEEE-cCC--CC-CEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCEEEEEec--CC--CCcE
Confidence 998876543211 010 00 01112222 3566677773 2347788887665332211 00 0011
Q ss_pred eeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEE
Q 010011 194 HTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (520)
Q Consensus 194 h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~ 272 (520)
.++.. .++.+++.|+.++ .+..||+.+.+....... .........+..-+++.++.|+.. +.+.+
T Consensus 153 ~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i 218 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLD------NTLKL 218 (312)
T ss_dssp EEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETT------TEEEE
T ss_pred EEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCC------CeEEE
Confidence 11222 2566777777543 488899887664432211 111111112222345666666653 34899
Q ss_pred EecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 273 IDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 273 yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
||+.+..-......... ......... ...++.+++.|+.+..
T Consensus 219 wd~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~l~sg~~dg~ 260 (312)
T 4ery_A 219 WDYSKGKCLKTYTGHKN--EKYCIFANF--SVTGGKWIVSGSEDNL 260 (312)
T ss_dssp EETTTTEEEEEECSSCC--SSSCCCEEE--ECSSSCEEEECCTTSC
T ss_pred EECCCCcEEEEEEecCC--ceEEEEEEE--EeCCCcEEEEECCCCE
Confidence 99988754333221111 111111111 1245667788876654
No 42
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.44 E-value=0.13 Score=52.39 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=107.9
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CC-EEEEEcCCCCCCCCCcEEEEEC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GE-NLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
+++++| ++++.... ...++++|+.+++...+.. .+ . ...+..+ ++ +|++.+..++ ...++++|+
T Consensus 188 pdg~~l-a~~s~~~~---~~~i~~~d~~tg~~~~l~~---~~--~-~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~ 254 (415)
T 2hqs_A 188 PDGSKL-AYVTFESG---RSALVIQTLANGAVRQVAS---FP--R-HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDL 254 (415)
T ss_dssp TTSSEE-EEEECTTS---SCEEEEEETTTCCEEEEEC---CS--S-CEEEEEECTTSSEEEEEECTTS---SCEEEEEET
T ss_pred CCCCEE-EEEEecCC---CcEEEEEECCCCcEEEeec---CC--C-cccCEEEcCCCCEEEEEEecCC---CceEEEEEC
Confidence 455544 44444321 2579999999988776541 11 1 1222222 34 4665554332 246999999
Q ss_pred CCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeE
Q 010011 118 SSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (520)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~ 196 (520)
.+.+...+.. .. ......+.. +++.+++++.. . -...++++|+.+.+...+... ......+
T Consensus 255 ~~~~~~~l~~---~~--~~~~~~~~spdg~~l~~~s~~-----~---g~~~i~~~d~~~~~~~~l~~~-----~~~~~~~ 316 (415)
T 2hqs_A 255 ASGQIRQVTD---GR--SNNTEPTWFPDSQNLAFTSDQ-----A---GRPQVYKVNINGGAPQRITWE-----GSQNQDA 316 (415)
T ss_dssp TTCCEEECCC---CS--SCEEEEEECTTSSEEEEEECT-----T---SSCEEEEEETTSSCCEECCCS-----SSEEEEE
T ss_pred CCCCEEeCcC---CC--CcccceEECCCCCEEEEEECC-----C---CCcEEEEEECCCCCEEEEecC-----CCcccCe
Confidence 9887755431 11 111122222 45544444411 0 124689999988775555321 1112222
Q ss_pred Ee-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEec
Q 010011 197 SS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 197 ~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
+. .+++.+++++.... ...++.+|+.+.+...+... ......+..-+++.+++++.... ...++++|+
T Consensus 317 ~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~s~~~~---~~~l~~~d~ 385 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSST-----FLDETPSLAPNGTMVIYSSSQGM---GSVLNLVST 385 (415)
T ss_dssp EECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCCS-----SSCEEEEECTTSSEEEEEEEETT---EEEEEEEET
T ss_pred EECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecCC-----CCcCCeEEcCCCCEEEEEEcCCC---ccEEEEEEC
Confidence 22 25555555554322 24699999999888765431 12222222335666666665432 236999999
Q ss_pred CCCcEEEeee
Q 010011 276 DSGLWTKVIT 285 (520)
Q Consensus 276 ~~~~W~~l~~ 285 (520)
.......+..
T Consensus 386 ~g~~~~~l~~ 395 (415)
T 2hqs_A 386 DGRFKARLPA 395 (415)
T ss_dssp TSCCEEECCC
T ss_pred CCCcEEEeeC
Confidence 8887766643
No 43
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.41 E-value=0.4 Score=48.21 Aligned_cols=224 Identities=11% Similarity=-0.006 Sum_probs=111.2
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCce
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (520)
.+|.+|+.+.++..+.. .+....-.+++.. ++++++.++.+ ..++++|+.+.+.......+..........
T Consensus 102 ~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 102 KLIALDKEGITHRFISR---FKTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp CEEECCBTTCSEEEEEE---EECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred EEEEECCCCCcceEEEE---EcCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCcee
Confidence 68888887776555431 1111111222222 67888887653 359999999887654321100111111112
Q ss_pred EEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee--CCEEEEEecCCCCCcc
Q 010011 140 AALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYY 215 (520)
Q Consensus 140 ~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~--~~~lyv~GG~~~~~~~ 215 (520)
.+.. ++++|+.|+. ...+.++|+.+.+....-. .....-.+++.. ++.+|+.++.+
T Consensus 174 ~~~~~~~~~~~~s~~~-----------d~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~----- 233 (433)
T 3bws_A 174 TISIPEHNELWVSQMQ-----------ANAVHVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWIS----- 233 (433)
T ss_dssp EEEEGGGTEEEEEEGG-----------GTEEEEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTT-----
T ss_pred EEEEcCCCEEEEEECC-----------CCEEEEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCC-----
Confidence 2223 5778887762 2568899988754332211 011111223322 45566666543
Q ss_pred cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCC--ccCcEEEEecCCCcEEEeeeCCCCCCC
Q 010011 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQN--LYDDLYMIDVDSGLWTKVITTGEGPSA 292 (520)
Q Consensus 216 ~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~--~~~dv~~yd~~~~~W~~l~~~~~~p~~ 292 (520)
..+.+||+.+.+...... ....-.+++.. +++.+++++...... .-..+++||+.+..-........
T Consensus 234 -~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---- 303 (433)
T 3bws_A 234 -EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---- 303 (433)
T ss_dssp -TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE----
T ss_pred -CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC----
Confidence 358999998876544322 11112233332 444555555432211 12468999998876544322111
Q ss_pred ceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecc
Q 010011 293 RFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (520)
Q Consensus 293 r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (520)
.....++ ...++.+++.++.+. .+..++..
T Consensus 304 --~~~~~~~-~~~g~~l~~~~~~~~------~v~v~d~~ 333 (433)
T 3bws_A 304 --NKRHIVS-GNTENKIYVSDMCCS------KIEVYDLK 333 (433)
T ss_dssp --CEEEEEE-CSSTTEEEEEETTTT------EEEEEETT
T ss_pred --CcceEEE-CCCCCEEEEEecCCC------EEEEEECC
Confidence 1111222 234557777765443 35555544
No 44
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.38 E-value=0.89 Score=45.00 Aligned_cols=186 Identities=15% Similarity=0.251 Sum_probs=103.6
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
++.||+... ...++.||..++ .|+... .+ ....+.+..++.||+..+ ...++.||+.+.
T Consensus 103 ~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~-~~-----~~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG 163 (376)
T 3q7m_A 103 GGHVYIGSE-------KAQVYALNTSDGTVAWQTKV-AG-----EALSRPVVSDGLVLIHTS------NGQLQALNEADG 163 (376)
T ss_dssp TTEEEEEET-------TSEEEEEETTTCCEEEEEEC-SS-----CCCSCCEEETTEEEEECT------TSEEEEEETTTC
T ss_pred CCEEEEEcC-------CCEEEEEECCCCCEEEEEeC-CC-----ceEcCCEEECCEEEEEcC------CCeEEEEECCCC
Confidence 556777432 146999999876 477622 11 112233456888887543 246999999876
Q ss_pred e--EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCC--CCCCC---
Q 010011 121 T--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGN--PPSAR--- 191 (520)
Q Consensus 121 ~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~--~p~~r--- 191 (520)
+ |+.... .+....+...+.+..++.+|+ |.. ...++.+|+.+. .|+.-..... ....+
T Consensus 164 ~~~W~~~~~-~~~~~~~~~~~~~~~~~~v~~-g~~-----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 230 (376)
T 3q7m_A 164 AVKWTVNLD-MPSLSLRGESAPTTAFGAAVV-GGD-----------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSD 230 (376)
T ss_dssp CEEEEEECC-C-----CCCCCCEEETTEEEE-CCT-----------TTEEEEEETTTCCEEEEEECCC-----------C
T ss_pred cEEEEEeCC-CCceeecCCCCcEEECCEEEE-EcC-----------CCEEEEEECCCCcEEEEEecccCCCCcccccccc
Confidence 5 875331 111111222344555777776 331 135889998754 5775432100 00000
Q ss_pred cceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCc
Q 010011 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (520)
Q Consensus 192 ~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~d 269 (520)
.....+..++.+|+.+. ...++++|+++.+ |+.-.. ...+.+..++.+|+.... ..
T Consensus 231 ~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l~~~~~~-------g~ 288 (376)
T 3q7m_A 231 VDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKRELG--------SVNDFIVDGNRIYLVDQN-------DR 288 (376)
T ss_dssp CCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEECCC--------CEEEEEEETTEEEEEETT-------CC
T ss_pred cCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeeccCC--------CCCCceEECCEEEEEcCC-------Ce
Confidence 12333455788887542 2358999998764 664311 123455668888886532 34
Q ss_pred EEEEecCCCc--EEE
Q 010011 270 LYMIDVDSGL--WTK 282 (520)
Q Consensus 270 v~~yd~~~~~--W~~ 282 (520)
+++||+++++ |+.
T Consensus 289 l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 289 VMALTIDGGVTLWTQ 303 (376)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEEECCCCcEEEee
Confidence 9999998875 664
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.33 E-value=0.48 Score=45.32 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=95.3
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~y 115 (520)
+.+..++.+++.|+ + ..+.+||..+.........-........-.++.+ +++.++.|+.+ ..+.+|
T Consensus 57 ~~~~~~~~~l~~~~-d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~ 124 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-K------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLSIW 124 (337)
T ss_dssp EEECSSSSEEEEEC-B------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEEEE
T ss_pred EEEecCCcEEEEcC-C------CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEE
Confidence 34433334555665 2 4588899876542211000000011111222222 45566666543 468999
Q ss_pred ECCCCeEEeecccCCCCCCCCCc-eEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcc
Q 010011 116 DTSSHTWISPSVRGEGPEAREGH-SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~h-s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~ 193 (520)
|+.+.+....... ....... +++.. ++.+++.|+. ...+.+||+.+.+....-. .... .-
T Consensus 125 d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~v~~~d~~~~~~~~~~~---~~~~-~i 186 (337)
T 1gxr_A 125 DLAAPTPRIKAEL---TSSAPACYALAISPDSKVCFSCCS-----------DGNIAVWDLHNQTLVRQFQ---GHTD-GA 186 (337)
T ss_dssp ECCCC--EEEEEE---ECSSSCEEEEEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEEC---CCSS-CE
T ss_pred ECCCCCcceeeec---ccCCCceEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCceeeeee---cccC-ce
Confidence 9988775432211 1111111 22222 4556666663 2457889988765443321 1111 11
Q ss_pred eeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcEE
Q 010011 194 HTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLY 271 (520)
Q Consensus 194 h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~ 271 (520)
.++.. .++..++.|+.+ ..+..||+.+.+-..... ... .-.++.. -+++++++|+.. ..+.
T Consensus 187 ~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~---~~~--~v~~~~~s~~~~~l~~~~~~------~~i~ 249 (337)
T 1gxr_A 187 SCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---FTS--QIFSLGYCPTGEWLAVGMES------SNVE 249 (337)
T ss_dssp EEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---CSS--CEEEEEECTTSSEEEEEETT------SCEE
T ss_pred EEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec---CCC--ceEEEEECCCCCEEEEEcCC------CcEE
Confidence 22222 256677777643 348899988765443322 111 1122222 245677777653 2489
Q ss_pred EEecCCCcEEE
Q 010011 272 MIDVDSGLWTK 282 (520)
Q Consensus 272 ~yd~~~~~W~~ 282 (520)
+||+.+..-..
T Consensus 250 ~~~~~~~~~~~ 260 (337)
T 1gxr_A 250 VLHVNKPDKYQ 260 (337)
T ss_dssp EEETTSSCEEE
T ss_pred EEECCCCCeEE
Confidence 99998876443
No 46
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.32 E-value=0.85 Score=44.32 Aligned_cols=210 Identities=12% Similarity=0.050 Sum_probs=100.9
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCce
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (520)
..+.++|..+.+-...-... +. .....+..-+++.++.|+.+ ..+.+||..+..-...- .. ....-.+
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~--~~-~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~~~-~~---~~~~v~~ 169 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAG--PV-DAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEYSL-DT---RGKFILS 169 (321)
T ss_dssp SEEEEEETTTTEEEEEEECC--TT-CCCCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEEEE-EC---SSSCEEE
T ss_pred CcEEEEECCCCCEEEEEeCC--Cc-cEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeEEe-cC---CCceEEE
Confidence 45888998887644321111 11 11111112255667777653 35788888766532211 00 0111112
Q ss_pred EEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCc
Q 010011 140 AALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD 218 (520)
Q Consensus 140 ~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~ 218 (520)
++.. ++++++.|+. ...+.++|+.+.+-...-. .. .......+...++.+++.|+.++ .
T Consensus 170 ~~~spdg~~lasg~~-----------dg~i~iwd~~~~~~~~~~~--~h-~~~v~~l~~spd~~~l~s~s~dg------~ 229 (321)
T 3ow8_A 170 IAYSPDGKYLASGAI-----------DGIINIFDIATGKLLHTLE--GH-AMPIRSLTFSPDSQLLVTASDDG------Y 229 (321)
T ss_dssp EEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEEC--CC-SSCCCEEEECTTSCEEEEECTTS------C
T ss_pred EEECCCCCEEEEEcC-----------CCeEEEEECCCCcEEEEEc--cc-CCceeEEEEcCCCCEEEEEcCCC------e
Confidence 2222 4567777773 2357788988765432211 00 11111111223677788887653 3
Q ss_pred eEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeee
Q 010011 219 VHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVA 297 (520)
Q Consensus 219 i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~ 297 (520)
+.+||..+......-. .....-.+++.. +++.++.|+.+. .+.+||+.+.+-...... ......
T Consensus 230 i~iwd~~~~~~~~~~~----~h~~~v~~~~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~-----h~~~v~ 294 (321)
T 3ow8_A 230 IKIYDVQHANLAGTLS----GHASWVLNVAFCPDDTHFVSSSSDK------SVKVWDVGTRTCVHTFFD-----HQDQVW 294 (321)
T ss_dssp EEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECC-----CSSCEE
T ss_pred EEEEECCCcceeEEEc----CCCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCCCEEEEEEcC-----CCCcEE
Confidence 8889988765443221 011111122222 456777777543 389999987653332111 111122
Q ss_pred eeeeccccCCEEEEEcccCCC
Q 010011 298 GDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 298 ~~~~~~~~~~~l~v~GG~~~~ 318 (520)
++.+ ..++..++.||.+..
T Consensus 295 ~v~~--s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 295 GVKY--NGNGSKIVSVGDDQE 313 (321)
T ss_dssp EEEE--CTTSSEEEEEETTCC
T ss_pred EEEE--CCCCCEEEEEeCCCe
Confidence 2222 235566777776654
No 47
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.31 E-value=0.76 Score=49.11 Aligned_cols=119 Identities=9% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEEC-CCC--eEEeeeccCC--CCCC---CCcceEEEECCEEEEEcCCCCCCCCCcEEE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDT-VNQ--TWSQPVIKGS--PPTP---RDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~-~t~--~W~~l~~~g~--~P~~---R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~ 114 (520)
++.||+.... ...++.+|. .++ .|+.-..... .+.. ....+.+..+++||+... -..+++
T Consensus 62 ~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLA 129 (571)
T ss_dssp TTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEE
T ss_pred CCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEE
Confidence 5678887542 246899998 765 5886221000 0000 122345667899998753 246999
Q ss_pred EECCCCe--EEeecccCCCCCC-CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEc
Q 010011 115 LDTSSHT--WISPSVRGEGPEA-REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 181 (520)
Q Consensus 115 yd~~t~~--W~~~~~~g~~p~~-r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v 181 (520)
+|..+.+ |+.... ..+.. ....+-++.++.+|+-.+.. +......++.||..+. .|+.-
T Consensus 130 lD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~------~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 130 LDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGA------ELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCG------GGTCCCEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCC------ccCCCCEEEEEECCCCcEEEEEc
Confidence 9998864 875321 11111 11223345678887753310 0112356899999864 57754
No 48
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.27 E-value=0.28 Score=49.97 Aligned_cols=222 Identities=9% Similarity=-0.015 Sum_probs=113.5
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
..++++|.....-..+.... ..-....+ +++.+++++.++. ...++++|+.+.+...+.. .+. ..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~------~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~---~~~--~~ 225 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP------QPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVAS---FPR--HN 225 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES------SCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEEC---CSS--CE
T ss_pred ceEEEEcCCCCCCEEEeCCC------CcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeec---CCC--cc
Confidence 57899998766555543111 11112222 4555555554332 2579999999988765541 111 11
Q ss_pred ceEEEE-CCE-EEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCc
Q 010011 138 HSAALV-GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDY 214 (520)
Q Consensus 138 hs~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~ 214 (520)
.+.+.. +++ |++.+... -...++++|+.+.+...+... . . ....+.. -+++.+++++....
T Consensus 226 ~~~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~~l~~~---~-~-~~~~~~~spdg~~l~~~s~~~g-- 289 (415)
T 2hqs_A 226 GAPAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIRQVTDG---R-S-NNTEPTWFPDSQNLAFTSDQAG-- 289 (415)
T ss_dssp EEEEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEEECCCC---S-S-CEEEEEECTTSSEEEEEECTTS--
T ss_pred cCEEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEEeCcCC---C-C-cccceEECCCCCEEEEEECCCC--
Confidence 122222 344 55444421 135699999998887766421 1 1 1112222 25555555543221
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE-EECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCc
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSAR 293 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~-~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r 293 (520)
...++.+|+.+.+-..+.. ......+.. .-+++.+++++..+. ...++++|+++.....+... .
T Consensus 290 -~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~~---~--- 354 (415)
T 2hqs_A 290 -RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSST---F--- 354 (415)
T ss_dssp -SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCCS---S---
T ss_pred -CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecCC---C---
Confidence 2468999998877554432 111222222 234555555554321 34699999999988665432 1
Q ss_pred eeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecc
Q 010011 294 FSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (520)
Q Consensus 294 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (520)
......+ ..++..+++++.+.. ...+|.+++.
T Consensus 355 -~~~~~~~--spdg~~l~~~s~~~~---~~~l~~~d~~ 386 (415)
T 2hqs_A 355 -LDETPSL--APNGTMVIYSSSQGM---GSVLNLVSTD 386 (415)
T ss_dssp -SCEEEEE--CTTSSEEEEEEEETT---EEEEEEEETT
T ss_pred -CcCCeEE--cCCCCEEEEEEcCCC---ccEEEEEECC
Confidence 1111222 235555666654332 2357777754
No 49
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.27 E-value=0.27 Score=49.93 Aligned_cols=187 Identities=13% Similarity=0.196 Sum_probs=98.5
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
+++ .++.|+.+ ..+.+||..+.+-...- .+ ....-.+...++.+++.|+.+ ..+.++|..+.+
T Consensus 142 d~~-~l~~g~~d------g~i~iwd~~~~~~~~~~-~~----h~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~ 204 (435)
T 1p22_A 142 DDQ-KIVSGLRD------NTIKIWDKNTLECKRIL-TG----HTGSVLCLQYDERVIITGSSD-----STVRVWDVNTGE 204 (435)
T ss_dssp CSS-EEEEEESS------SCEEEEESSSCCEEEEE-CC----CSSCEEEEECCSSEEEEEETT-----SCEEEEESSSCC
T ss_pred CCC-EEEEEeCC------CeEEEEeCCCCeEEEEE-cC----CCCcEEEEEECCCEEEEEcCC-----CeEEEEECCCCc
Confidence 444 55666643 45889998887654421 11 112223444477788888765 358889988876
Q ss_pred EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCC
Q 010011 122 WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKN 201 (520)
Q Consensus 122 W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~ 201 (520)
....- ........++...+..++.|+. ...+.++|+.+..-..... ..........++..++
T Consensus 205 ~~~~~-----~~h~~~v~~l~~~~~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~ 266 (435)
T 1p22_A 205 MLNTL-----IHHCEAVLHLRFNNGMMVTCSK-----------DRSIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDD 266 (435)
T ss_dssp EEEEE-----CCCCSCEEEEECCTTEEEEEET-----------TSCEEEEECSSSSCCEEEE--EECCCSSCEEEEEEET
T ss_pred EEEEE-----cCCCCcEEEEEEcCCEEEEeeC-----------CCcEEEEeCCCCCCceeee--EecCCCCcEEEEEeCC
Confidence 53221 1111122333345556666763 2457778876543211000 0000111122333466
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcE
Q 010011 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
..++.|+.+ ..+.+||+.+.+-...-. .......++..++.+++.|+.+. .+.+||+.+..-
T Consensus 267 ~~l~s~~~d------g~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~g~~dg------~i~iwd~~~~~~ 328 (435)
T 1p22_A 267 KYIVSASGD------RTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRDRLVVSGSSDN------TIRLWDIECGAC 328 (435)
T ss_dssp TEEEEEETT------SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTEEEEEETTS------CEEEEETTTCCE
T ss_pred CEEEEEeCC------CeEEEEECCcCcEEEEEc-----CCCCcEEEEEeCCCEEEEEeCCC------eEEEEECCCCCE
Confidence 667777654 347889988765433221 11112234444566777777543 489999988753
No 50
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.24 E-value=0.34 Score=48.56 Aligned_cols=210 Identities=17% Similarity=0.156 Sum_probs=99.4
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceE
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~ 140 (520)
.+.+||..+.+....- ......-.+...++.+++.|+.+ ..+.+||+.+..-......+ . ...-.++
T Consensus 157 ~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~-~--~~~v~~~ 223 (401)
T 4aez_A 157 LVDIYDVESQTKLRTM-----AGHQARVGCLSWNRHVLSSGSRS-----GAIHHHDVRIANHQIGTLQG-H--SSEVCGL 223 (401)
T ss_dssp CEEEEETTTCCEEEEE-----CCCSSCEEEEEEETTEEEEEETT-----SEEEEEETTSSSCEEEEEEC-C--SSCEEEE
T ss_pred eEEEEECcCCeEEEEe-----cCCCCceEEEEECCCEEEEEcCC-----CCEEEEecccCcceeeEEcC-C--CCCeeEE
Confidence 4777887776544321 11112223334456677777654 45888888743211111111 0 0011122
Q ss_pred EEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee--CCEEEEEecCCCCCcccC
Q 010011 141 ALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLS 217 (520)
Q Consensus 141 ~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~--~~~lyv~GG~~~~~~~~~ 217 (520)
... ++.+++.|+. ...+.+||+.+.+-...-. .... .-.+++.. +..+++.||... -.
T Consensus 224 ~~~~~~~~l~s~~~-----------d~~v~iwd~~~~~~~~~~~--~~~~--~v~~~~~~p~~~~ll~~~~gs~----d~ 284 (401)
T 4aez_A 224 AWRSDGLQLASGGN-----------DNVVQIWDARSSIPKFTKT--NHNA--AVKAVAWCPWQSNLLATGGGTM----DK 284 (401)
T ss_dssp EECTTSSEEEEEET-----------TSCEEEEETTCSSEEEEEC--CCSS--CCCEEEECTTSTTEEEEECCTT----TC
T ss_pred EEcCCCCEEEEEeC-----------CCeEEEccCCCCCccEEec--CCcc--eEEEEEECCCCCCEEEEecCCC----CC
Confidence 222 4567777773 2457888887654332211 1111 11222222 456777775321 23
Q ss_pred ceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-C-CEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCcee
Q 010011 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G-KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS 295 (520)
Q Consensus 218 ~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~ 295 (520)
.+..||..+.+-...-.. .. .-.+++.. + ..+++.+|..+ +.+.+||+.+.....+....... ..
T Consensus 285 ~i~i~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~~l~~~~g~~d-----g~i~v~~~~~~~~~~~~~~~~h~---~~ 351 (401)
T 4aez_A 285 QIHFWNAATGARVNTVDA---GS--QVTSLIWSPHSKEIMSTHGFPD-----NNLSIWSYSSSGLTKQVDIPAHD---TR 351 (401)
T ss_dssp EEEEEETTTCCEEEEEEC---SS--CEEEEEECSSSSEEEEEECTTT-----CEEEEEEEETTEEEEEEEEECCS---SC
T ss_pred EEEEEECCCCCEEEEEeC---CC--cEEEEEECCCCCeEEEEeecCC-----CcEEEEecCCccceeEEEecCCC---CC
Confidence 588999887654433221 11 11122222 3 34555545433 34899999987776654321111 11
Q ss_pred eeeeeeccccCCEEEEEcccCC
Q 010011 296 VAGDCLDPLKGGVLVFIGGCNK 317 (520)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~ 317 (520)
.....+ ..++.+++.||.++
T Consensus 352 v~~~~~--s~dg~~l~s~~~dg 371 (401)
T 4aez_A 352 VLYSAL--SPDGRILSTAASDE 371 (401)
T ss_dssp CCEEEE--CTTSSEEEEECTTS
T ss_pred EEEEEE--CCCCCEEEEEeCCC
Confidence 111222 33566677777654
No 51
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.20 E-value=0.8 Score=50.02 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=72.7
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccCC--CCC---CCCCceEEEECCEEEEEeCCCCCCCCC
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGE--GPE---AREGHSAALVGKRLFIFGGCGKSSNTN 160 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~--~p~---~r~~hs~~~~~~~lyv~GG~~~~~~~~ 160 (520)
.+-++.++.||+... .+.++.+|..|.+ |+....... .+. .....+.++.+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------- 136 (677)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--------
T ss_pred eCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC--------
Confidence 344567999999864 2579999998866 875331100 000 0122345567888888643
Q ss_pred CcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEee
Q 010011 161 DEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (520)
Q Consensus 161 ~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~ 233 (520)
...++.+|..+. .|+.-.............+.++.++.+|+-.+... ......++.||.++.+ |+.-.
T Consensus 137 ----dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 137 ----DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp ----TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred ----CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 246899998765 58765320011101122233456888777543221 1134569999998765 87654
No 52
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.20 E-value=0.46 Score=46.33 Aligned_cols=208 Identities=14% Similarity=0.139 Sum_probs=96.1
Q ss_pred EEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecc
Q 010011 48 VFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSV 127 (520)
Q Consensus 48 i~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~ 127 (520)
.+|.+.......-.+|.+|..++++..+........| ..-+..-+++||+.+... ....+++||+.+.+++.+..
T Consensus 6 ~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p--~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 6 LFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNP--TYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCC--CCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEE
T ss_pred EEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCc--ceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeee
Confidence 4465543322223477778888888775422222111 112222266777765321 12468999998888766542
Q ss_pred cCCCCCCCCCceEEEE-CC-EEEEEeCCCCCCCCCCcceeceeEEEEcC-cceEEEc---ccCCCCCCCCc----ceeEE
Q 010011 128 RGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRA---TTSGNPPSARD----SHTCS 197 (520)
Q Consensus 128 ~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~-t~~W~~v---~~~~~~p~~r~----~h~~~ 197 (520)
.. .....-..++.. ++ .||+.+.. ...+.+|++. +...+.+ ...+..|.+|. -+.++
T Consensus 81 ~~--~~~~~p~~~a~spdg~~l~~~~~~-----------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 147 (347)
T 3hfq_A 81 VV--APGTPPAYVAVDEARQLVYSANYH-----------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD 147 (347)
T ss_dssp EE--EESCCCSEEEEETTTTEEEEEETT-----------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred ee--cCCCCCEEEEECCCCCEEEEEeCC-----------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence 10 011111223333 34 56666531 2346677764 2233322 22222222221 22233
Q ss_pred e-eCCEEEEEecCCCCCcccCceEEEECC-CCcEEEeeCCCCCCCCCceeEEEEECC-EEEEEecccCCCCccCcEEEEe
Q 010011 198 S-WKNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNLYDDLYMID 274 (520)
Q Consensus 198 ~-~~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~dv~~yd 274 (520)
. -++++|+.+..+ +.+.+||+. +.+...+......+...-.+.+..-++ .+|+.+... +.+.+|+
T Consensus 148 ~spdg~l~v~~~~~------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~------~~v~v~~ 215 (347)
T 3hfq_A 148 LTPDNRLAVIDLGS------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS------SQIASLK 215 (347)
T ss_dssp ECTTSCEEEEETTT------TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------TEEEEEE
T ss_pred ECCCCcEEEEeCCC------CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC------CEEEEEE
Confidence 2 255677665322 358888887 565554432100111111122222234 477765432 3355665
Q ss_pred cC--CCcEEEeee
Q 010011 275 VD--SGLWTKVIT 285 (520)
Q Consensus 275 ~~--~~~W~~l~~ 285 (520)
+. ++.+..+..
T Consensus 216 ~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 216 YDTQTGAFTQLGI 228 (347)
T ss_dssp EETTTTEEEEEEE
T ss_pred ecCCCCceEEeee
Confidence 55 577665543
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.14 E-value=1.2 Score=44.03 Aligned_cols=227 Identities=9% Similarity=0.004 Sum_probs=104.5
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~y 115 (520)
++.+..++.+++.|+.+ ..+.+||........+. +. ...-.+++.. +++.++.|+.+ ..+.+|
T Consensus 113 ~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw 176 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVEN------GELRLWNKTGALLNVLN--FH---RAPIVSVKWNKDGTHIISMDVE-----NVTILW 176 (425)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTSCEEEEEC--CC---CSCEEEEEECTTSSEEEEEETT-----CCEEEE
T ss_pred EEEEcCCCCEEEEEeCC------CeEEEEeCCCCeeeecc--CC---CccEEEEEECCCCCEEEEEecC-----CeEEEE
Confidence 44443333455666543 34788885444444432 11 1111222222 45555566543 358889
Q ss_pred ECCCCeEEeecccCCCC-----------CCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccC
Q 010011 116 DTSSHTWISPSVRGEGP-----------EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS 184 (520)
Q Consensus 116 d~~t~~W~~~~~~g~~p-----------~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~ 184 (520)
|+.+......-.....+ ....-.+++...+..++.|+. ...+.+||+.+.+-...-.
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~i~~~d~~~~~~~~~~~- 244 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-----------KGAIFVYQITEKTPTGKLI- 244 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG-----------GGCEEEEETTCSSCSEEEC-
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC-----------CCeEEEEEcCCCceeeeec-
Confidence 98877654322110110 000022333334445666663 3568888887653211110
Q ss_pred CCCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCC
Q 010011 185 GNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (520)
Q Consensus 185 ~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~ 263 (520)
.....-.+++.. ++.+++.|+.++ .+.+||..+.+....-. .....-.++....+.+++.|+..
T Consensus 245 ---~~~~~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~d-- 309 (425)
T 1r5m_A 245 ---GHHGPISVLEFNDTNKLLLSASDDG------TLRIWHGGNGNSQNCFY----GHSQSIVSASWVGDDKVISCSMD-- 309 (425)
T ss_dssp ---CCSSCEEEEEEETTTTEEEEEETTS------CEEEECSSSBSCSEEEC----CCSSCEEEEEEETTTEEEEEETT--
T ss_pred ---cCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCCccceEec----CCCccEEEEEECCCCEEEEEeCC--
Confidence 011111222222 566777776543 47888877654322211 11112223333333366666653
Q ss_pred CCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCC
Q 010011 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (520)
Q Consensus 264 ~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (520)
..+.+||+.+..-......... ......+ ..++.+++.|+.+.
T Consensus 310 ----~~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~--s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 310 ----GSVRLWSLKQNTLLALSIVDGV-----PIFAGRI--SQDGQKYAVAFMDG 352 (425)
T ss_dssp ----SEEEEEETTTTEEEEEEECTTC-----CEEEEEE--CTTSSEEEEEETTS
T ss_pred ----CcEEEEECCCCcEeEecccCCc-----cEEEEEE--cCCCCEEEEEECCC
Confidence 3489999988764433322111 1122222 23556677776554
No 54
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.12 E-value=0.61 Score=43.34 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=96.4
Q ss_pred CeEEEEECCC-CeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCc
Q 010011 60 NQVHVFDTVN-QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (520)
Q Consensus 60 ~~~~~yd~~t-~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (520)
..++++|+.+ .+...+.. +. ...........-+++.+++++.... ....+|.+|..+.....+... . . ..
T Consensus 62 ~~i~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~---~-~--~~ 132 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKVDT-GF-ATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKN---L-P--SY 132 (297)
T ss_dssp TEEEEEESSSCCSCEECCC-TT-CCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSS---S-S--EE
T ss_pred CeEEEEeCCCCCCceEecc-cc-ccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecC---C-C--cc
Confidence 4699999998 77666431 11 1111122222224555555543221 346789999887665444311 1 1 12
Q ss_pred eEEEE-CC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEec-CCCCCc
Q 010011 139 SAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGG-EDGHDY 214 (520)
Q Consensus 139 s~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG-~~~~~~ 214 (520)
..... ++ .|++.++.. . ...+|.++..+.....+... + ... ..+.. .+++.+++++ .++
T Consensus 133 ~~~~spdg~~l~~~~~~~------~---~~~l~~~~~~~~~~~~~~~~---~-~~~-~~~~~s~dg~~l~~~~~~~~--- 195 (297)
T 2ojh_A 133 WHGWSPDGKSFTYCGIRD------Q---VFDIYSMDIDSGVETRLTHG---E-GRN-DGPDYSPDGRWIYFNSSRTG--- 195 (297)
T ss_dssp EEEECTTSSEEEEEEEET------T---EEEEEEEETTTCCEEECCCS---S-SCE-EEEEECTTSSEEEEEECTTS---
T ss_pred ceEECCCCCEEEEEECCC------C---ceEEEEEECCCCcceEcccC---C-Ccc-ccceECCCCCEEEEEecCCC---
Confidence 22222 33 455444421 1 23678888887777666421 1 111 12222 2455444443 332
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE-EECCEEEEEecccCCCC-----ccCcEEEEecCCCcEEEeee
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQN-----LYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~-~~~~~iyv~GG~~~~~~-----~~~dv~~yd~~~~~W~~l~~ 285 (520)
...+|.+++.+.....+... . ....... .-+++.+++++...... ....++++|+++.....+..
T Consensus 196 -~~~i~~~~~~~~~~~~~~~~----~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 196 -QMQIWRVRVDGSSVERITDS----A-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp -SCEEEEEETTSSCEEECCCC----S-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred -CccEEEECCCCCCcEEEecC----C-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 34688888877776665431 1 1111122 22455555555432211 12569999999988766653
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.08 E-value=1.1 Score=45.34 Aligned_cols=185 Identities=17% Similarity=0.200 Sum_probs=97.3
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
+++ .++.|+.+ ..+.+||..+.+-...- .+ ....-.+....+.+++.|+.+ ..+.++|+.+.+
T Consensus 128 ~g~-~l~sg~~d------g~i~vwd~~~~~~~~~~-~~----h~~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~ 190 (445)
T 2ovr_B 128 CGN-RIVSGSDD------NTLKVWSAVTGKCLRTL-VG----HTGGVWSSQMRDNIIISGSTD-----RTLKVWNAETGE 190 (445)
T ss_dssp ETT-EEEEEETT------SCEEEEETTTCCEEEEC-CC----CSSCEEEEEEETTEEEEEETT-----SCEEEEETTTTE
T ss_pred cCC-EEEEEECC------CcEEEEECCCCcEEEEE-cC----CCCCEEEEEecCCEEEEEeCC-----CeEEEEECCcCc
Confidence 355 44556532 45889998877644311 11 111222333345566677654 358899998876
Q ss_pred EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCC
Q 010011 122 WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKN 201 (520)
Q Consensus 122 W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~ 201 (520)
-...- ........+...++..++.|+. ...+.++|+.+.+-...-. .......++..++
T Consensus 191 ~~~~~-----~~h~~~v~~~~~~~~~l~s~s~-----------dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~ 249 (445)
T 2ovr_B 191 CIHTL-----YGHTSTVRCMHLHEKRVVSGSR-----------DATLRVWDIETGQCLHVLM-----GHVAAVRCVQYDG 249 (445)
T ss_dssp EEEEE-----CCCSSCEEEEEEETTEEEEEET-----------TSEEEEEESSSCCEEEEEE-----CCSSCEEEEEECS
T ss_pred EEEEE-----CCCCCcEEEEEecCCEEEEEeC-----------CCEEEEEECCCCcEEEEEc-----CCcccEEEEEECC
Confidence 43221 1111112233334455666663 2457888887654332211 0111223344477
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
..++.|+.++ .+..||+.+.+-...-. .......++..++..++.|+.+. .+.+||+.+..-.
T Consensus 250 ~~l~~~~~dg------~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 250 RRVVSGAYDF------MVKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVETGNCI 312 (445)
T ss_dssp SCEEEEETTS------CEEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETTS------CEEEEETTTCCEE
T ss_pred CEEEEEcCCC------EEEEEECCCCcEeEEec-----CCCCceEEEEECCCEEEEEeCCC------eEEEEECCCCCEE
Confidence 7777777543 47888887664332211 11122234444777777777643 4899999887643
No 56
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.05 E-value=0.21 Score=50.35 Aligned_cols=202 Identities=9% Similarity=-0.020 Sum_probs=103.4
Q ss_pred EEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEE
Q 010011 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 39 ~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
++..++.+++.++.+ ..+.+||+.+++.......+........-.++.+ ++++|+.|+.+ ..+.+||
T Consensus 129 ~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~d 197 (433)
T 3bws_A 129 RFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVFD 197 (433)
T ss_dssp EESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEEE
T ss_pred EEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEEE
Confidence 333356677776532 3489999998876653211011111112222333 67888887643 4689999
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcce
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h 194 (520)
+.+.+....-. .....-.+++.. ++.+|+.++. ...+.++|+.+.+....-.. ...-.
T Consensus 198 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~-----~~~~~ 257 (433)
T 3bws_A 198 LKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWI-----------SEDISVIDRKTKLEIRKTDK-----IGLPR 257 (433)
T ss_dssp TTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETT-----------TTEEEEEETTTTEEEEECCC-----CSEEE
T ss_pred CCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecC-----------CCcEEEEECCCCcEEEEecC-----CCCce
Confidence 98865432211 011111233333 3457777652 24688999987765443211 11122
Q ss_pred eEEee-CCEEEEEecCCCCCcc--cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCc
Q 010011 195 TCSSW-KNKIIVIGGEDGHDYY--LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDD 269 (520)
Q Consensus 195 ~~~~~-~~~lyv~GG~~~~~~~--~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~d 269 (520)
.++.. +++.+++++....... -..+.+||+.+.+...... .+. .-..++.. ++.+|+.++.. +.
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---~~~--~~~~~~~~~~g~~l~~~~~~~------~~ 326 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---PPG--NKRHIVSGNTENKIYVSDMCC------SK 326 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---EEE--CEEEEEECSSTTEEEEEETTT------TE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---CCC--CcceEEECCCCCEEEEEecCC------CE
Confidence 23322 4544444443222111 2468899998876544321 111 11122222 34677776543 35
Q ss_pred EEEEecCCCcEEE
Q 010011 270 LYMIDVDSGLWTK 282 (520)
Q Consensus 270 v~~yd~~~~~W~~ 282 (520)
+.+||+.+.+-..
T Consensus 327 v~v~d~~~~~~~~ 339 (433)
T 3bws_A 327 IEVYDLKEKKVQK 339 (433)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCcEEE
Confidence 8999998775443
No 57
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.11 Score=57.50 Aligned_cols=191 Identities=9% Similarity=0.026 Sum_probs=94.7
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--C--CEEEEEcCCCCCCCCCcEEEEEC
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G--ENLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
+++ +++.||.+ ..+.+||..+.++..+... ......-.++.+ + +.+++.|+.+ ..+.+||+
T Consensus 20 dg~-~latg~~d------g~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~ 84 (753)
T 3jro_A 20 YGK-RLATCSSD------KTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKE 84 (753)
T ss_dssp SSC-CEEEEETT------TEEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEE
T ss_pred CCC-eEEEEECC------CcEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEEC
Confidence 344 55566542 4588888887777765421 111122222333 2 5677777764 35888999
Q ss_pred CCCeEEeecccCCCCCCCCCceEEEE--C--CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcc
Q 010011 118 SSHTWISPSVRGEGPEAREGHSAALV--G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~ 193 (520)
.+..|..+.... .......++.. + +.+++.|+. ...+.+||+.+..-.........+. .-
T Consensus 85 ~~~~~~~~~~~~---~h~~~V~~v~~sp~~~~~~l~sgs~-----------dg~I~vwdl~~~~~~~~~~~~~~~~--~v 148 (753)
T 3jro_A 85 ENGRWSQIAVHA---VHSASVNSVQWAPHEYGPLLLVASS-----------DGKVSVVEFKENGTTSPIIIDAHAI--GV 148 (753)
T ss_dssp ETTEEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEET-----------TSEEEEEECCSSSCCCCEEEECCSS--CE
T ss_pred CCCccccccccc---CCCCCeEEEEECCCCCCCEEEEEeC-----------CCcEEEEEeecCCCcceeEeecCCC--ce
Confidence 998876554321 11112222222 2 567777773 2356777776542110000000010 11
Q ss_pred eeEEee--------------CCEEEEEecCCCCCcccCceEEEECCCC--cEEEeeCCCCCCCCCce-eEEEEE-C---C
Q 010011 194 HTCSSW--------------KNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAG-HSTVAF-G---K 252 (520)
Q Consensus 194 h~~~~~--------------~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~~~~~~~~p~~R~~-hs~~~~-~---~ 252 (520)
.++... ++.+++.|+.++ .+..||..+. .+..+.. ....... .+++.. + +
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTS------CEEEEEEETTTTEEEEEEE---ECCCSSCEEEEEECCCCSSS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCC------eEEEEeccCCcccceeeee---ecCCCCcEEEEEeccCCCCC
Confidence 111111 356777777653 3677776543 3444432 1111111 222222 3 6
Q ss_pred EEEEEecccCCCCccCcEEEEecCCC
Q 010011 253 NLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 253 ~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
++++.||.++ .+.+||+.+.
T Consensus 220 ~~l~s~s~Dg------~I~iwd~~~~ 239 (753)
T 3jro_A 220 SYLASVSQDR------TCIIWTQDNE 239 (753)
T ss_dssp EEEEEEESSS------CEEEEEESSS
T ss_pred CEEEEEecCC------EEEEecCCCC
Confidence 7888888643 3888888775
No 58
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.95 E-value=0.31 Score=47.11 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=77.8
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
..++.+|+.++. .+.++++|+.+++....-. .+....-+.++.. ++.+|+.+.. ...+++||+.
T Consensus 8 ~~~~~~~v~~~~------~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~ 73 (349)
T 1jmx_B 8 KAGHEYMIVTNY------PNNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLD 73 (349)
T ss_dssp CTTCEEEEEEET------TTEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETT
T ss_pred cCCCEEEEEeCC------CCeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCC
Confidence 345667777653 2569999999887654221 1110012233332 3457877642 2469999999
Q ss_pred CCeEEeecccCCCCC--CCCCceEEEE-CC-EEEEEeCCCCCCCCCCcce---eceeEEEEcCcceEEEcccCCCCCCCC
Q 010011 119 SHTWISPSVRGEGPE--AREGHSAALV-GK-RLFIFGGCGKSSNTNDEVY---YNDLYILNTETFVWKRATTSGNPPSAR 191 (520)
Q Consensus 119 t~~W~~~~~~g~~p~--~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~---~~~v~~~d~~t~~W~~v~~~~~~p~~r 191 (520)
+.+....-..+..+. ...-+.++.. ++ .+|+.+.-.. .....+ .+.++++|+.+.+-.+.......+ +
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~ 148 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ---RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--R 148 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEE---ECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--S
T ss_pred CCcEEEEEEcccccccccccccceEECCCCCEEEEEccccc---ccccccccCCCeEEEEECCCccccceeeeccCC--C
Confidence 887643221111110 1112233333 33 5555442000 000011 257899998774321110000111 1
Q ss_pred cceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEE
Q 010011 192 DSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (520)
Q Consensus 192 ~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~ 231 (520)
...+++. .++++|+.++ +++++|+.+.+...
T Consensus 149 ~~~~~~~s~dg~l~~~~~---------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 149 QVYLMRAADDGSLYVAGP---------DIYKMDVKTGKYTV 180 (349)
T ss_dssp SCCCEEECTTSCEEEESS---------SEEEECTTTCCEEE
T ss_pred cccceeECCCCcEEEccC---------cEEEEeCCCCceec
Confidence 2222222 3556776422 38888888776544
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.87 E-value=1.2 Score=43.16 Aligned_cols=70 Identities=16% Similarity=-0.023 Sum_probs=38.4
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCC--
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS-- 277 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~-- 277 (520)
++.+++.|+.+ ..+..||+.+.+-...-. .........+..-++++++.| .. +.+.+||+.+
T Consensus 213 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~d------~~i~i~~~~~~~ 276 (372)
T 1k8k_C 213 NGSRVAWVSHD------STVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAG-HD------CFPVLFTYDSAA 276 (372)
T ss_dssp SSSEEEEEETT------TEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEE-TT------SSCEEEEEETTT
T ss_pred CCCEEEEEeCC------CEEEEEECCCCceeEEEc---cCCCCeEEEEEecCCCEEEEE-eC------CeEEEEEccCcC
Confidence 55677777644 348889987665332221 111111222233456665555 32 2377888888
Q ss_pred CcEEEeee
Q 010011 278 GLWTKVIT 285 (520)
Q Consensus 278 ~~W~~l~~ 285 (520)
+.|..+..
T Consensus 277 ~~~~~~~~ 284 (372)
T 1k8k_C 277 GKLSFGGR 284 (372)
T ss_dssp TEEEECCC
T ss_pred ceEEEeec
Confidence 88877643
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.4 Score=47.53 Aligned_cols=179 Identities=10% Similarity=0.013 Sum_probs=84.0
Q ss_pred CeEEEEECCCCeEEeeeccCCCC-----------CCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeeccc
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPP-----------TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVR 128 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P-----------~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~ 128 (520)
..+.+||..+.+....-.....+ ....-.++....+..++.|+.+ ..+.+||+.+.+-...-
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~~~d~~~~~~~~~~-- 243 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----GAIFVYQITEKTPTGKL-- 243 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG-----GCEEEEETTCSSCSEEE--
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----CeEEEEEcCCCceeeee--
Confidence 35788898877654422111111 0000222333333446666643 46889998875421111
Q ss_pred CCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEE
Q 010011 129 GEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVI 206 (520)
Q Consensus 129 g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~ 206 (520)
... ...-.+++.. ++.+++.|+. ...+.+||+.+.+....-. .....-.++... ++ +++.
T Consensus 244 -~~~-~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 244 -IGH-HGPISVLEFNDTNKLLLSASD-----------DGTLRIWHGGNGNSQNCFY----GHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp -CCC-SSCEEEEEEETTTTEEEEEET-----------TSCEEEECSSSBSCSEEEC----CCSSCEEEEEEETTT-EEEE
T ss_pred -ccC-CCceEEEEECCCCCEEEEEcC-----------CCEEEEEECCCCccceEec----CCCccEEEEEECCCC-EEEE
Confidence 000 1111223333 4556666663 2347778876643221110 011112223333 45 6666
Q ss_pred ecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 207 GGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 207 GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
|+.+ ..+.+||+.+.+-..... .... .-.++... ++++++.|+.+ ..+.+||+.+..
T Consensus 306 ~~~d------~~i~i~d~~~~~~~~~~~---~~~~-~i~~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~ 363 (425)
T 1r5m_A 306 CSMD------GSVRLWSLKQNTLLALSI---VDGV-PIFAGRISQDGQKYAVAFMD------GQVNVYDLKKLN 363 (425)
T ss_dssp EETT------SEEEEEETTTTEEEEEEE---CTTC-CEEEEEECTTSSEEEEEETT------SCEEEEECHHHH
T ss_pred EeCC------CcEEEEECCCCcEeEecc---cCCc-cEEEEEEcCCCCEEEEEECC------CeEEEEECCCCc
Confidence 6654 358899988765433322 1111 11122222 45677777653 248889887655
No 61
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.63 E-value=1.6 Score=41.55 Aligned_cols=180 Identities=16% Similarity=0.147 Sum_probs=87.9
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
..+.+||..+.+-...- .+. ...-.++.+ ++.+++.|+.++ .+.+||+.+.+-...- +.....
T Consensus 87 ~~i~vwd~~~~~~~~~~-~~~----~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~-----~~~~~~ 151 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTL-KGH----SNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVKTGKCLKTL-----PAHSDP 151 (312)
T ss_dssp SEEEEEETTTCCEEEEE-ECC----SSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCCEEEEE-----CCCSSC
T ss_pred CEEEEEECCCCcEEEEE-cCC----CCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCEEEEEe-----cCCCCc
Confidence 45788888876543311 111 111112222 445667776543 5888998876543211 111111
Q ss_pred ceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcc
Q 010011 138 HSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYY 215 (520)
Q Consensus 138 hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~ 215 (520)
...+.. ++.+++.|+. ...+.+||+.+.+....-.. .............++..++.|+.+
T Consensus 152 v~~~~~~~~~~~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d----- 213 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSY-----------DGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLD----- 213 (312)
T ss_dssp EEEEEECTTSSEEEEEET-----------TSCEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCC-----
Confidence 122222 4567777773 23577888877654322111 011111111122256667777654
Q ss_pred cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcEEEEecCCCcE
Q 010011 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 216 ~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
+.+..||..+.+-...-. +............. .++.+++.|+.+. .+.+||+.+..-
T Consensus 214 -~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg------~i~vwd~~~~~~ 271 (312)
T 4ery_A 214 -NTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDN------LVYIWNLQTKEI 271 (312)
T ss_dssp -TEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTTS------CEEEEETTTCCE
T ss_pred -CeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCCC------EEEEEECCCchh
Confidence 348889988765433221 10111111112222 3566777776542 489999988753
No 62
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.62 E-value=0.4 Score=53.09 Aligned_cols=183 Identities=10% Similarity=0.020 Sum_probs=101.4
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCC-CCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
.-+++||+.+++|.........+.. ..-.+++.. ++.|++-. . -.-+++||+.+.+++.......++....
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-----~~Gl~~~~~~~~~~~~~~~~~~l~~~~i- 541 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-F-----GGGVGIYTPDMQLVRKFNQYEGFCSNTI- 541 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-S-----SSCEEEECTTCCEEEEECTTTTCSCSCE-
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-c-----CCCEEEEeCCCCeEEEccCCCCCCCCee-
Confidence 3488999999888775421111111 111222222 45677643 1 1348999999999987653222322111
Q ss_pred ceEEEE-CCEEEEEeCCCCCCCCCCcceecee-EEEEcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCc
Q 010011 138 HSAALV-GKRLFIFGGCGKSSNTNDEVYYNDL-YILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDY 214 (520)
Q Consensus 138 hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v-~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~ 214 (520)
.+++.. ++.|++-.. +.+ ++||+.+.+++.......+|.... .+++.. ++.|++.+.
T Consensus 542 ~~i~~d~~g~lWi~T~-------------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~------ 601 (781)
T 3v9f_A 542 NQIYRSSKGQMWLATG-------------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN------ 601 (781)
T ss_dssp EEEEECTTSCEEEEET-------------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS------
T ss_pred EEEEECCCCCEEEEEC-------------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC------
Confidence 122221 456776422 346 888998888877654333443332 333333 577777642
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCcee-EEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGH-STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~h-s~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
+.+.+||+++.+++......-++...+.. +++...+..+.|||.. .+..||++..
T Consensus 602 --~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~-------Gl~~f~p~~~ 657 (781)
T 3v9f_A 602 --TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSIN-------GLCFFNPDIA 657 (781)
T ss_dssp --SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETT-------EEEEECSCCG
T ss_pred --CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCC-------ceEEEChhhc
Confidence 34889999999998876533244443332 3333334445557653 3788887653
No 63
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.59 E-value=1.6 Score=41.10 Aligned_cols=210 Identities=10% Similarity=0.096 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCC-CCcceEEEE--CCEEEEEcCCCCCCCCC
Q 010011 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTV--GENLYVFGGTDGMNPLR 110 (520)
Q Consensus 34 ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~--~~~iyv~GG~~~~~~~~ 110 (520)
...++++..++.||+.+.. ...+.+||+.......+...+..+.. ..-++++.. +++||+.+.. ...
T Consensus 31 ~p~~v~~~~~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~~~ 100 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTN------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTH 100 (286)
T ss_dssp CEEEEEECTTCCEEEEEGG------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGC
T ss_pred CCceEEECCCCCEEEEECC------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----CCC
Confidence 3445555444458876542 24588999885554444322211111 122344442 6789988632 124
Q ss_pred cEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCC
Q 010011 111 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (520)
Q Consensus 111 ~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~ 189 (520)
.+.+||.....-..... +....-+.++.. ++++|+.... ...+++||+.......+...+...
T Consensus 101 ~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~g~~~~~~~~~~~~~- 164 (286)
T 1q7f_A 101 QIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK-----------VMRVIIFDQNGNVLHKFGCSKHLE- 164 (286)
T ss_dssp EEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT-----------TTEEEEECTTSCEEEEEECTTTCS-
T ss_pred EEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC-----------CCEEEEEcCCCCEEEEeCCCCccC-
Confidence 68889965444333321 111112233333 4678887542 246888997765555443211111
Q ss_pred CCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCcc
Q 010011 190 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLY 267 (520)
Q Consensus 190 ~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~ 267 (520)
.-..++.. ++.+|+.... .+.+.+||+.......+...+....| ..++. -++++|+......
T Consensus 165 --~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g~~~~p---~~i~~d~~G~l~v~~~~~~----- 228 (286)
T 1q7f_A 165 --FPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGITNYP---IGVGINSNGEILIADNHNN----- 228 (286)
T ss_dssp --SEEEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTTSCSE---EEEEECTTCCEEEEECSSS-----
T ss_pred --CcEEEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCCccCCC---cEEEECCCCCEEEEeCCCC-----
Confidence 11233332 5788887542 34689999876655555432211111 22333 2467888764321
Q ss_pred CcEEEEecCCCcEEEeee
Q 010011 268 DDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 268 ~dv~~yd~~~~~W~~l~~ 285 (520)
..|.+||.+...-..+..
T Consensus 229 ~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 229 FNLTIFTQDGQLISALES 246 (286)
T ss_dssp CEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEcc
Confidence 158999977655444443
No 64
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.58 E-value=1.6 Score=42.46 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=86.1
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
++. ++.|+.+ ..+.+||+.+.+-...- .+. . ..-.+++.. ++.+++.|+. ...+.++|
T Consensus 154 ~~~-l~s~s~d-----~~i~~wd~~~~~~~~~~-~~h--~-~~v~~~~~~~~~~~l~sg~~-----------d~~v~~wd 212 (340)
T 1got_B 154 DNQ-IVTSSGD-----TTCALWDIETGQQTTTF-TGH--T-GDVMSLSLAPDTRLFVSGAC-----------DASAKLWD 212 (340)
T ss_dssp TTE-EEEEETT-----SCEEEEETTTTEEEEEE-CCC--S-SCEEEEEECTTSSEEEEEET-----------TSCEEEEE
T ss_pred CCc-EEEEECC-----CcEEEEECCCCcEEEEE-cCC--C-CceEEEEECCCCCEEEEEeC-----------CCcEEEEE
Confidence 455 4455443 35888999887654321 110 0 011122222 4567777774 23577788
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~- 250 (520)
+.+..-...-. .... .-.+++. .++.+++.|+.++ .+..||+.+.+-...-. .........++.+
T Consensus 213 ~~~~~~~~~~~---~h~~-~v~~v~~~p~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s 279 (340)
T 1got_B 213 VREGMCRQTFT---GHES-DINAICFFPNGNAFATGSDDA------TCRLFDLRADQELMTYS---HDNIICGITSVSFS 279 (340)
T ss_dssp TTTCSEEEEEC---CCSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC---CTTCCSCEEEEEEC
T ss_pred CCCCeeEEEEc---CCcC-CEEEEEEcCCCCEEEEEcCCC------cEEEEECCCCcEEEEEc---cCCcccceEEEEEC
Confidence 87654332210 0011 1112222 2667778887653 47888988765332221 1111112223322
Q ss_pred -CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 251 -GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 251 -~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
++++++.|+.+ ..+.+||+.+..-...-.... .......+ ..++.+++.||.+..
T Consensus 280 ~~g~~l~~g~~d------~~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~--s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 280 KSGRLLLAGYDD------FNCNVWDALKADRAGVLAGHD-----NRVSCLGV--TDDGMAVATGSWDSF 335 (340)
T ss_dssp TTSSEEEEEETT------SEEEEEETTTCCEEEEEECCS-----SCEEEEEE--CTTSSCEEEEETTSC
T ss_pred CCCCEEEEECCC------CeEEEEEcccCcEeeEeecCC-----CcEEEEEE--cCCCCEEEEEcCCcc
Confidence 45677777653 348899987754322211111 11111122 346667777876654
No 65
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.55 E-value=3.1 Score=45.45 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=71.0
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccCCC--CC---CCCCceEEEECCEEEEEeCCCCCCCCCC
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEG--PE---AREGHSAALVGKRLFIFGGCGKSSNTND 161 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~--p~---~r~~hs~~~~~~~lyv~GG~~~~~~~~~ 161 (520)
+-++.+++||+... ...++.+|..|.+ |+.-...... +. .....+.++.+++||+-..
T Consensus 65 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--------- 129 (689)
T 1yiq_A 65 TPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--------- 129 (689)
T ss_dssp CCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred cCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---------
Confidence 34567999999764 2469999998765 8753211000 00 0112234567888888543
Q ss_pred cceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEe
Q 010011 162 EVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 232 (520)
Q Consensus 162 ~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~ 232 (520)
...++.+|.++. .|+.-.............+.++.++.+|+-.+.. ....-..++.||.++.+ |+.-
T Consensus 130 ---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 ---DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGA-EFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEE
T ss_pred ---CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCC-ccCCCCEEEEEECCCCcEEEEec
Confidence 246899998765 5876542011111112223455688887743221 11134569999998776 8764
No 66
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.54 E-value=2 Score=41.98 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=38.4
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEE
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 123 (520)
..+++|.+.......-.+|.+|..++++..+... ... ...+-+..- +..||+.+..+.....-.+|.+|..+.+.+
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~--~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVA--NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECS--CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCC--CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3445677754332223456667788888876532 111 111222222 345777664321111123455566667776
Q ss_pred eec
Q 010011 124 SPS 126 (520)
Q Consensus 124 ~~~ 126 (520)
.+.
T Consensus 91 ~~~ 93 (361)
T 3scy_A 91 LLN 93 (361)
T ss_dssp EEE
T ss_pred Eee
Confidence 554
No 67
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.53 E-value=1.8 Score=41.36 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=94.5
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECC--CCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~ 112 (520)
.+..++++.||+.+..+ ..+.+|++. ++++..+... +....-..++.. +..||+.+.. ...+
T Consensus 43 ~~~spdg~~l~~~~~~~------~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~-----~~~i 108 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPE------FRVLAYRIAPDDGALTFAAES---ALPGSLTHISTDHQGQFVFVGSYN-----AGNV 108 (343)
T ss_dssp EEECTTSSEEEEEETTT------TEEEEEEECTTTCCEEEEEEE---ECSSCCSEEEECTTSSEEEEEETT-----TTEE
T ss_pred EEECCCCCEEEEeecCC------CeEEEEEecCCCCceeecccc---ccCCCCcEEEEcCCCCEEEEEecC-----CCeE
Confidence 44445677676654321 457777766 7777755321 111111222222 3346666532 2357
Q ss_pred EEEECCCCe-EEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCc-ceEEEcc--cCCC
Q 010011 113 HILDTSSHT-WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWKRAT--TSGN 186 (520)
Q Consensus 113 ~~yd~~t~~-W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t-~~W~~v~--~~~~ 186 (520)
.+||+.... ........... .-+.++.. ++.||+.+.. ...+.+||+.+ .+...+. .. .
T Consensus 109 ~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~-~ 173 (343)
T 1ri6_A 109 SVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLWVPALK-----------QDRICLFTVSDDGHLVAQDPAEV-T 173 (343)
T ss_dssp EEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEEEEEGG-----------GTEEEEEEECTTSCEEEEEEEEE-E
T ss_pred EEEECCCCccccccccccCCC---CceEEEECCCCCEEEEecCC-----------CCEEEEEEecCCCceeeeccccc-c
Confidence 888874322 22222111111 12233333 3457776521 24588888876 6554322 10 0
Q ss_pred CCCCCcceeEEee-CC-EEEEEecCCCCCcccCceEEEECC--CCcEEEeeCCCCCCCC----CceeEEEEE--CCEEEE
Q 010011 187 PPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVLSP----RAGHSTVAF--GKNLFV 256 (520)
Q Consensus 187 ~p~~r~~h~~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~~~~~~~~~p~~----R~~hs~~~~--~~~iyv 256 (520)
.+....-..++.. ++ .+|+.+..+ +.+.+||+. +.++..+......+.. .....++.. ++.+|+
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~------~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELN------SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 247 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTT------TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCC------CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence 1111111122222 34 466665332 357888874 4555433221112221 111123333 235666
Q ss_pred EecccCCCCccCcEEEEecC--CCcEEEeee
Q 010011 257 FGGFTDSQNLYDDLYMIDVD--SGLWTKVIT 285 (520)
Q Consensus 257 ~GG~~~~~~~~~dv~~yd~~--~~~W~~l~~ 285 (520)
.+... +.+.+||+. +..+..+..
T Consensus 248 ~~~~~------~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 248 CDRTA------SLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EETTT------TEEEEEEECTTSCCEEEEEE
T ss_pred EecCC------CEEEEEEEcCCCCceEEeee
Confidence 55322 358888887 556666643
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.48 E-value=1.9 Score=41.47 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=93.4
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~y 115 (520)
+.+..++.+++.|+.+ ..+.+||..+.+-...- .+ ....-.++.+ +++.++.|+.+ ..+.+|
T Consensus 38 ~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~-~~----h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw 101 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKD------SSASVWYSLNGERLGTL-DG----HTGTIWSIDVDCFTKYCVTGSAD-----YSIKLW 101 (369)
T ss_dssp EEECTTSCEEEEEESS------SCEEEEETTTCCEEEEE-CC----CSSCEEEEEECTTSSEEEEEETT-----TEEEEE
T ss_pred EEEcCCCCEEEEEeCC------CEEEEEeCCCchhhhhh-hh----cCCcEEEEEEcCCCCEEEEEeCC-----CeEEEE
Confidence 3343333455666532 35889998877654421 11 1111222222 45566666653 358899
Q ss_pred ECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc----eEEEcccCC----C
Q 010011 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF----VWKRATTSG----N 186 (520)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~----~W~~v~~~~----~ 186 (520)
|+.+.+....-. .+ ..-.++... ++..++.++.. .......+.+||+.+. .+....... .
T Consensus 102 d~~~~~~~~~~~---~~--~~v~~~~~~~~~~~l~~~~~~------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 102 DVSNGQCVATWK---SP--VPVKRVEFSPCGNYFLAILDN------VMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp ETTTCCEEEEEE---CS--SCEEEEEECTTSSEEEEEECC------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred ECCCCcEEEEee---cC--CCeEEEEEccCCCEEEEecCC------ccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 988876543221 11 111122222 34555555521 0111245666665432 122111000 0
Q ss_pred CCCCCcceeEEe--eCCEEEEEecCCCCCcccCceEEEECCC-CcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccC
Q 010011 187 PPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTD 262 (520)
Q Consensus 187 ~p~~r~~h~~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~ 262 (520)
.........++. .++++++.|+.+ ..+..||+.+ ..-..... .... .-.++... ++.+++.|+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~---~~~~-~v~~~~~~~~~~~l~~~~~d- 239 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYVDSID---LHEK-SISDMQFSPDLTYFITSSRD- 239 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEEEEEE---CCSS-CEEEEEECTTSSEEEEEETT-
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeEEEEe---cCCC-ceeEEEECCCCCEEEEecCC-
Confidence 000000122222 255666777654 3488999887 33222211 1111 11222222 45666777643
Q ss_pred CCCccCcEEEEecCCCcEEEee
Q 010011 263 SQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 263 ~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
..+.+||+.+.......
T Consensus 240 -----~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 240 -----TNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp -----SEEEEEETTTCCEEEEE
T ss_pred -----ceEEEEECCCCceeeee
Confidence 34899999887655443
No 69
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.45 E-value=3.7 Score=44.57 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=66.2
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCCC--------CCCcceEEEECCEEEEEcCCCCCCCCCcE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPT--------PRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~--------~R~~hs~~~~~~~iyv~GG~~~~~~~~~~ 112 (520)
++.||+... ...++.+|..++ .|+.-. ..+. .....+.+..+++||+... -..+
T Consensus 66 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l 129 (668)
T 1kv9_A 66 DGVIYTSMS-------WSRVIAVDAASGKELWRYDP---EVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRL 129 (668)
T ss_dssp TTEEEEEEG-------GGEEEEEETTTCCEEEEECC---CCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEE
T ss_pred CCEEEEECC-------CCeEEEEECCCChhceEECC---CCCccccccccccCCccceEEECCEEEEEcC------CCEE
Confidence 567887653 246899998776 588622 1111 0112344567889988642 2469
Q ss_pred EEEECCCCe--EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEc
Q 010011 113 HILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 181 (520)
Q Consensus 113 ~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v 181 (520)
+.+|..|.+ |+..... .........+.++.++.+|+-.+.. .......++.||..+. .|+.-
T Consensus 130 ~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~------~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGA------EYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCT------TTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCC------CcCCCCEEEEEECCCCcEEEEec
Confidence 999998865 8753311 1111112223455688887743211 1113457899999875 48764
No 70
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.42 E-value=2.1 Score=41.46 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=88.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
++.+++.|+.+ ..+.++|+.+.+-...-.. .+.. -.+++. .+++.++.|+. ...+.+||
T Consensus 91 ~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~--~~~~--~~~~~~spdg~~l~~g~~-----------dg~v~i~~ 150 (321)
T 3ow8_A 91 TLPIAASSSLD-----AHIRLWDLENGKQIKSIDA--GPVD--AWTLAFSPDSQYLATGTH-----------VGKVNIFG 150 (321)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC--CTTC--CCCEEECTTSSEEEEECT-----------TSEEEEEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCEEEEEeC--CCcc--EEEEEECCCCCEEEEEcC-----------CCcEEEEE
Confidence 34566666654 3588889888764332111 1111 112222 35567777773 24567788
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEEC
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG 251 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~ 251 (520)
+.+.+-...-. .....-.+++. .++++++.|+.++ .+..||+.+.+-...-. .........+..-+
T Consensus 151 ~~~~~~~~~~~----~~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd 217 (321)
T 3ow8_A 151 VESGKKEYSLD----TRGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHTLE---GHAMPIRSLTFSPD 217 (321)
T ss_dssp TTTCSEEEEEE----CSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSSCCCEEEECTT
T ss_pred cCCCceeEEec----CCCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEEEc---ccCCceeEEEEcCC
Confidence 76654322110 01111112222 2667778887653 48889998775433211 01111111122225
Q ss_pred CEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 252 ~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
+++++.|+.+. .+.+||+.+......... .........+ ..++.+++.|+.+..
T Consensus 218 ~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~--sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 218 SQLLVTASDDG------YIKIYDVQHANLAGTLSG-----HASWVLNVAF--CPDDTHFVSSSSDKS 271 (321)
T ss_dssp SCEEEEECTTS------CEEEEETTTCCEEEEECC-----CSSCEEEEEE--CTTSSEEEEEETTSC
T ss_pred CCEEEEEcCCC------eEEEEECCCcceeEEEcC-----CCCceEEEEE--CCCCCEEEEEeCCCc
Confidence 66777777543 389999987765433211 1111122222 235566777776654
No 71
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.32 E-value=4.2 Score=44.37 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCCC--------CCCcceEEEECCEEEEEcCCCCCCCCCcE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPT--------PRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~--------~R~~hs~~~~~~~iyv~GG~~~~~~~~~~ 112 (520)
++.||+... .+.++.+|..++ .|+.-. ..+. .....+.+..+++||+... -..+
T Consensus 70 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l 133 (689)
T 1yiq_A 70 DGVMYTTGP-------FSVVYALDARDGRLIWKYDP---QSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRL 133 (689)
T ss_dssp TTEEEEECG-------GGCEEEEETTTCCEEEEECC---CCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CCEEEEEcC-------CCeEEEEECCCCceeEEEcC---CCCccccccccccCCCCccEEECCEEEEEcc------CCEE
Confidence 567887643 245999998876 588621 1111 0112334667889988652 2469
Q ss_pred EEEECCCCe--EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce--EEEc
Q 010011 113 HILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRA 181 (520)
Q Consensus 113 ~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~--W~~v 181 (520)
+.+|..|.+ |+...............+.++.++.+|+-.+.. .......++.||..+.+ |+.-
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~------~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGA------EFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCT------TTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCC------ccCCCCEEEEEECCCCcEEEEec
Confidence 999998865 875431011010111223455688887733211 11124579999998764 8764
No 72
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.31 E-value=1.9 Score=41.30 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=94.1
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
.++.+|+.++. .+.+.+||+.+++.......+ .....++.- +..+|+.+..+ +.++++|+.+
T Consensus 8 ~~~~~~v~~~~------~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~ 71 (331)
T 3u4y_A 8 TSNFGIVVEQH------LRRISFFSTDTLEILNQITLG-----YDFVDTAITSDCSNVVVTSDFC-----QTLVQIETQL 71 (331)
T ss_dssp CCCEEEEEEGG------GTEEEEEETTTCCEEEEEECC-----CCEEEEEECSSSCEEEEEESTT-----CEEEEEECSS
T ss_pred CCCEEEEEecC------CCeEEEEeCcccceeeeEEcc-----CCcceEEEcCCCCEEEEEeCCC-----CeEEEEECCC
Confidence 35677877653 256899999998886643211 111222222 34588776532 3799999988
Q ss_pred CeE-EeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeE
Q 010011 120 HTW-ISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (520)
Q Consensus 120 ~~W-~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~ 196 (520)
.+. ......+ ..+ .++++.. ++.+| .+... .-...++++|+.+.+....-..+. ..+.+
T Consensus 72 ~~~~~~~~~~~--~~~--~~~~~~s~dg~~l~-~~~~~--------~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~ 133 (331)
T 3u4y_A 72 EPPKVVAIQEG--QSS--MADVDITPDDQFAV-TVTGL--------NHPFNMQSYSFLKNKFISTIPIPY-----DAVGI 133 (331)
T ss_dssp SSCEEEEEEEC--SSC--CCCEEECTTSSEEE-ECCCS--------SSSCEEEEEETTTTEEEEEEECCT-----TEEEE
T ss_pred CceeEEecccC--CCC--ccceEECCCCCEEE-EecCC--------CCcccEEEEECCCCCeEEEEECCC-----Cccce
Confidence 764 2221111 112 2213332 33566 33210 001278999998876554322111 12333
Q ss_pred Eee-CC-EEEEEecCCCCCcccCc-eEEEECCCCc-EEEeeCCCCCCCCCceeEEEEE-CC-EEEEEecccCCCCccCcE
Q 010011 197 SSW-KN-KIIVIGGEDGHDYYLSD-VHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDDL 270 (520)
Q Consensus 197 ~~~-~~-~lyv~GG~~~~~~~~~~-i~~yd~~t~~-W~~~~~~~~~p~~R~~hs~~~~-~~-~iyv~GG~~~~~~~~~dv 270 (520)
+.. ++ .+|+.+... +. +.+|+..... ...... ...+....-..++.. ++ .+|+.+.. .+.+
T Consensus 134 ~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~------~~~v 200 (331)
T 3u4y_A 134 AISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQ-EFISGGTRPFNITFTPDGNFAFVANLI------GNSI 200 (331)
T ss_dssp EECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEE-EEECSSSSEEEEEECTTSSEEEEEETT------TTEE
T ss_pred EECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCC-ccccCCCCccceEECCCCCEEEEEeCC------CCeE
Confidence 333 44 577765432 23 5666654321 111100 001111111233333 33 47766543 2459
Q ss_pred EEEecCCCcE
Q 010011 271 YMIDVDSGLW 280 (520)
Q Consensus 271 ~~yd~~~~~W 280 (520)
.+||+++.+.
