Query 010014
Match_columns 520
No_of_seqs 155 out of 295
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 20:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 6E-148 1E-152 1179.0 32.1 441 46-517 1-446 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 6E-126 1E-130 955.1 24.0 447 30-517 38-494 (510)
3 TIGR02244 HAD-IG-Ncltidse HAD 100.0 1E-107 2E-112 844.5 32.0 340 46-396 1-342 (343)
4 KOG2469 IMP-GMP specific 5'-nu 100.0 2E-105 4E-110 823.8 24.5 413 39-490 9-424 (424)
5 TIGR01422 phosphonatase phosph 98.7 2.4E-07 5.3E-12 91.9 13.5 104 230-378 98-202 (253)
6 PRK13288 pyrophosphatase PpaX; 98.7 8.2E-07 1.8E-11 85.7 16.4 103 230-378 81-183 (214)
7 TIGR03351 PhnX-like phosphonat 98.5 1.9E-06 4.1E-11 83.4 14.2 107 231-380 87-194 (220)
8 PRK13478 phosphonoacetaldehyde 98.5 2.2E-06 4.7E-11 86.1 14.6 104 230-378 100-204 (267)
9 PRK10826 2-deoxyglucose-6-phos 98.5 5.5E-06 1.2E-10 80.6 16.7 104 230-379 91-194 (222)
10 PRK13222 phosphoglycolate phos 98.5 6.9E-06 1.5E-10 79.2 16.8 103 230-378 92-194 (226)
11 TIGR02253 CTE7 HAD superfamily 98.5 3.2E-07 7E-12 88.5 7.4 107 228-379 91-197 (221)
12 PLN02940 riboflavin kinase 98.4 4.1E-06 8.8E-11 89.2 15.1 98 231-377 93-194 (382)
13 PRK10725 fructose-1-P/6-phosph 98.3 1.8E-06 4E-11 81.1 8.1 95 236-377 92-186 (188)
14 PF13419 HAD_2: Haloacid dehal 98.2 2.6E-06 5.6E-11 77.3 6.7 104 227-376 73-176 (176)
15 TIGR01509 HAD-SF-IA-v3 haloaci 98.2 1.1E-05 2.3E-10 74.9 9.9 96 230-376 84-183 (183)
16 TIGR01428 HAD_type_II 2-haloal 98.2 4.4E-06 9.6E-11 79.6 7.3 98 232-379 93-194 (198)
17 PRK10563 6-phosphogluconate ph 98.1 2.9E-05 6.2E-10 75.3 12.5 96 229-377 86-186 (221)
18 KOG3085 Predicted hydrolase (H 98.1 1.8E-05 4E-10 79.1 10.1 101 226-377 109-213 (237)
19 PRK13226 phosphoglycolate phos 98.1 1.5E-05 3.2E-10 78.4 8.9 103 229-377 93-195 (229)
20 PLN02770 haloacid dehalogenase 98.0 1.3E-05 2.8E-10 80.0 7.2 102 230-377 107-208 (248)
21 TIGR01454 AHBA_synth_RP 3-amin 98.0 1.1E-05 2.4E-10 77.4 6.3 103 229-377 73-175 (205)
22 PRK09449 dUMP phosphatase; Pro 98.0 1.6E-05 3.4E-10 77.1 6.9 100 230-378 94-197 (224)
23 TIGR01449 PGP_bact 2-phosphogl 97.9 2.4E-05 5.2E-10 74.9 7.4 105 227-377 81-185 (213)
24 PRK09456 ?-D-glucose-1-phospha 97.9 8E-06 1.7E-10 78.3 4.1 99 232-379 85-187 (199)
25 PRK14988 GMP/IMP nucleotidase; 97.9 1.5E-05 3.2E-10 78.4 5.8 100 230-379 92-195 (224)
26 TIGR01662 HAD-SF-IIIA HAD-supe 97.9 4.5E-05 9.7E-10 68.2 8.3 101 227-378 21-132 (132)
27 PLN03243 haloacid dehalogenase 97.9 2E-05 4.3E-10 79.7 6.7 97 231-377 109-209 (260)
28 TIGR02252 DREG-2 REG-2-like, H 97.9 1.7E-05 3.7E-10 75.7 5.7 95 231-375 105-203 (203)
29 TIGR02247 HAD-1A3-hyp Epoxide 97.8 4.1E-05 8.9E-10 73.6 6.1 100 231-378 94-197 (211)
30 PLN02575 haloacid dehalogenase 97.7 0.00022 4.9E-09 76.1 11.8 103 231-379 216-318 (381)
31 TIGR01990 bPGM beta-phosphoglu 97.7 3.1E-05 6.7E-10 72.4 4.5 98 231-376 87-184 (185)
32 PRK13225 phosphoglycolate phos 97.7 6.3E-05 1.4E-09 76.7 7.1 102 230-380 141-242 (273)
33 PLN02919 haloacid dehalogenase 97.7 0.00073 1.6E-08 80.8 16.8 103 232-380 162-265 (1057)
34 TIGR02254 YjjG/YfnB HAD superf 97.7 7.6E-05 1.7E-09 71.7 6.9 104 230-379 96-200 (224)
35 PHA02597 30.2 hypothetical pro 97.7 9.7E-05 2.1E-09 70.4 7.5 101 230-379 73-176 (197)
36 PLN02779 haloacid dehalogenase 97.7 7.9E-05 1.7E-09 76.2 6.8 105 230-378 143-247 (286)
37 TIGR01993 Pyr-5-nucltdase pyri 97.6 7.7E-05 1.7E-09 70.3 5.3 102 230-376 83-184 (184)
38 COG1011 Predicted hydrolase (H 97.6 0.00012 2.6E-09 70.6 6.7 107 229-381 97-203 (229)
39 COG2179 Predicted hydrolase of 97.6 9.4E-05 2E-09 70.2 5.6 94 233-380 48-141 (175)
40 TIGR01691 enolase-ppase 2,3-di 97.6 0.00011 2.4E-09 72.7 6.0 103 231-380 95-199 (220)
41 TIGR02009 PGMB-YQAB-SF beta-ph 97.5 0.00018 3.9E-09 67.2 6.8 100 229-376 86-185 (185)
42 cd01427 HAD_like Haloacid deha 97.5 0.00024 5.2E-09 61.1 6.9 117 230-376 23-139 (139)
43 TIGR01668 YqeG_hyp_ppase HAD s 97.5 0.00016 3.5E-09 68.3 6.1 95 232-380 44-139 (170)
44 PRK13223 phosphoglycolate phos 97.5 0.00043 9.3E-09 70.2 8.9 103 230-378 100-202 (272)
45 TIGR01685 MDP-1 magnesium-depe 97.4 0.00021 4.6E-09 68.4 5.9 110 233-379 47-159 (174)
46 PRK11587 putative phosphatase; 97.4 0.00045 9.7E-09 67.2 7.2 98 230-378 82-183 (218)
47 PLN02811 hydrolase 97.3 0.00036 7.9E-09 68.0 6.3 97 233-378 80-185 (220)
48 PRK10748 flavin mononucleotide 97.3 0.00022 4.8E-09 70.6 4.4 95 230-379 112-210 (238)
49 PRK06698 bifunctional 5'-methy 97.2 0.00066 1.4E-08 73.8 6.4 99 231-378 330-428 (459)
50 TIGR01549 HAD-SF-IA-v1 haloaci 97.1 0.00088 1.9E-08 61.0 6.0 86 233-366 66-151 (154)
51 TIGR01261 hisB_Nterm histidino 97.1 0.0011 2.3E-08 62.6 6.4 107 229-378 27-148 (161)
52 COG0546 Gph Predicted phosphat 97.0 0.011 2.4E-07 57.9 12.4 103 229-377 87-189 (220)
53 TIGR01656 Histidinol-ppas hist 96.9 0.0036 7.8E-08 57.5 8.0 38 337-377 108-145 (147)
54 PRK06769 hypothetical protein; 96.9 0.0013 2.8E-08 62.4 5.2 39 338-379 101-139 (173)
55 PRK08942 D,D-heptose 1,7-bisph 96.9 0.0024 5.2E-08 60.4 6.9 108 232-378 30-148 (181)
56 TIGR01548 HAD-SF-IA-hyp1 haloa 96.7 0.0023 5.1E-08 61.1 5.1 86 236-367 111-196 (197)
57 KOG3109 Haloacid dehalogenase- 96.6 0.032 6.8E-07 55.5 12.4 114 225-380 94-208 (244)
58 TIGR01681 HAD-SF-IIIC HAD-supe 96.6 0.0029 6.4E-08 57.1 4.7 87 233-360 31-120 (128)
59 TIGR00213 GmhB_yaeD D,D-heptos 96.6 0.0064 1.4E-07 57.4 7.2 110 233-378 28-151 (176)
60 PRK11590 hypothetical protein; 96.3 0.036 7.7E-07 54.0 10.9 94 231-362 95-189 (211)
61 TIGR01664 DNA-3'-Pase DNA 3'-p 96.2 0.012 2.5E-07 55.8 6.4 36 224-259 35-70 (166)
62 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.2 0.00092 2E-08 67.3 -1.2 103 234-379 123-226 (257)
63 PRK11133 serB phosphoserine ph 96.0 0.21 4.7E-06 52.3 15.6 39 230-268 180-218 (322)
64 PRK05446 imidazole glycerol-ph 95.9 0.023 5.1E-07 60.3 7.7 110 230-378 29-149 (354)
65 smart00577 CPDc catalytic doma 95.6 0.044 9.5E-07 50.5 7.4 54 228-295 42-95 (148)
66 COG0637 Predicted phosphatase/ 95.4 0.21 4.5E-06 49.2 12.1 102 231-378 86-187 (221)
67 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.4 0.057 1.2E-06 50.9 7.6 108 232-375 81-188 (201)
68 TIGR00338 serB phosphoserine p 95.3 0.038 8.2E-07 53.3 6.4 39 230-268 84-122 (219)
69 TIGR01489 DKMTPPase-SF 2,3-dik 95.2 0.27 5.8E-06 45.7 11.6 51 230-294 71-121 (188)
70 TIGR01452 PGP_euk phosphoglyco 95.1 0.0037 7.9E-08 63.5 -1.5 37 339-377 211-247 (279)
71 TIGR01686 FkbH FkbH-like domai 95.0 0.11 2.5E-06 53.9 9.3 86 234-368 34-122 (320)
72 TIGR01459 HAD-SF-IIA-hyp4 HAD- 94.5 0.0073 1.6E-07 59.9 -1.1 101 234-377 141-241 (242)
73 PRK09552 mtnX 2-hydroxy-3-keto 94.2 0.29 6.3E-06 47.7 9.4 40 230-269 73-112 (219)
74 PF09419 PGP_phosphatase: Mito 93.9 0.23 4.9E-06 47.6 7.8 90 233-376 61-163 (168)
75 TIGR01493 HAD-SF-IA-v2 Haloaci 93.9 0.019 4.1E-07 53.3 0.5 81 231-367 90-174 (175)
76 PLN02954 phosphoserine phospha 93.5 0.45 9.8E-06 46.0 9.2 37 232-268 85-121 (224)
77 COG0647 NagD Predicted sugar p 93.5 0.43 9.4E-06 49.0 9.4 36 234-269 27-62 (269)
78 TIGR02726 phenyl_P_delta pheny 93.3 0.054 1.2E-06 51.7 2.5 82 238-374 41-122 (169)
79 TIGR01684 viral_ppase viral ph 93.3 0.17 3.7E-06 52.6 6.2 68 214-300 133-201 (301)
80 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.2 0.3 6.4E-06 46.4 7.4 36 233-268 89-124 (202)
81 PHA03398 viral phosphatase sup 92.5 0.26 5.7E-06 51.3 6.3 66 214-298 135-201 (303)
82 PHA02530 pseT polynucleotide k 92.5 0.2 4.3E-06 51.0 5.4 107 233-376 189-295 (300)
83 PF00702 Hydrolase: haloacid d 92.4 0.2 4.3E-06 47.3 4.9 82 233-366 129-212 (215)
84 TIGR03333 salvage_mtnX 2-hydro 92.3 0.86 1.9E-05 44.3 9.4 40 229-268 68-107 (214)
85 TIGR01670 YrbI-phosphatas 3-de 91.8 0.12 2.5E-06 48.1 2.5 85 239-379 36-120 (154)
86 PF13242 Hydrolase_like: HAD-h 91.5 0.14 3.1E-06 41.6 2.4 42 337-380 11-52 (75)
87 KOG2469 IMP-GMP specific 5'-nu 91.1 0.004 8.7E-08 66.4 -8.9 199 40-265 37-237 (424)
88 TIGR01459 HAD-SF-IIA-hyp4 HAD- 89.1 0.61 1.3E-05 46.3 5.1 50 232-295 25-77 (242)
89 PF06888 Put_Phosphatase: Puta 89.1 2.7 5.9E-05 42.3 9.7 115 231-375 71-195 (234)
90 PRK11009 aphA acid phosphatase 88.8 1.3 2.8E-05 44.7 7.2 67 217-295 100-170 (237)
91 TIGR01672 AphA HAD superfamily 88.1 1.4 3E-05 44.4 6.9 49 231-293 114-166 (237)
92 PRK13582 thrH phosphoserine ph 87.7 2.5 5.5E-05 40.1 8.2 37 231-268 68-104 (205)
93 PRK09484 3-deoxy-D-manno-octul 87.0 0.51 1.1E-05 45.1 3.0 80 238-372 55-134 (183)
94 TIGR01457 HAD-SF-IIA-hyp2 HAD- 86.3 0.52 1.1E-05 47.2 2.7 38 339-378 187-224 (249)
95 TIGR02250 FCP1_euk FCP1-like p 86.1 1.6 3.6E-05 41.0 5.8 43 225-268 52-94 (156)
96 PTZ00445 p36-lilke protein; Pr 85.2 1.2 2.7E-05 44.3 4.6 147 203-378 48-206 (219)
97 PF13344 Hydrolase_6: Haloacid 82.6 2 4.3E-05 37.3 4.4 36 233-268 16-51 (101)
98 TIGR02251 HIF-SF_euk Dullard-l 81.7 3 6.4E-05 39.2 5.5 55 225-293 36-90 (162)
99 PLN02645 phosphoglycolate phos 81.3 1 2.2E-05 46.7 2.5 37 339-377 239-275 (311)
100 TIGR01456 CECR5 HAD-superfamil 81.2 0.86 1.9E-05 47.5 1.9 29 349-378 264-292 (321)
101 TIGR01663 PNK-3'Pase polynucle 79.2 3.8 8.2E-05 46.0 6.2 36 223-258 189-224 (526)
102 TIGR01460 HAD-SF-IIA Haloacid 78.6 1.5 3.2E-05 43.6 2.5 38 338-377 196-234 (236)
103 TIGR01488 HAD-SF-IB Haloacid D 77.6 3.9 8.5E-05 37.6 4.9 37 232-268 74-110 (177)
104 TIGR01525 ATPase-IB_hvy heavy 77.5 3.5 7.5E-05 46.2 5.3 35 234-268 387-422 (556)
105 PF05152 DUF705: Protein of un 77.2 5 0.00011 41.7 5.9 65 225-303 136-200 (297)
106 PRK14988 GMP/IMP nucleotidase; 77.1 2.8 6E-05 41.2 4.0 43 52-97 5-48 (224)
107 PRK10444 UMP phosphatase; Prov 76.4 1.9 4.2E-05 43.4 2.7 38 339-378 183-220 (248)
108 TIGR02253 CTE7 HAD superfamily 76.1 3 6.6E-05 40.0 3.9 36 57-95 2-37 (221)
109 TIGR01512 ATPase-IB2_Cd heavy 76.1 3.8 8.1E-05 45.8 5.1 35 234-268 365-400 (536)
110 PLN03243 haloacid dehalogenase 74.0 3.5 7.5E-05 41.8 3.8 36 55-95 22-57 (260)
111 TIGR01993 Pyr-5-nucltdase pyri 74.0 4.5 9.8E-05 37.9 4.3 38 58-97 1-39 (184)
112 PRK10748 flavin mononucleotide 73.7 3.5 7.5E-05 40.8 3.6 33 54-88 7-39 (238)
113 TIGR01545 YfhB_g-proteo haloac 73.6 7 0.00015 38.3 5.7 37 232-268 95-132 (210)
114 PRK11587 putative phosphatase; 72.9 3.4 7.5E-05 40.0 3.3 35 56-96 2-36 (218)
115 PRK08238 hypothetical protein; 72.8 6.1 0.00013 43.8 5.6 36 233-268 74-109 (479)
116 PRK03669 mannosyl-3-phosphogly 72.2 3.9 8.5E-05 41.1 3.7 43 52-97 2-44 (271)
117 COG0731 Fe-S oxidoreductases [ 68.6 4.5 9.7E-05 42.3 3.2 26 233-258 94-120 (296)
118 PLN02645 phosphoglycolate phos 67.6 7.4 0.00016 40.3 4.7 47 214-268 35-81 (311)
119 PLN02770 haloacid dehalogenase 66.1 5.6 0.00012 39.6 3.3 36 54-95 19-54 (248)
120 TIGR01689 EcbF-BcbF capsule bi 66.0 11 0.00024 34.4 4.9 74 214-303 8-98 (126)
121 PLN02954 phosphoserine phospha 65.5 5.7 0.00012 38.3 3.1 25 349-375 170-194 (224)
122 PRK13582 thrH phosphoserine ph 64.6 5.6 0.00012 37.7 2.9 20 342-363 139-158 (205)
123 COG0561 Cof Predicted hydrolas 64.6 6.2 0.00013 39.2 3.3 40 56-98 2-41 (264)
124 PRK09449 dUMP phosphatase; Pro 64.2 6.3 0.00014 38.0 3.1 17 56-72 2-18 (224)
125 PF08645 PNK3P: Polynucleotide 63.7 6.5 0.00014 37.0 3.0 34 223-256 21-54 (159)
126 PF11019 DUF2608: Protein of u 63.6 29 0.00062 35.2 7.9 47 224-270 74-120 (252)
127 TIGR03752 conj_TIGR03752 integ 62.6 49 0.0011 36.8 9.8 76 377-461 68-144 (472)
128 PLN02779 haloacid dehalogenase 61.7 8.4 0.00018 39.5 3.7 36 55-95 38-73 (286)
129 TIGR01487 SPP-like sucrose-pho 61.7 7.8 0.00017 37.3 3.3 38 57-97 1-38 (215)
130 TIGR02009 PGMB-YQAB-SF beta-ph 59.6 9.8 0.00021 35.2 3.5 17 57-73 1-17 (185)
131 TIGR02252 DREG-2 REG-2-like, H 59.0 8.8 0.00019 36.4 3.1 32 58-95 1-32 (203)
132 PRK13225 phosphoglycolate phos 57.7 9 0.00019 39.2 3.1 44 44-95 51-94 (273)
133 TIGR01458 HAD-SF-IIA-hyp3 HAD- 56.9 14 0.0003 37.2 4.2 36 233-268 23-58 (257)
134 TIGR01689 EcbF-BcbF capsule bi 56.8 8.6 0.00019 35.2 2.5 15 58-72 2-16 (126)
135 PF08645 PNK3P: Polynucleotide 56.4 6 0.00013 37.2 1.4 17 58-74 1-17 (159)
136 PRK10884 SH3 domain-containing 55.9 73 0.0016 31.6 9.0 14 375-388 93-106 (206)
137 TIGR02254 YjjG/YfnB HAD superf 55.5 7.3 0.00016 37.2 1.9 18 57-74 1-18 (224)
138 PRK13226 phosphoglycolate phos 55.2 12 0.00025 36.8 3.3 34 56-95 11-44 (229)
139 TIGR00338 serB phosphoserine p 53.1 7.3 0.00016 37.4 1.5 31 340-373 161-191 (219)
140 smart00775 LNS2 LNS2 domain. T 52.8 17 0.00038 34.0 3.9 37 233-269 29-65 (157)
141 TIGR01457 HAD-SF-IIA-hyp2 HAD- 52.3 20 0.00043 35.9 4.5 35 234-268 20-54 (249)
142 PRK10530 pyridoxal phosphate ( 51.8 15 0.00033 36.3 3.6 37 56-95 2-38 (272)
143 PF10146 zf-C4H2: Zinc finger- 51.2 1.2E+02 0.0025 30.7 9.7 24 432-455 80-103 (230)
144 PRK13223 phosphoglycolate phos 50.6 14 0.00031 37.4 3.2 34 56-95 12-45 (272)
145 PF12710 HAD: haloacid dehalog 50.2 17 0.00038 33.6 3.5 35 234-268 92-126 (192)
146 TIGR01662 HAD-SF-IIIA HAD-supe 50.2 8.8 0.00019 33.9 1.4 13 58-70 1-13 (132)
147 TIGR01990 bPGM beta-phosphoglu 49.9 14 0.00031 34.1 2.9 31 59-95 1-31 (185)
148 TIGR02137 HSK-PSP phosphoserin 49.9 24 0.00052 34.4 4.5 37 231-268 68-104 (203)
149 TIGR01544 HAD-SF-IE haloacid d 49.7 1.2E+02 0.0027 31.4 9.9 39 230-268 120-158 (277)
150 PF12325 TMF_TATA_bd: TATA ele 48.3 1.4E+02 0.0031 27.1 8.9 46 370-415 11-57 (120)
151 PRK10444 UMP phosphatase; Prov 48.2 23 0.0005 35.7 4.2 36 233-268 19-54 (248)
152 COG1011 Predicted hydrolase (H 47.8 17 0.00037 34.8 3.1 23 54-76 1-23 (229)
153 PF14723 SSFA2_C: Sperm-specif 47.1 1.3E+02 0.0029 29.2 8.8 33 421-457 137-169 (179)
154 TIGR01449 PGP_bact 2-phosphogl 46.2 18 0.00038 34.4 2.9 30 60-95 1-30 (213)
155 PLN02575 haloacid dehalogenase 45.0 25 0.00054 38.0 4.1 36 56-96 130-165 (381)
156 PRK10513 sugar phosphate phosp 44.8 21 0.00046 35.4 3.4 37 56-95 2-38 (270)
157 TIGR01548 HAD-SF-IA-hyp1 haloa 44.5 20 0.00043 34.1 2.9 15 58-72 1-15 (197)
158 TIGR01675 plant-AP plant acid 43.8 28 0.00061 35.0 4.0 37 234-270 123-159 (229)
159 PF10146 zf-C4H2: Zinc finger- 43.6 1.8E+02 0.0039 29.4 9.7 23 431-453 65-87 (230)
160 TIGR01428 HAD_type_II 2-haloal 43.0 12 0.00027 35.2 1.3 17 57-73 1-17 (198)
161 PRK01158 phosphoglycolate phos 42.4 12 0.00026 36.1 1.2 13 57-69 3-15 (230)
162 PTZ00174 phosphomannomutase; P 42.4 13 0.00029 36.9 1.5 37 56-95 4-40 (247)
163 PRK00192 mannosyl-3-phosphogly 41.3 28 0.00061 35.0 3.7 36 57-95 4-39 (273)
164 PF06941 NT5C: 5' nucleotidase 41.0 13 0.00029 35.4 1.2 29 231-259 73-101 (191)
165 TIGR00685 T6PP trehalose-phosp 40.8 24 0.00052 35.1 3.0 30 337-368 173-202 (244)
166 TIGR01684 viral_ppase viral ph 40.8 16 0.00034 38.4 1.7 48 51-100 120-169 (301)
167 COG0560 SerB Phosphoserine pho 39.9 45 0.00098 32.8 4.7 39 230-268 76-114 (212)
168 TIGR01491 HAD-SF-IB-PSPlk HAD- 39.8 15 0.00032 34.4 1.3 17 57-73 4-20 (201)
169 TIGR02247 HAD-1A3-hyp Epoxide 39.7 15 0.00033 35.0 1.4 16 57-72 2-17 (211)
170 TIGR02338 gimC_beta prefoldin, 39.2 2.7E+02 0.0058 24.5 9.5 82 377-461 2-109 (110)
