BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010014
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 244 bits (623), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 153/482 (31%), Positives = 248/482 (51%), Gaps = 36/482 (7%)
Query: 45 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 104
++F NR +NM+ I +G DMD+TL +Y + FESL YD +L YPEE+ ++ F+
Sbjct: 5 KVFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFN 64
Query: 105 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYA 164
+ +RGLV+D K GNILK+ R+ ++++YHG +++S ++ + Y + + +P+Y
Sbjct: 65 FDDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYV--DLGDPNYM 122
Query: 165 LIDTLFSLAEAYLFAQLVDFMDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAK 224
IDT FS+A L+ QLVD D NP K Y + +DV+ VD H DGTLK ++ K
Sbjct: 123 AIDTSFSIAFCILYGQLVDLKDTNP---DKMPSYQAIAQDVQYCVDKVHSDGTLKNIIIK 179
Query: 225 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDW 284
+ K Y+ ++ +V LK G+ F++TNS + Y+ +++++ S LD G W
Sbjct: 180 NLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYAL-SPFLDKG----EHW 234
Query: 285 LLYFDVVITGSAKPGFFHEDNR--------ANLFQV-GDISPGLLLKEKNGTCRIFQGGS 335
F+ VIT + KP FF+++ R + V G I PG ++QGG+
Sbjct: 235 QGLFEFVITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPG-----------VYQGGN 283
Query: 336 VGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXXXXXXXXXXXX 395
+ L + ++LY+GDHIYGDILR KK WRT
Sbjct: 284 AKKFTEDLGV-GGDEILYIGDHIYGDILRLKKDCNWRT----ALVVEELGEEIASQIRAL 338
Query: 396 XXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRE 455
E I+ ++ L + ID Q + + DL+ Q L +E
Sbjct: 339 PIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQ-QYDQEIHDLQLQISTVDLQISRLLQE 397
Query: 456 CHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKYYRPSEGFMPHEF 515
+ ++ W ++ + G + S FA+QV+RFAC+Y ++S+L +SP Y+R + + H+
Sbjct: 398 QNSFYNPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRANRRLLAHDI 457
Query: 516 EI 517
+I
Sbjct: 458 DI 459
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 241 bits (615), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 246/482 (51%), Gaps = 36/482 (7%)
Query: 45 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 104
++F NR +N + I +G D D+TL +Y + FESL YD +L YPEE+ ++ F+
Sbjct: 5 KVFVNRIINXRKIKLIGLDXDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFN 64
Query: 105 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYA 164
+ +RGLV+D K GNILK+ R+ ++++YHG +++S ++ + Y + + +P+Y
Sbjct: 65 FDDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYV--DLGDPNYX 122
Query: 165 LIDTLFSLAEAYLFAQLVDFMDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAK 224
IDT FS+A L+ QLVD D NP K Y + +DV+ VD H DGTLK ++ K
Sbjct: 123 AIDTSFSIAFCILYGQLVDLKDTNP---DKXPSYQAIAQDVQYCVDKVHSDGTLKNIIIK 179
Query: 225 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDW 284
+ K Y+ ++ +V LK G+ F++TNS + Y+ +++++ S LD G W
Sbjct: 180 NLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYAL-SPFLDKG----EHW 234
Query: 285 LLYFDVVITGSAKPGFFHEDNRANLFQVGDISPGLLLKEKNGTCR---------IFQGGS 335
F+ VIT + KP FF+++ R L + +NGT ++QGG+
Sbjct: 235 QGLFEFVITLANKPRFFYDNLRF-----------LSVNPENGTXTNVHGPIVPGVYQGGN 283
Query: 336 VGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXXXXXXXXXXXX 395
+ L + ++LY+GDHIYGDILR KK WRT
Sbjct: 284 AKKFTEDLGV-GGDEILYIGDHIYGDILRLKKDCNWRTA----LVVEELGEEIASQIRAL 338
Query: 396 XXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRE 455
E I+ ++ L + ID Q + + DL+ Q L +E
Sbjct: 339 PIEKKIGEAXAIKKELEQKYVDLCTRSIDESSQ-QYDQEIHDLQLQISTVDLQISRLLQE 397
Query: 456 CHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKYYRPSEGFMPHEF 515
+ ++ W ++ + G + S FA+QV+RFAC+Y ++S+L +SP Y+R + + H+
Sbjct: 398 QNSFYNPKWERVFRAGAEESYFAYQVDRFACIYXEKLSDLLEHSPXTYFRANRRLLAHDI 457
Query: 516 EI 517
+I
Sbjct: 458 DI 459
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 165/485 (34%), Positives = 242/485 (49%), Gaps = 46/485 (9%)
Query: 45 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 104
++F NRSL M+ I GFDMDYTLA YK +ESL ++ TV +LV +GYP+ELL +++D
Sbjct: 53 RVFVNRSLAMEKIKCFGFDMDYTLAVYKSPEYESLGFELTVERLV-SIGYPQELLSFAYD 111