T Consensus 201 ~v~d~~~~~~ 210 (331)
T 3u4y_A 201 GILETQNPEN 210 (331)
T ss_dssp EEEECSSTTS
T ss_pred EEEECCCCcc
Confidence 9999988775
No 73
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.30 E-value=2.5 Score=45.39 Aligned_cols=121 Identities=9% Similarity=0.092 Sum_probs=64.6
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEEC-CCC--eEEeeeccCC--CCCC---CCcceEEE--ECCE----EEEEcCCCCCCC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDT-VNQ--TWSQPVIKGS--PPTP---RDSHSCTT--VGEN----LYVFGGTDGMNP 108 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~-~t~--~W~~l~~~g~--~P~~---R~~hs~~~--~~~~----iyv~GG~~~~~~ 108 (520)
++.||+.+.+ .+.++.+|. .++ .|+.-..... .+.. ....+.+. .+++ ||+...
T Consensus 62 ~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------ 129 (599)
T 1w6s_A 62 DGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------ 129 (599)
T ss_dssp TTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------
T ss_pred CCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------
Confidence 5678887652 246899999 765 5887321100 0001 11223445 5777 887642
Q ss_pred CCcEEEEECCCCe--EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcc
Q 010011 109 LRDLHILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRAT 182 (520)
Q Consensus 109 ~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~ 182 (520)
-..++.+|..|.+ |+.... ..........+-++.++.+|+-.+.. +......++.||..+. .|+.-.
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v~~g~V~vg~~g~------e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYVVKDKVIIGSSGA------ELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEETTEEEECCBCG------GGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEEEeecCC-CCCccceeecCCEEECCEEEEEeccc------ccCCCCeEEEEECCCCcEEEEEcC
Confidence 2469999998865 875321 00000011223345678877643210 1112357899999865 487653
No 74
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.29 E-value=1.8 Score=40.00 Aligned_cols=188 Identities=11% Similarity=0.027 Sum_probs=95.5
Q ss_pred cCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEEEECCC-CeEEeecccCCCCC-CC
Q 010011 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDTSS-HTWISPSVRGEGPE-AR 135 (520)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~g~~p~-~r 135 (520)
...++++|+.+++...+... ...-.+++. -+++.+++++ ...++++|+.+ .+...+. .... ..
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~---~~~~~~~ 86 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT-----PELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVD---TGFATIC 86 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE-----SSCCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECC---CTTCCCB
T ss_pred ceeEEEEeCCCCceeeeccC-----CcceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEec---ccccccc
Confidence 46799999999887765421 111112222 2455555553 24799999988 7665443 1111 11
Q ss_pred CCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-CC-EEEEEecCCCCC
Q 010011 136 EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHD 213 (520)
Q Consensus 136 ~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~-~lyv~GG~~~~~ 213 (520)
........+++.+++++... .....+|.++..+.....+.... . ...+... ++ .|++.++.++.
T Consensus 87 ~~~~~~spdg~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~----~--~~~~~~spdg~~l~~~~~~~~~- 152 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVE-------FGKSAIYLLPSTGGTPRLMTKNL----P--SYWHGWSPDGKSFTYCGIRDQV- 152 (297)
T ss_dssp CSCCEECTTSSEEEEEECTT-------TSSCEEEEEETTCCCCEECCSSS----S--EEEEEECTTSSEEEEEEEETTE-
T ss_pred ccceEECCCCCEEEEEEeCC-------CCcceEEEEECCCCceEEeecCC----C--ccceEECCCCCEEEEEECCCCc-
Confidence 11222223455555555211 12467888988877655554211 1 2222222 44 45545543321
Q ss_pred cccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEee
Q 010011 214 YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 214 ~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
..+|.+|..+.....+... .......+..-+++.+++++..+. ...+|.+++.......+.
T Consensus 153 ---~~l~~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 153 ---FDIYSMDIDSGVETRLTHG----EGRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp ---EEEEEEETTTCCEEECCCS----SSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECC
T ss_pred ---eEEEEEECCCCcceEcccC----CCccccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEe
Confidence 3588888888777655431 111122222224444444432221 345888887777766654
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.27 E-value=1.1 Score=49.10 Aligned_cols=194 Identities=11% Similarity=0.018 Sum_probs=94.8
Q ss_pred EEEE-cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEE
Q 010011 37 CNAI-KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 37 ~~~v-~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~ 114 (520)
++++ +++. .++.|+.+ ..+.+||..+++....- .+ . ... -.+++. -+++.++.|+.+ ..+.+
T Consensus 18 ~i~~sp~~~-~la~~~~~------g~v~iwd~~~~~~~~~~-~~-~-~~~-v~~~~~s~~~~~l~~~~~d-----g~i~v 81 (814)
T 3mkq_A 18 GIDFHPTEP-WVLTTLYS------GRVEIWNYETQVEVRSI-QV-T-ETP-VRAGKFIARKNWIIVGSDD-----FRIRV 81 (814)
T ss_dssp EEEECSSSS-EEEEEETT------SEEEEEETTTTEEEEEE-EC-C-SSC-EEEEEEEGGGTEEEEEETT-----SEEEE
T ss_pred EEEECCCCC-EEEEEeCC------CEEEEEECCCCceEEEE-ec-C-CCc-EEEEEEeCCCCEEEEEeCC-----CeEEE
Confidence 3344 3444 55666532 46889999887655422 11 1 111 112222 245566666643 46899
Q ss_pred EECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc-eEEEcccCCCCCCCCc
Q 010011 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGNPPSARD 192 (520)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~-~W~~v~~~~~~p~~r~ 192 (520)
||..+.+....-. + .. ..-.+++.. ++..++.|+. ...+.++|+.+. .....-.. ....
T Consensus 82 w~~~~~~~~~~~~-~-~~--~~v~~~~~s~~~~~l~~~~~-----------dg~i~vw~~~~~~~~~~~~~~----~~~~ 142 (814)
T 3mkq_A 82 FNYNTGEKVVDFE-A-HP--DYIRSIAVHPTKPYVLSGSD-----------DLTVKLWNWENNWALEQTFEG----HEHF 142 (814)
T ss_dssp EETTTCCEEEEEE-C-CS--SCEEEEEECSSSSEEEEEET-----------TSEEEEEEGGGTSEEEEEEEC----CSSC
T ss_pred EECCCCcEEEEEe-c-CC--CCEEEEEEeCCCCEEEEEcC-----------CCEEEEEECCCCceEEEEEcC----CCCc
Confidence 9998877643211 1 01 111122222 4455566662 235778888765 33322110 1111
Q ss_pred ceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE---CCEEEEEecccCCCCcc
Q 010011 193 SHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLY 267 (520)
Q Consensus 193 ~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~~~~~ 267 (520)
-.+++.. ++.+++.|+.++ .+..||+.+..-..... .........+... ++..++.|+..
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------ 207 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDD------ 207 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEEE---CCCTTCCCEEEECCSTTCCEEEEECTT------
T ss_pred EEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEEe---cCCCCCEEEEEEEECCCCCEEEEEeCC------
Confidence 1222222 456777777543 48888886543222211 1111111222222 56677777753
Q ss_pred CcEEEEecCCCcE
Q 010011 268 DDLYMIDVDSGLW 280 (520)
Q Consensus 268 ~dv~~yd~~~~~W 280 (520)
..+.+||+.+..-
T Consensus 208 g~i~~~d~~~~~~ 220 (814)
T 3mkq_A 208 LTIKIWDYQTKSC 220 (814)
T ss_dssp SEEEEEETTTTEE
T ss_pred CEEEEEECCCCcE
Confidence 2489999887754
No 76
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.24 E-value=1 Score=43.10 Aligned_cols=139 Identities=9% Similarity=0.068 Sum_probs=65.8
Q ss_pred ceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCce
Q 010011 166 NDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 244 (520)
Q Consensus 166 ~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~ 244 (520)
..+.++|+.+.+...... .... .-.+++. .++.+++.|+.++ .+..||+.+.+-..... ....-
T Consensus 195 ~~i~i~d~~~~~~~~~~~---~h~~-~v~~~~~s~~~~~l~s~s~Dg------~i~iwd~~~~~~~~~~~-----~~~~v 259 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHI---GHTG-YLNTVTVSPDGSLCASGGKDG------QAMLWDLNEGKHLYTLD-----GGDII 259 (340)
T ss_dssp SCEEEEETTTTEEEEEEC---CCSS-CEEEEEECTTSSEEEEEETTC------EEEEEETTTTEEEEEEE-----CSSCE
T ss_pred CEEEEEECCCCceeeEec---CCCC-cEEEEEECCCCCEEEEEeCCC------eEEEEEeccCceeeeec-----CCceE
Confidence 346788887765443321 0111 1112222 2567788887653 47788887754332221 11112
Q ss_pred eEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCC----CCceeeeeeeeccccCCEEEEEcccCCCCC
Q 010011 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGP----SARFSVAGDCLDPLKGGVLVFIGGCNKSLE 320 (520)
Q Consensus 245 hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p----~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~ 320 (520)
.++....+..++.++.. ..+.+||+++..-.......... .......+..+ ..++.+++.||.+...
T Consensus 260 ~~~~~~~~~~~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~dg~~l~sgs~Dg~v- 330 (340)
T 4aow_A 260 NALCFSPNRYWLCAATG------PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW--SADGQTLFAGYTDNLV- 330 (340)
T ss_dssp EEEEECSSSSEEEEEET------TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE--CTTSSEEEEEETTSCE-
T ss_pred EeeecCCCCceeeccCC------CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE--CCCCCEEEEEeCCCEE-
Confidence 23334445555666643 34888998876533221111100 01111122222 3456677778876541
Q ss_pred ccCceEeeecc
Q 010011 321 ALDDMYYLYTG 331 (520)
Q Consensus 321 ~~~dv~~l~~~ 331 (520)
.+|.+.++
T Consensus 331 ---~iW~~~tG 338 (340)
T 4aow_A 331 ---RVWQVTIG 338 (340)
T ss_dssp ---EEEEEEC-
T ss_pred ---EEEeCCCc
Confidence 35555543
No 77
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.19 E-value=4 Score=45.01 Aligned_cols=185 Identities=13% Similarity=0.153 Sum_probs=101.4
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCce
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (520)
.+.+||..++++..+......+... -.+++. -++.|++... +.+++||..+.++..... ..+....-.+
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~~~~~~-i~~i~~d~~g~lwi~t~-------~gl~~~~~~~~~~~~~~~--~~~~~~~i~~ 177 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKNGKHLQ-VNGIEEISPEQLLISTP-------EGLIMFDIKESKFIDDSF--STAMHKTIAS 177 (795)
T ss_dssp CEEEEETTTTEEEEECCEETTEECC-CCEEEEEETTEEEEEET-------TEEEEEETTTTEEECSSS--CHHHHTCCEE
T ss_pred chheeCCCCCeEEeccccccCCCce-EEEEEECCCCCEEEEEC-------CceEEEECCCCEEEeccC--CCCCCcceEE
Confidence 4889999999888754211111001 122222 3678887542 469999999988876431 1111110112
Q ss_pred EEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccC
Q 010011 140 AAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLS 217 (520)
Q Consensus 140 ~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~ 217 (520)
+.. .++.|||... ...+++||+.+.++...... +....-.++.. .++.|+|-. . .+
T Consensus 178 i~~d~~g~lwigt~------------~~Gl~~~~~~~~~~~~~~~~---~~~~~i~~i~~d~~g~lwigt-~------~~ 235 (795)
T 4a2l_A 178 TLYRQGDQIYIGTS------------TDGLYTYSITQKTFEKVIPI---LGTKQIQAILQQSPTRIWVAT-E------GA 235 (795)
T ss_dssp EEEEETTEEEEEES------------SSCEEEEETTTCCEEECC-------CCCEEEEEEEETTEEEEEE-B------SS
T ss_pred EEECCCCCEEEEEC------------CCCEEEEeCCCCeEEEecCC---CCCCeeEEEEEcCCCCEEEEE-C------CC
Confidence 222 3678888321 13588999999888876421 11111222222 367777742 1 13
Q ss_pred ceEEEECCCCcEEEeeCCCCCCC---CCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 218 DVHILDTDTLTWKELNTSGMVLS---PRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 218 ~i~~yd~~t~~W~~~~~~~~~p~---~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
.+++||+.+.+++........+. ...-.++... ++.|+| |.. +.+++||+.+..+..+..
T Consensus 236 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-------~Gl~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 236 GLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTF-------NDLNIYHEGTDSFASYSS 299 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EES-------SCEEEEETTTTEEEEECC
T ss_pred CeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeC-------ChhheEcCCCCeEEEEec
Confidence 48899999998887754211111 1112223332 455665 332 138999999999988754
No 78
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.18 E-value=1.6 Score=41.61 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=61.2
Q ss_pred EEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEe-eeccCCCCC--CCCcceEEEE--CCEEEEEcCC---CCCC
Q 010011 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPT--PRDSHSCTTV--GENLYVFGGT---DGMN 107 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~--~R~~hs~~~~--~~~iyv~GG~---~~~~ 107 (520)
..+..++++.+|+.+.. ...++++|+.+++-.. +.. +. +. ...-+.++.. ++.||+.... ....
T Consensus 38 ~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 109 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDL-ST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109 (337)
T ss_dssp CEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEEC-CB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred ceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEc-CC-cccccccccceEECCCCCEEEEEeccccccccc
Confidence 34445567778877642 2469999998876543 221 11 00 0011223332 3467776411 0011
Q ss_pred ---CCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE
Q 010011 108 ---PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (520)
Q Consensus 108 ---~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~ 180 (520)
....+++||+.+.+....-..+. .-+.++.. ++ .||+.+ ..++++|+.+.+...
T Consensus 110 ~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~--------------~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 110 FEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGLG--------------RDLHVMDPEAGTLVE 168 (337)
T ss_dssp EEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEES--------------SSEEEEETTTTEEEE
T ss_pred ccccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEeC--------------CeEEEEECCCCcEee
Confidence 23679999999887643221111 12233332 33 466652 348899998776543
No 79
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.15 E-value=1 Score=43.54 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=97.5
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCe----EEeecccC--C--
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT----WISPSVRG--E-- 130 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~----W~~~~~~g--~-- 130 (520)
..+.+||+.+.+....-. .+ ..-.++... +++.++.++.+.......+.+||+.+.. +....... .
T Consensus 96 g~i~iwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWK---SP--VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp TEEEEEETTTCCEEEEEE---CS--SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred CeEEEEECCCCcEEEEee---cC--CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 458889988876554321 11 111122222 4455555554322223467777765432 22111000 0
Q ss_pred CCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCc-ce-EEEcccCCCCCCCCcceeEEe-eCCEEEE
Q 010011 131 GPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FV-WKRATTSGNPPSARDSHTCSS-WKNKIIV 205 (520)
Q Consensus 131 ~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t-~~-W~~v~~~~~~p~~r~~h~~~~-~~~~lyv 205 (520)
..........+.. ++++++.|+. ...+.+||+.+ .. ...+.. . ...-.+++. .++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~----~-~~~v~~~~~~~~~~~l~ 234 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHK-----------DGKISKYDVSNNYEYVDSIDL----H-EKSISDMQFSPDLTYFI 234 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEET-----------TSEEEEEETTTTTEEEEEEEC----C-SSCEEEEEECTTSSEEE
T ss_pred CCcCccceeEEEEcCCCCEEEEEcC-----------CCEEEEEECCCCcEeEEEEec----C-CCceeEEEECCCCCEEE
Confidence 0000001222222 3456666663 24588899876 33 222221 1 111122222 2566677
Q ss_pred EecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCc--------cCcEEEEecCC
Q 010011 206 IGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL--------YDDLYMIDVDS 277 (520)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~--------~~dv~~yd~~~ 277 (520)
.|+.+ ..+.+||..+.+....-. ........+..-+++.+++|+..+.... ...+.+||..+
T Consensus 235 ~~~~d------~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 235 TSSRD------TNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp EEETT------SEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT
T ss_pred EecCC------ceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence 77644 348889998766544332 1111111222234556666654432111 12578888877
Q ss_pred CcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 278 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 278 ~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
..-....... ........+ ..++.+++.||.+..
T Consensus 305 ~~~~~~~~~~-----~~~v~~~~~--s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 305 EEEIGRVQGH-----FGPLNTVAI--SPQGTSYASGGEDGF 338 (369)
T ss_dssp CCEEEEEECC-----SSCEEEEEE--CTTSSEEEEEETTSE
T ss_pred Ccchhheecc-----cCcEEEEEE--CCCCCEEEEEcCCCe
Confidence 6533322211 111122222 335667777776553
No 80
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.10 E-value=0.99 Score=47.81 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=120.0
Q ss_pred ceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEEC--CCCeEEeeeccCCCCCCCCcceEEEE-----CC-EEEEEcCCCC
Q 010011 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDT--VNQTWSQPVIKGSPPTPRDSHSCTTV-----GE-NLYVFGGTDG 105 (520)
Q Consensus 34 ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~--~t~~W~~l~~~g~~P~~R~~hs~~~~-----~~-~iyv~GG~~~ 105 (520)
-|..+..++++++|+.+. + +.+.+||+ .+.+-.. .++....-..++.- ++ .+|+..-.
T Consensus 181 ~~~v~~spdg~~l~v~~~-d------~~V~v~D~~~~t~~~~~-----~i~~g~~p~~va~sp~~~~dg~~l~v~~~~-- 246 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR-D------ARIDMIDLWAKEPTKVA-----EIKIGIEARSVESSKFKGYEDRYTIAGAYW-- 246 (543)
T ss_dssp EEEEEECTTSCEEEEEET-T------SEEEEEETTSSSCEEEE-----EEECCSEEEEEEECCSTTCTTTEEEEEEEE--
T ss_pred cceEEECCCCCEEEEECC-C------CeEEEEECcCCCCcEEE-----EEecCCCcceEEeCCCcCCCCCEEEEEEcc--
Confidence 465556677887877653 1 56899999 6655332 11111122233332 34 45554311
Q ss_pred CCCCCcEEEEECCCCeEEe-ecccCC-------CCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc
Q 010011 106 MNPLRDLHILDTSSHTWIS-PSVRGE-------GPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (520)
Q Consensus 106 ~~~~~~~~~yd~~t~~W~~-~~~~g~-------~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~ 176 (520)
-+.+.++|..+.+-.. ++..+. .|.+|-...+... ++.+|+-... ...++++|..+.
T Consensus 247 ---~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----------~g~i~vvd~~~~ 312 (543)
T 1nir_A 247 ---PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------TGKVLLVNYKDI 312 (543)
T ss_dssp ---SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------TTEEEEEECTTS
T ss_pred ---CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----------CCeEEEEEecCC
Confidence 2457888988766432 222110 0122222222222 3445554331 356788887653
Q ss_pred eE---EEcccCCCCCCCCcceeEEe-eCCE-EEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-
Q 010011 177 VW---KRATTSGNPPSARDSHTCSS-WKNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (520)
Q Consensus 177 ~W---~~v~~~~~~p~~r~~h~~~~-~~~~-lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~- 250 (520)
+- ..+. ..+.-+.++. -+++ +|+.+. ..+.+.++|.++.+-...-..+..|.+-.+.....-
T Consensus 313 ~~l~~~~i~------~~~~~~~~~~spdg~~l~va~~------~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~ 380 (543)
T 1nir_A 313 DNLTVTSIG------AAPFLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK 380 (543)
T ss_dssp SSCEEEEEE------CCSSCCCEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETT
T ss_pred CcceeEEec------cCcCccCceECCCCCEEEEEec------CCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCC
Confidence 21 1222 1222222332 2444 555432 234688899999876654433434444333333222
Q ss_pred CCEEEEEecccCCCCccCcEEEEecCCC-----cEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCce
Q 010011 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSG-----LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDM 325 (520)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~-----~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv 325 (520)
++.+|+.+...+ +.|-++|+.+. .|+.+.............. ....+..||+-.-.+.....-+.+
T Consensus 381 ~g~~~~s~~~~d-----~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~----~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 381 YGPVWSTSHLGD-----GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK----THPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp TEEEEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE----CCTTCCEEEECCTTCSSHHHHTCE
T ss_pred CccEEEeccCCC-----ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE----cCCCCCcEEEecCCCCCcccCceE
Confidence 356777765332 34888888762 3776655322111111111 124455666532112111123467
Q ss_pred Eeeeccccc
Q 010011 326 YYLYTGLVN 334 (520)
Q Consensus 326 ~~l~~~~~~ 334 (520)
.++++.+..
T Consensus 452 ~v~d~~~~~ 460 (543)
T 1nir_A 452 AVFDLKNLD 460 (543)
T ss_dssp EEEETTCTT
T ss_pred EEEECCCCC
Confidence 777776554
No 81
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.10 E-value=2.4 Score=40.45 Aligned_cols=196 Identities=10% Similarity=0.016 Sum_probs=96.7
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeE-EeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW-SQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W-~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~ 113 (520)
.+..++++.+|+.+..+ +.++++|+.+++. ......+..| .++++.. +..|| .+... .....++
T Consensus 45 ~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~-~~~~~--~~~~~i~ 111 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQSS----MADVDITPDDQFAV-TVTGL--NHPFNMQ 111 (331)
T ss_dssp EEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECSSC----CCCEEECTTSSEEE-ECCCS--SSSCEEE
T ss_pred EEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCCCC----ccceEECCCCCEEE-EecCC--CCcccEE
Confidence 33445666787766522 4799999988874 2221122211 2212222 44566 43221 1123799
Q ss_pred EEECCCCeEEeecccCCCCCCCCCceEEEE-CC-EEEEEeCCCCCCCCCCcceece-eEEEEcCcc-e-----EEEcccC
Q 010011 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYND-LYILNTETF-V-----WKRATTS 184 (520)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~-v~~~d~~t~-~-----W~~v~~~ 184 (520)
++|+.+.+....-..+. ..+.++.. ++ .+|+.+.. .+. +.+|++... . ...+.
T Consensus 112 v~d~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~-----------~~~~i~~~~~~~~g~~~~~~~~~~~-- 173 (331)
T 3u4y_A 112 SYSFLKNKFISTIPIPY-----DAVGIAISPNGNGLILIDRS-----------SANTVRRFKIDADGVLFDTGQEFIS-- 173 (331)
T ss_dssp EEETTTTEEEEEEECCT-----TEEEEEECTTSSCEEEEEET-----------TTTEEEEEEECTTCCEEEEEEEEEC--
T ss_pred EEECCCCCeEEEEECCC-----CccceEECCCCCEEEEEecC-----------CCceEEEEEECCCCcEeecCCcccc--
Confidence 99999887654321111 11344443 33 57776552 123 555554421 1 11111
Q ss_pred CCCCCCCcceeEEee-CC-EEEEEecCCCCCcccCceEEEECCCCcE---E-EeeCCCCCCCCCceeEEEEE-CC-EEEE
Q 010011 185 GNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTW---K-ELNTSGMVLSPRAGHSTVAF-GK-NLFV 256 (520)
Q Consensus 185 ~~~p~~r~~h~~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~W---~-~~~~~~~~p~~R~~hs~~~~-~~-~iyv 256 (520)
.......++.. ++ .+|+.+.. .+.+.+||+++.+. . .+.. + ..-..++.. ++ .+|+
T Consensus 174 ----~~~~~~~~~~spdg~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~-~-----~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 174 ----GGTRPFNITFTPDGNFAFVANLI------GNSIGILETQNPENITLLNAVGT-N-----NLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp ----SSSSEEEEEECTTSSEEEEEETT------TTEEEEEECSSTTSCEEEEEEEC-S-----SCCCCEEECTTSSEEEE
T ss_pred ----CCCCccceEECCCCCEEEEEeCC------CCeEEEEECCCCcccceeeeccC-C-----CCCceEEECCCCCEEEE
Confidence 11111233332 44 47776543 24588999987765 2 2222 1 111122322 33 4666
Q ss_pred EecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 257 FGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 257 ~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
.... .+.++++|+++.+...+..
T Consensus 238 ~~~~------~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 238 LTES------TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp ECSS------EEEEEEEETTTTEEEEEEE
T ss_pred EEcC------CCEEEEEECCCCceeeecc
Confidence 5442 2348999999988765543
No 82
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.03 E-value=3.1 Score=44.27 Aligned_cols=127 Identities=12% Similarity=0.123 Sum_probs=71.0
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEEC-CCCe--EEeecccCC--CCCC---CCCceEEEECCEEEEEeCCCCCCCC
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDT-SSHT--WISPSVRGE--GPEA---REGHSAALVGKRLFIFGGCGKSSNT 159 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~t~~--W~~~~~~g~--~p~~---r~~hs~~~~~~~lyv~GG~~~~~~~ 159 (520)
.+-++.++.||+.... ...++++|. .+.+ |+....... .+.. ....+.++.++++|+...
T Consensus 56 ~~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------- 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------- 123 (571)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred cccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------
Confidence 3445679999998752 246999999 7754 876321100 0001 112344567888888644
Q ss_pred CCcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEee
Q 010011 160 NDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (520)
Q Consensus 160 ~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~ 233 (520)
...++.+|..+. .|+.-... .........+.++.++.+|+-.+... ...-..++.||.++.+ |+.-.
T Consensus 124 -----dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 -----NGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp -----TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred -----CCEEEEEECCCCCEEEEecCCC-CCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEcc
Confidence 246899998765 58754311 00000112233456888876543211 1123569999998654 77543
No 83
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=94.98 E-value=5.1 Score=43.49 Aligned_cols=217 Identities=10% Similarity=-0.003 Sum_probs=108.5
Q ss_pred EEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCC-----------
Q 010011 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGM----------- 106 (520)
Q Consensus 39 ~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~----------- 106 (520)
..++|++|. ++...... ....++++|+.+++........ ... .+.+-. +++.++++..+..
T Consensus 132 ~SPDg~~la-~~~~~~G~-~~~~i~v~d~~tg~~~~~~~~~----~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 132 FSEDGEYFA-YGLSASGS-DWVTIKFMKVDGAKELPDVLER----VKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp ECTTSSEEE-EEEEETTC-SCEEEEEEETTTTEEEEEEEEE----ECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred ECCCCCEEE-EEEcCCCC-ceEEEEEEECCCCCCCcccccC----ccc-ceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 335666544 43321111 2247999999999887643211 111 122222 4443444333322
Q ss_pred CCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEE-ECCE-EEEEeCCCCCCCCCCcceeceeEEEEcCc------c--
Q 010011 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTET------F-- 176 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d~~t------~-- 176 (520)
.....++++++.+.+.....+......+.+...... -+++ |++..... ....++++++|+.+ .
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG-------CDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS-------SSSCCEEEEEEGGGSSSSSCSSC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc-------CCCccEEEEEECcccccccCCcc
Confidence 224569999998765321111001111222222222 2444 44443211 11246899999876 4
Q ss_pred eEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCC---cEEEeeCCCCCCCCCceeEEEEE-CC
Q 010011 177 VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLSPRAGHSTVAF-GK 252 (520)
Q Consensus 177 ~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~---~W~~~~~~~~~p~~R~~hs~~~~-~~ 252 (520)
.+..+... ...........++.||+.+..+. ....++.+|+.+. .|+.+.... ....-...... ++
T Consensus 278 ~~~~l~~~----~~~~~~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 278 KWVKLIDN----FEGEYDYVTNEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSN 347 (710)
T ss_dssp CCEEEECS----SSSCEEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTT
T ss_pred ceEEeeCC----CCcEEEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCC
Confidence 57777521 11111223334678888865432 2356999998875 588876421 11122233444 67
Q ss_pred EEEEEecccCCCCccCcEEEEecCCCc-EEEe
Q 010011 253 NLFVFGGFTDSQNLYDDLYMIDVDSGL-WTKV 283 (520)
Q Consensus 253 ~iyv~GG~~~~~~~~~dv~~yd~~~~~-W~~l 283 (520)
.+++...... ...|+++|+.++. ...+
T Consensus 348 ~lv~~~~~~g----~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 348 FLVLCYLHDV----KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEEEEEETT----EEEEEEEETTTCCEEEEE
T ss_pred EEEEEEEECC----EEEEEEEECCCCCEEEec
Confidence 7776665432 3458999986554 4444
No 84
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.98 E-value=1.9 Score=43.44 Aligned_cols=182 Identities=14% Similarity=0.204 Sum_probs=93.4
Q ss_pred EEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEee
Q 010011 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISP 125 (520)
Q Consensus 46 Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 125 (520)
+++.|+.+ ..+.+||..+++-...- . .....-.+....+..++.|+.+ ..+.+||..+..-...
T Consensus 185 ~l~sg~~d------g~i~vwd~~~~~~~~~~-~----~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~ 248 (435)
T 1p22_A 185 VIITGSSD------STVRVWDVNTGEMLNTL-I----HHCEAVLHLRFNNGMMVTCSKD-----RSIAVWDMASPTDITL 248 (435)
T ss_dssp EEEEEETT------SCEEEEESSSCCEEEEE-C----CCCSCEEEEECCTTEEEEEETT-----SCEEEEECSSSSCCEE
T ss_pred EEEEEcCC------CeEEEEECCCCcEEEEE-c----CCCCcEEEEEEcCCEEEEeeCC-----CcEEEEeCCCCCCcee
Confidence 55555532 45888998887654321 1 1112223334455566777654 3588888876542110
Q ss_pred cccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEE
Q 010011 126 SVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (520)
Q Consensus 126 ~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv 205 (520)
.. ..........++..++..++.|+. ...+.++|+.+.+-...-. . ......++..++.+++
T Consensus 249 ~~--~~~~~~~~v~~~~~~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~--~---~~~~v~~~~~~~~~l~ 310 (435)
T 1p22_A 249 RR--VLVGHRAAVNVVDFDDKYIVSASG-----------DRTIKVWNTSTCEFVRTLN--G---HKRGIACLQYRDRLVV 310 (435)
T ss_dssp EE--EECCCSSCEEEEEEETTEEEEEET-----------TSEEEEEETTTCCEEEEEE--C---CSSCEEEEEEETTEEE
T ss_pred ee--EecCCCCcEEEEEeCCCEEEEEeC-----------CCeEEEEECCcCcEEEEEc--C---CCCcEEEEEeCCCEEE
Confidence 00 001111122233335556666663 2457888887754332211 0 1111233444666777
Q ss_pred EecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 206 IGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
.|+.++ .+..||+.+.+-...-. .....-.++..++..++.|+.++ .+.+||+.+.
T Consensus 311 ~g~~dg------~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~sg~~dg------~i~vwd~~~~ 366 (435)
T 1p22_A 311 SGSSDN------TIRLWDIECGACLRVLE-----GHEELVRCIRFDNKRIVSGAYDG------KIKVWDLVAA 366 (435)
T ss_dssp EEETTS------CEEEEETTTCCEEEEEC-----CCSSCEEEEECCSSEEEEEETTS------CEEEEEHHHH
T ss_pred EEeCCC------eEEEEECCCCCEEEEEe-----CCcCcEEEEEecCCEEEEEeCCC------cEEEEECCCC
Confidence 777543 48889998765332211 11122234445777788887643 4888887654
No 85
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.97 E-value=4.1 Score=44.24 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=70.9
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccCCC-----CCCCCCceEEEECCEEEEEeCCCCCCCCC
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEG-----PEAREGHSAALVGKRLFIFGGCGKSSNTN 160 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~-----p~~r~~hs~~~~~~~lyv~GG~~~~~~~~ 160 (520)
.+-++.+++||+... ...++.+|..|.+ |+.-...... .......+.++.+++||+...
T Consensus 60 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------- 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------- 125 (668)
T ss_dssp CCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--------
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC--------
Confidence 344567999999864 2469999988765 8753211000 000112234556788887543
Q ss_pred CcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEe
Q 010011 161 DEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 232 (520)
Q Consensus 161 ~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~ 232 (520)
...++.+|.++. .|+.-... .........+.++.++.+|+-.+.. .......++.||.++.+ |+.-
T Consensus 126 ----dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 ----DGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGA-EYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ----TSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEE
T ss_pred ----CCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCC-CcCCCCEEEEEECCCCcEEEEec
Confidence 246899998765 58865421 1111112223445688877643321 11134569999998765 8764
No 86
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.93 E-value=0.6 Score=46.19 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=53.5
Q ss_pred CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee--CCEEEEEecCCCCCcccCceEE
Q 010011 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 221 (520)
Q Consensus 144 ~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~ 221 (520)
+++.++.|+.+ ..+.++|+.+.+....-. .... .-.+++.. ++.+++.||.++ .+.+
T Consensus 150 dg~~l~sgs~d-----------g~v~iwd~~~~~~~~~~~---~h~~-~v~~v~~s~~~~~~~~s~~~dg------~v~~ 208 (357)
T 4g56_B 150 DGTQAVSGGKD-----------FSVKVWDLSQKAVLKSYN---AHSS-EVNCVAACPGKDTIFLSCGEDG------RILL 208 (357)
T ss_dssp SSSEEEEEETT-----------SCEEEEETTTTEEEEEEC---CCSS-CEEEEEECTTCSSCEEEEETTS------CEEE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc---CCCC-CEEEEEEccCCCceeeeeccCC------ceEE
Confidence 45677777732 347788888765433211 0111 11122221 335677777543 3777
Q ss_pred EECCCCcEEEeeCCCCCCCCCceeEEEEE---CCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 222 LDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 222 yd~~t~~W~~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
||+.+.+-..... .........++.. ++.+++.|+.+. .|.+||+.+..
T Consensus 209 wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d~------~i~~wd~~~~~ 260 (357)
T 4g56_B 209 WDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFACGDETG------NVSLVNIKNPD 260 (357)
T ss_dssp CCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESSS------CEEEEESSCGG
T ss_pred EECCCCceeeeee---eccccccccchhhhhcccceEEEeeccc------ceeEEECCCCc
Confidence 8877654322111 1111111223332 356777777543 38899988764
No 87
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.90 E-value=1.5 Score=41.92 Aligned_cols=210 Identities=10% Similarity=0.012 Sum_probs=93.0
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe-EEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT-WSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~-W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~ 114 (520)
+..++++.||+.+.. ...+.+||...+. ...+... +....-++++.. +..||+.+.. ...+.+
T Consensus 90 ~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~ 155 (343)
T 1ri6_A 90 STDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVV---EGLDGCHSANISPDNRTLWVPALK-----QDRICL 155 (343)
T ss_dssp EECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEE---CCCTTBCCCEECTTSSEEEEEEGG-----GTEEEE
T ss_pred EEcCCCCEEEEEecC------CCeEEEEECCCCccccccccc---cCCCCceEEEECCCCCEEEEecCC-----CCEEEE
Confidence 334556666665431 1457788874322 2222111 111112223222 3467776522 246899
Q ss_pred EECCC-CeEEeec--ccCCCCCCCCCceEEEE-CC-EEEEEeCCCCCCCCCCcceeceeEEEEcC--cceEEEcccCCCC
Q 010011 115 LDTSS-HTWISPS--VRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTE--TFVWKRATTSGNP 187 (520)
Q Consensus 115 yd~~t-~~W~~~~--~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~--t~~W~~v~~~~~~ 187 (520)
||+.+ .+..... .. ..+....-..++.. ++ .+|+.+.. .+.+.+||+. +.++..+......
T Consensus 156 ~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~-----------~~~i~~~~~~~~~g~~~~~~~~~~~ 223 (343)
T 1ri6_A 156 FTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNEL-----------NSSVDVWELKDPHGNIECVQTLDMM 223 (343)
T ss_dssp EEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETT-----------TTEEEEEESSCTTSCCEEEEEEECS
T ss_pred EEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCC-----------CCEEEEEEecCCCCcEEEEeecccc
Confidence 99887 6664322 10 11111111123332 33 57776642 2457788874 3444322111112
Q ss_pred CCC----CcceeEEee--CCEEEEEecCCCCCcccCceEEEECC--CCcEEEeeCCCCCCCCCceeEEEEE-CC-EEEEE
Q 010011 188 PSA----RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVLSPRAGHSTVAF-GK-NLFVF 257 (520)
Q Consensus 188 p~~----r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~~~~~~~~~p~~R~~hs~~~~-~~-~iyv~ 257 (520)
+.. .....++.. ++.||+.+..+ +.+.+||+. +.+++.+.. .+....-..++.. ++ .+|+.
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~------~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRTA------SLITVFSVSEDGSVLSKEGF---QPTETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTT------TEEEEEEECTTSCCEEEEEE---EECSSSCCCEEECTTSSEEEEE
T ss_pred CccccccCCccceEECCCCCEEEEEecCC------CEEEEEEEcCCCCceEEeee---ecCCCccceEEECCCCCEEEEe
Confidence 211 111122222 34566655322 357788876 556666543 1111111122222 34 45554
Q ss_pred ecccCCCCccCcEEEEecCCCcEEEeeeC
Q 010011 258 GGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
++... .-.+|.+|.+++.++.+...
T Consensus 295 ~~~~~----~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 295 GQKSH----HISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp CTTTC----EEEEEEEETTTTEEEEEEEE
T ss_pred cCCCC----eEEEEEEcCCCceeeEcccc
Confidence 43221 11245557778888877653
No 88
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.89 E-value=3 Score=40.46 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=102.6
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCC
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSS 119 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t 119 (520)
+++ +++.|+.+ ..+.++|..+..-...- +.....-.++.+ ++.+++.||.+ ..+.+||+.+
T Consensus 66 d~~-~l~s~s~D------g~v~iWd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~ 128 (340)
T 1got_B 66 DSR-LLLSASQD------GKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGLD-----NICSIYNLKT 128 (340)
T ss_dssp TSS-EEEEEETT------TEEEEEETTTCCEEEEE-----ECSSSCEEEEEECTTSSEEEEEETT-----CEEEEEETTT
T ss_pred CCC-EEEEEeCC------CcEEEEECCCCCcceEe-----ecCCccEEEEEECCCCCEEEEEeCC-----CeEEEEECcc
Confidence 444 55566543 45888998776543311 111111112222 45667777754 3577888766
Q ss_pred Ce--EEeec-ccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCccee
Q 010011 120 HT--WISPS-VRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (520)
Q Consensus 120 ~~--W~~~~-~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~ 195 (520)
.. ..... ..+. .. .-.++.. .++. ++.|+. ...+.++|+.+.+....-. .... .-.+
T Consensus 129 ~~~~~~~~~~~~~h--~~-~v~~~~~~~~~~-l~s~s~-----------d~~i~~wd~~~~~~~~~~~---~h~~-~v~~ 189 (340)
T 1got_B 129 REGNVRVSRELAGH--TG-YLSCCRFLDDNQ-IVTSSG-----------DTTCALWDIETGQQTTTFT---GHTG-DVMS 189 (340)
T ss_dssp CSBSCEEEEEEECC--SS-CEEEEEEEETTE-EEEEET-----------TSCEEEEETTTTEEEEEEC---CCSS-CEEE
T ss_pred CCCcceeEEEecCC--Cc-cEEEEEECCCCc-EEEEEC-----------CCcEEEEECCCCcEEEEEc---CCCC-ceEE
Confidence 42 11111 0110 00 1111222 2455 444442 2457788887765433211 0011 1122
Q ss_pred EEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEE
Q 010011 196 CSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMI 273 (520)
Q Consensus 196 ~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~y 273 (520)
++. .++.+++.|+.++ .+..||+.+..-...-. ..... -.+++.. ++++++.|+.+. .+.+|
T Consensus 190 ~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~~---~h~~~-v~~v~~~p~~~~l~s~s~d~------~v~iw 253 (340)
T 1got_B 190 LSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTFT---GHESD-INAICFFPNGNAFATGSDDA------TCRLF 253 (340)
T ss_dssp EEECTTSSEEEEEETTS------CEEEEETTTCSEEEEEC---CCSSC-EEEEEECTTSSEEEEEETTS------CEEEE
T ss_pred EEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEEc---CCcCC-EEEEEEcCCCCEEEEEcCCC------cEEEE
Confidence 222 2567788887653 47888987765333211 01111 1122222 456777777543 38899
Q ss_pred ecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCC
Q 010011 274 DVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (520)
Q Consensus 274 d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (520)
|+.+..-...... +..........+ ..++.+++.|+.+.
T Consensus 254 d~~~~~~~~~~~~---~~~~~~v~~~~~--s~~g~~l~~g~~d~ 292 (340)
T 1got_B 254 DLRADQELMTYSH---DNIICGITSVSF--SKSGRLLLAGYDDF 292 (340)
T ss_dssp ETTTTEEEEEECC---TTCCSCEEEEEE--CTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcc---CCcccceEEEEE--CCCCCEEEEECCCC
Confidence 9887653322111 111112222233 34667777777654
No 89
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.80 E-value=2.2 Score=41.57 Aligned_cols=190 Identities=8% Similarity=0.090 Sum_probs=90.9
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
+++. +++.||.+ ..+.++|..++.|......... . ...-.++.+ +++.++.|+.++ .+.++|..
T Consensus 26 p~g~-~las~~~D------~~i~iw~~~~~~~~~~~~~~~~-h-~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~ 91 (345)
T 3fm0_A 26 PAGT-LLASCGGD------RRIRIWGTEGDSWICKSVLSEG-H-QRTVRKVAWSPCGNYLASASFDA-----TTCIWKKN 91 (345)
T ss_dssp TTSS-CEEEEETT------SCEEEEEEETTEEEEEEEECSS-C-SSCEEEEEECTTSSEEEEEETTS-----CEEEEEEC
T ss_pred CCCC-EEEEEcCC------CeEEEEEcCCCcceeeeeeccc-c-CCcEEEEEECCCCCEEEEEECCC-----cEEEEEcc
Confidence 4454 66677643 3477888888887643211000 0 111122222 456777777653 46777777
Q ss_pred CCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc-eEEEcccCCCCCCCCccee
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGNPPSARDSHT 195 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~-~W~~v~~~~~~p~~r~~h~ 195 (520)
+..+..+... ........++.. ++++++.|+.+ ..+.++|+.+. .+..+...... .. .-.+
T Consensus 92 ~~~~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~~h-~~-~v~~ 155 (345)
T 3fm0_A 92 QDDFECVTTL---EGHENEVKSVAWAPSGNLLATCSRD-----------KSVWVWEVDEEDEYECVSVLNSH-TQ-DVKH 155 (345)
T ss_dssp CC-EEEEEEE---CCCSSCEEEEEECTTSSEEEEEETT-----------SCEEEEEECTTSCEEEEEEECCC-CS-CEEE
T ss_pred CCCeEEEEEc---cCCCCCceEEEEeCCCCEEEEEECC-----------CeEEEEECCCCCCeEEEEEecCc-CC-CeEE
Confidence 7766543321 111111122222 45677777742 34667776543 23222211000 01 1111
Q ss_pred EEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEE
Q 010011 196 CSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYM 272 (520)
Q Consensus 196 ~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~ 272 (520)
++. .++.+++.|+.++ .+..||..+..|..+.. .......-..+.+ +++.++.|+.+. .+.+
T Consensus 156 ~~~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~---~~~h~~~v~~l~~sp~g~~l~s~s~D~------~v~i 220 (345)
T 3fm0_A 156 VVWHPSQELLASASYDD------TVKLYREEEDDWVCCAT---LEGHESTVWSLAFDPSGQRLASCSDDR------TVRI 220 (345)
T ss_dssp EEECSSSSCEEEEETTS------CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTS------CEEE
T ss_pred EEECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEE---ecCCCCceEEEEECCCCCEEEEEeCCC------eEEE
Confidence 221 2566777777653 37788888888875543 1111111122222 456777777543 2556
Q ss_pred Eec
Q 010011 273 IDV 275 (520)
Q Consensus 273 yd~ 275 (520)
||.
T Consensus 221 W~~ 223 (345)
T 3fm0_A 221 WRQ 223 (345)
T ss_dssp EEE
T ss_pred ecc
Confidence 654
No 90
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.77 E-value=2.3 Score=45.29 Aligned_cols=255 Identities=16% Similarity=0.114 Sum_probs=126.7
Q ss_pred cceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECC--CCeE-EeeeccCCCCCCCCcceEEE-----ECCEEEEEcCCC
Q 010011 33 WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTW-SQPVIKGSPPTPRDSHSCTT-----VGENLYVFGGTD 104 (520)
Q Consensus 33 ~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W-~~l~~~g~~P~~R~~hs~~~-----~~~~iyv~GG~~ 104 (520)
.-|..+..++++++|+.+. .+.+.+||+. +.+- .++. .|.-| | +.+.. -+..+|+..-
T Consensus 198 ~p~~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~~v~~i~-~G~~P--~--~ia~s~~~~pDGk~l~v~n~-- 263 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPTTVAEIK-IGSEA--R--SIETSKMEGWEDKYAIAGAY-- 263 (567)
T ss_dssp CEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCCEEEEEE-CCSEE--E--EEEECCSTTCTTTEEEEEEE--
T ss_pred CccceEECCCCCEEEEEcC-------CCeEEEEECCCCCCcEeEEEe-cCCCC--c--eeEEccccCCCCCEEEEEEc--
Confidence 3466666678888887642 2469999995 4432 2332 12211 1 22222 2345776642
Q ss_pred CCCCCCcEEEEECCCCeEEe-ecccCC-------CCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc
Q 010011 105 GMNPLRDLHILDTSSHTWIS-PSVRGE-------GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (520)
Q Consensus 105 ~~~~~~~~~~yd~~t~~W~~-~~~~g~-------~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~ 176 (520)
..+.+.++|..+.+-.+ +++.+. .|.+|........++..+++-= .....++..|..+.
T Consensus 264 ---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----------~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 264 ---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----------KETGKILLVDYTDL 330 (567)
T ss_dssp ---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----------TTTTEEEEEETTCS
T ss_pred ---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----------cCCCeEEEEecCCC
Confidence 12567888987765432 222110 1233333222222333333311 01356777887665
Q ss_pred eEEEcccCCCCCCCCcceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCC-CCCCCCCceeEEEEE--C
Q 010011 177 VWKRATTSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMVLSPRAGHSTVAF--G 251 (520)
Q Consensus 177 ~W~~v~~~~~~p~~r~~h~~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~-~~~p~~R~~hs~~~~--~ 251 (520)
..-.+. ..+..+..|....- + ..+|+... ..+.+.++|.++++-...-.. +..|.+..+... .. +
T Consensus 331 ~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~ 400 (567)
T 1qks_A 331 NNLKTT---EISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTF 400 (567)
T ss_dssp SEEEEE---EEECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTT
T ss_pred ccceee---eeeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCC
Confidence 443333 12334445544332 3 34444432 246699999999875544444 445655444443 33 2
Q ss_pred CEEEEEecccCCCCccCcEEEEecCCCc-----EEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceE
Q 010011 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGL-----WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMY 326 (520)
Q Consensus 252 ~~iyv~GG~~~~~~~~~dv~~yd~~~~~-----W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~ 326 (520)
+.+|+.+-..+ +.|.++|..+.. |+.+.............. ....+..+|+---.+......+.+.
T Consensus 401 g~v~~t~~~g~-----~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~----~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 401 GPVWATSHMGD-----DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK----THPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp EEEEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE----CCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred CcEEEeCCCCC-----CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE----eCCCCCeEEEecCCCCCcccCceEE
Confidence 56776653321 348888877632 877665322111111111 1245667887432222211245678
Q ss_pred eeecccc
Q 010011 327 YLYTGLV 333 (520)
Q Consensus 327 ~l~~~~~ 333 (520)
.+++...
T Consensus 472 v~d~~~~ 478 (567)
T 1qks_A 472 VFDIKAM 478 (567)
T ss_dssp EEEGGGC
T ss_pred EEECCcc
Confidence 8887655
No 91
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.65 E-value=2.9 Score=40.86 Aligned_cols=157 Identities=11% Similarity=0.015 Sum_probs=80.0
Q ss_pred CCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCE-EEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCC
Q 010011 109 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (520)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~ 186 (520)
...++++|+.+.+...+... .....+..... ++. |++... . ........++.+|+.+..+..+..
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~-~-----~~~~~~~~l~~~d~~~~~~~~l~~--- 233 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHE-G-----PHDLVDARMWLVNEDGSNVRKIKE--- 233 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEEC-S-----CSSSCSCCCEEEETTSCCCEESSC---
T ss_pred cceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEec-C-----CCCCCCceEEEEECCCCceeEeec---
Confidence 35789999998887655411 11112222222 244 444432 1 111123578999998887777652
Q ss_pred CCCCCcce-eEE-eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCC
Q 010011 187 PPSARDSH-TCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDS 263 (520)
Q Consensus 187 ~p~~r~~h-~~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~ 263 (520)
..+.... ... ..+++.+++....... ....++++|+.+.+...+.. .+. .. .+..- +++++++.+....
T Consensus 234 -~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~~---~~~--~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 234 -HAEGESCTHEFWIPDGSAMAYVSYFKGQ-TDRVIYKANPETLENEEVMV---MPP--CS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp -CCTTEEEEEEEECTTSSCEEEEEEETTT-CCEEEEEECTTTCCEEEEEE---CCS--EE-EEEECSSSSEEEEEECCC-
T ss_pred -cCCCccccceEECCCCCEEEEEecCCCC-ccceEEEEECCCCCeEEeee---CCC--CC-CCccCCCCceEEEecCCcc
Confidence 1111111 112 2245534443322111 12349999999888777654 221 11 22333 5666666542100
Q ss_pred ----------CCccCcEEEEecCCCcEEEeeeC
Q 010011 264 ----------QNLYDDLYMIDVDSGLWTKVITT 286 (520)
Q Consensus 264 ----------~~~~~dv~~yd~~~~~W~~l~~~ 286 (520)
......++++|+.++....+...
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred eeeccccccccCCCCcEEEEecccCceEEccCC
Confidence 01235699999998887766543
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.64 E-value=1.8 Score=41.97 Aligned_cols=183 Identities=10% Similarity=0.047 Sum_probs=91.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--C--CEEEEEeCCCCCCCCCCcceeceeE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--G--KRLFIFGGCGKSSNTNDEVYYNDLY 169 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~v~ 169 (520)
++++++.|+.+ ..+.+||+...++..+... ........++.. + +.+++.|+. ...+.
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~-----------dg~v~ 82 (379)
T 3jrp_A 22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSY-----------DGKVL 82 (379)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEET-----------TSCEE
T ss_pred CCCEEEEEECC-----CcEEEEecCCCcceeeeEe---cCCCCcEEEEEeCCCCCCCEEEEecc-----------CCEEE
Confidence 34566666654 3478888877776654421 111111222222 2 567777773 23578
Q ss_pred EEEcCcceEEEcccCCCCCCCCcceeEEee--C--CEEEEEecCCCCCcccCceEEEECCCCcE-EEeeCCCCCCCCCce
Q 010011 170 ILNTETFVWKRATTSGNPPSARDSHTCSSW--K--NKIIVIGGEDGHDYYLSDVHILDTDTLTW-KELNTSGMVLSPRAG 244 (520)
Q Consensus 170 ~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~--~--~~lyv~GG~~~~~~~~~~i~~yd~~t~~W-~~~~~~~~~p~~R~~ 244 (520)
++|+.+.+|..+...... .....++.+ + +.+++.|+.++ .+.+||+.+..- ..... ......-
T Consensus 83 iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~---~~~~~~v 150 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVH---SASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIII---DAHAIGV 150 (379)
T ss_dssp EEEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCTTSCCCEEEE---ECCTTCE
T ss_pred EEEcCCCceeEeeeecCC---CcceEEEEeCCCCCCCEEEEecCCC------cEEEEecCCCCceeeEEe---cCCCCce
Confidence 888888887666432111 111222222 3 56777777543 477888876521 11111 0011111
Q ss_pred eEEEEE--------------CCEEEEEecccCCCCccCcEEEEecCCCc--EEEeeeCCCCCCCceeeeeeeeccccC--
Q 010011 245 HSTVAF--------------GKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKVITTGEGPSARFSVAGDCLDPLKG-- 306 (520)
Q Consensus 245 hs~~~~--------------~~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~~l~~~~~~p~~r~~~~~~~~~~~~~-- 306 (520)
.++... ++.+++.|+.+. .+.+||+.+.. |..+..... ........++ ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~---h~~~v~~~~~--sp~~~ 219 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAW--SPTVL 219 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEEECC---CSSCEEEEEE--CCCCS
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEEEec---ccCcEeEEEE--CCCCC
Confidence 122222 366777777643 38888886553 554433211 1111222222 234
Q ss_pred -CEEEEEcccCCC
Q 010011 307 -GVLVFIGGCNKS 318 (520)
Q Consensus 307 -~~l~v~GG~~~~ 318 (520)
+.+++.|+.+..
T Consensus 220 ~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 220 LRSYLASVSQDRT 232 (379)
T ss_dssp SSEEEEEEETTSC
T ss_pred CCCeEEEEeCCCE
Confidence 788888887654
No 93
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=94.63 E-value=3.2 Score=39.48 Aligned_cols=213 Identities=14% Similarity=0.114 Sum_probs=103.1
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCe--EEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
.+++.|..+ ..++++|..+++ |+... +.....|.+.. -+++|++.+ .+.++.||+ +.+
T Consensus 6 ~~lv~~~~~------~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~ 66 (276)
T 3no2_A 6 HLLVGGSGW------NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSY-------SKGAKMITR-DGR 66 (276)
T ss_dssp EEEEECTTC------SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSC
T ss_pred cEEEeeCCC------CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCC
Confidence 466665432 568899987764 66521 11112333333 367788743 245899998 443
Q ss_pred --EEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc-eEEEcccCC-CCCCCCcceeE
Q 010011 122 --WISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSG-NPPSARDSHTC 196 (520)
Q Consensus 122 --W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~-~W~~v~~~~-~~p~~r~~h~~ 196 (520)
|+... +.....+++... ++++++...- ....++.+|++.. .|+...... ..+........
T Consensus 67 ~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~----------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 67 ELWNIAA-----PAGCEMQTARILPDGNALVAWCG----------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp EEEEEEC-----CTTCEEEEEEECTTSCEEEEEES----------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred EEEEEcC-----CCCccccccEECCCCCEEEEecC----------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCce
Confidence 65422 111122333333 4566655331 0235778887544 344321111 01111111223
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCC-cEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEec
Q 010011 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
...++.+++.... ...+.+||++.+ .|+.-.. ..+ ..+....++.++|.+... ..+..+|+
T Consensus 132 ~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~----~~~--~~~~~~~~g~~~v~~~~~------~~v~~~d~ 193 (276)
T 3no2_A 132 KNKKGNYLVPLFA------TSEVREIAPNGQLLNSVKLS----GTP--FSSAFLDNGDCLVACGDA------HCFVQLNL 193 (276)
T ss_dssp ECTTSCEEEEETT------TTEEEEECTTSCEEEEEECS----SCC--CEEEECTTSCEEEECBTT------SEEEEECT
T ss_pred ECCCCCEEEEecC------CCEEEEECCCCCEEEEEECC----CCc--cceeEcCCCCEEEEeCCC------CeEEEEeC
Confidence 3345666665432 245889998733 3554321 111 122333467777776542 34899999
Q ss_pred CCC--cEEEeeeCCCCCCCce-eeeeeeeccccCCEEEEEc
Q 010011 276 DSG--LWTKVITTGEGPSARF-SVAGDCLDPLKGGVLVFIG 313 (520)
Q Consensus 276 ~~~--~W~~l~~~~~~p~~r~-~~~~~~~~~~~~~~l~v~G 313 (520)
+++ .|+.-... .+..+. ...+..+ ..++.+|+..
T Consensus 194 ~tG~~~w~~~~~~--~~~~~l~~~~~~~~--~~~G~i~v~~ 230 (276)
T 3no2_A 194 ESNRIVRRVNAND--IEGVQLFFVAQLFP--LQNGGLYICN 230 (276)
T ss_dssp TTCCEEEEEEGGG--SBSCCCSEEEEEEE--CTTSCEEEEE
T ss_pred cCCcEEEEecCCC--CCCccccccccceE--cCCCCEEEEe
Confidence 966 46653221 111121 1222232 4577777765
No 94
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.42 E-value=2.5 Score=45.90 Aligned_cols=225 Identities=10% Similarity=-0.004 Sum_probs=106.9
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCC-C--------------CC------CcceEEEE
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPP-T--------------PR------DSHSCTTV 93 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P-~--------------~R------~~hs~~~~ 93 (520)
......++|++|+..+..+... ....++++|..+++...+....... . .| ....+..-
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDR-NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCT-TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCceEecCCCEEEEEeccCCCC-cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 3444456676555443312211 2357999999999877654211111 0 00 11111122
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCC---eEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSH---TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~---~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
+++.++++.. ..++++|+.+. .-..+.. . ..........-+++.++++. ...+++
T Consensus 119 Dg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~---~-~~~~~~~~~SPDG~~la~~~------------~~~i~~ 176 (741)
T 2ecf_A 119 DAQRLLFPLG------GELYLYDLKQEGKAAVRQLTH---G-EGFATDAKLSPKGGFVSFIR------------GRNLWV 176 (741)
T ss_dssp TSSEEEEEET------TEEEEEESSSCSTTSCCBCCC---S-SSCEEEEEECTTSSEEEEEE------------TTEEEE
T ss_pred CCCEEEEEeC------CcEEEEECCCCCcceEEEccc---C-CcccccccCCCCCCEEEEEe------------CCcEEE
Confidence 4444444432 68999999876 4433221 1 01111111222455555544 136999
Q ss_pred EEcCcceEEEcccCCCCCC-------------CCcceeEEeeCCEEEEEecCCCCC------------------------
Q 010011 171 LNTETFVWKRATTSGNPPS-------------ARDSHTCSSWKNKIIVIGGEDGHD------------------------ 213 (520)
Q Consensus 171 ~d~~t~~W~~v~~~~~~p~-------------~r~~h~~~~~~~~lyv~GG~~~~~------------------------ 213 (520)
+|+.+.+...+...+.... .+.......-+++.++++..+...
T Consensus 177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred EecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 9999888777653221100 000111222255544444332210
Q ss_pred ---cccCceEEEECCC-CcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 214 ---YYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 214 ---~~~~~i~~yd~~t-~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
.....++.+|+.+ .+-..+.... .........+. -+++.+++...... ....+|+++|+++.....+..
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGK-EQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCS-CSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCC-CcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEEEEE
Confidence 0122688889888 7765554310 01111112233 34444444433221 224679999999998777654
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.37 E-value=1.8 Score=43.48 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=47.9
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE-EE-CCEEEEEecccCCCCccCcEEEEecCC
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AF-GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~-~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
+..+++.||...+ ..|..||+.+.+-...... .. ...+++ .. ++.+++..|..+ +.|.+||..+
T Consensus 288 ~~~~la~~~gs~D----~~I~iwd~~t~~~~~~~~~---~~--~v~~~~~~~~~~~lv~~sg~~d-----~~I~iwd~~~ 353 (420)
T 4gga_A 288 QSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA---HS--QVCSILWSPHYKELISGHGFAQ-----NQLVIWKYPT 353 (420)
T ss_dssp CTTEEEEEECTTT----CEEEEEETTTTEEEEEEEC---SS--CEEEEEEETTTTEEEEEECTTT-----CCEEEEETTT
T ss_pred cccEEEEEeecCC----CEEEEEeCCccccceeecc---cc--ceeeeeecCCCCeEEEEEecCC-----CEEEEEECCC
Confidence 4455555443222 2478899988765443321 11 111222 22 345665556543 3489999887
Q ss_pred CcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 278 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 278 ~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
.+- +.... .... ...++++ ..++.+++.||.+..
T Consensus 354 ~~~--v~~l~-gH~~--~V~~l~~--spdg~~l~S~s~D~t 387 (420)
T 4gga_A 354 MAK--VAELK-GHTS--RVLSLTM--SPDGATVASAAADET 387 (420)
T ss_dssp CCE--EEEEC-CCSS--CEEEEEE--CTTSSCEEEEETTTE
T ss_pred CcE--EEEEc-CCCC--CEEEEEE--cCCCCEEEEEecCCe
Confidence 643 32221 1111 1222222 346667778887654
No 96
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.32 E-value=3.1 Score=41.72 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=74.0
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~ 114 (520)
++.+.....+++.|+.+ ..+.+||..+++....- .+. ...-.++.+ ++++++.||.++ .+.+
T Consensus 113 ~~~~~p~~~~l~s~s~D------g~i~vwd~~~~~~~~~l-~~h----~~~V~~v~~~~~~~~l~sgs~D~-----~i~i 176 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASED------ATIKVWDYETGDFERTL-KGH----TDSVQDISFDHSGKLLASCSADM-----TIKL 176 (410)
T ss_dssp EEEECSSSSEEEEEESS------SCEEEEETTTCCCCEEE-CCC----SSCEEEEEECTTSSEEEEEETTS-----CCCE
T ss_pred EEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-ecc----CCcEEEEEEcCCCCEEEEEeCCC-----eEEE
Confidence 34443333466666643 35888998877544311 111 111122222 456777787654 3567
Q ss_pred EECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCc
Q 010011 115 LDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (520)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~ 192 (520)
||+.+..-... +......-.++.. ++..++.|+. ...+.++|+.+......-. + .. .
T Consensus 177 wd~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~-----------D~~i~~wd~~~~~~~~~~~-~--h~--~ 235 (410)
T 1vyh_C 177 WDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASR-----------DKTIKMWEVQTGYCVKTFT-G--HR--E 235 (410)
T ss_dssp EETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEET-----------TSEEEEEETTTCCEEEEEE-C--CS--S
T ss_pred EeCCCCceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEe-C--CC--c
Confidence 78766543221 1111111122222 4556667773 2457788887665322210 0 00 1
Q ss_pred ceeEEe--eCCEEEEEecCCCCCcccCceEEEECCCCcEE
Q 010011 193 SHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (520)
Q Consensus 193 ~h~~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~ 230 (520)
...++. .++.+++.|+.++ .+..||+.+....
T Consensus 236 ~v~~~~~~~~g~~l~s~s~D~------~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIASCSNDQ------TVRVWVVATKECK 269 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEE
T ss_pred cEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcee
Confidence 111222 2567777777653 3777888776544
No 97
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.23 E-value=0.69 Score=45.35 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=90.5
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
++++++.||.+ ..+.++|..+..|........ .......++.. ++++++.|+.+ ..+.++
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~s~D-----------~~v~iw 88 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSE--GHQRTVRKVAWSPCGNYLASASFD-----------ATTCIW 88 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEECS--SCSSCEEEEEECTTSSEEEEEETT-----------SCEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeecc--ccCCcEEEEEECCCCCEEEEEECC-----------CcEEEE
Confidence 45667777654 347788888888754321100 00111122222 45677777742 335566
Q ss_pred EcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCC-cEEEeeCCCCCCCCCceeEEEE
Q 010011 172 NTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVA 249 (520)
Q Consensus 172 d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~~~~~~~~p~~R~~hs~~~ 249 (520)
|..+..++.+...... ...-.+++. .++++++.|+.++ .+.++|+.+. .+..+.. ..........+.
T Consensus 89 ~~~~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~ 157 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSV---LNSHTQDVKHVV 157 (345)
T ss_dssp EECCC-EEEEEEECCC--SSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEE---ECCCCSCEEEEE
T ss_pred EccCCCeEEEEEccCC--CCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEE---ecCcCCCeEEEE
Confidence 6666655443311010 111112222 2567778887653 3777887654 2333322 111111112222
Q ss_pred --ECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 250 --FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 250 --~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
-++++++.|+.+. .+.+||.++..|..+....... .......+ ..++.+++.|+.+..
T Consensus 158 ~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~h~---~~v~~l~~--sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 158 WHPSQELLASASYDD------TVKLYREEEDDWVCCATLEGHE---STVWSLAF--DPSGQRLASCSDDRT 217 (345)
T ss_dssp ECSSSSCEEEEETTS------CEEEEEEETTEEEEEEEECCCS---SCEEEEEE--CTTSSEEEEEETTSC
T ss_pred ECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEecCCC---CceEEEEE--CCCCCEEEEEeCCCe
Confidence 2456777777543 3889999998887654431111 11122222 235667777876654
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.02 E-value=0.29 Score=48.16 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=66.0
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
++++ +++.|+.+ ..+.+||..++.|..+. .+......-.++.+ ++++++.|+.+ ..+.+||+.
T Consensus 21 ~~g~-~l~~~~~d------~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~ 85 (377)
T 3dwl_C 21 SQRT-EFVTTTAT------NQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKR 85 (377)
T ss_dssp SSSS-EEECCCSS------SCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC---
T ss_pred CCCC-EEEEecCC------CEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcC
Confidence 3454 55666643 34778888888887654 22211122222223 45667777654 358888887
Q ss_pred CCe-EEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce-EEEcccCCCCCCCCcce
Q 010011 119 SHT-WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATTSGNPPSARDSH 194 (520)
Q Consensus 119 t~~-W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~-W~~v~~~~~~p~~r~~h 194 (520)
+.. |...... .........+.. ++++++.|+. ...+.++|+.+.+ |..+... ..+....-.
T Consensus 86 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~-~~~h~~~v~ 150 (377)
T 3dwl_C 86 PDGTWKQTLVL---LRLNRAATFVRWSPNEDKFAVGSG-----------ARVISVCYFEQENDWWVSKHL-KRPLRSTIL 150 (377)
T ss_dssp ---CCCCEEEC---CCCSSCEEEEECCTTSSCCEEEES-----------SSCEEECCC-----CCCCEEE-CSSCCSCEE
T ss_pred CCCceeeeeEe---cccCCceEEEEECCCCCEEEEEec-----------CCeEEEEEECCcccceeeeEe-ecccCCCeE
Confidence 766 4332211 111111122222 4556666663 1346667776543 2212111 011111112
Q ss_pred eEEee-CCEEEEEecCCCCCcccCceEEEECCC
Q 010011 195 TCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDT 226 (520)
Q Consensus 195 ~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t 226 (520)
+++.. ++++++.|+.++ .+..||+.+
T Consensus 151 ~~~~~~~~~~l~~~~~d~------~i~iwd~~~ 177 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADR------KAYVLSAYV 177 (377)
T ss_dssp EEEECTTSSEEEEEESSS------CEEEEEECC
T ss_pred EEEEcCCCCEEEEEeCCC------EEEEEEEEe
Confidence 22222 567777877653 377777654
No 99
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=93.96 E-value=3.9 Score=44.31 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=99.6
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCC--------CCCCcEEEEECCCCeEE--eecccC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM--------NPLRDLHILDTSSHTWI--SPSVRG 129 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~~t~~W~--~~~~~g 129 (520)
..++++|+.+++.... ...+.......+-.-+++.++++..+.. .....++++++.+..-. .+- .
T Consensus 147 ~~i~v~dl~tg~~~~~---~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-~- 221 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKV---DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH-E- 221 (695)
T ss_dssp CEEEEEETTTCCBCSS---CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE-C-
T ss_pred EEEEEEECCCCCCcCC---cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE-e-
Confidence 5799999999886411 1122112122222225565566554432 22456999998876521 111 1
Q ss_pred CCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEec
Q 010011 130 EGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (520)
Q Consensus 130 ~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG 208 (520)
....+....+... -+++.+++.... . ...+++|.+|..+..|..+... .... ...+..++.+|+...
T Consensus 222 ~~~~~~~~~~~~~SpDG~~l~~~~~~------~-~~~~~l~~~~~~~~~~~~l~~~----~~~~-~~~~~~~g~l~~~s~ 289 (695)
T 2bkl_A 222 RTGDPTTFLQSDLSRDGKYLFVYILR------G-WSENDVYWKRPGEKDFRLLVKG----VGAK-YEVHAWKDRFYVLTD 289 (695)
T ss_dssp CCCCTTCEEEEEECTTSCCEEEEEEE------T-TTEEEEEEECTTCSSCEEEEEC----SSCC-EEEEEETTEEEEEEC
T ss_pred cCCCCEEEEEEEECCCCCEEEEEEeC------C-CCceEEEEEcCCCCceEEeecC----CCce-EEEEecCCcEEEEEC
Confidence 1111122222222 244444443311 0 0356788888877788877532 1111 222224555655544
Q ss_pred CCCCCcccCceEEEECCCCc---EEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 209 EDGHDYYLSDVHILDTDTLT---WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~---W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
.+. ....++.+|+.+.. |+.+.... ....-......++++++...... ...+|.+|+....-..+
T Consensus 290 ~~~---~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 290 EGA---PRQRVFEVDPAKPARASWKEIVPED---SSASLLSVSIVGGHLSLEYLKDA----TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp TTC---TTCEEEEEBTTBCSGGGCEEEECCC---SSCEEEEEEEETTEEEEEEEETT----EEEEEEEETTCCEEEEC
T ss_pred CCC---CCCEEEEEeCCCCCccCCeEEecCC---CCCeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCeeEEe
Confidence 321 23568999987654 88876421 11222223344888877765432 34588999765543333
No 100
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.94 E-value=4.4 Score=38.79 Aligned_cols=211 Identities=7% Similarity=0.016 Sum_probs=102.3
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
+++..++.||+.+..+ ..+++||+.+++...+... ....-++++.. ++++|+.+..+. .....+++||
T Consensus 50 ~~~~~~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d 118 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFE------GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAAT 118 (333)
T ss_dssp EEECTTSCEEEEETTT------CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEEC
T ss_pred cEECCCCCEEEEECCC------CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCCC-CCCceEEEEe
Confidence 3343334587766532 4689999999888765311 11122333332 567887753221 1224799999
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCccee
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~ 195 (520)
+.+......-. .......-..++.. ++++|+...... .......++++|+.+.+...+..... ....
T Consensus 119 ~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~ 186 (333)
T 2dg1_A 119 ENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGY-----STNPLGGVYYVSPDFRTVTPIIQNIS-----VANG 186 (333)
T ss_dssp TTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCB-----TTBCCEEEEEECTTSCCEEEEEEEES-----SEEE
T ss_pred CCCCEEEEEEc--cCccCCcccceEECCCCCEEEEecccc-----ccCCCceEEEEeCCCCEEEEeecCCC-----cccc
Confidence 98876543211 11111111222222 467887543210 11123578999988766665531100 1122
Q ss_pred EEee-CC-EEEEEecCCCCCcccCceEEEECCC--CcEEEeeCC--CCCCCCCceeEEEE-ECCEEEEEecccCCCCccC
Q 010011 196 CSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTS--GMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYD 268 (520)
Q Consensus 196 ~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~t--~~W~~~~~~--~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~ 268 (520)
++.. ++ .||+.... .+.+++||+.+ .....+... ........-..++. -++++|+..... +
T Consensus 187 i~~~~dg~~l~v~~~~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~------~ 254 (333)
T 2dg1_A 187 IALSTDEKVLWVTETT------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ------G 254 (333)
T ss_dssp EEECTTSSEEEEEEGG------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT------T
T ss_pred eEECCCCCEEEEEeCC------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC------C
Confidence 3322 33 57776432 24688899853 233322100 00111011112222 246677765321 3
Q ss_pred cEEEEecCCCcEEEe
Q 010011 269 DLYMIDVDSGLWTKV 283 (520)
Q Consensus 269 dv~~yd~~~~~W~~l 283 (520)
.|.+||++...-..+
T Consensus 255 ~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 255 RVLVFNKRGYPIGQI 269 (333)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 489999865544444
No 101
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.90 E-value=5.1 Score=39.05 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=57.9
Q ss_pred eceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCc
Q 010011 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 243 (520)
Q Consensus 165 ~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~ 243 (520)
...++++|+.+.+...+... .....+..... ++..+++............++.+|+.+..+..+... .+....