171 PLN02423 phosphomannomutase 39.0 31 0.00068 34.5 3.5 34 55-90 4-38 (245)
172 COG4359 Uncharacterized conser 38.8 2.7E+02 0.0059 27.7 9.6 58 210-270 55-112 (220)
173 KOG2882 p-Nitrophenyl phosphat 37.8 28 0.00061 36.5 3.0 57 330-387 220-279 (306)
174 TIGR01533 lipo_e_P4 5'-nucleot 37.1 45 0.00098 34.3 4.4 36 233-268 120-155 (266)
175 TIGR01672 AphA HAD superfamily 36.7 17 0.00037 36.6 1.2 14 59-72 65-78 (237)
176 PRK10976 putative hydrolase; P 36.4 18 0.00038 36.0 1.3 13 57-69 2-14 (266)
177 PF00702 Hydrolase: haloacid d 36.4 17 0.00038 34.0 1.2 17 57-73 1-17 (215)
178 PF09949 DUF2183: Uncharacteri 36.2 62 0.0013 28.4 4.5 20 250-269 2-21 (100)
179 TIGR02461 osmo_MPG_phos mannos 35.8 32 0.0007 33.9 3.0 33 59-95 1-33 (225)
180 PF03031 NIF: NLI interacting 35.6 40 0.00087 30.8 3.4 42 227-269 32-73 (159)
181 TIGR01509 HAD-SF-IA-v3 haloaci 34.6 13 0.00029 34.0 0.0 16 59-74 1-16 (183)
182 PF13304 AAA_21: AAA domain; P 34.5 13 0.00028 34.5 -0.1 38 221-258 261-300 (303)
183 PF12689 Acid_PPase: Acid Phos 34.3 20 0.00043 34.4 1.2 11 58-68 4-14 (169)
184 COG5610 Predicted hydrolase (H 34.2 1E+02 0.0022 34.5 6.6 114 225-382 92-207 (635)
185 TIGR02463 MPGP_rel mannosyl-3- 33.7 44 0.00095 32.1 3.5 26 336-363 184-209 (221)
186 TIGR01493 HAD-SF-IA-v2 Haloaci 32.7 18 0.0004 33.2 0.7 15 59-73 1-15 (175)
187 PF13419 HAD_2: Haloacid dehal 32.3 23 0.0005 31.5 1.2 31 60-95 1-31 (176)
188 TIGR01452 PGP_euk phosphoglyco 31.9 45 0.00098 33.8 3.4 25 233-257 20-44 (279)
189 COG0561 Cof Predicted hydrolas 31.9 50 0.0011 32.7 3.7 35 234-268 23-57 (264)
190 KOG2914 Predicted haloacid-hal 31.5 57 0.0012 32.7 4.0 102 234-378 95-197 (222)
191 KOG2961 Predicted hydrolase (H 31.5 34 0.00074 32.8 2.2 46 333-379 121-169 (190)
192 PF00038 Filament: Intermediat 31.4 3.9E+02 0.0084 27.3 10.2 62 393-460 228-289 (312)
193 TIGR01482 SPP-subfamily Sucros 31.2 32 0.0007 32.9 2.1 33 60-95 1-33 (225)
194 COG0560 SerB Phosphoserine pho 31.1 36 0.00079 33.5 2.5 15 56-70 4-18 (212)
195 PRK15126 thiamin pyrimidine py 31.0 25 0.00053 35.2 1.3 13 57-69 2-14 (272)
196 COG1579 Zn-ribbon protein, pos 30.9 2.3E+02 0.005 28.9 8.2 81 380-460 94-176 (239)
197 TIGR01549 HAD-SF-IA-v1 haloaci 30.7 36 0.00078 30.6 2.2 13 60-72 2-14 (154)
198 PF13851 GAS: Growth-arrest sp 30.5 3.9E+02 0.0085 26.2 9.6 43 396-448 87-129 (201)
199 COG1907 Predicted archaeal sug 29.7 90 0.002 32.8 5.1 43 443-485 244-286 (312)
200 TIGR01460 HAD-SF-IIA Haloacid 29.4 71 0.0015 31.6 4.3 35 234-268 17-51 (236)
201 TIGR01484 HAD-SF-IIB HAD-super 28.5 64 0.0014 30.5 3.6 36 232-267 18-53 (204)
202 PLN02887 hydrolase family prot 28.4 60 0.0013 37.1 3.9 38 56-96 307-344 (580)
203 PHA03398 viral phosphatase sup 28.3 28 0.0006 36.6 1.2 44 53-99 124-170 (303)
204 TIGR01454 AHBA_synth_RP 3-amin 28.1 43 0.00093 31.8 2.4 13 60-72 1-13 (205)
205 cd05014 SIS_Kpsf KpsF-like pro 28.0 54 0.0012 28.6 2.8 26 233-258 60-85 (128)
206 COG4850 Uncharacterized conser 27.7 87 0.0019 33.5 4.6 38 234-271 199-237 (373)
207 PF04111 APG6: Autophagy prote 27.7 5.5E+02 0.012 27.0 10.7 39 378-416 46-85 (314)
208 TIGR02417 fruct_sucro_rep D-fr 26.7 70 0.0015 32.3 3.8 68 42-111 238-327 (327)
209 PRK09552 mtnX 2-hydroxy-3-keto 26.2 39 0.00084 32.7 1.7 30 339-371 152-181 (219)
210 PF02358 Trehalose_PPase: Treh 25.8 43 0.00093 32.9 2.0 29 62-90 2-30 (235)
211 TIGR01670 YrbI-phosphatas 3-de 25.7 34 0.00074 31.6 1.1 14 57-70 1-14 (154)
212 PF09802 Sec66: Preprotein tra 25.5 3.1E+02 0.0067 27.0 7.7 12 458-469 135-146 (190)
213 TIGR02463 MPGP_rel mannosyl-3- 24.9 80 0.0017 30.3 3.6 33 236-268 21-53 (221)
214 KOG1937 Uncharacterized conser 24.6 1.2E+02 0.0026 33.6 5.1 41 433-473 403-443 (521)
215 TIGR02137 HSK-PSP phosphoserin 24.2 30 0.00064 33.8 0.5 12 59-70 3-14 (203)
216 TIGR01511 ATPase-IB1_Cu copper 24.2 76 0.0017 35.8 3.8 35 234-268 408-442 (562)
217 TIGR00255 conserved hypothetic 23.6 3E+02 0.0065 28.8 7.7 32 380-411 205-236 (291)
218 PRK09484 3-deoxy-D-manno-octul 23.6 39 0.00085 32.1 1.2 18 54-71 18-35 (183)
219 PF04111 APG6: Autophagy prote 23.5 4.9E+02 0.011 27.3 9.4 23 434-456 107-129 (314)
220 PRK06698 bifunctional 5'-methy 23.4 60 0.0013 35.5 2.7 16 57-72 241-256 (459)
221 PRK11820 hypothetical protein; 23.3 3.1E+02 0.0067 28.6 7.7 32 380-411 202-233 (288)
222 PF07106 TBPIP: Tat binding pr 23.1 5E+02 0.011 24.4 8.6 82 347-451 53-134 (169)
223 PF10018 Med4: Vitamin-D-recep 22.6 4.9E+02 0.011 25.1 8.5 11 477-487 89-99 (188)
224 PF11932 DUF3450: Protein of u 22.5 5.7E+02 0.012 25.6 9.4 19 438-456 96-114 (251)
225 COG0241 HisB Histidinol phosph 22.5 80 0.0017 30.8 3.0 27 229-255 23-55 (181)
226 PF03767 Acid_phosphat_B: HAD 21.9 71 0.0015 31.8 2.7 37 234-270 118-154 (229)
227 PF15342 FAM212: FAM212 family 21.9 38 0.00082 27.2 0.5 22 342-363 31-52 (62)
228 TIGR00099 Cof-subfamily Cof su 21.7 1.1E+02 0.0023 30.2 3.9 35 233-267 18-52 (256)
229 COG4308 LimA Limonene-1,2-epox 21.7 24 0.00051 32.3 -0.7 11 280-290 109-119 (130)
230 TIGR03185 DNA_S_dndD DNA sulfu 21.6 4.7E+02 0.01 30.1 9.5 37 378-414 212-249 (650)
231 TIGR01664 DNA-3'-Pase DNA 3'-p 21.6 53 0.0012 30.9 1.6 17 56-72 12-28 (166)
232 TIGR01680 Veg_Stor_Prot vegeta 21.2 1.2E+02 0.0027 31.5 4.2 36 235-270 149-184 (275)
233 COG3883 Uncharacterized protei 21.1 4.1E+02 0.009 27.5 7.9 42 430-475 77-118 (265)
234 PF14257 DUF4349: Domain of un 20.9 5.9E+02 0.013 25.5 9.1 57 392-456 136-192 (262)
235 PF08654 DASH_Dad2: DASH compl 20.6 3.3E+02 0.0071 24.2 6.3 22 462-486 52-73 (103)
236 PRK10187 trehalose-6-phosphate 20.5 60 0.0013 32.9 1.8 35 54-88 11-45 (266)
237 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.5 89 0.0019 27.1 2.7 26 234-259 60-85 (126)
238 PF00834 Ribul_P_3_epim: Ribul 20.2 2.6E+02 0.0057 27.4 6.2 51 234-302 92-142 (201)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=6.1e-148 Score=1178.98 Aligned_cols=441 Identities=45% Similarity=0.756 Sum_probs=354.9
Q ss_pred eEEeCcccCCCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccceeeecCCCcEEeec
Q 010014 46 IFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGLVLDKKRGNILKMD 125 (520)
Q Consensus 46 VF~Nr~L~L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGLv~D~~~GnlLKlD 125 (520)
|||||+|+|++|+|||||||||||+|++++++.|||++++++||+++|||++|++++|||+|+|||||+|+++|||||||
T Consensus 1 VF~Nr~l~l~~i~~iGFDmDyTLa~Y~~~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGL~~D~~~GnlLKld 80 (448)
T PF05761_consen 1 VFVNRSLNLKDIDVIGFDMDYTLARYKSPELEELIYELARERLVEEKGYPEELLNLEYDPDFAIRGLVIDKERGNLLKLD 80 (448)
T ss_dssp -EESS-EECCC--EEEE-TBTTTBEE-CCHHHHHHHHHHHHHHHHHTT--GGGGG----CCC--TTEEEETTTTEEEEEB
T ss_pred CeeCCccccccCCEEEECcccchhhcCHHHHHHHHHHHHHHHHHhccCCCHHHhCCCCchhhhhcceeeEcccCeEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccCccCCHHHHHHHhcCccccccCCCCceeeeccccchHHHHHHHHHHHHHh--cCCCCCCCCCChHHHHH
Q 010014 126 RHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMD--NNPGKDSKSTDYVRMYK 203 (520)
Q Consensus 126 ~~g~I~~a~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~~ldtlFslpe~~L~a~lVd~~d--~~~~~~~~~~~y~~l~~ 203 (520)
++|+|++|+||+++|+.|||+++||+++++.++.. +|..++|+||+||+|||||+||+|+ .+.. ..+|.+||+
T Consensus 81 ~~g~I~~a~hG~~~l~~eei~~~Y~~~~i~~~~~~-~~~~l~tlFslpe~~L~a~lvd~~d~~~~~~----~~~~~~l~~ 155 (448)
T PF05761_consen 81 RFGYILRAYHGFRPLSDEEIRELYGNKFIPLSDDS-RFFQLNTLFSLPEAYLFAQLVDYFDVEDGNI----EYDYRSLYQ 155 (448)
T ss_dssp TTSBEEEEEETTEEE-HHHHCCCCTTSB--TTSTT-TEEEE-SCCHHHHHHHHHHHHHHHHECCTTC----CEEHHHHHH
T ss_pred CCCcEEEEEeccccCCHHHHHHhcCCcccccchhh-HHHHHhhHhhhhHHHHHHHHHHHhhcccCCC----CCCHHHHHH
Confidence 99999999999999999999999999999764333 8999999999999999999999999 4333 247999999
Q ss_pred HHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCC
Q 010014 204 DVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSD 283 (520)
Q Consensus 204 DV~~Avd~~H~~G~lk~~v~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~d 283 (520)
||++||++||.+|.||++|++||+|||+|+|+|++||++||++||||||||||+|+|||.+|+|++|+++ +.++|
T Consensus 156 DV~~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~-----~~~~d 230 (448)
T PF05761_consen 156 DVRDAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFL-----GEDPD 230 (448)
T ss_dssp HHHHHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCS-----STTT-
T ss_pred HHHHHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCC-----CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999765 45569
Q ss_pred CccCccEEEECCCCCCCccCCCCccceeeccCCC--cccc-ccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccc
Q 010014 284 WLLYFDVVITGSAKPGFFHEDNRANLFQVGDISP--GLLL-KEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYG 360 (520)
Q Consensus 284 Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~~~--~~~~-~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~ 360 (520)
||+|||||||+|+||+||++++ ||++|++.++ .++. +++|++|+||+|||+++|++++|| +|++||||||||||
T Consensus 231 W~dlFDvVIv~A~KP~FF~~~~--pfr~vd~~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~-~g~~VLY~GDhi~~ 307 (448)
T PF05761_consen 231 WRDLFDVVIVDARKPGFFTEGR--PFREVDTETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGW-RGKEVLYFGDHIYG 307 (448)
T ss_dssp GGGCECEEEES--CCHHHCT-----EEEEETTTSSEECS---SS--TC-EEEE--HHHHHHHCT---GGGEEEEESSTTT
T ss_pred hhhheeEEEEcCCCCcccCCCC--ceEEEECCCCccccccccccccCCCEeecCCHHHHHHHHcc-CCCeEEEECCchhh
Confidence 9999999999999999999964 7999986544 3555 789999999999999999999999 79999999999999
Q ss_pred cccccccccCceEEEeehhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCChHHHHHhhhHHHHHHH
Q 010014 361 DILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEY 440 (520)
Q Consensus 361 Dil~skk~~gWrT~~IVpELe~Ei~i~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 440 (520)
||++||+.+||||+|||||||+||++|++.++.+++|+.|+.+++++++.+++++. .++++.
T Consensus 308 Di~~~k~~~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~------------------~~~~~~ 369 (448)
T PF05761_consen 308 DILKSKKRHGWRTAAIIPELEQEIEIWNSKKYRFEELQELEELLEELQDHLDQLRS------------------SSELRP 369 (448)
T ss_dssp THHHHHHHH-SEEEEE-TTHHHHHHHHHHTHHHHHHHHHHHHHCHHHHCHHHHHHH------------------HHHHHH
T ss_pred hhhhhccccceEEEEEehhhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHhccccc------------------chhhHH
Confidence 99999999999999999999999999999999999999999999999887765431 223334
Q ss_pred HHHHHHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhccccccccccccccccCCCCcccccCCCCCCCCcCC
Q 010014 441 QRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKYYRPSEGFMPHEFEI 517 (520)
Q Consensus 441 ~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S~Fa~qv~RyAdlYtS~v~NLl~Ys~~~~Fr~~~~~mpHE~~~ 517 (520)
.+++++++++++.+++++.|||+|||+||||+++|+||+||+||||||||+|+||++|||+++|||++++||||+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~fn~~~GslfRtg~~~s~Fa~qv~RyAdlYtS~v~Nll~y~~~~~Fr~~~~~lpHE~~~ 446 (448)
T PF05761_consen 370 DISELRKERRELRREMKELFNPQFGSLFRTGHNPSYFARQVERYADLYTSSVSNLLNYSPNYYFRPPRDLLPHESTV 446 (448)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-TTT-BSSEETTEEBHHHHHHHHH-SEEESSHHHHHHS-TT-EE-------CCG---
T ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHhcCCCccHHHHHHHHHhhhhhccccHHHhCCcceEEeCCCCCCCCCCCC
Confidence 44445555555556667999999999999999999999999999999999999999999999999999999999975
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.8e-126 Score=955.07 Aligned_cols=447 Identities=30% Similarity=0.519 Sum_probs=412.5
Q ss_pred eecCCCCCCCCCCCCceEEeCcccCCCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccc
Q 010014 30 IWASPGGARKIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMV 109 (520)
Q Consensus 30 ~~~~~~~~~~~~~~~~VF~Nr~L~L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~i 109 (520)
-.+.|+..+...+|++||+|++++|++|++||||||||||+|.+ .++.|||+++++.||+++.||+.|+.++|||+|+|
T Consensus 38 ~l~ip~~i~sllnp~aiy~nne~sl~dievygfdydytla~ys~-hlh~lif~~ard~lvn~frYPe~i~q~eYdPnFaI 116 (510)
T KOG2470|consen 38 FLNIPEAINSLLNPQAIYVNNELSLDDIEVYGFDYDYTLAHYSS-HLHSLIFDLARDHLVNEFRYPEVIRQYEYDPNFAI 116 (510)
T ss_pred ccCCCHHHHhccChhheeecCcccccceeEeccccchhHHHHHH-HHHHHHHHHHHHHHHHhccChHHhhhcccCCCccc
Confidence 45678888899999999999999999999999999999999996 68999999999999999999999999999999999
Q ss_pred cceeeecCCCcEEeecCCCcEEE--EeccCccCCHHHHHHHhcCcccccc----CCC--CceeeeccccchHHHHHHHHH
Q 010014 110 RGLVLDKKRGNILKMDRHKYVKV--AYHGFREMSKEEKVEAYGNTLIRDA----FDE--PDYALIDTLFSLAEAYLFAQL 181 (520)
Q Consensus 110 RGLv~D~~~GnlLKlD~~g~I~~--a~hG~~~ls~eEi~~~Y~~~~i~~~----~~~--~~~~~ldtlFslpe~~L~a~l 181 (520)
|||++|+++|.|+|+|+||+|+. ||+|.+.++++||.++||+.+|+.. |.+ +....+.++||+||+||+||+
T Consensus 117 RGLhYDv~kglLmKlDaF~~iqlgt~YrGr~kv~~eEvi~mY~~rhipl~q~~g~~~k~~~mvqlmDiFs~pEmcLls~v 196 (510)
T KOG2470|consen 117 RGLHYDVQKGLLMKLDAFHYIQLGTVYRGRRKVPDEEVIEMYGGRHIPLDQMSGFYGKGSKMVQLMDIFSLPEMCLLSCV 196 (510)
T ss_pred chhhhHhhhhhheeeccceeeccCceeecCccCCHHHHHHHhcCCccCHHHhcCccCCCchHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999999995 9999999999999999999999732 222 334456669999999999999
Q ss_pred HHHHhcCCCCCCCCCChHHHHHHHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhh
Q 010014 182 VDFMDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYT 261 (520)
Q Consensus 182 Vd~~d~~~~~~~~~~~y~~l~~DV~~Avd~~H~~G~lk~~v~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt 261 (520)
|+||..++.++. ...+|+||++||..||+.|.+ +|.+|.||||.++|++..+|++|+.+|||+||||||+|+|+
T Consensus 197 veYF~~~~lefd----~~~ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi~r~~ql~~fl~kL~~~GKklFLiTNSPysFV 270 (510)
T KOG2470|consen 197 VEYFLDNKLEFD----PSHLYKDVNDAIRDVHRKGHM--KIESDLEKYIERNPQLLAFLRKLKDHGKKLFLITNSPYSFV 270 (510)
T ss_pred HHHHHhccccCC----HHHHHHhHHHHHHHhhhhhhH--HHhhchHHHhhccHHHHHHHHHHHHhcCcEEEEeCCchhhh
Confidence 999999998874 479999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeeccC--CCccccccCCCCCceecCCCHHHH
Q 010014 262 TIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDI--SPGLLLKEKNGTCRIFQGGSVGHL 339 (520)
Q Consensus 262 ~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~--~~~~~~~~~l~~g~vY~gGn~~~l 339 (520)
|.+|+|++| +|||++||||||+|+||.||++.. .|++..+.. +..|+++.+|++|+||.+||+.+|
T Consensus 271 d~GM~flvG-----------~~WRdlFDVVIvqA~KP~Fftde~-rPfR~~dek~~sl~wdkv~klekgkiYy~G~l~~f 338 (510)
T KOG2470|consen 271 DKGMRFLVG-----------DDWRDLFDVVIVQANKPEFFTDER-RPFRKYDEKRGSLLWDKVDKLEKGKIYYQGNLKSF 338 (510)
T ss_pred hcCceeeeC-----------ccHHhhhheeEEecCCCccccccc-CcchhhcccccchhhhhhhhcccCceeeeccHHHH
Confidence 999999999 899999999999999999999954 345544432 456999999999999999999999
Q ss_pred HHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 010014 340 HKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLK 419 (520)
Q Consensus 340 ~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpELe~Ei~i~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~ 419 (520)
.+++|| +|++|||||||+|||+.++...+||||+|||||||+||+++|+. +++.+..||+.++..||+.-.