Query: 105 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDY 163
+ RGLV D GN+LK+D + + V HGF + E E Y N I RD D +
Sbjct: 112 STFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERF 169
Query: 164 ALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHR 214
+++TLF+L E YL A LVDF N P S T Y M++DVR AVD H
Sbjct: 170 YILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY 229
Query: 215 DGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHT 273
G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H
Sbjct: 230 KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHG 288
Query: 274 LDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISPGLLLKEKNGTCR---I 330
G + + W YFD+++ + KP FF E L QV + L + G + +
Sbjct: 289 PKPG-SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKLKIGTYTGPLQHGIV 345
Query: 331 FQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXXXXXXX 390
+ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 346 YSGGSSDTICDLLGAK-GKDILYIGDHIFGDILKSKKRQGWRTF--------------LV 390
Query: 391 XXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQ 450
++ + +++ L L +D R D QR +++H
Sbjct: 391 IPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ERPDISSIQRRIKKVTHD 448
Query: 451 EAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKY-YRPSEG 509
C + + G L ++G + + FA QV R+A LY + NL LY P Y +R +
Sbjct: 449 MDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINL-LYYPFSYLFRAAHV 501
Query: 510 FMPHE 514
MPHE
Sbjct: 502 LMPHE 506
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 164/485 (33%), Positives = 242/485 (49%), Gaps = 46/485 (9%)
Query: 45 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 104
++F NRSL M+ I GF+MDYTLA YK +ESL ++ TV +LV +GYP+ELL +++D
Sbjct: 53 RVFVNRSLAMEKIKCFGFNMDYTLAVYKSPEYESLGFELTVERLV-SIGYPQELLSFAYD 111
Query: 105 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDY 163
+ RGLV D GN+LK+D + + V HGF + E E Y N I RD D +
Sbjct: 112 STFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERF 169
Query: 164 ALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHR 214
+++TLF+L E YL A LVDF N P S T Y M++DVR AVD H
Sbjct: 170 YILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY 229
Query: 215 DGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHT 273
G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H
Sbjct: 230 KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHG 288
Query: 274 LDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISPGLLLKEKNGTCR---I 330
G + + W YFD+++ + KP FF E L QV + L + G + +
Sbjct: 289 PKPG-SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKLKIGTYTGPLQHGIV 345
Query: 331 FQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXXXXXXX 390
+ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 346 YSGGSSDTICDLLGAK-GKDILYIGDHIFGDILKSKKRQGWRTF--------------LV 390
Query: 391 XXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQ 450
++ + +++ L L +D R D QR +++H
Sbjct: 391 IPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ERPDISSIQRRIKKVTHD 448
Query: 451 EAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKY-YRPSEG 509
C + + G L ++G + + FA QV R+A LY + NL LY P Y +R +
Sbjct: 449 MDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINL-LYYPFSYLFRAAHV 501
Query: 510 FMPHE 514
MPHE
Sbjct: 502 LMPHE 506
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 164/485 (33%), Positives = 242/485 (49%), Gaps = 46/485 (9%)
Query: 45 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 104
++F NRSL M+ I GF+MDYTLA YK +ESL ++ TV +LV +GYP+ELL +++D
Sbjct: 52 RVFVNRSLAMEKIKCFGFNMDYTLAVYKSPEYESLGFELTVERLV-SIGYPQELLSFAYD 110
Query: 105 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDY 163
+ RGLV D GN+LK+D + + V HGF + E E Y N I RD D +
Sbjct: 111 STFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERF 168
Query: 164 ALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHR 214
+++TLF+L E YL A LVDF N P S T Y M++DVR AVD H
Sbjct: 169 YILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY 228
Query: 215 DGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHT 273
G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H