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~ 240 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH--AEGESC 240 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC--CTTEEE
T ss_pred cceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc--CCCccc
Confidence 35789999988887766521 11122222222 344333332222211235799999988877766431 011011
Q ss_pred eeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 244 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 244 ~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
.+.+..-+++.+++...... .....++++|+.++....+..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~ 281 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKG-QTDRVIYKANPETLENEEVMV 281 (396)
T ss_dssp EEEEECTTSSCEEEEEEETT-TCCEEEEEECTTTCCEEEEEE
T ss_pred cceEECCCCCEEEEEecCCC-CccceEEEEECCCCCeEEeee
Confidence 11122224454444433221 111339999999988777654
No 102
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.89 E-value=6.7 Score=42.00 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=69.1
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEEC-CCCe--EEeecccCC--CCCCC---CCceEEE--ECCE----EEEEeCC
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDT-SSHT--WISPSVRGE--GPEAR---EGHSAAL--VGKR----LFIFGGC 153 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~t~~--W~~~~~~g~--~p~~r---~~hs~~~--~~~~----lyv~GG~ 153 (520)
.+-++.++.||+.+.. ...++++|. .+.+ |+.-..... .+..+ ...+.++ .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 3446679999998752 246999999 7754 876331110 01011 1223344 4666 777533
Q ss_pred CCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--E
Q 010011 154 GKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--W 229 (520)
Q Consensus 154 ~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W 229 (520)
...++.+|.++. .|+.-..... .......+-++.++.+|+-.+.. .......++.||.++.+ |
T Consensus 130 -----------dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~-e~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 -----------DGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGA-ELGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp -----------TSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCG-GGTCCCEEEEEETTTCCEEE
T ss_pred -----------CCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEECCEEEEEeccc-ccCCCCeEEEEECCCCcEEE
Confidence 246889998765 5875431100 00011123345688877643211 11123569999998765 8
Q ss_pred EEee
Q 010011 230 KELN 233 (520)
Q Consensus 230 ~~~~ 233 (520)
+.-.
T Consensus 197 ~~~~ 200 (599)
T 1w6s_A 197 RAYA 200 (599)
T ss_dssp EEES
T ss_pred EEcC
Confidence 7654
No 103
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.76 E-value=5.5 Score=38.90 Aligned_cols=223 Identities=11% Similarity=0.030 Sum_probs=107.1
Q ss_pred EEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECC-EEEEEcCCCCCCCCCcEEEEEC
Q 010011 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 39 ~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
..+++++|+.....+. ...+|++|+.+.+-.++. ..+.......+..-++ .|++... + ..++++|+
T Consensus 43 ~SpDg~~l~~~~~~~g----~~~l~~~d~~~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~-~-----~~l~~~d~ 109 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDG----PWNYYLLDLNTQVATQLT---EGRGDNTFGGFLSPDDDALFYVKD-G-----RNLMRVDL 109 (388)
T ss_dssp BCTTSCEEEEEECTTS----SCEEEEEETTTCEEEECC---CSSCBCSSSCEECTTSSEEEEEET-T-----TEEEEEET
T ss_pred CCCCCCEEEEEEcCCC----CceEEEEeCCCCceEEee---eCCCCCccceEEcCCCCEEEEEeC-C-----CeEEEEEC
Confidence 4456766655433111 246999999999888754 1121111112222244 4544442 1 47999999
Q ss_pred CCCeEEeecccCCCCCCCCCceEEE--ECCEEEEEeCCC-C--CCCCC--------CcceeceeEEEEcCcceEEEcccC
Q 010011 118 SSHTWISPSVRGEGPEAREGHSAAL--VGKRLFIFGGCG-K--SSNTN--------DEVYYNDLYILNTETFVWKRATTS 184 (520)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~--~~~~lyv~GG~~-~--~~~~~--------~~~~~~~v~~~d~~t~~W~~v~~~ 184 (520)
.+.+-..+. ..+.......... .++++++.--.. . ..... .......++++|+.+.+-+.+...
T Consensus 110 ~~g~~~~~~---~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 186 (388)
T 3pe7_A 110 ATLEENVVY---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE 186 (388)
T ss_dssp TTCCEEEEE---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred CCCcceeee---echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence 988765443 1222211111111 133333210000 0 00000 011236799999998877666421
Q ss_pred CCCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCC-CceeEEEEECCEEEEEecccC
Q 010011 185 GNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP-RAGHSTVAFGKNLFVFGGFTD 262 (520)
Q Consensus 185 ~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~-R~~hs~~~~~~~iyv~GG~~~ 262 (520)
.....+....- +++.+++............++.+|+.+.....+.. .... ...+.+..-+++.+++.....
T Consensus 187 ----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 187 ----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp ----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred ----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEEEecCC
Confidence 11223333333 55555554433222234679999998877666543 1111 111222222444333333221
Q ss_pred CCCccCcEEEEecCCCcEEEeee
Q 010011 263 SQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 263 ~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
. .....++++|++++.-+.+..
T Consensus 260 ~-~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 260 G-SPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp T-CCCEEEEEECTTTCCEEEEEE
T ss_pred C-CCcceEEEEecCCCceEEEEc
Confidence 1 111249999999998777654
No 104
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.74 E-value=4.7 Score=38.34 Aligned_cols=213 Identities=11% Similarity=-0.031 Sum_probs=102.1
Q ss_pred cceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCc
Q 010011 33 WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 33 ~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~ 111 (520)
.+-..+...+++.||+..-. ...+++||+.++....... + .+ -.+++.. ++++|+.. .+.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~-~~-~~~i~~~~dG~l~v~~-------~~~ 74 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIP------AKKVCRWDSFTKQVQRVTM----D-AP-VSSVALRQSGGYVATI-------GTK 74 (297)
T ss_dssp BEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEC----S-SC-EEEEEEBTTSSEEEEE-------TTE
T ss_pred cccCCeEECCCCEEEEEECC------CCEEEEEECCCCcEEEEeC----C-Cc-eEEEEECCCCCEEEEE-------CCe
Confidence 34444445556678877542 2568999999887655431 1 11 1222222 55666653 247
Q ss_pred EEEEECCCCeEEeecccCC-CCCCCCCceEEEECCEEEEEeCCCCCCC-CCCcceeceeEEEEcCcceEEEcccCCCCCC
Q 010011 112 LHILDTSSHTWISPSVRGE-GPEAREGHSAALVGKRLFIFGGCGKSSN-TNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (520)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~-~p~~r~~hs~~~~~~~lyv~GG~~~~~~-~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~ 189 (520)
+++||+.+.+++.+..... .+..+....++.-++++|+-. ...... .........+|++++.. +...+.....
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~--- 149 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD--- 149 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES---
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEEEEeeccc---
Confidence 9999999998876543211 111111212222256777632 110000 00011234688888753 3333221101
Q ss_pred CCcceeEEee--CCEEEEEecCCCCCcccCceEEEEC--CCCcEEEeeCCCCCCC-CCceeEEEE-ECCEEEEEecccCC
Q 010011 190 ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDT--DTLTWKELNTSGMVLS-PRAGHSTVA-FGKNLFVFGGFTDS 263 (520)
Q Consensus 190 ~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~--~t~~W~~~~~~~~~p~-~R~~hs~~~-~~~~iyv~GG~~~~ 263 (520)
....++.. ++.||+.... .+.+++||. ++............+. ...-..++. -+++||+..-..
T Consensus 150 --~pngi~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-- 219 (297)
T 3g4e_A 150 --ISNGLDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-- 219 (297)
T ss_dssp --BEEEEEECTTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT--
T ss_pred --cccceEEcCCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC--
Confidence 11223332 3467777542 345888875 5555432111000111 111112333 356787764321
Q ss_pred CCccCcEEEEecCCCcEEEe
Q 010011 264 QNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 264 ~~~~~dv~~yd~~~~~W~~l 283 (520)
+.|++||+++++....
T Consensus 220 ----~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 220 ----GRVIRLDPVTGKRLQT 235 (297)
T ss_dssp ----TEEEEECTTTCCEEEE
T ss_pred ----CEEEEEcCCCceEEEE
Confidence 2499999997765443
No 105
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.73 E-value=4.2 Score=39.80 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=36.6
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCC--CCCceeEEEE-ECCEEEEEecccCCCCccCcEEEEecC
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL--SPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p--~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (520)
++ +++.|+.+ ..+..||+.+.+....-...... ....-.++.. -++++++.|+... ....+.+||+.
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---SFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET---TEEEEEEEETT
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC---CCceEEEEECC
Confidence 56 77777644 34889999876544332200000 0111122222 2456777776531 11358999998
Q ss_pred CCcE
Q 010011 277 SGLW 280 (520)
Q Consensus 277 ~~~W 280 (520)
+..-
T Consensus 267 ~~~~ 270 (397)
T 1sq9_A 267 FGER 270 (397)
T ss_dssp TCCE
T ss_pred CCcc
Confidence 7653
No 106
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=93.70 E-value=4.2 Score=37.42 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=95.8
Q ss_pred EEEEEcCCCEEEE-EcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEE
Q 010011 36 TCNAIKGGRFLYV-FGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 36 s~~~v~~g~~Iyi-~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~ 113 (520)
.++++..++.||+ .... .+.+++||..+.....+.. ... ..-++++.. +++||+... ...++
T Consensus 27 ~~i~~~~~g~l~v~~~~~------~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~~~~g~l~v~~~------~~~i~ 90 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGM------YGRVVKLATGSTGTTVLPF-NGL---YQPQGLAVDGAGTVYVTDF------NNRVV 90 (270)
T ss_dssp EEEEECTTCCEEEEECSS------SCEEEEECC-----EECCC-CSC---CSCCCEEECTTCCEEEEET------TTEEE
T ss_pred cceEECCCCCEEEEccCC------CCcEEEecCCCcccceEee-CCc---CCcceeEECCCCCEEEEcC------CCEEE
Confidence 3444433335887 4332 2468889987766554321 111 122334443 467888764 24689
Q ss_pred EEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCc
Q 010011 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (520)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~ 192 (520)
+||+.+........ .....-+.++.. ++++|+.... ...+++++..+......... .. ..
T Consensus 91 ~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~-~~---~~ 151 (270)
T 1rwi_B 91 TLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----------NNRVVKLAAGSKTQTVLPFT-GL---ND 151 (270)
T ss_dssp EECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----------GTEEEEECTTCCSCEECCCC-SC---CS
T ss_pred EEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----------CCEEEEEECCCceeEeeccc-cC---CC
Confidence 99988765443321 111112333333 4678886441 24577887765544332211 11 11
Q ss_pred ceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcE
Q 010011 193 SHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDL 270 (520)
Q Consensus 193 ~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv 270 (520)
-..++.. ++++|+.... .+.+.+||+.+..-......+ . ..-..++.. ++.+|+..... +.|
T Consensus 152 p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~-~---~~p~~i~~d~~g~l~v~~~~~------~~v 215 (270)
T 1rwi_B 152 PDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFTD-I---TAPWGIAVDEAGTVYVTEHNT------NQV 215 (270)
T ss_dssp CCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCSS-C---CSEEEEEECTTCCEEEEETTT------SCE
T ss_pred ceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeecccC-C---CCceEEEECCCCCEEEEECCC------CcE
Confidence 1233333 5678887542 245889998876644332211 1 112233333 34787765432 348
Q ss_pred EEEecCCCcE
Q 010011 271 YMIDVDSGLW 280 (520)
Q Consensus 271 ~~yd~~~~~W 280 (520)
++||+....-
T Consensus 216 ~~~~~~~~~~ 225 (270)
T 1rwi_B 216 VKLLAGSTTS 225 (270)
T ss_dssp EEECTTCSCC
T ss_pred EEEcCCCCcc
Confidence 9999877643
No 107
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.69 E-value=7.2 Score=41.88 Aligned_cols=194 Identities=10% Similarity=0.039 Sum_probs=98.4
Q ss_pred cCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC-eEEeecccCCCC-CC
Q 010011 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH-TWISPSVRGEGP-EA 134 (520)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p-~~ 134 (520)
...++++|..+++-..+.. ..........+.+ +++.++++..+.......++++|+.+. .+..+....... ..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 3569999999888665431 1111111122222 454444443333334458999999998 666543211100 00
Q ss_pred CCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee--C-CEEEEEecC
Q 010011 135 REGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--K-NKIIVIGGE 209 (520)
Q Consensus 135 r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~--~-~~lyv~GG~ 209 (520)
......... ++++++.+..+ + ...+|.+|......+.+... .. ....+..+ + +.||+.+..
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~------g---~~~l~~~~~~~~~~~~l~~~---~~--~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRD------G---WNHLYLYDTTGRLIRQVTKG---EW--EVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTT------S---SCEEEEEETTSCEEEECCCS---SS--CEEEEEEECTTSSEEEEEESS
T ss_pred ccCCceeecCCCCEEEEEEccC------C---ccEEEEEECCCCEEEecCCC---Ce--EEEeeeEEcCCCCEEEEEecC
Confidence 011122333 56765555421 1 35688888777777776421 11 11121222 3 456555543
Q ss_pred CCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 210 DGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 210 ~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
++. ....++.+|..+...+.+.. .. ..+++.. -+++.+++..... ....+++++|+++.+
T Consensus 377 ~~~--~~~~l~~~d~~~~~~~~l~~-----~~-~~~~~~~spdg~~l~~~~~~~--~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 377 ASP--LERHFYCIDIKGGKTKDLTP-----ES-GMHRTQLSPDGSAIIDIFQSP--TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCT--TCBEEEEEETTCCCCEESCC-----SS-SEEEEEECTTSSEEEEEEECS--SCSCEEEEEESSSCE
T ss_pred CCC--ceEEEEEEEcCCCCceeccC-----CC-ceEEEEECCCCCEEEEEecCC--CCCcEEEEEECCCCe
Confidence 221 23468999998877665542 11 1223332 2455555554332 223569999998876
No 108
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=93.55 E-value=4.4 Score=40.59 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=32.6
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
+.+++.|+.++ .+..||+.+..-...-. + ..... .+++. -+++.++.||.+ ..|.+||+.+..
T Consensus 308 g~~l~sgs~D~------~i~iwd~~~~~~~~~~~-~--h~~~v-~~v~~~~~g~~l~s~s~D------~~i~vwd~~~~~ 371 (410)
T 1vyh_C 308 GPFLLSGSRDK------TIKMWDVSTGMCLMTLV-G--HDNWV-RGVLFHSGGKFILSCADD------KTLRVWDYKNKR 371 (410)
T ss_dssp CCEEEEEETTS------EEEEEETTTTEEEEEEE-C--CSSCE-EEEEECSSSSCEEEEETT------TEEEEECCTTSC
T ss_pred CCEEEEEeCCC------eEEEEECCCCceEEEEE-C--CCCcE-EEEEEcCCCCEEEEEeCC------CeEEEEECCCCc
Confidence 45667776543 48888987764222111 0 11111 12222 245566666653 248889987654
No 109
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.45 E-value=7.1 Score=39.26 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=57.4
Q ss_pred CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEE
Q 010011 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHIL 222 (520)
Q Consensus 144 ~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~y 222 (520)
++.+++.|+. ...+.++|+.+.+-...-. ..... -.+++. .++..++.|+.++ .+..|
T Consensus 279 ~~~~l~~~~~-----------d~~i~vwd~~~~~~~~~~~---~~~~~-v~~~~~~~~~~~l~sg~~dg------~i~vw 337 (464)
T 3v7d_B 279 HGNIVVSGSY-----------DNTLIVWDVAQMKCLYILS---GHTDR-IYSTIYDHERKRCISASMDT------TIRIW 337 (464)
T ss_dssp ETTEEEEEET-----------TSCEEEEETTTTEEEEEEC---CCSSC-EEEEEEETTTTEEEEEETTS------CEEEE
T ss_pred CCCEEEEEeC-----------CCeEEEEECCCCcEEEEec---CCCCC-EEEEEEcCCCCEEEEEeCCC------cEEEE
Confidence 4456666663 2457888887765433211 11111 122222 2556777777543 48899
Q ss_pred ECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcE
Q 010011 223 DTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 223 d~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
|+.+.+-...- ........++...+..++.|+.+. .+.+||+.+..-
T Consensus 338 d~~~~~~~~~~-----~~h~~~v~~~~~~~~~l~s~s~dg------~v~vwd~~~~~~ 384 (464)
T 3v7d_B 338 DLENGELMYTL-----QGHTALVGLLRLSDKFLVSAAADG------SIRGWDANDYSR 384 (464)
T ss_dssp ETTTTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------EEEEEETTTCCE
T ss_pred ECCCCcEEEEE-----eCCCCcEEEEEEcCCEEEEEeCCC------cEEEEECCCCce
Confidence 99876533221 112222344455667777777643 489999988653
No 110
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.35 E-value=2.1 Score=42.14 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=85.2
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCc-eEEEE--CCEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h-s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
+++.++.|+.++ .+.++|..+.+-...- .+ ....- +++.. ++.+++.||.+ ..+.+
T Consensus 150 dg~~l~sgs~dg-----~v~iwd~~~~~~~~~~-~~----h~~~v~~v~~s~~~~~~~~s~~~d-----------g~v~~ 208 (357)
T 4g56_B 150 DGTQAVSGGKDF-----SVKVWDLSQKAVLKSY-NA----HSSEVNCVAACPGKDTIFLSCGED-----------GRILL 208 (357)
T ss_dssp SSSEEEEEETTS-----CEEEEETTTTEEEEEE-CC----CSSCEEEEEECTTCSSCEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEE-cC----CCCCEEEEEEccCCCceeeeeccC-----------CceEE
Confidence 556777776543 4888999887654321 11 01111 22222 23467777631 34667
Q ss_pred EEcCcceEEEcccCCCCCCCCcceeEEee---CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEE
Q 010011 171 LNTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (520)
Q Consensus 171 ~d~~t~~W~~v~~~~~~p~~r~~h~~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~ 247 (520)
+|+.+.+-.... ..........++.+ ++.+++.|+.++ .+..||+.+.+-...- ........+
T Consensus 209 wd~~~~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~------~i~~wd~~~~~~~~~~-----~~~~~~v~~ 274 (357)
T 4g56_B 209 WDTRKPKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDETG------NVSLVNIKNPDSAQTS-----AVHSQNITG 274 (357)
T ss_dssp CCTTSSSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSS------CEEEEESSCGGGCEEE-----CCCSSCEEE
T ss_pred EECCCCceeeee---eeccccccccchhhhhcccceEEEeeccc------ceeEEECCCCcEeEEE-----eccceeEEE
Confidence 777665422211 11111111222222 456777777543 4788888765422111 111111122
Q ss_pred EEE--C-CEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 248 VAF--G-KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 248 ~~~--~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
+.+ + .++++.|+.+. .|.+||+++.+-... .+ ......++++. ..++.+++.||.+..
T Consensus 275 l~~sp~~~~~lasgs~D~------~i~iwd~~~~~~~~~--~~----H~~~V~~vafs-P~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDC------TVAVLDADFSEVFRD--LS----HRDFVTGVAWS-PLDHSKFTTVGWDHK 335 (357)
T ss_dssp EEECSSSSCCEEEEETTS------CEEEECTTSCEEEEE--CC----CSSCEEEEEEC-SSSTTEEEEEETTSC
T ss_pred EEEcCCCCCEEEEEeCCC------EEEEEECCCCcEeEE--CC----CCCCEEEEEEe-CCCCCEEEEEcCCCe
Confidence 222 3 35666666532 389999988754433 21 11112222332 235667778887664
No 111
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.32 E-value=5.1 Score=39.27 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=85.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE---CCEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
+++.++.|+.++ .+.++|+.+.+-...- .+ ....-.++.. +..+++.|+.+ ..+.+
T Consensus 138 dg~~l~sgs~d~-----~i~iwd~~~~~~~~~~-~~----h~~~V~~~~~~~~~~~~l~s~s~D-----------~~v~i 196 (344)
T 4gqb_B 138 SGTQAVSGSKDI-----CIKVWDLAQQVVLSSY-RA----HAAQVTCVAASPHKDSVFLSCSED-----------NRILL 196 (344)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEE-CC----CSSCEEEEEECSSCTTEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEE-cC----cCCceEEEEecCCCCCceeeeccc-----------ccccc
Confidence 566777777653 4888999887643221 11 0111112222 23577777732 34778
Q ss_pred EEcCcceEEE-cccCCCCCCCCcceeEEee---CCEEEEEecCCCCCcccCceEEEECCCCcEE-EeeCCCCCCCCCcee
Q 010011 171 LNTETFVWKR-ATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-ELNTSGMVLSPRAGH 245 (520)
Q Consensus 171 ~d~~t~~W~~-v~~~~~~p~~r~~h~~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~-~~~~~~~~p~~R~~h 245 (520)
+|+.+.+-.. +.. ........++.+ ++.+++.|+.++ .+.+||+.+.+-. .+.. ....-.
T Consensus 197 wd~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~l~sg~~dg------~v~~wd~~~~~~~~~~~~-----h~~~v~ 261 (344)
T 4gqb_B 197 WDTRCPKPASQIGC----SAPGYLPTSLAWHPQQSEVFVFGDENG------TVSLVDTKSTSCVLSSAV-----HSQCVT 261 (344)
T ss_dssp EETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTS------EEEEEESCC--CCEEEEC-----CSSCEE
T ss_pred ccccccceeeeeec----ceeeccceeeeecCCCCcceEEeccCC------cEEEEECCCCcEEEEEcC-----CCCCEE
Confidence 8887654322 211 111111122222 556888887543 4778888764321 1111 011111
Q ss_pred EEEEE-C-CEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 246 STVAF-G-KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 246 s~~~~-~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
+++.. + .++++.|+.+. .|.+||..+.+-..+. +. .....++.+. ..+..+++.||.+..
T Consensus 262 ~v~fsp~g~~~lasgs~D~------~i~vwd~~~~~~~~~~--~H----~~~V~~v~~s-p~~~~llas~s~D~~ 323 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDC------SLAVLDSSLSELFRSQ--AH----RDFVRDATWS-PLNHSLLTTVGWDHQ 323 (344)
T ss_dssp EEEECSSSSCCEEEEETTS------CEEEECTTCCEEEEEC--CC----SSCEEEEEEC-SSSTTEEEEEETTSC
T ss_pred EEEEccCCCeEEEEEeCCC------eEEEEECCCCcEEEEc--CC----CCCEEEEEEe-CCCCeEEEEEcCCCe
Confidence 22222 2 35666676542 3889999887543332 11 1112222222 345567778887765
No 112
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=93.32 E-value=2.6 Score=41.62 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=75.1
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCe------EEeecccCCCCCCCCCceEEEEC--CEEEEEeCCCCCCCCCCcceec
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHT------WISPSVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYN 166 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~------W~~~~~~g~~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~~ 166 (520)
+.+++.|+.+ ..+.+||+.+.. -.. ...........-.+++... +.+++.|+. ..
T Consensus 126 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg 188 (416)
T 2pm9_A 126 DNVLASGGNN-----GEIFIWDMNKCTESPSNYTPL-TPGQSMSSVDEVISLAWNQSLAHVFASAGS-----------SN 188 (416)
T ss_dssp TTBEEEECSS-----SCEEBCBTTTTSSCTTTCCCB-CCCCSCCSSCCCCEEEECSSCTTEEEEESS-----------SS
T ss_pred CCEEEEEcCC-----CeEEEEECCCCcccccccccc-ccccccCCCCCeeEEEeCCCCCcEEEEEcC-----------CC
Confidence 5677777754 347888887654 110 0000001111122333332 467777773 24
Q ss_pred eeEEEEcCcceEEEcccCCCCCC--CCcceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCC-CC
Q 010011 167 DLYILNTETFVWKRATTSGNPPS--ARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL-SP 241 (520)
Q Consensus 167 ~v~~~d~~t~~W~~v~~~~~~p~--~r~~h~~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p-~~ 241 (520)
.+.++|+.+.+....-....... ...-.+++.. + ..+++.|+.++. ...+..||+.+..-. +.. .. ..
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~~-~~~---~~~~~ 261 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANTP-LQT---LNQGH 261 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTSC-SBC---CCSCC
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCCC-cEE---eecCc
Confidence 57888988765443321100000 1112222222 3 357777765532 125778888764210 111 11 11
Q ss_pred CceeEEEEE---CCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 242 RAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 242 R~~hs~~~~---~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
......+.+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQL 298 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEE
T ss_pred cCceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCccc
Confidence 111222222 56677777754 24899998887543
No 113
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=93.27 E-value=0.68 Score=44.71 Aligned_cols=194 Identities=11% Similarity=0.125 Sum_probs=92.8
Q ss_pred EcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEEC----CEEEEEcCCCCCCCCCcEEEE
Q 010011 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG----ENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 40 v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~----~~iyv~GG~~~~~~~~~~~~y 115 (520)
.+++..+++.|+.... ...+.+||..+++.......+. ...-.+++... +.+++.|+.+ ..+.+|
T Consensus 27 ~p~~~~l~~~~s~~~~---d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iw 95 (357)
T 3i2n_A 27 VPCSAKFVTMGNFARG---TGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGDFG-----GNLHIW 95 (357)
T ss_dssp CTTSSEEEEEEC--CC---CEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEETT-----SCEEEE
T ss_pred cCCCceEEEecCccCC---CcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEecCC-----CeEEEE
Confidence 3456677777765321 2568899998887654321111 11111222222 3666677654 347888
Q ss_pred ECCCCe--EEeecccCCCCCCCCCceEEE-------ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce--EEEcccC
Q 010011 116 DTSSHT--WISPSVRGEGPEAREGHSAAL-------VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTS 184 (520)
Q Consensus 116 d~~t~~--W~~~~~~g~~p~~r~~hs~~~-------~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~--W~~v~~~ 184 (520)
|..+.. -..+. + ... .-.++.. .++.+++.|+. ...+.++|+.+.. ...+...
T Consensus 96 d~~~~~~~~~~~~--~-~~~--~v~~~~~~~~~~~s~~~~~l~~~~~-----------d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 96 NLEAPEMPVYSVK--G-HKE--IINAIDGIGGLGIGEGAPEIVTGSR-----------DGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp CTTSCSSCSEEEC--C-CSS--CEEEEEEESGGGCC-CCCEEEEEET-----------TSCEEEECTTSCSSCSEEECCC
T ss_pred eCCCCCccEEEEE--e-ccc--ceEEEeeccccccCCCccEEEEEeC-----------CCeEEEEeCCCCCCcceecccc
Confidence 877654 11111 0 000 0011111 23556666663 2357788877643 3333211
Q ss_pred CCCCCCCcceeEE-----eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE----CCEEE
Q 010011 185 GNPPSARDSHTCS-----SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF----GKNLF 255 (520)
Q Consensus 185 ~~~p~~r~~h~~~-----~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~----~~~iy 255 (520)
.. ...+...+++ ..++.+++.|+.+ ..+..||+.+.+-..... ....-.++... ++..+
T Consensus 160 ~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 160 QG-ENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRWETN-----IKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp TT-SCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEEEEE-----CSSCEEEEEESCSSSSCCEE
T ss_pred CC-CCCCceEEEEEEeccCCCCCEEEEEccC------CeEEEEECccCceeeecC-----CCCceEEEEcCCCCCCCCEE
Confidence 00 0111222222 1366777777654 358899998876543322 11112223333 45667
Q ss_pred EEecccCCCCccCcEEEEecCCC
Q 010011 256 VFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 256 v~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
+.|+.. ..+.+||+.+.
T Consensus 228 ~~~~~d------g~i~i~d~~~~ 244 (357)
T 3i2n_A 228 VATSLE------GKFHVFDMRTQ 244 (357)
T ss_dssp EEEEST------TEEEEEEEEEE
T ss_pred EEECCC------CeEEEEeCcCC
Confidence 777653 24788887653
No 114
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=93.26 E-value=1.8 Score=41.57 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=22.8
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEe
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ 74 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~ 74 (520)
+..+..++++.+|+.+.. ...+++||+.+++...
T Consensus 46 ~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEE
T ss_pred ceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcEEE
Confidence 344455667778877642 2569999999887554
No 115
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.22 E-value=5.6 Score=37.42 Aligned_cols=249 Identities=12% Similarity=0.067 Sum_probs=121.4
Q ss_pred cceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCc
Q 010011 33 WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 33 ~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~ 111 (520)
.....+..++++.||+.+.. ...+++||+.++ ...+.. +. ..-.+++.. ++++|+.... ...
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~------~~~i~~~~~~~~-~~~~~~----~~-~~~~~l~~~~dg~l~v~~~~-----~~~ 91 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVR------QNRTWAWSDDGQ-LSPEMH----PS-HHQNGHCLNKQGHLIACSHG-----LRR 91 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGG------GTEEEEEETTSC-EEEEES----SC-SSEEEEEECTTCCEEEEETT-----TTE
T ss_pred cccCCeEeCCCCEEEEEeCC------CCEEEEEECCCC-eEEEEC----CC-CCcceeeECCCCcEEEEecC-----CCe
Confidence 34455555667668877653 246899999988 665442 11 112233332 5678776531 246
Q ss_pred EEEEECCCCeEEeeccc-CCCCCCCCCceEEEECCEEEEE----eCCCCC--CCCCCcceeceeEEEEcCcceEEEcccC
Q 010011 112 LHILDTSSHTWISPSVR-GEGPEAREGHSAALVGKRLFIF----GGCGKS--SNTNDEVYYNDLYILNTETFVWKRATTS 184 (520)
Q Consensus 112 ~~~yd~~t~~W~~~~~~-g~~p~~r~~hs~~~~~~~lyv~----GG~~~~--~~~~~~~~~~~v~~~d~~t~~W~~v~~~ 184 (520)
+++||+.+.+.+.+... ...+..+....++.-++++|+. |..... ...........++++++. .+...+...
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD 170 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC
Confidence 99999988887654311 0111111122233335788886 321000 000001112478999987 555554321
Q ss_pred CCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECC-CCcE-EEeeCCCCCCCCCceeEEEEECCEEEEEeccc
Q 010011 185 GNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTD-TLTW-KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 261 (520)
Q Consensus 185 ~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W-~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~ 261 (520)
.. ....++. .++++++.... .+.+++||+. +.+. ...... ......-...+..-+++||+..+
T Consensus 171 --~~---~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~-- 236 (296)
T 3e5z_A 171 --RV---KPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAG-- 236 (296)
T ss_dssp --CS---SEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEET--
T ss_pred --CC---CCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcC--
Confidence 11 1122332 25555544432 2468889876 5555 211110 01111111122333567887761
Q ss_pred CCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeeccccc
Q 010011 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 334 (520)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~ 334 (520)
+.|.+||++......+... ..| ..+++....++.||+... +-+|++++....
T Consensus 237 ------~~v~~~~~~g~~~~~~~~~-~~~------~~~~f~~~d~~~L~v~t~--------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 237 ------DGVHVLTPDGDELGRVLTP-QTT------SNLCFGGPEGRTLYMTVS--------TEFWSIETNVRG 288 (296)
T ss_dssp ------TEEEEECTTSCEEEEEECS-SCC------CEEEEESTTSCEEEEEET--------TEEEEEECSCCB
T ss_pred ------CeEEEECCCCCEEEEEECC-CCc------eeEEEECCCCCEEEEEcC--------CeEEEEEccccc
Confidence 3489999986655555432 111 122222233456666431 257888765544
No 116
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.21 E-value=2.2 Score=46.67 Aligned_cols=192 Identities=10% Similarity=0.040 Sum_probs=92.0
Q ss_pred EcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEEC
Q 010011 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 40 v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
.++++ .++.|+. ...+.+||..+++....- .+. ...-.+..+ ++..++.|+.+ ..+.+||.
T Consensus 64 s~~~~-~l~~~~~------dg~i~vw~~~~~~~~~~~-~~~----~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~ 126 (814)
T 3mkq_A 64 IARKN-WIIVGSD------DFRIRVFNYNTGEKVVDF-EAH----PDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNW 126 (814)
T ss_dssp EGGGT-EEEEEET------TSEEEEEETTTCCEEEEE-ECC----SSCEEEEEECSSSSEEEEEETT-----SEEEEEEG
T ss_pred eCCCC-EEEEEeC------CCeEEEEECCCCcEEEEE-ecC----CCCEEEEEEeCCCCEEEEEcCC-----CEEEEEEC
Confidence 34455 4455553 246889999887765422 111 111122222 44455566543 35888888
Q ss_pred CCC-eEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcce
Q 010011 118 SSH-TWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (520)
Q Consensus 118 ~t~-~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h 194 (520)
.++ .....- .+ ....-.+++.. ++.+++.|+. ...+.+||+.+..-...... .......
T Consensus 127 ~~~~~~~~~~-~~---~~~~v~~~~~~p~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~~---~~~~~v~ 188 (814)
T 3mkq_A 127 ENNWALEQTF-EG---HEHFVMCVAFNPKDPSTFASGCL-----------DRTVKVWSLGQSTPNFTLTT---GQERGVN 188 (814)
T ss_dssp GGTSEEEEEE-EC---CSSCEEEEEEETTEEEEEEEEET-----------TSEEEEEETTCSSCSEEEEC---CCTTCCC
T ss_pred CCCceEEEEE-cC---CCCcEEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcceeEEec---CCCCCEE
Confidence 775 332221 11 01111223333 3457777773 24577888754332111100 1111112
Q ss_pred eEEe-e--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEE
Q 010011 195 TCSS-W--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLY 271 (520)
Q Consensus 195 ~~~~-~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~ 271 (520)
.+.. . ++.+++.|+.++ .+..||..+.+-...-. .........+..-++.+++.|+.++ .+.
T Consensus 189 ~~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg------~v~ 253 (814)
T 3mkq_A 189 YVDYYPLPDKPYMITASDDL------TIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDG------TLK 253 (814)
T ss_dssp EEEECCSTTCCEEEEECTTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTS------CEE
T ss_pred EEEEEECCCCCEEEEEeCCC------EEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCC------eEE
Confidence 2222 2 566777777543 48889987765332211 1111111112222455777777543 388
Q ss_pred EEecCCCcEE
Q 010011 272 MIDVDSGLWT 281 (520)
Q Consensus 272 ~yd~~~~~W~ 281 (520)
+||+.+..-.
T Consensus 254 vwd~~~~~~~ 263 (814)
T 3mkq_A 254 IWNSSTYKVE 263 (814)
T ss_dssp EEETTTCSEE
T ss_pred EEECCCCcEE
Confidence 8998876543
No 117
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.16 E-value=8.4 Score=41.03 Aligned_cols=117 Identities=15% Similarity=0.265 Sum_probs=62.7
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCCCC---CCcceEEEECCEEEEEcCCCCCCCCCcEEEEEC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTP---RDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~---R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
++.||+.... +.++.+|..++ .|+.-........+ ....+.+..+++||+... ...++.+|.
T Consensus 68 ~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~AlD~ 134 (582)
T 1flg_A 68 DGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVALNK 134 (582)
T ss_dssp TTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEEEES
T ss_pred CCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEEEEC
Confidence 5678887553 23899998876 58873211110000 112344567899988642 247999999
Q ss_pred CCCe--EEeecccCCCCCCCC--CceEEEECC------EEEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEc
Q 010011 118 SSHT--WISPSVRGEGPEARE--GHSAALVGK------RLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 181 (520)
Q Consensus 118 ~t~~--W~~~~~~g~~p~~r~--~hs~~~~~~------~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v 181 (520)
.|.+ |+.... .+...+ ..+-++.++ .+|+ |... .+......++.||..+. .|+.-
T Consensus 135 ~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~-----~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 135 NTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSG-----DEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp SSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBC-----GGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEEE-eccc-----cccCCCCEEEEEECCCCCEEeecC
Confidence 8875 875321 111111 112233445 5544 4311 01112457899998865 58653
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=93.16 E-value=5.7 Score=40.12 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=74.5
Q ss_pred EcCCCEEEEEcCcCCCCCCcCeEEEEECC--CCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEE
Q 010011 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 40 v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
.++++.|++.|+.+ ..+.+||.. ++.....-.....+ ..-.+++.. +++.++.|+. ...++.++
T Consensus 111 s~d~~~l~~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~-----~g~v~~~~ 177 (450)
T 2vdu_B 111 TSDESRLIACADSD------KSLLVFDVDKTSKNVLKLRKRFCFS--KRPNAISIAEDDTTVIIADK-----FGDVYSID 177 (450)
T ss_dssp CTTSSEEEEEEGGG------TEEEEEEECSSSSSCEEEEEEEECS--SCEEEEEECTTSSEEEEEET-----TSEEEEEE
T ss_pred cCCCCEEEEEECCC------CeEEEEECcCCCCceeeeeecccCC--CCceEEEEcCCCCEEEEEeC-----CCcEEEEe
Confidence 35666666777643 457788877 54433321000011 111122222 4556666653 24578888
Q ss_pred CCCCeEEeecccCCCCCCCCC-ceEEE-EC---CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCC
Q 010011 117 TSSHTWISPSVRGEGPEAREG-HSAAL-VG---KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~-hs~~~-~~---~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r 191 (520)
+.+........ ..+...... .+++. .+ +++++.|+.+ ..+.+||+.+.+.......+ ....
T Consensus 178 ~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~--h~~~ 243 (450)
T 2vdu_B 178 INSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG--HKHF 243 (450)
T ss_dssp TTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETT-----------SCEEEEEESCTTCEEEECCC--CSSC
T ss_pred cCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCC-----------CcEEEEECCCCceeeeeecC--CCCc
Confidence 76654321000 000000111 12222 35 6677777742 45778887765432221100 1111
Q ss_pred cceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEE
Q 010011 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (520)
Q Consensus 192 ~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~ 231 (520)
..+.+.. ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 244 v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKNLS 276 (450)
T ss_dssp EEEEEEC-STTEEEEEESS------SEEEEEETTTCCEEE
T ss_pred eEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcEee
Confidence 1222223 67777787744 358889988776443
No 119
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.86 E-value=7.9 Score=38.12 Aligned_cols=193 Identities=17% Similarity=0.151 Sum_probs=90.0
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
+++ .++.|+.+ ..+.++|..+.+-...- .+.. ......+..-+++.++.||.++ .+.+||+.+..
T Consensus 77 ~~~-~l~s~s~D------~~v~iWd~~~~~~~~~~-~~h~--~~v~~~~~s~~g~~las~~~d~-----~v~iw~~~~~~ 141 (380)
T 3iz6_a 77 EKN-WIVSASQD------GRLIVWNALTSQKTHAI-KLHC--PWVMECAFAPNGQSVACGGLDS-----ACSIFNLSSQA 141 (380)
T ss_dssp TSS-CEEEEETT------SEEEEEETTTTEEEEEE-ECCC--TTCCCCEECTTSSEEEECCSSS-----CCEEEECCCCS
T ss_pred CCC-EEEEEeCC------CeEEEEECCCCccceEE-ecCC--CCEEEEEECCCCCEEEEeeCCC-----cEEEEECCCCc
Confidence 444 45556532 45888998887644321 1111 1111222233567778888653 35666765432
Q ss_pred EEeecccCCCCCC--CCCce-----EEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCc
Q 010011 122 WISPSVRGEGPEA--REGHS-----AALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (520)
Q Consensus 122 W~~~~~~g~~p~~--r~~hs-----~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~ 192 (520)
-. .+..+.. ..+|. +... ++..++.|+. ...+.++|+.+.+-...-.. ..+....
T Consensus 142 ~~----~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~-----------D~~i~~wd~~~~~~~~~~~~-~~~~~h~ 205 (380)
T 3iz6_a 142 DR----DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG-----------DQTCVLWDVTTGQRISIFGS-EFPSGHT 205 (380)
T ss_dssp SC----CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT-----------TSCEEEECTTTCCEEEEECC-CSSSSCC
T ss_pred cc----cCCccceeeccCCCcceEEEEEecCCCCEEEEECC-----------CCcEEEEEcCCCcEEEEeec-ccCCCCc
Confidence 11 0111111 11221 1111 2334555653 23467788877654332211 1111111
Q ss_pred --ceeEEe--eCCEEEEEecCCCCCcccCceEEEECCCC--cEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCC
Q 010011 193 --SHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQN 265 (520)
Q Consensus 193 --~h~~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~ 265 (520)
-.++.. .++.+++.|+.++ .+..||+... .-..+.. ..... .++... +++.++.|+.+.
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~~----h~~~v-~~v~~~p~~~~l~s~s~D~--- 271 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYHG----HEGDI-NSVKFFPDGQRFGTGSDDG--- 271 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEECC----CSSCC-CEEEECTTSSEEEEECSSS---
T ss_pred cCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEECC----cCCCe-EEEEEecCCCeEEEEcCCC---
Confidence 111222 2567888888654 3778887532 2222211 01111 122222 456777777643
Q ss_pred ccCcEEEEecCCCcEEE
Q 010011 266 LYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 266 ~~~dv~~yd~~~~~W~~ 282 (520)
.+.+||+.+..-..
T Consensus 272 ---~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 272 ---TCRLFDMRTGHQLQ 285 (380)
T ss_dssp ---CEEEEETTTTEEEE
T ss_pred ---eEEEEECCCCcEEE
Confidence 38899998875443
No 120
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=92.81 E-value=8.8 Score=41.33 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=91.6
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEEEE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
+.+..++.+++.|+.+ ..+.++|..+..-...- .+.. ..-.+++. -+++.++.|+.++ .+.++|
T Consensus 436 v~~s~~g~~l~sgs~D------g~v~vwd~~~~~~~~~~-~~h~---~~v~~~~~s~~~~~l~s~s~D~-----~i~iwd 500 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWD------GELRLWDLAAGVSTRRF-VGHT---KDVLSVAFSLDNRQIVSASRDR-----TIKLWN 500 (694)
T ss_dssp EEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE-ECCS---SCEEEEEECTTSSCEEEEETTS-----CEEEEC
T ss_pred EEECCCCCEEEEEeCC------CcEEEEECCCCcceeEE-eCCC---CCEEEEEEeCCCCEEEEEeCCC-----EEEEEE
Confidence 3333333355666643 45888998877544311 1111 01111221 1455666666543 466777
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEEE-CC---EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCc
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAALV-GK---RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~---~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~ 192 (520)
.....-..+.. .....+....++.. .+ .+++.|+. ...+.++|+.+.+....-. .... .
T Consensus 501 ~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----------d~~v~vwd~~~~~~~~~~~---~h~~-~ 563 (694)
T 3dm0_A 501 TLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASW-----------DKTVKVWNLSNCKLRSTLA---GHTG-Y 563 (694)
T ss_dssp TTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEET-----------TSCEEEEETTTCCEEEEEC---CCSS-C
T ss_pred CCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeC-----------CCeEEEEECCCCcEEEEEc---CCCC-C
Confidence 65443222211 11111111222222 22 35666663 2457788887665433210 0111 1
Q ss_pred ceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEE
Q 010011 193 SHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLY 271 (520)
Q Consensus 193 ~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~ 271 (520)
-.+++. .++++++.||.++ .+.++|+.+.+-. .. ......-++++...+..++.++.. +.+.
T Consensus 564 v~~v~~spdg~~l~sg~~Dg------~i~iwd~~~~~~~--~~---~~~~~~v~~~~~sp~~~~l~~~~~------~~i~ 626 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKDG------VVLLWDLAEGKKL--YS---LEANSVIHALCFSPNRYWLCAATE------HGIK 626 (694)
T ss_dssp EEEEEECTTSSEEEEEETTS------BCEEEETTTTEEE--EC---CBCSSCEEEEEECSSSSEEEEEET------TEEE
T ss_pred EEEEEEeCCCCEEEEEeCCC------eEEEEECCCCceE--EE---ecCCCcEEEEEEcCCCcEEEEEcC------CCEE
Confidence 112222 2677888887653 3778898876532 22 111222334444444445555542 2388
Q ss_pred EEecCCCcEE
Q 010011 272 MIDVDSGLWT 281 (520)
Q Consensus 272 ~yd~~~~~W~ 281 (520)
+||+++..-.
T Consensus 627 iwd~~~~~~~ 636 (694)
T 3dm0_A 627 IWDLESKSIV 636 (694)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCCCh
Confidence 9999887543
No 121
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=92.80 E-value=6 Score=38.05 Aligned_cols=217 Identities=12% Similarity=0.078 Sum_probs=96.1
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECC-CCeEEeee---ccCCCCCCCC----cceEEEE-CCEEEEEcCCCCCC
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV-NQTWSQPV---IKGSPPTPRD----SHSCTTV-GENLYVFGGTDGMN 107 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~-t~~W~~l~---~~g~~P~~R~----~hs~~~~-~~~iyv~GG~~~~~ 107 (520)
.+..+++++||+.+.. ...+.+||.. +++...+. ..+..|.+|. -++++.. ++++|+.+..
T Consensus 91 ~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~---- 160 (347)
T 3hfq_A 91 VAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG---- 160 (347)
T ss_dssp EEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT----
T ss_pred EEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC----
Confidence 3445566667665421 1457778774 33433322 2222232221 2223322 5567776532
Q ss_pred CCCcEEEEECC-CCeEEeecccCCCCCCCCCceEEEE-CC-EEEEEeCCCCCCCCCCcceeceeEEEE--cCcceEEEcc
Q 010011 108 PLRDLHILDTS-SHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILN--TETFVWKRAT 182 (520)
Q Consensus 108 ~~~~~~~yd~~-t~~W~~~~~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d--~~t~~W~~v~ 182 (520)
.+.+++||+. +.+....... ..+....-..++.. ++ .+|+.+.. .+.+.+|+ ..+.++..+.
T Consensus 161 -~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~-----------~~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 161 -SDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGEL-----------SSQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp -TTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT-----------TTEEEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCC-----------CCEEEEEEecCCCCceEEee
Confidence 2468899987 5555433211 01111111122222 34 47776542 13344444 4356665443
Q ss_pred cCCCCCCC----CcceeEEe-eCC-EEEEEecCCCCCcccCceEEEECC-CCcEEEeeCCCCCCC-CCceeEEEEE-CC-
Q 010011 183 TSGNPPSA----RDSHTCSS-WKN-KIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLS-PRAGHSTVAF-GK- 252 (520)
Q Consensus 183 ~~~~~p~~----r~~h~~~~-~~~-~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~~~~~~~~p~-~R~~hs~~~~-~~- 252 (520)
.....+.. .....++. .++ .||+.+.. .+.+.+||+. +.+++.+.. .+. ...-..++.. ++
T Consensus 228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~spdg~ 298 (347)
T 3hfq_A 228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG------YNTLAVFAVTADGHLTLIQQ---ISTEGDFPRDFDLDPTEA 298 (347)
T ss_dssp EEESSCTTCCSCCEEEEEEECTTSCEEEEEEET------TTEEEEEEECGGGCEEEEEE---EECSSSCCCEEEECTTSS
T ss_pred eeeecCCCCCCCCcceeEEECCCCCEEEEEeCC------CCEEEEEEECCCCcEEEeEE---EecCCCCcCeEEECCCCC
Confidence 22122221 11122222 244 57776542 2457788875 334554443 111 1111122332 34
Q ss_pred EEEEEecccCCCCccCcEEEE--ecCCCcEEEeeeCCCCCC
Q 010011 253 NLFVFGGFTDSQNLYDDLYMI--DVDSGLWTKVITTGEGPS 291 (520)
Q Consensus 253 ~iyv~GG~~~~~~~~~dv~~y--d~~~~~W~~l~~~~~~p~ 291 (520)
.||+.+... +.+.+| |.++++-..+......|.
T Consensus 299 ~l~v~~~~~------~~v~v~~~d~~tg~l~~~~~~~~~p~ 333 (347)
T 3hfq_A 299 FVVVVNQNT------DNATLYARDLTSGKLSLLQKDVTVPE 333 (347)
T ss_dssp EEEEEETTT------TEEEEEEECTTTCCEEEEEEEEECTT
T ss_pred EEEEEEcCC------CcEEEEEEeCCCCeEEecccceecCC
Confidence 455544321 235555 778888877665333343
No 122
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=92.68 E-value=8.5 Score=40.94 Aligned_cols=217 Identities=10% Similarity=-0.038 Sum_probs=111.4
Q ss_pred EEcCCCEEEEEcCcCC----CCCCcCeEEEEECCC------CeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCC-C
Q 010011 39 AIKGGRFLYVFGGYGK----DNCQTNQVHVFDTVN------QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM-N 107 (520)
Q Consensus 39 ~v~~g~~Iyi~GG~~~----~~~~~~~~~~yd~~t------~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~-~ 107 (520)
..++|+.|+... ... .......++++|..+ .+...+.. .. + .........-+++..++...+.. .
T Consensus 137 ~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~-~-~~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 137 LLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD-DA-H-RFVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp EETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC-SC-S-SEECCCEECTTSSEEEEEEECTTCC
T ss_pred ECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCccccCCceeEEEe-cC-C-CcccCceECCCCCEEEEEECCCCCC
Confidence 346677665443 221 011335799999988 66665420 10 0 11111111224443333332221 1
Q ss_pred --CCCcEEEEECC-CC---eEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE
Q 010011 108 --PLRDLHILDTS-SH---TWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (520)
Q Consensus 108 --~~~~~~~yd~~-t~---~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~ 180 (520)
...+++++|+. +. ....+... .. ......+. -++++|+.+..+ + ...+|++|+.+.+++.
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~---~~-~~~~~~~~spdg~l~~~~~~~------~---~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLGG---PE-EAIAQAEWAPDGSLIVATDRT------G---WWNLHRVDPATGAATQ 279 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEEE---TT-BCEEEEEECTTSCEEEEECTT------S---SCEEEEECTTTCCEEE
T ss_pred CCCCcEEEEEEECCCCcccccEEeCCC---CC-ceEcceEECCCCeEEEEECCC------C---CeEEEEEECCCCceee
Confidence 13579999998 56 44443311 00 11112222 256777666531 1 2369999998888888
Q ss_pred cccCCCC---CCCCc-ceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEE-EEECCEE
Q 010011 181 ATTSGNP---PSARD-SHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST-VAFGKNL 254 (520)
Q Consensus 181 v~~~~~~---p~~r~-~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~-~~~~~~i 254 (520)
+...... |.-.. ...++.. ++++++.+.. + ...+|.+|+.+...+.+.. +.. ..... ...++.+
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~~l~~----~~~-~~~~~~s~~~~~~ 349 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELVDAAG----PWT-EWAATLTVSGTRA 349 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEEECCS----SCC-EEEEEEEEETTEE
T ss_pred cccccccccCccccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEEEecC----CCC-eEEEEEecCCCEE
Confidence 7532110 10000 1123333 6777776654 2 2468888998888776643 111 11222 3446676
Q ss_pred EEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 255 FVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 255 yv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
++..+..+ ....+|.+|+.++..+.+..
T Consensus 350 ~~~~~~~~---~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 350 VGVAASPR---TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp EEEEEETT---EEEEEEEEETTTCCEEEEES
T ss_pred EEEEcCCC---CCCEEEEEECCCCceEEeec
Confidence 66655422 24569999999988887753
No 123
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=92.66 E-value=2.2 Score=44.10 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=97.4
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe-
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT- 121 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~- 121 (520)
++++|+|-| +..|+||..+++...-. -+.+| . --++....+++|+|-| +..|+||..+.+
T Consensus 158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~~-w~gi~--~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v 218 (460)
T 1qhu_A 158 DEGILFFQG--------NRKWFWDLTTGTKKERS-WPAVG--N-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEV 218 (460)
T ss_dssp SSEEEEEET--------TEEEEEETTTTEEEEEC-CTTSC--C-CSEEEEETTEEEEEET-------TEEEEECTTTCCC
T ss_pred CCeEEEEec--------ccEEEEecccceeeccc-CCCCC--c-cchheeeCCceEEEEC-------CEEEEEcCccCcc
Confidence 457888877 45899999888765422 11222 2 3455566899999987 367888876543
Q ss_pred -----------EEeecccC------------CCC---CCC-CCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 122 -----------WISPSVRG------------EGP---EAR-EGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 122 -----------W~~~~~~g------------~~p---~~r-~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
|..++..| ..| .+. ..-+++. .++++|+|-| +..|++|.
T Consensus 219 ~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------------~~yWR~~~ 285 (460)
T 1qhu_A 219 PPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------------SHYWRLDT 285 (460)
T ss_dssp CTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------------TEEEECTT
T ss_pred cCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------------CEEEEEec
Confidence 22111101 000 111 1223333 4678999987 34566665
Q ss_pred CcceEEE--ccc-CCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeC--------CCCCCCC-
Q 010011 174 ETFVWKR--ATT-SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT--------SGMVLSP- 241 (520)
Q Consensus 174 ~t~~W~~--v~~-~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~--------~~~~p~~- 241 (520)
....+.. +.. -..+|.. --++...++++|+|=| +.+|+|+..+. .+.+.. .| +|..
T Consensus 286 ~~~~~~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG--------~~yw~f~~~~g-~~~~~GyPK~I~~~lG-lp~~~ 353 (460)
T 1qhu_A 286 NRDGWHSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD--------TKVYVFLTKGG-YTLVNGYPKRLEKELG-SPPVI 353 (460)
T ss_dssp GGGCCCCEEGGGTCTTSCSS--CSEEEEETTEEEEEET--------TEEEEEECSBS-CEECTTCCEEHHHHHC-CCSSC
T ss_pred CCCCcCccchhhhccCCCCC--CcEEEEECCeEEEEeC--------CEEEEEeCCCC-ceecCCCCeEHHHhcc-CCCcc
Confidence 4322211 111 1123332 2234445789999965 35778876431 122211 11 1221
Q ss_pred -CceeEEEE---ECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 242 -RAGHSTVA---FGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 242 -R~~hs~~~---~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
...--|+. .++++|+|-|. ..|+||....
T Consensus 354 ~~~~IDAA~~~~~~~ktyfFkG~--------~ywryd~~~~ 386 (460)
T 1qhu_A 354 SLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKSG 386 (460)
T ss_dssp CCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGGG
T ss_pred ccCcccEEEEeCCCCEEEEEECC--------EEEEEECCCC
Confidence 11122333 35789999884 3899997743
No 124
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.53 E-value=2.9 Score=42.26 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=93.3
Q ss_pred EEEEEc-CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeee-ccCCCCCCCCcceEEE--ECCEEEEEcCCCCCCCCCc
Q 010011 36 TCNAIK-GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-IKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 36 s~~~v~-~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~-~~g~~P~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~ 111 (520)
++++.. .+..+++.|+.+ ..+.++|..+..-..+. ..+. ...-.+++. .++.+++.|+.++ .
T Consensus 123 ~~l~~~P~~~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~-----~ 188 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGA---GGSITGLKFNPLNTNQFYASSMEG-----T 188 (435)
T ss_dssp EEEEECSSCTTCEEEEETT------SCEEEECSSCCSCCEEECCCSS---SCCCCEEEECSSCTTEEEEECSSS-----C
T ss_pred EEEEEeCCCCCEEEEEeCC------CEEEEEECCCCCceeEEEccCC---CCCEEEEEEeCCCCCEEEEEeCCC-----E
Confidence 344442 233467777743 34788888766533321 1111 111122222 2456777777653 4
Q ss_pred EEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCC
Q 010011 112 LHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (520)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~ 190 (520)
+-++|+.++......... .......++... ++.+++.|+. ...+.++|+....-..+.. -
T Consensus 189 v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~-----------dg~i~~wd~~~~~~~~~~~------h 249 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSD--TINIWFCSLDVSASSRMVVTGDN-----------VGNVILLNMDGKELWNLRM------H 249 (435)
T ss_dssp EEEEETTSCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECS-----------SSBEEEEESSSCBCCCSBC------C
T ss_pred EEEeeccCCceeEEeccC--CCCccEEEEEECCCCCEEEEEeC-----------CCcEeeeccCcceeEEEec------c
Confidence 778898887665443211 111122233333 5677777873 2347778876543222210 0
Q ss_pred CcceeEEee---CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCC
Q 010011 191 RDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQN 265 (520)
Q Consensus 191 r~~h~~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~ 265 (520)
...-.++.+ ++.+++.|+.++ .+.+||+.+..-..... ........-.++.+ ++..++.|+.+.
T Consensus 250 ~~~v~~v~~~p~~~~~~~s~s~d~------~v~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~spdg~~l~s~~~D~--- 318 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLATASVDQ------TVKIWDLRQVRGKASFL--YSLPHRHPVNAACFSPDGARLLTTDQKS--- 318 (435)
T ss_dssp SSCEEEEEECTTCSSEEEEEETTS------BCCEEETTTCCSSSCCS--BCCBCSSCEEECCBCTTSSEEEEEESSS---
T ss_pred cceEEeeeecCCCceEEEEecCcc------eeeEEecccccccceEE--EeeeccccccceeECCCCCeeEEEcCCC---
Confidence 111122222 345777777653 35677876543111000 00000111112222 456667777543
Q ss_pred ccCcEEEEecCCCc
Q 010011 266 LYDDLYMIDVDSGL 279 (520)
Q Consensus 266 ~~~dv~~yd~~~~~ 279 (520)
.|.+||+.+..
T Consensus 319 ---~i~iwd~~~~~ 329 (435)
T 4e54_B 319 ---EIRVYSASQWD 329 (435)
T ss_dssp ---CEEEEESSSSS
T ss_pred ---EEEEEECCCCc
Confidence 38899987654
No 125
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=92.49 E-value=8.4 Score=37.53 Aligned_cols=107 Identities=10% Similarity=0.045 Sum_probs=50.1
Q ss_pred ceeEEEEcCcceEEEcccCC-CC-CCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCC--
Q 010011 166 NDLYILNTETFVWKRATTSG-NP-PSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLS-- 240 (520)
Q Consensus 166 ~~v~~~d~~t~~W~~v~~~~-~~-p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~-- 240 (520)
..+.+||+.+.+....-... .. +....-.+++. .++.+++.|+.++. ...+.+||+.+.+-...-.....+.
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC------
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC---CceEEEEECCCCcccceeccCcccccc
Confidence 45788898765533221100 00 00111122222 25667777764311 1458899987765332221000000
Q ss_pred ------CCceeEEEEE--CCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 241 ------PRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 241 ------~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
.......+.+ ++++++.|+.+ ..+.+||+.+.+-.
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWD------GKLRFWDVKTKERI 326 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCC------CeEEEEEcCCCcee
Confidence 1111222222 45667777643 34899999887543
No 126
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=92.49 E-value=9 Score=37.89 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=71.8
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~y 115 (520)
++.+..++..++.|+.+ ..+.+||..+.+-...- .+.. ..-.+++.. ++..++.|+.+ ..+.++
T Consensus 128 ~v~~s~dg~~l~s~~~d------~~i~iwd~~~~~~~~~~-~~h~---~~v~~~~~~p~~~~l~s~s~d-----~~v~iw 192 (393)
T 1erj_A 128 SVCFSPDGKFLATGAED------RLIRIWDIENRKIVMIL-QGHE---QDIYSLDYFPSGDKLVSGSGD-----RTVRIW 192 (393)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE-CCCS---SCEEEEEECTTSSEEEEEETT-----SEEEEE
T ss_pred EEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEE-ccCC---CCEEEEEEcCCCCEEEEecCC-----CcEEEE
Confidence 34443333355666643 45889999887654421 1111 111222222 44555666554 458888
Q ss_pred ECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE-cccCCCCCCCC-
Q 010011 116 DTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSAR- 191 (520)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~-v~~~~~~p~~r- 191 (520)
|+.+.+....-. ... .-.+++.. ++++++.|+.+ ..+.++|+.+..... +..........
T Consensus 193 d~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~l~~~s~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 193 DLRTGQCSLTLS---IED--GVTTVAVSPGDGKYIAAGSLD-----------RAVRVWDSETGFLVERLDSENESGTGHK 256 (393)
T ss_dssp ETTTTEEEEEEE---CSS--CEEEEEECSTTCCEEEEEETT-----------SCEEEEETTTCCEEEEEC------CCCS
T ss_pred ECCCCeeEEEEE---cCC--CcEEEEEECCCCCEEEEEcCC-----------CcEEEEECCCCcEEEeecccccCCCCCC
Confidence 998877543221 110 11122222 45677777742 347778887654322 21100000010
Q ss_pred -cceeEEe-eCCEEEEEecCCCCCcccCceEEEECCC
Q 010011 192 -DSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDT 226 (520)
Q Consensus 192 -~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t 226 (520)
.-.+++. .++.+++.|+.++ .+..||+.+
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~------~v~~wd~~~ 287 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDR------SVKLWNLQN 287 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTS------EEEEEEC--
T ss_pred CCEEEEEECCCCCEEEEEeCCC------EEEEEECCC
Confidence 1112222 2566777777553 377777754
No 127
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=92.37 E-value=9.1 Score=37.66 Aligned_cols=188 Identities=10% Similarity=0.025 Sum_probs=89.8
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEE
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 123 (520)
.+++.|+.+ ..+.+||..+.+-...- .+ ....-.+++.. ++++++.|+.+ ..+.+||+.+.+-.
T Consensus 110 ~~l~~~~~d------g~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 110 RRFILGTTE------GDIKVLDSNFNLQREID-QA---HVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDGSNP 174 (420)
T ss_dssp CEEEEEETT------SCEEEECTTSCEEEEET-TS---SSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCCC
T ss_pred CEEEEEECC------CCEEEEeCCCcceeeec-cc---ccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCcCc
Confidence 355666542 35788998877654421 01 11111222222 45566667654 35888998765421
Q ss_pred -eecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEE----
Q 010011 124 -SPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS---- 197 (520)
Q Consensus 124 -~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~---- 197 (520)
.+. + ....-.+++.. ++.+++.|+.+ ..+.++|+.+.+-...-.....+.. .-.+++
T Consensus 175 ~~~~--~---h~~~v~~~~~~~~~~~l~s~~~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 237 (420)
T 3vl1_A 175 RTLI--G---HRATVTDIAIIDRGRNVLSASLD-----------GTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFVG 237 (420)
T ss_dssp EEEE--C---CSSCEEEEEEETTTTEEEEEETT-----------SCEEEEETTTTEEEEEECBTTBTTC-CEEEEEEEEC
T ss_pred eEEc--C---CCCcEEEEEEcCCCCEEEEEcCC-----------CcEEEeECCCCceeEEeecCCCCCC-CccEEEEecC
Confidence 111 0 00111122333 45566666631 3477788776543322110000000 000111
Q ss_pred ------------------eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCE-EEEE
Q 010011 198 ------------------SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFVF 257 (520)
Q Consensus 198 ------------------~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~-iyv~ 257 (520)
..++.+++.|+.++ .+..||+.+.+-..... ......-.+++.. ++. +++.
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG------VITVHNVFSKEQTIQLP---SKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS------CEEEEETTTCCEEEEEC---CTTSSCEEEEEECSSCTTEEEE
T ss_pred CcceeeecccCcccceEEcCCCCEEEEEcCCC------eEEEEECCCCceeEEcc---cccCCCceeEEEeCCCCCEEEE
Confidence 12567777777543 38899988765333222 1111111222222 334 7777
Q ss_pred ecccCCCCccCcEEEEecCCCc
Q 010011 258 GGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
|+.+ ..+.+||+.+..
T Consensus 309 g~~d------g~i~vwd~~~~~ 324 (420)
T 3vl1_A 309 GYEN------GMLAQWDLRSPE 324 (420)
T ss_dssp EETT------SEEEEEETTCTT
T ss_pred EeCC------CeEEEEEcCCCc
Confidence 7754 348999998763
No 128
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.35 E-value=8.6 Score=37.32 Aligned_cols=226 Identities=10% Similarity=0.102 Sum_probs=111.6
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEE
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~ 114 (520)
..++...+.+.+|+.|-. ..+++-.-.-.+|+.+......+ .....++...++.+|+.|-. ..+++
T Consensus 38 ~~~v~~~~~~~~~~~G~~-------g~i~~s~DgG~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~------g~i~~ 103 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVGVN-------ATLMETRDGGQTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP------PIMLH 103 (327)
T ss_dssp EEEEEESSSSCEEEEETT-------TEEEEESSTTSSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET------TEEEE
T ss_pred EEEEEECCCCcEEEEcCC-------CeEEEeCCCCCCCeECCCCCCCC-CccEEEEEecCCeEEEEECC------CeEEE
Confidence 334445455567876632 23444433446899865211111 12234444557788887621 23444
Q ss_pred EECCCCeEEeecccCCCCCCCCCceEE-EECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcc
Q 010011 115 LDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~ 193 (520)
-+-.-.+|+.+......|.. ...++ .-++.+|+.|.. ..+++-+-.-.+|+.+.. +.+...
T Consensus 104 S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~------------g~v~~S~DgG~tW~~~~~----~~~~~~ 165 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV------------GAIYRTKDSGKNWQALVQ----EAIGVM 165 (327)
T ss_dssp ESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT------------CCEEEESSTTSSEEEEEC----SCCCCE
T ss_pred ECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC------------ccEEEEcCCCCCCEEeec----CCCcce
Confidence 22234689987632122221 22333 346788887751 135554444678999863 222233
Q ss_pred eeEEee-CCEEEEEecCCCCCcccCceEEEECC-CCcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCCCccCcE
Q 010011 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDL 270 (520)
Q Consensus 194 h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~dv 270 (520)
+.++.. ++.++++|- . ..+++-+-. ..+|+.+.. +.+...+.++. -++.+|+.+.. ..+
T Consensus 166 ~~~~~~~~~~~~~~g~-~------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~-------G~~ 227 (327)
T 2xbg_A 166 RNLNRSPSGEYVAVSS-R------GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNG-------GKI 227 (327)
T ss_dssp EEEEECTTSCEEEEET-T------SSEEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETT-------TEE
T ss_pred EEEEEcCCCcEEEEEC-C------CcEEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeCC-------ceE
Confidence 444443 556666552 2 124444333 578999864 33334444443 34677776642 124
Q ss_pred EEEecC-CCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcc
Q 010011 271 YMIDVD-SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 271 ~~yd~~-~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (520)
++.+.. ..+|+.+... ..+.. .....+.. ..++.+|+.|+
T Consensus 228 ~~s~~D~G~tW~~~~~~-~~~~~-~~~~~v~~--~~~~~~~~~g~ 268 (327)
T 2xbg_A 228 AFSDPDNSENWGELLSP-LRRNS-VGFLDLAY--RTPNEVWLAGG 268 (327)
T ss_dssp EEEETTEEEEECCCBCT-TSSCC-SCEEEEEE--SSSSCEEEEES
T ss_pred EEecCCCCCeeEeccCC-cccCC-cceEEEEe--cCCCEEEEEeC
Confidence 554322 5589876431 11111 11222222 23567787765
No 129
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.25 E-value=11 Score=40.07 Aligned_cols=202 Identities=17% Similarity=0.169 Sum_probs=103.4
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC--
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS-- 118 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~-- 118 (520)
++.+|+... ..+.+.++|..+++-... ++....-|.++.- +..+|+.+. .+.+.+||+.
T Consensus 166 ~~~~~V~~~------~~~~V~viD~~t~~v~~~-----i~~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~ 228 (567)
T 1qks_A 166 ENLFSVTLR------DAGQIALIDGSTYEIKTV-----LDTGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWMK 228 (567)
T ss_dssp GGEEEEEET------TTTEEEEEETTTCCEEEE-----EECSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSS
T ss_pred CceEEEEeC------CCCeEEEEECCCCeEEEE-----EeCCCCccceEECCCCCEEEEEcC------CCeEEEEECCCC
Confidence 456776643 235799999998765531 1222233444433 456787642 2479999995
Q ss_pred CCeEE-eecccCCCCCCCCCceEEEE-----C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE-cccCCC----
Q 010011 119 SHTWI-SPSVRGEGPEAREGHSAALV-----G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGN---- 186 (520)
Q Consensus 119 t~~W~-~~~~~g~~p~~r~~hs~~~~-----~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~-v~~~~~---- 186 (520)
+.+-. .++. |.. | ..+++. + +.+|+..- ..+.+.++|..+.+-.+ ++..+.
T Consensus 229 t~~~v~~i~~-G~~--P---~~ia~s~~~~pDGk~l~v~n~-----------~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 229 EPTTVAEIKI-GSE--A---RSIETSKMEGWEDKYAIAGAY-----------WPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp SCCEEEEEEC-CSE--E---EEEEECCSTTCTTTEEEEEEE-----------ETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred CCcEeEEEec-CCC--C---ceeEEccccCCCCCEEEEEEc-----------cCCeEEEEECCCCcEEEEEecccccccc
Confidence 54332 2221 211 1 223333 3 35666533 23567788877654332 222110
Q ss_pred ---CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCE-EEEEeccc
Q 010011 187 ---PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGFT 261 (520)
Q Consensus 187 ---~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~-iyv~GG~~ 261 (520)
.|.+|........++..+++-=. ..+.++..|..+.....+.. .+..+.-|..... +++ +|+....
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~~- 362 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAANA- 362 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEGG-
T ss_pred ccccCCCceEEEEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeee---eeccccccCceECCCCCEEEEEeCC-
Confidence 12334443333333333333211 23568888887765544443 3445555654443 233 4443322
Q ss_pred CCCCccCcEEEEecCCCcEEEeeeC-CCCCCC
Q 010011 262 DSQNLYDDLYMIDVDSGLWTKVITT-GEGPSA 292 (520)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~-~~~p~~ 292 (520)
.+.|.++|.++++-....+. +..|.+
T Consensus 363 -----sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 363 -----RNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp -----GTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred -----CCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 35699999999875544455 555554
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=92.18 E-value=12 Score=39.36 Aligned_cols=220 Identities=16% Similarity=0.141 Sum_probs=106.4
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEEC--C
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDT--S 118 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~--~ 118 (520)
++.+|+.+.. .+.+.++|..+++-...-..+. .-|+++.- +..||+.+. + +.+.+||+ .
T Consensus 148 ~~~~~vs~~~------d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~ 210 (543)
T 1nir_A 148 PNLFSVTLRD------AGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGR-D-----ARIDMIDLWAK 210 (543)
T ss_dssp GGEEEEEEGG------GTEEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEET-T-----SEEEEEETTSS
T ss_pred CCEEEEEEcC------CCeEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEECC-C-----CeEEEEECcCC
Confidence 4567776543 2568889998876544211121 23444333 345666652 2 67999999 6
Q ss_pred CCeEEe-ecccCCCCCCCCCceEEEE-----CC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE-cccCCC----
Q 010011 119 SHTWIS-PSVRGEGPEAREGHSAALV-----GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGN---- 186 (520)
Q Consensus 119 t~~W~~-~~~~g~~p~~r~~hs~~~~-----~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~-v~~~~~---- 186 (520)
+.+-.. ++ .+ ..-+.+++. ++ .+|+. ++ ..+.+.++|..+.+-.. +...+.
T Consensus 211 t~~~~~~i~-~g-----~~p~~va~sp~~~~dg~~l~v~-~~----------~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 211 EPTKVAEIK-IG-----IEARSVESSKFKGYEDRYTIAG-AY----------WPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp SCEEEEEEE-CC-----SEEEEEEECCSTTCTTTEEEEE-EE----------ESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred CCcEEEEEe-cC-----CCcceEEeCCCcCCCCCEEEEE-Ec----------cCCeEEEEeccccccceeecccCcccCc
Confidence 665432 22 11 111233332 34 45554 31 13557788887754332 222111
Q ss_pred ---CCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCE-EEEEecc
Q 010011 187 ---PPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGF 260 (520)
Q Consensus 187 ---~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~-iyv~GG~ 260 (520)
.|.+|........ ++.+|+.... .+.++.+|..+.+-..+.. .+..+.-+..... +++ +|+.+..