T Consensus 339 lelt~W-rG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~N~e-~y~~s~~w~q~lt~Ller~q~------- 409 (510)
T KOG2470|consen 339 LELTGW-RGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQNTE-QYRFSQTWLQILTGLLERMQA------- 409 (510)
T ss_pred HHHhcc-CCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHh-------
Confidence 999999 89999999999999999999999999999999999999999985 578899999999999987432
Q ss_pred cCCCChHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhccccccccccccccccCC
Q 010014 420 SEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYS 499 (520)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S~Fa~qv~RyAdlYtS~v~NLl~Ys 499 (520)
...++.+++|++|.+||+++|+.++ ++||.+|||+|||.++||+|++++.||||||||+++|||+|+
T Consensus 410 ------~rseasq~~L~ew~~eRq~lR~~tK-------~~FN~qFGs~FrT~~nptyFsrrl~rfaDiYts~lsnlL~y~ 476 (510)
T KOG2470|consen 410 ------QRSEASQSVLDEWMKERQELRDTTK-------QMFNAQFGSTFRTDHNPTYFSRRLHRFADIYTSSLSNLLNYR 476 (510)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhcceeeccCCccHHHHHHHHHHHHHhccHHHHHhcC
Confidence 1123467899999999999999987 679999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCcCC
Q 010014 500 PDKYYRPSEGFMPHEFEI 517 (520)
Q Consensus 500 ~~~~Fr~~~~~mpHE~~~ 517 (520)
+.|+|+|+|++||||..+
T Consensus 477 ~~htfYprr~~mpHe~~~ 494 (510)
T KOG2470|consen 477 VEHTFYPRRTPMPHEVPV 494 (510)
T ss_pred cccccCCcCCCCcccccc
Confidence 999999999999999865
No 3
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=9.5e-108 Score=844.55 Aligned_cols=340 Identities=46% Similarity=0.780 Sum_probs=315.4
Q ss_pred eEEeCcccCCCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccceeeecCCCcEEeec
Q 010014 46 IFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGLVLDKKRGNILKMD 125 (520)
Q Consensus 46 VF~Nr~L~L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGLv~D~~~GnlLKlD 125 (520)
|||||+|+|++|+|||||||||||+|+++++|.|||++++++||+.+|||++|++++|||+|+||||++|+++|||||||
T Consensus 1 if~nr~l~l~~i~~~GFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYp~~l~~~~~d~~f~iRGL~~D~~~GnllKld 80 (343)
T TIGR02244 1 VFVNRELNLEKIQVFGFDMDYTLAQYKSPELEALIYDLAKERLVKRFGYPEELLSFAYDPTFAIRGLVFDKLKGNLLKLD 80 (343)
T ss_pred CeeCCccccccCCEEEECccccccccChHHHHHHHHHHHHHHHHHhcCCChHHhCCcCCCcccccceeeEcccCeEEEEc
Confidence 89999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred CCCcEEEEeccCccCCHHHHHHHhcCccccccCCCCceeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHH
Q 010014 126 RHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKSTDYVRMYKDV 205 (520)
Q Consensus 126 ~~g~I~~a~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~~ldtlFslpe~~L~a~lVd~~d~~~~~~~~~~~y~~l~~DV 205 (520)
++|+|++|+||+++||++||.++||+++++.. .+++|.++||+|||||||||||+||+|++++.. +...+|.+||+||
T Consensus 81 ~~g~I~~~~hG~~~l~~~e~~~~Y~~~~~~~~-~~~~~~~l~tlF~lpe~~L~a~lvd~~~~~~~~-~~~~~~~~~~~dv 158 (343)
T TIGR02244 81 RFGNILRGYHGLRPLSDKEVQEIYGNKYISRS-NGDRYYLLDTLFSLPEACLIAQLVDYFDDHPKG-PLAFDYRQIYQDV 158 (343)
T ss_pred CCCcEEEEecCCccCCHHHHHHHcCccccCCC-CCccEEEecccccchHHHHHHHHHHHHhccccC-CCCCCHHHHHHHH
Confidence 99999999999999999999999999998632 334999999999999999999999999987531 1124899999999
Q ss_pred HHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCc
Q 010014 206 RAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWL 285 (520)
Q Consensus 206 ~~Avd~~H~~G~lk~~v~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr 285 (520)
++||++||.+|.||++|++||++||+++|.++.+|++||++|+|+||+|||+++||+.+|+|++|+++ .+++|+
T Consensus 159 ~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~------~~~~w~ 232 (343)
T TIGR02244 159 RDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFL------GEHDWR 232 (343)
T ss_pred HHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcc------cccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999988553 568999
Q ss_pred cCccEEEECCCCCCCccCCCCccceeeccCCC--ccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccc
Q 010014 286 LYFDVVITGSAKPGFFHEDNRANLFQVGDISP--GLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDIL 363 (520)
Q Consensus 286 ~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~~~--~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil 363 (520)
+|||+||++|+||+||+++ .||++|++.+. +++.+..+++|+||+||||.+|++++++ +|++||||||||++||+
T Consensus 233 ~yFD~IIt~a~KP~FF~~~--~pf~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~-~~~~vlYvGD~i~~Di~ 309 (343)
T TIGR02244 233 DYFDVVIVDARKPGFFTEG--RPFRQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKW-RGKEVLYFGDHIYGDLL 309 (343)
T ss_pred hhCcEEEeCCCCCcccCCC--CceEEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHHCC-CCCcEEEECCcchHHHH
Confidence 9999999999999999974 37899987543 4555555999999999999999999998 79999999999999999
Q ss_pred ccccccCceEEEeehhcHHHHHHHHHhHHHHHH
Q 010014 364 RSKKVLGWRTMLVVPELEREVELLWELRDLRKK 396 (520)
Q Consensus 364 ~skk~~gWrT~~IVpELe~Ei~i~~~~~~~~~~ 396 (520)
.+||.+||||++|+||||+|+++|.+..+++++
T Consensus 310 ~~kk~~Gw~TvlI~pEL~~E~~~~~~~~~~~~~ 342 (343)
T TIGR02244 310 RSKKKRGWRTAAIIPELEQEVGILTNSKSLREE 342 (343)
T ss_pred hhHHhcCcEEEEEchhHHHHHHHHhhchhhhhc
Confidence 999999999999999999999999887766554
No 4
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.8e-105 Score=823.79 Aligned_cols=413 Identities=48% Similarity=0.728 Sum_probs=372.4
Q ss_pred CCCCCCceEEeCcccCCCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccceeeecCC
Q 010014 39 KIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGLVLDKKR 118 (520)
Q Consensus 39 ~~~~~~~VF~Nr~L~L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGLv~D~~~ 118 (520)
.++++++|||||+|+|++|.+|||||||||++|+.+++|+|||+ ++.++++..|||.+++.+.|||+|++|||++|.++
T Consensus 9 ~r~~~~~if~~rsl~l~~i~~~GfdmDyTL~~Y~~~~~esLay~-~~~~~l~~~Gyp~~ll~~~~d~~f~~rGL~ld~~~ 87 (424)
T KOG2469|consen 9 GRDVPHRIFCNRSLNLENIGIVGFDMDYTLARYNLPEMESLAYD-LAQFLLKDKGYPNELLSTSFDWNFPCRGLVLDKER 87 (424)
T ss_pred ccccchheehhhhhhhhcCcEEeeccccchhhhcccchHHHHHH-HHHHHHHhcCChhhhhccccCccceeeeeEEeccC
Confidence 57788999999999999999999999999999999999999999 56666668999999999999999999999999999
Q ss_pred CcEEeecCCCcEEEEeccCccCCHHHHHHHhcCccccccCCCCceeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCh
Q 010014 119 GNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKSTDY 198 (520)
Q Consensus 119 GnlLKlD~~g~I~~a~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~~ldtlFslpe~~L~a~lVd~~d~~~~~~~~~~~y 198 (520)
||+||+|++|+|++|+||+++++.+|+.++||++.++... +++.+++|+|++||++++||+||++|+++...+.-++|
T Consensus 88 GN~lKld~~~~vl~a~hg~rfls~~~~~eiyg~~~~~~~~--~~~~~l~t~F~~~ea~~~aq~vd~~d~~~~~~~~~~dy 165 (424)
T KOG2469|consen 88 GNLLKLDRFGYVLRAAHGTRFLSNEEISEIYGRKLVRLSD--SRYYLLNTLFSMPEADLFAQAVDFLDNGPEYGPVDMDY 165 (424)
T ss_pred CceeeeeccCceeeeccccccccccchhhhcccccccccC--chhhhhhhhhhchhHHHHHhhcchhhcCCccCccchhh
Confidence 9999999999999999999999999999999999987643 89999999999999999999999999999876666789
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCC
Q 010014 199 VRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGI 278 (520)
Q Consensus 199 ~~l~~DV~~Avd~~H~~G~lk~~v~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~ 278 (520)
+.+|+||++|++++|.+|.+|+++.++|||||.+++.++.||.++|++|||+||+|||+|+|||.+|++++|
T Consensus 166 k~~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~-------- 237 (424)
T KOG2469|consen 166 KPGWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYG-------- 237 (424)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhhccceEEeeccccchhhHHHHHHhC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCccEEEECCCCCCCccCCCCccceeeccCCCc---cccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEc
Q 010014 279 TCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISPG---LLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVG 355 (520)
Q Consensus 279 ~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~~~~---~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~G 355 (520)
.||+.|||+|||.|+||+||+++ .++++|.+.++. .+.++++++|.+|+||+++.++++++. +|++|||+|
T Consensus 238 ---~dW~~yfd~v~~~a~Kp~ff~e~--~vlreV~t~~g~l~~g~~~~p~e~~~~ySggs~~~~~~~l~~-~g~diLy~g 311 (424)
T KOG2469|consen 238 ---FDWETYFDLVETRAAKPGFFHEG--TVLREVEPQEGLLKNGDNTGPLEQGGVYSGGSLKTVETSMKV-KGKDILYGG 311 (424)
T ss_pred ---CCcceeEEEEEEeccCCcccccc--ceeeeeccccccccccccCCcchhcccCCcchHHHHHHHhcc-cccceeecc
Confidence 89999999999999999999997 478999876553 456899999999999999999999998 899999999
Q ss_pred ccccccccccccccCceEEEeehhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCChHHHHHhhhHH
Q 010014 356 DHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRM 435 (520)
Q Consensus 356 DHI~~Dil~skk~~gWrT~~IVpELe~Ei~i~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~l 435 (520)
||||+||++|||++||||++|||||+.|..+|..+++...++.++. ..++|.+++++.+..+....
T Consensus 312 dHi~~dvl~skk~~~wrt~lv~peL~~e~~v~~~~ke~~~el~~~~---~~laDiy~~l~~s~~s~~~~----------- 377 (424)
T KOG2469|consen 312 DHIWGDVLVSKKRRGWRTVLVAPELEREDLVLLDSKEEFIELLNWS---SKLADIYPNLDLSLLSAPKD----------- 377 (424)
T ss_pred cceeeeEEecceecceEEEEEehhhhhhhhhhccchHHHHHHhccc---hhhHhhccCCchhhhhcccc-----------
Confidence 9999999999999999999999999999999999886666666555 45888898888764311111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhccccccccc
Q 010014 436 DDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTS 490 (520)
Q Consensus 436 ~~l~~~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S~Fa~qv~RyAdlYtS 490 (520)
...+ +.+++.+.+ .+++|..|||+||||++.|+||.|++||||+|||
T Consensus 378 ~~~~---r~~~~~~~~-----~dk~~~~~~sl~~s~~~~t~~a~q~~r~A~~y~s 424 (424)
T KOG2469|consen 378 LSIK---RDIQKLTEC-----MDKFYGVWGSLFRTGYQRTRFALQVERYADLYTS 424 (424)
T ss_pred cchh---HHHHHHHHh-----HHHHhcchHHhhccccccchHHHHHHHHHHHhcC
Confidence 1111 112222222 2567899999999999999999999999999997
No 5
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.69 E-value=2.4e-07 Score=91.91 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=73.5
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCc-cEEEECCCCCCCccCCCCcc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYF-DVVITGSAKPGFFHEDNRAN 308 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~F-DvVIv~A~KP~FF~~~~~~~ 308 (520)
+..-|.+..+|+.|+++|.++.++||+.-..++.+++.+ .+.++| |.||+...-+. ..|
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~--------------gl~~~f~d~ii~~~~~~~-----~KP- 157 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA--------------ALQGYRPDYNVTTDDVPA-----GRP- 157 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH--------------HhcCCCCceEEccccCCC-----CCC-
Confidence 455689999999999999999999999999999988875 245665 88876432110 000
Q ss_pred ceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
.| .+| ....+.++.....+++||||+. .||..++ ..|++|++|..
T Consensus 158 -------~p-----------~~~-----~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~-~aGi~~i~v~~ 202 (253)
T TIGR01422 158 -------AP-----------WMA-----LKNAIELGVYDVAACVKVGDTV-PDIEEGR-NAGMWTVGLIL 202 (253)
T ss_pred -------CH-----------HHH-----HHHHHHcCCCCchheEEECCcH-HHHHHHH-HCCCeEEEEec
Confidence 00 111 2234455652257899999998 9987776 56999999963
No 6
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.67 E-value=8.2e-07 Score=85.74 Aligned_cols=103 Identities=28% Similarity=0.307 Sum_probs=75.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
+..-|.+..+|+.|+++|.++.++||+.-.++..++..+ .|.+|||.|++...-+ .
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~--------------gl~~~f~~i~~~~~~~----~------ 136 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT--------------GLDEFFDVVITLDDVE----H------ 136 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CChhceeEEEecCcCC----C------
Confidence 345688999999999999999999999988888888764 5789999998632110 0
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
. .| +... ...+.+.++. ...+++||||+. .||..++ ..|+++++|-.
T Consensus 137 ---~--Kp---------~p~~-----~~~~~~~~~~-~~~~~~~iGDs~-~Di~aa~-~aG~~~i~v~~ 183 (214)
T PRK13288 137 ---A--KP---------DPEP-----VLKALELLGA-KPEEALMVGDNH-HDILAGK-NAGTKTAGVAW 183 (214)
T ss_pred ---C--CC---------CcHH-----HHHHHHHcCC-CHHHEEEECCCH-HHHHHHH-HCCCeEEEEcC
Confidence 0 00 0111 2245566676 578999999997 8987776 55999999854
No 7
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.52 E-value=1.9e-06 Score=83.35 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=75.2
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccce
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 310 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~ 310 (520)
..-|.+..+|..|+++|.++.++||+.-.++..++..+ | -.+.++||.|++...-.. . .|
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~-~-----------l~~~~~f~~i~~~~~~~~---~--KP--- 146 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL-G-----------WTVGDDVDAVVCPSDVAA---G--RP--- 146 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh-h-----------hhhhccCCEEEcCCcCCC---C--CC---
Confidence 45688999999999999999999999999999999864 3 122399999998743110 0 00
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceE-EEeehhc
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT-MLVVPEL 380 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT-~~IVpEL 380 (520)
+|. + .....+.++.....+++||||.. .||..++ ..||+| ++|...-
T Consensus 147 -----~p~-----------~-----~~~a~~~~~~~~~~~~~~igD~~-~Di~aa~-~aG~~~~i~~~~g~ 194 (220)
T TIGR03351 147 -----APD-----------L-----ILRAMELTGVQDVQSVAVAGDTP-NDLEAGI-NAGAGAVVGVLTGA 194 (220)
T ss_pred -----CHH-----------H-----HHHHHHHcCCCChhHeEEeCCCH-HHHHHHH-HCCCCeEEEEecCC
Confidence 010 1 12234455652147999999997 7977666 679999 7886543
No 8
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.50 E-value=2.2e-06 Score=86.07 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=71.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccC-ccEEEECCCCCCCccCCCCcc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLY-FDVVITGSAKPGFFHEDNRAN 308 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~-FDvVIv~A~KP~FF~~~~~~~ 308 (520)
+..-|.+..+|+.|+++|.++.++||+.-..++.++.-+ .+.++ ||.|++...-+ . .
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~--------------~l~~~~~d~i~~~~~~~----~--~-- 157 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA--------------AAQGYRPDHVVTTDDVP----A--G-- 157 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH--------------hhcCCCceEEEcCCcCC----C--C--
Confidence 455689999999999999999999999999998888764 12344 47776553200 0 0
Q ss_pred ceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
.|. ..+| ....+-++.....+++||||.. .||..++ ..|++|++|..
T Consensus 158 -------KP~---------p~~~-----~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~-~aG~~~i~v~~ 204 (267)
T PRK13478 158 -------RPY---------PWMA-----LKNAIELGVYDVAACVKVDDTV-PGIEEGL-NAGMWTVGVIL 204 (267)
T ss_pred -------CCC---------hHHH-----HHHHHHcCCCCCcceEEEcCcH-HHHHHHH-HCCCEEEEEcc
Confidence 000 0111 2344555652246899999998 8977776 56999999975
No 9
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.49 E-value=5.5e-06 Score=80.57 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=77.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
...-|.+..+|+.|++.|.++.++||+.-..+..+++.+ .+..+||.|++... ...+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~----~~~~----- 147 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF--------------DLRDYFDALASAEK----LPYS----- 147 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC--------------cchhcccEEEEccc----CCCC-----
Confidence 344589999999999999999999999999999888874 47889999887632 1000
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
.|. ..+ ...+++.+|. ...+++||||+. .||-.++ ..|++|++|-..