Sbjct: 229 KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHG 287
Query: 274 LDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISPGLLLKEKNGTCR---I 330
G + + W YFD+++ + KP FF E L QV + L + G + +
Sbjct: 288 PKPG-SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKLKIGTYTGPLQHGIV 344
Query: 331 FQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXXXXXXX 390
+ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 345 YSGGSSDTICDLLGAK-GKDILYIGDHIFGDILKSKKRQGWRTF--------------LV 389
Query: 391 XXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQ 450
++ + +++ L L +D R D QR +++H
Sbjct: 390 IPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ERPDISSIQRRIKKVTHD 447
Query: 451 EAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKY-YRPSEG 509
C + + G L ++G + + FA QV R+A LY + NL LY P Y +R +
Sbjct: 448 MDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINL-LYYPFSYLFRAAHV 500
Query: 510 FMPHE 514
MPHE
Sbjct: 501 LMPHE 505
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 164/485 (33%), Positives = 241/485 (49%), Gaps = 46/485 (9%)
Query: 45 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 104
++F NRSL M+ I GF MDYTLA YK +ESL ++ TV +LV +GYP+ELL +++D
Sbjct: 53 RVFVNRSLAMEKIKCFGFXMDYTLAVYKSPEYESLGFELTVERLV-SIGYPQELLSFAYD 111
Query: 105 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDY 163
+ RGLV D GN+LK+D + + V HGF + E E Y N I RD D +
Sbjct: 112 STFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERF 169
Query: 164 ALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHR 214
+++TLF+L E YL A LVDF N P S T Y M++DVR AVD H
Sbjct: 170 YILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY 229
Query: 215 DGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHT 273
G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H
Sbjct: 230 KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHG 288
Query: 274 LDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISPGLLLKEKNGTCR---I 330
G + + W YFD+++ + KP FF E L QV + L + G + +
Sbjct: 289 PKPG-SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKLKIGTYTGPLQHGIV 345
Query: 331 FQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXXXXXXX 390
+ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 346 YSGGSSDTICDLLGAK-GKDILYIGDHIFGDILKSKKRQGWRTF--------------LV 390
Query: 391 XXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQ 450
++ + +++ L L +D R D QR +++H
Sbjct: 391 IPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ERPDISSIQRRIKKVTHD 448
Query: 451 EAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKY-YRPSEG 509
C + + G L ++G + + FA QV R+A LY + NL LY P Y +R +
Sbjct: 449 MDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINL-LYYPFSYLFRAAHV 501
Query: 510 FMPHE 514
MPHE
Sbjct: 502 LMPHE 506
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 72 KPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKY-MVRGLVLDKKRGNILKMDRHK-- 128
KP FES T + Y G+ + +LE S+D K+ + ++ ++ G +R +
Sbjct: 128 KPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQES 187
Query: 129 -YVKVAYHGFREMSKEEK 145
V+++ RE+SK K
Sbjct: 188 VIVEISKKQIRELSKHAK 205
>pdb|3W01|A Chain A, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W01|B Chain B, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|A Chain A, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|B Chain B, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
Length = 235
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 313 GDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 372
GD+S + E ++F GG + + + + + + VGD IY DI ++ K + +
Sbjct: 172 GDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIK 231
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 265 MNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFF 301
+ L G TLDG + D +FD TG PGFF
Sbjct: 478 LGTLSGIGTLDGFRHRHPDEAAFFDTASTGKTFPGFF 514
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,113,338
Number of Sequences: 62578
Number of extensions: 669200
Number of successful extensions: 1348
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 16
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)