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~va~~~ 344 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMTAANN 344 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEEEEGG
T ss_pred cccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEEEecC
Confidence 1223333333333 4455554432 2468889987643211111 1112223333333 344 4444332
Q ss_pred cCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcc
Q 010011 261 TDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 261 ~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (520)
.+.|.++|.++++-......+..|.+..... +. ...++.+|+.+.
T Consensus 345 ------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--~~-~p~~g~~~~s~~ 389 (543)
T 1nir_A 345 ------SNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--FV-HPKYGPVWSTSH 389 (543)
T ss_dssp ------GTEEEEEETTTTEEEEEEECSSSBCCTTCEE--EE-ETTTEEEEEEEB
T ss_pred ------CCeEEEEECCCCeEEEeeccCCCCCCCCCcc--cC-CCCCccEEEecc
Confidence 2458899999987655444444444322211 11 133467777664
No 131
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=92.07 E-value=5.3 Score=37.63 Aligned_cols=146 Identities=10% Similarity=0.090 Sum_probs=72.8
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEc-ccCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA-TTSGN 186 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v-~~~~~ 186 (520)
..+++||+.+.++..............-++++.. + ++||+... .+.+++||++ .+...+ .....
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~------------~~~l~~~d~~-g~~~~~~~~~~~ 112 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM------------RLGLLVVQTD-GTFEEIAKKDSE 112 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET------------TTEEEEEETT-SCEEECCSBCTT
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC------------CCCEEEEeCC-CCEEEEEeccCC
Confidence 4689999888888654420000011112233333 4 68888754 1358899998 776665 32111
Q ss_pred CCCCCcceeEEe-eCCEEEEEecCCC---------CCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE----C-
Q 010011 187 PPSARDSHTCSS-WKNKIIVIGGEDG---------HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF----G- 251 (520)
Q Consensus 187 ~p~~r~~h~~~~-~~~~lyv~GG~~~---------~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~----~- 251 (520)
......-..++. .++.+|+...... .......+++||+. .+...+... ... -...+.. .
T Consensus 113 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~---~~~i~~~~~~d~d 186 (314)
T 1pjx_A 113 GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQF---PNGIAVRHMNDGR 186 (314)
T ss_dssp SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESS---EEEEEEEECTTSC
T ss_pred CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCC---cceEEEecccCCC
Confidence 111111122333 3677887654321 11123568999987 555554321 111 1223333 2
Q ss_pred C-EEEEEecccCCCCccCcEEEEecC-CCcE
Q 010011 252 K-NLFVFGGFTDSQNLYDDLYMIDVD-SGLW 280 (520)
Q Consensus 252 ~-~iyv~GG~~~~~~~~~dv~~yd~~-~~~W 280 (520)
+ .+|+.... .+.+++||++ ++.+
T Consensus 187 g~~l~v~~~~------~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 187 PYQLIVAETP------TKKLWSYDIKGPAKI 211 (314)
T ss_dssp EEEEEEEETT------TTEEEEEEEEETTEE
T ss_pred CCEEEEEECC------CCeEEEEECCCCCcc
Confidence 3 46665432 2458999976 4544
No 132
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=92.01 E-value=8.7 Score=37.42 Aligned_cols=187 Identities=7% Similarity=-0.010 Sum_probs=94.6
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
.+++.|+.+ ..+.+||..+.+....... ......-.+++.. ++.+++.|+.+ ..+.++|+.+...
T Consensus 87 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 87 TTVAVGSKG------GDIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVI 153 (383)
T ss_dssp TEEEEEEBT------SCEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEE
T ss_pred CEEEEEcCC------CeEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCce
Confidence 466667643 3588999988776653210 0111111223333 34677777654 3588899988766
Q ss_pred EeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-C
Q 010011 123 ISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-K 200 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~ 200 (520)
...... ......-.+++.. ++.+++.|+. ...+.++|+.......+... ...-.+++.. +
T Consensus 154 ~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~ 215 (383)
T 3ei3_B 154 QVFAKT--DSWDYWYCCVDVSVSRQMLATGDS-----------TGRLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPR 215 (383)
T ss_dssp EEEECC--CCSSCCEEEEEEETTTTEEEEEET-----------TSEEEEEETTSCEEEEEECS-----SSCEEEEEECSS
T ss_pred EEEecc--CCCCCCeEEEEECCCCCEEEEECC-----------CCCEEEEECCCCEEEEeccC-----CCcEEEEEECCC
Confidence 554421 1111111222222 4566676763 24678888865544444311 1111222222 3
Q ss_pred CE-EEEEecCCCCCcccCceEEEECCC----CcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEE
Q 010011 201 NK-IIVIGGEDGHDYYLSDVHILDTDT----LTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMI 273 (520)
Q Consensus 201 ~~-lyv~GG~~~~~~~~~~i~~yd~~t----~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~y 273 (520)
+. +++.|+.++ .+.+||+.+ ........ ....-.++... ++++++.|+.+ ..+.+|
T Consensus 216 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d------~~i~iw 278 (383)
T 3ei3_B 216 CDWLMATSSVDA------TVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQR------NEIRVY 278 (383)
T ss_dssp CTTEEEEEETTS------EEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESS------SEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCC------CcEEEE
Confidence 44 777777543 478888876 33322211 11111122222 45677777653 348899
Q ss_pred ecCCCc
Q 010011 274 DVDSGL 279 (520)
Q Consensus 274 d~~~~~ 279 (520)
|+.+..
T Consensus 279 d~~~~~ 284 (383)
T 3ei3_B 279 SSYDWS 284 (383)
T ss_dssp ETTBTT
T ss_pred ECCCCc
Confidence 987654
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.95 E-value=6.6 Score=37.06 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=95.5
Q ss_pred EEEEcCCCEEEEEcCc---CCCCC--CcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-C-CEEEEEcCCCCCCCC
Q 010011 37 CNAIKGGRFLYVFGGY---GKDNC--QTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-G-ENLYVFGGTDGMNPL 109 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~---~~~~~--~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~iyv~GG~~~~~~~ 109 (520)
....+++++||+.... ..... ..+.+++||..+.+....-..+. .-+.++.. + ..||+.+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~-------- 153 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGLG-------- 153 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEES--------
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEeC--------
Confidence 3444567777776421 01100 12679999998877654221121 12223322 3 3477662
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCC------------CCCCCCcceeceeEEEEcCcce
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGK------------SSNTNDEVYYNDLYILNTETFV 177 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~------------~~~~~~~~~~~~v~~~d~~t~~ 177 (520)
..++++|+.+.+-...-..+..+.+. .....+..+|+.+.... ............++++|+.+.+
T Consensus 154 ~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 154 RDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp SSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred CeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 46999999988754322111111111 11111222333221100 0000001122368899998876
Q ss_pred EEEcccCCCCCCCCcceeEEee-CC-EEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CC-E
Q 010011 178 WKRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK-N 253 (520)
Q Consensus 178 W~~v~~~~~~p~~r~~h~~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~-~ 253 (520)
-..+... +.......++.. ++ .+|+. .+.+++||+++.+-...-..+ ..-.+++.. ++ .
T Consensus 231 ~~~~~~~---~~~~~~~~~~~s~dg~~l~~~---------~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 231 MAMREVR---IMDVFYFSTAVNPAKTRAFGA---------YNVLESFDLEKNASIKRVPLP-----HSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEE---ECSSCEEEEEECTTSSEEEEE---------ESEEEEEETTTTEEEEEEECS-----SCCCEEEECTTSCE
T ss_pred ceEeecC---CCCCceeeEEECCCCCEEEEe---------CCeEEEEECCCCcCcceecCC-----CceeeEEECCCCCE
Confidence 5433211 111112223322 33 45544 156999999887654332211 111233333 34 4
Q ss_pred EEEEecccCCCCccCcEEEEecCCCcEEE
Q 010011 254 LFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 254 iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (520)
+|+ ++. .+.+.+||+++.+-..
T Consensus 294 l~~-~~~------~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 294 VWL-GGA------LGDLAAYDAETLEKKG 315 (337)
T ss_dssp EEE-ESB------SSEEEEEETTTCCEEE
T ss_pred EEE-EcC------CCcEEEEECcCCcEEE
Confidence 555 433 2459999998875443
No 134
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.93 E-value=17 Score=39.72 Aligned_cols=180 Identities=15% Similarity=0.109 Sum_probs=95.3
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecc-cCCCCCCCCCc
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSV-RGEGPEAREGH 138 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~-~g~~p~~r~~h 138 (520)
+-+++||..+.++.... ...+ ..-.+++..++.|+|.. .+.+++||+.+.+++.... ...++.. .-.
T Consensus 82 ~Gl~~yd~~~~~f~~~~--~~~~--~~i~~i~~~~g~lWigt-------~~Gl~~~~~~~~~~~~~~~~~~~l~~~-~i~ 149 (758)
T 3ott_A 82 NGILVYNYRADRYEQPE--TDFP--TDVRTMALQGDTLWLGA-------LNGLYTYQLQSRKLTSFDTRRNGLPNN-TIY 149 (758)
T ss_dssp TEEEEEETTTTEECCCS--CCCC--SCEEEEEEETTEEEEEE-------TTEEEEEETTTCCEEEECHHHHCCSCS-CEE
T ss_pred CCeEEEeCCCCEEECcc--cCCC--ceEEEEEecCCcEEEEc-------CCcceeEeCCCCeEEEeccCCCCcCCC-eEE
Confidence 34789999998876521 1111 11122334477888753 1368999999988876521 1112221 111
Q ss_pred eEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC-CCCcceeEEee--CCEEEEEecCCCCCc
Q 010011 139 SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP-SARDSHTCSSW--KNKIIVIGGEDGHDY 214 (520)
Q Consensus 139 s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p-~~r~~h~~~~~--~~~lyv~GG~~~~~~ 214 (520)
+++.. ++.|+|... +.+++||+.+.+++......... ....-.++... ++.|+|- - .
T Consensus 150 ~i~~d~~g~lWigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWig-t-~---- 210 (758)
T 3ott_A 150 SIIRTKDNQIYVGTY-------------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIG-T-E---- 210 (758)
T ss_dssp EEEECTTCCEEEEET-------------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEE-E-E----
T ss_pred EEEEcCCCCEEEEeC-------------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEE-E-C----
Confidence 22222 467887321 35889999888877654211100 11112233333 2456762 1 1
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEEee
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
..+++||+.+.++..... ++.. .-.+++.. ++.|+| |-. +.+++||..+..+..+.
T Consensus 211 --~Gl~~~~~~~~~~~~~~~---l~~~-~i~~i~~d~~g~lWi-gT~-------~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 211 --GYLFQYFPSTGQIKQTEA---FHNN-SIKSLALDGNGDLLA-GTD-------NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp --EEEEEEETTTTEEEEEEE---EEEE-EEEEEEECTTCCEEE-EET-------TEEEEECCTTSCCEEEC
T ss_pred --CCCeEEcCCCCeEEeccC---CCCC-eEEEEEEcCCCCEEE-EeC-------CceeEEecCCCcEEEEE
Confidence 248899999988876542 2111 11122222 345665 321 23889999888877664
No 135
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=91.89 E-value=10 Score=37.26 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=66.3
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEE--ECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
..+.+||..+.+-.. ..... ....+.. .++++++.|+.+ ..+.+||+.+..-...- . .....-
T Consensus 78 ~~v~i~d~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~-~---~h~~~v 142 (420)
T 3vl1_A 78 GHDFLFNTIIRDGSK-----MLKRA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNFNLQREID-Q---AHVSEI 142 (420)
T ss_dssp TEEEEEECCSEETTT-----TSCSC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTTSCEEEEET-T---SSSSCE
T ss_pred CcEEEEEecccceee-----EEecC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCCCcceeeec-c---cccCcc
Confidence 468888876544222 11111 1112222 256677777654 35888898876644321 0 111111
Q ss_pred ceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE-EEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCc
Q 010011 138 HSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDY 214 (520)
Q Consensus 138 hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W-~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~ 214 (520)
.+++.. ++.+++.|+. ...+.+||+.+.+- ..+.. ....-.+++.. ++.+++.|+.++
T Consensus 143 ~~~~~~~~~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~--- 203 (420)
T 3vl1_A 143 TKLKFFPSGEALISSSQ-----------DMQLKIWSVKDGSNPRTLIG-----HRATVTDIAIIDRGRNVLSASLDG--- 203 (420)
T ss_dssp EEEEECTTSSEEEEEET-----------TSEEEEEETTTCCCCEEEEC-----CSSCEEEEEEETTTTEEEEEETTS---
T ss_pred EEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCcCceEEcC-----CCCcEEEEEEcCCCCEEEEEcCCC---
Confidence 222222 4556666763 24578888875431 11110 01111222222 566677777543
Q ss_pred ccCceEEEECCCCcEE
Q 010011 215 YLSDVHILDTDTLTWK 230 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~ 230 (520)
.+..||+.+.+-.
T Consensus 204 ---~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 204 ---TIRLWECGTGTTI 216 (420)
T ss_dssp ---CEEEEETTTTEEE
T ss_pred ---cEEEeECCCCcee
Confidence 4788898876543
No 136
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=91.84 E-value=8 Score=35.85 Aligned_cols=197 Identities=5% Similarity=-0.049 Sum_probs=102.6
Q ss_pred EEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEE
Q 010011 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~ 114 (520)
.++++..++.||+.... ...+.+||+. +.+....... ....-++++.. ++.+|+.... ...+++
T Consensus 18 ~~i~~d~~g~l~v~~~~------~~~v~~~d~~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~ 82 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHK------ANMISCINLD-GKITEYPLPT---PDAKVMCLTISSDGEVWFTENA-----ANKIGR 82 (299)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECTT-CCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEE
T ss_pred cceEECCCCCEEEEecC------CCcEEEEcCC-CCeEEecCCc---ccCceeeEEECCCCCEEEeCCC-----CCeEEE
Confidence 34444434457775321 2468999998 7777654211 11222333332 5678887532 235889
Q ss_pred EECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcc
Q 010011 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~ 193 (520)
||+. .++....... ....-++++.. ++++|+.... ...++++|+ +.+........ ....-
T Consensus 83 ~~~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~~~~~~~~---~~~~~ 143 (299)
T 2z2n_A 83 ITKK-GIIKEYTLPN---PDSAPYGITEGPNGDIWFTEMN-----------GNRIGRITD-DGKIREYELPN---KGSYP 143 (299)
T ss_dssp ECTT-SCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----------TTEEEEECT-TCCEEEEECSS---TTCCE
T ss_pred ECCC-CcEEEEeCCC---cCCCceeeEECCCCCEEEEecC-----------CceEEEECC-CCCEEEecCCC---CCCCC
Confidence 9886 4554443110 11122334433 4678886542 245788888 55555443211 11122
Q ss_pred eeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEE
Q 010011 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (520)
Q Consensus 194 h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~ 271 (520)
..++.. ++.+|+.... .+.+++||+ +.+...+.... ....-..++.. ++++|+.... .+.++
T Consensus 144 ~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~ 207 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEII------GNKIG 207 (299)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETT------TTEEE
T ss_pred ceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccC------CceEE
Confidence 333333 5678876421 245899999 77777653311 11111223332 4567776532 23589
Q ss_pred EEecCCCcEEEe
Q 010011 272 MIDVDSGLWTKV 283 (520)
Q Consensus 272 ~yd~~~~~W~~l 283 (520)
+||+ ++.+..+
T Consensus 208 ~~~~-~g~~~~~ 218 (299)
T 2z2n_A 208 RITT-SGEITEF 218 (299)
T ss_dssp EECT-TCCEEEE
T ss_pred EECC-CCcEEEE
Confidence 9999 7777655
No 137
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=91.78 E-value=8.6 Score=36.11 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=91.4
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-C-CEEEEEcCCCCCCCCCcEEEEECCCCeEEee-cccCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-G-ENLYVFGGTDGMNPLRDLHILDTSSHTWISP-SVRGEGPEARE 136 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~g~~p~~r~ 136 (520)
..+++||+.++++..+...........-++++.. + ++||+.... +.+++||+. .+.... ...........
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 118 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD-GTFEEIAKKDSEGRRMQG 118 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-SCEEECCSBCTTSCBCBC
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-CCEEEEEeccCCCccccC
Confidence 4689999989888765420000011112333333 4 688887641 369999998 776654 31111111111
Q ss_pred CceEEEE-CCEEEEEeCCCCC----CCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-----CC-EEEE
Q 010011 137 GHSAALV-GKRLFIFGGCGKS----SNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-----KN-KIIV 205 (520)
Q Consensus 137 ~hs~~~~-~~~lyv~GG~~~~----~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-----~~-~lyv 205 (520)
-+.++.. ++++|+....... ...........++++|+. .+...+...... ...++.. ++ .+|+
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-----~~~i~~~~~~d~dg~~l~v 192 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF-----PNGIAVRHMNDGRPYQLIV 192 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS-----EEEEEEEECTTSCEEEEEE
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC-----cceEEEecccCCCCCEEEE
Confidence 2233332 5678876542100 000011123578999886 555444211011 1223332 33 4666
Q ss_pred EecCCCCCcccCceEEEECC-CCcEEEeeCCCCCCCC--CceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 206 IGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSP--RAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~-t~~W~~~~~~~~~p~~--R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.... .+.+++||++ +.++.........+.. ..-..++.. ++.+|+..... +.|.+||+++..
T Consensus 193 ~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~------~~i~~~d~~~g~ 258 (314)
T 1pjx_A 193 AETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQ 258 (314)
T ss_dssp EETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT------TEEEEECTTCBS
T ss_pred EECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC------CEEEEEcCCCCc
Confidence 6432 2458888875 4443321110001111 111222322 46777764321 348999988544
No 138
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=91.74 E-value=7.1 Score=38.29 Aligned_cols=204 Identities=9% Similarity=0.033 Sum_probs=92.0
Q ss_pred CCCEEEEEcCcCCCC----CCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 010011 42 GGRFLYVFGGYGKDN----CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~----~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~y 115 (520)
++..+++.|...... .....+.+||..+..-.++. ...... ....+..+ ++.+++.|+.+ ..+.+|
T Consensus 23 ~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~v~vw 94 (416)
T 2pm9_A 23 DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--ASLQVD-SKFNDLDWSHNNKIIAGALDN-----GSLELY 94 (416)
T ss_dssp SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--CCCCCS-SCEEEEEECSSSSCEEEEESS-----SCEEEE
T ss_pred CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--EEEecC-CceEEEEECCCCCeEEEEccC-----CeEEEe
Confidence 344366677442210 12346888998876432111 011111 11222222 45566666653 357888
Q ss_pred ECCC----C-eEEeecccCCCCCCCCCceEEEE-C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE-----EEccc
Q 010011 116 DTSS----H-TWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-----KRATT 183 (520)
Q Consensus 116 d~~t----~-~W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W-----~~v~~ 183 (520)
|+.+ . .-..+. . ....-.++... + +.+++.|+. ...+.++|+.+..- .....
T Consensus 95 ~~~~~~~~~~~~~~~~---~--h~~~v~~~~~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~ 158 (416)
T 2pm9_A 95 STNEANNAINSMARFS---N--HSSSVKTVKFNAKQDNVLASGGN-----------NGEIFIWDMNKCTESPSNYTPLTP 158 (416)
T ss_dssp CCSSTTSCCCEEEECC---C--SSSCCCEEEECSSSTTBEEEECS-----------SSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred ecccccccccchhhcc---C--CccceEEEEEcCCCCCEEEEEcC-----------CCeEEEEECCCCcccccccccccc
Confidence 8776 1 222211 1 11111223333 2 567777773 23467777765530 00100
Q ss_pred CCCCCCCCcceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCC--CCceeEEEEEC--CEEEEE
Q 010011 184 SGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLS--PRAGHSTVAFG--KNLFVF 257 (520)
Q Consensus 184 ~~~~p~~r~~h~~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~--~R~~hs~~~~~--~~iyv~ 257 (520)
.........-.++... + +.+++.|+.++ .+.+||+.+.+....-....... ...-.++.... ..+++.
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSN------FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 0000111111222222 3 56778877543 48899998876544332110000 11122233332 247777
Q ss_pred ecccCCCCccCcEEEEecCCC
Q 010011 258 GGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~ 278 (520)
|+.... ...+.+||+.+.
T Consensus 233 ~~~d~~---~~~i~~~d~~~~ 250 (416)
T 2pm9_A 233 ATGSDN---DPSILIWDLRNA 250 (416)
T ss_dssp EECCSS---SCCCCEEETTST
T ss_pred EECCCC---CceEEEEeCCCC
Confidence 765421 124888998875
No 139
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=91.64 E-value=8.5 Score=38.82 Aligned_cols=160 Identities=9% Similarity=0.000 Sum_probs=77.3
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcC
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE 174 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~ 174 (520)
+++++.|+.+ ..+.+||+.+......-..+. .... .+++..++.+++.|+. ...+.++|+.
T Consensus 210 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h--~~~v-~~~~~sd~~~l~s~~~-----------d~~v~vwd~~ 270 (450)
T 2vdu_B 210 HQFIITSDRD-----EHIKISHYPQCFIVDKWLFGH--KHFV-SSICCGKDYLLLSAGG-----------DDKIFAWDWK 270 (450)
T ss_dssp CEEEEEEETT-----SCEEEEEESCTTCEEEECCCC--SSCE-EEEEECSTTEEEEEES-----------SSEEEEEETT
T ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeeeecCC--CCce-EEEEECCCCEEEEEeC-----------CCeEEEEECC
Confidence 7788888764 358888887665332111111 1111 1222225666677763 2467888887
Q ss_pred cceEEEcccCCC-----------C----------CCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEEC--C-CCcE
Q 010011 175 TFVWKRATTSGN-----------P----------PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDT--D-TLTW 229 (520)
Q Consensus 175 t~~W~~v~~~~~-----------~----------p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~--~-t~~W 229 (520)
+.+....-.... . ........++.. ++.++++++... +.+.+||+ . ..++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l 345 (450)
T 2vdu_B 271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDL 345 (450)
T ss_dssp TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCE
T ss_pred CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCce
Confidence 765332211000 0 001111122222 344444444221 34777877 3 3445
Q ss_pred EEeeCCCCCCCCCceeEEEEECCEEEEEecccCCC---CccCcEEEEecCCCcEE
Q 010011 230 KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ---NLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 230 ~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~---~~~~dv~~yd~~~~~W~ 281 (520)
..+.. ......-.+++...+.+++..+..+.. ...-.+|.++.+++.|.
T Consensus 346 ~~~~~---~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 346 ALKQI---ITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEE---EECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred eeccE---eccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 55543 222222334555667777776653211 11225777788888886
No 140
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=91.64 E-value=17 Score=39.24 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=98.8
Q ss_pred cCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCE-EEEEcCCCCCCCCCcEEEEECCC------C--eEEeeccc
Q 010011 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGEN-LYVFGGTDGMNPLRDLHILDTSS------H--TWISPSVR 128 (520)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~-iyv~GG~~~~~~~~~~~~yd~~t------~--~W~~~~~~ 128 (520)
...++++++.+.......+......+....+... -+++ |++... .+....+++|++|+.+ . .+..+...
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~ 285 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR-EGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE-CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE-ccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence 3458888888765321111111111222222222 2444 444432 2222257899999876 4 57666421
Q ss_pred CCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc---eEEEcccCCCCCCCCcceeEEee-CCEEE
Q 010011 129 GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF---VWKRATTSGNPPSARDSHTCSSW-KNKII 204 (520)
Q Consensus 129 g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~---~W~~v~~~~~~p~~r~~h~~~~~-~~~ly 204 (520)
.... .......++.||+.+... .....++++|+.+. .|+.+.... ....-..+... ++.++
T Consensus 286 ---~~~~-~~~~s~dg~~l~~~s~~~--------~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 286 ---FEGE-YDYVTNEGTVFTFKTNRH--------SPNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSNFLV 350 (710)
T ss_dssp ---SSSC-EEEEEEETTEEEEEECTT--------CTTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTTEEE
T ss_pred ---CCcE-EEEEeccCCEEEEEECCC--------CCCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCCEEE
Confidence 1111 112233467888886631 11356889998765 588775221 11122233444 67777
Q ss_pred EEecCCCCCcccCceEEEECCCCc-EEEeeCCCCCCCCCceeEEEEE--C-CEEEEE-ecccCCCCccCcEEEEecCCCc
Q 010011 205 VIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF--G-KNLFVF-GGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 205 v~GG~~~~~~~~~~i~~yd~~t~~-W~~~~~~~~~p~~R~~hs~~~~--~-~~iyv~-GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
+....++ ...++.+|+.+++ ...+.. + . .....+.. + +.+++. .+.. ....+|.||+.+++
T Consensus 351 ~~~~~~g----~~~l~~~~~~~g~~~~~l~~----~-~-~~v~~~~~s~d~~~l~~~~ss~~----~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 351 LCYLHDV----KNTLQLHDLATGALLKIFPL----E-V-GSVVGYSGQKKDTEIFYQFTSFL----SPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETT----EEEEEEEETTTCCEEEEECC----C-S-SEEEEEECCTTCSEEEEEEECSS----CCCEEEEEETTSSS
T ss_pred EEEEECC----EEEEEEEECCCCCEEEecCC----C-C-ceEEEEecCCCCCEEEEEEeCCC----CCCEEEEEECCCCc
Confidence 7765433 3468999986554 445432 2 1 11112222 2 344433 2322 23569999998877
Q ss_pred --EEEeee
Q 010011 280 --WTKVIT 285 (520)
Q Consensus 280 --W~~l~~ 285 (520)
++.+..
T Consensus 417 ~~~~~l~~ 424 (710)
T 2xdw_A 417 LEPRVFRE 424 (710)
T ss_dssp CCCEEEEE
T ss_pred cceEEeee
Confidence 666544
No 141
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=91.59 E-value=7.6 Score=37.95 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=86.2
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE---CCEEEEEcCCCCCCCCCcEEEEEC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
++++ .++.|+.+ ..+.++|+.+++-...- .+. ...-.++.+ +..+++.|+.++ .+.++|+
T Consensus 137 pdg~-~l~sgs~d------~~i~iwd~~~~~~~~~~-~~h----~~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~ 199 (344)
T 4gqb_B 137 SSGT-QAVSGSKD------ICIKVWDLAQQVVLSSY-RAH----AAQVTCVAASPHKDSVFLSCSEDN-----RILLWDT 199 (344)
T ss_dssp TTSS-EEEEEETT------SCEEEEETTTTEEEEEE-CCC----SSCEEEEEECSSCTTEEEEEETTS-----CEEEEET
T ss_pred CCCC-EEEEEeCC------CeEEEEECCCCcEEEEE-cCc----CCceEEEEecCCCCCceeeecccc-----ccccccc
Confidence 3444 45556543 34788898887644321 111 111112222 335777777653 4788898
Q ss_pred CCCeEEeecccCCCCCCCCCc-eEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE-EEcccCCCCCCCCcc
Q 010011 118 SSHTWISPSVRGEGPEAREGH-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSARDS 193 (520)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~h-s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W-~~v~~~~~~p~~r~~ 193 (520)
.+.+-...- ......... +++.. ++++++.|+. ...+.++|+.+.+- ..+.. ....-
T Consensus 200 ~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~-----------dg~v~~wd~~~~~~~~~~~~-----h~~~v 260 (344)
T 4gqb_B 200 RCPKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDE-----------NGTVSLVDTKSTSCVLSSAV-----HSQCV 260 (344)
T ss_dssp TSSSCEEEC---C----CCCEEEEEECSSCTTEEEEEET-----------TSEEEEEESCC--CCEEEEC-----CSSCE
T ss_pred cccceeeee---ecceeeccceeeeecCCCCcceEEecc-----------CCcEEEEECCCCcEEEEEcC-----CCCCE
Confidence 876532211 001111111 22222 3567787773 23477788765431 11110 01111
Q ss_pred eeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCc
Q 010011 194 HTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDD 269 (520)
Q Consensus 194 h~~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~d 269 (520)
.+++.. + .++++.|+.++ .+.+||..+.+-..+.. ....-.+++.. +..+++-||.+. .
T Consensus 261 ~~v~fsp~g~~~lasgs~D~------~i~vwd~~~~~~~~~~~-----H~~~V~~v~~sp~~~~llas~s~D~------~ 323 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDC------SLAVLDSSLSELFRSQA-----HRDFVRDATWSPLNHSLLTTVGWDH------Q 323 (344)
T ss_dssp EEEEECSSSSCCEEEEETTS------CEEEECTTCCEEEEECC-----CSSCEEEEEECSSSTTEEEEEETTS------C
T ss_pred EEEEEccCCCeEEEEEeCCC------eEEEEECCCCcEEEEcC-----CCCCEEEEEEeCCCCeEEEEEcCCC------e
Confidence 122221 3 35677777553 37888988775433221 11111122222 345777777643 2
Q ss_pred EEEEecCCC
Q 010011 270 LYMIDVDSG 278 (520)
Q Consensus 270 v~~yd~~~~ 278 (520)
|.++++.+.
T Consensus 324 v~~w~v~~~ 332 (344)
T 4gqb_B 324 VVHHVVPTE 332 (344)
T ss_dssp EEEEECCC-
T ss_pred EEEEECCCC
Confidence 677776653
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=91.56 E-value=9.3 Score=41.26 Aligned_cols=111 Identities=8% Similarity=-0.024 Sum_probs=54.2
Q ss_pred ceeEEEEcCc-ceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCC-CCCc
Q 010011 166 NDLYILNTET-FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL-SPRA 243 (520)
Q Consensus 166 ~~v~~~d~~t-~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p-~~R~ 243 (520)
..++++|+.+ .+-..+... .........++.-+++.++++..+... ...+++.+|+.+.+...+....... ....
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSRDQ-KKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEETTS-SEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred eEEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEecccC-CeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 3788889887 765554321 011111111111344444443321111 2457999999998877664311000 0011
Q ss_pred eeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEee
Q 010011 244 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 244 ~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
...+..-++++++.++..+ ...||.+|.+.. +..+.
T Consensus 340 ~~~~~spdg~~~~~~~~~g----~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTG----FQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp SCCEECTTSCEEEEECTTS----SCEEEEECSSSC-EEESC
T ss_pred CceEECCCCeEEEEecCCC----ccEEEEEcCCCC-eeeee
Confidence 1223333566666554322 356899997766 55543
No 143
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=91.54 E-value=9.5 Score=36.14 Aligned_cols=187 Identities=9% Similarity=0.061 Sum_probs=87.3
Q ss_pred EcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe----EEeeeccCCCCCCCCcceEEE-ECCE-EEEEcCCCCCCCCCcEE
Q 010011 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT----WSQPVIKGSPPTPRDSHSCTT-VGEN-LYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 40 v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~----W~~l~~~g~~P~~R~~hs~~~-~~~~-iyv~GG~~~~~~~~~~~ 113 (520)
.++++ +++.|+.+ ..+.+||..+.. ...+. .....-.+++. -+++ +++.|+.+ ..+.
T Consensus 20 s~~~~-~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~ 82 (342)
T 1yfq_A 20 IPSKS-LLLITSWD------GSLTVYKFDIQAKNVDLLQSL-----RYKHPLLCCNFIDNTDLQIYVGTVQ-----GEIL 82 (342)
T ss_dssp EGGGT-EEEEEETT------SEEEEEEEETTTTEEEEEEEE-----ECSSCEEEEEEEESSSEEEEEEETT-----SCEE
T ss_pred cCCCC-EEEEEcCC------CeEEEEEeCCCCccccceeee-----ecCCceEEEEECCCCCcEEEEEcCC-----CeEE
Confidence 34555 44555532 457788877665 33321 11111122222 2566 66777654 3689
Q ss_pred EEEC-CCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce-------EEEcccCC
Q 010011 114 ILDT-SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-------WKRATTSG 185 (520)
Q Consensus 114 ~yd~-~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~-------W~~v~~~~ 185 (520)
+||+ .+.....+.. .+....-.++....+.+++.|+. ...+.++|+.+.. .+.+..
T Consensus 83 ~wd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~-- 146 (342)
T 1yfq_A 83 KVDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASW-----------DGLIEVIDPRNYGDGVIAVKNLNSNN-- 146 (342)
T ss_dssp EECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEET-----------TSEEEEECHHHHTTBCEEEEESCSSS--
T ss_pred EEEeccCCceEeccc---cCCCCceEEEEeCCCCEEEEEcC-----------CCeEEEEcccccccccccccCCeeeE--
Confidence 9998 8776644431 00111112233333556666663 2456777765410 111221
Q ss_pred CCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCC-Cc--EEEeeCCCCCCCCCceeEEEEE--CCEEEEEecc
Q 010011 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LT--WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGF 260 (520)
Q Consensus 186 ~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~--W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~ 260 (520)
......-.++....+. ++.|+.+ ..+..||+.+ .. ...... +....-.++... ++++++.|+.
T Consensus 147 -~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 147 -TKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES----GLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp -SSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC----SCSSCEEEEEECSGGGCEEEEEET
T ss_pred -EeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec----CCCCceeEEEECCCCCCEEEEEec
Confidence 1122222333334555 5565543 3588899877 33 322222 111112223333 4567777775
Q ss_pred cCCCCccCcEEEEecCC
Q 010011 261 TDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 261 ~~~~~~~~dv~~yd~~~ 277 (520)
.+ .+.+||...
T Consensus 215 dg------~i~i~~~~~ 225 (342)
T 1yfq_A 215 DG------RVAVEFFDD 225 (342)
T ss_dssp TS------EEEEEECCT
T ss_pred CC------cEEEEEEcC
Confidence 32 355655544
No 144
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.45 E-value=13 Score=37.37 Aligned_cols=146 Identities=13% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
++ +++.|+.+ ..+.+||..+.+-...- .+ .. ..-.+++.. ++..++.|+.+ ..+.+||+.+.+
T Consensus 280 ~~-~l~~~~~d------~~i~vwd~~~~~~~~~~-~~--~~-~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~ 343 (464)
T 3v7d_B 280 GN-IVVSGSYD------NTLIVWDVAQMKCLYIL-SG--HT-DRIYSTIYDHERKRCISASMD-----TTIRIWDLENGE 343 (464)
T ss_dssp TT-EEEEEETT------SCEEEEETTTTEEEEEE-CC--CS-SCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTE
T ss_pred CC-EEEEEeCC------CeEEEEECCCCcEEEEe-cC--CC-CCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence 44 45556533 35889999877654321 11 11 111222222 45566667654 358999998876
Q ss_pred EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCC
Q 010011 122 WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKN 201 (520)
Q Consensus 122 W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~ 201 (520)
-...- ........+....+..++.|+. ...+.++|+.+..-..... ........+...++
T Consensus 344 ~~~~~-----~~h~~~v~~~~~~~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 344 LMYTL-----QGHTALVGLLRLSDKFLVSAAA-----------DGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSD 403 (464)
T ss_dssp EEEEE-----CCCSSCEEEEEECSSEEEEEET-----------TSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECS
T ss_pred EEEEE-----eCCCCcEEEEEEcCCEEEEEeC-----------CCcEEEEECCCCceeeeec----CCCCccEEEEEeCC
Confidence 43211 1111222344445666666663 2457788887654222211 11112233344577
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcEEE
Q 010011 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (520)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~ 231 (520)
.+++.|+ + +.+..||.++.+-..
T Consensus 404 ~~l~~~~-d------g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 404 NILVSGS-E------NQFNIYNLRSGKLVH 426 (464)
T ss_dssp SEEEEEE-T------TEEEEEETTTCCEEE
T ss_pred CEEEEec-C------CeEEEEECCCCcEEe
Confidence 7777776 2 348899998876554
No 145
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=91.43 E-value=13 Score=40.40 Aligned_cols=214 Identities=12% Similarity=0.050 Sum_probs=105.0
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCC---------CCCCc
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM---------NPLRD 111 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~---------~~~~~ 111 (520)
++|++| +++....+. ....++++|+.+++...... +.......+-.-++.||+. ..+.. .....
T Consensus 172 PDG~~l-a~~~~~~G~-e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD~~l~~~-~~~~~~~~~~~~~~~~~~~ 244 (741)
T 1yr2_A 172 DDGRLL-AYSVQDGGS-DWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGNDALLYS-RFAEPKEGQAFQALNYNQT 244 (741)
T ss_dssp TTSSEE-EEEEEETTC-SEEEEEEEETTTCCEEEEEE----EEEESCCCEESTTSEEEEE-ECCCC--------CCCCCE
T ss_pred CCCCEE-EEEEcCCCC-ceEEEEEEECCCCCCCCccC----CCceeccEEEECCCEEEEE-EecCcccccccccCCCCCE
Confidence 566654 444322111 22469999999998865321 1111111111113234333 33221 12456
Q ss_pred EEEEECCCCeEEeecccCCCCCCCCCceEEE-ECCE-EEEEeCCCCCCCCCCcceeceeEEEEcCcc--e-EEEcccCCC
Q 010011 112 LHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF--V-WKRATTSGN 186 (520)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~-W~~v~~~~~ 186 (520)
++++++.+..-....+......+.+...... -+++ |++..... ....++++++|+.+. . |..+...
T Consensus 245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~-------~~~~~~l~~~d~~~~~~~~~~~l~~~-- 315 (741)
T 1yr2_A 245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG-------TDPVNTVHVARVTNGKIGPVTALIPD-- 315 (741)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT-------TCSCCEEEEEEEETTEECCCEEEECS--
T ss_pred EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc-------CCCcceEEEEECCCCCCcccEEecCC--
Confidence 8888887654210001111111222222222 2444 44444311 112568999998876 6 8877522
Q ss_pred CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCC--CcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCC
Q 010011 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ 264 (520)
Q Consensus 187 ~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t--~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~ 264 (520)
.... .......++.||+....+. ....++.+|+++ ..|+.+.... . ..-......++++++......
T Consensus 316 -~~~~-~~~~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~---~-~~l~~~~~~~~~lv~~~~~dg-- 384 (741)
T 1yr2_A 316 -LKAQ-WDFVDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPES---K-DNLESVGIAGNRLFASYIHDA-- 384 (741)
T ss_dssp -SSSC-EEEEEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCC---S-SEEEEEEEEBTEEEEEEEETT--
T ss_pred -CCce-EEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCC---C-CeEEEEEEECCEEEEEEEECC--
Confidence 1111 1222334677777754322 235699999988 5799886421 1 111223334778777665432
Q ss_pred CccCcEEEEecCCCcEEEe
Q 010011 265 NLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 265 ~~~~dv~~yd~~~~~W~~l 283 (520)
...+|++|+....-..+
T Consensus 385 --~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 385 --KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp --EEEEEEEETTSCEEEEC
T ss_pred --EEEEEEEeCCCCceeec
Confidence 34589999765544443
No 146
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=91.31 E-value=6.5 Score=42.53 Aligned_cols=261 Identities=10% Similarity=0.021 Sum_probs=124.0
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCC-CCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
+|+++|.+--. .......+|+.+.....|+.+.....+... ........+ +++.++|.-..+......++++|+.
T Consensus 78 dG~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 78 RNGRFFYVRTH--KDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp ETTEEEEEEEC--TTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred ECCEEEEEEEc--CCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 35666654321 111346688888888888876421111000 011112222 5555454322222234589999999
Q ss_pred CCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCC--CCCcceeceeEEEEcCcceE--EEcccCCCCCCCCcce
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSN--TNDEVYYNDLYILNTETFVW--KRATTSGNPPSARDSH 194 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~--~~~~~~~~~v~~~d~~t~~W--~~v~~~~~~p~~r~~h 194 (520)
+++..... ..+.......+-.-+++.++++....... .........++++++.+..- ..+.. ....+....
T Consensus 156 tg~~~~~~---~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~--~~~~~~~~~ 230 (695)
T 2bkl_A 156 SGEWSKVD---VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE--RTGDPTTFL 230 (695)
T ss_dssp TCCBCSSC---CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--CCCCTTCEE
T ss_pred CCCCcCCc---ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--cCCCCEEEE
Confidence 98764111 12222222222223566666665422100 00112346689999876542 22221 111111222
Q ss_pred eE-EeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEE
Q 010011 195 TC-SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMI 273 (520)
Q Consensus 195 ~~-~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~y 273 (520)
.. ..-+++.+++...... ...+++.+|..+..|+.+.... . .. ...+..++.+|+..... .....|+++
T Consensus 231 ~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~---~-~~-~~~~~~~g~l~~~s~~~---~~~~~l~~~ 300 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGV---G-AK-YEVHAWKDRFYVLTDEG---APRQRVFEV 300 (695)
T ss_dssp EEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECS---S-CC-EEEEEETTEEEEEECTT---CTTCEEEEE
T ss_pred EEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCC---C-ce-EEEEecCCcEEEEECCC---CCCCEEEEE
Confidence 22 2235555555443221 2457888888778888886421 1 11 22223566655554321 123569999
Q ss_pred ecCCCc---EEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeec
Q 010011 274 DVDSGL---WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 330 (520)
Q Consensus 274 d~~~~~---W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~ 330 (520)
|+++.. |..+.... +........+ .++.+++....+. ...+|.++.
T Consensus 301 d~~~~~~~~~~~l~~~~----~~~~l~~~~~---~~~~lv~~~~~dg----~~~l~~~~~ 349 (695)
T 2bkl_A 301 DPAKPARASWKEIVPED----SSASLLSVSI---VGGHLSLEYLKDA----TSEVRVATL 349 (695)
T ss_dssp BTTBCSGGGCEEEECCC----SSCEEEEEEE---ETTEEEEEEEETT----EEEEEEEET
T ss_pred eCCCCCccCCeEEecCC----CCCeEEEEEE---ECCEEEEEEEECC----EEEEEEEeC
Confidence 997764 88876431 1111222222 2677777664433 234666664
No 147
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.30 E-value=6.7 Score=38.19 Aligned_cols=225 Identities=9% Similarity=0.045 Sum_probs=100.3
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE----CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
+..+++.|+.+ ..+.+||..+.+-.... ..+.+ ..++... ++.+++.|+.+ ..+.+||+.
T Consensus 111 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~ 174 (408)
T 4a11_B 111 DTGMFTSSSFD------KTLKVWDTNTLQTADVF---NFEET--VYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLK 174 (408)
T ss_dssp CTTCEEEEETT------SEEEEEETTTTEEEEEE---ECSSC--EEEEEECSSCSSCCEEEEEESS-----SSEEEEESS
T ss_pred CCcEEEEEeCC------CeEEEeeCCCCccceec---cCCCc--eeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCC
Confidence 33355666532 45889999887755432 11111 1122221 33466666654 358889987
Q ss_pred CCeEEeecccCCCCCCCCCc-eEEEE-C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcce--EEEcccC-----CCC-
Q 010011 119 SHTWISPSVRGEGPEAREGH-SAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTS-----GNP- 187 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~h-s~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~--W~~v~~~-----~~~- 187 (520)
+.+-...- ....... +++.. + ..+++.|+. ...+.+||+.+.. ...+... ...
T Consensus 175 ~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 175 SGSCSHIL-----QGHRQEILAVSWSPRYDYILATASA-----------DSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238 (408)
T ss_dssp SSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEET-----------TSCEEEEETTCSSCCSEECCTTTTCSCCCTT
T ss_pred Ccceeeee-----cCCCCcEEEEEECCCCCcEEEEEcC-----------CCcEEEEECCCCCcccccccccccccceeec
Confidence 65432111 1111111 22222 2 236777773 2346778875432 1111100 000
Q ss_pred ---CCCCcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCC--CceeEEEEECCEEEEEecc
Q 010011 188 ---PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP--RAGHSTVAFGKNLFVFGGF 260 (520)
Q Consensus 188 ---p~~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~--R~~hs~~~~~~~iyv~GG~ 260 (520)
......-..+.+ ++..++.|+.++ .+.+||+.+.+-............ ..........+..+++++.
T Consensus 239 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDN------RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp TSSCSCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred cccccccCceeEEEEcCCCCEEEEecCCC------eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 001111112222 566777777543 488899887653222111101111 1111111222334444443
Q ss_pred cCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 261 TDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 261 ~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
. ..+.+||+.+..-...... .. .......+ ..++.+++.||.++.
T Consensus 313 ~------~~i~v~d~~~~~~~~~~~~---~~--~~v~~~~~--s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 313 G------STIAVYTVYSGEQITMLKG---HY--KTVDCCVF--QSNFQELYSGSRDCN 357 (408)
T ss_dssp T------TEEEEEETTTCCEEEEECC---CS--SCEEEEEE--ETTTTEEEEEETTSC
T ss_pred C------CEEEEEECcCCcceeeecc---CC--CeEEEEEE--cCCCCEEEEECCCCe
Confidence 2 3589999888754333221 11 11122222 245567777876654
No 148
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=91.26 E-value=15 Score=38.00 Aligned_cols=105 Identities=8% Similarity=0.050 Sum_probs=53.0
Q ss_pred ceeEEEEcCcceEEEcccCCCCCCCC-cceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCC
Q 010011 166 NDLYILNTETFVWKRATTSGNPPSAR-DSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 242 (520)
Q Consensus 166 ~~v~~~d~~t~~W~~v~~~~~~p~~r-~~h~~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R 242 (520)
..+.++|..+.+....-. ...... .-.+++.. + +.+++.|+.++ .+.+||+.+.+....-.........
T Consensus 183 ~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTCCEEEECCBTTBCCCS
T ss_pred CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCEeEEecccccccCC
Confidence 457788877655433211 001000 12222222 5 67777777543 4889998877654432100001111
Q ss_pred ceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEee
Q 010011 243 AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 243 ~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
.-.++...++..++.|+.+ ..+.+||+.+.......
T Consensus 255 ~v~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~ 290 (615)
T 1pgu_A 255 GIFALSWLDSQKFATVGAD------ATIRVWDVTTSKCVQKW 290 (615)
T ss_dssp CEEEEEESSSSEEEEEETT------SEEEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCEEEEEcCC------CcEEEEECCCCcEEEEE
Confidence 1112222266677777753 34899999887654443
No 149
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=91.23 E-value=12 Score=36.53 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEEecCC
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
++.+++.|+.++ .+..||+.+.+....-. ... ....++.+ ++.+++.|+.+. .+.+||+.+
T Consensus 209 ~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~---~h~--~~v~~v~~~p~~~~l~s~s~D~------~v~lwd~~~ 271 (354)
T 2pbi_B 209 TGNTFVSGGCDK------KAMVWDMRSGQCVQAFE---THE--SDVNSVRYYPSGDAFASGSDDA------TCRLYDLRA 271 (354)
T ss_dssp SCCEEEEEETTS------CEEEEETTTCCEEEEEC---CCS--SCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEec---CCC--CCeEEEEEeCCCCEEEEEeCCC------eEEEEECCC
Confidence 356788887653 48889998876544321 111 11122222 456777777643 388999887
Q ss_pred CcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 278 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 278 ~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
..-..+... ...........+ ..++.+++.|+.+..
T Consensus 272 ~~~~~~~~~---~~~~~~~~~~~~--s~~g~~l~~g~~d~~ 307 (354)
T 2pbi_B 272 DREVAIYSK---ESIIFGASSVDF--SLSGRLLFAGYNDYT 307 (354)
T ss_dssp TEEEEEECC---TTCCSCEEEEEE--CTTSSEEEEEETTSC
T ss_pred CcEEEEEcC---CCcccceeEEEE--eCCCCEEEEEECCCc
Confidence 753332221 111112222222 345667777775543
No 150
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.09 E-value=18 Score=38.44 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=67.0
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccCCCCCCCC---CceEEEECCEEEEEeCCCCCCCCCCcc
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPEARE---GHSAALVGKRLFIFGGCGKSSNTNDEV 163 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~---~hs~~~~~~~lyv~GG~~~~~~~~~~~ 163 (520)
+.++.+++||+.+.. +.++++|..|.+ |+..........+.+ ..+.++.++++|+...
T Consensus 63 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----------- 125 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----------- 125 (582)
T ss_dssp CCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-----------
T ss_pred ccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-----------
Confidence 445679999998753 249999998765 876431111100111 1344567888888533
Q ss_pred eeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCC------EEEEEecCCCCCcccCceEEEECCCCc--EEE
Q 010011 164 YYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKN------KIIVIGGEDGHDYYLSDVHILDTDTLT--WKE 231 (520)
Q Consensus 164 ~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~------~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~ 231 (520)
...++.+|.++. .|+.-......... ...+.++.++ .+| +|...........++.||.++.+ |+.
T Consensus 126 -dg~l~AlD~~TG~~~W~~~~~~~~~~~~-~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 126 -DASVVALNKNTGKVVWKKKFADHGAGYT-MTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp -TTEEEEEESSSCCEEEEEECSCGGGTCB-CCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred -CCEEEEEECCCCCEEeeecCCCCCcCcc-cccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCCEEeec
Confidence 246899998775 58764311000000 1112233445 444 44322111124569999998765 865
No 151
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.08 E-value=9.6 Score=35.31 Aligned_cols=197 Identities=6% Similarity=-0.063 Sum_probs=102.7
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~y 115 (520)
++++..++.||+.... .+.+.+||+. ++...+..... ...-++++.. ++.+|+.... ...+++|
T Consensus 24 ~i~~d~~g~l~v~~~~------~~~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~ 88 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHK------ANKISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGDIWFTENG-----ANKIGKL 88 (300)
T ss_dssp EEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSCEEEEETT-----TTEEEEE
T ss_pred eeeECCCCCEEEEcCC------CCeEEEECCC-CceEEEECCCC---CCcceeEEECCCCCEEEEecC-----CCeEEEE
Confidence 4444434458875431 2468899988 77766442111 1122333332 4678886532 2468999
Q ss_pred ECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcce
Q 010011 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (520)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h 194 (520)
|+. .++....... ....-++++.. ++++|+.... ...++++|++ .+........ ....-+
T Consensus 89 d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~-g~~~~~~~~~---~~~~~~ 149 (300)
T 2qc5_A 89 SKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----------GDRIGKLTAD-GTIYEYDLPN---KGSYPA 149 (300)
T ss_dssp CTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----------TTEEEEECTT-SCEEEEECSS---TTCCEE
T ss_pred CCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----------CCeEEEECCC-CCEEEccCCC---CCCCce
Confidence 988 6665443211 11222333333 5678886541 2458888887 5555443110 111223
Q ss_pred eEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEE
Q 010011 195 TCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYM 272 (520)
Q Consensus 195 ~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~ 272 (520)
.++. .++++|+.... ...+++||+ +.++..+..... ...-..++.. ++.+|+.... .+.+++
T Consensus 150 ~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~~~------~~~i~~ 213 (300)
T 2qc5_A 150 FITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPLPTN---AAAPVGITSGNDGALWFVEIM------GNKIGR 213 (300)
T ss_dssp EEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT------TTEEEE
T ss_pred eEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeCCCC---CCCcceEEECCCCCEEEEccC------CCEEEE
Confidence 3333 25668776432 245889998 666766543111 1111223322 4567775432 134899
Q ss_pred EecCCCcEEEee
Q 010011 273 IDVDSGLWTKVI 284 (520)
Q Consensus 273 yd~~~~~W~~l~ 284 (520)
||+ +..+....
T Consensus 214 ~~~-~g~~~~~~ 224 (300)
T 2qc5_A 214 ITT-TGEISEYD 224 (300)
T ss_dssp ECT-TCCEEEEE
T ss_pred EcC-CCcEEEEE
Confidence 998 56666553
No 152
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=91.02 E-value=12 Score=36.39 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=67.4
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE----CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAR 135 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 135 (520)
..+.++|+.+.+....- .+.. ..-.+..+ ++.+++.|+.++ .+.+||+.+.+....- .+ ..
T Consensus 176 ~~v~lwd~~~~~~~~~~-~~h~----~~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~~~~~~~~~~-~~----h~ 240 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSF-HGHG----ADVLCLDLAPSETGNTFVSGGCDK-----KAMVWDMRSGQCVQAF-ET----HE 240 (354)
T ss_dssp SEEEEEETTTCCEEEEE-ECCS----SCEEEEEECCCSSCCEEEEEETTS-----CEEEEETTTCCEEEEE-CC----CS
T ss_pred CcEEEEeCCCCeEEEEE-cCCC----CCeEEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCcEEEEe-cC----CC
Confidence 45788998887654321 1110 11112222 346777777653 5888998887654321 01 01
Q ss_pred CCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe--eCCEEEEEecCCC
Q 010011 136 EGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDG 211 (520)
Q Consensus 136 ~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~--~~~~lyv~GG~~~ 211 (520)
..-.++.. ++.+++.|+.+ ..+.+||+.+..-...-. ..........+. .++.+++.|+.++
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D-----------~~v~lwd~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDD-----------ATCRLYDLRADREVAIYS---KESIIFGASSVDFSLSGRLLFAGYNDY 306 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCeEEEEEeCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc---CCCcccceeEEEEeCCCCEEEEEECCC
Confidence 11122222 45677777732 346778887654322211 111111222222 2567777777543
Q ss_pred CCcccCceEEEECCCCc
Q 010011 212 HDYYLSDVHILDTDTLT 228 (520)
Q Consensus 212 ~~~~~~~i~~yd~~t~~ 228 (520)
.+.+||..+..
T Consensus 307 ------~i~vwd~~~~~ 317 (354)
T 2pbi_B 307 ------TINVWDVLKGS 317 (354)
T ss_dssp ------CEEEEETTTCS
T ss_pred ------cEEEEECCCCc
Confidence 48888986654
No 153
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=90.93 E-value=3.9 Score=44.87 Aligned_cols=105 Identities=10% Similarity=0.150 Sum_probs=57.9
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--C--CEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--G--KRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
+.+++.||.+ ..+.+||..+.++..+... ......-.++.. + +.+++.|+. ...+.+
T Consensus 21 g~~latg~~d-----g~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~-----------Dg~I~v 81 (753)
T 3jro_A 21 GKRLATCSSD-----KTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSY-----------DGKVLI 81 (753)
T ss_dssp SCCEEEEETT-----TEEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEET-----------TSCEEE
T ss_pred CCeEEEEECC-----CcEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeC-----------CCeEEE
Confidence 4556666554 3578888877777655422 111112222222 2 567777774 245788
Q ss_pred EEcCcceEEEcccCCCCCCCCcceeEEee--C--CEEEEEecCCCCCcccCceEEEECCCC
Q 010011 171 LNTETFVWKRATTSGNPPSARDSHTCSSW--K--NKIIVIGGEDGHDYYLSDVHILDTDTL 227 (520)
Q Consensus 171 ~d~~t~~W~~v~~~~~~p~~r~~h~~~~~--~--~~lyv~GG~~~~~~~~~~i~~yd~~t~ 227 (520)
+|+.+..|..+...... ...-.++.+ + +.+++.|+.++ .+..||+.+.
T Consensus 82 wd~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~ 133 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVH---SASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKEN 133 (753)
T ss_dssp EEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSS
T ss_pred EECCCCcccccccccCC---CCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecC
Confidence 88888877666432111 111222222 3 67788887553 4778887665
No 154
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=90.90 E-value=6.9 Score=37.11 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=36.2
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
++.+++.|+.++ .+..+|..+.+-...-. ...... .+++.. ++.+++.|+.+. .+.+||+++.
T Consensus 197 ~~~~l~s~s~D~------~i~iWd~~~~~~~~~~~---~h~~~v-~~~~~~p~~~~l~s~s~Dg------~i~iWd~~~~ 260 (304)
T 2ynn_A 197 DKPYMITASDDL------TIKIWDYQTKSCVATLE---GHMSNV-SFAVFHPTLPIIISGSEDG------TLKIWNSSTY 260 (304)
T ss_dssp TCCEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCE-EEEEECSSSSEEEEEETTS------CEEEEETTTC
T ss_pred CCCEEEEEcCCC------eEEEEeCCCCccceeeC---CCCCCE-EEEEECCCCCEEEEEcCCC------eEEEEECCCC
Confidence 455677776543 47888988764322111 011111 112222 345777777643 3889998887
Q ss_pred cEEE
Q 010011 279 LWTK 282 (520)
Q Consensus 279 ~W~~ 282 (520)
+-..
T Consensus 261 ~~~~ 264 (304)
T 2ynn_A 261 KVEK 264 (304)
T ss_dssp CEEE
T ss_pred ceee
Confidence 6443
No 155
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=90.83 E-value=9.4 Score=34.79 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=80.9
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeeccc---CCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcc
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVR---GEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEV 163 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~ 163 (520)
+++...+.+|+|=|. .+|+++.....+....+. ..+|. ... ++... ++++|+|-|
T Consensus 28 Ai~~~~g~~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG----------- 87 (207)
T 1pex_A 28 AITSLRGETMIFKDR-------FFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG----------- 87 (207)
T ss_dssp EEEEETTEEEEEETT-------EEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-----------
T ss_pred EEEeCCCcEEEEECC-------EEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-----------
Confidence 455578999999763 577777554333211110 12332 222 23333 589999988
Q ss_pred eeceeEEEEcCcce---EEEcccCCCCCC--CCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEE-----e
Q 010011 164 YYNDLYILNTETFV---WKRATTSGNPPS--ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----L 232 (520)
Q Consensus 164 ~~~~v~~~d~~t~~---W~~v~~~~~~p~--~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----~ 232 (520)
+.+|+|+-.+.. =+.+...| .|. .....+.... ++++|+|-| +..|+||..+++-.. +
T Consensus 88 --~~~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~~d~gyPr~i 156 (207)
T 1pex_A 88 --RKFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMDKDYPRLI 156 (207)
T ss_dssp --TEEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEECSSCCCBH
T ss_pred --CEEEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCccccCCCCccH
Confidence 346777632211 12232222 222 1222222222 489999976 458999987653221 0
Q ss_pred eCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEE
Q 010011 233 NTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 233 ~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (520)
.. .-.-.+..-.++...++++|+|-|. ..|+||..+.+-..
T Consensus 157 ~~-~~~Gip~~iDaAf~~~g~~YfFkg~--------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 157 EE-DFPGIGDKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HH-HSTTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred HH-cCCCCCCCccEEEEcCCcEEEEECC--------EEEEEeCCccEEec
Confidence 00 0001122233455568999999874 38999988765433
No 156
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.80 E-value=2.3 Score=49.37 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=93.6
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
++++..++..+++|+.+ ..+.+||..+....... .+ ........+..-+++.++.||.+ ..+.+||
T Consensus 966 ~~~~sp~g~~l~~g~~~------g~i~i~d~~~~~~~~~~-~~--h~~~v~~l~~s~dg~~l~s~~~d-----g~i~vwd 1031 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDED------GAIKIIELPNNRVFSSG-VG--HKKAVRHIQFTADGKTLISSSED-----SVIQVWN 1031 (1249)
T ss_dssp EEEECTTSSEEEEEETT------SCCEEEETTTTSCEEEC-CC--CSSCCCCEEECSSSSCEEEECSS-----SBEEEEE
T ss_pred EEEEcCCCCEEEEEcCC------CCEEEEEcCCCceeeec-cc--CCCceEEEEECCCCCEEEEEcCC-----CEEEEEE
Confidence 33343333355666532 34788998876644321 11 11111112222255666777654 3588999
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeE
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~ 196 (520)
..+........ ....-.++....+..++.|+. ...+.++|+.+.+....-. .........+
T Consensus 1032 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~ 1092 (1249)
T 3sfz_A 1032 WQTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSF-----------DGTVKVWNVITGRIERDFT---CHQGTVLSCA 1092 (1249)
T ss_dssp TTTTEEECCBC-----CSSCEEEEEECSSSEEEEEES-----------SSEEEEEETTTTCCCEEEE---CCSSCCCCEE
T ss_pred CCCCceEEEec-----CCCcEEEEEEcCCCcEEEEEC-----------CCcEEEEECCCCceeEEEc---ccCCcEEEEE
Confidence 99887754331 111112233334444555553 2457788887654222110 0111111222
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE--EECCEEEEEecccCCCCccCcEEEEe
Q 010011 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV--AFGKNLFVFGGFTDSQNLYDDLYMID 274 (520)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~--~~~~~iyv~GG~~~~~~~~~dv~~yd 274 (520)
...++.+++.|+.++ .+..||..+..- +.. .........++ .-++++++.|+.++ .+.+||
T Consensus 1093 ~s~d~~~l~s~s~d~------~v~iwd~~~~~~--~~~---l~~h~~~v~~~~~s~dg~~lat~~~dg------~i~vwd 1155 (1249)
T 3sfz_A 1093 ISSDATKFSSTSADK------TAKIWSFDLLSP--LHE---LKGHNGCVRCSAFSLDGILLATGDDNG------EIRIWN 1155 (1249)
T ss_dssp ECSSSSSCEEECCSS------CCCEECSSSSSC--SBC---CCCCSSCEEEEEECSSSSEEEEEETTS------CCCEEE
T ss_pred ECCCCCEEEEEcCCC------cEEEEECCCcce--eee---eccCCCcEEEEEECCCCCEEEEEeCCC------EEEEEE
Confidence 233666777777543 366777765431 111 11111111222 23566778887543 378889
Q ss_pred cCCCc
Q 010011 275 VDSGL 279 (520)
Q Consensus 275 ~~~~~ 279 (520)
+.+..
T Consensus 1156 ~~~~~ 1160 (1249)
T 3sfz_A 1156 VSDGQ 1160 (1249)
T ss_dssp SSSSC
T ss_pred CCCCc
Confidence 88765
No 157
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=90.70 E-value=21 Score=38.56 Aligned_cols=194 Identities=11% Similarity=0.046 Sum_probs=101.2
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCE-EEEEcCCCCC--------CCCCcEEEEECCCCeEEeecccCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGEN-LYVFGGTDGM--------NPLRDLHILDTSSHTWISPSVRGE 130 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-iyv~GG~~~~--------~~~~~~~~yd~~t~~W~~~~~~g~ 130 (520)
..++++|+.+++...... +..+....+-. +++ ||... .+.. .....+|++++.+..=....+. .
T Consensus 155 ~~i~v~dl~tg~~~~~~~----~~~k~~~~~Ws-Dg~~l~y~~-~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~-~ 227 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL----KDVKFSGISWL-GNEGFFYSS-YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF-G 227 (693)
T ss_dssp EEEEEEETTTCSEEEEEE----EEEESCCCEEE-TTTEEEEEE-SSCCC-------CCCCEEEEEETTSCGGGCEEEE-S
T ss_pred EEEEEEECCCCCCCcccc----CCceeccEEEe-CCCEEEEEE-ecCcccccccccCCCcEEEEEECCCCcccceEEE-e
Confidence 579999999998765421 11122222333 554 44443 2221 3345789988876542111110 1
Q ss_pred CCC--CCCCceEE-EECCE-EEEEeCCCCCCCCCCcceeceeEEEEcCcc--eEEEcccCCCCCCCCcceeEEeeCCEEE
Q 010011 131 GPE--AREGHSAA-LVGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKII 204 (520)
Q Consensus 131 ~p~--~r~~hs~~-~~~~~-lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~--~W~~v~~~~~~p~~r~~h~~~~~~~~ly 204 (520)
.+. +....+.. .-+++ |++..... ...+++|.+|+.+. .|..+... ...........++.||
T Consensus 228 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~--------~~~~~i~~~d~~~~~~~~~~l~~~----~~~~~~~~~~~g~~l~ 295 (693)
T 3iuj_A 228 AIPAQHHRYVGATVTEDDRFLLISAANS--------TSGNRLYVKDLSQENAPLLTVQGD----LDADVSLVDNKGSTLY 295 (693)
T ss_dssp CSGGGCCSEEEEEECTTSCEEEEEEESS--------SSCCEEEEEETTSTTCCCEEEECS----SSSCEEEEEEETTEEE
T ss_pred cCCCCCeEEEEEEEcCCCCEEEEEEccC--------CCCcEEEEEECCCCCCceEEEeCC----CCceEEEEeccCCEEE
Confidence 111 22222222 22444 44433211 11368999998765 67777521 1111122334578899
Q ss_pred EEecCCCCCcccCceEEEECCCC---cEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 205 VIGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 205 v~GG~~~~~~~~~~i~~yd~~t~---~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
+....+. ....|+.+|+.+. .|+.+..... ... .....++.|++..-... ...|+++|++.....
T Consensus 296 ~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~----~~~-~~s~~g~~lv~~~~~~g----~~~l~~~d~~g~~~~ 363 (693)
T 3iuj_A 296 LLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQ----QVL-TVHSGSGYLFAEYMVDA----TARVEQFDYEGKRVR 363 (693)
T ss_dssp EEECTTC---TTCEEEEEETTSCCGGGCEEEECCCS----SCE-EEEEETTEEEEEEEETT----EEEEEEECTTSCEEE
T ss_pred EEECCCC---CCCEEEEEeCCCCCccccEEEecCCC----CEE-EEEEECCEEEEEEEECC----eeEEEEEECCCCeeE
Confidence 8876543 2457899998763 4887765221 112 44455666655443221 346899999876655
Q ss_pred Eee
Q 010011 282 KVI 284 (520)
Q Consensus 282 ~l~ 284 (520)
.+.
T Consensus 364 ~l~ 366 (693)
T 3iuj_A 364 EVA 366 (693)
T ss_dssp EEC
T ss_pred Eee
Confidence 553
No 158
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=90.68 E-value=9.9 Score=37.47 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcC
Q 010011 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE 174 (520)
Q Consensus 96 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~ 174 (520)
.+++.|+.+ ..+.+||+.+.+....-. .......-.+++.. ++.+++.|+. ...+.++|+.
T Consensus 145 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~ 206 (402)
T 2aq5_A 145 NVLLSAGCD-----NVILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCR-----------DKRVRVIEPR 206 (402)
T ss_dssp TEEEEEETT-----SCEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEET-----------TSEEEEEETT
T ss_pred CEEEEEcCC-----CEEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEec-----------CCcEEEEeCC
Confidence 477777654 358899999887643210 00011111122222 4566666663 2468889988
Q ss_pred cceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcE--EEeeCCCCCCCCCceeEEEEE-C
Q 010011 175 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW--KELNTSGMVLSPRAGHSTVAF-G 251 (520)
Q Consensus 175 t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W--~~~~~~~~~p~~R~~hs~~~~-~ 251 (520)
+.+-...-.. .....+....+...++.+++.|.... .-..+.+||+.+..- ..... .....-.+++.. +
T Consensus 207 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~~~~---~d~~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 207 KGTVVAEKDR-PHEGTRPVHAVFVSEGKILTTGFSRM---SERQVALWDTKHLEEPLSLQEL----DTSSGVLLPFFDPD 278 (402)
T ss_dssp TTEEEEEEEC-SSCSSSCCEEEECSTTEEEEEEECTT---CCEEEEEEETTBCSSCSEEEEC----CCCSSCEEEEEETT
T ss_pred CCceeeeecc-CCCCCcceEEEEcCCCcEEEEeccCC---CCceEEEEcCccccCCceEEec----cCCCceeEEEEcCC
Confidence 7654322100 11111122222333777777773211 124588899876432 11111 111111222222 3
Q ss_pred -CEEEEEecccCCCCccCcEEEEecCCCc--EEEeee
Q 010011 252 -KNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKVIT 285 (520)
Q Consensus 252 -~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~~l~~ 285 (520)
..+++.|+.+ ..+.+||+.+.. ...+..
T Consensus 279 ~~~l~~~g~~d------g~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 279 TNIVYLCGKGD------SSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp TTEEEEEETTC------SCEEEEEECSSTTCEEEEEE
T ss_pred CCEEEEEEcCC------CeEEEEEecCCCcceEeecc
Confidence 3455666543 248899988876 444443
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=90.63 E-value=11 Score=35.10 Aligned_cols=156 Identities=12% Similarity=0.119 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCC-CCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA-REGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~-r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
++.+|+.+.. ...+.+||+...........+..+.. ..-+.++.. ++++|+.+.. ....+.+
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----------~~~~i~~ 104 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----------PTHQIQI 104 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----------GGCEEEE
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----------CCCEEEE
Confidence 3467766432 23578888775443333321111111 122344442 5789887641 0246888
Q ss_pred EEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE
Q 010011 171 LNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (520)
Q Consensus 171 ~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~ 249 (520)
||........+.. +....-+.++. .++++|+.... .+.+.+||+.......+...+.... -..++.
T Consensus 105 ~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~~~---p~~i~~ 171 (286)
T 1q7f_A 105 YNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLEF---PNGVVV 171 (286)
T ss_dssp ECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCSS---EEEEEE
T ss_pred ECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCccCC---cEEEEE
Confidence 8865554444421 11111233333 26678887542 2458899987665555543111111 122222
Q ss_pred -ECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 250 -FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 250 -~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
-++++|+..... +.|++||++......+
T Consensus 172 ~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~ 200 (286)
T 1q7f_A 172 NDKQEIFISDNRA------HCVKVFNYEGQYLRQI 200 (286)
T ss_dssp CSSSEEEEEEGGG------TEEEEEETTCCEEEEE
T ss_pred CCCCCEEEEECCC------CEEEEEcCCCCEEEEE
Confidence 247888876532 3589999876654444
No 160
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=90.62 E-value=12 Score=35.62 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=30.7
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEE---ECCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT---VGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
..+.+||..+.+...+.. . ...-.++.. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 108 g~v~iwd~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 162 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQ---H--DAPVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSN 162 (368)
T ss_dssp SEEEEEETTTTEEEEEEE---C--SSCEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSS
T ss_pred CcEEEEEcCCCCceeecc---c--cCceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCc
Confidence 468889998887665431 1 111122222 256777777754 358888887654
No 161
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=90.51 E-value=2.1 Score=41.10 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=81.2
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
+++||+.+..+ ..+++||+.+.++...... ....-++++.. ++++|+..... ......++++|
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~-------~~~~~~i~~~d 118 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGD-------FKSTGGIFAAT 118 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTT-------SSSCCEEEEEC
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCC-------CCCCceEEEEe
Confidence 56788876532 4699999998887654311 11122233333 56788875421 00124689999
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~- 250 (520)
+++.....+... ......-..++. -++.+|+.............++++|+++.+...+... .. .....+..
T Consensus 119 ~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~i~~~~ 191 (333)
T 2dg1_A 119 ENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS---VANGIALST 191 (333)
T ss_dssp TTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES---SEEEEEECT
T ss_pred CCCCEEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CC---cccceEECC
Confidence 988766533211 111111222222 2677877543221111235699999988777655321 11 11223322
Q ss_pred CC-EEEEEecccCCCCccCcEEEEecCC
Q 010011 251 GK-NLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 251 ~~-~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
++ .+|+.... .+.|++||+.+
T Consensus 192 dg~~l~v~~~~------~~~i~~~d~~~ 213 (333)
T 2dg1_A 192 DEKVLWVTETT------ANRLHRIALED 213 (333)
T ss_dssp TSSEEEEEEGG------GTEEEEEEECT
T ss_pred CCCEEEEEeCC------CCeEEEEEecC
Confidence 33 57776532 23589999854
No 162
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=90.37 E-value=9.2 Score=35.04 Aligned_cols=182 Identities=11% Similarity=0.003 Sum_probs=90.9
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEE
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 123 (520)
.||+... .+.+++||+.......+.. .....-++++.. +++||+.... ...+++||..+....
T Consensus 79 ~l~v~~~-------~~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 79 TVYVTDF-------NNRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQT 142 (270)
T ss_dssp CEEEEET-------TTEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCE
T ss_pred CEEEEcC-------CCEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeE
Confidence 4776543 1358888887765544321 111122333333 5678887432 245888876655443
Q ss_pred eecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee-CC
Q 010011 124 SPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KN 201 (520)
Q Consensus 124 ~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~ 201 (520)
.... .....-..++.. ++++|+.... .+.+++||+.+......... .. ..-..++.. ++
T Consensus 143 ~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~d~~g 203 (270)
T 1rwi_B 143 VLPF----TGLNDPDGVAVDNSGNVYVTDTD-----------NNRVVKLEAESNNQVVLPFT-DI---TAPWGIAVDEAG 203 (270)
T ss_dssp ECCC----CSCCSCCCEEECTTCCEEEEEGG-----------GTEEEEECTTTCCEEECCCS-SC---CSEEEEEECTTC
T ss_pred eecc----ccCCCceeEEEeCCCCEEEEECC-----------CCEEEEEecCCCceEeeccc-CC---CCceEEEECCCC
Confidence 2211 111122334443 4678886541 25688999887654433211 11 122233333 45
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCC
Q 010011 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
.+|+.... .+.+.+||+.+..-...... ....-.+++.. ++++|+..... +.|.+|++..