T Consensus 148 ------Kp~---------~~~-----~~~~~~~~~~-~~~~~~~igDs~-~Di~aA~-~aG~~~i~v~~~ 194 (222)
T PRK10826 148 ------KPH---------PEV-----YLNCAAKLGV-DPLTCVALEDSF-NGMIAAK-AARMRSIVVPAP 194 (222)
T ss_pred ------CCC---------HHH-----HHHHHHHcCC-CHHHeEEEcCCh-hhHHHHH-HcCCEEEEecCC
Confidence 000 011 2446677787 578999999998 7976666 669999998654
No 10
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.48 E-value=6.9e-06 Score=79.22 Aligned_cols=103 Identities=22% Similarity=0.281 Sum_probs=74.0
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
...-|.+..+|+.|+++|.++.++||+.-.+...++..+ .|.++||.|++...-
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~~------------ 145 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL--------------GIADYFSVVIGGDSL------------ 145 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CCccCccEEEcCCCC------------
Confidence 445689999999999999999999999999888887764 467789987653210
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
....|. + .....+.+.++. ...+++||||.. .|+-.++. .||.|++|..
T Consensus 146 ---~~~kp~---------~-----~~~~~~~~~~~~-~~~~~i~igD~~-~Di~~a~~-~g~~~i~v~~ 194 (226)
T PRK13222 146 ---PNKKPD---------P-----APLLLACEKLGL-DPEEMLFVGDSR-NDIQAARA-AGCPSVGVTY 194 (226)
T ss_pred ---CCCCcC---------h-----HHHHHHHHHcCC-ChhheEEECCCH-HHHHHHHH-CCCcEEEECc
Confidence 000000 0 113345555666 578999999995 89877765 6999999863
No 11
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.47 E-value=3.2e-07 Score=88.46 Aligned_cols=107 Identities=26% Similarity=0.290 Sum_probs=79.8
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCc
Q 010014 228 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRA 307 (520)
Q Consensus 228 kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~ 307 (520)
.++...|.+..+|+.|+++|.++.++||++-.++...+..+ .|.+|||.|++..... ..
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~------~~- 149 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL--------------GVRDFFDAVITSEEEG------VE- 149 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC--------------ChHHhccEEEEeccCC------CC-
Confidence 35667899999999999999999999999988888777653 5789999988753211 00
Q ss_pred cceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 308 NLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 308 ~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
.|. ..+ .....+.+|. ...+++||||+...||..+++ .||+|++|-.-
T Consensus 150 --------KP~---------~~~-----~~~~~~~~~~-~~~~~~~igDs~~~di~~A~~-aG~~~i~~~~~ 197 (221)
T TIGR02253 150 --------KPH---------PKI-----FYAALKRLGV-KPEEAVMVGDRLDKDIKGAKN-LGMKTVWINQG 197 (221)
T ss_pred --------CCC---------HHH-----HHHHHHHcCC-ChhhEEEECCChHHHHHHHHH-CCCEEEEECCC
Confidence 000 001 2345566776 578999999999999887775 59999998643
No 12
>PLN02940 riboflavin kinase
Probab=98.43 E-value=4.1e-06 Score=89.18 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=74.3
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCC----CCCCccCCCC
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFFHEDNR 306 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~----KP~FF~~~~~ 306 (520)
..-|.+..+|+.|+++|.++.++||+.-.++...+.-. ..|.++||.|++... ||
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~-------------~gl~~~Fd~ii~~d~v~~~KP-------- 151 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCH-------------QGWKESFSVIVGGDEVEKGKP-------- 151 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhc-------------cChHhhCCEEEehhhcCCCCC--------
Confidence 34589999999999999999999999998888776532 358999999998642 22
Q ss_pred ccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 307 ANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 307 ~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
.| .+ ....++.++. ...++++|||.. .||..++ ..|+++++|-
T Consensus 152 ---------~p-----------~~-----~~~a~~~lgv-~p~~~l~VGDs~-~Di~aA~-~aGi~~I~v~ 194 (382)
T PLN02940 152 ---------SP-----------DI-----FLEAAKRLNV-EPSNCLVIEDSL-PGVMAGK-AAGMEVIAVP 194 (382)
T ss_pred ---------CH-----------HH-----HHHHHHHcCC-ChhHEEEEeCCH-HHHHHHH-HcCCEEEEEC
Confidence 00 11 2234555676 678999999998 5976666 5699999985
No 13
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.31 E-value=1.8e-06 Score=81.13 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=66.2
Q ss_pred hHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeeccC
Q 010014 236 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDI 315 (520)
Q Consensus 236 l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~ 315 (520)
....|..|++. .++.++||+.-.++...++.+ .|.+|||.|++...-. ... |
T Consensus 92 ~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~--------------~l~~~fd~i~~~~~~~--~~K---P-------- 143 (188)
T PRK10725 92 LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHL--------------GLRRYFDAVVAADDVQ--HHK---P-------- 143 (188)
T ss_pred HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC--------------CcHhHceEEEehhhcc--CCC---C--------
Confidence 35788888875 799999999999999888874 5789999988853210 000 0
Q ss_pred CCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 316 SPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 316 ~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
.|. + .....+.++. ...+++||||. ..||..++ ..||+|++|-
T Consensus 144 ~p~-----------~-----~~~~~~~~~~-~~~~~l~igDs-~~di~aA~-~aG~~~i~~~ 186 (188)
T PRK10725 144 APD-----------T-----FLRCAQLMGV-QPTQCVVFEDA-DFGIQAAR-AAGMDAVDVR 186 (188)
T ss_pred ChH-----------H-----HHHHHHHcCC-CHHHeEEEecc-HhhHHHHH-HCCCEEEeec
Confidence 010 1 1123444565 46899999998 78876665 6699999873
No 14
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.22 E-value=2.6e-06 Score=77.28 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=80.3
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCC
Q 010014 227 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNR 306 (520)
Q Consensus 227 ~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~ 306 (520)
...+...|.+..+|++|+++|.++.++||++-..+...++.+ .|.++||-|++....+. .
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~--------------~~~~~f~~i~~~~~~~~--~---- 132 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL--------------GLDDYFDEIISSDDVGS--R---- 132 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT--------------THGGGCSEEEEGGGSSS--S----
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc--------------ccccccccccccchhhh--h----
Confidence 367788999999999999999999999999998888888875 45699999987753221 0
Q ss_pred ccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEe
Q 010014 307 ANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 376 (520)
Q Consensus 307 ~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~I 376 (520)
.|. ......+.+-+++ ...++++|||+. .||..++ ..||+|+.|
T Consensus 133 ---------Kp~--------------~~~~~~~~~~~~~-~p~~~~~vgD~~-~d~~~A~-~~G~~~i~v 176 (176)
T PF13419_consen 133 ---------KPD--------------PDAYRRALEKLGI-PPEEILFVGDSP-SDVEAAK-EAGIKTIWV 176 (176)
T ss_dssp ---------TTS--------------HHHHHHHHHHHTS-SGGGEEEEESSH-HHHHHHH-HTTSEEEEE
T ss_pred ---------hhH--------------HHHHHHHHHHcCC-CcceEEEEeCCH-HHHHHHH-HcCCeEEeC
Confidence 000 1113445666687 689999999999 9977776 679999986
No 15
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.17 E-value=1.1e-05 Score=74.93 Aligned_cols=96 Identities=30% Similarity=0.374 Sum_probs=70.4
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC----CCCCCccCCC
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDN 305 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A----~KP~FF~~~~ 305 (520)
+...|.+..+|+.|++.|.++.++||+.... ...... + .+.++||.||+.. .||
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~-------------~l~~~f~~i~~~~~~~~~KP------- 141 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE-L-------------GLRDLFDVVIFSGDVGRGKP------- 141 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh-c-------------CCHHHCCEEEEcCCCCCCCC-------
Confidence 5667999999999999999999999999988 444332 2 3467899998742 222
Q ss_pred CccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEe
Q 010014 306 RANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 376 (520)
Q Consensus 306 ~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~I 376 (520)
. ..+ ...+.+.++. ...+++||||+. .||..++ ..||+|++|
T Consensus 142 ------------~---------~~~-----~~~~~~~~~~-~~~~~~~vgD~~-~di~aA~-~~G~~~i~v 183 (183)
T TIGR01509 142 ------------D---------PDI-----YLLALKKLGL-KPEECLFVDDSP-AGIEAAK-AAGMHTVLV 183 (183)
T ss_pred ------------C---------HHH-----HHHHHHHcCC-CcceEEEEcCCH-HHHHHHH-HcCCEEEeC
Confidence 0 011 2345566676 579999999998 4866664 679999976
No 16
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.16 E-value=4.4e-06 Score=79.57 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=76.3
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC----CCCCCccCCCCc
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDNRA 307 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A----~KP~FF~~~~~~ 307 (520)
.-|.+..+|++||++|.++.++||++..+....++.+ .+.++||.|++.. .||.
T Consensus 93 ~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~--------------gl~~~fd~i~~s~~~~~~KP~-------- 150 (198)
T TIGR01428 93 PHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA--------------GLDDPFDAVLSADAVRAYKPA-------- 150 (198)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC--------------CChhhhheeEehhhcCCCCCC--------
Confidence 4689999999999999999999999999988888753 3688999988742 2320
Q ss_pred cceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 308 NLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 308 ~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
..+ ...+.+.+|. ...++++|||+. .||..++ ..||+|+.|-+.
T Consensus 151 --------------------~~~-----~~~~~~~~~~-~p~~~~~vgD~~-~Di~~A~-~~G~~~i~v~r~ 194 (198)
T TIGR01428 151 --------------------PQV-----YQLALEALGV-PPDEVLFVASNP-WDLGGAK-KFGFKTAWVNRP 194 (198)
T ss_pred --------------------HHH-----HHHHHHHhCC-ChhhEEEEeCCH-HHHHHHH-HCCCcEEEecCC
Confidence 011 2335566776 578999999999 8987775 679999998764
No 17
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.14 E-value=2.9e-05 Score=75.27 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=68.2
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCcc-EEEECC----CCCCCccC
Q 010014 229 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFD-VVITGS----AKPGFFHE 303 (520)
Q Consensus 229 Yi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FD-vVIv~A----~KP~FF~~ 303 (520)
.+...|.+..+|+.| +.++.++||+.-.++...+..+ +..++|| +|++.. .||
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~--------------~l~~~F~~~v~~~~~~~~~KP----- 143 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT--------------GMLHYFPDKLFSGYDIQRWKP----- 143 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc--------------ChHHhCcceEeeHHhcCCCCC-----
Confidence 455678999999999 3799999999998888877653 4678895 555432 233
Q ss_pred CCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 304 DNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 304 ~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
.+ .+| ....+-++. ...+++||||+. .||..++ ..|++|+++.
T Consensus 144 --~p---------------------~~~-----~~a~~~~~~-~p~~~l~igDs~-~di~aA~-~aG~~~i~~~ 186 (221)
T PRK10563 144 --DP---------------------ALM-----FHAAEAMNV-NVENCILVDDSS-AGAQSGI-AAGMEVFYFC 186 (221)
T ss_pred --Ch---------------------HHH-----HHHHHHcCC-CHHHeEEEeCcH-hhHHHHH-HCCCEEEEEC
Confidence 00 011 223455666 578999999998 6877666 6799999885
No 18
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.08 E-value=1.8e-05 Score=79.12 Aligned_cols=101 Identities=28% Similarity=0.456 Sum_probs=68.0
Q ss_pred cccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC----CCCCCc
Q 010014 226 PKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFF 301 (520)
Q Consensus 226 p~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A----~KP~FF 301 (520)
|+-|..-++.. .+|++||+.| +.|.|||.||.--....=.+| =..|||.||+++ .||
T Consensus 109 ~~~~~~~~~~~-~~lq~lR~~g--~~l~iisN~d~r~~~~l~~~~-------------l~~~fD~vv~S~e~g~~KP--- 169 (237)
T KOG3085|consen 109 PSAWKYLDGMQ-ELLQKLRKKG--TILGIISNFDDRLRLLLLPLG-------------LSAYFDFVVESCEVGLEKP--- 169 (237)
T ss_pred ccCceeccHHH-HHHHHHHhCC--eEEEEecCCcHHHHHHhhccC-------------HHHhhhhhhhhhhhccCCC---
Confidence 44444445544 9999999999 555566666554443332233 248999999765 455
Q ss_pred cCCCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 302 HEDNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 302 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
+ +.+|+ ..++.++. ...+|+++||..--|+..++ ..||+|.+|.
T Consensus 170 -D---p~If~--------------------------~al~~l~v-~Pee~vhIgD~l~nD~~gA~-~~G~~ailv~ 213 (237)
T KOG3085|consen 170 -D---PRIFQ--------------------------LALERLGV-KPEECVHIGDLLENDYEGAR-NLGWHAILVD 213 (237)
T ss_pred -C---hHHHH--------------------------HHHHHhCC-ChHHeEEecCccccccHhHH-HcCCEEEEEc
Confidence 1 12332 24566676 57899999999999966555 6799999998
No 19
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.06 E-value=1.5e-05 Score=78.43 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=75.8
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcc
Q 010014 229 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 308 (520)
Q Consensus 229 Yi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~ 308 (520)
++..-|.+..+|+.||++|.++.++||+.-.++..++..+ .|.++||+|++.-..+. ..|
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~~-----~KP- 152 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL--------------GWEQRCAVLIGGDTLAE-----RKP- 152 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc--------------CchhcccEEEecCcCCC-----CCC-
Confidence 4556789999999999999999999999988887777653 57889999887532110 000
Q ss_pred ceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
+| .+ ...+.+.+|. ...+++||||+. .||..++ ..||+|++|.
T Consensus 153 -------~p-----------~~-----~~~~~~~l~~-~p~~~l~IGDs~-~Di~aA~-~aG~~~i~v~ 195 (229)
T PRK13226 153 -------HP-----------LP-----LLVAAERIGV-APTDCVYVGDDE-RDILAAR-AAGMPSVAAL 195 (229)
T ss_pred -------CH-----------HH-----HHHHHHHhCC-ChhhEEEeCCCH-HHHHHHH-HCCCcEEEEe
Confidence 01 01 2245667787 679999999995 8977665 6699999984
No 20
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.00 E-value=1.3e-05 Score=79.96 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=77.8
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
+..-|.+..+|+.|++.|.++.++||+.-.++...+..+ .|.+|||.||+...-+.. . |
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~--------------gl~~~Fd~iv~~~~~~~~--K---P-- 165 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL--------------GLSDFFQAVIIGSECEHA--K---P-- 165 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc--------------CChhhCcEEEecCcCCCC--C---C--
Confidence 445688999999999999999999999999999999874 578999999887642110 0 0
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
.|. . .....+.++. ...+++||||.. .||..++ ..|++|++|-
T Consensus 166 ------~p~-----------~-----~~~a~~~~~~-~~~~~l~vgDs~-~Di~aA~-~aGi~~i~v~ 208 (248)
T PLN02770 166 ------HPD-----------P-----YLKALEVLKV-SKDHTFVFEDSV-SGIKAGV-AAGMPVVGLT 208 (248)
T ss_pred ------ChH-----------H-----HHHHHHHhCC-ChhHEEEEcCCH-HHHHHHH-HCCCEEEEEe
Confidence 010 1 1233455676 578999999999 8988887 5699999985
No 21
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.99 E-value=1.1e-05 Score=77.38 Aligned_cols=103 Identities=22% Similarity=0.302 Sum_probs=75.6
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcc
Q 010014 229 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 308 (520)
Q Consensus 229 Yi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~ 308 (520)
.+..-|....+|++|+++|.++.++||+.-.++...+..+ +|.++||.|++...-. .
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~----~----- 129 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL--------------GLLPLFDHVIGSDEVP----R----- 129 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc--------------CChhheeeEEecCcCC----C-----
Confidence 3566789999999999999999999999999998888763 5788999887632100 0
Q ss_pred ceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
. .|. . .-.....+.++. ...+++||||+. .||..++ ..|+++++|.
T Consensus 130 ----~--KP~---------~-----~~~~~~~~~~~~-~~~~~l~igD~~-~Di~aA~-~~Gi~~i~~~ 175 (205)
T TIGR01454 130 ----P--KPA---------P-----DIVREALRLLDV-PPEDAVMVGDAV-TDLASAR-AAGTATVAAL 175 (205)
T ss_pred ----C--CCC---------h-----HHHHHHHHHcCC-ChhheEEEcCCH-HHHHHHH-HcCCeEEEEE
Confidence 0 000 0 112234556676 678999999997 7977666 5699999885
No 22
>PRK09449 dUMP phosphatase; Provisional
Probab=97.96 E-value=1.6e-05 Score=77.09 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=73.8
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCC----CCCCccCCC
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFFHEDN 305 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~----KP~FF~~~~ 305 (520)
+..-|.+..+|+.|+ +|.++.++||+..+.+...+..+ .+.++||.|++... ||.
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~v~~~~~~~~~KP~------ 152 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT--------------GLRDYFDLLVISEQVGVAKPD------ 152 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC--------------ChHHHcCEEEEECccCCCCCC------
Confidence 345689999999999 57999999999999998888763 46789999987642 330
Q ss_pred CccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 306 RANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 306 ~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
+ .+ ...+.+.+|.....+++||||+...||..++ ..||+|+.|.+
T Consensus 153 -p---------------------~~-----~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~-~aG~~~i~~~~ 197 (224)
T PRK09449 153 -V---------------------AI-----FDYALEQMGNPDRSRVLMVGDNLHSDILGGI-NAGIDTCWLNA 197 (224)
T ss_pred -H---------------------HH-----HHHHHHHcCCCCcccEEEEcCCcHHHHHHHH-HCCCcEEEECC
Confidence 0 01 1223445554223589999999999987665 66999999864
No 23
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.93 E-value=2.4e-05 Score=74.91 Aligned_cols=105 Identities=24% Similarity=0.295 Sum_probs=77.2
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCC
Q 010014 227 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNR 306 (520)
Q Consensus 227 ~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~ 306 (520)
.+.+...|.+..+|+.|+++|.++.++||+.-.++..+++.+ +|.++||.|++...-+ .
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~~~----~--- 139 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL--------------GLAKYFSVLIGGDSLA----Q--- 139 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CcHhhCcEEEecCCCC----C---
Confidence 344566789999999999999999999999999999998874 5789999887542100 0
Q ss_pred ccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 307 ANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 307 ~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
. .|. ... ...+++.++. ...+++||||+ ..|+..+++ .|+.|+.|.
T Consensus 140 ------~--Kp~---------p~~-----~~~~~~~~~~-~~~~~~~igDs-~~d~~aa~~-aG~~~i~v~ 185 (213)
T TIGR01449 140 ------R--KPH---------PDP-----LLLAAERLGV-APQQMVYVGDS-RVDIQAARA-AGCPSVLLT 185 (213)
T ss_pred ------C--CCC---------hHH-----HHHHHHHcCC-ChhHeEEeCCC-HHHHHHHHH-CCCeEEEEc
Confidence 0 000 001 2345566676 57889999999 589877764 699999884
No 24
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.93 E-value=8e-06 Score=78.31 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=71.4
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCC----CCCCccCCCCc
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFFHEDNRA 307 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~----KP~FF~~~~~~ 307 (520)
..|.+..+|+.||++|.++.++||++-..+....... ..|.++||.|++... ||
T Consensus 85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~-------------~~l~~~fd~v~~s~~~~~~KP--------- 142 (199)
T PRK09456 85 LRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEY-------------PEVRAAADHIYLSQDLGMRKP--------- 142 (199)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhc-------------hhHHHhcCEEEEecccCCCCC---------
Confidence 4678999999999999999999999876554433321 357889999987642 22
Q ss_pred cceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 308 NLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 308 ~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
...+| ....+.+|. ...+++||||+.. ||..++ ..||+|+.|-..
T Consensus 143 -------------------~p~~~-----~~~~~~~~~-~p~~~l~vgD~~~-di~aA~-~aG~~~i~~~~~ 187 (199)
T PRK09456 143 -------------------EARIY-----QHVLQAEGF-SAADAVFFDDNAD-NIEAAN-ALGITSILVTDK 187 (199)
T ss_pred -------------------CHHHH-----HHHHHHcCC-ChhHeEEeCCCHH-HHHHHH-HcCCEEEEecCC
Confidence 01122 335566676 6799999999975 655555 689999988553
No 25
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.91 E-value=1.5e-05 Score=78.45 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=74.0
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC----CCCCCccCCC
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDN 305 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A----~KP~FF~~~~ 305 (520)
+..-|.+..+|+.||++|.++.++||+...++...+..+ .|.++||.||+.. .||
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~iv~s~~~~~~KP------- 150 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT--------------GLDAHLDLLLSTHTFGYPKE------- 150 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC--------------CcHHHCCEEEEeeeCCCCCC-------
Confidence 344688999999999999999999999999988887763 5889999988654 222
Q ss_pred CccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 306 RANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 306 ~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
+| .+ ....++.+|. ...+++||||... ||. +-+..||+|+..|+-
T Consensus 151 ----------~p-----------~~-----~~~~~~~~~~-~p~~~l~igDs~~-di~-aA~~aG~~~~~~v~~ 195 (224)
T PRK14988 151 ----------DQ-----------RL-----WQAVAEHTGL-KAERTLFIDDSEP-ILD-AAAQFGIRYCLGVTN 195 (224)
T ss_pred ----------CH-----------HH-----HHHHHHHcCC-ChHHEEEEcCCHH-HHH-HHHHcCCeEEEEEeC
Confidence 00 01 1234566676 6789999999985 755 445779998665554
No 26
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.91 E-value=4.5e-05 Score=68.19 Aligned_cols=101 Identities=26% Similarity=0.296 Sum_probs=70.0
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEecCCC--------hhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC--C
Q 010014 227 KTYINEDRSIVPMLKMLRESGRSTFLVTNSL--------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS--A 296 (520)
Q Consensus 227 ~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~--------~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A--~ 296 (520)
......-|.+..+|+.|+++|.+++++||+. .+++...+..+ | - . |+.+++.. .
T Consensus 21 ~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~-----------l--~--~~~~~~~~~~~ 84 (132)
T TIGR01662 21 EDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-G-----------V--P--IDVLYACPHCR 84 (132)
T ss_pred HHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-C-----------C--C--EEEEEECCCCC
Confidence 3334556899999999999999999999999 66677666664 2 1 1 34443332 2
Q ss_pred CCCCccCCCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHh-cCcCCCcEEEEcccccccccccccccCceEEE
Q 010014 297 KPGFFHEDNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL-SIESSSQVLYVGDHIYGDILRSKKVLGWRTML 375 (520)
Q Consensus 297 KP~FF~~~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll-~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~ 375 (520)
|| . .+....+++.+ +. ...+++||||+...||..++ ..||+|++
T Consensus 85 KP-------~--------------------------~~~~~~~~~~~~~~-~~~~~v~IGD~~~~Di~~A~-~~Gi~~i~ 129 (132)
T TIGR01662 85 KP-------K--------------------------PGMFLEALKRFNEI-DPEESVYVGDQDLTDLQAAK-RAGLAFIL 129 (132)
T ss_pred CC-------C--------------------------hHHHHHHHHHcCCC-ChhheEEEcCCCcccHHHHH-HCCCeEEE
Confidence 22 0 11123455666 46 67899999998889987775 66999999
Q ss_pred eeh
Q 010014 376 VVP 378 (520)
Q Consensus 376 IVp 378 (520)
|-|
T Consensus 130 ~~~ 132 (132)
T TIGR01662 130 VAP 132 (132)
T ss_pred eeC
Confidence 865
No 27
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.90 E-value=2e-05 Score=79.66 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=76.0
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCC----CCCCccCCCC
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFFHEDNR 306 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~----KP~FF~~~~~ 306 (520)
..-|.+..+|+.|+++|.++.++||+...++..++..+ .|.+|||.||+... ||
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~--------------gl~~~Fd~ii~~~d~~~~KP-------- 166 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV--------------GMEGFFSVVLAAEDVYRGKP-------- 166 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc--------------CCHhhCcEEEecccCCCCCC--------
Confidence 44689999999999999999999999999999999874 58999999998642 22
Q ss_pred ccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 307 ANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 307 ~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
.| .+| ....+.+|. ...+++||||.. .||..++ ..||+|++|-
T Consensus 167 ---------~P-----------e~~-----~~a~~~l~~-~p~~~l~IgDs~-~Di~aA~-~aG~~~i~v~ 209 (260)
T PLN03243 167 ---------DP-----------EMF-----MYAAERLGF-IPERCIVFGNSN-SSVEAAH-DGCMKCVAVA 209 (260)
T ss_pred ---------CH-----------HHH-----HHHHHHhCC-ChHHeEEEcCCH-HHHHHHH-HcCCEEEEEe
Confidence 00 122 234566777 678999999995 6876665 6699999885
No 28
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.90 E-value=1.7e-05 Score=75.73 Aligned_cols=95 Identities=27% Similarity=0.383 Sum_probs=68.6
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCC----CCCCccCCCC
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFFHEDNR 306 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~----KP~FF~~~~~ 306 (520)
...|.+..+|+.|+++|.++.++||++... ...+.. -.+.++||.|++... ||
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~--------------~~l~~~fd~i~~s~~~~~~KP-------- 161 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEA--------------LGLLEYFDFVVTSYEVGAEKP-------- 161 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHH--------------CCcHHhcceEEeecccCCCCC--------
Confidence 446889999999999999999999998643 333332 357889999987432 22
Q ss_pred ccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEE
Q 010014 307 ANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTML 375 (520)
Q Consensus 307 ~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~ 375 (520)
+ ..+ .....+.+|. ...+++||||+...||..++ ..||+|++
T Consensus 162 ---------~-----------~~~-----~~~~~~~~~~-~~~~~~~IgD~~~~Di~~A~-~aG~~~i~ 203 (203)
T TIGR02252 162 ---------D-----------PKI-----FQEALERAGI-SPEEALHIGDSLRNDYQGAR-AAGWRALL 203 (203)
T ss_pred ---------C-----------HHH-----HHHHHHHcCC-ChhHEEEECCCchHHHHHHH-HcCCeeeC
Confidence 0 001 2334556676 67899999999999987775 56999873
No 29
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.77 E-value=4.1e-05 Score=73.64 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=69.0
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC----CCCCCccCCCC
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDNR 306 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A----~KP~FF~~~~~ 306 (520)
...|.+..+|+.||++|.++.++||+........... .. ..+.++||.|++.. +||.
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~-----------~~l~~~fd~v~~s~~~~~~KP~------- 154 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LP-----------GDIMALFDAVVESCLEGLRKPD------- 154 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hh-----------hhhHhhCCEEEEeeecCCCCCC-------
Confidence 4467899999999999999999999976553322221 11 35788999998542 3431
Q ss_pred ccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 307 ANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 307 ~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
+ .+ ....++.+|. ...+++||||. ..||..++ ..||.|++|.+
T Consensus 155 p---------------------~~-----~~~~~~~~g~-~~~~~l~i~D~-~~di~aA~-~aG~~~i~v~~ 197 (211)
T TIGR02247 155 P---------------------RI-----YQLMLERLGV-APEECVFLDDL-GSNLKPAA-ALGITTIKVSD 197 (211)
T ss_pred H---------------------HH-----HHHHHHHcCC-CHHHeEEEcCC-HHHHHHHH-HcCCEEEEECC
Confidence 0 01 1234556676 67899999875 66877666 56999999864
No 30
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.75 E-value=0.00022 Score=76.06 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=76.2
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccce
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 310 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~ 310 (520)
..-|.+..+|+.|+++|.++.++||++-.++..++..+ .|.+|||.||+...... . . +
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l--------------gL~~yFd~Iv~sddv~~---~-K-P--- 273 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI--------------GIRGFFSVIVAAEDVYR---G-K-P--- 273 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CCHHHceEEEecCcCCC---C-C-C---
Confidence 34589999999999999999999999999999988874 57899999998654210 0 0 0
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
+| .+| ....+.+|. ...+++||||.. .||..++ ..||+|++|...
T Consensus 274 -----~P-----------eif-----l~A~~~lgl-~Peecl~IGDS~-~DIeAAk-~AGm~~IgV~~~ 318 (381)
T PLN02575 274 -----DP-----------EMF-----IYAAQLLNF-IPERCIVFGNSN-QTVEAAH-DARMKCVAVASK 318 (381)
T ss_pred -----CH-----------HHH-----HHHHHHcCC-CcccEEEEcCCH-HHHHHHH-HcCCEEEEECCC
Confidence 00 011 123455676 689999999987 5865555 679999999753
No 31
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.74 E-value=3.1e-05 Score=72.37 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=67.3
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccce
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 310 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~ 310 (520)
..-|.+..+|+.|+++|.++.++||+.- ...+++. ..|.++||.|+....-+. .
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~--------------~~l~~~f~~~~~~~~~~~------~---- 140 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEK--------------LGLIDYFDAIVDPAEIKK------G---- 140 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHh--------------cCcHhhCcEEEehhhcCC------C----
Confidence 3458999999999999999999999853 3444433 357899999886542110 0
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEe
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 376 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~I 376 (520)
.| ...+|. ..++.++. ...+++||||+. .||..++ ..|++|++|
T Consensus 141 -----kp---------~p~~~~-----~~~~~~~~-~~~~~v~vgD~~-~di~aA~-~aG~~~i~v 184 (185)
T TIGR01990 141 -----KP---------DPEIFL-----AAAEGLGV-SPSECIGIEDAQ-AGIEAIK-AAGMFAVGV 184 (185)
T ss_pred -----CC---------ChHHHH-----HHHHHcCC-CHHHeEEEecCH-HHHHHHH-HcCCEEEec
Confidence 00 011221 24555676 578999999996 8977666 569999986
No 32
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.74 E-value=6.3e-05 Score=76.66 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=77.3
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
+..-|.+..+|+.|+++|.++.++||+.-.+++.+++.+ .+.++||.|++....+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~--------------gl~~~F~~vi~~~~~~----------- 195 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ--------------GLRSLFSVVQAGTPIL----------- 195 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CChhheEEEEecCCCC-----------
Confidence 455689999999999999999999999999999999874 4788999887542110
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhc
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 380 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpEL 380 (520)
+ +..+ ...+++.++. ...+++||||.+ .||..++. .||+|++|.-..
T Consensus 196 -------~---------k~~~-----~~~~l~~~~~-~p~~~l~IGDs~-~Di~aA~~-AG~~~I~v~~g~ 242 (273)
T PRK13225 196 -------S---------KRRA-----LSQLVAREGW-QPAAVMYVGDET-RDVEAARQ-VGLIAVAVTWGF 242 (273)
T ss_pred -------C---------CHHH-----HHHHHHHhCc-ChhHEEEECCCH-HHHHHHHH-CCCeEEEEecCC
Confidence 0 0011 2345566676 568999999996 69887775 799999996543
No 33
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.72 E-value=0.00073 Score=80.76 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=75.1
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCC-ccCccEEEECCCCCCCccCCCCccce
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDW-LLYFDVVITGSAKPGFFHEDNRANLF 310 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dW-r~~FDvVIv~A~KP~FF~~~~~~~~~ 310 (520)
.-|.+..+|+.||++|.++.++||+.-.+++.++..+ .| ..|||.|++.-.-. .
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~--------------gl~~~~Fd~iv~~~~~~----~------- 216 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA--------------GLPLSMFDAIVSADAFE----N------- 216 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc--------------CCChhHCCEEEECcccc----c-------
Confidence 3589999999999999999999999999999988764 35 47899988653200 0
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhc
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 380 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpEL 380 (520)
. .| ...+| ....+.++. ...+++||||.. .||..++ ..||+|++|....
T Consensus 217 --~--KP---------~Pe~~-----~~a~~~lgv-~p~e~v~IgDs~-~Di~AA~-~aGm~~I~v~~~~ 265 (1057)
T PLN02919 217 --L--KP---------APDIF-----LAAAKILGV-PTSECVVIEDAL-AGVQAAR-AAGMRCIAVTTTL 265 (1057)
T ss_pred --C--CC---------CHHHH-----HHHHHHcCc-CcccEEEEcCCH-HHHHHHH-HcCCEEEEECCCC
Confidence 0 00 01122 224556676 678999999997 5866555 6799999998764
No 34
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.71 E-value=7.6e-05 Score=71.74 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=76.0
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
+...|....+|+.||+. .++.++||+.-......+..+ .|..+||.|++...-. .+
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~--------------~l~~~fd~i~~~~~~~------~~--- 151 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS--------------GLFPFFDDIFVSEDAG------IQ--- 151 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC--------------CcHhhcCEEEEcCccC------CC---
Confidence 34468899999999999 999999999999888887763 5778999998864310 00
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHh-cCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL-SIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll-~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
.|. ..+| ....+.+ +. +..+++||||+...||..++ ..||.++.+-..
T Consensus 152 ------KP~---------~~~~-----~~~~~~~~~~-~~~~~v~igD~~~~di~~A~-~~G~~~i~~~~~ 200 (224)
T TIGR02254 152 ------KPD---------KEIF-----NYALERMPKF-SKEEVLMIGDSLTADIKGGQ-NAGLDTCWMNPD 200 (224)
T ss_pred ------CCC---------HHHH-----HHHHHHhcCC-CchheEEECCCcHHHHHHHH-HCCCcEEEECCC
Confidence 000 0122 2345555 66 56899999999989988777 459999998654
No 35
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.70 E-value=9.7e-05 Score=70.39 Aligned_cols=101 Identities=10% Similarity=0.070 Sum_probs=62.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh-ccCcCCCCCCCCCCCCccCccEEEECCC-CCCCccCCCCc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL-CGSHTLDGGITCNSDWLLYFDVVITGSA-KPGFFHEDNRA 307 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl-~g~~~~~~~~~~~~dWr~~FDvVIv~A~-KP~FF~~~~~~ 307 (520)
+..-|.+..+|++|++.+ +++++||..-.........+ +. .-|-++|+.||+... ||. +
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~-----------~~f~~~f~~i~~~~~~~~k-------p 133 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLN-----------ALFPGAFSEVLMCGHDESK-------E 133 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHH-----------HhCCCcccEEEEeccCccc-------H
Confidence 445688999999999987 46788997766555444332 11 223346766665332 220 0
Q ss_pred cceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc-CceEEEeehh
Q 010014 308 NLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL-GWRTMLVVPE 379 (520)
Q Consensus 308 ~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~-gWrT~~IVpE 379 (520)
.+ .....+.+| ..+++||||...+ |..++... |+.|+.+-..
T Consensus 134 ---------------------~~-----~~~a~~~~~---~~~~v~vgDs~~d-i~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 134 ---------------------KL-----FIKAKEKYG---DRVVCFVDDLAHN-LDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred ---------------------HH-----HHHHHHHhC---CCcEEEeCCCHHH-HHHHHHHHcCCcEEEecch
Confidence 00 112233333 3568999999988 66666533 9999999555
No 36
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.67 E-value=7.9e-05 Score=76.21 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=75.5
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
+..-|.+..+|..|++.|.++.++||+.-.+.+.++..+.+ ..|.++|++| ....
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~-----------~~~~~~~~~v-~~~~------------- 197 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLG-----------PERAQGLDVF-AGDD------------- 197 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcc-----------ccccCceEEE-eccc-------------
Confidence 34568899999999999999999999999999999987755 4677778776 2210
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
+....|. -.-.....+.++. ...+++||||.+ .||..++ ..|+++++|..
T Consensus 198 --~~~~KP~--------------p~~~~~a~~~~~~-~p~~~l~IGDs~-~Di~aA~-~aG~~~i~v~~ 247 (286)
T PLN02779 198 --VPKKKPD--------------PDIYNLAAETLGV-DPSRCVVVEDSV-IGLQAAK-AAGMRCIVTKS 247 (286)
T ss_pred --cCCCCCC--------------HHHHHHHHHHhCc-ChHHEEEEeCCH-HhHHHHH-HcCCEEEEEcc
Confidence 0000000 0112234566776 678999999998 6987776 46999998854
No 37
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.62 E-value=7.7e-05 Score=70.33 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=69.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
+...|.+..+|++|+ +++.++||++-..+...+..+ .+.++||.|++...-..-. +
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~--------------gl~~~fd~i~~~~~~~~~~------~- 138 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL--------------GIEDCFDGIFCFDTANPDY------L- 138 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc--------------CcHhhhCeEEEeecccCcc------C-
Confidence 456688999999997 479999999999988888765 4688999988764311000 0
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEe
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 376 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~I 376 (520)
.. .| ...+| ....+.+|. ...+++||||+. .||..++ ..|++|++|
T Consensus 139 --~~--KP---------~p~~~-----~~~~~~~~~-~~~~~l~vgD~~-~di~aA~-~~G~~~i~v 184 (184)
T TIGR01993 139 --LP--KP---------SPQAY-----EKALREAGV-DPERAIFFDDSA-RNIAAAK-ALGMKTVLV 184 (184)
T ss_pred --CC--CC---------CHHHH-----HHHHHHhCC-CccceEEEeCCH-HHHHHHH-HcCCEEeeC
Confidence 00 00 00111 234455676 678999999997 5866555 669999875
No 38
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.61 E-value=0.00012 Score=70.59 Aligned_cols=107 Identities=22% Similarity=0.294 Sum_probs=77.3
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcc
Q 010014 229 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 308 (520)
Q Consensus 229 Yi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~ 308 (520)
.+..-|.+...|+++++. .++.++||+.-..+.....-+ . ..++||.|++....- +.. +.+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-------------g-l~~~Fd~v~~s~~~g--~~K-P~~- 157 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-------------G-LLDYFDAVFISEDVG--VAK-PDP- 157 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-------------C-ChhhhheEEEecccc--cCC-CCc-
Confidence 345568888999999888 899999999777777777765 1 578999998765422 000 011
Q ss_pred ceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhcH
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELE 381 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpELe 381 (520)
++| ..+++.+|. ...++++|||++..||.-++ ..||+|+.|.++-.
T Consensus 158 --------------------~~f-----~~~~~~~g~-~p~~~l~VgD~~~~di~gA~-~~G~~~vwi~~~~~ 203 (229)
T COG1011 158 --------------------EIF-----EYALEKLGV-PPEEALFVGDSLENDILGAR-ALGMKTVWINRGGK 203 (229)
T ss_pred --------------------HHH-----HHHHHHcCC-CcceEEEECCChhhhhHHHH-hcCcEEEEECCCCC
Confidence 122 235677776 57789999999999987666 56999999887653
No 39
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.60 E-value=9.4e-05 Score=70.20 Aligned_cols=94 Identities=24% Similarity=0.323 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceee
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 312 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v 312 (520)
.|++..|+..||++|-++++++|-.=.=+.. ...-+|-+ -|-.|+||. .. .|.
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~-~~~~l~v~------------------fi~~A~KP~--~~----~fr-- 100 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVAR-AAEKLGVP------------------FIYRAKKPF--GR----AFR-- 100 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHh-hhhhcCCc------------------eeecccCcc--HH----HHH--
Confidence 4789999999999999999999944322221 12222311 256688881 11 011
Q ss_pred ccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhc
Q 010014 313 GDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 380 (520)
Q Consensus 313 ~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpEL 380 (520)
..++-++. +.++|+-|||.|+.||+..+ ..|-||++|.|=-
T Consensus 101 -------------------------~Al~~m~l-~~~~vvmVGDqL~TDVlggn-r~G~~tIlV~Pl~ 141 (175)
T COG2179 101 -------------------------RALKEMNL-PPEEVVMVGDQLFTDVLGGN-RAGMRTILVEPLV 141 (175)
T ss_pred -------------------------HHHHHcCC-ChhHEEEEcchhhhhhhccc-ccCcEEEEEEEec
Confidence 12334455 67999999999999999887 6699999999854
No 40
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.57 E-value=0.00011 Score=72.72 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=73.8
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEE--CCCCCCCccCCCCcc
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT--GSAKPGFFHEDNRAN 308 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv--~A~KP~FF~~~~~~~ 308 (520)
..-|.+..+|++|+++|.++.++||++-..+..++.+.-. .++.+|||.++. -+.||
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~-----------~~L~~~f~~~fd~~~g~KP---------- 153 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDA-----------GNLTPYFSGYFDTTVGLKT---------- 153 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccc-----------cchhhhcceEEEeCcccCC----------
Confidence 3458899999999999999999999999999988887532 245555554321 01222
Q ss_pred ceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhc
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 380 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpEL 380 (520)
. -.......+.+|. ...++|||||+. .||..++ ..||+|+++++.=
T Consensus 154 ------------------~-----p~~y~~i~~~lgv-~p~e~lfVgDs~-~Di~AA~-~AG~~ti~v~r~g 199 (220)
T TIGR01691 154 ------------------E-----AQSYVKIAGQLGS-PPREILFLSDII-NELDAAR-KAGLHTGQLVRPG 199 (220)
T ss_pred ------------------C-----HHHHHHHHHHhCc-ChhHEEEEeCCH-HHHHHHH-HcCCEEEEEECCC
Confidence 0 1122445666787 678999999995 8876665 5799999998753
No 41
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.55 E-value=0.00018 Score=67.17 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=71.4
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcc
Q 010014 229 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 308 (520)
Q Consensus 229 Yi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~ 308 (520)
.+...|.+..+|+.|+++|.++.++||+ ..+..+++.+ .|.+|||.|++....+ ..