T Consensus 204 ~l~v~~~~------~~~v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~~~~------~~v~~~~~~~ 264 (270)
T 1rwi_B 204 TVYVTEHN------TNQVVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDRTVYVADRGN------DRVVKLTSLE 264 (270)
T ss_dssp CEEEEETT------TSCEEEECTTCSCCEECCCC----SCSCEEEEEECTTCCEEEEEGGG------TEEEEECCCG
T ss_pred CEEEEECC------CCcEEEEcCCCCcceeeccC----CCCCceeEEECCCCCEEEEECCC------CEEEEEcCCC
Confidence 78876542 23588999876543332211 11111223332 45688776543 3477777654
No 163
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=90.17 E-value=4.7 Score=39.92 Aligned_cols=197 Identities=10% Similarity=0.057 Sum_probs=91.0
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
.+++.|+.+ ..+.+||..+++....-..... . ..-.+..+ ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 145 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 145 NVLLSAGCD------NVILVWDVGTGAAVLTLGPDVH--P-DTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTV 210 (402)
T ss_dssp TEEEEEETT------SCEEEEETTTTEEEEEECTTTC--C-SCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEE
T ss_pred CEEEEEcCC------CEEEEEECCCCCccEEEecCCC--C-CceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCce
Confidence 356666643 3588999988876542100011 1 11222222 55666667654 4689999988765
Q ss_pred EeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE--EEcccCCCCCCCCcceeEEee-
Q 010011 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW--KRATTSGNPPSARDSHTCSSW- 199 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W--~~v~~~~~~p~~r~~h~~~~~- 199 (520)
...-..+ ....+....+...++++++.|... .....+.+||+.+..- .... .........++..
T Consensus 211 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~--------~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 211 VAEKDRP-HEGTRPVHAVFVSEGKILTTGFSR--------MSERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDP 277 (402)
T ss_dssp EEEEECS-SCSSSCCEEEECSTTEEEEEEECT--------TCCEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEET
T ss_pred eeeeccC-CCCCcceEEEEcCCCcEEEEeccC--------CCCceEEEEcCccccCCceEEe----ccCCCceeEEEEcC
Confidence 3321011 111111222222356777776210 0135678888876431 1111 0111111222222
Q ss_pred -CCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecC
Q 010011 200 -KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (520)
Q Consensus 200 -~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (520)
++.+++.|+.++ .+.+||..+.+ ...+.. ......-.+++...+..+++.+. ..+.+|++.
T Consensus 278 ~~~~l~~~g~~dg------~i~i~d~~~~~~~~~~l~~---~~~~~~v~~~~~sp~~~~~~s~~-------~~~~~~~l~ 341 (402)
T 2aq5_A 278 DTNIVYLCGKGDS------SIRYFEITSEAPFLHYLSM---FSSKESQRGMGYMPKRGLEVNKC-------EIARFYKLH 341 (402)
T ss_dssp TTTEEEEEETTCS------CEEEEEECSSTTCEEEEEE---ECCSSCCSEEEECCGGGSCGGGT-------EEEEEEEEE
T ss_pred CCCEEEEEEcCCC------eEEEEEecCCCcceEeecc---cccCCcccceEEecccccceecc-------eeEEEEEcC
Confidence 445666665443 47888887665 444433 11111111223333322222221 246777777
Q ss_pred CCcEEEee
Q 010011 277 SGLWTKVI 284 (520)
Q Consensus 277 ~~~W~~l~ 284 (520)
++..+.+.
T Consensus 342 ~~~~~~i~ 349 (402)
T 2aq5_A 342 ERKCEPIA 349 (402)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEE
Confidence 77655543
No 164
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.02 E-value=12 Score=43.08 Aligned_cols=200 Identities=10% Similarity=0.089 Sum_probs=94.3
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~ 114 (520)
++++..++.+++.||.+ ..+.+||..+.+-...- .+. ...-.++.+ ++++++.|+.+ ..+.+
T Consensus 620 ~~~~s~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~-~~h----~~~v~~~~~s~~~~~l~s~~~d-----~~v~v 683 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGAD------KTLQVFKAETGEKLLDI-KAH----EDEVLCCAFSSDDSYIATCSAD-----KKVKI 683 (1249)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEE-CCC----SSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred EEEECCCCCEEEEEeCC------CeEEEEECCCCCEEEEe-ccC----CCCEEEEEEecCCCEEEEEeCC-----CeEEE
Confidence 33443333455666632 35889999887644311 111 111222222 45666666643 35889
Q ss_pred EECCCCeEEeecccCCCCCCCCCceEEEE----CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCC
Q 010011 115 LDTSSHTWISPSVRGEGPEAREGHSAALV----GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (520)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~----~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~ 190 (520)
+|+.+.+....- .+ ......++.. +..+++.|+. ...+.++|+.+......-. ....
T Consensus 684 wd~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~~~l~sg~~-----------d~~v~vwd~~~~~~~~~~~---~h~~ 744 (1249)
T 3sfz_A 684 WDSATGKLVHTY-DE----HSEQVNCCHFTNKSNHLLLATGSN-----------DFFLKLWDLNQKECRNTMF---GHTN 744 (1249)
T ss_dssp EETTTCCEEEEE-EC----CSSCEEEEEECSSSSCCEEEEEET-----------TSCEEEEETTSSSEEEEEC---CCSS
T ss_pred EECCCCceEEEE-cC----CCCcEEEEEEecCCCceEEEEEeC-----------CCeEEEEECCCcchhheec---CCCC
Confidence 999887643321 01 1111222222 2235555552 2347788887765433221 0111
Q ss_pred CcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCC------CC---C-CceeEEEEECCEEEEEecc
Q 010011 191 RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMV------LS---P-RAGHSTVAFGKNLFVFGGF 260 (520)
Q Consensus 191 r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~------p~---~-R~~hs~~~~~~~iyv~GG~ 260 (520)
.....+...++.+++.|+.++ .+..||+.+..-......... +. . .....+..-+++.+++++.
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADG------TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSS------EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred CEEEEEEecCCCEEEEEECCC------eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 111112222566777777543 477788766543322110000 00 0 0111111224455555542
Q ss_pred cCCCCccCcEEEEecCCCcEEEee
Q 010011 261 TDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 261 ~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
+.+.+||+.+.......
T Consensus 819 -------~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 819 -------NKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp -------TEEEEEETTTCCEEEEE
T ss_pred -------CcEEEEEecCCCceeEE
Confidence 35889999888765443
No 165
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=89.99 E-value=12 Score=34.81 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=41.8
Q ss_pred ceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeee
Q 010011 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVA 297 (520)
Q Consensus 218 ~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~ 297 (520)
.+..+|..+..-..... ....-........++.+++.+|..+ ..+.+||+.+.+-...-. + ......
T Consensus 222 ~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d-----~~i~iwd~~~~~~~~~l~-g----H~~~V~ 288 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQ-----NQLVIWKYPTMAKVAELK-G----HTSRVL 288 (318)
T ss_dssp EEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTT-----CCEEEEETTTCCEEEEEC-C----CSSCEE
T ss_pred EEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCC-----CEEEEEECCCCcEEEEEc-C----CCCCEE
Confidence 46778887766544432 1111111112222455666555433 348999988765332211 1 111122
Q ss_pred eeeeccccCCEEEEEcccCCC
Q 010011 298 GDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 298 ~~~~~~~~~~~l~v~GG~~~~ 318 (520)
++.+ ..++.+++.||.+..
T Consensus 289 ~l~~--spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 289 SLTM--SPDGATVASAAADET 307 (318)
T ss_dssp EEEE--CTTSSCEEEEETTTE
T ss_pred EEEE--cCCCCEEEEEecCCe
Confidence 2222 346667778887654
No 166
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=89.97 E-value=12 Score=35.54 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=33.2
Q ss_pred EcCCCEEEEEcCcCCCCCCcCeEEEEEC-CCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDT-VNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 40 v~~g~~Iyi~GG~~~~~~~~~~~~~yd~-~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
.++++.+++.|+.+ ..+.+||. .+.....+. +. +....-.++....+.+++.|+.+ ..+.+||+.
T Consensus 65 ~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~--~~-~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~ 130 (342)
T 1yfq_A 65 IDNTDLQIYVGTVQ------GEILKVDLIGSPSFQALT--NN-EANLGICRICKYGDDKLIAASWD-----GLIEVIDPR 130 (342)
T ss_dssp EESSSEEEEEEETT------SCEEEECSSSSSSEEECB--SC-CCCSCEEEEEEETTTEEEEEETT-----SEEEEECHH
T ss_pred CCCCCcEEEEEcCC------CeEEEEEeccCCceEecc--cc-CCCCceEEEEeCCCCEEEEEcCC-----CeEEEEccc
Confidence 34454144556532 45889999 887765543 10 01111122222224555566543 357777765
Q ss_pred C
Q 010011 119 S 119 (520)
Q Consensus 119 t 119 (520)
+
T Consensus 131 ~ 131 (342)
T 1yfq_A 131 N 131 (342)
T ss_dssp H
T ss_pred c
Confidence 3
No 167
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=89.75 E-value=24 Score=37.74 Aligned_cols=154 Identities=14% Similarity=0.010 Sum_probs=75.0
Q ss_pred eceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCC-cEEEeeCCCCCC-CC
Q 010011 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVL-SP 241 (520)
Q Consensus 165 ~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~~~~~~~~p-~~ 241 (520)
...++++|+.+.+...+... .........+.. -+++.++++..+... ....++.+|+.+. .+..+....... ..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 46799999998876665421 011111112222 255545554433221 2357999999988 776654311000 00
Q ss_pred CceeEEEEE--CCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCC
Q 010011 242 RAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL 319 (520)
Q Consensus 242 R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~ 319 (520)
.....+..- ++++++.+...+ ...+|.+|........+... . ......+.....++.|++.+..+.
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~---~---~~v~~~~~~spdg~~l~~~~~~~~-- 378 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKG---E---WEVTNFAGFDPKGTRLYFESTEAS-- 378 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCS---S---SCEEEEEEECTTSSEEEEEESSSC--
T ss_pred ccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCC---C---eEEEeeeEEcCCCCEEEEEecCCC--
Confidence 011112333 667655554322 35688898777776666321 1 111111111234556666554322
Q ss_pred CccCceEeeecccc
Q 010011 320 EALDDMYYLYTGLV 333 (520)
Q Consensus 320 ~~~~dv~~l~~~~~ 333 (520)
.....+|.++....
T Consensus 379 ~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 379 PLERHFYCIDIKGG 392 (706)
T ss_dssp TTCBEEEEEETTCC
T ss_pred CceEEEEEEEcCCC
Confidence 11236788776543
No 168
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=89.58 E-value=2.6 Score=41.15 Aligned_cols=151 Identities=8% Similarity=0.042 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
++++++.|+.+ ..+.+||+.+..|..+.. +........++.. ++.+++.|+. ...+.++
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~-----------d~~v~vw 82 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHART---FSDHDKIVTCVDWAPKSNRIVTCSQ-----------DRNAYVY 82 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCC---BCCCSSCEEEEEECTTTCCEEEEET-----------TSSEEEC
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEE---EecCCceEEEEEEeCCCCEEEEEeC-----------CCeEEEE
Confidence 45566677654 357788888888866542 2211112222222 4566677763 1346777
Q ss_pred EcCcce-EEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCc-EEEeeCCCCCCCCCceeEEE
Q 010011 172 NTETFV-WKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTV 248 (520)
Q Consensus 172 d~~t~~-W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~-W~~~~~~~~~p~~R~~hs~~ 248 (520)
|+.+.. |........ ....-.++... ++++++.|+.++ .+..||..+.+ |..+.... .+....-.++.
T Consensus 83 d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~ 153 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLR--LNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLK-RPLRSTILSLD 153 (377)
T ss_dssp ------CCCCEEECCC--CSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEEC-SSCCSCEEEEE
T ss_pred EcCCCCceeeeeEecc--cCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEee-cccCCCeEEEE
Confidence 777655 333221101 11111222222 566777777543 37777776654 32222100 11111112222
Q ss_pred EE-CCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 249 AF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 249 ~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
.. ++++++.|+.+. .+.+||+.+.
T Consensus 154 ~~~~~~~l~~~~~d~------~i~iwd~~~~ 178 (377)
T 3dwl_C 154 WHPNNVLLAAGCADR------KAYVLSAYVR 178 (377)
T ss_dssp ECTTSSEEEEEESSS------CEEEEEECCS
T ss_pred EcCCCCEEEEEeCCC------EEEEEEEEec
Confidence 22 456777777642 3888888643
No 169
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.44 E-value=17 Score=35.72 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=92.6
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
..+++||..+++........ .. ..-.++.+ ++.+++.|+.+ ..+.+||+.+.+....- ......
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~---~~-~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~-----~~~~~~ 178 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD---ES-TYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQTKLRTM-----AGHQAR 178 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC---TT-CCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEE-----CCCSSC
T ss_pred CeEEEeeCCCCcEeEeeecC---CC-CCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCeEEEEe-----cCCCCc
Confidence 46899999988876643211 11 11222222 55666777654 35889998877643321 111112
Q ss_pred ceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce--EEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCc
Q 010011 138 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDY 214 (520)
Q Consensus 138 hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~--W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~ 214 (520)
..++..++.+++.|+. ...+.++|+.... -..+.. ....-.++... ++.+++.|+.++
T Consensus 179 v~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~--- 239 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSR-----------SGAIHHHDVRIANHQIGTLQG-----HSSEVCGLAWRSDGLQLASGGNDN--- 239 (401)
T ss_dssp EEEEEEETTEEEEEET-----------TSEEEEEETTSSSCEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTS---
T ss_pred eEEEEECCCEEEEEcC-----------CCCEEEEecccCcceeeEEcC-----CCCCeeEEEEcCCCCEEEEEeCCC---
Confidence 2333335566677763 2457788876322 222211 01111222222 667778887543
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
.+.+||+.+.+-..... .....-.++... +..+++.||... -..+.+||+.+..-...
T Consensus 240 ---~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 240 ---VVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAATGARVNT 299 (401)
T ss_dssp ---CEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT----TCEEEEEETTTCCEEEE
T ss_pred ---eEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC----CCEEEEEECCCCCEEEE
Confidence 48889988755333221 111111222222 446777775221 13489999988765443
No 170
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=89.43 E-value=5.5 Score=37.76 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
++++++.|+.++ .+..++............ .............+..++.|+.+ ..+.++|.
T Consensus 97 dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~s~d-----------~~~~~~d~ 157 (340)
T 4aow_A 97 DGQFALSGSWDG-----TLRLWDLTTGTTTRRFVG---HTKDVLSVAFSSDNRQIVSGSRD-----------KTIKLWNT 157 (340)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEEC---CSSCEEEEEECTTSSCEEEEETT-----------SCEEEECT
T ss_pred CCCEEEEEcccc-----cceEEeecccceeeeecC---CCCceeEEEEeecCccceeecCC-----------CeEEEEEe
Confidence 456667776543 467778777665443311 11111111111234555666631 23556666
Q ss_pred CcceEEEcccCCCCCCCCcceeEEee----CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE
Q 010011 174 ETFVWKRATTSGNPPSARDSHTCSSW----KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (520)
Q Consensus 174 ~t~~W~~v~~~~~~p~~r~~h~~~~~----~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~ 249 (520)
....-......+ . ......+.+ .+.+++.||.+. .+..||..+.+...... ..... -.+++.
T Consensus 158 ~~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~~~s~~~d~------~i~i~d~~~~~~~~~~~---~h~~~-v~~~~~ 223 (340)
T 4aow_A 158 LGVCKYTVQDES--H--SEWVSCVRFSPNSSNPIIVSCGWDK------LVKVWNLANCKLKTNHI---GHTGY-LNTVTV 223 (340)
T ss_dssp TSCEEEEECSSS--C--SSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTTEEEEEEC---CCSSC-EEEEEE
T ss_pred CCCceEEEEecc--c--cCcccceEEccCCCCcEEEEEcCCC------EEEEEECCCCceeeEec---CCCCc-EEEEEE
Confidence 544332222110 0 111112211 234666666543 37788988776544322 11111 112222
Q ss_pred -ECCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 250 -FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 250 -~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
-++++++.|+.+. .+.+||+.+..-.
T Consensus 224 s~~~~~l~s~s~Dg------~i~iwd~~~~~~~ 250 (340)
T 4aow_A 224 SPDGSLCASGGKDG------QAMLWDLNEGKHL 250 (340)
T ss_dssp CTTSSEEEEEETTC------EEEEEETTTTEEE
T ss_pred CCCCCEEEEEeCCC------eEEEEEeccCcee
Confidence 2466777777643 4888998876533
No 171
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=89.40 E-value=18 Score=35.89 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=44.7
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
+.++++|..+++...+- ........-.++.+ ++++++.|+.+ ..+.++|+.+.+-...- .+ ....
T Consensus 125 ~tV~lWd~~tg~~~~~~---~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~~-~~----h~~~ 191 (420)
T 4gga_A 125 NSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNM-TS----HSAR 191 (420)
T ss_dssp TEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE-CC----CSSC
T ss_pred CEEEEEECCCCCEEEEE---EecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEEE-eC----CCCc
Confidence 46899999998776542 11111111222333 56677777765 35888999887653322 11 1122
Q ss_pred ceEEEECCEEEEEeCC
Q 010011 138 HSAALVGKRLFIFGGC 153 (520)
Q Consensus 138 hs~~~~~~~lyv~GG~ 153 (520)
..+...++.+++.|+.
T Consensus 192 v~~~s~~~~~l~sgs~ 207 (420)
T 4gga_A 192 VGSLSWNSYILSSGSR 207 (420)
T ss_dssp EEEEEEETTEEEEEET
T ss_pred eEEEeeCCCEEEEEeC
Confidence 2344456667777773
No 172
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=89.36 E-value=2 Score=43.45 Aligned_cols=147 Identities=11% Similarity=0.076 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEee-cccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISP-SVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
++.+++.|+.++ .+.++|+.+..-... ...+ ....-.+++.. ++.+++.|+.+ ..+.+
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~g---H~~~V~~l~f~p~~~~~l~s~s~D-----------~~v~i 191 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIG---AGGSITGLKFNPLNTNQFYASSME-----------GTTRL 191 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCS---SSCCCCEEEECSSCTTEEEEECSS-----------SCEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccC---CCCCEEEEEEeCCCCCEEEEEeCC-----------CEEEE
Confidence 455777887654 478888876543221 1111 11111233332 45667777742 34677
Q ss_pred EEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE
Q 010011 171 LNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (520)
Q Consensus 171 ~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~ 249 (520)
+|+++.....+........ ...++.. .++.+++.|+.++ .+..+|+.+..-..+. .....-.++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~------~h~~~v~~v~ 257 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINI--WFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLR------MHKKKVTHVA 257 (435)
T ss_dssp EETTSCEEEEEECCSSCSC--CCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSB------CCSSCEEEEE
T ss_pred eeccCCceeEEeccCCCCc--cEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEe------cccceEEeee
Confidence 8888776665542211111 1122222 3667788887543 4778887654321111 1111122233
Q ss_pred E---CCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 250 F---GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 250 ~---~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
+ ++.+++.|+.+. .|.+||+.+..
T Consensus 258 ~~p~~~~~~~s~s~d~------~v~iwd~~~~~ 284 (435)
T 4e54_B 258 LNPCCDWFLATASVDQ------TVKIWDLRQVR 284 (435)
T ss_dssp ECTTCSSEEEEEETTS------BCCEEETTTCC
T ss_pred ecCCCceEEEEecCcc------eeeEEeccccc
Confidence 2 234677776542 36788877653
No 173
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.25 E-value=17 Score=35.52 Aligned_cols=185 Identities=15% Similarity=0.144 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCc-eEEEE---CCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH-SAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 96 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h-s~~~~---~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
..++.|+.+ ..+.+||+.+.+-...-. ...+...... ..+.. ++.+++.|+.+ ..+.++
T Consensus 171 ~~l~s~s~D-----~~i~~wd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----------~~v~~w 233 (380)
T 3iz6_a 171 TRLITGSGD-----QTCVLWDVTTGQRISIFG-SEFPSGHTADVLSLSINSLNANMFISGSCD-----------TTVRLW 233 (380)
T ss_dssp SCEEEECTT-----SCEEEECTTTCCEEEEEC-CCSSSSCCSCEEEEEECSSSCCEEEEEETT-----------SCEEEE
T ss_pred CEEEEECCC-----CcEEEEEcCCCcEEEEee-cccCCCCccCeEEEEeecCCCCEEEEEECC-----------CeEEEE
Confidence 345556544 357888888776433210 1112211111 12222 45788888842 346677
Q ss_pred EcCcc--eEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCC-CC-C--CCCce
Q 010011 172 NTETF--VWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG-MV-L--SPRAG 244 (520)
Q Consensus 172 d~~t~--~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~-~~-p--~~R~~ 244 (520)
|+... ....+.. ..... .+++. .++..++.|+.++ .+..||+.+..-...-... .. . .+...
T Consensus 234 d~~~~~~~~~~~~~----h~~~v-~~v~~~p~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 234 DLRITSRAVRTYHG----HEGDI-NSVKFFPDGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp ETTTTCCCCEEECC----CSSCC-CEEEECTTSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCS
T ss_pred ECCCCCcceEEECC----cCCCe-EEEEEecCCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceE
Confidence 77522 1122210 00011 12222 2667788887654 3788898876544332211 00 0 01111
Q ss_pred eEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEee-eCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI-TTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 245 hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~-~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
..+...++++++.|+.+ ..+.+||+.+..-.... ........ ......+ ..++.+++.||.+..
T Consensus 303 ~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h~~--~v~~l~~--s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYSN------GDCYVWDTLLAEMVLNLGTLQNSHEG--RISCLGL--SSDGSALCTGSWDKN 367 (380)
T ss_dssp EEEECSSSSEEEEECTT------SCEEEEETTTCCEEEEECCSCSSCCC--CCCEEEE--CSSSSEEEEECTTSC
T ss_pred EEEECCCCCEEEEEECC------CCEEEEECCCCceEEEEecccCCCCC--ceEEEEE--CCCCCEEEEeeCCCC
Confidence 22223356677777653 34899998876543321 11011111 1111122 346677888887764
No 174
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=89.22 E-value=14 Score=34.29 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=37.4
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 199 ~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
.++. ++.|+.+ ..+..||..+.+-...-. . ....-.++....+..++.|+.. ..+.+||+++.
T Consensus 194 ~~~~-~~~~~~d------g~i~i~d~~~~~~~~~~~---~-~~~~i~~~~~~~~~~l~~~~~d------g~v~iwd~~~~ 256 (313)
T 3odt_A 194 DDGH-FISCSND------GLIKLVDMHTGDVLRTYE---G-HESFVYCIKLLPNGDIVSCGED------RTVRIWSKENG 256 (313)
T ss_dssp ETTE-EEEEETT------SEEEEEETTTCCEEEEEE---C-CSSCEEEEEECTTSCEEEEETT------SEEEEECTTTC
T ss_pred CCCe-EEEccCC------CeEEEEECCchhhhhhhh---c-CCceEEEEEEecCCCEEEEecC------CEEEEEECCCC
Confidence 3666 6666654 348889987655332211 0 1111122333333245566643 34899999988
Q ss_pred cEEEeee
Q 010011 279 LWTKVIT 285 (520)
Q Consensus 279 ~W~~l~~ 285 (520)
.......
T Consensus 257 ~~~~~~~ 263 (313)
T 3odt_A 257 SLKQVIT 263 (313)
T ss_dssp CEEEEEE
T ss_pred ceeEEEe
Confidence 7555443
No 175
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.21 E-value=16 Score=35.43 Aligned_cols=150 Identities=12% Similarity=0.092 Sum_probs=71.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE----CCEEEEEeCCCCCCCCCCcceeceeE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV----GKRLFIFGGCGKSSNTNDEVYYNDLY 169 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~----~~~lyv~GG~~~~~~~~~~~~~~~v~ 169 (520)
++.+++.|+.+ ..+.+||+.+..-...-. .+.. ..+.... ++.+++.|+. ...+.
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~~~v~ 169 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFN---FEET--VYSHHMSPVSTKHCLVAVGTR-----------GPKVQ 169 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEE---CSSC--EEEEEECSSCSSCCEEEEEES-----------SSSEE
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceecc---CCCc--eeeeEeecCCCCCcEEEEEcC-----------CCeEE
Confidence 44566666654 358889998877543321 1111 1122222 2346666663 24577
Q ss_pred EEEcCcceEEEcccCCCCCCCCcceeEEee-CC-EEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCC-----CC--
Q 010011 170 ILNTETFVWKRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSG-----MV-- 238 (520)
Q Consensus 170 ~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~-----~~-- 238 (520)
+||+.+.+....-. . ....-.++... ++ .+++.|+.++ .+..||+.+.. ...+.... ..
T Consensus 170 ~~d~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 170 LCDLKSGSCSHILQ--G--HRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp EEESSSSCCCEEEC--C--CCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred EEeCCCcceeeeec--C--CCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeecc
Confidence 88887653221110 0 01111122222 33 3777777553 37788886542 22221100 00
Q ss_pred --CCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEEecCCCcE
Q 010011 239 --LSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (520)
Q Consensus 239 --p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (520)
.........+.+ +++.++.|+.+. .+.+||+.+..-
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~ 279 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDN------RMRLWNSSNGEN 279 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCB
T ss_pred ccccccCceeEEEEcCCCCEEEEecCCC------eEEEEECCCCcc
Confidence 111111122222 455667776542 489999988653
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=89.16 E-value=14 Score=34.17 Aligned_cols=191 Identities=8% Similarity=-0.042 Sum_probs=96.3
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
+++..++.||+.... ...+++||+ +++........ ....-++++.. ++++|+..- ....+++||
T Consensus 104 i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~-----~~~~i~~~~ 168 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTEN-----QNNAIGRIT 168 (299)
T ss_dssp EEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEET-----TTTEEEEEC
T ss_pred eEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeC-----CCCEEEEEc
Confidence 334333457775432 245888998 66665543211 11222333333 567888642 124689999
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCccee
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~ 195 (520)
+ +.+......... ...-.+++.. +++||+.... .+.+++||+ +.++....... . ...-.+
T Consensus 169 ~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~--~-~~~~~~ 229 (299)
T 2z2n_A 169 E-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEII-----------GNKIGRITT-SGEITEFKIPT--P-NARPHA 229 (299)
T ss_dssp T-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSS--T-TCCEEE
T ss_pred C-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccC-----------CceEEEECC-CCcEEEEECCC--C-CCCcee
Confidence 9 777765432111 1111233333 4678886531 246889998 66666543211 1 111223
Q ss_pred EEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEe
Q 010011 196 CSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMID 274 (520)
Q Consensus 196 ~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd 274 (520)
++.. ++.+|+.... .+.+.+||+ +.+...+..... . ..-.+++..++.+|+... . +.+.+||
T Consensus 230 i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~~--~-~~~~~i~~~~g~l~v~~~-~------~~l~~~~ 292 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWG------ANKIGRLTS-NNIIEEYPIQIK--S-AEPHGICFDGETIWFAME-C------DKIGKLT 292 (299)
T ss_dssp EEECSTTCEEEEETT------TTEEEEEET-TTEEEEEECSSS--S-CCEEEEEECSSCEEEEET-T------TEEEEEE
T ss_pred EEECCCCCEEEeccC------CceEEEECC-CCceEEEeCCCC--C-CccceEEecCCCEEEEec-C------CcEEEEE
Confidence 3332 5678876422 245889998 455555543111 1 112233335567777543 1 3488888
Q ss_pred cCCCc
Q 010011 275 VDSGL 279 (520)
Q Consensus 275 ~~~~~ 279 (520)
+++++
T Consensus 293 ~~~~~ 297 (299)
T 2z2n_A 293 LIKDN 297 (299)
T ss_dssp EC---
T ss_pred cCccc
Confidence 87653
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=89.06 E-value=15 Score=34.40 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=88.7
Q ss_pred CeEEEEECCCCeEEeeecc-CCCCCCCCcceEEEECCEEEEE----cCCC------C--CCCCCcEEEEECCCCeEEeec
Q 010011 60 NQVHVFDTVNQTWSQPVIK-GSPPTPRDSHSCTTVGENLYVF----GGTD------G--MNPLRDLHILDTSSHTWISPS 126 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~-g~~P~~R~~hs~~~~~~~iyv~----GG~~------~--~~~~~~~~~yd~~t~~W~~~~ 126 (520)
..+++||+.+++...+... ...+..+....+..-++++|+. |... . ......+|++|+. .+...+.
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI 168 (296)
T ss_dssp TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence 4589999988887765311 1111112222222336778886 4311 0 1123479999987 5554433
Q ss_pred ccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcC-cceE---EEcccCCCCCCCCcceeEEe-eC
Q 010011 127 VRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVW---KRATTSGNPPSARDSHTCSS-WK 200 (520)
Q Consensus 127 ~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~-t~~W---~~v~~~~~~p~~r~~h~~~~-~~ 200 (520)
. .... -.+.+.. ++++++.+.. .+.+++|++. +.+. ..+- ......+ ..++. -+
T Consensus 169 ~--~~~~---~~gi~~s~dg~~lv~~~~-----------~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p---~~i~~d~~ 228 (296)
T 3e5z_A 169 R--DRVK---PNGLAFLPSGNLLVSDTG-----------DNATHRYCLNARGETEYQGVHF-TVEPGKT---DGLRVDAG 228 (296)
T ss_dssp C--CCSS---EEEEEECTTSCEEEEETT-----------TTEEEEEEECSSSCEEEEEEEE-CCSSSCC---CSEEEBTT
T ss_pred c--CCCC---CccEEECCCCCEEEEeCC-----------CCeEEEEEECCCCcCcCCCeEe-eCCCCCC---CeEEECCC
Confidence 1 1111 1233332 4555554431 2468888875 4444 1221 1111111 12333 36
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--C-CEEEEEecccCCCCccCcEEEEecCC
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--G-KNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~-~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
+.||+..+ +.+.+||++......+.. +.. -.+++.- + +.||+... +.+++|++++
T Consensus 229 G~l~v~~~--------~~v~~~~~~g~~~~~~~~----~~~--~~~~~f~~~d~~~L~v~t~--------~~l~~~~~~~ 286 (296)
T 3e5z_A 229 GLIWASAG--------DGVHVLTPDGDELGRVLT----PQT--TSNLCFGGPEGRTLYMTVS--------TEFWSIETNV 286 (296)
T ss_dssp SCEEEEET--------TEEEEECTTSCEEEEEEC----SSC--CCEEEEESTTSCEEEEEET--------TEEEEEECSC
T ss_pred CCEEEEcC--------CeEEEECCCCCEEEEEEC----CCC--ceeEEEECCCCCEEEEEcC--------CeEEEEEccc
Confidence 77888761 358999998666665553 222 1122221 2 35666542 2489999887
Q ss_pred Cc
Q 010011 278 GL 279 (520)
Q Consensus 278 ~~ 279 (520)
..
T Consensus 287 ~~ 288 (296)
T 3e5z_A 287 RG 288 (296)
T ss_dssp CB
T ss_pred cc
Confidence 65
No 178
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.85 E-value=16 Score=34.65 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=52.5
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
.+++.|+.+ ..+.+||..+.+-...- .+. ...-.++... ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 86 ~~l~~~~~d------g~i~v~d~~~~~~~~~~-~~~---~~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~ 150 (366)
T 3k26_A 86 PLLAVAGSR------GIIRIINPITMQCIKHY-VGH---GNAINELKFHPRDPNLLLSVSKD-----HALRLWNIQTDTL 150 (366)
T ss_dssp EEEEEEETT------CEEEEECTTTCCEEEEE-ESC---CSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTTTEE
T ss_pred CEEEEecCC------CEEEEEEchhceEeeee-cCC---CCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEeecCeE
Confidence 466666643 45888998876543311 111 1111122222 45677777654 3589999988765
Q ss_pred EeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc
Q 010011 123 ISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~ 176 (520)
...-. ...........+.. ++..++.|+. ...+.+||+.+.
T Consensus 151 ~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~ 193 (366)
T 3k26_A 151 VAIFG--GVEGHRDEVLSADYDLLGEKIMSCGM-----------DHSLKLWRINSK 193 (366)
T ss_dssp EEEEC--STTSCSSCEEEEEECTTSSEEEEEET-----------TSCEEEEESCSH
T ss_pred EEEec--ccccccCceeEEEECCCCCEEEEecC-----------CCCEEEEECCCC
Confidence 43210 11111111222222 3556666763 235777887654
No 179
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=88.69 E-value=18 Score=35.02 Aligned_cols=145 Identities=7% Similarity=-0.037 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEEC--CEEEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 96 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
++++.|+.+ ..+.+||+.+.+....-.. ......-.+++... +.+++.|+. ...+.++|+
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~-----------d~~i~iwd~ 148 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSI-----------RGATTLRDF 148 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEET-----------TTEEEEEET
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeC-----------CCEEEEEEC
Confidence 577777654 3588999987765543210 01111112333333 366666663 245778888
Q ss_pred CcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-C
Q 010011 174 ETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G 251 (520)
Q Consensus 174 ~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~ 251 (520)
.+.....+..... ....-.+++. .++.+++.|+.+ ..+..||+.......+.. .. ..-.++... +
T Consensus 149 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~----h~-~~v~~~~~~~~ 215 (383)
T 3ei3_B 149 SGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL----HK-AKVTHAEFNPR 215 (383)
T ss_dssp TSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC----SS-SCEEEEEECSS
T ss_pred CCCceEEEeccCC--CCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc----CC-CcEEEEEECCC
Confidence 8777666642211 1111122222 256677777754 358889986554444432 11 111222222 3
Q ss_pred CE-EEEEecccCCCCccCcEEEEecCC
Q 010011 252 KN-LFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 252 ~~-iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
+. +++.|+.+ ..+.+||+.+
T Consensus 216 ~~~~l~s~~~d------~~i~iwd~~~ 236 (383)
T 3ei3_B 216 CDWLMATSSVD------ATVKLWDLRN 236 (383)
T ss_dssp CTTEEEEEETT------SEEEEEEGGG
T ss_pred CCCEEEEEeCC------CEEEEEeCCC
Confidence 34 77777754 2488999887
No 180
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=88.48 E-value=17 Score=34.32 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=100.1
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
+++. +++.|+.+ ..+.++|..++.-...- .+. ..........-++++++.|+.+ ..+.+||+.+.
T Consensus 23 p~~~-~l~s~~~d------g~v~lWd~~~~~~~~~~-~~~--~~~v~~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~ 87 (304)
T 2ynn_A 23 PTEP-WVLTTLYS------GRVELWNYETQVEVRSI-QVT--ETPVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTG 87 (304)
T ss_dssp SSSS-EEEEEETT------SEEEEEETTTTEEEEEE-ECC--SSCEEEEEEEGGGTEEEEEETT-----SEEEEEETTTC
T ss_pred CCCC-EEEEEcCC------CcEEEEECCCCceeEEe-ecc--CCcEEEEEEeCCCCEEEEECCC-----CEEEEEECCCC
Confidence 4444 55666643 45788999887644321 111 1111111122245566667654 35888898876
Q ss_pred eEEe-ecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcc-eEE-EcccCCCCCCCCcceeE
Q 010011 121 TWIS-PSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWK-RATTSGNPPSARDSHTC 196 (520)
Q Consensus 121 ~W~~-~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~-~W~-~v~~~~~~p~~r~~h~~ 196 (520)
+-.. +. + ....-.+++.. ++.+++.|+. ...+.++|+.+. .-. .+.. ....-.++
T Consensus 88 ~~~~~~~--~---h~~~v~~~~~~~~~~~l~sgs~-----------D~~v~lWd~~~~~~~~~~~~~-----h~~~v~~v 146 (304)
T 2ynn_A 88 EKVVDFE--A---HPDYIRSIAVHPTKPYVLSGSD-----------DLTVKLWNWENNWALEQTFEG-----HEHFVMCV 146 (304)
T ss_dssp CEEEEEE--C---CSSCEEEEEECSSSSEEEEEET-----------TSCEEEEEGGGTTEEEEEECC-----CCSCEEEE
T ss_pred cEEEEEe--C---CCCcEEEEEEcCCCCEEEEECC-----------CCeEEEEECCCCcchhhhhcc-----cCCcEEEE
Confidence 5322 11 1 00111122222 3556667773 234667777654 211 1110 01111122
Q ss_pred Eee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE---CCEEEEEecccCCCCccCcEE
Q 010011 197 SSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLY 271 (520)
Q Consensus 197 ~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~~~~~~dv~ 271 (520)
+.. ++.+++.|+.++ .+..||+.+..-..... ....+.-...... ++.+++.|+.+ ..+.
T Consensus 147 ~~~p~~~~~l~sgs~D~------~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~s~D------~~i~ 211 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDD------LTIK 211 (304)
T ss_dssp EECTTCTTEEEEEETTS------EEEEEETTCSSCSEEEE---CCCTTCEEEEEECCSTTCCEEEEEETT------SEEE
T ss_pred EECCCCCCEEEEEeCCC------eEEEEECCCCCccceec---cCCcCcEEEEEEEEcCCCCEEEEEcCC------CeEE
Confidence 222 456777887653 37778875432111110 0011111111111 34566666653 3488
Q ss_pred EEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 272 MIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 272 ~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
+||+.+..-...-... ........+ ..++.+++.|+.+..
T Consensus 212 iWd~~~~~~~~~~~~h-----~~~v~~~~~--~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGH-----MSNVSFAVF--HPTLPIIISGSEDGT 251 (304)
T ss_dssp EEETTTTEEEEEEECC-----SSCEEEEEE--CSSSSEEEEEETTSC
T ss_pred EEeCCCCccceeeCCC-----CCCEEEEEE--CCCCCEEEEEcCCCe
Confidence 9999887533221111 111122222 235557777877654
No 181
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=88.42 E-value=17 Score=34.29 Aligned_cols=151 Identities=12% Similarity=-0.009 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
++.||+..-. ...+++||+.+........ +. + -.+++.. ++++|+..+ ..+++||
T Consensus 24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----~~-~-~~~i~~~~dG~l~v~~~-------------~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM----DA-P-VSSVALRQSGGYVATIG-------------TKFCALN 79 (297)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEEC----SS-C-EEEEEEBTTSSEEEEET-------------TEEEEEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEeC----CC-c-eEEEEECCCCCEEEEEC-------------CeEEEEE
Confidence 4678877642 3578999998876544331 11 1 1122222 456666432 4689999
Q ss_pred cCcceEEEcccCCC-CCCCCcceeEEeeCCEEEEEecCCCC-----CcccCceEEEECCCCcEEEeeCCCCCCCCCceeE
Q 010011 173 TETFVWKRATTSGN-PPSARDSHTCSSWKNKIIVIGGEDGH-----DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS 246 (520)
Q Consensus 173 ~~t~~W~~v~~~~~-~p~~r~~h~~~~~~~~lyv~GG~~~~-----~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs 246 (520)
+++.+++.+..... .+..+....++.-++++|+-.-.... ......++++|+.. +...+... .. .-..
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~--~~---~png 153 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ--VD---ISNG 153 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE--ES---BEEE
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeec--cc---cccc
Confidence 99988887653211 12112222222236777763211110 01234688888763 33333220 11 1122
Q ss_pred EEEE--CCEEEEEecccCCCCccCcEEEEec--CCCcE
Q 010011 247 TVAF--GKNLFVFGGFTDSQNLYDDLYMIDV--DSGLW 280 (520)
Q Consensus 247 ~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~--~~~~W 280 (520)
.+.. ++.+|+..... +.|++||+ ++...
T Consensus 154 i~~spdg~~lyv~~~~~------~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLS------YSVDAFDYDLQTGQI 185 (297)
T ss_dssp EEECTTSCEEEEEEGGG------TEEEEEEECTTTCCE
T ss_pred eEEcCCCCEEEEecCCC------CcEEEEeccCCCCcc
Confidence 3332 34577776542 45888886 55554
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=88.26 E-value=17 Score=34.19 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecccCCCCC-CCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~-~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
.+++++.|..+ +.++++|..+.+ |+... +. ....+..+..++++++. + .+.++.
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs-~------------~~~V~~ 60 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFS-Y------------SKGAKM 60 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEE-C------------BSEEEE
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEe-C------------CCCEEE
Confidence 35677776532 578999997776 76532 11 12223333346788883 2 245889
Q ss_pred EEcCc-ceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCc-EEEeeCCCC-CCCCCceeE
Q 010011 171 LNTET-FVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGM-VLSPRAGHS 246 (520)
Q Consensus 171 ~d~~t-~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~-W~~~~~~~~-~p~~R~~hs 246 (520)
||++. ..|+.-. +.....+++... ++.+++..... ...++.+|++... |+.-...+. .+.......
T Consensus 61 ~d~~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 61 ITRDGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp ECTTSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCC
T ss_pred ECCCCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCc
Confidence 99843 3466443 111122333333 66666654321 1357888886543 443221110 111111122
Q ss_pred EEEECCEEEEEecccCCCCccCcEEEEecCCC-cEEE
Q 010011 247 TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTK 282 (520)
Q Consensus 247 ~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~-~W~~ 282 (520)
....++.+++.... ...+.+||++.+ .|+.
T Consensus 131 ~~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 131 NKNKKGNYLVPLFA------TSEVREIAPNGQLLNSV 161 (276)
T ss_dssp EECTTSCEEEEETT------TTEEEEECTTSCEEEEE
T ss_pred eECCCCCEEEEecC------CCEEEEECCCCCEEEEE
Confidence 33445666655432 234899998833 3553
No 183
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=88.11 E-value=15 Score=39.98 Aligned_cols=161 Identities=13% Similarity=0.131 Sum_probs=84.7
Q ss_pred CCE-EEEEcCCCCCCCCCcEEEEECCCC--e-EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeE
Q 010011 94 GEN-LYVFGGTDGMNPLRDLHILDTSSH--T-WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (520)
Q Consensus 94 ~~~-iyv~GG~~~~~~~~~~~~yd~~t~--~-W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~ 169 (520)
+++ |++... ......+++|++|+.+. . |..+.. ...... ......++.||+..... .....++
T Consensus 278 DG~~l~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~-~~~~~dg~~l~~~s~~~--------~~~~~l~ 344 (741)
T 1yr2_A 278 DGRWVVITSS-EGTDPVNTVHVARVTNGKIGPVTALIP---DLKAQW-DFVDGVGDQLWFVSGDG--------APLKKIV 344 (741)
T ss_dssp TSCEEEEEEE-CTTCSCCEEEEEEEETTEECCCEEEEC---SSSSCE-EEEEEETTEEEEEECTT--------CTTCEEE
T ss_pred CCCEEEEEEE-ccCCCcceEEEEECCCCCCcccEEecC---CCCceE-EEEeccCCEEEEEECCC--------CCCCEEE
Confidence 444 444443 22223568999999877 6 776652 111111 11223567787775421 1135688
Q ss_pred EEEcCc--ceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEE
Q 010011 170 ILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (520)
Q Consensus 170 ~~d~~t--~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~ 247 (520)
++|+.+ ..|+.+..... .....+...++.+++....++ ...++.+|+....-..+.. +.... ...
T Consensus 345 ~~d~~~~~~~~~~l~~~~~----~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~~----~~~~~-v~~ 411 (741)
T 1yr2_A 345 RVDLSGSTPRFDTVVPESK----DNLESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVSL----PGIGS-ASG 411 (741)
T ss_dssp EEECSSSSCEEEEEECCCS----SEEEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECBC----SSSCE-EEE
T ss_pred EEeCCCCccccEEEecCCC----CeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeeccC----CCCeE-EEE
Confidence 999887 57988753211 111223334788877765443 3468888976554444432 21111 111
Q ss_pred EEE--CC-EEEEE-ecccCCCCccCcEEEEecCCCcEEEee
Q 010011 248 VAF--GK-NLFVF-GGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 248 ~~~--~~-~iyv~-GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
+.. ++ .+++. .+.. ....++.||+.+++.+.+.
T Consensus 412 ~~~s~d~~~l~~~~ss~~----~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 412 LSGRPGDRHAYLSFSSFT----QPATVLALDPATAKTTPWE 448 (741)
T ss_dssp EECCBTCSCEEEEEEETT----EEEEEEEEETTTTEEEECS
T ss_pred eecCCCCCEEEEEEcCCC----CCCEEEEEECCCCcEEEEe
Confidence 111 22 33332 2221 2356899999988866653
No 184
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=88.05 E-value=12 Score=35.55 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=35.7
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeee-ccCCCCCCCCcceEEEE----CCEEEEEcCCCCCCCCCcEEEE
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-IKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~-~~g~~P~~R~~hs~~~~----~~~iyv~GG~~~~~~~~~~~~y 115 (520)
.+++ +++.|+.+ ..+.+||+.++....+. ..+.. ..-.++.+ ++.+++.|+.+ ..+.++
T Consensus 23 ~~g~-~lasgs~D------~~v~lwd~~~~~~~~~~~l~gH~----~~V~~v~~~~~~~~~~l~s~s~D-----~~v~iW 86 (316)
T 3bg1_A 23 YYGT-RLATCSSD------RSVKIFDVRNGGQILIADLRGHE----GPVWQVAWAHPMYGNILASCSYD-----RKVIIW 86 (316)
T ss_dssp GGGC-EEEEEETT------TEEEEEEEETTEEEEEEEEECCS----SCEEEEEECCGGGSSCEEEEETT-----SCEEEE
T ss_pred CCCC-EEEEEeCC------CeEEEEEecCCCcEEEEEEcCCC----ccEEEEEeCCCCCCCEEEEEECC-----CEEEEE
Confidence 3444 55666643 45778888776543221 11111 11112222 24667777654 347788
Q ss_pred ECCCCeEEee
Q 010011 116 DTSSHTWISP 125 (520)
Q Consensus 116 d~~t~~W~~~ 125 (520)
|+.+..|...
T Consensus 87 d~~~~~~~~~ 96 (316)
T 3bg1_A 87 REENGTWEKS 96 (316)
T ss_dssp CCSSSCCCEE
T ss_pred ECCCCcceEE
Confidence 8887766443
No 185
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=88.05 E-value=19 Score=34.44 Aligned_cols=190 Identities=12% Similarity=0.072 Sum_probs=84.5
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCC--CeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSS--HTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLY 169 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~ 169 (520)
+++.++.|+.+ ..+.++|+.. ..+..+... ......-..+.. ++.+++.|+.+ ..+.
T Consensus 118 ~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D-----------~~i~ 178 (330)
T 2hes_X 118 DGYYLATCSRD-----KSVWIWETDESGEEYECISVL---QEHSQDVKHVIWHPSEALLASSSYD-----------DTVR 178 (330)
T ss_dssp TSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEE---CCCSSCEEEEEECSSSSEEEEEETT-----------SCEE
T ss_pred CCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEe---ccCCCceEEEEECCCCCEEEEEcCC-----------CeEE
Confidence 45667777654 3477888742 234332211 000111122222 45677777742 3466
Q ss_pred EEEcCcceEEEcccCCCCCCCCcceeEEee-C--CEEEEEecCCCCCcccCceEEEECCC------CcEEEeeCCCCCCC
Q 010011 170 ILNTETFVWKRATTSGNPPSARDSHTCSSW-K--NKIIVIGGEDGHDYYLSDVHILDTDT------LTWKELNTSGMVLS 240 (520)
Q Consensus 170 ~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~-~--~~lyv~GG~~~~~~~~~~i~~yd~~t------~~W~~~~~~~~~p~ 240 (520)
++|..+..|+.+....... . .-.++... + +..++.|+.++. +.+||+.+ ..|..+..... ..
T Consensus 179 iW~~~~~~~~~~~~~~~h~-~-~v~~~~~~~~~~~~~l~s~s~D~~------v~iw~~~~~~~~~~~~~~~~~~~~~-~h 249 (330)
T 2hes_X 179 IWKDYDDDWECVAVLNGHE-G-TVWSSDFDKTEGVFRLCSGSDDST------VRVWKYMGDDEDDQQEWVCEAILPD-VH 249 (330)
T ss_dssp EEEEETTEEEEEEEECCCS-S-CEEEEEECCSSSSCEEEEEETTSC------EEEEEEEEECTTSCEEEEEEEECCS-CC
T ss_pred EEECCCCCeeEEEEccCCC-C-cEEEEEecCCCCeeEEEEEeCCCe------EEEEEecCCCccccceeEEeeeccc-cc
Confidence 6776666665543211110 0 11112221 2 345666665432 44555432 24554443110 01
Q ss_pred CCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 241 PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 241 ~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
...-.+++...+.+++.||.+. .+.+||..+..|..+........ ......+.+.+..++.+++.||.+..
T Consensus 250 ~~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~~~h~-~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 250 KRQVYNVAWGFNGLIASVGADG------VLAVYEEVDGEWKVFAKRALCHG-VYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp SSCEEEEEECTTSCEEEEETTS------CEEEEEEETTEEEEEEEESCTTT-TSCEEEEEEC-----CCEEEEETTSE
T ss_pred ccceEEEEEcCCCEEEEEeCCC------EEEEEEcCCCceEEEeccccccc-cceEEEEEEecCCCceEEEEecCCCc
Confidence 1222233333455667777532 38899998888876543211111 11112222222225667778876653
No 186
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=87.82 E-value=22 Score=34.95 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
+++.++.|+.+ ..+.+||+.+.+-...- .+. ...-.+++.. ++..++.|+. ...+.++|
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~-~~h---~~~v~~~~~~p~~~~l~s~s~-----------d~~v~iwd 193 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMIL-QGH---EQDIYSLDYFPSGDKLVSGSG-----------DRTVRIWD 193 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEE-CCC---SSCEEEEEECTTSSEEEEEET-----------TSEEEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEE-ccC---CCCEEEEEEcCCCCEEEEecC-----------CCcEEEEE
Confidence 56677777654 35888999887653321 111 1111122222 3455566663 24577888
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCC--CCCCceeEEE
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMV--LSPRAGHSTV 248 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~--p~~R~~hs~~ 248 (520)
+.+.+....-.. .....+++.. ++.+++.|+.++ .+..||+.+..-......... ......-.++
T Consensus 194 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 194 LRTGQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp TTTTEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred CCCCeeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 887664433211 0111222222 567888887653 378889887654332210000 0011111222
Q ss_pred EE--CCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 249 AF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 249 ~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
.+ +++.++.|+.+. .+.+||+.+.
T Consensus 263 ~~~~~g~~l~s~s~d~------~v~~wd~~~~ 288 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDR------SVKLWNLQNA 288 (393)
T ss_dssp EECTTSSEEEEEETTS------EEEEEEC---
T ss_pred EECCCCCEEEEEeCCC------EEEEEECCCC
Confidence 22 456677777542 3788887654
No 187
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=87.80 E-value=20 Score=34.47 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=35.5
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEEC
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
+..++++.||+.+..+... ..-.+|.+|..+++...+..... ....-..++.-++.||+.... -..+.+|++
T Consensus 56 ~~spdg~~l~~~~~~~~~~-~~v~~~~~~~~~g~~~~~~~~~~--~~~~p~~~~~dg~~l~~~~~~-----~~~v~~~~~ 127 (361)
T 3scy_A 56 IPSADGKFVYSVNEFSKDQ-AAVSAFAFDKEKGTLHLLNTQKT--MGADPCYLTTNGKNIVTANYS-----GGSITVFPI 127 (361)
T ss_dssp EECTTSSEEEEEECCSSTT-CEEEEEEEETTTTEEEEEEEEEC--SSSCEEEEEECSSEEEEEETT-----TTEEEEEEB
T ss_pred EECCCCCEEEEEEccCCCC-CcEEEEEEeCCCCcEEEeeEecc--CCCCcEEEEECCCEEEEEECC-----CCEEEEEEe
Confidence 3446677787766532111 11224555666677776542111 111112223334456665432 245788887
Q ss_pred CC
Q 010011 118 SS 119 (520)
Q Consensus 118 ~t 119 (520)
.+
T Consensus 128 ~~ 129 (361)
T 3scy_A 128 GQ 129 (361)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 188
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=87.77 E-value=27 Score=35.92 Aligned_cols=175 Identities=10% Similarity=0.086 Sum_probs=81.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
+++.++.|+.+ ..+.+||.....-..+. + . ... -.+++. .++++++.|+. ...+.++|
T Consensus 396 dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~--~-~-~~~-v~~~~~s~d~~~l~~~~~-----------d~~v~~w~ 454 (577)
T 2ymu_A 396 DGQTIASASDD-----KTVKLWNRNGQLLQTLT--G-H-SSS-VWGVAFSPDDQTIASASD-----------DKTVKLWN 454 (577)
T ss_dssp TSSCEEEEETT-----SEEEEECTTCCEEEEEE--C-C-SSC-EEEEEECTTSSEEEEEET-----------TSEEEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCEEEEec--C-C-CCC-eEEEEECCCCCEEEEEcC-----------CCEEEEEE
Confidence 45556666543 34677775443333222 1 1 110 111222 24566666663 13466777
Q ss_pred cCcceEEEcccCCCCCCCCcceeEE-eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEEC
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG 251 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~ 251 (520)
........+... .. .-.+++ ..++++++.|+.++ .+.+||.....-..+.. ........+..-+
T Consensus 455 ~~~~~~~~~~~~----~~-~v~~~~~spd~~~las~~~d~------~i~iw~~~~~~~~~~~~----h~~~v~~l~~s~d 519 (577)
T 2ymu_A 455 RNGQLLQTLTGH----SS-SVRGVAFSPDGQTIASASDDK------TVKLWNRNGQLLQTLTG----HSSSVRGVAFSPD 519 (577)
T ss_dssp TTSCEEEEEECC----SS-CEEEEEECTTSCEEEEEETTS------EEEEEETTSCEEEEEEC----CSSCEEEEEECTT
T ss_pred CCCCEEEEEcCC----CC-CEEEEEEcCCCCEEEEEeCCC------EEEEEcCCCCEEEEEeC----CCCCEEEEEEcCC
Confidence 765554444311 11 112222 23677777777543 37778865444333332 1111111122235
Q ss_pred CEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 252 ~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
+++++.|+.+. .|.+||........+... .....+..+ ..++..++.||.+..
T Consensus 520 g~~l~s~~~dg------~v~lwd~~~~~~~~~~~h------~~~v~~~~f--s~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 520 GQTIASASDDK------TVKLWNRNGQLLQTLTGH------SSSVWGVAF--SPDGQTIASASSDKT 572 (577)
T ss_dssp SSCEEEEETTS------EEEEECTTSCEEEEEECC------SSCEEEEEE--CTTSSCEEEEETTSC
T ss_pred CCEEEEEECcC------EEEEEeCCCCEEEEEcCC------CCCEEEEEE--cCCCCEEEEEeCCCE
Confidence 66677776532 388888765444333221 111122222 345666677776653
No 189
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=87.46 E-value=18 Score=33.49 Aligned_cols=194 Identities=11% Similarity=0.061 Sum_probs=86.7
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~y 115 (520)
++...+++. ++.|+.+ ..+.+||..+..-...... . ...-.+++.. ++.+++.|+.++ .+.++
T Consensus 23 ~~~~~~~~~-l~s~~~d------g~v~vw~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~ 86 (313)
T 3odt_A 23 DVVAVDDSK-VASVSRD------GTVRLWSKDDQWLGTVVYT-G---QGFLNSVCYDSEKELLLFGGKDT-----MINGV 86 (313)
T ss_dssp EEEEEETTE-EEEEETT------SEEEEEEESSSEEEEEEEE-C---SSCEEEEEEETTTTEEEEEETTS-----CEEEE
T ss_pred EEEecCCCE-EEEEEcC------CcEEEEECCCCEEEEEeec-C---CccEEEEEECCCCCEEEEecCCC-----eEEEE
Confidence 334455664 4555532 4588899877664442211 1 1111222222 556667776543 46666
Q ss_pred ECCCCe-EEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcce
Q 010011 116 DTSSHT-WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (520)
Q Consensus 116 d~~t~~-W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h 194 (520)
++.... ...+. ..............++.+++.|+. ...+.++|.......... ...+....
T Consensus 87 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~----~~~~v~~~ 148 (313)
T 3odt_A 87 PLFATSGEDPLY---TLIGHQGNVCSLSFQDGVVISGSW-----------DKTAKVWKEGSLVYNLQA----HNASVWDA 148 (313)
T ss_dssp ETTCCTTSCC-C---EECCCSSCEEEEEEETTEEEEEET-----------TSEEEEEETTEEEEEEEC----CSSCEEEE
T ss_pred EeeecCCCCccc---chhhcccCEEEEEecCCEEEEEeC-----------CCCEEEEcCCcEEEeccc----CCCceeEE
Confidence 665421 11111 011111112223335556666663 234667773332222221 11111111
Q ss_pred eEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEe
Q 010011 195 TCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMID 274 (520)
Q Consensus 195 ~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd 274 (520)
.....++.+++.|+.++ .+..||.... -..+.. .........+..-++. ++.|+.. ..+.+||
T Consensus 149 ~~~~~~~~~l~~~~~d~------~i~i~d~~~~-~~~~~~---~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d 211 (313)
T 3odt_A 149 KVVSFSENKFLTASADK------TIKLWQNDKV-IKTFSG---IHNDVVRHLAVVDDGH-FISCSND------GLIKLVD 211 (313)
T ss_dssp EEEETTTTEEEEEETTS------CEEEEETTEE-EEEECS---SCSSCEEEEEEEETTE-EEEEETT------SEEEEEE
T ss_pred EEccCCCCEEEEEECCC------CEEEEecCce-EEEEec---cCcccEEEEEEcCCCe-EEEccCC------CeEEEEE
Confidence 11122566677776543 4777883321 112211 1222222233344566 6666653 3489999
Q ss_pred cCCCcEE
Q 010011 275 VDSGLWT 281 (520)
Q Consensus 275 ~~~~~W~ 281 (520)
+.+..-.
T Consensus 212 ~~~~~~~ 218 (313)
T 3odt_A 212 MHTGDVL 218 (313)
T ss_dssp TTTCCEE
T ss_pred CCchhhh
Confidence 9876533
No 190
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=87.40 E-value=21 Score=34.16 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEEC---CEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG---KRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~---~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
++.+++.|+.++ .+.++|..+..|..+........ .-.++.... +..++.|+.+ ..+.+
T Consensus 164 ~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~D-----------~~v~i 225 (330)
T 2hes_X 164 SEALLASSSYDD-----TVRIWKDYDDDWECVAVLNGHEG--TVWSSDFDKTEGVFRLCSGSDD-----------STVRV 225 (330)
T ss_dssp SSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSS--CEEEEEECCSSSSCEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccCCCC--cEEEEEecCCCCeeEEEEEeCC-----------CeEEE
Confidence 456777777653 47777877777765442111000 001122222 2355556631 22444
Q ss_pred EEcCc------ceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCce
Q 010011 171 LNTET------FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 244 (520)
Q Consensus 171 ~d~~t------~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~ 244 (520)
+|+.+ ..|..+..... .....-.+++...+.+++.||.++ .+.+||..+..|..+.... .......
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~-~~h~~~~ 297 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGADG------VLAVYEEVDGEWKVFAKRA-LCHGVYE 297 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETTS------CEEEEEEETTEEEEEEEES-CTTTTSC
T ss_pred EEecCCCccccceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCCC------EEEEEEcCCCceEEEeccc-cccccce
Confidence 44432 24544432110 011122223333445667777543 3778888888887654310 0111101
Q ss_pred eEEEE-E---CCEEEEEecccCCCCccCcEEEEecCC
Q 010011 245 HSTVA-F---GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 245 hs~~~-~---~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
..++. . ++++++.||.+. .+.+||+++
T Consensus 298 v~~v~~~~~~~~~~las~s~Dg------~v~~W~~~~ 328 (330)
T 2hes_X 298 INVVKWLELNGKTILATGGDDG------IVNFWSLEK 328 (330)
T ss_dssp EEEEEEC-----CCEEEEETTS------EEEEEEC--
T ss_pred EEEEEEecCCCceEEEEecCCC------cEEEEEecc
Confidence 12222 1 356777777643 377777654
No 191
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=87.29 E-value=6.7 Score=39.42 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=31.8
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEEecC
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVD 276 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (520)
..+++.|+.++ .+.+||..+.. -..+.. ....-.++... +..+++.||..+ .|.+||+.
T Consensus 290 ~~~l~tg~~dg------~v~vwd~~~~~~~~~~~~~-----h~~~v~~i~~sp~~~~~l~s~~~d~------~i~iwd~~ 352 (430)
T 2xyi_A 290 EFILATGSADK------TVALWDLRNLKLKLHSFES-----HKDEIFQVQWSPHNETILASSGTDR------RLHVWDLS 352 (430)
T ss_dssp TTEEEEEETTS------EEEEEETTCTTSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTS------CCEEEEGG
T ss_pred CCEEEEEeCCC------eEEEEeCCCCCCCeEEeec-----CCCCEEEEEECCCCCCEEEEEeCCC------cEEEEeCC
Confidence 34788887653 48888887532 111211 01111122222 335777777643 38888887
Q ss_pred C
Q 010011 277 S 277 (520)
Q Consensus 277 ~ 277 (520)
.
T Consensus 353 ~ 353 (430)
T 2xyi_A 353 K 353 (430)
T ss_dssp G
T ss_pred C
Confidence 6
No 192
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=87.24 E-value=16 Score=35.12 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=75.0
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEE-EECCEEEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
+.+|+++-. -..+++||+.+.+...... +. .-.+.+ .-++++++... ..+++||+
T Consensus 61 ~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----~~--~v~~i~~~~dg~l~v~~~-------------~gl~~~d~ 116 (326)
T 2ghs_A 61 GTAWWFNIL-----ERELHELHLASGRKTVHAL----PF--MGSALAKISDSKQLIASD-------------DGLFLRDT 116 (326)
T ss_dssp TEEEEEEGG-----GTEEEEEETTTTEEEEEEC----SS--CEEEEEEEETTEEEEEET-------------TEEEEEET
T ss_pred CEEEEEECC-----CCEEEEEECCCCcEEEEEC----CC--cceEEEEeCCCeEEEEEC-------------CCEEEEEC
Confidence 567777532 2468999999887655431 11 112222 24678877542 24899999
Q ss_pred CcceEEEcccCCC-CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-C
Q 010011 174 ETFVWKRATTSGN-PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G 251 (520)
Q Consensus 174 ~t~~W~~v~~~~~-~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~ 251 (520)
.+.+++.+..... .+..+.....+.-++++|+.............+++|| +.+...+... . . .....+.. +
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~--~-~~~~i~~s~d 189 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--I--S-IPNSICFSPD 189 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--E--S-SEEEEEECTT
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--C--c-ccCCeEEcCC
Confidence 8888876642211 1111111122222567776432111111235689999 4666554320 0 1 11123322 3
Q ss_pred C-EEEEEecccCCCCccCcEEEEecC
Q 010011 252 K-NLFVFGGFTDSQNLYDDLYMIDVD 276 (520)
Q Consensus 252 ~-~iyv~GG~~~~~~~~~dv~~yd~~ 276 (520)
+ .+|+.... .+.|++||+.
T Consensus 190 g~~lyv~~~~------~~~I~~~d~~ 209 (326)
T 2ghs_A 190 GTTGYFVDTK------VNRLMRVPLD 209 (326)
T ss_dssp SCEEEEEETT------TCEEEEEEBC
T ss_pred CCEEEEEECC------CCEEEEEEcc
Confidence 3 57776432 2458999975
No 193
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.08 E-value=18 Score=35.78 Aligned_cols=192 Identities=14% Similarity=0.147 Sum_probs=100.7
Q ss_pred EEEEECCC--CeEEeeeccCCCCCCCCcceEEEE---CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCC--
Q 010011 62 VHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA-- 134 (520)
Q Consensus 62 ~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~-- 134 (520)
+++++... .+|..+.. .+....-++++.. .+.||+.+.... .-.-+++.+-...+|+.+......+..
T Consensus 33 l~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~~~~~~~ 107 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPAFNKAPE 107 (394)
T ss_dssp EEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC-
T ss_pred eEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCccccCCCccc
Confidence 67777655 68998631 1112223344443 457887653210 112477776667899987632111211
Q ss_pred C-----CCc--eEEEE----CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC--------------C
Q 010011 135 R-----EGH--SAALV----GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP--------------S 189 (520)
Q Consensus 135 r-----~~h--s~~~~----~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p--------------~ 189 (520)
+ ..+ +++.. .+.||+.+. ...+++.+-...+|+.+......| .
T Consensus 108 ~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 108 GETGRVVDHVFWLTPGHASEPGTWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp ---CCCCCEEEEEEECCTTSTTCEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred ccccccccceeEEEeCCCCCCCEEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCC
Confidence 1 111 22232 456776532 235788877788999885311111 1
Q ss_pred CCcceeEEee---CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCC---CCCCC-----CceeEEEEEC---CEEE
Q 010011 190 ARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG---MVLSP-----RAGHSTVAFG---KNLF 255 (520)
Q Consensus 190 ~r~~h~~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~---~~p~~-----R~~hs~~~~~---~~iy 255 (520)
....++++.. .+.||+..+. ..+++.+-...+|+.+.... .+|.+ ...+.++... +.||
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~ 248 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILY 248 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEE
T ss_pred CCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEE
Confidence 1223344433 3567765321 23777777788999885311 11211 2234444432 5566
Q ss_pred EEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 256 VFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 256 v~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
+-.+ ..|++.+-...+|+.+..
T Consensus 249 vg~~--------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 249 QQNH--------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEET--------TEEEEEETTTTEEECGGG
T ss_pred EEcC--------CeEEEeCCCCCcceECCC
Confidence 6321 238888888899998854
No 194
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=86.90 E-value=26 Score=37.43 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=33.7
Q ss_pred ceeEEEEcCcceE-EEcccCCCCCCCCcceeEE--eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 010011 166 NDLYILNTETFVW-KRATTSGNPPSARDSHTCS--SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 166 ~~v~~~d~~t~~W-~~v~~~~~~p~~r~~h~~~--~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
..++++|+.+.+- ..+...............+ .-+++++++...... ....++.+|+.+.+...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ--NVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS--CEEEEEEEETTTCCEEEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC--CeEEEEEEeCCCCcceEE
Confidence 4788999887662 4443110000001111112 226776655543222 235689999998876655
No 195
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.87 E-value=7.3 Score=42.61 Aligned_cols=144 Identities=12% Similarity=0.088 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
++.|++.||.. +-+++||+.+.+++..... .......-.+++.. ++.|++- . ...+.+||
T Consensus 482 ~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lWig-t------------~~Gl~~~~ 542 (758)
T 3ott_A 482 EGNVWVLLYNN-----KGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLWVG-F------------HGGVMRIN 542 (758)
T ss_dssp TSCEEEEETTC-----SSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEEEE-E------------TTEEEEEC
T ss_pred CCCEEEEccCC-----CCcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEEEE-e------------cCceEEEe
Confidence 35677765543 3589999999999876421 11111111122222 3567763 3 13588999
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECC
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK 252 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~ 252 (520)
+.+.+++.... ..+|. ....+++..++.|++-.. +.+.+||+++.+..... ++......++....+
T Consensus 543 ~~~~~~~~~~~-~gl~~-~~i~~i~~~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 608 (758)
T 3ott_A 543 PKDESQQSISF-GSFSN-NEILSMTCVKNSIWVSTT--------NGLWIIDRKTMDARQQN----MTNKRFTSLLFDPKE 608 (758)
T ss_dssp C--CCCCBCCC-CC----CCEEEEEEETTEEEEEES--------SCEEEEETTTCCEEEC------CCCCCSEEEEETTT
T ss_pred cCCCceEEecc-cCCCc-cceEEEEECCCCEEEECC--------CCeEEEcCCCceeEEec----CCCCceeeeEEECCC
Confidence 98887766532 12332 223344445788887542 34889999998877543 222222222323234
Q ss_pred EEEEEecccCCCCccCcEEEEecCC
Q 010011 253 NLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 253 ~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
.-+.|||.. .+..||++.
T Consensus 609 G~l~fG~~~-------Gl~~f~p~~ 626 (758)
T 3ott_A 609 DCVYLGGAD-------GFGISHSNL 626 (758)
T ss_dssp TEEEEECBS-------EEEEEEC--
T ss_pred CcEEEecCC-------ceEEEChhh
Confidence 445667753 378888874
No 196
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=86.69 E-value=17 Score=32.59 Aligned_cols=150 Identities=16% Similarity=0.237 Sum_probs=83.0
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCC--CeEEeeccc---CCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCC
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSS--HTWISPSVR---GEGPEAREGHSAALV--GKRLFIFGGCGKSSNTND 161 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~---g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~ 161 (520)
+++.+++++|+|=| +.+|+++... .......+. ..+|.. .. ++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG--------- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG--------- 72 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET---------
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC---------
Confidence 45567999999976 3578887654 222221111 123432 22 23332 578999988
Q ss_pred cceeceeEEEEcCcce-EEEcccCCCCCC--CCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEE-----ee
Q 010011 162 EVYYNDLYILNTETFV-WKRATTSGNPPS--ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LN 233 (520)
Q Consensus 162 ~~~~~~v~~~d~~t~~-W~~v~~~~~~p~--~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----~~ 233 (520)
+..|+|+..+.. =+.+...| .|. .....++...++++|+|-| +..|+||..+++-.. +.
T Consensus 73 ----~~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gyPr~i~ 139 (195)
T 1itv_A 73 ----RQVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASEVD 139 (195)
T ss_dssp ----TEEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEEHH
T ss_pred ----CEEEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCCccChh
Confidence 456777754322 12233222 222 2333344434789999966 358999987754221 11
Q ss_pred -CCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 234 -TSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 234 -~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.-..+ |..-.++...++.+|+|-|. ..|+||..+..
T Consensus 140 ~~w~Gv--p~~idaa~~~~g~~Yffkg~--------~y~~~~~~~~~ 176 (195)
T 1itv_A 140 RMFPGV--PLDTHDVFQFREKAYFCQDR--------FYWRVSSRSEL 176 (195)
T ss_dssp HHSTTS--CSSCSEEEEETTEEEEEETT--------EEEEEECCTTC
T ss_pred hcCCCC--CCCCCEEEEeCCeEEEEeCC--------EEEEEECCccE
Confidence 00011 22334555667999999885 37899987765
No 197
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=86.44 E-value=21 Score=33.65 Aligned_cols=217 Identities=12% Similarity=-0.018 Sum_probs=100.8
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEE
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~ 113 (520)
...+...+++.||+.+-. .+.+++|++ +++...+... .. .-.+++.. +++||+.... ...++
T Consensus 48 egp~~~~~g~~l~~~d~~------~~~i~~~~~-~g~~~~~~~~----~~-~~~gl~~d~dG~l~v~~~~-----~~~v~ 110 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLV------GRRVLGWRE-DGTVDVLLDA----TA-FTNGNAVDAQQRLVHCEHG-----RRAIT 110 (305)
T ss_dssp EEEEEEGGGTEEEEEETT------TTEEEEEET-TSCEEEEEES----CS-CEEEEEECTTSCEEEEETT-----TTEEE
T ss_pred cCCeEeCCCCEEEEEECC------CCEEEEEeC-CCCEEEEeCC----CC-ccceeeECCCCCEEEEECC-----CCEEE
Confidence 344455667777776542 245888988 4554443311 11 11222222 5678776321 24688
Q ss_pred EEECCCCeEEeecccC-CCCCCCCCceEEEECCEEEEE----eCCCCC--CCCCCcceeceeEEEEcCcceEEEcccCCC
Q 010011 114 ILDTSSHTWISPSVRG-EGPEAREGHSAALVGKRLFIF----GGCGKS--SNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (520)
Q Consensus 114 ~yd~~t~~W~~~~~~g-~~p~~r~~hs~~~~~~~lyv~----GG~~~~--~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~ 186 (520)
+||+. .+.+.+.... ..+..+-...++.-+++||+. |-.... ...........++++|+.+.++..+. ...