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~--------------~l~~~f~~v~~~~~~~------~~-- 141 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL--------------GLTDYFDAIVDADEVK------EG-- 141 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc--------------ChHHHCCEeeehhhCC------CC--
Confidence 3667899999999999999999999999 6677766653 5788999988743211 00
Q ss_pred ceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEe
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 376 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~I 376 (520)
.|. ..+| ..+.+-++. ...+++||||.. .||..++ ..||+|++|
T Consensus 142 -------kp~---------~~~~-----~~~~~~~~~-~~~~~v~IgD~~-~di~aA~-~~G~~~i~v 185 (185)
T TIGR02009 142 -------KPH---------PETF-----LLAAELLGV-SPNECVVFEDAL-AGVQAAR-AAGMFAVAV 185 (185)
T ss_pred -------CCC---------hHHH-----HHHHHHcCC-CHHHeEEEeCcH-hhHHHHH-HCCCeEeeC
Confidence 000 0122 235555676 578999999995 7987776 459999875
No 42
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.53 E-value=0.00024 Score=61.15 Aligned_cols=117 Identities=25% Similarity=0.250 Sum_probs=77.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
+...|.+..+|+.|+++|.+++++||+...++...++.+ .+..+|+.|++....+.+-.... . .
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~~~-~-~ 86 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL--------------GLDDYFDPVITSNGAAIYYPKEG-L-F 86 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc--------------CCchhhhheeccchhhhhccccc-c-c
Confidence 345688999999999999999999999988888888764 34577888887766554332211 0 0
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEe
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 376 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~I 376 (520)
. . .....-.++. .+....+.+.++. ...+++||||+. +|+...+ ..||+|++|
T Consensus 87 ~--~-----~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~igD~~-~d~~~~~-~~g~~~i~v 139 (139)
T cd01427 87 L--G-----GGPFDIGKPN----PDKLLAALKLLGV-DPEEVLMVGDSL-NDIEMAK-AAGGLGVAV 139 (139)
T ss_pred c--c-----ccccccCCCC----HHHHHHHHHHcCC-ChhhEEEeCCCH-HHHHHHH-HcCCceeeC
Confidence 0 0 0000000111 1223455666665 578999999999 9977776 459999875
No 43
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.52 E-value=0.00016 Score=68.33 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=64.5
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCC-hhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccce
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSL-WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 310 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~-~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~ 310 (520)
.-|.+..+|+.|++.|.+++++||++ -..+..+...+ | +..+ ....||.
T Consensus 44 ~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~-g-------------l~~~-----~~~~KP~----------- 93 (170)
T TIGR01668 44 AYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL-G-------------IPVL-----PHAVKPP----------- 93 (170)
T ss_pred cChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc-C-------------CEEE-----cCCCCCC-----------
Confidence 35778899999999999999999998 45544444321 2 1111 1222330
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhc
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 380 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpEL 380 (520)
.......++-++. ...+++||||+++.||..++ ..||+|++|-+.-
T Consensus 94 ----------------------p~~~~~~l~~~~~-~~~~~l~IGDs~~~Di~aA~-~aGi~~i~v~~g~ 139 (170)
T TIGR01668 94 ----------------------GCAFRRAHPEMGL-TSEQVAVVGDRLFTDVMGGN-RNGSYTILVEPLV 139 (170)
T ss_pred ----------------------hHHHHHHHHHcCC-CHHHEEEECCcchHHHHHHH-HcCCeEEEEccCc
Confidence 0012234555676 57899999999999988777 5699999997665
No 44
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.48 E-value=0.00043 Score=70.23 Aligned_cols=103 Identities=23% Similarity=0.337 Sum_probs=74.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
...-|.+..+|+.|+++|.++.++||++-.+...++..+ .|..+||.|++...-|.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~--------------~i~~~f~~i~~~d~~~~---------- 155 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM--------------KIGRYFRWIIGGDTLPQ---------- 155 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc--------------CcHhhCeEEEecCCCCC----------
Confidence 344689999999999999999999999988877777763 46788998766432000
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
. .|. ..-...+.+.+|+ ...+++||||+ ..||..++. .||+|++|.-
T Consensus 156 ---~--Kp~--------------p~~~~~~~~~~g~-~~~~~l~IGD~-~~Di~aA~~-aGi~~i~v~~ 202 (272)
T PRK13223 156 ---K--KPD--------------PAALLFVMKMAGV-PPSQSLFVGDS-RSDVLAAKA-AGVQCVALSY 202 (272)
T ss_pred ---C--CCC--------------cHHHHHHHHHhCC-ChhHEEEECCC-HHHHHHHHH-CCCeEEEEec
Confidence 0 000 1112335666676 67899999999 699887775 6999999853
No 45
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.45 E-value=0.00021 Score=68.43 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHhcCCeEEEecCC-ChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcccee
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNS-LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 311 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS-~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~ 311 (520)
-|.+..+|+.|+++|.+++++||+ .-.++..+|.++--.. ......--++||.||+.. +| .. .++.-.
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~-----~~~~~~~~~~Fd~iv~~~-~~---~~--~kp~~~ 115 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITY-----AGKTVPMHSLFDDRIEIY-KP---NK--AKQLEM 115 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCC-----CCCcccHHHhceeeeecc-CC---ch--HHHHHH
Confidence 378899999999999999999999 9999999998852100 011122338999998853 22 00 000000
Q ss_pred eccCCCccccccCCCCCceecCCCHHHHHHHh--cCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 312 VGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL--SIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 312 v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll--~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
+ +..+.+.+ +. ...+++||||... ||. +-+..|++|++|..-
T Consensus 116 ------------------i-----~~~~~~~~~~gl-~p~e~l~VgDs~~-di~-aA~~aGi~~i~v~~g 159 (174)
T TIGR01685 116 ------------------I-----LQKVNKVDPSVL-KPAQILFFDDRTD-NVR-EVWGYGVTSCYCPSG 159 (174)
T ss_pred ------------------H-----HHHhhhcccCCC-CHHHeEEEcChhH-hHH-HHHHhCCEEEEcCCC
Confidence 0 11122222 34 4689999999995 454 456789999999553
No 46
>PRK11587 putative phosphatase; Provisional
Probab=97.37 E-value=0.00045 Score=67.17 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=67.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC----CCCCCccCCC
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDN 305 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A----~KP~FF~~~~ 305 (520)
+..-|.+..+|+.|+++|.++.++||+....+....... | ..+||.|++.. .||
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~-~--------------l~~~~~i~~~~~~~~~KP------- 139 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA-G--------------LPAPEVFVTAERVKRGKP------- 139 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc-C--------------CCCccEEEEHHHhcCCCC-------
Confidence 344688999999999999999999999988776555422 2 24577766531 222
Q ss_pred CccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 306 RANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 306 ~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
. ..+| ....+.+|. ...+++||||+. .||..++ ..|+.|++|-.
T Consensus 140 ----------~-----------p~~~-----~~~~~~~g~-~p~~~l~igDs~-~di~aA~-~aG~~~i~v~~ 183 (218)
T PRK11587 140 ----------E-----------PDAY-----LLGAQLLGL-APQECVVVEDAP-AGVLSGL-AAGCHVIAVNA 183 (218)
T ss_pred ----------C-----------cHHH-----HHHHHHcCC-CcccEEEEecch-hhhHHHH-HCCCEEEEECC
Confidence 0 0111 123455676 579999999996 6776555 66999999853
No 47
>PLN02811 hydrolase
Probab=97.34 E-value=0.00036 Score=67.98 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=65.7
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC------CCCCCccCCCC
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS------AKPGFFHEDNR 306 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A------~KP~FF~~~~~ 306 (520)
-|.+..+|+.|++.|.++.++||+.-.+....+.-. ..|.++||.|++.. .||
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~-------------~~l~~~f~~i~~~~~~~~~~~KP-------- 138 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRH-------------GELFSLMHHVVTGDDPEVKQGKP-------- 138 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHccc-------------HHHHhhCCEEEECChhhccCCCC--------
Confidence 488999999999999999999999876443322111 24788999988755 122
Q ss_pred ccceeeccCCCccccccCCCCCceecCCCHHHHHHHhc---CcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 307 ANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLS---IESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 307 ~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~---~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
.|. +| ....+.++ . ...+++||||+. .||..++ ..|++|++|-.
T Consensus 139 ---------~p~-----------~~-----~~a~~~~~~~~~-~~~~~v~IgDs~-~di~aA~-~aG~~~i~v~~ 185 (220)
T PLN02811 139 ---------APD-----------IF-----LAAARRFEDGPV-DPGKVLVFEDAP-SGVEAAK-NAGMSVVMVPD 185 (220)
T ss_pred ---------CcH-----------HH-----HHHHHHhCCCCC-CccceEEEeccH-hhHHHHH-HCCCeEEEEeC
Confidence 010 11 11222232 4 468999999998 5866555 66999999954
No 48
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.31 E-value=0.00022 Score=70.56 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=67.9
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCC----CCCCccCCC
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFFHEDN 305 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~----KP~FF~~~~ 305 (520)
+..-|.+..+|..||+. .++.++||++.. ++. ..+.+|||.||+... ||
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~--------------~gl~~~fd~i~~~~~~~~~KP------- 164 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PEL--------------FGLGDYFEFVLRAGPHGRSKP------- 164 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHH--------------CCcHHhhceeEecccCCcCCC-------
Confidence 45568899999999975 789999998764 111 346889999886542 22
Q ss_pred CccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 306 RANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 306 ~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
.+ .+| ....+.+|. ...+++||||++..||..++ ..||+|+.|-+.
T Consensus 165 ~p---------------------~~~-----~~a~~~~~~-~~~~~~~VGD~~~~Di~~A~-~aG~~~i~v~~~ 210 (238)
T PRK10748 165 FS---------------------DMY-----HLAAEKLNV-PIGEILHVGDDLTTDVAGAI-RCGMQACWINPE 210 (238)
T ss_pred cH---------------------HHH-----HHHHHHcCC-ChhHEEEEcCCcHHHHHHHH-HCCCeEEEEcCC
Confidence 00 011 122344565 56899999999999998877 479999998764
No 49
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.16 E-value=0.00066 Score=73.83 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=71.4
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccce
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 310 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~ 310 (520)
..-|.+..+|+.||+.|.++.++||+.-.++..+++++ +|.+|||.|++.-.-+. . +
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~--------------~l~~~f~~i~~~d~v~~---~-~----- 386 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY--------------DLDQWVTETFSIEQINS---L-N----- 386 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC--------------CcHhhcceeEecCCCCC---C-C-----
Confidence 34588999999999999999999999999999999874 57899999886432000 0 0
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
.| .+| ....+-+ ...+++||||+. .||..+| ..|++|++|-.
T Consensus 387 -----kP-----------~~~-----~~al~~l---~~~~~v~VGDs~-~Di~aAk-~AG~~~I~v~~ 428 (459)
T PRK06698 387 -----KS-----------DLV-----KSILNKY---DIKEAAVVGDRL-SDINAAK-DNGLIAIGCNF 428 (459)
T ss_pred -----Cc-----------HHH-----HHHHHhc---CcceEEEEeCCH-HHHHHHH-HCCCeEEEEeC
Confidence 00 011 1111112 246899999997 9987775 66999999865
No 50
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.12 E-value=0.00088 Score=60.99 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceee
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 312 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v 312 (520)
.|.+..+|+.|++.|.++.++||+....+...+.+. . .++|+.|++... + ... |
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l--------------~~~f~~i~~~~~-~--~~K---p----- 119 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L--------------GDYFDLILGSDE-F--GAK---P----- 119 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H--------------HhcCcEEEecCC-C--CCC---c-----
Confidence 367999999999999999999999999999999886 2 346888775332 0 010 0
Q ss_pred ccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccc
Q 010014 313 GDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSK 366 (520)
Q Consensus 313 ~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~sk 366 (520)
+ ......+++.++. .. +++||||+ -.|+..++
T Consensus 120 ---~----------------~~~~~~~~~~~~~-~~-~~l~iGDs-~~Di~aa~ 151 (154)
T TIGR01549 120 ---E----------------PEIFLAALESLGL-PP-EVLHVGDN-LNDIEGAR 151 (154)
T ss_pred ---C----------------HHHHHHHHHHcCC-CC-CEEEEeCC-HHHHHHHH
Confidence 0 0112345666776 45 99999999 77887665
No 51
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.09 E-value=0.0011 Score=62.56 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=67.9
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCC---------------hhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEE
Q 010014 229 YINEDRSIVPMLKMLRESGRSTFLVTNSL---------------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 293 (520)
Q Consensus 229 Yi~kd~~l~~~L~~Lr~~GKklFLiTNS~---------------~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv 293 (520)
.+..-|.+..+|+.|+++|.+++++||.. ..+++.+...+ ++. ||-+++
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~--------------gl~--fd~ii~ 90 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ--------------GII--FDDVLI 90 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC--------------CCc--eeEEEE
Confidence 35557899999999999999999999963 33444433332 333 876665
Q ss_pred CCCCCCCccCCCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceE
Q 010014 294 GSAKPGFFHEDNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT 373 (520)
Q Consensus 294 ~A~KP~FF~~~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT 373 (520)
.+.+|. + . +....|. -+-+..+.+.++. ...+++||||. ..|+..++ ..||.|
T Consensus 91 ~~~~~~---~-~------~~~~KP~--------------~~~~~~~~~~~~~-~~~e~l~IGD~-~~Di~~A~-~aGi~~ 143 (161)
T TIGR01261 91 CPHFPD---D-N------CDCRKPK--------------IKLLEPYLKKNLI-DKARSYVIGDR-ETDMQLAE-NLGIRG 143 (161)
T ss_pred CCCCCC---C-C------CCCCCCC--------------HHHHHHHHHHcCC-CHHHeEEEeCC-HHHHHHHH-HCCCeE
Confidence 533331 1 0 0000010 1123345555665 56899999998 67987766 679999
Q ss_pred EEeeh
Q 010014 374 MLVVP 378 (520)
Q Consensus 374 ~~IVp 378 (520)
++|-+
T Consensus 144 i~~~~ 148 (161)
T TIGR01261 144 IQYDE 148 (161)
T ss_pred EEECh
Confidence 99865
No 52
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.96 E-value=0.011 Score=57.86 Aligned_cols=103 Identities=25% Similarity=0.309 Sum_probs=73.1
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcc
Q 010014 229 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 308 (520)
Q Consensus 229 Yi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~ 308 (520)
....-|.++.+|..|+++|.+++++||-+-.++..+...+ .+.+|||+|++... ++.. .|
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~--------------gl~~~F~~i~g~~~---~~~~--KP- 146 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL--------------GLADYFDVIVGGDD---VPPP--KP- 146 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh--------------CCccccceEEcCCC---CCCC--Cc-
Confidence 4566799999999999999999999999999999999983 36899999998221 1111 00
Q ss_pred ceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
+|. ....+++.++. ...+++||||.+. ||..+|.. |-.|++|-
T Consensus 147 -------~P~----------------~l~~~~~~~~~-~~~~~l~VGDs~~-Di~aA~~A-g~~~v~v~ 189 (220)
T COG0546 147 -------DPE----------------PLLLLLEKLGL-DPEEALMVGDSLN-DILAAKAA-GVPAVGVT 189 (220)
T ss_pred -------CHH----------------HHHHHHHHhCC-ChhheEEECCCHH-HHHHHHHc-CCCEEEEE
Confidence 110 01224555666 3459999999985 87777754 56666654
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.91 E-value=0.0036 Score=57.49 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=30.1
Q ss_pred HHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 337 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 337 ~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
..+++.++. ...+++||||+ ..||..++ ..||+|++|.
T Consensus 108 ~~~~~~~~~-~~~e~i~IGDs-~~Di~~A~-~~Gi~~v~i~ 145 (147)
T TIGR01656 108 LEALKRLGV-DASRSLVVGDR-LRDLQAAR-NAGLAAVLLV 145 (147)
T ss_pred HHHHHHcCC-ChHHEEEEcCC-HHHHHHHH-HCCCCEEEec
Confidence 445666676 57899999999 88977775 6799999985
No 54
>PRK06769 hypothetical protein; Validated
Probab=96.91 E-value=0.0013 Score=62.38 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 338 HLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 338 ~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
..++.++. .-.+++||||+. .||..++ ..||+|++|-+.
T Consensus 101 ~~~~~l~~-~p~~~i~IGD~~-~Di~aA~-~aGi~~i~v~~g 139 (173)
T PRK06769 101 QAAEKHGL-DLTQCAVIGDRW-TDIVAAA-KVNATTILVRTG 139 (173)
T ss_pred HHHHHcCC-CHHHeEEEcCCH-HHHHHHH-HCCCeEEEEecC
Confidence 34555665 568999999997 8987776 569999999764
No 55
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.89 E-value=0.0024 Score=60.43 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=63.5
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCCh----hhhH-------HHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCC
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLW----DYTT-------IVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGF 300 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~----~yt~-------~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~F 300 (520)
.-|....+|+.|++.|.++.++||++- .|+. ..+..++.. ... +||-|++...-+.
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~g~--~f~~i~~~~~~~~- 96 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLAD----------RGG--RLDGIYYCPHHPE- 96 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH----------cCC--ccceEEECCCCCC-
Confidence 358899999999999999999999973 1222 122233321 111 3776664322100
Q ss_pred ccCCCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 301 FHEDNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 301 F~~~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
+ . +....|. ..+ .....+.+|. ...+++||||+. .||..++ ..||++++|-.
T Consensus 97 --~-~------~~~~KP~---------p~~-----~~~~~~~l~~-~~~~~~~VgDs~-~Di~~A~-~aG~~~i~v~~ 148 (181)
T PRK08942 97 --D-G------CDCRKPK---------PGM-----LLSIAERLNI-DLAGSPMVGDSL-RDLQAAA-AAGVTPVLVRT 148 (181)
T ss_pred --C-C------CcCCCCC---------HHH-----HHHHHHHcCC-ChhhEEEEeCCH-HHHHHHH-HCCCeEEEEcC
Confidence 0 0 0000000 011 2234556676 578999999997 5987776 56998888754
No 56
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.68 E-value=0.0023 Score=61.07 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=61.7
Q ss_pred hHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeeccC
Q 010014 236 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDI 315 (520)
Q Consensus 236 l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~ 315 (520)
...+|+.|++.|.++.++||++-.++..+++.+ .|..|||.|++...-+. . +
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~--------------gl~~~f~~~~~~~~~~~---K-P---------- 162 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH--------------GLEILFPVQIWMEDCPP---K-P---------- 162 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc--------------CchhhCCEEEeecCCCC---C-c----------
Confidence 378999999999999999999999999998864 47899998887433110 0 0
Q ss_pred CCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccc
Q 010014 316 SPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 367 (520)
Q Consensus 316 ~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk 367 (520)
.|. + .....+-+|. ...+++||||.. .||..+++
T Consensus 163 ~p~-----------~-----~~~~~~~~~~-~~~~~i~vGD~~-~Di~aA~~ 196 (197)
T TIGR01548 163 NPE-----------P-----LILAAKALGV-EACHAAMVGDTV-DDIITGRK 196 (197)
T ss_pred CHH-----------H-----HHHHHHHhCc-CcccEEEEeCCH-HHHHHHHh
Confidence 010 1 1223445676 578999999998 58876653
No 57
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.62 E-value=0.032 Score=55.51 Aligned_cols=114 Identities=20% Similarity=0.224 Sum_probs=75.5
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCC
Q 010014 225 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHED 304 (520)
Q Consensus 225 np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~ 304 (520)
.|-.+|.||+.|+++|..||..+ ..+-||++=.-+..+.+.| | =.|.||.||+--.
T Consensus 94 LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~L-G-------------ieDcFegii~~e~-------- 149 (244)
T KOG3109|consen 94 LPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKL-G-------------IEDCFEGIICFET-------- 149 (244)
T ss_pred CcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHh-C-------------hHHhccceeEeec--------
Confidence 46667899999999999999976 5556999999999999997 3 2789999986321
Q ss_pred CCccc-eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhc
Q 010014 305 NRANL-FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 380 (520)
Q Consensus 305 ~~~~~-~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpEL 380 (520)
.++ . -.+.. .| +.+......+..|+.+..++++|-|+ .+-|...| ..||+|++|-.|=
T Consensus 150 ~np-~~~~~vc-KP--------------~~~afE~a~k~agi~~p~~t~FfDDS-~~NI~~ak-~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 150 LNP-IEKTVVC-KP--------------SEEAFEKAMKVAGIDSPRNTYFFDDS-ERNIQTAK-EVGLKTVLVGREH 208 (244)
T ss_pred cCC-CCCceee-cC--------------CHHHHHHHHHHhCCCCcCceEEEcCc-hhhHHHHH-hccceeEEEEeee
Confidence 111 1 00110 01 11223334556666434556666555 56777766 4599999998764
No 58
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.57 E-value=0.0029 Score=57.06 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHhcCCeEEEecCC-ChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcccee
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNS-LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 311 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS-~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~ 311 (520)
-|.+..+|+.||++|.++.++||+ .-.++..+++.. |. . +.-..+.++||.+++...||. +
T Consensus 31 ~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~-~~-~-----~~i~~l~~~f~~~~~~~~~pk-------p---- 92 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF-ED-F-----GIIFPLAEYFDPLTIGYWLPK-------S---- 92 (128)
T ss_pred HHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc-cc-c-----ccchhhHhhhhhhhhcCCCcH-------H----
Confidence 367889999999999999999999 899999988764 20 0 000116888988887755441 1
Q ss_pred eccCCCccccccCCCCCceecCCCHHHHHHHhc--CcCCCcEEEEcccccc
Q 010014 312 VGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLS--IESSSQVLYVGDHIYG 360 (520)
Q Consensus 312 v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~--~~~G~~VLY~GDHI~~ 360 (520)
.. .....+.+| + ...+++||||....