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~ 188 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD 188 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC
Confidence 88886 5555443110 111111112222235778884 321100 00001112357999999887776654 111
Q ss_pred CCCCCcceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCC
Q 010011 187 PPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ 264 (520)
Q Consensus 187 ~p~~r~~h~~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~ 264 (520)
.| ..++.. + ..||+....... ...+.+++||+..............+...-..-++..+++||+..+
T Consensus 189 ~p-----~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~----- 257 (305)
T 3dr2_A 189 HP-----NGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG----- 257 (305)
T ss_dssp SE-----EEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-----
T ss_pred CC-----cceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC-----
Confidence 11 223322 3 457776432110 0125688998875542211110001111111112223456776542
Q ss_pred CccCcEEEEecCCCcEEEee
Q 010011 265 NLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 265 ~~~~dv~~yd~~~~~W~~l~ 284 (520)
+.|++||++......+.
T Consensus 258 ---~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 258 ---TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp ---SEEEEECTTSCEEEEEE
T ss_pred ---CcEEEECCCCCEEEEEE
Confidence 24999999776655554
No 198
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=86.39 E-value=27 Score=37.63 Aligned_cols=168 Identities=12% Similarity=0.063 Sum_probs=92.8
Q ss_pred EEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEE
Q 010011 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~ 113 (520)
.....+++++|++....+. ..+++|++|..+. .|..+.. +...........+++||+....+. ....++
T Consensus 238 ~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~--~~~~l~ 308 (693)
T 3iuj_A 238 GATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDA--PNRRLV 308 (693)
T ss_dssp EEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTC--TTCEEE
T ss_pred EEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCC--CCCEEE
Confidence 3344566776666543222 2368999998765 7887642 111122224456889999876532 345799
Q ss_pred EEECCCC---eEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCC
Q 010011 114 ILDTSSH---TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (520)
Q Consensus 114 ~yd~~t~---~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~ 190 (520)
.+|+.+. .|+.+... .... . +....++.|++..-. .-...++++|+.....+.+. .|..
T Consensus 309 ~~d~~~~~~~~~~~l~~~--~~~~--~-~~s~~g~~lv~~~~~---------~g~~~l~~~d~~g~~~~~l~----~p~~ 370 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPE--RQQV--L-TVHSGSGYLFAEYMV---------DATARVEQFDYEGKRVREVA----LPGL 370 (693)
T ss_dssp EEETTSCCGGGCEEEECC--CSSC--E-EEEEETTEEEEEEEE---------TTEEEEEEECTTSCEEEEEC----CSSS
T ss_pred EEeCCCCCccccEEEecC--CCCE--E-EEEEECCEEEEEEEE---------CCeeEEEEEECCCCeeEEee----cCCC
Confidence 9998864 37765421 1111 1 444556666554321 11457889998877666664 2221
Q ss_pred CcceeEEe-eC-CEEEEE-ecCCCCCcccCceEEEECCCCcEEEeeC
Q 010011 191 RDSHTCSS-WK-NKIIVI-GGEDGHDYYLSDVHILDTDTLTWKELNT 234 (520)
Q Consensus 191 r~~h~~~~-~~-~~lyv~-GG~~~~~~~~~~i~~yd~~t~~W~~~~~ 234 (520)
........ .+ +.+++. .+.. ....++.||+.+.+++.+..
T Consensus 371 ~~~~~~~~~~d~~~l~~~~ss~~----tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 371 GSVSGFNGKHDDPALYFGFENYA----QPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp SEEEECCCCTTCSCEEEEEECSS----SCCEEEEECTTTCCEEEEEC
T ss_pred ceEEeeecCCCCCEEEEEecCCC----CCCEEEEEECCCCeEEEEEe
Confidence 11111111 12 334333 2222 23569999999998888775
No 199
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=86.30 E-value=16 Score=38.85 Aligned_cols=170 Identities=13% Similarity=0.008 Sum_probs=91.9
Q ss_pred EEcCCCEEEEEcCcCCCCC--CcCeEEEEECC-CC---eEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCc
Q 010011 39 AIKGGRFLYVFGGYGKDNC--QTNQVHVFDTV-NQ---TWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 39 ~v~~g~~Iyi~GG~~~~~~--~~~~~~~yd~~-t~---~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~ 111 (520)
..++|++|++.. ...... ....++++|.. ++ ....+... . .......+. -++++|+.+..++ ...
T Consensus 195 ~SpDG~~la~~~-~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-~---~~~~~~~~~spdg~l~~~~~~~~---~~~ 266 (662)
T 3azo_A 195 LSPDGRQAVWLA-WDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-P---EEAIAQAEWAPDGSLIVATDRTG---WWN 266 (662)
T ss_dssp ECTTSSEEEEEE-ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE-T---TBCEEEEEECTTSCEEEEECTTS---SCE
T ss_pred ECCCCCEEEEEE-CCCCCCCCCCcEEEEEEECCCCcccccEEeCCC-C---CceEcceEECCCCeEEEEECCCC---CeE
Confidence 446677665544 222111 12579999998 56 44444311 0 011122222 2566777765543 347
Q ss_pred EEEEECCCCeEEeecccC-CCCCCCC---CceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCC
Q 010011 112 LHILDTSSHTWISPSVRG-EGPEARE---GHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (520)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g-~~p~~r~---~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~ 186 (520)
+|++|+.+.+++.+.... ..-.+.+ ....+.. ++++++.+.. -...+|.+|+.+...+.+...
T Consensus 267 l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~d~~~~~~~~l~~~-- 334 (662)
T 3azo_A 267 LHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK----------GAAVLGILDPESGELVDAAGP-- 334 (662)
T ss_dssp EEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS----------SSCEEEEEETTTTEEEECCSS--
T ss_pred EEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc----------CccEEEEEECCCCcEEEecCC--
Confidence 999999888887654211 1111111 1223333 5677666541 145688889988887777521
Q ss_pred CCCCCcceeE-EeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeC
Q 010011 187 PPSARDSHTC-SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (520)
Q Consensus 187 ~p~~r~~h~~-~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~ 234 (520)
. .....+ ...++.+++..+... ....++.+|+.+.+.+.+..
T Consensus 335 --~-~~~~~~~s~~~~~~~~~~~~~~---~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 335 --W-TEWAATLTVSGTRAVGVAASPR---TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp --C-CEEEEEEEEETTEEEEEEEETT---EEEEEEEEETTTCCEEEEES
T ss_pred --C-CeEEEEEecCCCEEEEEEcCCC---CCCEEEEEECCCCceEEeec
Confidence 1 111223 334666665544321 23568999999988888754
No 200
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=86.19 E-value=10 Score=36.31 Aligned_cols=193 Identities=11% Similarity=0.074 Sum_probs=93.6
Q ss_pred cCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECC-EEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
...+|++|..+++-..+. ........-++ +|+... ..+......+|++|+.+.+...+... +. .
T Consensus 42 ~~~l~~~d~~~~~~~~l~--------~~~~~~~SpDg~~la~~~-~~~~~~~~~l~~~~~~~g~~~~l~~~---~~---~ 106 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIE--------NATMPRISPDGKKIAFMR-ANEEKKVSEIWVADLETLSSKKILEA---KN---I 106 (347)
T ss_dssp EEEEEEEETTTCCEEEEE--------SCEEEEECTTSSEEEEEE-EETTTTEEEEEEEETTTTEEEEEEEE---SE---E
T ss_pred cceEEEEeCCCCceEEcc--------cCCCeEECCCCCEEEEEE-eccCCCcceEEEEECCCCceEEEEcC---CC---c
Confidence 467999999988766541 11111111134 344332 22111234699999998887665421 11 1
Q ss_pred ceEEEE-CCEEEEEeCCCCCCCC------------CCc----ceeceeEEEEcCcceE-EEcccCCCCCCCCcceeEEee
Q 010011 138 HSAALV-GKRLFIFGGCGKSSNT------------NDE----VYYNDLYILNTETFVW-KRATTSGNPPSARDSHTCSSW 199 (520)
Q Consensus 138 hs~~~~-~~~lyv~GG~~~~~~~------------~~~----~~~~~v~~~d~~t~~W-~~v~~~~~~p~~r~~h~~~~~ 199 (520)
...... +++.+++......... .+. .....++++|+.+.+. +.+.. + .....+..
T Consensus 107 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~s 179 (347)
T 2gop_A 107 RSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P---RFSSGIWH 179 (347)
T ss_dssp EEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E---TTCEEEEE
T ss_pred cceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C---CcccccCC
Confidence 122222 4443333331100000 000 1146799999998887 66652 1 12223333
Q ss_pred CCEEEEEecCCCCCc--c-cCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCC--CCccCcEEEEe
Q 010011 200 KNKIIVIGGEDGHDY--Y-LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS--QNLYDDLYMID 274 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~--~-~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~--~~~~~dv~~yd 274 (520)
.+.+++.+....... . ..+++.+| +.+++.+.. . .......-+++.+++.+.... ......||++|
T Consensus 180 pdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 180 RDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE---K----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp TTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE---E----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred CCeEEEEEecccccccccccccEEEeC--CCceEEecc---C----cceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence 333555554332211 2 45788888 777777654 1 112222445554444443221 11245799999
Q ss_pred cCCCcEEEee
Q 010011 275 VDSGLWTKVI 284 (520)
Q Consensus 275 ~~~~~W~~l~ 284 (520)
++.+..+.
T Consensus 251 --~~~~~~l~ 258 (347)
T 2gop_A 251 --GKEVMGIL 258 (347)
T ss_dssp --SSCEEESS
T ss_pred --CCceEecc
Confidence 66666553
No 201
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=85.81 E-value=26 Score=33.77 Aligned_cols=192 Identities=11% Similarity=0.122 Sum_probs=96.8
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
+.+|+.|.. ..+++-+-.-.+|..+......|. ..+.++. -++.+|+.|.. ..+++-+-.-.+|
T Consensus 90 ~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~------g~v~~S~DgG~tW 154 (327)
T 2xbg_A 90 NEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNV------GAIYRTKDSGKNW 154 (327)
T ss_dssp TEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETT------CCEEEESSTTSSE
T ss_pred CeEEEEECC-------CeEEEECCCCCCceECccccCCCC--CeEEEEEECCCCEEEEeCC------ccEEEEcCCCCCC
Confidence 467776421 234443333568998753212221 2233333 36788888742 1355443345689
Q ss_pred EeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcC-cceEEEcccCCCCCCCCcceeEEee-
Q 010011 123 ISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNPPSARDSHTCSSW- 199 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~-t~~W~~v~~~~~~p~~r~~h~~~~~- 199 (520)
+.+.. +.+...++++.. ++.+|++|-. ..+++-+-. -.+|+.+.. +.....+.++..
T Consensus 155 ~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~ 214 (327)
T 2xbg_A 155 QALVQ----EAIGVMRNLNRSPSGEYVAVSSR------------GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTP 214 (327)
T ss_dssp EEEEC----SCCCCEEEEEECTTSCEEEEETT------------SSEEEEECTTCSSCEEEEC----CSSSCEEEEEECT
T ss_pred EEeec----CCCcceEEEEEcCCCcEEEEECC------------CcEEEEeCCCCCceeECCC----CCCCccceeEECC
Confidence 98762 222233444433 4566666531 224444333 578998852 233444444443
Q ss_pred CCEEEEEecCCCCCcccCceEEEECC-CCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCC
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
++.+|+.+.. ..+++.+.. ..+|+.+.... ++.....+.++.. ++.+|+.|+.. .+++-.-..
T Consensus 215 ~g~~~~~~~~-------G~~~~s~~D~G~tW~~~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~g-------~i~~S~DgG 279 (327)
T 2xbg_A 215 DGRLWMIVNG-------GKIAFSDPDNSENWGELLSPL-RRNSVGFLDLAYRTPNEVWLAGGAG-------ALLCSQDGG 279 (327)
T ss_dssp TSCEEEEETT-------TEEEEEETTEEEEECCCBCTT-SSCCSCEEEEEESSSSCEEEEESTT-------CEEEESSTT
T ss_pred CCCEEEEeCC-------ceEEEecCCCCCeeEeccCCc-ccCCcceEEEEecCCCEEEEEeCCC-------eEEEeCCCC
Confidence 5678876632 124444333 56798875410 1121222333333 46788887631 254443345
Q ss_pred CcEEEeee
Q 010011 278 GLWTKVIT 285 (520)
Q Consensus 278 ~~W~~l~~ 285 (520)
.+|+.+..
T Consensus 280 ~tW~~~~~ 287 (327)
T 2xbg_A 280 QTWQQDVD 287 (327)
T ss_dssp SSCEECGG
T ss_pred cccEEcCc
Confidence 68998764
No 202
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=84.77 E-value=18 Score=37.84 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=53.9
Q ss_pred EEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE
Q 010011 169 YILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (520)
Q Consensus 169 ~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~ 248 (520)
.+||+.+.+.+.+... +. .......+++.+++++.+..+ ...++.+|+.+.+++.+... ......-+.
T Consensus 135 ~l~d~~~g~~~~l~~~---~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~----~~~~~~~~~ 202 (582)
T 3o4h_A 135 ALYALDGGGLRELARL---PG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSG----EGSFSSASI 202 (582)
T ss_dssp EEEEEETTEEEEEEEE---SS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCS----SCEEEEEEE
T ss_pred eEEEccCCcEEEeecC---CC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecC----CCccccceE
Confidence 3678888877776522 11 222233466666655543322 23599999999988877431 111112222
Q ss_pred EECCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 249 AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 249 ~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
.-+++.++.+.... ...|+++|++++...
T Consensus 203 SpDG~~l~~~~~~~----~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 203 SPGMKVTAGLETAR----EARLVTVDPRDGSVE 231 (582)
T ss_dssp CTTSCEEEEEECSS----CEEEEEECTTTCCEE
T ss_pred CCCCCEEEEccCCC----eeEEEEEcCCCCcEE
Confidence 23455444332211 246999999999877
No 203
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=84.67 E-value=45 Score=35.52 Aligned_cols=109 Identities=10% Similarity=-0.087 Sum_probs=53.0
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCC----CCCCcEEEEECCCCeEEeecccCCCCCCCC
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM----NPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 136 (520)
.++++|..+++-..+.............-...-+++.++++..+.. .....++++|+.+.+-+.+.... ....+.
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~ 116 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKL 116 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccc
Confidence 6889999887655543111110001111112225554555443222 23478999999988765444211 111111
Q ss_pred CceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc
Q 010011 137 GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (520)
Q Consensus 137 ~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~ 182 (520)
...+..-+++.++++.. ..++++|+.+.+...+.
T Consensus 117 ~~~~~SPdG~~la~~~~------------~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIFE------------NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SBCCBCSSTTCEEEEET------------TEEEEESSSSSCCEEEE
T ss_pred cccEECCCCCEEEEEEC------------CeEEEEECCCCceEEEe
Confidence 12222334554455441 36888888776655554
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=84.57 E-value=33 Score=33.88 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=43.1
Q ss_pred EEEEEcCCCEEEEEcCcCC---CCCCcCeEEEEECCCCeEE-eeeccCCC-----CCCCCcceEEEECCEEEEEcCCCCC
Q 010011 36 TCNAIKGGRFLYVFGGYGK---DNCQTNQVHVFDTVNQTWS-QPVIKGSP-----PTPRDSHSCTTVGENLYVFGGTDGM 106 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~---~~~~~~~~~~yd~~t~~W~-~l~~~g~~-----P~~R~~hs~~~~~~~iyv~GG~~~~ 106 (520)
..+..++++.+|+..-... .....+.+.+||+.+.+-. .+++.+.. ..|+ .......+..||+..-.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~~l~v~n~~--- 145 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQFA--- 145 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCCEEEEEecC---
Confidence 4455567888998753211 1112466889999875432 33221000 1122 22222235668876311
Q ss_pred CCCCcEEEEECCCCeEE
Q 010011 107 NPLRDLHILDTSSHTWI 123 (520)
Q Consensus 107 ~~~~~~~~yd~~t~~W~ 123 (520)
..+.+.++| .+++-.
T Consensus 146 -~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 146 -AGPAVGLVV-QGGSSD 160 (373)
T ss_pred -CCCeEEEEE-CCCCEE
Confidence 235799999 887653
No 205
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=84.33 E-value=23 Score=31.81 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=78.9
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCC--CeEEeeecc---CCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVN--QTWSQPVIK---GSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t--~~W~~l~~~---g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~y 115 (520)
++.+|+|=| +.+|+++... .......+. ..+|.. --++... ++++|+|-| +..|+|
T Consensus 16 ~g~~yfFkg--------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-------~~yw~~ 78 (195)
T 1itv_A 16 GNQLYLFKD--------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------RQVWVY 78 (195)
T ss_dssp TTEEEEEET--------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET-------TEEEEE
T ss_pred CCEEEEEEC--------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC-------CEEEEE
Confidence 457899865 4578887655 233322221 234432 1222232 678999987 468889
Q ss_pred ECCCCeE-EeecccCCCCCC--CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE-----Ecc-cCCC
Q 010011 116 DTSSHTW-ISPSVRGEGPEA--REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-----RAT-TSGN 186 (520)
Q Consensus 116 d~~t~~W-~~~~~~g~~p~~--r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~-----~v~-~~~~ 186 (520)
+..+..- +.+..-| +|.. .-..+....++++|+|-| +..|+||..+.+-. .+. .-..
T Consensus 79 ~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg-------------~~ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 79 TGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG-------------RRLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp ETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET-------------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred cCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeC-------------CEEEEEeCCcccccCCCccChhhcCCC
Confidence 8653221 1121111 3332 222233323578999988 45789998765322 111 1111
Q ss_pred CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEE
Q 010011 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (520)
Q Consensus 187 ~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~ 230 (520)
.|. .-.++...++.+|+|-| +..|+||..+..-.
T Consensus 145 vp~--~idaa~~~~g~~Yffkg--------~~y~~~~~~~~~v~ 178 (195)
T 1itv_A 145 VPL--DTHDVFQFREKAYFCQD--------RFYWRVSSRSELNQ 178 (195)
T ss_dssp SCS--SCSEEEEETTEEEEEET--------TEEEEEECCTTCCE
T ss_pred CCC--CCCEEEEeCCeEEEEeC--------CEEEEEECCccEEe
Confidence 222 23345556799999976 35788888766533
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=84.23 E-value=25 Score=32.27 Aligned_cols=195 Identities=8% Similarity=-0.034 Sum_probs=99.2
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
+++..++.||+.... ...+++||+. +++....... ....-++++.. ++++|+.... ...+++||
T Consensus 67 i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~ 131 (300)
T 2qc5_A 67 LIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----GDRIGKLT 131 (300)
T ss_dssp EEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----TTEEEEEC
T ss_pred EEECCCCCEEEEecC------CCeEEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----CCeEEEEC
Confidence 334333457775421 2458899988 7766543211 11222333333 5678887532 24688999
Q ss_pred CCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCccee
Q 010011 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (520)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~ 195 (520)
+. .+........ ....-+.++.. ++++|+.... ...+++||+ +.++..+...... ..-..
T Consensus 132 ~~-g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~---~~~~~ 192 (300)
T 2qc5_A 132 AD-GTIYEYDLPN---KGSYPAFITLGSDNALWFTENQ-----------NNSIGRITN-TGKLEEYPLPTNA---AAPVG 192 (300)
T ss_dssp TT-SCEEEEECSS---TTCCEEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSSTT---CCEEE
T ss_pred CC-CCEEEccCCC---CCCCceeEEECCCCCEEEEecC-----------CCeEEEECC-CCcEEEeeCCCCC---CCcce
Confidence 87 6655433111 11122233332 4678886531 245888988 5565554321111 11223
Q ss_pred EEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEE
Q 010011 196 CSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMI 273 (520)
Q Consensus 196 ~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~y 273 (520)
++.. ++.||+.... .+.+.+||+ +.++....... ....-.+++.. +++||+.... .+.|.+|
T Consensus 193 i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~ 256 (300)
T 2qc5_A 193 ITSGNDGALWFVEIM------GNKIGRITT-TGEISEYDIPT---PNARPHAITAGKNSEIWFTEWG------ANQIGRI 256 (300)
T ss_dssp EEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECSTTCEEEEETT------TTEEEEE
T ss_pred EEECCCCCEEEEccC------CCEEEEEcC-CCcEEEEECCC---CCCCceEEEECCCCCEEEeccC------CCeEEEE
Confidence 3332 5678876432 235889998 66666654311 11111223322 4567776532 2458999
Q ss_pred ecCCCcEEEe
Q 010011 274 DVDSGLWTKV 283 (520)
Q Consensus 274 d~~~~~W~~l 283 (520)
|+ +......
T Consensus 257 ~~-~g~~~~~ 265 (300)
T 2qc5_A 257 TN-DNTIQEY 265 (300)
T ss_dssp CT-TSCEEEE
T ss_pred CC-CCcEEEE
Confidence 98 4566544
No 207
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=84.09 E-value=28 Score=32.60 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=17.4
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEee
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISP 125 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 125 (520)
+.+++.|+.+ ..+.++|+.+..|..+
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~ 92 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQI 92 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCC
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEE
Confidence 4677777654 3477888887766543
No 208
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=83.89 E-value=17 Score=39.08 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
++++++.|+.+ ..+.++|+.+..-...- .+. ...-.+++.. ++..++.|+.+ ..+.++|
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~-~~h---~~~v~~~~~s~~~~~l~s~s~D-----------~~i~iwd 500 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRF-VGH---TKDVLSVAFSLDNRQIVSASRD-----------RTIKLWN 500 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEE-ECC---SSCEEEEEECTTSSCEEEEETT-----------SCEEEEC
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEE-eCC---CCCEEEEEEeCCCCEEEEEeCC-----------CEEEEEE
Confidence 55677777654 35888998877543211 110 0011122222 45566666632 3456667
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEee--CC--EEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSSW--KN--KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~~--~~--~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~ 248 (520)
.....-..+.... ...+..-.++.+ ++ .+++.|+.++ .+.+||+.+.+-...-. .........+.
T Consensus 501 ~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~---~h~~~v~~v~~ 569 (694)
T 3dm0_A 501 TLGECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTLA---GHTGYVSTVAV 569 (694)
T ss_dssp TTSCEEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEEC---CCSSCEEEEEE
T ss_pred CCCCcceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEEc---CCCCCEEEEEE
Confidence 6544322222111 111111223333 22 4666676543 47888988765443221 11111111122
Q ss_pred EECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 249 AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 249 ~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.-++++++.|+.+. .|.+||+.+..
T Consensus 570 spdg~~l~sg~~Dg------~i~iwd~~~~~ 594 (694)
T 3dm0_A 570 SPDGSLCASGGKDG------VVLLWDLAEGK 594 (694)
T ss_dssp CTTSSEEEEEETTS------BCEEEETTTTE
T ss_pred eCCCCEEEEEeCCC------eEEEEECCCCc
Confidence 22566777777643 38899988875
No 209
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=83.68 E-value=31 Score=32.91 Aligned_cols=236 Identities=13% Similarity=0.058 Sum_probs=119.0
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeecc---cCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSV---RGEGPE 133 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~---~g~~p~ 133 (520)
+.++++|+.+++.......+... .-++++.. +++||+.... ...+.+||+.... -..+.. .+....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~---~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~ 140 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFY---LPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQN 140 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCS---SEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred CcEEEEECCCCeEEeccCCCccC---CceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence 36899999887765432111111 12233333 5678887643 2468899986541 112211 111111
Q ss_pred CCCC-ceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCC----CCC-CcceeEEee-C-CEE
Q 010011 134 AREG-HSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP----PSA-RDSHTCSSW-K-NKI 203 (520)
Q Consensus 134 ~r~~-hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~----p~~-r~~h~~~~~-~-~~l 203 (520)
.... ..+++. ++.|||..++. .+.+.+||........+...+.. +.. ..-+.+++- + +.|
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL 210 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE
Confidence 1112 233443 57899987521 35688888665544444322111 111 112334443 4 799
Q ss_pred EEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCC-CCccCcEEEEecCCCcEEE
Q 010011 204 IVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS-QNLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 204 yv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~-~~~~~dv~~yd~~~~~W~~ 282 (520)
||.... .+.+.+||+++.+....-.. ......-...+...+.+|+..|...- ......+.++|+.+.....
T Consensus 211 ~v~d~~------~~~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 211 CVADRE------NGRIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp EEEETT------TTEEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred EEEECC------CCEEEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence 998653 24589999986666544321 11112222344445777777764321 1223569999988887655
Q ss_pred eeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCCCCccCceEeeecc
Q 010011 283 VITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (520)
Q Consensus 283 l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (520)
.-... +.......+.++ ..++.|||....+. .+++++..
T Consensus 283 ~~~~~--~~~~~~p~~ia~--~~dG~lyvad~~~~------~I~~~~~~ 321 (329)
T 3fvz_A 283 VFKPV--RKHFDMPHDIVA--SEDGTVYIGDAHTN------TVWKFTLT 321 (329)
T ss_dssp EECCS--SSCCSSEEEEEE--CTTSEEEEEESSSC------CEEEEEEE
T ss_pred EEcCC--CCccCCeeEEEE--CCCCCEEEEECCCC------EEEEEeCC
Confidence 43211 111111122333 34668888764333 46666644
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.54 E-value=38 Score=33.82 Aligned_cols=210 Identities=12% Similarity=0.016 Sum_probs=106.8
Q ss_pred EEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEE
Q 010011 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~y 115 (520)
..+++..++.||+.... .+.+.++|+.++.-..+...+.. ++ .+....++.||+...... ..++++
T Consensus 134 ~~la~d~~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~~~--~~--ia~~~~g~~l~~~d~~~~----~~I~~~ 199 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRD------DPRVRLISVDDNKVTTVHPGFKG--GK--PAVTKDKQRVYSIGWEGT----HTVYVY 199 (409)
T ss_dssp EEEEECSTTEEEEEETT------TTEEEEEETTTTEEEEEEETCCB--CB--CEECTTSSEEEEEBSSTT----CEEEEE
T ss_pred eEEEEeCCCCEEEEecC------CCcEEEEECCCCEEEEeeccCCC--Cc--eeEecCCCcEEEEecCCC----ceEEEE
Confidence 34455445568887642 25689999998877765422211 11 111122456777653211 178999
Q ss_pred ECCCCe-EEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCc
Q 010011 116 DTSSHT-WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (520)
Q Consensus 116 d~~t~~-W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~ 192 (520)
|..+.. ...+.... ......-+.+++. ++.||+... ...+++||+.+.....+...+.......
T Consensus 200 d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 200 MKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS------------NKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp EGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT------------TCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred EcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC------------CCcEEEEECCCCCEEEEecccccCCCCC
Confidence 987543 22221100 1011222334443 578888422 2368999998776555421111111111
Q ss_pred c-e-eEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCC-CCC-------CCCc--eeEEEEE-CCEEEEE
Q 010011 193 S-H-TCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG-MVL-------SPRA--GHSTVAF-GKNLFVF 257 (520)
Q Consensus 193 ~-h-~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~-~~p-------~~R~--~hs~~~~-~~~iyv~ 257 (520)
. . .++.. ++.||+.... .+.|++||+... ...+...+ ... ..+. -..++.. ++.||+.
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~------~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQN------LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETT------TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred CccccEEEeCCCCEEEEEeCC------CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 1 1 33333 5889987532 346899988765 33332211 000 0011 1122322 4568887
Q ss_pred ec-ccCCCCccCcEEEEecCCCcEEEeee
Q 010011 258 GG-FTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 258 GG-~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
.. . .+.|.++|+.++....+..
T Consensus 340 d~~~------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 340 DGFK------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTT------TCEEEEEETTTTEEEEEEE
T ss_pred eCCC------CCEEEEEECCCCEEEEEeC
Confidence 54 3 2458999977777666543
No 211
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=83.04 E-value=28 Score=31.84 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=78.7
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe-EE--eecccC-CCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCc
Q 010011 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT-WI--SPSVRG-EGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDE 162 (520)
Q Consensus 88 hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~--~~~~~g-~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~ 162 (520)
-+++.+.+++|+|=|. .+|+++..... .. .+.... .+|. ....+... .++++|+|-|
T Consensus 34 DAi~~~~g~~~fFkg~-------~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG---------- 95 (218)
T 1gen_A 34 DGIAQIRGEIFFFKDR-------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG---------- 95 (218)
T ss_dssp SEEEEETTEEEEEETT-------EEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET----------
T ss_pred eEEEeCCCcEEEEECC-------EEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC----------
Confidence 3455678999999773 46666654321 21 111111 2232 22222222 2578999988
Q ss_pred ceeceeEEEEcCcce---EEEcccCCCCCCCCcceeEEe--eCCEEEEEecCCCCCcccCceEEEECCCCcEEE-----e
Q 010011 163 VYYNDLYILNTETFV---WKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----L 232 (520)
Q Consensus 163 ~~~~~v~~~d~~t~~---W~~v~~~~~~p~~r~~h~~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----~ 232 (520)
+..|+|+..+.. =+.+...+-+.....--++.. .++++|+|-| +..|+||..+++-.. +
T Consensus 96 ---~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG--------~~ywr~d~~~~~v~~gyPr~i 164 (218)
T 1gen_A 96 ---NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPKLI 164 (218)
T ss_dssp ---TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCEEH
T ss_pred ---CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC--------CEEEEEECccccccCCCCcch
Confidence 457888753110 112222122211112223333 3689999966 458899987764221 1
Q ss_pred eCCCCCCCCCceeEEEEEC--CEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 233 NTSGMVLSPRAGHSTVAFG--KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 233 ~~~~~~p~~R~~hs~~~~~--~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.. .-+..+..-.++.... +++|+|-|. ..|+||..+..
T Consensus 165 ~~-~w~g~p~~idaAf~~~~~g~~YfFkg~--------~y~~~~~~~~~ 204 (218)
T 1gen_A 165 AD-AWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 204 (218)
T ss_dssp HH-HSSSCCSSCSEEEECTTTCEEEEEETT--------EEEEEETTEEE
T ss_pred hh-ccCCCCCCCCEEEEEcCCCcEEEEECC--------EEEEEECCcee
Confidence 10 0011122233455544 789999874 37888876543
No 212
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=83.02 E-value=45 Score=34.29 Aligned_cols=143 Identities=12% Similarity=0.078 Sum_probs=73.7
Q ss_pred CEEEEEcCC-CCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 95 ENLYVFGGT-DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 95 ~~iyv~GG~-~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
++.++.|+. + ..+.+||..+..... . ...........+.. ++++++.|+. ...+.+|
T Consensus 456 ~~~l~~~~~~d-----~~i~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~g~~l~~~~~-----------dg~i~iw 515 (615)
T 1pgu_A 456 QNYVAVGLEEG-----NTIQVFKLSDLEVSF-D---LKTPLRAKPSYISISPSETYIAAGDV-----------MGKILLY 515 (615)
T ss_dssp SSEEEEEETTT-----SCEEEEETTEEEEEE-E---CSSCCSSCEEEEEECTTSSEEEEEET-----------TSCEEEE
T ss_pred CCEEEEeecCC-----CeEEEEECCCccccc-c---ccCCccCceEEEEECCCCCEEEEcCC-----------CCeEEEe
Confidence 555566654 3 358899998876542 1 11111122222333 5677777773 2457888
Q ss_pred EcCcceEEEcccCCCCCCCCcceeEE-ee----------CCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCC
Q 010011 172 NTETFVWKRATTSGNPPSARDSHTCS-SW----------KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMV 238 (520)
Q Consensus 172 d~~t~~W~~v~~~~~~p~~r~~h~~~-~~----------~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~ 238 (520)
|+.+.+-...-. ......-.+++ .. ++.+++.|+.++ .+..||..+.. ...+..
T Consensus 516 ~~~~~~~~~~~~---~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~---- 582 (615)
T 1pgu_A 516 DLQSREVKTSRW---AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT------NIFIYSVKRPMKIIKALNA---- 582 (615)
T ss_dssp ETTTTEEEECCS---CCCSSCEEEEEECCCC------CCSCCEEEEEETTS------CEEEEESSCTTCCEEETTS----
T ss_pred eCCCCcceeEee---cCCCCceeEEEEcCccccccccccCCCEEEEEcCCC------cEEEEECCCCceechhhhc----
Confidence 987765433211 00111111222 22 577888887653 48889988752 222211
Q ss_pred CCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCC
Q 010011 239 LSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 239 p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
........+..-+++ ++.||.+. .+.+||+++
T Consensus 583 h~~~v~~l~~s~~~~-l~s~~~d~------~v~iw~~~~ 614 (615)
T 1pgu_A 583 HKDGVNNLLWETPST-LVSSGADA------CIKRWNVVL 614 (615)
T ss_dssp STTCEEEEEEEETTE-EEEEETTS------CEEEEEEC-
T ss_pred CccceEEEEEcCCCC-eEEecCCc------eEEEEeeec
Confidence 112222234445777 77777543 377777654
No 213
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=82.41 E-value=37 Score=34.75 Aligned_cols=155 Identities=12% Similarity=0.035 Sum_probs=80.9
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccC---CCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcc
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRG---EGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEV 163 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g---~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~ 163 (520)
+++.+.+.+|+|=|. ..|+++.....+....+.. .+|.. .. ++... ++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg----------- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKDR-------FYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG----------- 326 (450)
T ss_dssp EEEEETTEEEEEETT-------EEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET-----------
T ss_pred eEEecCCeEEEEeCC-------EEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC-----------
Confidence 456678999999873 4566655443332222111 13321 12 23332 689999988
Q ss_pred eeceeEEEEcCcc---eEEEcc-cCCCCCC--CCcceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEE-----E
Q 010011 164 YYNDLYILNTETF---VWKRAT-TSGNPPS--ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-----E 231 (520)
Q Consensus 164 ~~~~v~~~d~~t~---~W~~v~-~~~~~p~--~r~~h~~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~-----~ 231 (520)
+.+|+|+..+. -=+.+. ..+ .|. .....+.... ++++|+|=| +..|+||..+.+-. .
T Consensus 327 --~~~W~~~~~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG--------~~yw~yd~~~~~~~~gYPk~ 395 (450)
T 1su3_A 327 --NKYWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYPKM 395 (450)
T ss_dssp --TEEEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCSEE
T ss_pred --CEEEEecCCcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC--------CEEEEEeCCCccccCCCCcc
Confidence 34677764321 011121 111 121 1222222222 689999966 45899997654322 1
Q ss_pred eeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 232 LNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 232 ~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
+.. +-.-.+..--+++..++++|+|-|. ..|+||..+.+-..+
T Consensus 396 I~~-~fpgip~~iDAA~~~~g~~YFFkg~--------~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 396 IAH-DFPGIGHKVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRILTL 438 (450)
T ss_dssp HHH-HSTTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEEEE
T ss_pred hhh-cCCCCCCCccEEEEcCCeEEEEeCC--------EEEEEECCcceEecc
Confidence 110 0001122233455578999999874 389999888765443
No 214
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=81.18 E-value=35 Score=33.93 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCc----EEEeeCCCCCCCCCceeEEEEE---CCEEEEEecccCCCCccCcEEE
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLT----WKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYM 272 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~----W~~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~~~~~~dv~~ 272 (520)
++.+++.|+.+ ..+.+||+.+.. -..+.. ......++.+ +..+++.|+..+ .|.+
T Consensus 243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~i~~~p~~~~~l~tg~~dg------~v~v 304 (430)
T 2xyi_A 243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVDA------HTAEVNCLSFNPYSEFILATGSADK------TVAL 304 (430)
T ss_dssp CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEEC------CSSCEEEEEECSSCTTEEEEEETTS------EEEE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCCCCcceeEeec------CCCCeEEEEeCCCCCCEEEEEeCCC------eEEE
Confidence 45677777654 348889987642 111211 1111222222 234788887643 4889
Q ss_pred EecCC
Q 010011 273 IDVDS 277 (520)
Q Consensus 273 yd~~~ 277 (520)
||+.+
T Consensus 305 wd~~~ 309 (430)
T 2xyi_A 305 WDLRN 309 (430)
T ss_dssp EETTC
T ss_pred EeCCC
Confidence 99876
No 215
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=81.05 E-value=36 Score=31.77 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=35.9
Q ss_pred CEEEEEecCCCCCcccCceEEEECCC--CcEEEeeCCCCCCCCCceeEEE-EECCEEEEEecccCCCCccCcEEEEecC-
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVD- 276 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t--~~W~~~~~~~~~p~~R~~hs~~-~~~~~iyv~GG~~~~~~~~~dv~~yd~~- 276 (520)
+.+++.|+.++ .+.++|+.+ ..|....... ......-.++. ..++++++.||.+. .+.+|+..
T Consensus 219 ~~~las~s~D~------~v~iWd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~las~~~D~------~v~lw~~~~ 285 (297)
T 2pm7_B 219 RSYMASVSQDR------TCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDN------KVTLWKENL 285 (297)
T ss_dssp SEEEEEEETTS------CEEEEEESSTTSCCEEEESSS-SCCSSCEEEEEECSSSCCEEEEETTS------CEEEEEECT
T ss_pred ceEEEEEECCC------cEEEEEeCCCCCccceeeeec-ccCCCcEEEEEECCCCCEEEEEcCCC------cEEEEEECC
Confidence 37778887653 366667654 3455332210 01111112222 23566777777643 26667655
Q ss_pred CCcEEEeee
Q 010011 277 SGLWTKVIT 285 (520)
Q Consensus 277 ~~~W~~l~~ 285 (520)
.+.|..+..
T Consensus 286 ~g~w~~~~~ 294 (297)
T 2pm7_B 286 EGKWEPAGE 294 (297)
T ss_dssp TSCEEEC--
T ss_pred CCcEEeccc
Confidence 457887643
No 216
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=80.52 E-value=34 Score=34.42 Aligned_cols=184 Identities=17% Similarity=0.266 Sum_probs=98.7
Q ss_pred CCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEE-----cCcceEEEcccCCCCCCCCcc
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILN-----TETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d-----~~t~~W~~v~~~~~~p~~r~~ 193 (520)
.+.|++.+. +..|..-.-|+.+.+++.-|.+|=...+ -...-. .+..|. +....=+.++. .....-..
T Consensus 269 ~spW~~t~L-~~i~~vTe~HSFa~i~~~~fa~GyHnGD---v~PRe~-G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsE 341 (670)
T 3ju4_A 269 KSPWRKTDL-GLIPSVTEVHSFATIDNNGFAMGYHQGD---VAPREV-GLFYFPDAFNSPSNYVRRQIPS--EYEPDASE 341 (670)
T ss_dssp TSCCEEEEC-CSCTTCSEEEEEEECSSSCEEEEEEECS---SSSCEE-EEEEETTTTTCTTCCEEEECCG--GGCTTEEE
T ss_pred cCCceeccc-ccccceeeeeeeeEecCCceEEEeccCC---CCccee-eEEEecccccCCcceeeeechh--hhcccccc
Confidence 456776543 3466677789999998877777542111 111111 122221 12222233321 11222233
Q ss_pred eeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeE---EEEECCEEEEEecccCCCC-----
Q 010011 194 HTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS---TVAFGKNLFVFGGFTDSQN----- 265 (520)
Q Consensus 194 h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs---~~~~~~~iyv~GG~~~~~~----- 265 (520)
.++-++++.||+.--.......-..+++-+.....|+.+.- | ....|+ .+.++|.||+||-....++
T Consensus 342 PCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrf----p-~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~ 416 (670)
T 3ju4_A 342 PCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRF----P-HNVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 416 (670)
T ss_dssp EEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEEC----T-TCCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred chhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheec----c-ccccccCCCcceeCCEEEEEeccccccccccCC
Confidence 44556799999975332222345668888888889999975 2 222333 6788999999996432111
Q ss_pred -------ccCcEE--EE-----ecCCCcEEEeeeC---CCCCCCceeeeeeeeccccCCEE-EEEcccCC
Q 010011 266 -------LYDDLY--MI-----DVDSGLWTKVITT---GEGPSARFSVAGDCLDPLKGGVL-VFIGGCNK 317 (520)
Q Consensus 266 -------~~~dv~--~y-----d~~~~~W~~l~~~---~~~p~~r~~~~~~~~~~~~~~~l-~v~GG~~~ 317 (520)
.....+ +. ..+.-+|..+... +..-....+..++|+ .++.| |+|||.+.
T Consensus 417 pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~v---KD~~lyyiFGgEd~ 483 (670)
T 3ju4_A 417 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVV---KDNYIYYMFGGEDH 483 (670)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEE---ETTEEEEEEEEBCS
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEE---eCCEEEEEecCccc
Confidence 112222 22 2345577777653 333334445555554 46655 57899763
No 217
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=79.85 E-value=44 Score=32.10 Aligned_cols=155 Identities=12% Similarity=-0.021 Sum_probs=78.1
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~ 189 (520)
..+|++|+.+.+...+. ..+.......+...+++.++++.. ...++++|+.+.+-..+.. .+.
T Consensus 60 ~~l~~~d~~~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~-----------~~~l~~~d~~~g~~~~~~~---~~~ 122 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLT---EGRGDNTFGGFLSPDDDALFYVKD-----------GRNLMRVDLATLEENVVYQ---VPA 122 (388)
T ss_dssp CEEEEEETTTCEEEECC---CSSCBCSSSCEECTTSSEEEEEET-----------TTEEEEEETTTCCEEEEEE---CCT
T ss_pred ceEEEEeCCCCceEEee---eCCCCCccceEEcCCCCEEEEEeC-----------CCeEEEEECCCCcceeeee---chh
Confidence 47999999998877654 222211111223334444444331 1468899998877665542 222
Q ss_pred CCcceeEE--eeCCEEEEEecCCC----------------CCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-
Q 010011 190 ARDSHTCS--SWKNKIIVIGGEDG----------------HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (520)
Q Consensus 190 ~r~~h~~~--~~~~~lyv~GG~~~----------------~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~- 250 (520)
........ ..++++++.--... .......++.+|+++.+-..+.. ......+....-
T Consensus 123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ----ENQWLGHPIYRPY 198 (388)
T ss_dssp TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE----ESSCEEEEEEETT
T ss_pred hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec----CCccccccEECCC
Confidence 21111111 12333332110000 01123579999999887776653 112233333433
Q ss_pred CCEEEEEecccCCCCccCcEEEEecCCCcEEEeee
Q 010011 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
+++.+++............+|.+|+++.....+..
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (388)
T 3pe7_A 199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT 233 (388)
T ss_dssp EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC
T ss_pred CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee
Confidence 45544444332222234579999998877666643
No 218
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=78.37 E-value=42 Score=31.03 Aligned_cols=63 Identities=5% Similarity=-0.010 Sum_probs=33.2
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCce-eEEEEECC-----EEEEEecccCCCCccCcEEEEe
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG-HSTVAFGK-----NLFVFGGFTDSQNLYDDLYMID 274 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~-hs~~~~~~-----~iyv~GG~~~~~~~~~dv~~yd 274 (520)
+.+++.|+.++ .+..++........+.. ....... .++....+ ++++.|+.+. .+.+||
T Consensus 182 ~~~l~~~~~~~------~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg------~i~iwd 246 (351)
T 3f3f_A 182 PEKLAVSALEQ------AIIYQRGKDGKLHVAAK---LPGHKSLIRSISWAPSIGRWYQLIATGCKDG------RIRIFK 246 (351)
T ss_dssp CCEEEEEETTE------EEEEEECTTSCEEEEEE---CCCCCSCEEEEEECCCSSCSSEEEEEEETTS------CEEEEE
T ss_pred CcEEEEecCCC------cEEEEccCCCceeeeee---cCCCCcceeEEEECCCCCCcceEEEEEcCCC------eEEEEe
Confidence 66777777543 24455566666654443 2211111 22333333 6788887643 377777
Q ss_pred cCCC
Q 010011 275 VDSG 278 (520)
Q Consensus 275 ~~~~ 278 (520)
+.+.
T Consensus 247 ~~~~ 250 (351)
T 3f3f_A 247 ITEK 250 (351)
T ss_dssp EEEC
T ss_pred CCCC
Confidence 7653
No 219
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=78.10 E-value=52 Score=31.91 Aligned_cols=200 Identities=8% Similarity=0.042 Sum_probs=92.8
Q ss_pred EcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 40 v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
.++|+.+.+.+|.. ...+.++|+.+.+..... ... . .-.+++. -++++++.|+. +.+.+++..
T Consensus 142 SpDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~-~~~--~--~V~~v~fspdg~~l~s~s~------~~~~~~~~~ 205 (365)
T 4h5i_A 142 SREGTVAAIASSKV-----PAIMRIIDPSDLTEKFEI-ETR--G--EVKDLHFSTDGKVVAYITG------SSLEVISTV 205 (365)
T ss_dssp CTTSSCEEEEESCS-----SCEEEEEETTTTEEEEEE-ECS--S--CCCEEEECTTSSEEEEECS------SCEEEEETT
T ss_pred cCCCCEEEEEECCC-----CCEEEEeECCCCcEEEEe-CCC--C--ceEEEEEccCCceEEeccc------eeEEEEEec
Confidence 35566555555531 245888999887755422 111 1 1122222 25566666542 357778877
Q ss_pred CCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeE-E
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC-S 197 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~-~ 197 (520)
+......... ..........+...++..++.++.... ....++.+|.....+..............-.++ .
T Consensus 206 ~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~~s~d~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 206 TGSCIARKTD-FDKNWSLSKINFIADDTVLIAASLKKG-------KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp TCCEEEEECC-CCTTEEEEEEEEEETTEEEEEEEESSS-------CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred cCcceeeeec-CCCCCCEEEEEEcCCCCEEEEEecCCc-------ceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence 7665432211 001111111122346777777663211 112355566655444322110000000111112 2
Q ss_pred eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCC
Q 010011 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 198 ~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
..++++++.|+.++ .+.+||..+.+-...-.. .........+..-++++++-|+.+. .|.++|+..
T Consensus 278 Spdg~~lasgs~D~------~V~iwd~~~~~~~~~~~~--gH~~~V~~v~fSpdg~~laS~S~D~------tvrvw~ip~ 343 (365)
T 4h5i_A 278 DMKGELAVLASNDN------SIALVKLKDLSMSKIFKQ--AHSFAITEVTISPDSTYVASVSAAN------TIHIIKLPL 343 (365)
T ss_dssp CTTSCEEEEEETTS------CEEEEETTTTEEEEEETT--SSSSCEEEEEECTTSCEEEEEETTS------EEEEEECCT
T ss_pred CCCCCceEEEcCCC------EEEEEECCCCcEEEEecC--cccCCEEEEEECCCCCEEEEEeCCC------eEEEEEcCC
Confidence 23788888888653 488899987653321110 0111111112222567777777542 377888754
No 220
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.81 E-value=42 Score=31.96 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=39.0
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
++.+++.|+.++ .+..||+.+.+-..+.. ......-.++... ++.+++.|+.+. .|.+||+.+.
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~dg------~i~iwd~~~~ 202 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPDG------ILDVYNLSSP 202 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTTS------CEEEEESSCT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCC
Confidence 456777777553 48889998877644432 1111112223333 466777777543 4899999887
Q ss_pred cE
Q 010011 279 LW 280 (520)
Q Consensus 279 ~W 280 (520)
.-
T Consensus 203 ~~ 204 (343)
T 3lrv_A 203 DQ 204 (343)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 221
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.75 E-value=56 Score=32.10 Aligned_cols=212 Identities=14% Similarity=0.144 Sum_probs=105.9
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCC--C----C-cc--eEEEE----CCEEEEEcCCCCCCCC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP--R----D-SH--SCTTV----GENLYVFGGTDGMNPL 109 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~--R----~-~h--s~~~~----~~~iyv~GG~~~~~~~ 109 (520)
.+.||+.+..+. .-..+++.+....+|..+......+.. + . .+ +++.. .+.||+.+- .
T Consensus 67 ~~~l~~g~~~g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ 137 (394)
T 3b7f_A 67 PERMLMAARTGH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------P 137 (394)
T ss_dssp TTCEEEEEEC-----CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------T
T ss_pred CCeEEEEecCCC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------C
Confidence 455777543211 112577777777899987532111211 1 1 11 22332 466777542 1
Q ss_pred CcEEEEECCCCeEEeecccCCCCC--------------CCCCceEEEE---CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPE--------------AREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~--------------~r~~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
..+++.+-...+|+.+......|. ....++++.. .+.||+... ...+++.+
T Consensus 138 ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~------------~ggl~~s~ 205 (394)
T 3b7f_A 138 QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS------------SGGVFEST 205 (394)
T ss_dssp TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE------------TBEEEEES
T ss_pred CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC------------CCCEEEEC
Confidence 357888777889998752111121 1112333333 246777543 13477877
Q ss_pred cCcceEEEcccCC---CCCCC-----CcceeEEee-C--CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCC
Q 010011 173 TETFVWKRATTSG---NPPSA-----RDSHTCSSW-K--NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP 241 (520)
Q Consensus 173 ~~t~~W~~v~~~~---~~p~~-----r~~h~~~~~-~--~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~ 241 (520)
-...+|+.+.... .+|.+ ...+.++.. . +.||+-.+ ..+++.+-...+|+.+.. .++..
T Consensus 206 DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------~gl~~s~D~G~tW~~~~~--~l~~~ 275 (394)
T 3b7f_A 206 DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------CGIYRMDRREGVWKRIGD--AMPRE 275 (394)
T ss_dssp STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--------TEEEEEETTTTEEECGGG--GSCTT
T ss_pred CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--------CeEEEeCCCCCcceECCC--CCCCC
Confidence 7788999885311 11211 223444443 2 56666321 348888888999998863 12221
Q ss_pred --CceeEEEEE---CCEEEEEecccCC------CCccCcEEEEecCCCcEEEeee
Q 010011 242 --RAGHSTVAF---GKNLFVFGGFTDS------QNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 242 --R~~hs~~~~---~~~iyv~GG~~~~------~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
.....++.. .+.||+.....+. ......+++-.-...+|+.+..
T Consensus 276 ~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~ 330 (394)
T 3b7f_A 276 VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR 330 (394)
T ss_dssp TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB
T ss_pred CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC
Confidence 334444432 3567775311100 0001234443333368999863
No 222
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=76.65 E-value=15 Score=38.35 Aligned_cols=193 Identities=12% Similarity=-0.009 Sum_probs=93.0
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
.+++.+++..+.. +.+.+||+.+++..++.. .+. ... +..-+++..++++.+... ...++++|+.+.
T Consensus 119 ~dg~~~~~~s~~~------~~~~l~d~~~g~~~~l~~---~~~--~~~-~~spDG~~la~~~~~~~~-~~~i~~~d~~~g 185 (582)
T 3o4h_A 119 DTGEAVVFTGATE------DRVALYALDGGGLRELAR---LPG--FGF-VSDIRGDLIAGLGFFGGG-RVSLFTSNLSSG 185 (582)
T ss_dssp ECSSCEEEEEECS------SCEEEEEEETTEEEEEEE---ESS--CEE-EEEEETTEEEEEEEEETT-EEEEEEEETTTC
T ss_pred CCCCeEEEEecCC------CCceEEEccCCcEEEeec---CCC--ceE-EECCCCCEEEEEEEcCCC-CeEEEEEcCCCC
Confidence 4455555554432 224477888888777652 111 222 222344444444432221 235999999998
Q ss_pred eEEeecccCCCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeE---
Q 010011 121 TWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC--- 196 (520)
Q Consensus 121 ~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~--- 196 (520)
+++.+.. .... ....+. .+++.++.+.. .+ ...++++|+++.+...+. . . ........
T Consensus 186 ~~~~l~~---~~~~--~~~~~~SpDG~~l~~~~~------~~---~~~i~~~d~~~~~~~~~~-~--~-~~~~~~~~~~~ 247 (582)
T 3o4h_A 186 GLRVFDS---GEGS--FSSASISPGMKVTAGLET------AR---EARLVTVDPRDGSVEDLE-L--P-SKDFSSYRPTA 247 (582)
T ss_dssp CCEEECC---SSCE--EEEEEECTTSCEEEEEEC------SS---CEEEEEECTTTCCEEECC-C--S-CSHHHHHCCSE
T ss_pred CceEeec---CCCc--cccceECCCCCEEEEccC------CC---eeEEEEEcCCCCcEEEcc-C--C-CcChhhhhhcc
Confidence 8876541 1111 112222 24444333331 11 246899999988877222 1 1 00000011
Q ss_pred -----EeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEE
Q 010011 197 -----SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLY 271 (520)
Q Consensus 197 -----~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~ 271 (520)
..-++++++.+..++ .+..|+. .+... .+.......+.. ++++++.++... ....++
T Consensus 248 ~~~~~~spdg~~~~~~~~~g------~~~l~~~--g~~~~------~~~~~v~~~~~s-dg~~l~~~s~~~---~p~~l~ 309 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREG------RSAVFID--GERVE------APQGNHGRVVLW-RGKLVTSHTSLS---TPPRIV 309 (582)
T ss_dssp EEEEEECTTSCEEEEEEETT------EEEEEET--TEEEC------CCSSEEEEEEEE-TTEEEEEEEETT---EEEEEE
T ss_pred ccceeEcCCCcEEEEEEcCC------cEEEEEE--CCeec------cCCCceEEEEec-CCEEEEEEcCCC---CCCeEE
Confidence 223566776665432 3556666 33322 111111122334 778777665432 235688
Q ss_pred EEecCCCcEEEe
Q 010011 272 MIDVDSGLWTKV 283 (520)
Q Consensus 272 ~yd~~~~~W~~l 283 (520)
.+|..+ ..+.+
T Consensus 310 ~~d~~~-~~~~l 320 (582)
T 3o4h_A 310 SLPSGE-PLLEG 320 (582)
T ss_dssp EETTCC-EEECC
T ss_pred EEcCCC-ceEEE
Confidence 888765 44433
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=76.46 E-value=1.1 Score=44.85 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=31.1
Q ss_pred EEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEE
Q 010011 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~ 113 (520)
++.++. ++.||+.+. + ..++.+|..++ .|+... +. ...+.+..++++|+.|+.+ ..++
T Consensus 3 ssP~v~-~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~--~~-----~~s~p~~~~g~~~v~~s~d-----g~l~ 62 (369)
T 2hz6_A 3 STVTLP-ETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE--DP-----VLQVPTHVEEPAFLPDPND-----GSLY 62 (369)
T ss_dssp -----C-TTEEEEEET-T------SEEEEEETTTCCEEEEEEC--CC-----SCCCC-----CCEEECTTT-----CCEE
T ss_pred CCCeee-CCEEEEEcC-C------CEEEEEECCCCCEEEEecC--CC-----ceecceEcCCCEEEEeCCC-----CEEE
Confidence 344453 556765432 1 35899998776 477632 11 1122334566788876543 3589
Q ss_pred EEECCCC--eEEe
Q 010011 114 ILDTSSH--TWIS 124 (520)
Q Consensus 114 ~yd~~t~--~W~~ 124 (520)
++|..+. .|+.
T Consensus 63 a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 63 TLGSKNNEGLTKL 75 (369)
T ss_dssp EC-----CCSEEC
T ss_pred EEECCCCceeeee
Confidence 9998664 4653
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=76.25 E-value=62 Score=31.83 Aligned_cols=75 Identities=11% Similarity=-0.009 Sum_probs=41.4
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECCEEEEEcCCCCC----CCCCcEEEE
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGM----NPLRDLHIL 115 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~iyv~GG~~~~----~~~~~~~~y 115 (520)
.+++.+|+.-+.+.+. . ..+++||+.+++-.. .+|.....+-+.. -+..+|+..-.... ...+.+.+|
T Consensus 30 ~~~~~~yv~~~~~~~~-~-~~v~v~D~~t~~~~~-----~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 30 ADGRRSYINLPAHHSA-I-IQQWVLDAGSGSILG-----HVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCEEEEeCCcccCC-c-cEEEEEECCCCeEEE-----EecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 4567788875421111 1 178999998876432 3333332222222 25578887522111 124668899
Q ss_pred ECCCCeE
Q 010011 116 DTSSHTW 122 (520)
Q Consensus 116 d~~t~~W 122 (520)
|+.+.+-
T Consensus 103 D~~t~~~ 109 (373)
T 2mad_H 103 DPVTFLP 109 (373)
T ss_pred ECCCCcE
Confidence 9987653
No 225
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=75.91 E-value=46 Score=30.11 Aligned_cols=110 Identities=10% Similarity=0.091 Sum_probs=59.7
Q ss_pred EEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeE---EeeeccCCCCCCCCcceEE-EE--CCEEEEEcCCCCCCCCCcE
Q 010011 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW---SQPVIKGSPPTPRDSHSCT-TV--GENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 39 ~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W---~~l~~~g~~P~~R~~hs~~-~~--~~~iyv~GG~~~~~~~~~~ 112 (520)
....+++||+|=| +.+|+|+-.+-.- +.+...| +|..-..--++ .. ++++|+|-| +..
T Consensus 75 ~~~~~~~iyfFkG--------~~~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG-------~~y 138 (207)
T 1pex_A 75 EHPSHDLIFIFRG--------RKFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQV 138 (207)
T ss_dssp EETTTTEEEEEET--------TEEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEE
T ss_pred EeccCCcEEEEcc--------CEEEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC-------CEE
Confidence 3333468999976 4578886432111 1121111 23211112222 22 479999987 478
Q ss_pred EEEECCCCeEEe-----eccc-CCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE
Q 010011 113 HILDTSSHTWIS-----PSVR-GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (520)
Q Consensus 113 ~~yd~~t~~W~~-----~~~~-g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~ 179 (520)
|+||..+++-.. +... ..+| ..-.++...++.+|+|-| +..|+||..+.+-.
T Consensus 139 wr~d~~~~~~d~gyPr~i~~~~~Gip--~~iDaAf~~~g~~YfFkg-------------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 139 WRYDDTNHIMDKDYPRLIEEDFPGIG--DKVDAVYEKNGYIYFFNG-------------PIQFEYSIWSNRIV 196 (207)
T ss_dssp EEEETTTTEECSSCCCBHHHHSTTSC--SCCSEEEEETTEEEEEET-------------TEEEEEETTTTEEE
T ss_pred EEEeCcCccccCCCCccHHHcCCCCC--CCccEEEEcCCcEEEEEC-------------CEEEEEeCCccEEe
Confidence 999988765321 1100 0122 222344456899999988 56789998765543
No 226
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=75.65 E-value=75 Score=32.46 Aligned_cols=174 Identities=10% Similarity=0.043 Sum_probs=80.3
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
+++.++.|+.+ ..+.+||.....-..+.. . ...-..+.+ +++.++.|+. ...+.+|
T Consensus 355 ~g~~l~~~~~d-----g~v~~~~~~~~~~~~~~~---~---~~~v~~~~~s~dg~~l~~~~~-----------d~~v~~~ 412 (577)
T 2ymu_A 355 DGQTIASASDD-----KTVKLWNRNGQLLQTLTG---H---SSSVRGVAFSPDGQTIASASD-----------DKTVKLW 412 (577)
T ss_dssp TSSEEEEEETT-----SEEEEEETTCCEEEEEEC---C---SSCEEEEEECTTSSCEEEEET-----------TSEEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEcCCCCEEEEecC---C---CCCeEEEEECCCCCEEEEEeC-----------CCEEEEE
Confidence 45566666543 246777865544433321 0 011112222 4556666663 1346677
Q ss_pred EcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEEC
Q 010011 172 NTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG 251 (520)
Q Consensus 172 d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~ 251 (520)
|........+.. ............++++++.++.++ .+..||.....-..+.. ........+..-+
T Consensus 413 ~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~d~------~v~~w~~~~~~~~~~~~----~~~~v~~~~~spd 478 (577)
T 2ymu_A 413 NRNGQLLQTLTG----HSSSVWGVAFSPDDQTIASASDDK------TVKLWNRNGQLLQTLTG----HSSSVRGVAFSPD 478 (577)
T ss_dssp CTTCCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTS------EEEEEETTSCEEEEEEC----CSSCEEEEEECTT
T ss_pred eCCCCEEEEecC----CCCCeEEEEECCCCCEEEEEcCCC------EEEEEECCCCEEEEEcC----CCCCEEEEEEcCC
Confidence 765444333321 111111111222666777776543 37778876655444432 1111111222235
Q ss_pred CEEEEEecccCCCCccCcEEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCC
Q 010011 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (520)
Q Consensus 252 ~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (520)
+++++.|+.+. .+.+||.....-..+... . ....+.++ ..++.+++.||.+.
T Consensus 479 ~~~las~~~d~------~i~iw~~~~~~~~~~~~h----~--~~v~~l~~--s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 479 GQTIASASDDK------TVKLWNRNGQLLQTLTGH----S--SSVRGVAF--SPDGQTIASASDDK 530 (577)
T ss_dssp SCEEEEEETTS------EEEEEETTSCEEEEEECC----S--SCEEEEEE--CTTSSCEEEEETTS
T ss_pred CCEEEEEeCCC------EEEEEcCCCCEEEEEeCC----C--CCEEEEEE--cCCCCEEEEEECcC
Confidence 67777776532 378888655433333221 1 11122222 34566677777554
No 227
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=75.06 E-value=1e+02 Score=33.80 Aligned_cols=202 Identities=10% Similarity=0.107 Sum_probs=100.6
Q ss_pred eEEEEECCCCeEEeeeccCCCC----CCCCcceEEEEC---CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCC-
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPP----TPRDSHSCTTVG---ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGP- 132 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P----~~R~~hs~~~~~---~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p- 132 (520)
.+++-+-.-.+|+.+.. .+. ..+.-++++... +.+|+..|.........+++=+-.-.+|+++......+
T Consensus 38 gv~rS~DgG~tW~~~~~--~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~ 115 (789)
T 1sqj_A 38 GAYRWDAGTSKWIPLND--FIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGA 115 (789)
T ss_dssp CEEEEETTTTEEEESCT--TCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCT
T ss_pred CEEEecCCCCCeeECcc--CCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCc
Confidence 47887777889998642 111 123344444432 46888766422111134454444457899876321111
Q ss_pred --CCC-CCceEEEEC---CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCC-CCCcceeEEee---CCE
Q 010011 133 --EAR-EGHSAALVG---KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP-SARDSHTCSSW---KNK 202 (520)
Q Consensus 133 --~~r-~~hs~~~~~---~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p-~~r~~h~~~~~---~~~ 202 (520)
..| ..+.+++.. +.+|+ |.. ...+++-+-.-.+|+++....... .....+.+++. .+.
T Consensus 116 ~~~~~~~~~~iav~p~~~~~v~~-g~~-----------~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~ 183 (789)
T 1sqj_A 116 NDMGRNNGERLAVNPFNSNEVWM-GTR-----------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGT 183 (789)
T ss_dssp TSTTTTSCCCEEEETTEEEEEEE-ECS-----------SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTC
T ss_pred cCCCccceeEEEEcCCCCCEEEE-Eec-----------cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCE
Confidence 122 234455542 45666 431 133555555567999987421110 11122223222 245
Q ss_pred EEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCC----------------CceeEEEEE--CCEEEEEecccCC-
Q 010011 203 IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP----------------RAGHSTVAF--GKNLFVFGGFTDS- 263 (520)
Q Consensus 203 lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~----------------R~~hs~~~~--~~~iyv~GG~~~~- 263 (520)
||+..... ..+++=.-.-.+|+.+.. .+.. ...|.+++. ++.||+..+....
T Consensus 184 ~~~~~~~~------~~v~~S~DgG~TW~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p 254 (789)
T 1sqj_A 184 IYASATAP------QGMYVTHDGGVSWEPVAG---QPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGP 254 (789)
T ss_dssp EEEEESST------TCEEEESSTTSSCEECTT---CCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSS
T ss_pred EEEEEcCC------CeEEEEcCCCcCcccCCC---CcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCC
Confidence 66654321 223332223567998863 2221 111443333 7888887432110
Q ss_pred -CCccCcEEEEecCCCcEEEeee
Q 010011 264 -QNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 264 -~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
......|++.+-...+|+.+..
T Consensus 255 ~~g~~g~l~~S~DgG~tW~~~~~ 277 (789)
T 1sqj_A 255 WGVTFGEVWRQNRTSGAWDDITP 277 (789)
T ss_dssp SCCCCCCEEEEETTTCCEEECCC
T ss_pred CCCCCceEEEEeCCCCceEECcC
Confidence 0123458999888899999875
No 228
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=74.27 E-value=25 Score=33.22 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=73.3
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEEC----CEEEEEeCCCCCCCCCCcceeceeEE
Q 010011 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG----KRLFIFGGCGKSSNTNDEVYYNDLYI 170 (520)
Q Consensus 95 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~----~~lyv~GG~~~~~~~~~~~~~~~v~~ 170 (520)
..+++.|+.+. .-..+.+||+.+.+.......+ ....-.+++... +.+++.|+. ...+.+
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~-----------dg~i~i 94 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIE---KAKPIKCGTFGATSLQQRYLATGDF-----------GGNLHI 94 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEE---ESSCEEEEECTTCCTTTCCEEEEET-----------TSCEEE
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeec---ccCcEEEEEEcCCCCCCceEEEecC-----------CCeEEE
Confidence 35666665421 1245888888887765432111 111111222222 366666663 234677
Q ss_pred EEcCcce--EEEcccCCCCCCCCcceeEE-------eeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeeCCCCCC
Q 010011 171 LNTETFV--WKRATTSGNPPSARDSHTCS-------SWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVL 239 (520)
Q Consensus 171 ~d~~t~~--W~~v~~~~~~p~~r~~h~~~-------~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~~~~~~~~p 239 (520)
+|+.+.. ...+.. . ...-.++. ..++.+++.|+.++ .+..||+.+.. ...+.... ..
T Consensus 95 wd~~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~-~~ 162 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKG---H--KEIINAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQ-GE 162 (357)
T ss_dssp ECTTSCSSCSEEECC---C--SSCEEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCCT-TS
T ss_pred EeCCCCCccEEEEEe---c--ccceEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceeccccC-CC
Confidence 7776543 222210 0 00111111 12456777777543 47888887654 33333211 01
Q ss_pred CCCceeEEE-----EECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 240 SPRAGHSTV-----AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 240 ~~R~~hs~~-----~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
..+.-.+++ ..++.+++.|+.. ..+.+||+.+..-...
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~ 205 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRWE 205 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccC------CeEEEEECccCceeee
Confidence 111222222 1356677777653 3489999998765433
No 229
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=73.11 E-value=45 Score=30.42 Aligned_cols=113 Identities=11% Similarity=0.179 Sum_probs=59.9
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe--E-EeeeccCCCCCCCCcceEEE--ECCEEEEEcCCCCCCCCCc
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT--W-SQPVIKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W-~~l~~~g~~P~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~ 111 (520)
+.....++++|+|=| +.+|+||-.+-. + +.+..-|-+.....-.++.. .++++|+|-| +.
T Consensus 81 A~~~~~~~k~yfFkG--------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ 145 (218)
T 1gen_A 81 VYEAPQEEKAVFFAG--------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DK 145 (218)
T ss_dssp EEEETTTTEEEEEET--------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TE
T ss_pred EEEECCCCEEEEEeC--------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CE
Confidence 333444668999966 568999852110 0 01111121111112233333 2689999977 46
Q ss_pred EEEEECCCCeEEee---ccc-CCCCCCCCCceEEEEC--CEEEEEeCCCCCCCCCCcceeceeEEEEcCcce
Q 010011 112 LHILDTSSHTWISP---SVR-GEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (520)
Q Consensus 112 ~~~yd~~t~~W~~~---~~~-g~~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~ 177 (520)
.|+||..+++-..- .+. .=+..+..-.++.... +.+|+|-| +..|+||..+..
T Consensus 146 ywr~d~~~~~v~~gyPr~i~~~w~g~p~~idaAf~~~~~g~~YfFkg-------------~~y~~~~~~~~~ 204 (218)
T 1gen_A 146 FWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG-------------AYYLKLENQSLK 204 (218)
T ss_dssp EEEEETTTTEECSSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEET-------------TEEEEEETTEEE
T ss_pred EEEEECccccccCCCCcchhhccCCCCCCCCEEEEEcCCCcEEEEEC-------------CEEEEEECCcee
Confidence 89999887653211 000 0011222233444444 79999988 457888876554
No 230
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=72.68 E-value=67 Score=30.53 Aligned_cols=61 Identities=10% Similarity=0.202 Sum_probs=30.6
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSH 120 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~ 120 (520)
.+++.|+.+ ..+.++|..+++....- .+.. ..-.+++.. +++.++.||.+ ..+.++|+...
T Consensus 89 ~~l~s~s~D------~~v~lwd~~~~~~~~~~-~~h~---~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~~~~ 150 (343)
T 2xzm_R 89 CFAISSSWD------KTLRLWDLRTGTTYKRF-VGHQ---SEVYSVAFSPDNRQILSAGAE-----REIKLWNILGE 150 (343)
T ss_dssp TEEEEEETT------SEEEEEETTSSCEEEEE-ECCC---SCEEEEEECSSTTEEEEEETT-----SCEEEEESSSC
T ss_pred CEEEEEcCC------CcEEEEECCCCcEEEEE-cCCC---CcEEEEEECCCCCEEEEEcCC-----CEEEEEeccCC
Confidence 355555532 45888998877644311 1110 111122221 45566666654 34777787643
No 231
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=72.02 E-value=69 Score=30.40 Aligned_cols=104 Identities=11% Similarity=0.086 Sum_probs=55.0
Q ss_pred CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEE
Q 010011 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHIL 222 (520)
Q Consensus 144 ~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~y 222 (520)
++.+++.|+. ...+.++|+.+.+-..+... .......+++. .++.+++.|+.++ .+..|
T Consensus 138 ~~~~l~s~s~-----------dg~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~~lasg~~dg------~i~iw 197 (343)
T 3lrv_A 138 NTEYFIWADN-----------RGTIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSLLLALYSPDG------ILDVY 197 (343)
T ss_dssp -CCEEEEEET-----------TCCEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSCEEEEECTTS------CEEEE
T ss_pred CCCEEEEEeC-----------CCcEEEEECCCCcEEEEEec---CCCCceEEEEECCCCCEEEEEcCCC------EEEEE
Confidence 4556776773 23577888887765433211 11111122222 3677888887553 48889
Q ss_pred ECCCCcEE--EeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 223 DTDTLTWK--ELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 223 d~~t~~W~--~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
|+.+.+-. .+.. . ....-.++.+ ++..++.|+ .+ .+.+||+.+..
T Consensus 198 d~~~~~~~~~~~~~----~-h~~~v~~l~fs~~g~~l~s~~-~~------~v~iwd~~~~~ 246 (343)
T 3lrv_A 198 NLSSPDQASSRFPV----D-EEAKIKEVKFADNGYWMVVEC-DQ------TVVCFDLRKDV 246 (343)
T ss_dssp ESSCTTSCCEECCC----C-TTSCEEEEEECTTSSEEEEEE-SS------BEEEEETTSST
T ss_pred ECCCCCCCccEEec----c-CCCCEEEEEEeCCCCEEEEEe-CC------eEEEEEcCCCC
Confidence 98876532 2211 0 1111222222 455666666 22 48999988764
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=71.44 E-value=53 Score=30.77 Aligned_cols=103 Identities=8% Similarity=0.062 Sum_probs=53.9
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (520)
..+++||+.++++..+. ... .-.+.+.. +..||+..........+.+++||+..............+.. .-
T Consensus 169 ~~v~~~d~~~g~~~~~~-~~~-----~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~-~p 241 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA-DLD-----HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG-LP 241 (305)
T ss_dssp EEEEEECSSSCCCEEEE-EES-----SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS-CC
T ss_pred CeEEEEcCCCCcEEEEe-cCC-----CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC-CC
Confidence 56999999888877653 111 11233332 33588775322111235799999876553221111111111 11
Q ss_pred ceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc
Q 010011 138 HSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (520)
Q Consensus 138 hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~ 182 (520)
..++. .+++||+..+ ..+++||++......+.
T Consensus 242 dgi~~d~~G~lwv~~~-------------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 242 DGFCVDRGGWLWSSSG-------------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp CSEEECTTSCEEECCS-------------SEEEEECTTSCEEEEEE
T ss_pred CeEEECCCCCEEEecC-------------CcEEEECCCCCEEEEEE
Confidence 12333 2467777432 34899999877666664
No 233
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=71.32 E-value=83 Score=31.08 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=79.3
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE--Eeeccc-CCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcc
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW--ISPSVR-GEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEV 163 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~-g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~ 163 (520)
+++.+++++|+|=|. .+|+++.....- ..+... ..+|. ... ++... ++++|+|-|
T Consensus 185 Av~~~~g~~~fFkg~-------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg----------- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR-------FFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD----------- 244 (365)
T ss_dssp CEEEETTEEEEEETT-------EEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET-----------
T ss_pred eEEEcCCeEEEEeCC-------EEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC-----------
Confidence 455678899999763 466665433211 111111 12332 222 23333 689999987
Q ss_pred eeceeEEEEcCcce--E-EEcccCCCCCC-CCcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCC--
Q 010011 164 YYNDLYILNTETFV--W-KRATTSGNPPS-ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-- 235 (520)
Q Consensus 164 ~~~~v~~~d~~t~~--W-~~v~~~~~~p~-~r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~-- 235 (520)
+.+|+|+..... + +.+...| .|. +..--++... ++++|+|-| +..|+||..+.+-..--+.
T Consensus 245 --~~yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyPk~I 313 (365)
T 3ba0_A 245 --DKYWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYPKLI 313 (365)
T ss_dssp --TEEEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCCCH
T ss_pred --CEEEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCCcch
Confidence 346777543211 1 1232221 232 1111223333 589999966 4589999876542210000
Q ss_pred --CCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCCcEEE
Q 010011 236 --GMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 236 --~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (520)
+-+..+..-.++... ++++|+|-|. ..|+||..+.+-..
T Consensus 314 ~~~f~g~p~~iDaA~~~~~g~~YfFkg~--------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 314 TKNFQGIGPKIDAVFYSKNKYYYFFQGS--------NQFEYDFLLQRITK 355 (365)
T ss_dssp HHHSTTCCSSCSEEEEETTTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred hhcCCCCCCccceeeEecCCcEEEEeCC--------EEEEEECCccEEec
Confidence 001122223344445 7889999874 38999988877554
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=70.96 E-value=71 Score=30.13 Aligned_cols=204 Identities=10% Similarity=-0.059 Sum_probs=100.5
Q ss_pred EEEc-CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCC-CCCCCCcceEEEE--CCEEEEEcCCCC--------
Q 010011 38 NAIK-GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGS-PPTPRDSHSCTTV--GENLYVFGGTDG-------- 105 (520)
Q Consensus 38 ~~v~-~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~-~P~~R~~hs~~~~--~~~iyv~GG~~~-------- 105 (520)
+++. .++.|||.-.. ..+++||+.++..+.+..... .+. ..-..++.. ++.||+.-....
T Consensus 85 i~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~-~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 85 ISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPF-KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp EEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEEC-SCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred EEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcc-cccceEEEecCCCEEEEECCcccccccccce
Confidence 3444 24568886321 237889988776655431101 111 112233333 467888642210
Q ss_pred ----CCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCc---c
Q 010011 106 ----MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTET---F 176 (520)
Q Consensus 106 ----~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t---~ 176 (520)
......+++||+.+.+...+... + ..-...+.. + +.|||.-. ..+.+++|++.. .
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~--~---~~p~gia~~~dg~~lyv~d~-----------~~~~I~~~~~~~~~~~ 220 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLKE--L---HVPGGAEVSADSSFVLVAEF-----------LSHQIVKYWLEGPKKG 220 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEEE--E---SCCCEEEECTTSSEEEEEEG-----------GGTEEEEEESSSTTTT
T ss_pred ehcccCCCceEEEEeCCCCEEEEeccC--C---ccCcceEECCCCCEEEEEeC-----------CCCeEEEEECCCCcCC
Confidence 01235699999988876544211 1 112233443 2 35888632 135788998874 2
Q ss_pred eEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCC----cccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEEC
Q 010011 177 VWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHD----YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG 251 (520)
Q Consensus 177 ~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~----~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~ 251 (520)
.++.+.. .+. -..++.- ++.|||........ .....+.+||+....-..+......+ ...-.+++..+
T Consensus 221 ~~~~~~~---~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~ 293 (322)
T 2fp8_A 221 TAEVLVK---IPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHD 293 (322)
T ss_dssp CEEEEEE---CSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEET
T ss_pred ccceEEe---CCC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeC
Confidence 3333321 111 1223332 56788875321000 01245889999766555555421111 12223344567
Q ss_pred CEEEEEecccCCCCccCcEEEEecCCC
Q 010011 252 KNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 252 ~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
++|||.... .+.|.+|+++.+
T Consensus 294 g~L~v~~~~------~~~i~~~~~~~~ 314 (322)
T 2fp8_A 294 GLLYIGTLF------HGSVGILVYDKK 314 (322)
T ss_dssp TEEEEECSS------CSEEEEEEC---
T ss_pred CEEEEeecC------CCceEEEecccc
Confidence 888886533 234788876543
No 235
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=70.45 E-value=46 Score=31.28 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=17.4
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEE
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~ 230 (520)
++.+++.|+.++ .+.+||..+.+-.
T Consensus 284 ~~~~l~s~~~dg------~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 284 VHGTLATVGSDG------RFSFWDKDARTKL 308 (368)
T ss_dssp TTCCEEEEETTS------CEEEEETTTTEEE
T ss_pred CCCEEEEEccCC------eEEEEECCCCcEE
Confidence 566777777553 4889999876543
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=70.41 E-value=64 Score=29.41 Aligned_cols=200 Identities=6% Similarity=-0.038 Sum_probs=107.5
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcE
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~ 112 (520)
|..+.-..++.||+.-.. .+.+++||+....-..+. .... ..-++++.. +++||+.-.. .+.+
T Consensus 39 ~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~-~~~~---~~p~~ia~d~~~~~lyv~d~~-----~~~I 103 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTII-RQDL---GSPEGIALDHLGRTIFWTDSQ-----LDRI 103 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEE-CTTC---CCEEEEEEETTTTEEEEEETT-----TTEE
T ss_pred EEEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEE-ECCC---CCccEEEEEecCCeEEEEECC-----CCEE
Confidence 444444456789886432 256999998876533332 1111 122444443 5789988532 3578
Q ss_pred EEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCC
Q 010011 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (520)
Q Consensus 113 ~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~ 190 (520)
+++|+....-+.+... ....| ..+++. +++||+..... ....+++++++...-+.+... ..
T Consensus 104 ~~~~~~g~~~~~~~~~-~~~~P---~~i~vd~~~g~lyv~~~~~---------~~~~I~~~~~dg~~~~~~~~~-~~--- 166 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDT-GLVNP---RGIVTDPVRGNLYWTDWNR---------DNPKIETSHMDGTNRRILAQD-NL--- 166 (267)
T ss_dssp EEEETTSCSCEEEECS-SCSSE---EEEEEETTTTEEEEEECCS---------SSCEEEEEETTSCCCEEEECT-TC---
T ss_pred EEEEcCCCCEEEEEEC-CCCCc---cEEEEeeCCCEEEEEECCC---------CCcEEEEEecCCCCcEEEEEC-CC---
Confidence 9999875432222111 11111 234443 57899975410 124678888765433333211 11
Q ss_pred CcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccC
Q 010011 191 RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (520)
Q Consensus 191 r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 268 (520)
..-..+++- ++.||+.--. .+.++++|+.+..-..+... ...| ..++..++.+|+.... .+
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~--~~~P---~gi~~d~~~lyva~~~------~~ 229 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAG------THRAECLNPAQPGRRKVLEG--LQYP---FAVTSYGKNLYYTDWK------TN 229 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETT------TTEEEEEETTEEEEEEEEEC--CCSE---EEEEEETTEEEEEETT------TT
T ss_pred CCCcEEEEcCCCCEEEEEECC------CCEEEEEecCCCceEEEecC--CCCc---eEEEEeCCEEEEEECC------CC
Confidence 122333433 5789887532 35699999976543333221 1222 3445568889986533 24
Q ss_pred cEEEEecCCCcEEEe
Q 010011 269 DLYMIDVDSGLWTKV 283 (520)
Q Consensus 269 dv~~yd~~~~~W~~l 283 (520)
.|+++|+++.+-...
T Consensus 230 ~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 230 SVIAMDLAISKEMDT 244 (267)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCCceEE
Confidence 599999988765443
No 237
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=69.62 E-value=74 Score=29.80 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=50.6
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE--CCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
+.+++.|+.++ .+.+||+.+.+-...-. . ....-.++... ++.+++.|+.+. .+.+||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV---G-HGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE---S-CCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec---C-CCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeecC
Confidence 57888887653 48888987765332211 0 11111122222 456777777643 4899999887
Q ss_pred cEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 279 LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 279 ~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
.-...... ............+ ..++..++.|+.+..
T Consensus 149 ~~~~~~~~--~~~~~~~v~~~~~--~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 149 TLVAIFGG--VEGHRDEVLSADY--DLLGEKIMSCGMDHS 184 (366)
T ss_dssp EEEEEECS--TTSCSSCEEEEEE--CTTSSEEEEEETTSC
T ss_pred eEEEEecc--cccccCceeEEEE--CCCCCEEEEecCCCC
Confidence 65443211 0111112222223 235566777776543
No 238
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=69.25 E-value=1.5e+02 Score=33.31 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=95.1
Q ss_pred EEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEe
Q 010011 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (520)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 124 (520)
.+++.+..+ ....+|.++.....-..+.... .....+..-+++.++++. -..++.+|+.+.....
T Consensus 215 ~l~~~~~~d----g~~~l~~~~~~g~~~~~l~~~~-----~~~~~~~SpDG~~la~~~------~~~i~~~d~~~~~l~~ 279 (1045)
T 1k32_A 215 RIYFITDID----GFGQIYSTDLDGKDLRKHTSFT-----DYYPRHLNTDGRRILFSK------GGSIYIFNPDTEKIEK 279 (1045)
T ss_dssp EEEEEECTT----SSCEEEEEETTSCSCEECCCCC-----SSCEEEEEESSSCEEEEE------TTEEEEECTTTCCEEE
T ss_pred EEEEEEecc----CceEEEEEeCCCCcceEecCCC-----CcceeeEcCCCCEEEEEe------CCEEEEecCCceEeee
Confidence 566655432 2246888888776655543111 111112233555444431 2468888875554443
Q ss_pred ecccCCCCCC------CCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeE
Q 010011 125 PSVRGEGPEA------REGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (520)
Q Consensus 125 ~~~~g~~p~~------r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~ 196 (520)
+........+ ..-.+++.. +++.++++. ...++.++..+.....+.. .+..+..+..
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~------------~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~ 344 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS------------RGQAFIQDVSGTYVLKVPE---PLRIRYVRRG 344 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE------------TTEEEEECTTSSBEEECSC---CSCEEEEEEC
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEE------------cCEEEEEcCCCCceEEccC---CCcceEEeee
Confidence 2211000000 012233333 444444433 1357788877766555431 1110111222
Q ss_pred EeeCCEEEEEecCCCCCcccCceE-EEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEec
Q 010011 197 SSWKNKIIVIGGEDGHDYYLSDVH-ILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~-~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
.. +++.+++++. ...++ .+|..+.+...+.. ........+..-+++.+++++.. .+++++|+
T Consensus 345 ~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~~----~~~~~~~~~~SpDG~~la~~~~~------~~v~~~d~ 407 (1045)
T 1k32_A 345 GD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFEE----NLGNVFAMGVDRNGKFAVVANDR------FEIMTVDL 407 (1045)
T ss_dssp SS-SEEEEEEEET------TEEEEEEEETTTCCEEECCC----CCCSEEEEEECTTSSEEEEEETT------SEEEEEET
T ss_pred Ec-CCCeEEEEEC------CCceEEEEECCCCCceEecC----CccceeeeEECCCCCEEEEECCC------CeEEEEEC
Confidence 22 5555555543 24688 89998877665531 11122222223355666666542 36999999
Q ss_pred CCCcEEEeee
Q 010011 276 DSGLWTKVIT 285 (520)
Q Consensus 276 ~~~~W~~l~~ 285 (520)
+++.-..+..
T Consensus 408 ~tg~~~~~~~ 417 (1045)
T 1k32_A 408 ETGKPTVIER 417 (1045)
T ss_dssp TTCCEEEEEE
T ss_pred CCCceEEecc
Confidence 9988777653
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=68.84 E-value=75 Score=29.56 Aligned_cols=138 Identities=19% Similarity=0.267 Sum_probs=68.8
Q ss_pred EECCEEEEEcCCCCCCCCCcEEEEECC-CCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeE
Q 010011 92 TVGENLYVFGGTDGMNPLRDLHILDTS-SHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLY 169 (520)
Q Consensus 92 ~~~~~iyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~ 169 (520)
..++.||+... ...+++||+. ...|.... +.. ...+.+.. ++.||+ |.. ...++
T Consensus 105 ~~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~-----~~~-~~~~~~~~~~g~l~v-gt~-----------~~~l~ 160 (330)
T 3hxj_A 105 IFEDILYVTSM------DGHLYAINTDGTEKWRFKT-----KKA-IYATPIVSEDGTIYV-GSN-----------DNYLY 160 (330)
T ss_dssp EETTEEEEECT------TSEEEEECTTSCEEEEEEC-----SSC-CCSCCEECTTSCEEE-ECT-----------TSEEE
T ss_pred EECCEEEEEec------CCEEEEEcCCCCEEEEEcC-----CCc-eeeeeEEcCCCEEEE-EcC-----------CCEEE
Confidence 34888887532 2468999987 34475432 111 12223334 566766 331 24688
Q ss_pred EEEcCc-ceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCC-CcEEEeeCCCCCCCCCceeE
Q 010011 170 ILNTET-FVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHS 246 (520)
Q Consensus 170 ~~d~~t-~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W~~~~~~~~~p~~R~~hs 246 (520)
+||... ..|..... .. ...+++. .++.||+-. ..+++||... ..|+.... .. ...+
T Consensus 161 ~~d~~g~~~~~~~~~-----~~-~~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~-----~~-~~~~ 219 (330)
T 3hxj_A 161 AINPDGTEKWRFKTN-----DA-ITSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAG-----YW-TVTR 219 (330)
T ss_dssp EECTTSCEEEEEECS-----SC-CCSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCS-----SC-CCSC
T ss_pred EECCCCCEeEEEecC-----CC-ceeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccC-----Cc-ceec
Confidence 899872 23654321 11 1222333 366677643 3588899442 34654321 11 1122
Q ss_pred EEEE-CCEEEEEecccCCCCccCcEEEEecCCCc-EE
Q 010011 247 TVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL-WT 281 (520)
Q Consensus 247 ~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~-W~ 281 (520)
.+.. ++.||+.. .. ..+++||..... |.
T Consensus 220 ~~~~~~g~l~v~t-~~------~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 220 PAISEDGTIYVTS-LD------GHLYAINPDGTEKWR 249 (330)
T ss_dssp CEECTTSCEEEEE-TT------TEEEEECTTSCEEEE
T ss_pred eEECCCCeEEEEc-CC------CeEEEECCCCCEeEE
Confidence 2333 34666643 21 238888865544 44
No 240
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=68.65 E-value=1.6e+02 Score=33.21 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
++++++.+..++ ...+|.+++.+..-..+... . .....+...+++.++++. ...++.+|+
T Consensus 213 ~d~l~~~~~~dg---~~~l~~~~~~g~~~~~l~~~---~--~~~~~~~SpDG~~la~~~------------~~~i~~~d~ 272 (1045)
T 1k32_A 213 GHRIYFITDIDG---FGQIYSTDLDGKDLRKHTSF---T--DYYPRHLNTDGRRILFSK------------GGSIYIFNP 272 (1045)
T ss_dssp TTEEEEEECTTS---SCEEEEEETTSCSCEECCCC---C--SSCEEEEEESSSCEEEEE------------TTEEEEECT
T ss_pred CCEEEEEEeccC---ceEEEEEeCCCCcceEecCC---C--CcceeeEcCCCCEEEEEe------------CCEEEEecC
Confidence 445555554321 24577777665544333211 1 111123334555444442 245778887
Q ss_pred CcceEEEcccCCCCCCC-------CcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCcee
Q 010011 174 ETFVWKRATTSGNPPSA-------RDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 245 (520)
Q Consensus 174 ~t~~W~~v~~~~~~p~~-------r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~h 245 (520)
.......+......... ........ -+++.++++. ...++.++..+.....+.. .+..+..+
T Consensus 273 ~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-------~~~i~~~~~~~~~~~~~~~---~~~~~~~~ 342 (1045)
T 1k32_A 273 DTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-------RGQAFIQDVSGTYVLKVPE---PLRIRYVR 342 (1045)
T ss_dssp TTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-------TTEEEEECTTSSBEEECSC---CSCEEEEE
T ss_pred CceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-------cCEEEEEcCCCCceEEccC---CCcceEEe
Confidence 65555544321100000 11122223 3455444443 2358888888776555432 11112222
Q ss_pred EEEEECCEEEEEecccCCCCccCcEE-EEecCCCcEEEee
Q 010011 246 STVAFGKNLFVFGGFTDSQNLYDDLY-MIDVDSGLWTKVI 284 (520)
Q Consensus 246 s~~~~~~~iyv~GG~~~~~~~~~dv~-~yd~~~~~W~~l~ 284 (520)
.+.. +++.+++++. -..+| ++|+.+.....+.
T Consensus 343 ~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~ 375 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFE 375 (1045)
T ss_dssp ECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECC
T ss_pred eeEc-CCCeEEEEEC------CCceEEEEECCCCCceEec
Confidence 2333 5555555543 24689 9999888766554
No 241
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=68.43 E-value=98 Score=30.73 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.1
Q ss_pred cceEEEEEcCCCEEEEEcC
Q 010011 33 WGHTCNAIKGGRFLYVFGG 51 (520)
Q Consensus 33 ~ghs~~~v~~g~~Iyi~GG 51 (520)
..|+++...++..+|.+|-
T Consensus 77 ~~ht~al~~~gg~v~~wG~ 95 (406)
T 4d9s_A 77 ADHTVAYSQSGMEVYSWGW 95 (406)
T ss_dssp SSEEEEEETTTTEEEEEEC
T ss_pred cceEEEEECCCCEEEEEcC
Confidence 3577777766668999984
No 242
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=62.90 E-value=1e+02 Score=29.12 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=60.9
Q ss_pred CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEE-eeCCEEEEEecCCCCCcccCceEEEE
Q 010011 145 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILD 223 (520)
Q Consensus 145 ~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~-~~~~~lyv~GG~~~~~~~~~~i~~yd 223 (520)
+.+|+++.. ...+++||+.+.+...+.. +. .-.+++ .-++++++... +.+++||
T Consensus 61 ~~l~~~d~~-----------~~~i~~~d~~~~~~~~~~~----~~--~v~~i~~~~dg~l~v~~~--------~gl~~~d 115 (326)
T 2ghs_A 61 GTAWWFNIL-----------ERELHELHLASGRKTVHAL----PF--MGSALAKISDSKQLIASD--------DGLFLRD 115 (326)
T ss_dssp TEEEEEEGG-----------GTEEEEEETTTTEEEEEEC----SS--CEEEEEEEETTEEEEEET--------TEEEEEE
T ss_pred CEEEEEECC-----------CCEEEEEECCCCcEEEEEC----CC--cceEEEEeCCCeEEEEEC--------CCEEEEE
Confidence 577777542 2468999998877665532 11 122232 24778877541 2499999
Q ss_pred CCCCcEEEeeCCCC-CCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 224 TDTLTWKELNTSGM-VLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 224 ~~t~~W~~~~~~~~-~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
+++.+.+.+..... .+..+....++.-++++|+.............||++| +.+...+
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 99998887754211 1111222222223466766332111112235689998 5666555
No 243
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=62.79 E-value=1.4e+02 Score=30.53 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCC
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
++++|+|-| +..|.||..+.+...-.-.+ . +. --++....+++|+|-|.. .|+||..+.
T Consensus 158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~~w~g-i--~~-iDAA~~~~g~~YfFkG~~--------y~rfd~~~~ 216 (460)
T 1qhu_A 158 DEGILFFQG--------NRKWFWDLTTGTKKERSWPA-V--GN-CTSALRWLGRYYCFQGNQ--------FLRFNPVSG 216 (460)
T ss_dssp SSEEEEEET--------TEEEEEETTTTEEEEECCTT-S--CC-CSEEEEETTEEEEEETTE--------EEEECTTTC
T ss_pred CCeEEEEec--------ccEEEEecccceeecccCCC-C--Cc-cchheeeCCceEEEECCE--------EEEEcCccC
Confidence 678898876 35899999887665432222 2 23 345566678999998853 788887654
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=61.64 E-value=1.1e+02 Score=28.82 Aligned_cols=201 Identities=8% Similarity=-0.039 Sum_probs=97.3
Q ss_pred CeEEEEECCCCeEEeeeccCCC---------------CCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSP---------------PTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~---------------P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
..+++||+.+..+..+...... +....-++++.. +++|||.... ..+++||+.+...
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~ 113 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHA 113 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEECTTCEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEEeCCCCEE
Confidence 5689999988777654321110 000112445555 5789987421 2488999887655
Q ss_pred EeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCC-------cceeceeEEEEcCcceEEEcccCCCCCCCCcc
Q 010011 123 ISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTND-------EVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (520)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~-------~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~ 193 (520)
+.+...........-..++.. +++||+.-...... ... ......+++||+.+.+.+.+......|
T Consensus 114 ~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~-~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p----- 187 (322)
T 2fp8_A 114 TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYD-DRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP----- 187 (322)
T ss_dssp EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCC-TTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-----
T ss_pred EEecccCCCCcccccceEEEecCCCEEEEECCccccc-ccccceehcccCCCceEEEEeCCCCEEEEeccCCccC-----
Confidence 443211000011112233333 46788864311000 000 011256899999877765543211111
Q ss_pred eeEEee-C-CEEEEEecCCCCCcccCceEEEECCC---CcEEEeeCCCCCCCCCceeEEEE-ECCEEEEEecccCCC---
Q 010011 194 HTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDT---LTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQ--- 264 (520)
Q Consensus 194 h~~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t---~~W~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~--- 264 (520)
..++.- + +.|||.-. ..+.|++|++.+ ..++.+.. .+.| ..++. -+++|||........
T Consensus 188 ~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~~---~~gP---~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLVK---IPNP---GNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp CEEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEEE---CSSE---EEEEECTTSCEEEEEEEETTSSTT
T ss_pred cceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEEe---CCCC---CCeEECCCCCEEEEecCccccccc
Confidence 223332 3 45787633 135689999875 23444332 1111 12222 245788875431100
Q ss_pred -CccCcEEEEecCCCcEEEee
Q 010011 265 -NLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 265 -~~~~dv~~yd~~~~~W~~l~ 284 (520)
.....+.+||+....-..+.
T Consensus 256 ~~~~~~v~~~d~~G~~~~~~~ 276 (322)
T 2fp8_A 256 GRVDPKGIKFDEFGNILEVIP 276 (322)
T ss_dssp SCEEEEEEEECTTSCEEEEEE
T ss_pred CCCccEEEEECCCCCEEEEEE
Confidence 01245899998755444444
No 245
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=61.53 E-value=1.1e+02 Score=28.89 Aligned_cols=210 Identities=13% Similarity=0.064 Sum_probs=103.7
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCC--eEEeeeccC---CCCCCC-CcceEEEE--CCEEEEEcCCCCCCCC
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG---SPPTPR-DSHSCTTV--GENLYVFGGTDGMNPL 109 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g---~~P~~R-~~hs~~~~--~~~iyv~GG~~~~~~~ 109 (520)
+++..++.||+.... .+.+.+||+... .-..+...+ ..+... .-..++.. ++.||+..++. .
T Consensus 96 ia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~----~ 165 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC----N 165 (329)
T ss_dssp EEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS----C
T ss_pred EEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC----C
Confidence 344333347776542 245888887654 222222111 001111 12233443 57899987521 2
Q ss_pred CcEEEEECCCCeEEeecccCCC----CCCC-CCceEEEE-C-CEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc
Q 010011 110 RDLHILDTSSHTWISPSVRGEG----PEAR-EGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~----p~~r-~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~ 182 (520)
..+.+||.....-......+.. +... .-+++++. + +.|||.... .+.+.+||+.+.+....-
T Consensus 166 ~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 166 SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------NGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTTCCEEEEE
T ss_pred CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------CCEEEEEECCCCcEEEEE
Confidence 5688999655443333322221 1111 12344444 3 789998652 356889999865544332
Q ss_pred cCCCCCCCCcceeEEeeCCEEEEEecCCCC-CcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecc
Q 010011 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGF 260 (520)
Q Consensus 183 ~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~-~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~ 260 (520)
.. ........+++...+.+|+..|...- +.....+..+|+.+.+....-... ......-+.++.. ++.|||....
T Consensus 235 ~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 235 KH--ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp CC--TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESS
T ss_pred ec--cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECC
Confidence 11 11111222333344777777765321 112346899998887766543211 0111112233332 4578887754
Q ss_pred cCCCCccCcEEEEecCC
Q 010011 261 TDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 261 ~~~~~~~~dv~~yd~~~ 277 (520)
+ +.|++|+++.
T Consensus 312 ~------~~I~~~~~~~ 322 (329)
T 3fvz_A 312 T------NTVWKFTLTE 322 (329)
T ss_dssp S------CCEEEEEEEE
T ss_pred C------CEEEEEeCCc
Confidence 3 3488888653
No 246
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=61.08 E-value=1.1e+02 Score=28.69 Aligned_cols=144 Identities=9% Similarity=0.053 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~ 171 (520)
+++.++.|+.+ ..+.+||+.+.+-...- .+. ...-.++.. ++.+++.|+.+ ..+.++
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~-~~h----~~~v~~~~~~~~~~~l~s~s~D-----------~~i~vw 134 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRF-VGH----KSDVMSVDIDKKASMIISGSRD-----------KTIKVW 134 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEE-ECC----SSCEEEEEECTTSCEEEEEETT-----------SCEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEE-ccC----CCcEEEEEEcCCCCEEEEEeCC-----------CeEEEE
Confidence 45666677654 45888998887643211 110 111112222 45677777742 346677
Q ss_pred EcCcceEEEcccCCCCCCCCcceeEEee-------CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCce
Q 010011 172 NTETFVWKRATTSGNPPSARDSHTCSSW-------KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 244 (520)
Q Consensus 172 d~~t~~W~~v~~~~~~p~~r~~h~~~~~-------~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~ 244 (520)
|+....-..+... ...-..+... ++.+++.||.++ .+..+|+.+.+-...-. ..... -
T Consensus 135 d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~---~h~~~-v 199 (319)
T 3frx_A 135 TIKGQCLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADFI---GHNSN-I 199 (319)
T ss_dssp ETTSCEEEEECCC-----SSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEEC---CCCSC-E
T ss_pred ECCCCeEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheeec---CCCCc-E
Confidence 7765544433211 0011111111 233566666543 47788887765332211 01111 1
Q ss_pred eEEEE-ECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 245 HSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 245 hs~~~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
.+++. -++++++.||.+. .+.+||+.+.+
T Consensus 200 ~~~~~sp~g~~l~s~~~dg------~i~iwd~~~~~ 229 (319)
T 3frx_A 200 NTLTASPDGTLIASAGKDG------EIMLWNLAAKK 229 (319)
T ss_dssp EEEEECTTSSEEEEEETTC------EEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEeCCC------eEEEEECCCCc
Confidence 12222 2466777777543 48899988875
No 247
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=59.18 E-value=1.2e+02 Score=28.45 Aligned_cols=145 Identities=12% Similarity=0.196 Sum_probs=68.9
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
++++ .++.|+.+ ..+.+||..+++-...- .+. ...-.++.+ ++.+++.|+.++ .+.++|..
T Consensus 75 ~dg~-~l~s~s~D------~~v~~wd~~~~~~~~~~-~~h----~~~v~~~~~~~~~~~l~s~s~D~-----~i~vwd~~ 137 (319)
T 3frx_A 75 ADGA-YALSASWD------KTLRLWDVATGETYQRF-VGH----KSDVMSVDIDKKASMIISGSRDK-----TIKVWTIK 137 (319)
T ss_dssp TTSS-EEEEEETT------SEEEEEETTTTEEEEEE-ECC----SSCEEEEEECTTSCEEEEEETTS-----CEEEEETT
T ss_pred CCCC-EEEEEeCC------CEEEEEECCCCCeeEEE-ccC----CCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECC
Confidence 3444 45556543 45888999887643311 111 111112222 456777777653 46777876
Q ss_pred CCeEEeecccCCCCCCCCCceEEEE-------CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCC
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALV-------GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r 191 (520)
...-..+. +. ...-..+... ++.+++.||. ...+..+|+.+.+-...-. + ...
T Consensus 138 ~~~~~~~~--~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~-~--h~~- 197 (319)
T 3frx_A 138 GQCLATLL--GH---NDWVSQVRVVPNEKADDDSVTIISAGN-----------DKMVKAWNLNQFQIEADFI-G--HNS- 197 (319)
T ss_dssp SCEEEEEC--CC---SSCEEEEEECCC------CCEEEEEET-----------TSCEEEEETTTTEEEEEEC-C--CCS-
T ss_pred CCeEEEEe--cc---CCcEEEEEEccCCCCCCCccEEEEEeC-----------CCEEEEEECCcchhheeec-C--CCC-
Confidence 54332221 10 0000111111 1235555663 2346778877655332210 0 001
Q ss_pred cceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCc
Q 010011 192 DSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (520)
Q Consensus 192 ~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~ 228 (520)
.-.+++. .++++++.||.++ .+.+||+.+.+
T Consensus 198 ~v~~~~~sp~g~~l~s~~~dg------~i~iwd~~~~~ 229 (319)
T 3frx_A 198 NINTLTASPDGTLIASAGKDG------EIMLWNLAAKK 229 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTC------EEEEEETTTTE
T ss_pred cEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCc
Confidence 1112222 2677788887653 47888987765
No 248
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=56.82 E-value=1.8e+02 Score=31.53 Aligned_cols=168 Identities=8% Similarity=-0.010 Sum_probs=85.3
Q ss_pred EEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCC--eE--EeeeccCCCCCCCCcceEE-EECCEEEEEcCCCCCCCCCcE
Q 010011 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TW--SQPVIKGSPPTPRDSHSCT-TVGENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W--~~l~~~g~~P~~R~~hs~~-~~~~~iyv~GG~~~~~~~~~~ 112 (520)
...+++++|++..... ..+++|++|+.+. .+ ..+.. ... ...++.. ..++.||+..-.+ ......+
T Consensus 277 ~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~--~~~--~~~~s~~~~~g~~l~~~t~~~-~a~~~~L 347 (751)
T 2xe4_A 277 YKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRP--REK--GVRYDVQMHGTSHLVILTNEG-GAVNHKL 347 (751)
T ss_dssp EECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSC--CCT--TCCEEEEEETTTEEEEEECTT-TCTTCEE
T ss_pred EECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeec--CCC--CceEEEeeeeCCEEEEEeCCC-CCCCcEE
Confidence 3446677776655321 2467999998875 46 55431 111 1112222 2378888886543 1234589
Q ss_pred EEEECCC-CeEEe-ecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEc-------Ccce-EEEcc
Q 010011 113 HILDTSS-HTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT-------ETFV-WKRAT 182 (520)
Q Consensus 113 ~~yd~~t-~~W~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~-------~t~~-W~~v~ 182 (520)
+.+|+.+ ..|+. +-.. .....-......++.|++..-. .-...++++|+ .+.. .+.+.
T Consensus 348 ~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~---------~g~~~l~~~dl~~~~~~~~~g~~~~~l~ 415 (751)
T 2xe4_A 348 LIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRR---------AGLTRIWTMMADSQDGVFKAGTGLREVV 415 (751)
T ss_dssp EEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEE---------TTEEEEEEEECCTTTSCCCTTTCCEECC
T ss_pred EEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEe---------CCEEEEEEEecccccccccCCccceEEC
Confidence 9999876 67865 3211 1111112233345666665431 11467888886 3333 44442
Q ss_pred cCCCCCCCCcceeEE-----eeC-CEE-EEEecCCCCCcccCceEEEECCCCcEEEeeC
Q 010011 183 TSGNPPSARDSHTCS-----SWK-NKI-IVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (520)
Q Consensus 183 ~~~~~p~~r~~h~~~-----~~~-~~l-yv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~ 234 (520)
.|...+..... ..+ +.+ |.+.+.. ....++.||+.+.+.+.+..
T Consensus 416 ----l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~----~P~~~~~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 416 ----MEEPIFTVHLVESQMLEYEEPTFRMEYSSLA----TPNTWFDVSPQDHSRTAVKV 466 (751)
T ss_dssp ----CCCSSCEEEECGGGCCCTTCSCEEEEEEETT----EEEEEEEECTTTCCEEEEEE
T ss_pred ----CCCceeEEEeccCcccCCCCCEEEEEEeCCC----CCCEEEEEECCCCcEEEEec
Confidence 22221111110 112 233 3333321 23568899998888777764
No 249
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=55.81 E-value=82 Score=33.72 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=74.4
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCCC-eEEeecccC---CCCCCCCCceEEE-ECCEEEEEeCCCCCCCCCCcc
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSH-TWISPSVRG---EGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEV 163 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~g---~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~ 163 (520)
+++...+++|+|=|. ..|+++.... ......+.. .+|. ....+... .++++|+|=|
T Consensus 448 Ait~~rg~~yfFKg~-------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG----------- 508 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR-------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG----------- 508 (631)
T ss_dssp EEEECSSSEEEECSS-------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-----------
T ss_pred eeEecCCcEEEEcCC-------EEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-----------
Confidence 445567889999763 5777765442 221111111 1232 12222222 2578999977
Q ss_pred eeceeEEEEcCcc---eEEEcccCCCCCC-CCcceeEE-eeCCEEEEEecCCCCCcccCceEEEECCCCcEEE-----ee
Q 010011 164 YYNDLYILNTETF---VWKRATTSGNPPS-ARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LN 233 (520)
Q Consensus 164 ~~~~v~~~d~~t~---~W~~v~~~~~~p~-~r~~h~~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----~~ 233 (520)
+..|+|+..+- -=+.+...+-+.. .+...+.. ..++++|+|-| +..|+||..+.+-.. +.
T Consensus 509 --~~yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG--------~~ywryd~~~~~vd~gYPk~i~ 578 (631)
T 1ck7_A 509 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPKLIA 578 (631)
T ss_dssp --TEEEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEET--------TEEEEEETTTTEECTTCCEETT
T ss_pred --CEEEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEEC--------CEEEEEcCCcccccCCCCcchH
Confidence 45788875321 0122322121111 12222222 13689999976 358899977653211 11
Q ss_pred CCCCCCCCCceeEEEEEC--CEEEEEecccCCCCccCcEEEEecCCC
Q 010011 234 TSGMVLSPRAGHSTVAFG--KNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (520)
Q Consensus 234 ~~~~~p~~R~~hs~~~~~--~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (520)
. .-+..+..-.++.... +++|+|-|.. .|+||..+.
T Consensus 579 ~-~w~G~p~~iDAAf~~~~~g~~YFFkG~~--------Ywr~d~~~~ 616 (631)
T 1ck7_A 579 D-AWNAIPDNLDAVVDLQGGGHSYFFKGAY--------YLKLENQSL 616 (631)
T ss_dssp T-SCSSCCTTCCEEECCTTSCBCEEEETTE--------EECCBTTBT
T ss_pred h-hcCCCCCCCcEeEEEcCCCeEEEEECCE--------EEEEeCccc
Confidence 0 0011122223344433 6888888743 677776554
No 250
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=55.48 E-value=1.4e+02 Score=29.40 Aligned_cols=108 Identities=8% Similarity=0.066 Sum_probs=59.1
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCe--E-EeeeccCCCCCC-CCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEE
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQT--W-SQPVIKGSPPTP-RDSHSCTTV--GENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W-~~l~~~g~~P~~-R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
++++|+|=| +.+|+|+..... + +.+...| +|.. ..--++... ++++|+|-| +..|+||
T Consensus 236 ~g~~~fFkg--------~~yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd 299 (365)
T 3ba0_A 236 RNQVFLFKD--------DKYWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYD 299 (365)
T ss_dssp GTEEEEEET--------TEEEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEE
T ss_pred CCEEEEEeC--------CEEEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEe
Confidence 457888866 457787643211 1 1121111 2321 122233333 579999976 4789999
Q ss_pred CCCCeEEe-----ecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEE
Q 010011 117 TSSHTWIS-----PSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (520)
Q Consensus 117 ~~t~~W~~-----~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~ 180 (520)
..+.+-.. +.. +=+..+..--++... ++++|+|=| +..|+||..+.+-..
T Consensus 300 ~~~~~v~~gyPk~I~~-~f~g~p~~iDaA~~~~~g~~YfFkg-------------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 300 ERRQMMDPGYPKLITK-NFQGIGPKIDAVFYSKNKYYYFFQG-------------SNQFEYDFLLQRITK 355 (365)
T ss_dssp TTTTEECSSCCCCHHH-HSTTCCSSCSEEEEETTTEEEEEET-------------TEEEEEETTTTEEEE
T ss_pred CCcceecCCCCcchhh-cCCCCCCccceeeEecCCcEEEEeC-------------CEEEEEECCccEEec
Confidence 87765321 100 001112223344444 789999988 468999988776554
No 251
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=55.31 E-value=1.1e+02 Score=27.10 Aligned_cols=152 Identities=9% Similarity=0.091 Sum_probs=78.7
Q ss_pred eEEEECCEEEEEcCCCCCCCCCcEEEEECCC---CeEEeeccc-CCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcce
Q 010011 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSS---HTWISPSVR-GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY 164 (520)
Q Consensus 89 s~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t---~~W~~~~~~-g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~ 164 (520)
+++.+.+++|+|-| +.+|+++... .-=..+... ..+|. ....+....++++|+|-|
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg------------ 69 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG------------ 69 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET------------
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC------------
Confidence 34567899999987 3577776331 000111111 02343 222222224678999988
Q ss_pred eceeEEEEcCcce---EEEcccCC-CCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEE-----eeC
Q 010011 165 YNDLYILNTETFV---WKRATTSG-NPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LNT 234 (520)
Q Consensus 165 ~~~v~~~d~~t~~---W~~v~~~~-~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----~~~ 234 (520)
+..|+|+..+.. =+.+.... .+|......+... .++++|+|-| +..|+||..+++-.. +..
T Consensus 70 -~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG--------~~yw~yd~~~~~v~~gyPk~i~~ 140 (196)
T 3c7x_A 70 -DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG--------NKYYRFNEELRAVDSEYPKNIKV 140 (196)
T ss_dssp -TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECTTCSEEGGG
T ss_pred -CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC--------CEEEEEeCCcccccCCCCccHHH
Confidence 456888754211 11232221 1332333333332 2689999966 357899987654221 111
Q ss_pred CCCCCCCCceeEEEEE-CC-EEEEEecccCCCCccCcEEEEecCCCc
Q 010011 235 SGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 235 ~~~~p~~R~~hs~~~~-~~-~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
- +..|..-.++... ++ ++|+|-|. ..|+||..+.+
T Consensus 141 ~--~gip~~idaAf~~~~~~~~YfFkg~--------~y~r~d~~~~~ 177 (196)
T 3c7x_A 141 W--EGIPESPRGSFMGSDEVFTYFYKGN--------KYWKFNNQKLK 177 (196)
T ss_dssp S--BTCCSSCSEEEECTTSSEEEEEETT--------EEEEEETTTTE
T ss_pred C--CCcCCCcceeEEecCCCEEEEEECC--------EEEEEECCcce
Confidence 0 0112222334444 34 89999874 38999987764
No 252
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=55.10 E-value=1.3e+02 Score=27.58 Aligned_cols=29 Identities=3% Similarity=0.008 Sum_probs=18.9
Q ss_pred CCEEEEEecccCCCCccCcEEEEecCCC-cEEEeee
Q 010011 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTKVIT 285 (520)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~-~W~~l~~ 285 (520)
++++++.||.+. .+.+||+++. .|..+..
T Consensus 317 ~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDDG------KVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETTS------CEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCCC------cEEEEecCcCcchhheee
Confidence 456677777542 3888888764 6766654
No 253
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=54.82 E-value=1.1e+02 Score=27.31 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeE---EeeeccC-CCCCCCCcceEEE-ECCEEEEEcCCCCCCCCCcEEEEE
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW---SQPVIKG-SPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILD 116 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W---~~l~~~g-~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~~~yd 116 (520)
.++++|+|-| +.+|+|+..+... +.+...+ .+|......+... .++++|+|-| +..|+||
T Consensus 60 ~~g~~yfFkg--------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd 124 (196)
T 3c7x_A 60 KDGKFVFFKG--------DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFN 124 (196)
T ss_dssp TTSCEEEEET--------TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEE
T ss_pred CCCcEEEecC--------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEe
Confidence 3456899866 5589998542110 1121111 1342222222222 2689999977 4689999
Q ss_pred CCCCeEEe-----ecccCCCCCCCCCceEEEE-CC-EEEEEeCCCCCCCCCCcceeceeEEEEcCcce
Q 010011 117 TSSHTWIS-----PSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (520)
Q Consensus 117 ~~t~~W~~-----~~~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~ 177 (520)
..+++-.. +..-..+| ..-.++... ++ ++|+|-| +..|+||..+.+
T Consensus 125 ~~~~~v~~gyPk~i~~~~gip--~~idaAf~~~~~~~~YfFkg-------------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 125 EELRAVDSEYPKNIKVWEGIP--ESPRGSFMGSDEVFTYFYKG-------------NKYWKFNNQKLK 177 (196)
T ss_dssp TTTTEECTTCSEEGGGSBTCC--SSCSEEEECTTSSEEEEEET-------------TEEEEEETTTTE
T ss_pred CCcccccCCCCccHHHCCCcC--CCcceeEEecCCCEEEEEEC-------------CEEEEEECCcce
Confidence 88765421 11100122 222333333 34 8999988 457899987654
No 254
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=54.81 E-value=1.6e+02 Score=31.86 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=54.0
Q ss_pred eceeEEEEcCcc--eE--EEcccCCCCCCCCcceeEE-eeCCEEEEEecCCCCCcccCceEEEECCC-CcEEE-eeCCCC
Q 010011 165 YNDLYILNTETF--VW--KRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKE-LNTSGM 237 (520)
Q Consensus 165 ~~~v~~~d~~t~--~W--~~v~~~~~~p~~r~~h~~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W~~-~~~~~~ 237 (520)
.++++++|+.+. .+ +.+.... ..+ .+... ..++.||+..-.+.. ....++.+|..+ ..|+. +-...
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~--~~~--~~s~~~~~g~~l~~~t~~~~a--~~~~L~~~d~~~~~~~~~~li~~~- 366 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE--KGV--RYDVQMHGTSHLVILTNEGGA--VNHKLLIAPRGQPSDWSHVLVDHS- 366 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC--TTC--CEEEEEETTTEEEEEECTTTC--TTCEEEEEETTSTTCCCCEEECCC-
T ss_pred CceEEEEECCCCCCCceeEEeecCC--CCc--eEEEeeeeCCEEEEEeCCCCC--CCcEEEEEcCCCcccceeeEECCC-
Confidence 468999999764 45 5554211 111 12222 237788888654411 234789999876 67876 54311
Q ss_pred CCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEec
Q 010011 238 VLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 238 ~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
...........++.|++..-... ...++++|+
T Consensus 367 --~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl 398 (751)
T 2xe4_A 367 --EDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMA 398 (751)
T ss_dssp --SSEEEEEEEECSSEEEEEEEETT----EEEEEEEEC
T ss_pred --CCcEEEEEEEECCEEEEEEEeCC----EEEEEEEec
Confidence 11111223344677776654322 356899996
No 255
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=54.63 E-value=1.1e+02 Score=32.37 Aligned_cols=204 Identities=16% Similarity=0.203 Sum_probs=107.9
Q ss_pred CCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE----CCEEEEEcCCC------C------
Q 010011 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV----GENLYVFGGTD------G------ 105 (520)
Q Consensus 42 ~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~iyv~GG~~------~------ 105 (520)
+|+++||-- . ..+.+.++|+.+.+-.++- .+|....-|+++.. ++.+|+-+-.. +
T Consensus 100 DG~~lfVnd---~---~~~rVavIdl~t~~~~~ii---~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMND---K---ANTRVARVRCDVMKCDAIL---EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEE---T---TTTEEEEEETTTTEEEEEE---ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEEc---C---CCCEEEEEECCCceEeeEE---eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 467888832 2 2356999999998866643 46665667777753 56787775331 1
Q ss_pred CCCCCcEEEEECCCCe--EEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCC-------------------------
Q 010011 106 MNPLRDLHILDTSSHT--WISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSS------------------------- 157 (520)
Q Consensus 106 ~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~------------------------- 157 (520)
.+..+.+-+.|..+.+ |+- .+.+. | .+..+.. ++.+|+----++..
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI-~Vgg~-p----d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQV-LVSGN-L----DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEE-EESSC-C----CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred cccCceEEEEECCCCeEEEEE-EeCCC-c----cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 1233578889999876 442 22221 1 1122222 23344432211000
Q ss_pred -CCCCcceeceeEEEEcCcceEEE-cccCCCCCCCCcceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCc-E---
Q 010011 158 -NTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLT-W--- 229 (520)
Q Consensus 158 -~~~~~~~~~~v~~~d~~t~~W~~-v~~~~~~p~~r~~h~~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~-W--- 229 (520)
......+.+.+-++|..+.+.+. +. ..|.+..-|++..- + ..+|+.+. ..+.+.+||.++.+ +
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~---~Ipvg~~PhGv~~sPDGk~v~V~~~------~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTR---YIPIANNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEE---EEEEESSCCCEEECTTSSEEEEECT------TSSBEEEEEGGGHHHHHHS
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEE---EEecCCCceEEEEcCCCCEEEEeCC------CCCeEEEEECccccccccc
Confidence 00012334678888888733211 11 12333444665554 4 45666554 34678999988642 1
Q ss_pred ------EEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCC
Q 010011 230 ------KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 230 ------~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
..+.. ...-.+-.|.+..-++.+|+.-..+ +++.+||+++
T Consensus 316 ~l~~~~~v~~~--v~vG~gP~h~aF~~dG~aY~t~~ld------sqV~kwdi~~ 361 (595)
T 1fwx_A 316 NADPRSAVVAE--PELGLGPLHTAFDGRGNAYTSLFLD------SQVVKWNIED 361 (595)
T ss_dssp CCCGGGGEEEC--CBCCSCEEEEEECTTSEEEEEETTT------TEEEEEEHHH
T ss_pred ccCcccceEEE--cCCCCCcceEEECCCCeEEEEEecC------CcEEEEEhhH
Confidence 01111 0122344555555556777765543 5588888877
No 256
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=53.96 E-value=1.9e+02 Score=29.35 Aligned_cols=149 Identities=9% Similarity=0.009 Sum_probs=77.8
Q ss_pred CCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccC---CCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEEC
Q 010011 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKG---SPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDT 117 (520)
Q Consensus 43 g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g---~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 117 (520)
++.+|+|=| +.+|+++.....+....+.. .+|.. --++... ++++|+|=| +.+|+|+.
T Consensus 272 ~ge~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg-------~~~W~~~~ 334 (450)
T 1su3_A 272 RGEVMFFKD--------RFYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG-------NKYWAVQG 334 (450)
T ss_dssp TTEEEEEET--------TEEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET-------TEEEEEET
T ss_pred CCeEEEEeC--------CEEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeC-------CEEEEecC
Confidence 457999866 34677765544443222211 23322 1222332 689999976 36788874
Q ss_pred CCCe--E-Eeec-ccCCCCCCCCCc-eEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE-----Eccc-C
Q 010011 118 SSHT--W-ISPS-VRGEGPEAREGH-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-----RATT-S 184 (520)
Q Consensus 118 ~t~~--W-~~~~-~~g~~p~~r~~h-s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~-----~v~~-~ 184 (520)
.+-. + ..+. ..| .|.....- ++... ++++|+|-| +..|+||..+.+-. .+.. -
T Consensus 335 ~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG-------------~~yw~yd~~~~~~~~gYPk~I~~~f 400 (450)
T 1su3_A 335 QNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------------NKYWRYDEYKRSMDPGYPKMIAHDF 400 (450)
T ss_dssp TEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------------TEEEEEETTTTEECSSCSEEHHHHS
T ss_pred CcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC-------------CEEEEEeCCCccccCCCCcchhhcC
Confidence 3210 0 1111 111 22211122 33333 479999988 56889987654322 1211 1
Q ss_pred CCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 010011 185 GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 185 ~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
...|. .--+++..++++|+|-| +..|+||..+.+-...
T Consensus 401 pgip~--~iDAA~~~~g~~YFFkg--------~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 401 PGIGH--KVDAVFMKDGFFYFFHG--------TRQYKFDPKTKRILTL 438 (450)
T ss_dssp TTSCS--CCSEEEEETTEEEEEET--------TEEEEEETTTTEEEEE
T ss_pred CCCCC--CccEEEEcCCeEEEEeC--------CEEEEEECCcceEecc
Confidence 11222 22344456899999976 4588999887765543
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=52.91 E-value=1.5e+02 Score=27.69 Aligned_cols=207 Identities=10% Similarity=0.043 Sum_probs=99.8
Q ss_pred CCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCC
Q 010011 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMN 107 (520)
Q Consensus 29 P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~ 107 (520)
|.+...+..+.-.++ .||+.-- ....+++||+....-.... . + ..-++++.. ++++|+......
T Consensus 29 p~~~~pegia~~~~g-~lyv~d~------~~~~I~~~d~~g~~~~~~~-~---~--~~p~gia~~~dG~l~vad~~~~-- 93 (306)
T 2p4o_A 29 PVNTFLENLASAPDG-TIFVTNH------EVGEIVSITPDGNQQIHAT-V---E--GKVSGLAFTSNGDLVATGWNAD-- 93 (306)
T ss_dssp CTTCCEEEEEECTTS-CEEEEET------TTTEEEEECTTCCEEEEEE-C---S--SEEEEEEECTTSCEEEEEECTT--
T ss_pred CCCCCcceEEECCCC-CEEEEeC------CCCeEEEECCCCceEEEEe-C---C--CCceeEEEcCCCcEEEEeccCC--
Confidence 333444444443444 4887642 1246899998765322222 1 1 122333333 567888753211
Q ss_pred CCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce---EEEccc
Q 010011 108 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATT 183 (520)
Q Consensus 108 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~---W~~v~~ 183 (520)
...+++||+.+.+.+.+.. .+..+.....+.. ++.+|+.-- ....+|++|+.+.. |..-..
T Consensus 94 -~~~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~-----------~~g~i~~~d~~~~~~~v~~~~~~ 158 (306)
T 2p4o_A 94 -SIPVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS-----------YRGAIWLIDVVQPSGSIWLEHPM 158 (306)
T ss_dssp -SCEEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET-----------TTTEEEEEETTTTEEEEEEECGG
T ss_pred -cceEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC-----------CCCeEEEEeCCCCcEeEEEECCc
Confidence 1248889988888765542 2333443344333 456777532 12468899987542 211110
Q ss_pred C---CCCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCC-CcE---EEeeCCCCCCCCCceeEEEEECCEEEE
Q 010011 184 S---GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTW---KELNTSGMVLSPRAGHSTVAFGKNLFV 256 (520)
Q Consensus 184 ~---~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W---~~~~~~~~~p~~R~~hs~~~~~~~iyv 256 (520)
. .....-.....+...++.||+.-- ..+.+++||+.. .+. +.+.. ...| ..-++.-++++||
T Consensus 159 ~~~~~~~~~~~~pngis~dg~~lyv~d~------~~~~I~~~~~~~~g~~~~~~~~~~---~~~P--~gi~vd~dG~l~v 227 (306)
T 2p4o_A 159 LARSNSESVFPAANGLKRFGNFLYVSNT------EKMLLLRIPVDSTDKPGEPEIFVE---QTNI--DDFAFDVEGNLYG 227 (306)
T ss_dssp GSCSSTTCCSCSEEEEEEETTEEEEEET------TTTEEEEEEBCTTSCBCCCEEEEE---SCCC--SSEEEBTTCCEEE
T ss_pred cccccccCCCCcCCCcCcCCCEEEEEeC------CCCEEEEEEeCCCCCCCccEEEec---cCCC--CCeEECCCCCEEE
Confidence 0 000011112223333567888642 235689999764 221 11111 1111 1112223567877
Q ss_pred EecccCCCCccCcEEEEecCCCcEEEe
Q 010011 257 FGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 257 ~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
.-.. .+.|.+||++ .+...+
T Consensus 228 a~~~------~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 228 ATHI------YNSVVRIAPD-RSTTII 247 (306)
T ss_dssp ECBT------TCCEEEECTT-CCEEEE
T ss_pred EeCC------CCeEEEECCC-CCEEEE
Confidence 6542 2458999986 444433
No 258
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=51.97 E-value=1.8e+02 Score=28.31 Aligned_cols=153 Identities=13% Similarity=0.013 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d 172 (520)
++.+++.|+.+ ..+.+||+.+.+-...- .+ .+....-.+++.. ++.+++.|+. ...+.+||
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~-~~-~~h~~~v~~~~~s~~~~~l~s~~~-----------dg~i~iwd 242 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQII-EN-SPRHGAVSSICIDEECCVLILGTT-----------RGIIDIWD 242 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEE-EC-CGGGCCEEEEEECTTSCEEEEEET-----------TSCEEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEE-cc-CCCCCceEEEEECCCCCEEEEEcC-----------CCeEEEEE
Confidence 46777777654 46889999876643211 01 0011111122222 4567777773 24578889
Q ss_pred cCcceEEEcccCCCCCCCCcceeEEe-----eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeC-CCC-C------C
Q 010011 173 TETFVWKRATTSGNPPSARDSHTCSS-----WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT-SGM-V------L 239 (520)
Q Consensus 173 ~~t~~W~~v~~~~~~p~~r~~h~~~~-----~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~-~~~-~------p 239 (520)
+.+.+....-. .+....-.+++. .++.+++.|+.++ .+.+||..+.+-...-. ... . |
T Consensus 243 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 243 IRFNVLIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSKT------FLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp TTTTEEEEEEB---CTTCEEEEEEEECTTTCTTEEEEEEESTTE------EEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred cCCccEEEEEe---cCCCCceEEEEeccccCCCccEEEEEcCCC------cEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 88765433211 010001111111 1345666665432 48888887665332211 000 0 0
Q ss_pred --------------CCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCc
Q 010011 240 --------------SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (520)
Q Consensus 240 --------------~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (520)
....-.+++..++++++.||.+. .|.+||+.+.+
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~~wd~~~~~ 361 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATS------SIVMFSLNELS 361 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGT------EEEEEETTCGG
T ss_pred cccccccceecccccCCceEEEEECCceEEEecCCCC------eEEEEECCCcc
Confidence 00111223444778888888653 48888887765
No 259
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=51.70 E-value=44 Score=35.69 Aligned_cols=102 Identities=8% Similarity=-0.068 Sum_probs=50.7
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCC----CCCCcEEEEECCCCeE---EeecccCC
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGM----NPLRDLHILDTSSHTW---ISPSVRGE 130 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~----~~~~~~~~yd~~t~~W---~~~~~~g~ 130 (520)
..++++|..+++-..+....... . .......+ +++..+++..... .....++++|+.+.+. ..+.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---- 109 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMK-S-VNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---- 109 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHH-T-TTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----
T ss_pred CCEEEEEcCCCcEEEEEcccccc-c-cceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----
Confidence 36899999998877653110000 0 01112222 4554444432110 1125799999998876 3321
Q ss_pred CCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc
Q 010011 131 GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (520)
Q Consensus 131 ~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~ 182 (520)
......+..-+++.++++. .++++++|+.+..-..+.
T Consensus 110 ---~~~~~~~~SPDG~~la~~~------------~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 110 ---RPIQYLCWSPVGSKLAYVY------------QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp ---SSBCCEEECSSTTCEEEEE------------TTEEEEESSTTSCCEECC
T ss_pred ---cccccceECCCCCEEEEEE------------CCeEEEEeCCCCCcEEEe
Confidence 1112222233454444432 136888888776655554
No 260
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=49.34 E-value=1.7e+02 Score=27.30 Aligned_cols=181 Identities=12% Similarity=-0.019 Sum_probs=86.3
Q ss_pred CeEEEEECCCCeE-EeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCC---C-CCcEEEEECCCCeEEeecccCCCCCC
Q 010011 60 NQVHVFDTVNQTW-SQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMN---P-LRDLHILDTSSHTWISPSVRGEGPEA 134 (520)
Q Consensus 60 ~~~~~yd~~t~~W-~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~---~-~~~~~~yd~~t~~W~~~~~~g~~p~~ 134 (520)
..++++|+.+++. ..+.. + .....+...+.+++.+..+... . ..++|.+| +.+++.+...
T Consensus 152 ~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~------ 216 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK------ 216 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE------
T ss_pred ceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC------
Confidence 5699999999887 66542 2 2223333333355555443221 1 45789999 7777665421
Q ss_pred CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCCCCc
Q 010011 135 REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDY 214 (520)
Q Consensus 135 r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~~~~ 214 (520)
........+++.+++++.... ........++++| +.++..+... . .........+.+.+|+.+..++
T Consensus 217 -~~~~~~spdg~~l~~~~~~~~---~~~~~~~~l~~~d--~~~~~~l~~~---~-~~~~~~~~~~sdg~~~~~~~~~--- 283 (347)
T 2gop_A 217 -VSFYAVDSDGERILLYGKPEK---KYMSEHNKLYIYD--GKEVMGILDE---V-DRGVGQAKIKDGKVYFTLFEEG--- 283 (347)
T ss_dssp -ESEEEEEECSSCEEEEECCSS---SCCCSSCEEEEEC--SSCEEESSTT---C-CSEEEEEEEETTEEEEEEEETT---
T ss_pred -cceeeECCCCCEEEEEEcccc---CCccccceEEEEC--CCceEecccc---C-CcccCCccEEcCcEEEEEecCC---
Confidence 112222445554444332110 0111245788898 6666666421 1 1111111222244666655443
Q ss_pred ccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEEEee
Q 010011 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 215 ~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
...+| ++ +.+...+.. ....-.+..... .+++.+.... ....+|.+| ++..++.
T Consensus 284 -~~~l~-~~--~g~~~~~~~-----~~~~v~~~~~s~-~~~~~~~~~~---~~~~l~~~~---g~~~~lt 337 (347)
T 2gop_A 284 -SVNLY-IW--DGEIKPIAK-----GRHWIMGFDVDE-IVVYLKETAT---RLRELFTWD---GEEKQLT 337 (347)
T ss_dssp -EEEEE-EE--SSSEEEEEC-----SSSEEEEEEESS-SEEEEEECSS---SCCEEEEES---SSEEECC
T ss_pred -cEEEE-Ec--CCceEEEec-----CCCeEEeeeeeC-cEEEEEcCCC---ChHHheEeC---CcEEEec
Confidence 23577 77 345554432 111112222334 5555544322 123688887 4455544
No 261
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=47.37 E-value=2.2e+02 Score=28.19 Aligned_cols=74 Identities=19% Similarity=0.056 Sum_probs=43.2
Q ss_pred eCCEEEEEec---CCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE-EECC--EEEEEecccCCCCccCcEEE
Q 010011 199 WKNKIIVIGG---EDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGK--NLFVFGGFTDSQNLYDDLYM 272 (520)
Q Consensus 199 ~~~~lyv~GG---~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~-~~~~--~iyv~GG~~~~~~~~~dv~~ 272 (520)
-++++|+.-+ .......-+.++++|+++.+-..-- +.+..-.++. .-++ .+|+.-+. .+++.+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i-----~vg~~~~~lavs~D~~~~ly~tn~~------~~~VsV 358 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----EMGHEIDSINVSQDEKPLLYALSTG------DKTLYI 358 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----EEEEEECEEEECSSSSCEEEEEETT------TTEEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE-----ECCCCcceEEECCCCCeEEEEEcCC------CCeEEE
Confidence 4788999632 2111224578999999998765432 2222222333 3344 36665442 356999
Q ss_pred EecCCCcEEEe
Q 010011 273 IDVDSGLWTKV 283 (520)
Q Consensus 273 yd~~~~~W~~l 283 (520)
||..+.+-..-
T Consensus 359 iD~~t~k~~~~ 369 (386)
T 3sjl_D 359 HDAESGEELRS 369 (386)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCcEEEE
Confidence 99998875443
No 262
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=47.24 E-value=2.3e+02 Score=30.23 Aligned_cols=153 Identities=13% Similarity=0.127 Sum_probs=73.2
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCC-eEEeeecc---CCCCCCCCcceEEE-ECCEEEEEcCCCCCCCC
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ-TWSQPVIK---GSPPTPRDSHSCTT-VGENLYVFGGTDGMNPL 109 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~-~W~~l~~~---g~~P~~R~~hs~~~-~~~~iyv~GG~~~~~~~ 109 (520)
.-++.... +.+|+|=| +.+|+++.... ......+. +.+|.. ...+... .++++|+|=|
T Consensus 446 fDAit~~r-g~~yfFKg--------~~yWr~~~~~~~~~~P~~Is~~wp~LP~~-IDAA~~~~~~~k~yFFkG------- 508 (631)
T 1ck7_A 446 FDGIAQIR-GEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPEK-IDAVYEAPQEEKAVFFAG------- 508 (631)
T ss_dssp CSEEEECS-SSEEEECS--------SEEEEESCTTSCCEEEEEGGGTCTTSCSS-CSBCCEETTTTEEEEEET-------
T ss_pred cceeEecC-CcEEEEcC--------CEEEEEcCCCCCCCCceeccccCCCCCcc-ceEEEEECCCCEEEEEec-------
Confidence 34444444 45899866 45788775542 22221111 123321 1222211 2678999976
Q ss_pred CcEEEEECCCC--eE-EeecccCCCCCC--CCCceEE-EECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE----
Q 010011 110 RDLHILDTSSH--TW-ISPSVRGEGPEA--REGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK---- 179 (520)
Q Consensus 110 ~~~~~yd~~t~--~W-~~~~~~g~~p~~--r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~---- 179 (520)
+..|+|+..+- .+ +.+...| .|.. .-..+.. ..++++|+|-| +..|+||..+.+-.
T Consensus 509 ~~yWry~~~~l~~GYPk~Is~~G-~P~~~~~IDAAf~~~~~gktYFFkG-------------~~ywryd~~~~~vd~gYP 574 (631)
T 1ck7_A 509 NEYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------------DKFWRYNEVKKKMDPGFP 574 (631)
T ss_dssp TEEEEEETTEECTTCCEEGGGGT-CCTTCCCCCBCCCCTTTCEEEEEET-------------TEEEEEETTTTEECTTCC
T ss_pred CEEEEECCCccccCCCccchhcC-CCCCCCcceeEEEecCCCeEEEEEC-------------CEEEEEcCCcccccCCCC
Confidence 46899985310 01 1121111 2221 1121111 13578999988 46889997655321
Q ss_pred -EcccCCCCCCCCcceeEEeeC--CEEEEEecCCCCCcccCceEEEECCCC
Q 010011 180 -RATTSGNPPSARDSHTCSSWK--NKIIVIGGEDGHDYYLSDVHILDTDTL 227 (520)
Q Consensus 180 -~v~~~~~~p~~r~~h~~~~~~--~~lyv~GG~~~~~~~~~~i~~yd~~t~ 227 (520)
.+.. .-+..+..-.++...+ +++|+|-|. ..|+||..+.
T Consensus 575 k~i~~-~w~G~p~~iDAAf~~~~~g~~YFFkG~--------~Ywr~d~~~~ 616 (631)
T 1ck7_A 575 KLIAD-AWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSL 616 (631)
T ss_dssp EETTT-SCSSCCTTCCEEECCTTSCBCEEEETT--------EEECCBTTBT
T ss_pred cchHh-hcCCCCCCCcEeEEEcCCCeEEEEECC--------EEEEEeCccc
Confidence 1111 0111222223444443 788888763 3566666543
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=47.04 E-value=1.8e+02 Score=27.03 Aligned_cols=140 Identities=9% Similarity=0.030 Sum_probs=71.0
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCe---EEeecccC-CCCCCC
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT---WISPSVRG-EGPEAR 135 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~g-~~p~~r 135 (520)
.+++||..+++...+.. .+..+.....+.. ++.+|+.-- ....+|++|+.+.. |....... ..+...
T Consensus 96 ~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp EEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred eEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 48889988888776542 2334444444433 456777532 23479999988653 21111000 011111
Q ss_pred --CCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCc-ceE---EEcccCCCCCCCCcceeEEe-eCCEEEEEec
Q 010011 136 --EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVW---KRATTSGNPPSARDSHTCSS-WKNKIIVIGG 208 (520)
Q Consensus 136 --~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t-~~W---~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG 208 (520)
........++.||+.--. .+.+++|++.. .+. +.+.. ...+ ..+++ -+++||+.-.
T Consensus 168 ~~~pngis~dg~~lyv~d~~-----------~~~I~~~~~~~~g~~~~~~~~~~---~~~P---~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 168 FPAANGLKRFGNFLYVSNTE-----------KMLLLRIPVDSTDKPGEPEIFVE---QTNI---DDFAFDVEGNLYGATH 230 (306)
T ss_dssp SCSEEEEEEETTEEEEEETT-----------TTEEEEEEBCTTSCBCCCEEEEE---SCCC---SSEEEBTTCCEEEECB
T ss_pred CCcCCCcCcCCCEEEEEeCC-----------CCEEEEEEeCCCCCCCccEEEec---cCCC---CCeEECCCCCEEEEeC
Confidence 112233335678886431 36788998864 221 11110 1111 22333 3677888743
Q ss_pred CCCCCcccCceEEEECCCCcEEEe
Q 010011 209 EDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
. .+.+.+||+. .+...+
T Consensus 231 ~------~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 231 I------YNSVVRIAPD-RSTTII 247 (306)
T ss_dssp T------TCCEEEECTT-CCEEEE
T ss_pred C------CCeEEEECCC-CCEEEE
Confidence 2 3468899986 444443
No 264
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=45.78 E-value=2.2e+02 Score=27.55 Aligned_cols=22 Identities=14% Similarity=0.293 Sum_probs=15.9
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcE
Q 010011 202 KIIVIGGEDGHDYYLSDVHILDTDTLTW 229 (520)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W 229 (520)
.+++.|+.++ .+..||+.+...
T Consensus 240 ~~l~s~~~dg------~i~iwd~~~~~~ 261 (447)
T 3dw8_B 240 NTFVYSSSKG------TIRLCDMRASAL 261 (447)
T ss_dssp TEEEEEETTS------CEEEEETTTCSS
T ss_pred cEEEEEeCCC------eEEEEECcCCcc
Confidence 6888887653 488899877653
No 265
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=45.70 E-value=1.7e+02 Score=26.45 Aligned_cols=108 Identities=22% Similarity=0.328 Sum_probs=56.1
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeecc---CCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIK---GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~---g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~ 113 (520)
+++...++.+|+|=| +.+|+++.....+....+. +.+|.. --++...++++|+|=| +.+|
T Consensus 22 Ai~~~~~g~~yfFkg--------~~~Wr~~~~~~~~~p~~Is~~wpgLP~~--IDAA~~~~~~~yfFkG-------~~yw 84 (219)
T 1hxn_A 22 AMVSDNHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVY 84 (219)
T ss_dssp EEEECTTSCEEEEET--------TEEEESSSSSCTTCCEEGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEE
T ss_pred EEEECCCCcEEEEeC--------CEEEEEcCCCCCCCceEhhhhccCCCCC--ccEEEEECCcEEEecC-------CEEE
Confidence 344323446888866 3467766543222111111 123432 2233445899999976 4689
Q ss_pred EEECCC-CeE-----Eeecc-cCCCCCC--CCCceEEE-E--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCc
Q 010011 114 ILDTSS-HTW-----ISPSV-RGEGPEA--REGHSAAL-V--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 175 (520)
Q Consensus 114 ~yd~~t-~~W-----~~~~~-~g~~p~~--r~~hs~~~-~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t 175 (520)
+|+..+ .+- +.+.. .| +|.. ...--+++ . ++++|+|-| +..|+||..+
T Consensus 85 ~~~~~~~~~~~~gyPk~i~~~~G-~p~~~~~~~IDAA~~~~~~gk~yfFkG-------------~~ywr~d~~~ 144 (219)
T 1hxn_A 85 VFLTKGGYTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG-------------RRLWWLDLKS 144 (219)
T ss_dssp EEECSSSCEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET-------------TEEEEEEGGG
T ss_pred EEeCCCCceecCCCCeehhhccC-CCCcccccccceeEEecCCCEEEEEeC-------------CEEEEEeCCC
Confidence 998753 221 11211 11 3332 11222333 2 478999988 4578999765
No 266
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=45.35 E-value=2.8e+02 Score=28.73 Aligned_cols=194 Identities=12% Similarity=0.153 Sum_probs=93.4
Q ss_pred CEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 010011 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (520)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (520)
...++.|+.+ ..+.+||..+.+....- .+. ...-.++.+ ++++++.||.++ .+.++|..+.+
T Consensus 160 ~~~l~s~s~D------~~v~lwd~~~~~~~~~l-~~H----~~~V~~v~fspdg~~las~s~D~-----~i~lwd~~~g~ 223 (611)
T 1nr0_A 160 PFRIISGSDD------NTVAIFEGPPFKFKSTF-GEH----TKFVHSVRYNPDGSLFASTGGDG-----TIVLYNGVDGT 223 (611)
T ss_dssp SCEEEEEETT------SCEEEEETTTBEEEEEE-CCC----SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCC
T ss_pred CeEEEEEeCC------CeEEEEECCCCeEeeee-ccc----cCceEEEEECCCCCEEEEEECCC-----cEEEEECCCCc
Confidence 3345556543 34677887665543311 111 111112222 566777777653 48888887766
Q ss_pred EEeecccCCCCCCCCCc-----eEEEE-CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCccee
Q 010011 122 WISPSVRGEGPEAREGH-----SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (520)
Q Consensus 122 W~~~~~~g~~p~~r~~h-----s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~ 195 (520)
....-..... ...+| +++.. +++.++.|+. ...+.++|+.+.+....-..+. .......