T Consensus 93 -----------------~~-----~~~a~~~lg~~~-~p~~~l~igDs~~n 120 (128)
T TIGR01681 93 -----------------PR-----LVEIALKLNGVL-KPKSILFVDDRPDN 120 (128)
T ss_pred -----------------HH-----HHHHHHHhcCCC-CcceEEEECCCHhH
Confidence 01 123455567 6 67999999998753
No 59
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.57 E-value=0.0064 Score=57.44 Aligned_cols=110 Identities=21% Similarity=0.207 Sum_probs=63.7
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCCh----hhhHH-------HHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCC--
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLW----DYTTI-------VMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPG-- 299 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~----~yt~~-------vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~-- 299 (520)
-|.+..+|..|+++|.++.++||++- .|+.. -|..++. ...-. ||.|+....-|.
T Consensus 28 ~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~-~~~i~~~~~~~~~~ 95 (176)
T TIGR00213 28 IDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLA-----------ERDVD-LDGIYYCPHHPEGV 95 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH-----------HcCCC-ccEEEECCCCCccc
Confidence 48899999999999999999999983 24432 2222222 11112 666655432211
Q ss_pred -CccCCCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 300 -FFHEDNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 300 -FF~~~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
-|++. +. .-++. -+-+....+.++. ...+++||||.. .||..++ ..||+|+..|.
T Consensus 96 ~~~~~~-------~~----------~~KP~----p~~~~~a~~~~~~-~~~~~v~VGDs~-~Di~aA~-~aG~~~~i~v~ 151 (176)
T TIGR00213 96 EEFRQV-------CD----------CRKPK----PGMLLQARKELHI-DMAQSYMVGDKL-EDMQAGV-AAKVKTNVLVR 151 (176)
T ss_pred ccccCC-------CC----------CCCCC----HHHHHHHHHHcCc-ChhhEEEEcCCH-HHHHHHH-HCCCcEEEEEe
Confidence 11100 00 00000 1112345566676 679999999986 6977666 56999954443
No 60
>PRK11590 hypothetical protein; Provisional
Probab=96.31 E-value=0.036 Score=53.95 Aligned_cols=94 Identities=18% Similarity=0.063 Sum_probs=60.3
Q ss_pred ccCCChHHHH-HHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccc
Q 010014 231 NEDRSIVPML-KMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 309 (520)
Q Consensus 231 ~kd~~l~~~L-~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~ 309 (520)
..-|.....| +.+++.|.++.++|||+-.|+..++.++- |..-.. ||. + +..
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~--------------~~~~~~-~i~-t-~l~---------- 147 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP--------------WLPRVN-LIA-S-QMQ---------- 147 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc--------------ccccCc-eEE-E-EEE----------
Confidence 4468899999 56888999999999999999999998852 222222 231 1 111
Q ss_pred eeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccc
Q 010014 310 FQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDI 362 (520)
Q Consensus 310 ~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Di 362 (520)
+. ..+.+.....|-.|=+..+.+.++. .....-..|||+ +|+
T Consensus 148 --~~-------~tg~~~g~~c~g~~K~~~l~~~~~~-~~~~~~aY~Ds~-~D~ 189 (211)
T PRK11590 148 --RR-------YGGWVLTLRCLGHEKVAQLERKIGT-PLRLYSGYSDSK-QDN 189 (211)
T ss_pred --EE-------EccEECCccCCChHHHHHHHHHhCC-CcceEEEecCCc-ccH
Confidence 10 0112222235556666777777774 445555779998 886
No 61
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.16 E-value=0.012 Score=55.77 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=29.3
Q ss_pred hCcccccccCCChHHHHHHHHhcCCeEEEecCCChh
Q 010014 224 KDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWD 259 (520)
Q Consensus 224 ~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~ 259 (520)
.+|++....-|.+..+|++|++.|.++.++||.+-.
T Consensus 35 ~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~ 70 (166)
T TIGR01664 35 TSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGI 70 (166)
T ss_pred CChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 455555545688999999999999999999998753
No 62
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.15 E-value=0.00092 Score=67.35 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=67.0
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEEC-CCCCCCccCCCCccceee
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG-SAKPGFFHEDNRANLFQV 312 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~-A~KP~FF~~~~~~~~~~v 312 (520)
+.+...++.|++.|+++|+.||.+-.|....... ..+-.+|+.|... .++|.++.. +.+
T Consensus 123 ~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~--------------~g~g~~~~~i~~~~~~~~~~~gK-P~p----- 182 (257)
T TIGR01458 123 QILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLA--------------LDVGPFVTALEYATDTKATVVGK-PSK----- 182 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCC--------------CCchHHHHHHHHHhCCCceeecC-CCH-----
Confidence 3456677888888999999999998777543321 2456777766543 223333322 000
Q ss_pred ccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 313 GDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 313 ~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
.+| ....+.++. ...++++|||++..||.-++ ..||+|++|..-
T Consensus 183 ----------------~~~-----~~~~~~~~~-~~~~~~~vGD~~~~Di~~a~-~~G~~~i~v~~G 226 (257)
T TIGR01458 183 ----------------TFF-----LEALRATGC-EPEEAVMIGDDCRDDVGGAQ-DCGMRGIQVRTG 226 (257)
T ss_pred ----------------HHH-----HHHHHHhCC-ChhhEEEECCCcHHHHHHHH-HcCCeEEEECCC
Confidence 011 123344565 57899999999999988777 559999999543
No 63
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.01 E-value=0.21 Score=52.33 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=34.1
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
+...|....+|+.||+.|.++.++||+...|++.++..+
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L 218 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL 218 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc
Confidence 345788899999999999999999999999998887753
No 64
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.86 E-value=0.023 Score=60.30 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=65.3
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCC----hhhh-------HHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCC
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSL----WDYT-------TIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 298 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~----~~yt-------~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP 298 (520)
+...|.+..+|..|+++|.+++++||.+ -.|. +..|.-++.. ..+ +||.|+..+..|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~----------~gl--~fd~i~i~~~~~ 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES----------QGI--KFDEVLICPHFP 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH----------cCC--ceeeEEEeCCcC
Confidence 4557899999999999999999999951 1111 1122223321 122 277666554332
Q ss_pred CCccCCCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 299 GFFHEDNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 299 ~FF~~~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
++.. .. . .|. -+-+..+.+.++. ...+++||||.. +|+..++ ..|+++++|=|
T Consensus 97 ---sd~~---~~--r--KP~--------------p~~l~~a~~~l~v-~~~~svmIGDs~-sDi~aAk-~aGi~~I~v~~ 149 (354)
T PRK05446 97 ---EDNC---SC--R--KPK--------------TGLVEEYLAEGAI-DLANSYVIGDRE-TDVQLAE-NMGIKGIRYAR 149 (354)
T ss_pred ---cccC---CC--C--CCC--------------HHHHHHHHHHcCC-CcccEEEEcCCH-HHHHHHH-HCCCeEEEEEC
Confidence 1100 00 0 000 1112334444565 568999999985 8987776 66999999954
No 65
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=95.56 E-value=0.044 Score=50.53 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=42.9
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC
Q 010014 228 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 295 (520)
Q Consensus 228 kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A 295 (520)
-++..-|.+..+|..|+ .|.++.++||+.-+|+..+++.+ | ..| .+||.|++..
T Consensus 42 ~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-~-----------~~~-~~f~~i~~~~ 95 (148)
T smart00577 42 VYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-D-----------PKK-YFGYRRLFRD 95 (148)
T ss_pred EEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-C-----------cCC-CEeeeEEECc
Confidence 34455799999999998 57999999999999999999876 3 222 5678887753
No 66
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.43 E-value=0.21 Score=49.24 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=72.0
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccce
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 310 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~ 310 (520)
..-|.+..+|..|++.|.++-+.|||+-.-+..+++-+-- .+|||.+|+.+.=+. +
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl--------------~~~f~~~v~~~dv~~----~------ 141 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGL--------------LDYFDVIVTADDVAR----G------ 141 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccC--------------hhhcchhccHHHHhc----C------
Confidence 3457899999999999999999999998877777765422 778998887543110 0
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
.| ..-+|.. -.+.||. ...+++.|.|...| +.+-+..|-+++.|..
T Consensus 142 -----KP---------~Pd~yL~-----Aa~~Lgv-~P~~CvviEDs~~G--i~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 142 -----KP---------APDIYLL-----AAERLGV-DPEECVVVEDSPAG--IQAAKAAGMRVVGVPA 187 (221)
T ss_pred -----CC---------CCHHHHH-----HHHHcCC-ChHHeEEEecchhH--HHHHHHCCCEEEEecC
Confidence 00 0112211 2355666 67899999999988 5566678988888875
No 67
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.36 E-value=0.057 Score=50.90 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=66.7
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcccee
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 311 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~ 311 (520)
..|....+|+.|+++|.+++++||+.-.++..++..+ | ...+|+.++.... -++++-. +...
T Consensus 81 ~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-g-------------~~~~~~~~~~~~~-~g~~~p~---~~~~ 142 (201)
T TIGR01491 81 LRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-N-------------PDYVYSNELVFDE-KGFIQPD---GIVR 142 (201)
T ss_pred CCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-C-------------CCeEEEEEEEEcC-CCeEecc---eeeE
Confidence 4578999999999999999999999999999999875 3 2345655443321 1111110 0000
Q ss_pred eccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEE
Q 010014 312 VGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTML 375 (520)
Q Consensus 312 v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~ 375 (520)
.+ +..++ .-...+.+.++. ...+++||||+. .|+-..+ ..|+..++
T Consensus 143 ~~----------~~~k~-----~~~~~~~~~~~~-~~~~~i~iGDs~-~D~~~a~-~ag~~~a~ 188 (201)
T TIGR01491 143 VT----------FDNKG-----EAVERLKRELNP-SLTETVAVGDSK-NDLPMFE-VADISISL 188 (201)
T ss_pred Ec----------cccHH-----HHHHHHHHHhCC-CHHHEEEEcCCH-hHHHHHH-hcCCeEEE
Confidence 00 00111 113334455665 568999999995 6976666 45885444
No 68
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.33 E-value=0.038 Score=53.30 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=34.9
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
+...|.++.+|+.|+++|.++.++||+.-.++..++..+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 122 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL 122 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 346789999999999999999999999999999888874
No 69
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=95.22 E-value=0.27 Score=45.71 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=43.4
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEEC
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 294 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~ 294 (520)
+...|.+..+|+.|++.|-++.++||+.-.++..++..+ +|.++||.|++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI--------------GEKDVFIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc--------------CChhheeEEecc
Confidence 445678999999999999999999999999999888763 578899998853
No 70
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.09 E-value=0.0037 Score=63.52 Aligned_cols=37 Identities=35% Similarity=0.549 Sum_probs=30.5
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 339 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 339 l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
+.+.++. ...++++|||.+..||.-++. .||+|++|-
T Consensus 211 ~~~~~~~-~~~~~lmIGD~~~tDI~~A~~-aGi~si~V~ 247 (279)
T TIGR01452 211 ITENFSI-DPARTLMVGDRLETDILFGHR-CGMTTVLVL 247 (279)
T ss_pred HHHHhCC-ChhhEEEECCChHHHHHHHHH-cCCcEEEEC
Confidence 4455666 578999999999999988774 699999994
No 71
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.03 E-value=0.11 Score=53.89 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=62.0
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHh---hccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccce
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF---LCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 310 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~y---l~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~ 310 (520)
|.+..+|+.|++.|.++.++||.+...+..++.. ++| ..++|+.|+.. .||.
T Consensus 34 ~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~-------------~~~~f~~~~~~-~~pk----------- 88 (320)
T TIGR01686 34 KTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFIL-------------QAEDFDARSIN-WGPK----------- 88 (320)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccC-------------cHHHeeEEEEe-cCch-----------
Confidence 6788999999999999999999999999999986 223 36788888665 3330
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccc
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKV 368 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~ 368 (520)
.-+...+.+-+++ .-.+++||||+.+ |+...+..
T Consensus 89 ----------------------~~~i~~~~~~l~i-~~~~~vfidD~~~-d~~~~~~~ 122 (320)
T TIGR01686 89 ----------------------SESLRKIAKKLNL-GTDSFLFIDDNPA-ERANVKIT 122 (320)
T ss_pred ----------------------HHHHHHHHHHhCC-CcCcEEEECCCHH-HHHHHHHH
Confidence 1123334455665 4578899999876 66665543
No 72
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.49 E-value=0.0073 Score=59.92 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=60.6
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeec
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVG 313 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~ 313 (520)
|.+..+|..+++.|.++ ++||.+..|....+.. +| .-.+|+.+..-+.+|.+... +.+.
T Consensus 141 ~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~-~~-------------~g~~~~~i~~~g~~~~~~gK-P~~~----- 199 (242)
T TIGR01459 141 DEFDELFAPIVARKIPN-ICANPDRGINQHGIYR-YG-------------AGYYAELIKQLGGKVIYSGK-PYPA----- 199 (242)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCCEeccCCCceE-ec-------------ccHHHHHHHHhCCcEecCCC-CCHH-----
Confidence 45667888888888775 8999999888755432 22 22345543212223322111 0000
Q ss_pred cCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 314 DISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 314 ~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
+ .....+.++.....+++||||.+..||.-++ ..|++|++|.
T Consensus 200 ----------------~-----~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~-~~G~~~i~v~ 241 (242)
T TIGR01459 200 ----------------I-----FHKALKECSNIPKNRMLMVGDSFYTDILGAN-RLGIDTALVL 241 (242)
T ss_pred ----------------H-----HHHHHHHcCCCCcccEEEECCCcHHHHHHHH-HCCCeEEEEe
Confidence 1 1223444453123589999999999988777 4699999873
No 73
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.16 E-value=0.29 Score=47.68 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=36.3
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhc
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 269 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~ 269 (520)
+...|.+..+|+.|+++|.+++++||+.-.|+..++..++
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 112 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLI 112 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhC
Confidence 4557899999999999999999999999999999998763
No 74
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=93.95 E-value=0.23 Score=47.64 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=58.1
Q ss_pred CCChHHHHHHHHhcCC--eEEEecCCC-------hhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccC
Q 010014 233 DRSIVPMLKMLRESGR--STFLVTNSL-------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 303 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GK--klFLiTNS~-------~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~ 303 (520)
.|++..|++++|+.+. ++.+++||- ..-+..+-+- +| ..++.-.|+||+=
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~-lg-----------------Ipvl~h~~kKP~~--- 119 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKA-LG-----------------IPVLRHRAKKPGC--- 119 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHh-hC-----------------CcEEEeCCCCCcc---
Confidence 3678899999999864 699999993 3333333332 22 3455566777711
Q ss_pred CCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcC----cCCCcEEEEcccccccccccccccCceEEEe
Q 010014 304 DNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSI----ESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 376 (520)
Q Consensus 304 ~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~----~~G~~VLY~GDHI~~Dil~skk~~gWrT~~I 376 (520)
...+.+.++. .+.+++.-|||.++.||+-... .|-.|++|
T Consensus 120 --------------------------------~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~-~G~~tilv 163 (168)
T PF09419_consen 120 --------------------------------FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNR-MGSYTILV 163 (168)
T ss_pred --------------------------------HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhc-cCceEEEE
Confidence 1112222221 2468999999999999999886 46556655
No 75
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=93.93 E-value=0.019 Score=53.31 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=55.4
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECC----CCCCCccCCCC
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDNR 306 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A----~KP~FF~~~~~ 306 (520)
..-|.+..+|+ ++.++||++-.+....+..+ ...++||.||+.- .|| .
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~v~~~~~~~~~KP-------~ 141 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQA--------------GLPWYFDRAFSVDTVRAYKP-------D 141 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC--------------CCHHHHhhhccHhhcCCCCC-------C
Confidence 34577778887 37899999999999888775 3577899875432 122 0
Q ss_pred ccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccc
Q 010014 307 ANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 367 (520)
Q Consensus 307 ~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk 367 (520)
..+| ....+.+|. ...+++|||||. .||..+++
T Consensus 142 ---------------------p~~f-----~~~~~~~~~-~p~~~l~vgD~~-~Di~~A~~ 174 (175)
T TIGR01493 142 ---------------------PVVY-----ELVFDTVGL-PPDRVLMVAAHQ-WDLIGARK 174 (175)
T ss_pred ---------------------HHHH-----HHHHHHHCC-CHHHeEeEecCh-hhHHHHhc
Confidence 1122 223455676 578999999994 79877664
No 76
>PLN02954 phosphoserine phosphatase
Probab=93.45 E-value=0.45 Score=45.99 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=34.1
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
..|.+..+|+.|+++|.++.++||+.-.++..++..+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~ 121 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL 121 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh
Confidence 4589999999999999999999999999999998874
No 77
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=93.45 E-value=0.43 Score=48.98 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.2
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhc
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 269 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~ 269 (520)
|.-..+|++|+++|+++.++||++-.=-..+...|-
T Consensus 27 pga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~ 62 (269)
T COG0647 27 PGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLS 62 (269)
T ss_pred chHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 667799999999999999999998655554444443
No 78
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=93.32 E-value=0.054 Score=51.68 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeeccCCC
Q 010014 238 PMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISP 317 (520)
Q Consensus 238 ~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~~~ 317 (520)
.-+++|++.|.++.++||.+..+++..++.+ | +.++|+.+ ||. +
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l-g-------------i~~~f~~~-----kpk-------p---------- 84 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEEL-K-------------IKRFHEGI-----KKK-------T---------- 84 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHC-C-------------CcEEEecC-----CCC-------H----------
Confidence 4677888999999999999999999999987 3 34566522 211 0
Q ss_pred ccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEE
Q 010014 318 GLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTM 374 (520)
Q Consensus 318 ~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~ 374 (520)
-....+.+.++. ...+++||||.. .|+.-.+. .|+.-+
T Consensus 85 ----------------~~~~~~~~~l~~-~~~ev~~iGD~~-nDi~~~~~-ag~~~a 122 (169)
T TIGR02726 85 ----------------EPYAQMLEEMNI-SDAEVCYVGDDL-VDLSMMKR-VGLAVA 122 (169)
T ss_pred ----------------HHHHHHHHHcCc-CHHHEEEECCCH-HHHHHHHH-CCCeEE
Confidence 013345566676 578999999997 79776664 465543
No 79
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=93.26 E-value=0.17 Score=52.56 Aligned_cols=68 Identities=25% Similarity=0.230 Sum_probs=54.8
Q ss_pred ccchhHHHHHhCccccc-ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEE
Q 010014 214 RDGTLKQMVAKDPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 292 (520)
Q Consensus 214 ~~G~lk~~v~~np~kYi-~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVI 292 (520)
.||+|-.. ++=| .+||.+..+|+.|+++|.++.|+||+.-+++...|+.+ ....|||+||
T Consensus 133 LDgTLi~~-----~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l--------------GLd~YFdvII 193 (301)
T TIGR01684 133 LDSTLITD-----EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV--------------KLDRYFDIII 193 (301)
T ss_pred cCCCCcCC-----CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc--------------CCCcccCEEE
Confidence 47887533 4434 56899999999999999999999999999999888874 3468999999
Q ss_pred ECCCCCCC
Q 010014 293 TGSAKPGF 300 (520)
Q Consensus 293 v~A~KP~F 300 (520)
++.....-
T Consensus 194 s~Gdv~~~ 201 (301)
T TIGR01684 194 SGGHKAEE 201 (301)
T ss_pred ECCccccC
Confidence 98876433
No 80
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.23 E-value=0.3 Score=46.40 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
.|....+|+.++++|.++.++|||+-.++..+++++
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l 124 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL 124 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc
Confidence 467888999999999999999999999999999875
No 81
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=92.50 E-value=0.26 Score=51.26 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=53.0
Q ss_pred ccchhHHHHHhCccccc-ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEE
Q 010014 214 RDGTLKQMVAKDPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 292 (520)
Q Consensus 214 ~~G~lk~~v~~np~kYi-~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVI 292 (520)
.||+|-.. ++=| .++|.+..+|.+|++.|.++.++||.+-+++...++.+ ...++||+||
T Consensus 135 ~D~TL~~~-----~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l--------------gL~~yFDvII 195 (303)
T PHA03398 135 LDSTLITD-----EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET--------------KLEGYFDIII 195 (303)
T ss_pred cCCCccCC-----CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc--------------CCCccccEEE
Confidence 46877543 3333 56899999999999999999999999999998888764 3469999999
Q ss_pred ECCCCC
Q 010014 293 TGSAKP 298 (520)
Q Consensus 293 v~A~KP 298 (520)
+.....