T Consensus 224 ~~~~~~~~~~--~~~~h~~~V~~v~~spdg~~l~s~s~-----------D~~v~lWd~~~~~~~~~~~~~~--~~~~~~~ 288 (611)
T 1nr0_A 224 KTGVFEDDSL--KNVAHSGSVFGLTWSPDGTKIASASA-----------DKTIKIWNVATLKVEKTIPVGT--RIEDQQL 288 (611)
T ss_dssp EEEECBCTTS--SSCSSSSCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCS--SGGGCEE
T ss_pred Eeeeeccccc--cccccCCCEEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCceeeeecCCC--CccceeE
Confidence 4321100000 01122 22222 4566777773 2457788888776544321111 0111122
Q ss_pred EEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEec
Q 010011 196 CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 196 ~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
.+..++..++.++.++ .+..+|+.+..-..... + ........+..-+++.++.|+.+. .+.+||+
T Consensus 289 ~~~~~~~~l~s~s~d~------~i~~~~~~~~~~~~~~~-g--h~~~v~~l~~spdg~~l~s~s~D~------~v~~Wd~ 353 (611)
T 1nr0_A 289 GIIWTKQALVSISANG------FINFVNPELGSIDQVRY-G--HNKAITALSSSADGKTLFSADAEG------HINSWDI 353 (611)
T ss_dssp EEEECSSCEEEEETTC------CEEEEETTTTEEEEEEC-C--CSSCEEEEEECTTSSEEEEEETTS------CEEEEET
T ss_pred EEEEcCCEEEEEeCCC------cEEEEeCCCCCcceEEc-C--CCCCEEEEEEeCCCCEEEEEeCCC------cEEEEEC
Confidence 2333556666666443 36778887765322211 0 111111111222456677777543 4889999
Q ss_pred CCCcEEEe
Q 010011 276 DSGLWTKV 283 (520)
Q Consensus 276 ~~~~W~~l 283 (520)
.+.....+
T Consensus 354 ~~~~~~~~ 361 (611)
T 1nr0_A 354 STGISNRV 361 (611)
T ss_dssp TTCCEEEC
T ss_pred CCCceeee
Confidence 88765443
No 267
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=43.94 E-value=1.9e+02 Score=26.28 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=41.7
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcE
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~ 112 (520)
..++....++ ++..| .+ +.+.++|..+++..++- ....+ ...-.++.+ +++.++.|+.+ ..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D------~tV~iWd~~tg~~~~~~-~~~~~--~~~V~~v~~~~~~~~l~sgs~D-----g~v 91 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LD------NSVYLWSASSGDILQLL-QMEQP--GEYISSVAWIKEGNYLAVGTSS-----AEV 91 (318)
T ss_dssp CBCEEECTTS-EEEEE-ET------TEEEEEETTTCCEEEEE-ECCST--TCCEEEEEECTTSSEEEEEETT-----SEE
T ss_pred ceEEEECCCC-EEEEE-eC------CEEEEEECCCCCEEEEE-EecCC--CCeEEEEEECCCCCEEEEEECC-----CcE
Confidence 3455666566 54554 22 45899999998766532 11111 111122222 56677778765 358
Q ss_pred EEEECCCCeEE
Q 010011 113 HILDTSSHTWI 123 (520)
Q Consensus 113 ~~yd~~t~~W~ 123 (520)
.++|..+.+-.
T Consensus 92 ~iw~~~~~~~~ 102 (318)
T 4ggc_A 92 QLWDVQQQKRL 102 (318)
T ss_dssp EEEETTTTEEE
T ss_pred EEeecCCceeE
Confidence 88899887653
No 268
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=43.65 E-value=1.8e+02 Score=26.15 Aligned_cols=153 Identities=8% Similarity=-0.022 Sum_probs=82.5
Q ss_pred cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 010011 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (520)
Q Consensus 41 ~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 118 (520)
..++.||+.-.. .+.++++|+....-..+... ... .-..++.. +++||+.... .....++++++.
T Consensus 88 ~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~-~~~---~P~~i~vd~~~g~lyv~~~~---~~~~~I~~~~~d 154 (267)
T 1npe_A 88 HLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLFDT-GLV---NPRGIVTDPVRGNLYWTDWN---RDNPKIETSHMD 154 (267)
T ss_dssp TTTTEEEEEETT------TTEEEEEETTSCSCEEEECS-SCS---SEEEEEEETTTTEEEEEECC---SSSCEEEEEETT
T ss_pred ecCCeEEEEECC------CCEEEEEEcCCCCEEEEEEC-CCC---CccEEEEeeCCCEEEEEECC---CCCcEEEEEecC
Confidence 345678776431 25688888765433332211 111 11334443 6789987532 113578888876
Q ss_pred CCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeE
Q 010011 119 SHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (520)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~ 196 (520)
...-+.+.. ... ..-.++++. +++||+.-.. .+.++++|+....-..+... ...| ..+
T Consensus 155 g~~~~~~~~-~~~---~~P~gia~d~~~~~lyv~d~~-----------~~~I~~~~~~g~~~~~~~~~--~~~P---~gi 214 (267)
T 1npe_A 155 GTNRRILAQ-DNL---GLPNGLTFDAFSSQLCWVDAG-----------THRAECLNPAQPGRRKVLEG--LQYP---FAV 214 (267)
T ss_dssp SCCCEEEEC-TTC---SCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTEEEEEEEEEC--CCSE---EEE
T ss_pred CCCcEEEEE-CCC---CCCcEEEEcCCCCEEEEEECC-----------CCEEEEEecCCCceEEEecC--CCCc---eEE
Confidence 543222211 111 122344443 4689987542 35788999876543333221 1112 345
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 010011 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
+..++.||+.... .+.+.++|+.+.+....
T Consensus 215 ~~d~~~lyva~~~------~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 215 TSYGKNLYYTDWK------TNSVIAMDLAISKEMDT 244 (267)
T ss_dssp EEETTEEEEEETT------TTEEEEEETTTTEEEEE
T ss_pred EEeCCEEEEEECC------CCeEEEEeCCCCCceEE
Confidence 5668899997532 24689999988765543
No 269
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=42.62 E-value=2.2e+02 Score=26.72 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=15.8
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (520)
++.+++.|+.+ ..+.++|+.+.+.
T Consensus 87 ~~~~l~s~s~D-----~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 87 ENCFAISSSWD-----KTLRLWDLRTGTT 110 (343)
T ss_dssp STTEEEEEETT-----SEEEEEETTSSCE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCcE
Confidence 45566666654 3588889887654
No 270
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=42.33 E-value=2e+02 Score=26.09 Aligned_cols=141 Identities=21% Similarity=0.380 Sum_probs=71.0
Q ss_pred ECCEEEEEcCCCCCCCCCcEEEEECCCCeEE--eeccc-CCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeE
Q 010011 93 VGENLYVFGGTDGMNPLRDLHILDTSSHTWI--SPSVR-GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (520)
Q Consensus 93 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~--~~~~~-g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~ 169 (520)
.++++|+|=|. ..|+++.....+. .+... ..+|. .-. ++...++++|+|=| +.+|
T Consensus 27 ~~g~~yfFkg~-------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~ID-AA~~~~~~~yfFkG-------------~~yw 84 (219)
T 1hxn_A 27 NHGATYVFSGS-------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVD-AAFSWEDKLYLIQD-------------TKVY 84 (219)
T ss_dssp TTSCEEEEETT-------EEEESSSSSCTTCCEEGGGTCTTSCS-SCS-EEEEETTEEEEEET-------------TEEE
T ss_pred CCCcEEEEeCC-------EEEEEcCCCCCCCceEhhhhccCCCC-Ccc-EEEEECCcEEEecC-------------CEEE
Confidence 47889999763 4566654332211 11111 02332 222 34445899999988 4578
Q ss_pred EEEcCc-ceE-----EEcccCCCCCCC----CcceeEEee--CCEEEEEecCCCCCcccCceEEEECCCC---cEEEeeC
Q 010011 170 ILNTET-FVW-----KRATTSGNPPSA----RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTL---TWKELNT 234 (520)
Q Consensus 170 ~~d~~t-~~W-----~~v~~~~~~p~~----r~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~---~W~~~~~ 234 (520)
+|+..+ .+- +.+...-..|.. +.. ++... ++++|+|-| +..|+||..+. .|.....
T Consensus 85 ~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~ID-AA~~~~~~gk~yfFkG--------~~ywr~d~~~~P~~i~~~~~g 155 (219)
T 1hxn_A 85 VFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVD-AAFVCPGSSRLHIMAG--------RRLWWLDLKSGAQATWTELPW 155 (219)
T ss_dssp EEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCC-EEECCTTCCEEEEEET--------TEEEEEEGGGGGGCCCEEECC
T ss_pred EEeCCCCceecCCCCeehhhccCCCCcccccccc-eeEEecCCCEEEEEeC--------CEEEEEeCCCCceEhhhcCCC
Confidence 887542 111 122210012222 122 23322 689999977 35788986542 2332221
Q ss_pred CCCCCCCCceeEEEE------------ECCEEEEEecccCCCCccCcEEEEecCC
Q 010011 235 SGMVLSPRAGHSTVA------------FGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 235 ~~~~p~~R~~hs~~~------------~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
. .... .++.. .++.+|+|-|. ..|+||..+
T Consensus 156 ---~-p~~v-dAa~~~~~~~~~~~~~~~~~~~YFFkg~--------~y~r~~~~~ 197 (219)
T 1hxn_A 156 ---P-HEKV-DGALCMEKPLGPNSCSTSGPNLYLIHGP--------NLYCYRHVD 197 (219)
T ss_dssp ---S-CSCC-SEEEEESSCSSSCCSCSSSCEEEEEETT--------EEEEESSHH
T ss_pred ---C-CCCc-CEEEEccccccccceeccCCeEEEEECC--------EEEEEeCCc
Confidence 1 1122 23333 34678888874 367887654
No 271
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=42.20 E-value=1.3e+02 Score=32.01 Aligned_cols=107 Identities=5% Similarity=-0.057 Sum_probs=52.9
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCCceEE-EECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceE---EEcccCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW---KRATTSG 185 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W---~~v~~~~ 185 (520)
..++++|+.+++-..+....... ...-.+.. .-+++.++++..... .........++++|+.+.+. ..+.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~~--~~~~s~~~~i~~~d~~~g~~~~~~~l~--- 109 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYSK--LWRYSYTATYYIYDLSNGEFVRGNELP--- 109 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEEE--CSSSCEEEEEEEEETTTTEECCSSCCC---
T ss_pred CCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCce--eEEeecceEEEEEECCCCccccceecC---
Confidence 36999999988865543110000 00111222 235555555441000 00011246799999988876 3332
Q ss_pred CCCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEee
Q 010011 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELN 233 (520)
Q Consensus 186 ~~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~ 233 (520)
.........-+++.++++. -++++++|..+..-..+.
T Consensus 110 ----~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 110 ----RPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp ----SSBCCEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECC
T ss_pred ----cccccceECCCCCEEEEEE-------CCeEEEEeCCCCCcEEEe
Confidence 1112222233555555542 136888888777666554
No 272
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=39.99 E-value=3.8e+02 Score=28.79 Aligned_cols=233 Identities=16% Similarity=0.225 Sum_probs=114.9
Q ss_pred eEEEEECCCCeEEeeeccCCCCCC---CCcceEEEE----CCEEEEEcCCCC--CCC-CCcEEEEECCCCeEEeecccCC
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTP---RDSHSCTTV----GENLYVFGGTDG--MNP-LRDLHILDTSSHTWISPSVRGE 130 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~---R~~hs~~~~----~~~iyv~GG~~~--~~~-~~~~~~yd~~t~~W~~~~~~g~ 130 (520)
.+|+.+-...+|+.+.. .+... .......++ .+.||+..|... ..+ ...+++=.-.-.+|+++.....
T Consensus 46 gv~rS~D~G~tW~~i~~--~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~ 123 (737)
T 2cn3_A 46 GAYRWDPSTETWIPLLD--HFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFK 123 (737)
T ss_dssp CEEEEETTTTEEEECCT--TCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSC
T ss_pred cEEEeCCCCCCEEECcC--ccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcc
Confidence 48999988999999642 11111 112223333 357888765311 111 1234443334578988763211
Q ss_pred ----CCCCCCCceEEEE---CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCC------CC--CC---c
Q 010011 131 ----GPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP------PS--AR---D 192 (520)
Q Consensus 131 ----~p~~r~~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~------p~--~r---~ 192 (520)
+|.....+.+++. .+.||+-... . ..+|+-+-.-.+|+++...... |. .+ .
T Consensus 124 ~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~-------g----~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~ 192 (737)
T 2cn3_A 124 MGGNMPGRSMGERLAIDPNDNRILYLGTRC-------G----NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDII 192 (737)
T ss_dssp CCTTSTTTTSCCCEEECSSCTTCEEEECST-------T----CCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSBC
T ss_pred cCCCcCcccccceEEECCCCCCEEEEeecc-------C----CcEEEeCCCCcceecccCCCCCcccccCcccccccCCC
Confidence 1211123455543 2456663210 0 2355544455789988632111 00 00 0
Q ss_pred ceeEEeeC----------CEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEeccc
Q 010011 193 SHTCSSWK----------NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFT 261 (520)
Q Consensus 193 ~h~~~~~~----------~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~ 261 (520)
+.+.+.++ +.||+--+.. . ..+++=.-...+|+.+.. +|.....|.++.. ++.+|+..+..
T Consensus 193 g~~~v~~dp~~~~~~~~~~~v~~~~~~~-~----~~v~~S~DgG~tW~~~~~---~p~~~~~~~~~~~~~~~l~~~~~d~ 264 (737)
T 2cn3_A 193 GVVWVVFDKSSSTPGNPTKTIYVGVADK-N----ESIYRSTDGGVTWKAVPG---QPKGLLPHHGVLASNGMLYITYGDT 264 (737)
T ss_dssp CEEEEEECGGGSCTTSCCSCEEEEESCS-S----CCEEEESSTTSCCEECTT---CCCSSEEEEEEECTTSEEEEEEESS
T ss_pred CEEEEEcCCCCcccCCCCCEEEEEecCC-C----ccEEEEcCCCCceEECCC---CCCcccceEEEECCCCeEEEEecCC
Confidence 11112221 1555532111 1 124333234567998873 4544444544433 67888875432
Q ss_pred CC---CCccCcEEEEecCCCcEEEeeeCCCC-CCCceeeeeeeeccccCCEEEEEcc
Q 010011 262 DS---QNLYDDLYMIDVDSGLWTKVITTGEG-PSARFSVAGDCLDPLKGGVLVFIGG 314 (520)
Q Consensus 262 ~~---~~~~~dv~~yd~~~~~W~~l~~~~~~-p~~r~~~~~~~~~~~~~~~l~v~GG 314 (520)
.. ......+|+++-...+|+.+...+.. +..++..+...+.+...+.||+.+.
T Consensus 265 ~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 265 CGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp CCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEE
T ss_pred CCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEec
Confidence 11 11235699999999999998764321 1234544444555555667777654
No 273
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=39.46 E-value=3.8e+02 Score=28.65 Aligned_cols=180 Identities=9% Similarity=0.081 Sum_probs=87.4
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC---eEEeecccCCCCCCC
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH---TWISPSVRGEGPEAR 135 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~---~W~~~~~~g~~p~~r 135 (520)
.+.++++.+.....+. +....-++++.. ++.||+.--. ...|+++++.+. .-........+..
T Consensus 387 ~I~~id~~~~~~~~~~-----~~~~~p~gla~d~~~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~i~~~~~~-- 454 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLI-----PNLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQA-- 454 (699)
T ss_dssp C-CEECTTSCCEECCS-----CCCTTCCCCEEETTTTEEEECCTT-----TTSBEEEESCCCCC-CCCCCBCCSCC----
T ss_pred ceEEEeCCCCcceeee-----ccCcceEEEccccccCeEEEEecC-----CCeEEEEecCCCCCCcceEEEEeCCCCC--
Confidence 5667777776665532 222233444443 5788886321 346889988751 1000000001111
Q ss_pred CCceEEE--ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe--eCCEEEEEecCCC
Q 010011 136 EGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDG 211 (520)
Q Consensus 136 ~~hs~~~--~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~--~~~~lyv~GG~~~ 211 (520)
-.++++ .+++||+.-.. .+.|+++++....-..+... ....| ..+++ .++.||+..-.
T Consensus 455 -P~glavD~~~g~LY~tD~~-----------~~~I~v~d~dg~~~~~l~~~-~~~~P---~giavDp~~g~ly~td~~-- 516 (699)
T 1n7d_A 455 -PDGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE-QGSKP---RAIVVDPVHGFMYWTDWG-- 516 (699)
T ss_dssp -CCCEECCCSSSBCEECCTT-----------TSCEEEEBSSSCCEEEECCC-SSCCC---CCEECCSSSSCCEECCCS--
T ss_pred -cceEEEEeeCCcEEEEecc-----------CCeEEEEecCCCceEEEEeC-CCCCc---ceEEEccCCCcEEEcccC--
Confidence 122333 35788885321 34578888876654444321 11222 22333 25677775411
Q ss_pred CCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE--ECCEEEEEecccCCCCccCcEEEEecCCCcEEEe
Q 010011 212 HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (520)
Q Consensus 212 ~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (520)
....|+++++....-+.+... .+..| ..+++ .+++||+.-.. .+.|+++|+....-+.+
T Consensus 517 ---~~~~I~~~~~dG~~~~~l~~~-~l~~P---nGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~ 577 (699)
T 1n7d_A 517 ---TPAKIKKGGLNGVDIYSLVTE-NIQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTI 577 (699)
T ss_dssp ---SSCCEEBCCSSSCCCCEESCS-SCSSC---CCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEE
T ss_pred ---CCCeEEEEeCCCCCeeEEEeC-CCCCc---cEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEE
Confidence 124577777765433333221 11111 12333 25778887643 24589999876544444
No 274
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=39.38 E-value=55 Score=30.82 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=51.4
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE----CCEEEEEecccCCCCccCcEEEEec
Q 010011 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF----GKNLFVFGGFTDSQNLYDDLYMIDV 275 (520)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~----~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (520)
++++++.|+.++ .+.+||+.+.....+.. +......-.++.. ++.+++.|+.+. .+.+||+
T Consensus 24 ~g~~lasgs~D~------~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~ 88 (316)
T 3bg1_A 24 YGTRLATCSSDR------SVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWRE 88 (316)
T ss_dssp GGCEEEEEETTT------EEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECC
T ss_pred CCCEEEEEeCCC------eEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEEC
Confidence 566777777543 36777876665433322 1111111122222 256777777643 3889999
Q ss_pred CCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCCC
Q 010011 276 DSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (520)
Q Consensus 276 ~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (520)
++..|..+...... .....++++.+...+.+++.|+.+..
T Consensus 89 ~~~~~~~~~~~~~h---~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 89 ENGTWEKSHEHAGH---DSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp SSSCCCEEEEECCC---SSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred CCCcceEEEEccCC---CCceEEEEECCCCCCcEEEEEcCCCC
Confidence 98877655432111 11112223322223567777776654
No 275
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=38.39 E-value=4.4e+02 Score=29.06 Aligned_cols=199 Identities=11% Similarity=0.006 Sum_probs=91.6
Q ss_pred EEEE-cCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCCCCCCCcEEEE
Q 010011 37 CNAI-KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (520)
Q Consensus 37 ~~~v-~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~~~y 115 (520)
++++ +++. +++.|+.+ ..+.+||..+.+-... .+....-.+++...+++++.|+.+ ..+.++
T Consensus 22 ~lafspdg~-~lAsgs~D------g~I~lw~~~~~~~~~~-----~~~~~~V~~l~fspg~~L~S~s~D-----~~v~lW 84 (902)
T 2oaj_A 22 AAAFDFTQN-LLAIATVT------GEVHIYGQQQVEVVIK-----LEDRSAIKEMRFVKGIYLVVINAK-----DTVYVL 84 (902)
T ss_dssp EEEEETTTT-EEEEEETT------SEEEEECSTTCEEEEE-----CSSCCCEEEEEEETTTEEEEEETT-----CEEEEE
T ss_pred EEEECCCCC-EEEEEeCC------CEEEEEeCCCcEEEEE-----cCCCCCEEEEEEcCCCEEEEEECc-----CeEEEE
Confidence 3344 4444 66667643 4578888776554331 111111122222334445555433 468888
Q ss_pred ECCCCeEEeecccCCCCCCCCCceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCC-----CCC
Q 010011 116 DTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-----NPP 188 (520)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~-----~~p 188 (520)
|+.+.+-...- ..+ ....++.. ++..++.|+. ...+.+||+.+.......... ..+
T Consensus 85 d~~~~~~~~~~---~~~---~~V~~v~~sp~g~~l~sgs~-----------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 85 SLYSQKVLTTV---FVP---GKITSIDTDASLDWMLIGLQ-----------NGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp ETTTCSEEEEE---ECS---SCEEEEECCTTCSEEEEEET-----------TSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred ECCCCcEEEEE---cCC---CCEEEEEECCCCCEEEEEcC-----------CCcEEEEECCCCccccceecccccccccc
Confidence 98876543211 011 11122222 3455555652 245778888776543211000 000
Q ss_pred CCC--cceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCC---CCC---------CC-ceeEEEEE-
Q 010011 189 SAR--DSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM---VLS---------PR-AGHSTVAF- 250 (520)
Q Consensus 189 ~~r--~~h~~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~---~p~---------~R-~~hs~~~~- 250 (520)
... .-.+++.. +..+++.|+.+ ..+ .+|+.+.+-...-.... .+. .+ ..-.++.+
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCC------CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 111 11122222 23566676643 237 88988776443221000 000 00 11122222
Q ss_pred -CCEEEEEecccCCCCccCcEEEEecCCCcEEE
Q 010011 251 -GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 251 -~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (520)
+++.++.|+.+. .+.+||+++++-..
T Consensus 221 pdg~~lasgs~Dg------~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 221 PNSLHIITIHEDN------SLVFWDANSGHMIM 247 (902)
T ss_dssp TTSSEEEEEETTC------CEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCC------eEEEEECCCCcEEE
Confidence 466777777643 48999998876543
No 276
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=37.83 E-value=2.3e+02 Score=27.20 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=42.3
Q ss_pred EEEcCCCEEEEEcCcC----CCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCc
Q 010011 38 NAIKGGRFLYVFGGYG----KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRD 111 (520)
Q Consensus 38 ~~v~~g~~Iyi~GG~~----~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 111 (520)
+...+++++|+....+ ......+.++++|+.+.+=.. .+|... -++++.- +..||+.++ +.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~-----~i~~~~-p~~ia~spdg~~l~v~n~-------~~ 326 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA-----RIPGRD-ALSMTIDQQRNLMLTLDG-------GN 326 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE-----EEECTT-CCEEEEETTTTEEEEECS-------SC
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE-----EEecCC-eeEEEECCCCCEEEEeCC-------Ce
Confidence 4456678899874311 111134689999999876443 122222 3444443 456776542 78
Q ss_pred EEEEECCCC
Q 010011 112 LHILDTSSH 120 (520)
Q Consensus 112 ~~~yd~~t~ 120 (520)
+.+||+.+.
T Consensus 327 v~v~D~~t~ 335 (361)
T 2oiz_A 327 VNVYDISQP 335 (361)
T ss_dssp EEEEECSSS
T ss_pred EEEEECCCC
Confidence 999999987
No 277
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=36.28 E-value=3.6e+02 Score=27.44 Aligned_cols=174 Identities=13% Similarity=0.034 Sum_probs=79.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCC----eEEeec----ccCCCCCCCCCceEEEECCEEEEE--eCCCCCCCCCCcc
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSH----TWISPS----VRGEGPEAREGHSAALVGKRLFIF--GGCGKSSNTNDEV 163 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~----~W~~~~----~~g~~p~~r~~hs~~~~~~~lyv~--GG~~~~~~~~~~~ 163 (520)
..++|+-|.. .+.++++|+.++ +-.+.- ........+-++..+.-++ |||- |+- ...
T Consensus 95 r~~l~v~~l~-----s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~-------~g~ 161 (462)
T 2ece_A 95 RRFLIVPGLR-----SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE-------EGE 161 (462)
T ss_dssp SCEEEEEBTT-----TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-------TSC
T ss_pred CCEEEEccCC-----CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-------CCC
Confidence 4567777754 367999999876 332211 0000011122233344445 7763 221 112
Q ss_pred eeceeEEEEcCcceEEEcccCCCCCCCCcceeE--EeeCCEEEEEe---------cCCCCC---cccCceEEEECCCCcE
Q 010011 164 YYNDLYILNTETFVWKRATTSGNPPSARDSHTC--SSWKNKIIVIG---------GEDGHD---YYLSDVHILDTDTLTW 229 (520)
Q Consensus 164 ~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~--~~~~~~lyv~G---------G~~~~~---~~~~~i~~yd~~t~~W 229 (520)
-...+.++|.++++-..--..+..|... .+-+ ....+.+|+-- |..... .+.+.|.+||..+.+-
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~-~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYL-AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCC-CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccc-cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 2467999999876533322111122111 1112 11244455442 222221 3467899999987643
Q ss_pred EEeeCCCC-CCCCCceeEEEEE---CCEEEEEecccCCCCccCcEEEEecCCCcEEEee
Q 010011 230 KELNTSGM-VLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (520)
Q Consensus 230 ~~~~~~~~-~p~~R~~hs~~~~---~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (520)
...-..+. -..|| |-...+ +..+||..-.. .....+.|++|..+.+.|..+.
T Consensus 241 ~~tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~-~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 241 IHSLTLGEENRMAL--ELRPLHDPTKLMGFINMVVS-LKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp EEEEESCTTEEEEE--EEEECSSTTCCEEEEEEEEE-TTTCCEEEEEEEEETTEEEEEE
T ss_pred eeEEecCCCCCccc--eeEeeECCCCCEEEEEEeee-ccCCCceEEEEEecCCceeEEE
Confidence 22111110 00111 111111 34566655411 1112355776666668887665
No 278
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=35.96 E-value=2.9e+02 Score=26.16 Aligned_cols=56 Identities=7% Similarity=0.070 Sum_probs=29.5
Q ss_pred CCEEEEEecccCCCCccCc-EEEEecCCCcEEEeeeCCCCCCCceeeeeeeeccccCCEEEEEcccCC
Q 010011 251 GKNLFVFGGFTDSQNLYDD-LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (520)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~d-v~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (520)
++++++.|+.+ .. +.+||+.+..-...-..+.... ......+ ..++.+++.|+.+.
T Consensus 206 ~g~~l~s~s~d------~~~v~iwd~~~~~~~~~~~~g~h~~---~v~~~~~--s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 206 KSDMVATCSQD------GTIIRVFKTEDGVLVREFRRGLDRA---DVVDMKW--STDGSKLAVVSDKW 262 (355)
T ss_dssp TSSEEEEEETT------CSEEEEEETTTCCEEEEEECTTCCS---CEEEEEE--CTTSCEEEEEETTC
T ss_pred CCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCCCC---cEEEEEE--CCCCCEEEEEECCC
Confidence 45677777753 34 8899998765433222110111 1122222 34667777777654
No 279
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=35.94 E-value=3e+02 Score=26.34 Aligned_cols=84 Identities=13% Similarity=0.236 Sum_probs=44.5
Q ss_pred EEEEEcCCCEEEEEcCcCC---CCCCcCeEEEEECCCCeE-EeeeccCCCC-CCCCcceEEE--ECCEEEEEcCCCCCCC
Q 010011 36 TCNAIKGGRFLYVFGGYGK---DNCQTNQVHVFDTVNQTW-SQPVIKGSPP-TPRDSHSCTT--VGENLYVFGGTDGMNP 108 (520)
Q Consensus 36 s~~~v~~g~~Iyi~GG~~~---~~~~~~~~~~yd~~t~~W-~~l~~~g~~P-~~R~~hs~~~--~~~~iyv~GG~~~~~~ 108 (520)
..+..++++++|+..-... .....+.+.+||+.+.+- ..++..+... ....-+.++. -+..||+... ..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~----~~ 129 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA----SP 129 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE----SS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC----CC
Confidence 4455677888998752211 111235689999987643 3333211100 0112223333 2456887631 11
Q ss_pred CCcEEEEECCCCeEE
Q 010011 109 LRDLHILDTSSHTWI 123 (520)
Q Consensus 109 ~~~~~~yd~~t~~W~ 123 (520)
.+.+.++|+.+++-.
T Consensus 130 ~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 130 ATSIGIVDVAKGDYV 144 (361)
T ss_dssp SEEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCcEE
Confidence 357899999988654
No 280
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=34.12 E-value=3.3e+02 Score=26.38 Aligned_cols=229 Identities=12% Similarity=0.096 Sum_probs=106.7
Q ss_pred CeEEEEECCCCeEEeeeccCC---CCCCCCcceEEE----ECCEEEEEc---CC---CCC--CCCCcEEEEECC---CC-
Q 010011 60 NQVHVFDTVNQTWSQPVIKGS---PPTPRDSHSCTT----VGENLYVFG---GT---DGM--NPLRDLHILDTS---SH- 120 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~---~P~~R~~hs~~~----~~~~iyv~G---G~---~~~--~~~~~~~~yd~~---t~- 120 (520)
..+.++|+..+.-..+...+- ........++.. -.++|+++- .. .+. ...+.+.+||+. ++
T Consensus 35 g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~ 114 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK 114 (334)
T ss_dssp TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC
T ss_pred CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCC
Confidence 568889998665444322110 011112234444 146788852 10 011 124679999988 44
Q ss_pred -eEEe-ecc-c-C--CCCCCCCC-ceEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcce---EEEcccCCCCC
Q 010011 121 -TWIS-PSV-R-G--EGPEAREG-HSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATTSGNPP 188 (520)
Q Consensus 121 -~W~~-~~~-~-g--~~p~~r~~-hs~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~---W~~v~~~~~~p 188 (520)
.|.. +.. . + .....+++ ..=..+ ++++||.+-.. ...|++++++... |-.-. +.+
T Consensus 115 ~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~----------~~~I~rV~pdG~~~~~~~~~~---~~~ 181 (334)
T 2p9w_A 115 PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG----------MPAIARVSADGKTVSTFAWES---GNG 181 (334)
T ss_dssp CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----------SCEEEEECTTSCCEEEEEECC---CCS
T ss_pred EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC----------CCeEEEEeCCCCEEeeeeecC---CCc
Confidence 3642 110 0 0 00000222 222223 47899965521 1558999987542 43222 222
Q ss_pred CCCccee-EEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCC--CCC--CCCCceeEEEEECCEEEEEeccc
Q 010011 189 SARDSHT-CSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMV--LSPRAGHSTVAFGKNLFVFGGFT 261 (520)
Q Consensus 189 ~~r~~h~-~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~--~~~--p~~R~~hs~~~~~~~iyv~GG~~ 261 (520)
..+.+.+ +++. ++.|++..+ . ..+++||+.+-...+++.. |.. ...--+......+++++++.-..
T Consensus 182 ~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 182 GQRPGYSGITFDPHSNKLIAFGG-P------RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp SSCCSCSEEEEETTTTEEEEESS-S------SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred ccccCcceEEEeCCCCEEEEEcC-C------CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 3344443 4444 456777654 2 3589999875332122221 111 00011112334688886655432
Q ss_pred CCCCccCcEEEEecCCCcEEEeeeCCCCCCC--ceeeeeeee-ccccCCEEEEEccc
Q 010011 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSA--RFSVAGDCL-DPLKGGVLVFIGGC 315 (520)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~--r~~~~~~~~-~~~~~~~l~v~GG~ 315 (520)
+.++++--..+ |+.....+..|.. -.+.+.... ....+++||++-++
T Consensus 255 ------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 255 ------PYAISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp ------TEEEEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred ------CCEEEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 23455554555 9876655433332 112221111 00257888887654
No 281
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=33.87 E-value=2.8e+02 Score=25.38 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=79.6
Q ss_pred CeEEEEECC-CCeEEeeeccCCCCCCCCcceEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCC-eEEeecccCCCCCCCC
Q 010011 60 NQVHVFDTV-NQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSH-TWISPSVRGEGPEARE 136 (520)
Q Consensus 60 ~~~~~yd~~-t~~W~~l~~~g~~P~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p~~r~ 136 (520)
..+++||+. ...|.... +.. ...+.+.. ++.||+.. . -..+++||+... .|.... +...
T Consensus 117 ~~l~~~d~~g~~~~~~~~-----~~~-~~~~~~~~~~g~l~vgt-~-----~~~l~~~d~~g~~~~~~~~-----~~~~- 178 (330)
T 3hxj_A 117 GHLYAINTDGTEKWRFKT-----KKA-IYATPIVSEDGTIYVGS-N-----DNYLYAINPDGTEKWRFKT-----NDAI- 178 (330)
T ss_dssp SEEEEECTTSCEEEEEEC-----SSC-CCSCCEECTTSCEEEEC-T-----TSEEEEECTTSCEEEEEEC-----SSCC-
T ss_pred CEEEEEcCCCCEEEEEcC-----CCc-eeeeeEEcCCCEEEEEc-C-----CCEEEEECCCCCEeEEEec-----CCCc-
Confidence 458899987 34576532 111 12223333 56777643 1 246899998822 365421 1111
Q ss_pred CceEEE-ECCEEEEEeCCCCCCCCCCcceeceeEEEEcC-cceEEEcccCCCCCCCCcceeEEee-CCEEEEEecCCCCC
Q 010011 137 GHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHD 213 (520)
Q Consensus 137 ~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~-t~~W~~v~~~~~~p~~r~~h~~~~~-~~~lyv~GG~~~~~ 213 (520)
..+.+. .++.||+-. ..+++||.. ...|+..... . ...+++.. ++.||+.. .
T Consensus 179 ~~~~~~d~~g~l~v~t--------------~~l~~~d~~g~~~~~~~~~~-----~-~~~~~~~~~~g~l~v~t-~---- 233 (330)
T 3hxj_A 179 TSAASIGKDGTIYFGS--------------DKVYAINPDGTEKWNFYAGY-----W-TVTRPAISEDGTIYVTS-L---- 233 (330)
T ss_dssp CSCCEECTTCCEEEES--------------SSEEEECTTSCEEEEECCSS-----C-CCSCCEECTTSCEEEEE-T----
T ss_pred eeeeEEcCCCEEEEEe--------------CEEEEECCCCcEEEEEccCC-----c-ceeceEECCCCeEEEEc-C----
Confidence 222333 356777642 347788843 2356554311 1 11223333 45677642 1
Q ss_pred cccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEEE-CCEEEEEecccCCCCccCcEEEEecCCC-cEEE
Q 010011 214 YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTK 282 (520)
Q Consensus 214 ~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~-~W~~ 282 (520)
-..+++||+............ .... +.+.. ++.||+.. .. ..+++||++.. .|..
T Consensus 234 --~~gl~~~~~~g~~~~~~~~~~----~~~~-~~~~~~~g~l~v~t-~~------ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 234 --DGHLYAINPDGTEKWRFKTGK----RIES-SPVIGNTDTIYFGS-YD------GHLYAINPDGTEKWNF 290 (330)
T ss_dssp --TTEEEEECTTSCEEEEEECSS----CCCS-CCEECTTSCEEEEC-TT------CEEEEECTTSCEEEEE
T ss_pred --CCeEEEECCCCCEeEEeeCCC----Cccc-cceEcCCCeEEEec-CC------CCEEEECCCCcEEEEE
Confidence 134788887554432333211 1111 12233 56677633 21 24899997433 3543
No 282
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=33.67 E-value=1.3e+02 Score=27.36 Aligned_cols=61 Identities=16% Similarity=0.309 Sum_probs=37.5
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEe-----ecccCCCCC------CCCCceEEE--ECCEEEEEeCCCCCCCCC
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWIS-----PSVRGEGPE------AREGHSAAL--VGKRLFIFGGCGKSSNTN 160 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~-----~~~~g~~p~------~r~~hs~~~--~~~~lyv~GG~~~~~~~~ 160 (520)
++++|+|-| +..|+||..+++-.. +. . ..|. +..-.++.. .++++|+|-|
T Consensus 129 ~~k~yfFkG-------~~yw~~d~~~~~~~~gyPk~i~-~-g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------- 191 (227)
T 3lp9_A 129 GKEVYLFKG-------DQYARIDYGSNSMVNKEIKSIS-S-GYPCFRNTIFESGADAAFASHKTNEVYFFKD-------- 191 (227)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEESSSSCEEHH-H-HCGGGTTSGGGGCCSEEEECSSTTEEEEEET--------
T ss_pred CCEEEEEEC-------CEEEEEeCCCccccCCCCeEHH-H-CCCCccccccCCCccEEEEcCCCceEEEEEC--------
Confidence 689999987 479999987664321 11 0 1221 112223333 3579999988
Q ss_pred CcceeceeEEEEcCcc
Q 010011 161 DEVYYNDLYILNTETF 176 (520)
Q Consensus 161 ~~~~~~~v~~~d~~t~ 176 (520)
+..|+||..+.
T Consensus 192 -----~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 -----DHYARVKVTPX 202 (227)
T ss_dssp -----TEEEEEECCSS
T ss_pred -----CEEEEEECCcc
Confidence 45788987665
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=33.24 E-value=5.1e+02 Score=28.27 Aligned_cols=202 Identities=10% Similarity=0.079 Sum_probs=103.5
Q ss_pred eEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC----eEEeecccCCCCCC
Q 010011 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH----TWISPSVRGEGPEA 134 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~----~W~~~~~~g~~p~~ 134 (520)
.+..+++....+..+.. ..+.-.+++.. +++||+.-.. .+.|+++++... ....+.. ..+..
T Consensus 405 ~Ir~i~l~~~~~~~l~~-----~~~~~~gl~~d~~~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~-~~l~~- 472 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIP-----NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVIS-RDIQA- 472 (791)
T ss_dssp SEEEECTTSCCCEEEEC-----SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEEC-SSCSC-
T ss_pred ceeEeeccCCcceeeec-----CCCceEEEeecccCCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEe-cCCCC-
Confidence 45666766666665431 12222334433 5789988532 356888887642 2222211 01111
Q ss_pred CCCceEEE--ECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEee--CCEEEEEecCC
Q 010011 135 REGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGED 210 (520)
Q Consensus 135 r~~hs~~~--~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~~--~~~lyv~GG~~ 210 (520)
-.++++ ++++||+.-.. ...|+++++....-+.+... .+..| ..+++. ++.||+.--.
T Consensus 473 --P~GLAvD~~~~~LY~tD~~-----------~~~I~v~~ldG~~~~~l~~~-~l~~P---~gIaVDp~~g~LYwtD~g- 534 (791)
T 3m0c_C 473 --PDGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWG- 534 (791)
T ss_dssp --CCEEEEETTTTEEEEEETT-----------TTEEEEEETTSSSEEEEEEC-TTCCE---EEEEEETTTTEEEEEECS-
T ss_pred --cceeeeeecCCcEEEEecC-----------CCeEEEEeCCCCeEEEEEeC-CCCCc---ceEEEecCCCCEEEecCC-
Confidence 123444 36789997542 35688999876665554321 12222 234443 6889987521
Q ss_pred CCCcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEEE--ECCEEEEEecccCCCCccCcEEEEecCCCcEEEeeeC-C
Q 010011 211 GHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT-G 287 (520)
Q Consensus 211 ~~~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~-~ 287 (520)
....|+++++....-+.+...+ +..| ..+++ .+++||+.-.. .+.|+++|+....-..+... .
T Consensus 535 ----~~~~I~~~~~dG~~~~~lv~~~-l~~P---~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~ 600 (791)
T 3m0c_C 535 ----TPAKIKKGGLNGVDIYSLVTEN-IQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEK 600 (791)
T ss_dssp ----SSCEEEEEETTSCCEEEEECSS-CSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTT
T ss_pred ----CCCeEEEEecCCCceEEEEeCC-CCCc---eEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCC
Confidence 1246899998766555544311 1111 12332 36889998532 35699999876654444332 2
Q ss_pred CCCCCceeeeeeeeccccCCEEEEEc
Q 010011 288 EGPSARFSVAGDCLDPLKGGVLVFIG 313 (520)
Q Consensus 288 ~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (520)
..+.+ ++++ +.++.||+.-
T Consensus 601 ~l~~P-~gla------v~~~~lYwtD 619 (791)
T 3m0c_C 601 RLAHP-FSLA------VFEDKVFWTD 619 (791)
T ss_dssp TTSSE-EEEE------EETTEEEEEE
T ss_pred ccCCC-CEEE------EeCCEEEEEE
Confidence 22222 2222 2366788764
No 284
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=32.34 E-value=4.8e+02 Score=27.68 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=33.5
Q ss_pred CeEEEEECCCCeEEeeeccCCCCCCC-Ccc--eEEEECCEEEEEcCCCC----CCCCCcEEEEECCCCeEEeec
Q 010011 60 NQVHVFDTVNQTWSQPVIKGSPPTPR-DSH--SCTTVGENLYVFGGTDG----MNPLRDLHILDTSSHTWISPS 126 (520)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R-~~h--s~~~~~~~iyv~GG~~~----~~~~~~~~~yd~~t~~W~~~~ 126 (520)
..+++||+.+++=..+- .+...... ... -...-+++..+++..+. .+...++|+||+.+++..++.
T Consensus 36 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp TEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred CcEEEEECCCCceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence 46899999988755542 22211110 011 11122444334433211 122367899999999876543
No 285
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=31.35 E-value=3.6e+02 Score=25.92 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=55.9
Q ss_pred CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEE
Q 010011 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHIL 222 (520)
Q Consensus 144 ~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~y 222 (520)
++.+++.|+. ...+.++|+.+.+-...-. ..+....-.+++. .++.+++.|+.++ .+.+|
T Consensus 181 ~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iw 241 (437)
T 3gre_A 181 EKSLLVALTN-----------LSRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTRG------IIDIW 241 (437)
T ss_dssp SCEEEEEEET-----------TSEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETTS------CEEEE
T ss_pred CCCEEEEEeC-----------CCeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCCC------eEEEE
Confidence 3667777773 2467888987755332211 1001111122222 2677778887653 48899
Q ss_pred ECCCCcEEEeeCCCCCCCCCceeEEE-EE-----CCEEEEEecccCCCCccCcEEEEecCCCcEEE
Q 010011 223 DTDTLTWKELNTSGMVLSPRAGHSTV-AF-----GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (520)
Q Consensus 223 d~~t~~W~~~~~~~~~p~~R~~hs~~-~~-----~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (520)
|+.+.+....-. ... .....++ .. ++.+++.|+.+ ..+.+||+.+..-..
T Consensus 242 d~~~~~~~~~~~---~~~-~~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 242 DIRFNVLIRSWS---FGD-HAPITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQY 297 (437)
T ss_dssp ETTTTEEEEEEB---CTT-CEEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEEE
T ss_pred EcCCccEEEEEe---cCC-CCceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEEE
Confidence 998765443221 111 1111122 11 23455555543 248999998776433
No 286
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=31.14 E-value=3.8e+02 Score=26.10 Aligned_cols=149 Identities=7% Similarity=-0.014 Sum_probs=79.2
Q ss_pred CCcEEEEECC--CCeEEeecccCC-C-CCCCCCceEEEEC---C--EEEEEeCCCCCCCCCCcceeceeEEEEcCcceEE
Q 010011 109 LRDLHILDTS--SHTWISPSVRGE-G-PEAREGHSAALVG---K--RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (520)
Q Consensus 109 ~~~~~~yd~~--t~~W~~~~~~g~-~-p~~r~~hs~~~~~---~--~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~ 179 (520)
...+++||+. +.+-+++...+. . +..-.-|+..+.. + +|||+--. ...-.-.++.+++.+....
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~-------~~~s~ielf~~d~~~~~~~ 154 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP-------GSSSTVEVFKFQEEEKSLL 154 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS-------TTCCEEEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC-------CCCCeEEEEEEECCCCEEE
Confidence 4568889987 345666665542 1 1233446665542 3 58887442 0112456778888777666
Q ss_pred EcccCCCCCCCCcceeEEeeCCEEEEEecCC-CC----------CcccCceEEEECCCCcEEEeeCCCCCCCCCceeEEE
Q 010011 180 RATTSGNPPSARDSHTCSSWKNKIIVIGGED-GH----------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (520)
Q Consensus 180 ~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~-~~----------~~~~~~i~~yd~~t~~W~~~~~~~~~p~~R~~hs~~ 248 (520)
.+......+..+-.-..+.-++.+|+-+..- .. ......+++||+. +.+.+.. ... .-...+
T Consensus 155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~----~l~-~pNGia 227 (355)
T 3sre_A 155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE----GFD-FANGIN 227 (355)
T ss_dssp EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE----EES-SEEEEE
T ss_pred EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec----CCc-ccCcce
Confidence 6543333344444444555588888764321 10 1123568889884 3443322 011 111233
Q ss_pred EE--CCEEEEEecccCCCCccCcEEEEecCC
Q 010011 249 AF--GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (520)
Q Consensus 249 ~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (520)
.. ++.+|+.--.. ..|++||+..
T Consensus 228 ~spDg~~lYvadt~~------~~I~~~~~~~ 252 (355)
T 3sre_A 228 ISPDGKYVYIAELLA------HKIHVYEKHA 252 (355)
T ss_dssp ECTTSSEEEEEEGGG------TEEEEEEECT
T ss_pred ECCCCCEEEEEeCCC------CeEEEEEECC
Confidence 32 34677765432 4589999864
No 287
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.58 E-value=5.4e+02 Score=27.69 Aligned_cols=149 Identities=12% Similarity=0.047 Sum_probs=79.0
Q ss_pred cCeEEEEECCC--CeEEeeeccCCCCCCCCcceEEEECCEEEEEcCCCC-----CCCCCcEEEEECCC--------CeEE
Q 010011 59 TNQVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG-----MNPLRDLHILDTSS--------HTWI 123 (520)
Q Consensus 59 ~~~~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~iyv~GG~~~-----~~~~~~~~~yd~~t--------~~W~ 123 (520)
.+.+|..|... ..|.++. .|+...-....++++|+....+- .-+...+...|+.+ ..|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKIN------MPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK 341 (711)
T ss_dssp CEEEEEEECSSSSCEEEECC------SCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE
T ss_pred ceeEEEEcCCCCCCcceEee------cCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce
Confidence 36677777653 6677752 23332224567999999875431 12456789999765 3687
Q ss_pred eecccCCCCCC-CCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcc-cCCCCCCCCcceeEEe--e
Q 010011 124 SPSVRGEGPEA-REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT-TSGNPPSARDSHTCSS--W 199 (520)
Q Consensus 124 ~~~~~g~~p~~-r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~-~~~~~p~~r~~h~~~~--~ 199 (520)
.+-. |.. +.--.....++.|++..-. .-...++++|+.+..|.... . ..|.. ....... .
T Consensus 342 ~~~~----~~~~~~l~~~~~~~~~l~~~~~~---------~~~~~l~~~~~~~g~~~~~~~i--~lp~~-~~~~~~~~~~ 405 (711)
T 4hvt_A 342 ILFT----PTANEVFNFISTTKDRVFLATYD---------NVVAKVVTFTLENEQWTKPVVL--KLPYQ-NAIFGMSSYE 405 (711)
T ss_dssp EEEC----CCTTEEEEEEEECSSCEEEEEEE---------TTEEEEEEECEETTEECCCEEE--CCCST-TCEEEEECCT
T ss_pred EEEC----CCCCCeEEEEEEECCEEEEEEEE---------CCEEEEEEEECCCCceEEEecc--CCCCC-eEEEEEeecC
Confidence 5321 111 1122333445666664321 11456888988878774321 1 12321 1122221 1
Q ss_pred -CCEEE-EEecCCCCCcccCceEEEECCCCcEEEeeC
Q 010011 200 -KNKII-VIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (520)
Q Consensus 200 -~~~ly-v~GG~~~~~~~~~~i~~yd~~t~~W~~~~~ 234 (520)
++.++ .+.+.. ....++.+|+. .+++.+..
T Consensus 406 ~~~~~~~~~ss~~----~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 406 EEEEALITIENSI----VPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp TCSCEEEEEECSS----SCCEEEEECTT-SCEEEEEC
T ss_pred cCCEEEEEEecCC----CCCEEEEEeCC-CcEEEEec
Confidence 23333 333332 23568899988 77877765
No 288
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=29.81 E-value=4.1e+02 Score=26.03 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=13.0
Q ss_pred cceEEEEEcCCCEEEEEcC
Q 010011 33 WGHTCNAIKGGRFLYVFGG 51 (520)
Q Consensus 33 ~ghs~~~v~~g~~Iyi~GG 51 (520)
..|++++..++ .+|.+|-
T Consensus 182 ~~hs~alt~~G-~v~~wG~ 199 (406)
T 4d9s_A 182 AEHTAAVTEDG-DLYGWGW 199 (406)
T ss_dssp SSEEEEEETTS-CEEEEEC
T ss_pred CCeEEEEeCCC-CEEEeeC
Confidence 35777777665 5999984
No 289
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=29.61 E-value=5.3e+02 Score=27.33 Aligned_cols=110 Identities=5% Similarity=-0.088 Sum_probs=51.9
Q ss_pred CcEEEEECCCCeEEeecccCCCCCCCCC-c--eEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCC
Q 010011 110 RDLHILDTSSHTWISPSVRGEGPEAREG-H--SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (520)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~-h--s~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~ 186 (520)
..++.||+.+++-..+- .+........ . -....+++.++++..... .....+..+++++|+.+.+...+...
T Consensus 36 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~--~~r~~~~~~~~~~d~~~~~~~~l~~~-- 110 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVK--QWRHSYTASYDIYDLNKRQLITEERI-- 110 (740)
T ss_dssp TEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE--CSSSCEEEEEEEEETTTTEECCSSCC--
T ss_pred CcEEEEECCCCceEEEE-echhhhhhcccccceEECCCCCEEEEEECCee--eEEEccceEEEEEECCCCcEEEcccC--
Confidence 36899999888754432 1111111110 1 112234554444442110 01123357889999999887665421
Q ss_pred CCCCCcceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEee
Q 010011 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELN 233 (520)
Q Consensus 187 ~p~~r~~h~~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~ 233 (520)
+. ........-+++.++++- -++|++.|..+..-..+.
T Consensus 111 -~~-~~~~~~~SPdG~~la~~~-------~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 111 -PN-NTQWVTWSPVGHKLAYVW-------NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp -CT-TEEEEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECC
T ss_pred -CC-cceeeEECCCCCEEEEEE-------CCeEEEEECCCCceEEEc
Confidence 11 111222222444444431 135777777666544443
No 290
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=29.57 E-value=1.7e+02 Score=26.65 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=39.9
Q ss_pred EcCCCEEEEEcCcCCCCCCcCeEEEEECCCCeEEe--eeccCCCCC------CCCcceEEEE--CCEEEEEcCCCCCCCC
Q 010011 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ--PVIKGSPPT------PRDSHSCTTV--GENLYVFGGTDGMNPL 109 (520)
Q Consensus 40 v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~--l~~~g~~P~------~R~~hs~~~~--~~~iyv~GG~~~~~~~ 109 (520)
...++++|+|-| +.+|+||..+++... ..+....|. +..-.++... ++++|+|-|
T Consensus 124 ~~~~gk~yfFkG--------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG------- 188 (225)
T 3oyo_A 124 STKGKEVYLFKG--------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG------- 188 (225)
T ss_dssp CSSTTEEEEEET--------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------
T ss_pred ECCCCcEEEEeC--------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------
Confidence 344678999977 568999987766543 111101121 2233344443 789999987
Q ss_pred CcEEEEECC
Q 010011 110 RDLHILDTS 118 (520)
Q Consensus 110 ~~~~~yd~~ 118 (520)
+..|+||..
T Consensus 189 ~~ywr~d~~ 197 (225)
T 3oyo_A 189 QNYVRIDFT 197 (225)
T ss_dssp TEEEEEECC
T ss_pred CEEEEEeCC
Confidence 478999987
No 291
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=27.96 E-value=3.4e+02 Score=24.52 Aligned_cols=103 Identities=15% Similarity=0.212 Sum_probs=56.5
Q ss_pred ECCEEEEEcCCCCCCCCCcEEEEECCC----CeEEe----ecc-cCCCCCC--CCCceEEEE---CCEEEEEeCCCCCCC
Q 010011 93 VGENLYVFGGTDGMNPLRDLHILDTSS----HTWIS----PSV-RGEGPEA--REGHSAALV---GKRLFIFGGCGKSSN 158 (520)
Q Consensus 93 ~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~----~~~-~g~~p~~--r~~hs~~~~---~~~lyv~GG~~~~~~ 158 (520)
.++++|+|=| +.+|+||..+ ..... +.. -..+|.. ...--++.. ++++|+|-|
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG------ 135 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG------ 135 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET------
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC------
Confidence 4789999987 4689998643 22211 110 0012321 002223322 579999988
Q ss_pred CCCcceeceeEEEEcCcceEEE----cccCCCCC------CCCcceeEEe--eCCEEEEEecCCCCCcccCceEEEECC
Q 010011 159 TNDEVYYNDLYILNTETFVWKR----ATTSGNPP------SARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTD 225 (520)
Q Consensus 159 ~~~~~~~~~v~~~d~~t~~W~~----v~~~~~~p------~~r~~h~~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~ 225 (520)
+..|+||....+... +.. ..| .+..--++.. .++++|+|-| +..|+||..
T Consensus 136 -------~~yw~~d~~~~~~~~gPk~I~~--~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG--------~~ywr~d~~ 197 (225)
T 3oyo_A 136 -------NKYVRIAYDSKQLVGNIRNIGD--GFPVLNGTEFESGIDACFASHKEPEAYLFKG--------QNYVRIDFT 197 (225)
T ss_dssp -------TEEEEEETTTTEEEEEEEEHHH--HCGGGTTSTTTTCCSEEEECSSTTEEEEEET--------TEEEEEECC
T ss_pred -------CeEEEEECCCCeecCCCcchhh--cCCCcccccCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCC
Confidence 457899976554432 211 011 1222233344 3789999976 357889987
No 292
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=27.40 E-value=5.2e+02 Score=26.55 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeecccCCCCCCCCCceEEEECCEEEEEeCCCCCCCCCCcceeceeEEEEc
Q 010011 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (520)
Q Consensus 94 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~ 173 (520)
+++.++.||.+ ..+.++|+.+.+....-..+. ........+..++..++.++. ...+..+|+
T Consensus 250 dg~~l~s~s~D-----~~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~-----------d~~i~~~~~ 311 (611)
T 1nr0_A 250 DGTKIASASAD-----KTIKIWNVATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISA-----------NGFINFVNP 311 (611)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEET-----------TCCEEEEET
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeeeecCCC--CccceeEEEEEcCCEEEEEeC-----------CCcEEEEeC
Confidence 55667777654 458889998887654221111 011111223335555555553 134566777
Q ss_pred CcceEEEcccCCCCCCCCcceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 010011 174 ETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (520)
Q Consensus 174 ~t~~W~~v~~~~~~p~~r~~h~~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~ 232 (520)
.+..-.... .+ . ...-.+++. .+++.++.|+.++ .+..+|+.+.....+
T Consensus 312 ~~~~~~~~~-~g--h-~~~v~~l~~spdg~~l~s~s~D~------~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 312 ELGSIDQVR-YG--H-NKAITALSSSADGKTLFSADAEG------HINSWDISTGISNRV 361 (611)
T ss_dssp TTTEEEEEE-CC--C-SSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEC
T ss_pred CCCCcceEE-cC--C-CCCEEEEEEeCCCCEEEEEeCCC------cEEEEECCCCceeee
Confidence 665432221 00 0 011112222 2667777777653 478889888765443
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=27.00 E-value=4.4e+02 Score=25.52 Aligned_cols=148 Identities=17% Similarity=0.153 Sum_probs=73.5
Q ss_pred eEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe---EEeeeccCCCCCCCC-cceEEEE--CCEEEEEcCCCCCCC
Q 010011 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT---WSQPVIKGSPPTPRD-SHSCTTV--GENLYVFGGTDGMNP 108 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~---W~~l~~~g~~P~~R~-~hs~~~~--~~~iyv~GG~~~~~~ 108 (520)
..-+++...+.+||.+...- ..++++++.... |.. ..+.+..+. ..+++.. ++.|++..+
T Consensus 139 ~nDvavD~~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~---~~~~~~~~~G~nGIv~~pdg~~Liv~~~------ 204 (334)
T 2p9w_A 139 VVQSAQDRDGNSYVAFALGM-----PAIARVSADGKTVSTFAW---ESGNGGQRPGYSGITFDPHSNKLIAFGG------ 204 (334)
T ss_dssp EEEEEECTTSCEEEEEEESS-----CEEEEECTTSCCEEEEEE---CCCCSSSCCSCSEEEEETTTTEEEEESS------
T ss_pred CceeEECCCCCEEEeCCCCC-----CeEEEEeCCCCEEeeeee---cCCCcccccCcceEEEeCCCCEEEEEcC------
Confidence 33444444445999765321 458999987543 543 112222333 3455555 456777754
Q ss_pred CCcEEEEECCCCeEEeeccc--CCCCCCCCCc-e--EEEECCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEccc
Q 010011 109 LRDLHILDTSSHTWISPSVR--GEGPEAREGH-S--AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (520)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~h-s--~~~~~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~ 183 (520)
-..+++||+.+.....++.. |.. ....+. . ..-.+++++++.-. .+..+++-.... |+....
T Consensus 205 ~g~L~~fD~~~pv~~~v~~~~~G~~-~~~~~~dgilp~~~~G~vllV~~~-----------~~~~~~l~S~Dg-W~sa~~ 271 (334)
T 2p9w_A 205 PRALTAFDVSKPYAWPEPVKINGDF-GTLSGTEKIVTVPVGNESVLVGAR-----------APYAISFRSWDN-WKSANI 271 (334)
T ss_dssp SSSEEEEECSSSSCCCEECEESSCC-CCCTTEEEEEEEEETTEEEEEEEE-----------TTEEEEEECSST-TSEEEE
T ss_pred CCeEEEEcCCCCcceeecccccCCc-ccccCcccccccccCCEEEEEEcC-----------CCCEEEEECCCC-cceeEE
Confidence 25699999874322122221 211 011111 1 12257777444331 133444444444 877654
Q ss_pred CCCCCC---CCcceeEEe----eCCEEEEEecC
Q 010011 184 SGNPPS---ARDSHTCSS----WKNKIIVIGGE 209 (520)
Q Consensus 184 ~~~~p~---~r~~h~~~~----~~~~lyv~GG~ 209 (520)
.+..|. ++...+.++ .+++||+..+.
T Consensus 272 ~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 272 KKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp EEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred eeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 433333 333334444 57899998765
No 294
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=26.59 E-value=6.2e+02 Score=27.16 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=61.5
Q ss_pred eeceeEEEEcCc--ceEEEcccCCCCCCCCcceeEEeeCCEEEEEecCCC----CCcccCceEEEECCC--------CcE
Q 010011 164 YYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDG----HDYYLSDVHILDTDT--------LTW 229 (520)
Q Consensus 164 ~~~~v~~~d~~t--~~W~~v~~~~~~p~~r~~h~~~~~~~~lyv~GG~~~----~~~~~~~i~~yd~~t--------~~W 229 (520)
+.+.+|..+... ..|.++. .|. ...-....++.+|+....+- .+.....+...|..+ ..|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 340 (711)
T 4hvt_A 267 YNYDNYILDTKYKNLKLQKIN----MPS--DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSL 340 (711)
T ss_dssp SCEEEEEEECSSSSCEEEECC----SCT--TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTC
T ss_pred CceeEEEEcCCCCCCcceEee----cCC--cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccc
Confidence 347788887653 6788773 222 22223456899999764431 122456688888764 469
Q ss_pred EEeeCCCCCCCCCceeEEEEECCEEEEEecccCCCCccCcEEEEecCCCcEE
Q 010011 230 KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (520)
Q Consensus 230 ~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (520)
+.+-. .-..+.--.....++.+++..-... ...++++|+.++.|.
T Consensus 341 ~~~~~---~~~~~~l~~~~~~~~~l~~~~~~~~----~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 341 KILFT---PTANEVFNFISTTKDRVFLATYDNV----VAKVVTFTLENEQWT 385 (711)
T ss_dssp EEEEC---CCTTEEEEEEEECSSCEEEEEEETT----EEEEEEECEETTEEC
T ss_pred eEEEC---CCCCCeEEEEEEECCEEEEEEEECC----EEEEEEEECCCCceE
Confidence 87543 1122333344455677666543221 345899999888874
No 295
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=24.05 E-value=3.2e+02 Score=27.04 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=46.0
Q ss_pred EEcCCCEEEEEc---CcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEE-ECC--EEEEEcCCCCCCCCCcE
Q 010011 39 AIKGGRFLYVFG---GYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGE--NLYVFGGTDGMNPLRDL 112 (520)
Q Consensus 39 ~v~~g~~Iyi~G---G~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~--~iyv~GG~~~~~~~~~~ 112 (520)
+-.+++++|+.- +.+......+.++++|+.+.+-.+ ..+.+..-+++.. -++ .+|+.-+ ..+++
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~-----~i~vg~~~~~lavs~D~~~~ly~tn~-----~~~~V 356 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA-----KFEMGHEIDSINVSQDEKPLLYALST-----GDKTL 356 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-----EEEEEEEECEEEECSSSSCEEEEEET-----TTTEE
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE-----EEECCCCcceEEECCCCCeEEEEEcC-----CCCeE
Confidence 345788999963 222222345789999999987655 2222222233333 243 4777533 24689
Q ss_pred EEEECCCCeEEe
Q 010011 113 HILDTSSHTWIS 124 (520)
Q Consensus 113 ~~yd~~t~~W~~ 124 (520)
.+||..+++-..
T Consensus 357 sViD~~t~k~~~ 368 (386)
T 3sjl_D 357 YIHDAESGEELR 368 (386)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCcEEE
Confidence 999999987643
No 296
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.70 E-value=5.2e+02 Score=25.22 Aligned_cols=168 Identities=9% Similarity=0.013 Sum_probs=83.5
Q ss_pred EEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe-EEeeeccCCCCCCCCcceEEEE--CCEEEEEcCCCCCCCCCcEE
Q 010011 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT-WSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (520)
Q Consensus 37 ~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~-W~~l~~~g~~P~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~~ 113 (520)
.+...+++.||+....+. ..++++|..+.. ...+.... .+....-++++.. ++.||+.-. ...++
T Consensus 176 ia~~~~g~~l~~~d~~~~-----~~I~~~d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~------~~~I~ 243 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGT-----HTVYVYMKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS------NKNFG 243 (409)
T ss_dssp CEECTTSSEEEEEBSSTT-----CEEEEEEGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT------TCEEE
T ss_pred eeEecCCCcEEEEecCCC-----ceEEEEEcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC------CCcEE
Confidence 334445555665543211 268888886543 23321111 1011222334433 578998432 24799
Q ss_pred EEECCCCeEEeecccCCCCCCCCC-c-eEEEE--CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCC-CCC
Q 010011 114 ILDTSSHTWISPSVRGEGPEAREG-H-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-NPP 188 (520)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p~~r~~-h-s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~-~~p 188 (520)
+||+.+.........+........ + .++.. ++.||+.... .+.+++|+.... ...+.... ...
T Consensus 244 ~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------~~~I~~~~~~g~-~~~~~g~~~~~g 311 (409)
T 3hrp_A 244 RFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------LSSVYKITPDGE-CEWFCGSATQKT 311 (409)
T ss_dssp EEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------TTEEEEECTTCC-EEEEEECTTCCS
T ss_pred EEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------CCEEEEEecCCC-EEEEEeCCCCCC
Confidence 999988775544211111111222 1 44444 4789997542 356888887654 22222111 000
Q ss_pred C---------CCcceeEEee-CCEEEEEec-CCCCCcccCceEEEECCCCcEEEeeC
Q 010011 189 S---------ARDSHTCSSW-KNKIIVIGG-EDGHDYYLSDVHILDTDTLTWKELNT 234 (520)
Q Consensus 189 ~---------~r~~h~~~~~-~~~lyv~GG-~~~~~~~~~~i~~yd~~t~~W~~~~~ 234 (520)
. -..-..+++. ++.||+... . ...|.++|+.+.....+..
T Consensus 312 ~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 312 VQDGLREEALFAQPNGMTVDEDGNFYIVDGFK------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp CBCEEGGGCBCSSEEEEEECTTCCEEEEETTT------TCEEEEEETTTTEEEEEEE
T ss_pred cCCCcccccEeCCCeEEEEeCCCCEEEEeCCC------CCEEEEEECCCCEEEEEeC
Confidence 0 0111223332 567888853 2 2458899977777666543
No 297
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=20.54 E-value=1.6e+02 Score=31.29 Aligned_cols=140 Identities=13% Similarity=0.038 Sum_probs=73.2
Q ss_pred CCCccceEEEEEcCCCEEEEEcCcCCCCCCcCeEEEEECCCCe-EEe--e----eccCCCC-CCCCcceEEEECCEEEEE
Q 010011 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT-WSQ--P----VIKGSPP-TPRDSHSCTTVGENLYVF 100 (520)
Q Consensus 29 P~~R~ghs~~~v~~g~~Iyi~GG~~~~~~~~~~~~~yd~~t~~-W~~--l----~~~g~~P-~~R~~hs~~~~~~~iyv~ 100 (520)
|.+..-|.+...++|+++|+.+.. .+.+.+||..+.+ +.. + .+...++ -.+-.|.+..-++.+|+.
T Consensus 274 pvg~~PhGv~~sPDGk~v~V~~~~------s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t 347 (595)
T 1fwx_A 274 PIANNPHGCNMAPDKKHLCVAGKL------SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTS 347 (595)
T ss_dssp EEESSCCCEEECTTSSEEEEECTT------SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEE
T ss_pred ecCCCceEEEEcCCCCEEEEeCCC------CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEE
Confidence 445566999999999999988763 3678999998652 100 0 0001222 224445554445678877
Q ss_pred cCCCCCCCCCcEEEEECCC--------CeEEeecccCCCCCCCC-CceEEE-------ECCEEEEEeCCCCCCC-CCCcc
Q 010011 101 GGTDGMNPLRDLHILDTSS--------HTWISPSVRGEGPEARE-GHSAAL-------VGKRLFIFGGCGKSSN-TNDEV 163 (520)
Q Consensus 101 GG~~~~~~~~~~~~yd~~t--------~~W~~~~~~g~~p~~r~-~hs~~~-------~~~~lyv~GG~~~~~~-~~~~~ 163 (520)
-.. .+.+.++|..+ ..+..+. .++..-. +|..+. .+..||+.-+..++.. .-+..
T Consensus 348 ~~l-----dsqV~kwdi~~a~~~~~g~~~~~vi~---kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~ 419 (595)
T 1fwx_A 348 LFL-----DSQVVKWNIEDAIRAYAGEKVDPIKD---KLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPL 419 (595)
T ss_dssp ETT-----TTEEEEEEHHHHHHHHHTCSCCCEEE---EEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSS
T ss_pred Eec-----CCcEEEEEhhHhhhhhcccccceeEE---EeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCC
Confidence 433 35677777665 1132222 1111111 333332 2456888777543221 11111
Q ss_pred eeceeEEEEcCcceEEEcc
Q 010011 164 YYNDLYILNTETFVWKRAT 182 (520)
Q Consensus 164 ~~~~v~~~d~~t~~W~~v~ 182 (520)
--..-..||+...+-+.+.
T Consensus 420 ~~~~~ql~dis~~~m~lv~ 438 (595)
T 1fwx_A 420 KPENDQLIDISGDKMVLVH 438 (595)
T ss_dssp CCEEEEEEECSSSSCEEEE
T ss_pred CCCcceEEEcCCCcEEEEE
Confidence 1122367888776666554
No 298
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.33 E-value=3.1e+02 Score=27.44 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred eEEEEEcCCCEEEEE---cCcCCCCCCcCeEEEEECCCCeEEeeeccCCCCCCCCcceEEEE--CC-EEEEEcCCCCCCC
Q 010011 35 HTCNAIKGGRFLYVF---GGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GE-NLYVFGGTDGMNP 108 (520)
Q Consensus 35 hs~~~v~~g~~Iyi~---GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~-~iyv~GG~~~~~~ 108 (520)
+......+++++|+. ++.+......+.+.++|..+.+=.. ..|.+..-++++.- +. .+|+....
T Consensus 322 ~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~-----~I~vg~~P~gia~spDg~~~lyv~n~~----- 391 (426)
T 3c75_H 322 QQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN-----KIELGHEIDSINVSQDAEPLLYALSAG----- 391 (426)
T ss_dssp SCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-----EEEEEEEECEEEECCSSSCEEEEEETT-----
T ss_pred eeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEE-----EEECCCCcCeEEEccCCCEEEEEEcCC-----
Q ss_pred CCcEEEEECCCCeEEee-cccCCCC
Q 010011 109 LRDLHILDTSSHTWISP-SVRGEGP 132 (520)
Q Consensus 109 ~~~~~~yd~~t~~W~~~-~~~g~~p 132 (520)
.+++.++|+.+.+-... ...|..|
T Consensus 392 s~~VsVID~~t~kvv~tI~~vG~~P 416 (426)
T 3c75_H 392 TQTLHIYDAATGEELRSVDQLGRGP 416 (426)
T ss_dssp TTEEEEEETTTCCEEEEECCCSSSC
T ss_pred CCeEEEEECCCCCEEEEecCCCCCC
No 299
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=20.21 E-value=8.2e+02 Score=26.25 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=99.2
Q ss_pred eEEEEECCCCeEEeeeccC---CCCC---CCCcceEEEE----CCEEEEEcCCCC-CCCCCcEEEEECCCCeEEeecccC
Q 010011 61 QVHVFDTVNQTWSQPVIKG---SPPT---PRDSHSCTTV----GENLYVFGGTDG-MNPLRDLHILDTSSHTWISPSVRG 129 (520)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g---~~P~---~R~~hs~~~~----~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~g 129 (520)
.+|+-+-.-.+|+++...- .++. ........++ .+.+|+..|... ......+++-+-.-.+|+++....
T Consensus 44 gv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~ 123 (763)
T 3a0f_A 44 GTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPV 123 (763)
T ss_dssp CEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSS
T ss_pred cEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCc
Confidence 4787777788999975211 0021 1122222223 357888765311 111233443333346899876321
Q ss_pred CCC---CCCC-CceEEEE---CCEEEEEeCCCCCCCCCCcceeceeEEEEcCcceEEEcccCCCCCCC---Ccce-eEEe
Q 010011 130 EGP---EARE-GHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA---RDSH-TCSS 198 (520)
Q Consensus 130 ~~p---~~r~-~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~~~v~~~d~~t~~W~~v~~~~~~p~~---r~~h-~~~~ 198 (520)
..+ ..|. .+.+++. .+.+|+.+. ...+++-+-.-.+|+++.. ++.. .... .++.
T Consensus 124 ~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~------------~~~l~~S~DgG~TW~~~~~---~~~~~~~~~~~~~i~~ 188 (763)
T 3a0f_A 124 PMGANDMGRNGGERLAVNPHWTDELWFGSR------------TQGLWRSTDRAQTWSRMNQ---LPDSSTYGIGIISVIF 188 (763)
T ss_dssp CCCTTSTTTTSBCCEEECTTSTTCEEEECS------------SSCEEEESSTTSSCEECTT---SCCCSCTTTCEEEEEE
T ss_pred ccCccccCccccceEEECCCCCCEEEEEeC------------CCcEEEECCCCcCcccccc---CcccCCCccceEEEEE
Confidence 111 1222 2344443 256777532 1245554445679999873 2221 1122 2222
Q ss_pred e---CCEEEEEecCCCCCcccCceEEEECCCCcEEEeeCCCCCC-----------------CCCceeEEEEE-CCEEEEE
Q 010011 199 W---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL-----------------SPRAGHSTVAF-GKNLFVF 257 (520)
Q Consensus 199 ~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~~~~~~~~p-----------------~~R~~hs~~~~-~~~iyv~ 257 (520)
. .+.+|+.....+ .+++=+-.-.+|+.+...+... .++..+.++.. ++.+|+.
T Consensus 189 ~p~~~~~~~~~~~~~g------~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~ 262 (763)
T 3a0f_A 189 DPKNVGTAYVASHAVG------GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYIT 262 (763)
T ss_dssp CSSSTTCEEEEESSTT------CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEE
T ss_pred CCCCCCEEEEEEeCCC------eEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEE
Confidence 1 245666543211 2443333456799886411100 23334444333 5678887
Q ss_pred ecccC--CCCccCcEEEEecCCCcEEEeee
Q 010011 258 GGFTD--SQNLYDDLYMIDVDSGLWTKVIT 285 (520)
Q Consensus 258 GG~~~--~~~~~~dv~~yd~~~~~W~~l~~ 285 (520)
..... .......+++.+-...+|+.+.+
T Consensus 263 ~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 263 YSDAPGPWGVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp EESSCSSSCCCCEEEEEEETTTTEEEECCT
T ss_pred eccCCCCCCCcceeEEEEeCCCCceEECCC
Confidence 43210 00113468999888899999864
Done!