T Consensus 196 ~~g~i~ 201 (303)
T PHA03398 196 CGGRKA 201 (303)
T ss_pred ECCCcc
Confidence 987644
No 82
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.48 E-value=0.2 Score=50.95 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=67.0
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceee
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 312 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v 312 (520)
.|....+|++|++.|.+++++||.+..++..++.++-- ...+||.|+....-+.|..+.
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~-------------~~~~f~~i~~~~~~~~~~~~~-------- 247 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQ-------------TDIWFDDLIGRPPDMHFQREQ-------- 247 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHH-------------cCCchhhhhCCcchhhhcccC--------
Confidence 47788999999999999999999999999999999822 123788877666333333221
Q ss_pred ccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEe
Q 010014 313 GDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 376 (520)
Q Consensus 313 ~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~I 376 (520)
....|.. .++ ...|.+ ++...-.+++||||..+ | ..+-+..|-.+++|
T Consensus 248 ~~~kp~p---------~~~----~~~l~~-~~~~~~~~~~~vgD~~~-d-~~~a~~~Gi~~i~v 295 (300)
T PHA02530 248 GDKRPDD---------VVK----EEIFWE-KIAPKYDVLLAVDDRDQ-V-VDMWRRIGLECWQV 295 (300)
T ss_pred CCCCCcH---------HHH----HHHHHH-HhccCceEEEEEcCcHH-H-HHHHHHhCCeEEEe
Confidence 1001100 011 011222 23212378999999965 3 34444567777766
No 83
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=92.35 E-value=0.2 Score=47.30 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCC--CCCCccCCCCccce
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA--KPGFFHEDNRANLF 310 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~--KP~FF~~~~~~~~~ 310 (520)
-|....+|+.||+.|.++.++|+.+-..+..+.+.+ | ++|.+|.... ||
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-g----------------i~~~~v~a~~~~kP------------ 179 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-G----------------IFDSIVFARVIGKP------------ 179 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-T----------------SCSEEEEESHETTT------------
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccc-c----------------cccccccccccccc------------
Confidence 378999999999999999999999999999999964 4 1333322222 22
Q ss_pred eeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccc
Q 010014 311 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSK 366 (520)
Q Consensus 311 ~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~sk 366 (520)
. .++ ...+.+.++. .+.+|++|||.+ .|+...|
T Consensus 180 -------~---------~k~-----~~~~i~~l~~-~~~~v~~vGDg~-nD~~al~ 212 (215)
T PF00702_consen 180 -------E---------PKI-----FLRIIKELQV-KPGEVAMVGDGV-NDAPALK 212 (215)
T ss_dssp -------H---------HHH-----HHHHHHHHTC-TGGGEEEEESSG-GHHHHHH
T ss_pred -------c---------chh-----HHHHHHHHhc-CCCEEEEEccCH-HHHHHHH
Confidence 0 001 1346777886 567999999999 9976544
No 84
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=92.35 E-value=0.86 Score=44.27 Aligned_cols=40 Identities=5% Similarity=0.145 Sum_probs=36.4
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 229 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 229 Yi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
.+.-.|.+..+|+.|++.|.++.++|||.-.|+..++..+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 4566789999999999999999999999999999999876
No 85
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=91.77 E-value=0.12 Score=48.09 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=57.3
Q ss_pred HHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeeccCCCc
Q 010014 239 MLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISPG 318 (520)
Q Consensus 239 ~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~~~~ 318 (520)
.|++|+++|.+++++||.+...+..++..+ | +.++|+- .||
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~-g-------------i~~~~~~-----~~~-------------------- 76 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL-G-------------ITHLYQG-----QSN-------------------- 76 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc-C-------------CCEEEec-----ccc--------------------
Confidence 699999999999999999999888877664 2 2344431 111
Q ss_pred cccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 319 LLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 319 ~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
+ .--...+++.++. ...+++||||+. .|+...+.. |- +++|-+-
T Consensus 77 --------k-----~~~~~~~~~~~~~-~~~~~~~vGDs~-~D~~~~~~a-g~-~~~v~~~ 120 (154)
T TIGR01670 77 --------K-----LIAFSDILEKLAL-APENVAYIGDDL-IDWPVMEKV-GL-SVAVADA 120 (154)
T ss_pred --------h-----HHHHHHHHHHcCC-CHHHEEEECCCH-HHHHHHHHC-CC-eEecCCc
Confidence 0 0012445566676 568999999997 898776644 43 4666543
No 86
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=91.46 E-value=0.14 Score=41.60 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=33.8
Q ss_pred HHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhc
Q 010014 337 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 380 (520)
Q Consensus 337 ~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpEL 380 (520)
....+.++. ...++++|||++..||.-.+ ..||+|++|.--.
T Consensus 11 ~~a~~~~~~-~~~~~~~VGD~~~~Di~~a~-~~G~~~ilV~tG~ 52 (75)
T PF13242_consen 11 EQALKRLGV-DPSRCVMVGDSLETDIEAAK-AAGIDTILVLTGV 52 (75)
T ss_dssp HHHHHHHTS-GGGGEEEEESSTTTHHHHHH-HTTSEEEEESSSS
T ss_pred HHHHHHcCC-CHHHEEEEcCCcHhHHHHHH-HcCCcEEEECCCC
Confidence 345556666 56899999999999998887 5699999997654
No 87
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=91.06 E-value=0.004 Score=66.36 Aligned_cols=199 Identities=10% Similarity=-0.198 Sum_probs=134.4
Q ss_pred CCCCCceEEeCcccCCCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccceeeecCCC
Q 010014 40 IDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGLVLDKKRG 119 (520)
Q Consensus 40 ~~~~~~VF~Nr~L~L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGLv~D~~~G 119 (520)
+..+-.++++++|... +.+.+++++|++. |..+..+.+.|.+--..|. ..++|...++..+++-++++|+.++...+
T Consensus 37 TL~~Y~~~~~esLay~-~~~~~l~~~Gyp~-~ll~~~~d~~f~~rGL~ld-~~~GN~lKld~~~~vl~a~hg~rfls~~~ 113 (424)
T KOG2469|consen 37 TLARYNLPEMESLAYD-LAQFLLKDKGYPN-ELLSTSFDWNFPCRGLVLD-KERGNLLKLDRFGYVLRAAHGTRFLSNEE 113 (424)
T ss_pred chhhhcccchHHHHHH-HHHHHHHhcCChh-hhhccccCccceeeeeEEe-ccCCceeeeeccCceeeeccccccccccc
Confidence 4446679999999999 9999999999999 7777777777776556666 58899877888899999999999999999
Q ss_pred cEEeecCCCcEEEEeccCccCCHHHHHHHhcCccc-cccCCCCceeeeccccchHHHHHHHHHHH-HHhcCCCCCCCCCC
Q 010014 120 NILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDYALIDTLFSLAEAYLFAQLVD-FMDNNPGKDSKSTD 197 (520)
Q Consensus 120 nlLKlD~~g~I~~a~hG~~~ls~eEi~~~Y~~~~i-~~~~~~~~~~~ldtlFslpe~~L~a~lVd-~~d~~~~~~~~~~~ 197 (520)
+..+.++++ -.+++ +...+ +..|+-+. .+.-.+.+|+....++..+ .++.++..+ ..
T Consensus 114 ~~eiyg~~~---------~~~~~-------~~~~~l~t~F~~~e--a~~~aq~vd~~d~~~~~~~~~~dyk~~~~---~v 172 (424)
T KOG2469|consen 114 ISEIYGRKL---------VRLSD-------SRYYLLNTLFSMPE--ADLFAQAVDFLDNGPEYGPVDMDYKPGWK---DV 172 (424)
T ss_pred hhhhccccc---------ccccC-------chhhhhhhhhhchh--HHHHHhhcchhhcCCccCccchhhcchHH---HH
Confidence 999999987 22222 22222 12222221 1112344444444444421 112222111 13
Q ss_pred hHHHHHHHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHH
Q 010014 198 YVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVM 265 (520)
Q Consensus 198 y~~l~~DV~~Avd~~H~~G~lk~~v~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM 265 (520)
+++++.+..++.-..|..|...+.|..++ +++. .+....-.-+..--+ +.++.||++.-++++.|
T Consensus 173 ~~~~~~~h~~~~lk~~~~~~pek~V~~d~-~~v~-~l~~~r~sGKk~fl~-Tns~~~ytd~~mt~~~~ 237 (424)
T KOG2469|consen 173 RAAGNAVHLYGLLKKKMMGKPERYVVYDG-TIVP-LLSMLRDSGKKTFLH-TNSDWDYTDIFMAFHYG 237 (424)
T ss_pred HHHHhHHHHHHHHHHHHhcCCCceeeecC-cccc-chHHHHhhccceEEe-eccccchhhHHHHHHhC
Confidence 56788888888888899999999887664 4443 333333333333334 78999999999999999
No 88
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=89.09 E-value=0.61 Score=46.26 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=37.3
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhH--HHHHhhccCcCCCCCCCCCCCCcc-CccEEEECC
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTT--IVMNFLCGSHTLDGGITCNSDWLL-YFDVVITGS 295 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~--~vM~yl~g~~~~~~~~~~~~dWr~-~FDvVIv~A 295 (520)
.-|....+|++|+++|+++.++||+.-.... ..+..+ .... +||.||+.+
T Consensus 25 ~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~--------------gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL--------------GINADLPEMIISSG 77 (242)
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC--------------CCCccccceEEccH
Confidence 3578899999999999999999999876554 223322 2344 789888865
No 89
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=89.09 E-value=2.7 Score=42.32 Aligned_cols=115 Identities=17% Similarity=0.322 Sum_probs=71.4
Q ss_pred ccCCChHHHHHHH--HhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCcc
Q 010014 231 NEDRSIVPMLKML--RESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 308 (520)
Q Consensus 231 ~kd~~l~~~L~~L--r~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~ 308 (520)
.-+|.++.+++.+ ...|-.+.+|++|.--|.+.++..- .=+++|+=|+++ |..|.+..+
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~--------------gl~~~f~~I~TN---pa~~~~~G~-- 131 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH--------------GLRDCFSEIFTN---PACFDADGR-- 131 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC--------------CCccccceEEeC---CceecCCce--
Confidence 3467889999999 4578999999999999999999863 347899998887 456654221
Q ss_pred ceeeccCCCccccccCCCCCceecCCC---HHHHHHHhcCc--CC---CcEEEEcccccccccccccccCceEEE
Q 010014 309 LFQVGDISPGLLLKEKNGTCRIFQGGS---VGHLHKLLSIE--SS---SQVLYVGDHIYGDILRSKKVLGWRTML 375 (520)
Q Consensus 309 ~~~v~~~~~~~~~~~~l~~g~vY~gGn---~~~l~~ll~~~--~G---~~VLY~GDHI~~Dil~skk~~gWrT~~ 375 (520)
..|..... +.+. -++-| ...|.+++.-. .| ++|+||||- .+|.-.+++...-+.++
T Consensus 132 -l~v~pyh~--------h~C~-~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~ 195 (234)
T PF06888_consen 132 -LRVRPYHS--------HGCS-LCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVF 195 (234)
T ss_pred -EEEeCccC--------CCCC-cCCCccchHHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEe
Confidence 23332111 1111 01111 12344444421 24 899999997 46777666544333343
No 90
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=88.82 E-value=1.3 Score=44.68 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=45.3
Q ss_pred hhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCC----hhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEE
Q 010014 217 TLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSL----WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 292 (520)
Q Consensus 217 ~lk~~v~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~----~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVI 292 (520)
.+.+...++...+..+-|....+|++|++.|.++|+|||.. -..++.++. .+|.+ -.++|++++
T Consensus 100 ~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk-~~gip-----------~~~~f~vil 167 (237)
T PRK11009 100 KFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLAD-DFHIP-----------ADNMNPVIF 167 (237)
T ss_pred HHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHH-HcCCC-----------cccceeEEE
Confidence 34444455555666666779999999999999999999953 345555555 33421 145888877
Q ss_pred ECC
Q 010014 293 TGS 295 (520)
Q Consensus 293 v~A 295 (520)
.+.
T Consensus 168 ~gd 170 (237)
T PRK11009 168 AGD 170 (237)
T ss_pred cCC
Confidence 654
No 91
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=88.08 E-value=1.4 Score=44.42 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=36.4
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCC----ChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEE
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNS----LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 293 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS----~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv 293 (520)
.+-+....+|.+++++|.++|++||. .=.+++.++..+ | ..++|++|+.
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-G-------------i~~~f~~i~~ 166 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-H-------------IPAMNPVIFA 166 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-C-------------CchheeEEEC
Confidence 33444889999999999999999998 445666766654 3 2468887754
No 92
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=87.70 E-value=2.5 Score=40.08 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=32.8
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
..-|.+..+|..|+++ .++.++||+.-.++..++..+
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~ 104 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL 104 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc
Confidence 3458899999999999 799999999999999988874
No 93
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=87.01 E-value=0.51 Score=45.07 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeeccCCC
Q 010014 238 PMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISP 317 (520)
Q Consensus 238 ~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~~~ 317 (520)
.-++.|++.|.++.++||.+...+..++..+ | +..+|+ +.+|
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l-g-------------l~~~f~-----g~~~------------------- 96 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL-G-------------ITHLYQ-----GQSN------------------- 96 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc-C-------------Cceeec-----CCCc-------------------
Confidence 4678888999999999999999999988875 2 122332 0000
Q ss_pred ccccccCCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCce
Q 010014 318 GLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 372 (520)
Q Consensus 318 ~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWr 372 (520)
+ ...+..+++.+|. ...+|+||||.+ .|+...+ ..|..
T Consensus 97 k--------------~~~l~~~~~~~gl-~~~ev~~VGDs~-~D~~~a~-~aG~~ 134 (183)
T PRK09484 97 K--------------LIAFSDLLEKLAI-APEQVAYIGDDL-IDWPVME-KVGLS 134 (183)
T ss_pred H--------------HHHHHHHHHHhCC-CHHHEEEECCCH-HHHHHHH-HCCCe
Confidence 0 1234556666776 578999999997 8976666 46876
No 94
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=86.31 E-value=0.52 Score=47.22 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=30.5
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 339 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 339 l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
+.+.++. +..++++|||++..||.-+++ .||+|++|-.
T Consensus 187 ~~~~~~~-~~~~~~~VGD~~~~Di~~a~~-~G~~~v~v~~ 224 (249)
T TIGR01457 187 AVEHLGT-EREETLMVGDNYLTDIRAGID-AGIDTLLVHT 224 (249)
T ss_pred HHHHcCC-CcccEEEECCCchhhHHHHHH-cCCcEEEEcC
Confidence 4455565 568999999999999987774 5999999954
No 95
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=86.08 E-value=1.6 Score=40.96 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=39.4
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 225 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 225 np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
+...|+.+-|.+..+|++|++. .++.+.||+.-.|++.+++.+
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l 94 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI 94 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh
Confidence 5677888899999999999855 899999999999999999998
No 96
>PTZ00445 p36-lilke protein; Provisional
Probab=85.17 E-value=1.2 Score=44.27 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhccchhHHHHHhCccccccc-CCChHHHHHHHHhcCCeEEEecCCChhh-----------hHHHHHhhcc
Q 010014 203 KDVRAAVDLCHRDGTLKQMVAKDPKTYINE-DRSIVPMLKMLRESGRSTFLVTNSLWDY-----------TTIVMNFLCG 270 (520)
Q Consensus 203 ~DV~~Avd~~H~~G~lk~~v~~np~kYi~k-d~~l~~~L~~Lr~~GKklFLiTNS~~~y-----------t~~vM~yl~g 270 (520)
-|.=.-+-.+|..|...+. +++..++.. .|++..|+++|+++|-+|.++|=|+=.- -..+.++++-
T Consensus 48 ~D~DnTlI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk 125 (219)
T PTZ00445 48 SDFDLTMITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALK 125 (219)
T ss_pred ecchhhhhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHH
Confidence 3444444557887766555 678888877 5889999999999999999999887532 1113333333
Q ss_pred CcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeeccCCCccccccCCCCCceecCCCHHHHHHHhcCcCCCc
Q 010014 271 SHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQ 350 (520)
Q Consensus 271 ~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G~~ 350 (520)
. + .--|++..|.|-=|.|+.+.. -..+++...|. ...+.|. ...+++-.|+ ...+
T Consensus 126 ~-----------s-~~~~~i~~~~~yyp~~w~~p~--~y~~~gl~KPd-------p~iK~yH---le~ll~~~gl-~peE 180 (219)
T PTZ00445 126 K-----------S-KCDFKIKKVYAYYPKFWQEPS--DYRPLGLDAPM-------PLDKSYH---LKQVCSDFNV-NPDE 180 (219)
T ss_pred h-----------c-CccceeeeeeeeCCcccCChh--hhhhhcccCCC-------ccchHHH---HHHHHHHcCC-CHHH
Confidence 1 1 445899999999999999732 12333322111 1112230 1334555565 5689
Q ss_pred EEEEcccccccccccccccCceEEEeeh
Q 010014 351 VLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 351 VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
+|+|=|.. -.|..++ ..||.|+.+..
T Consensus 181 ~LFIDD~~-~NVeaA~-~lGi~ai~f~~ 206 (219)
T PTZ00445 181 ILFIDDDM-NNCKNAL-KEGYIALHVTG 206 (219)
T ss_pred eEeecCCH-HHHHHHH-HCCCEEEEcCC
Confidence 99997773 4444444 57999999864
No 97
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=82.59 E-value=2 Score=37.32 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
-|.-+.+|+.||++||+++++||+.-.=....+..+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 377889999999999999999999855545555555
No 98
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=81.69 E-value=3 Score=39.21 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=46.3
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEE
Q 010014 225 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 293 (520)
Q Consensus 225 np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv 293 (520)
+..-|+.+-|.+..+|..|.+. -.+.+.|++.-.|++.+++.+ ..++.+|+.++.
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l-------------dp~~~~f~~~l~ 90 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL-------------DRGGKVISRRLY 90 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH-------------CcCCCEEeEEEE
Confidence 4567888999999999999987 899999999999999999987 234557766654
No 99
>PLN02645 phosphoglycolate phosphatase
Probab=81.27 E-value=1 Score=46.66 Aligned_cols=37 Identities=38% Similarity=0.538 Sum_probs=29.9
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCceEEEee
Q 010014 339 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 339 l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
..+.++. +..+++||||.+..||.-++. .||+|++|.
T Consensus 239 a~~~~~~-~~~~~~~VGD~~~~Di~~A~~-aG~~~ilV~ 275 (311)
T PLN02645 239 LANKFGI-EKSQICMVGDRLDTDILFGQN-GGCKTLLVL 275 (311)
T ss_pred HHHHcCC-CcccEEEEcCCcHHHHHHHHH-cCCCEEEEc
Confidence 3444565 578999999999999987775 599999994
No 100
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=81.22 E-value=0.86 Score=47.48 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.5
Q ss_pred CcEEEEcccccccccccccccCceEEEeeh
Q 010014 349 SQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 349 ~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
.++++|||.+.+||+-++. .||.|++|-.
T Consensus 264 ~~~~mIGD~~~tDI~ga~~-~G~~silV~t 292 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQN-YGWFSCLVKT 292 (321)
T ss_pred heEEEEcCChhhhhhhHHh-CCceEEEecc
Confidence 5899999999999997774 6999999963
No 101
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=79.22 E-value=3.8 Score=46.03 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=31.5
Q ss_pred HhCcccccccCCChHHHHHHHHhcCCeEEEecCCCh
Q 010014 223 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLW 258 (520)
Q Consensus 223 ~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~ 258 (520)
..+|+.+...-|.++..|++|++.|.+++++||..-
T Consensus 189 ~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 189 PKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 457777777789999999999999999999999766
No 102
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=78.58 E-value=1.5 Score=43.61 Aligned_cols=38 Identities=34% Similarity=0.515 Sum_probs=28.7
Q ss_pred HHHHHhcCcCCCcE-EEEcccccccccccccccCceEEEee
Q 010014 338 HLHKLLSIESSSQV-LYVGDHIYGDILRSKKVLGWRTMLVV 377 (520)
Q Consensus 338 ~l~~ll~~~~G~~V-LY~GDHI~~Dil~skk~~gWrT~~IV 377 (520)
.+.+.++. ...++ +||||.+..||.-++ ..||+|++|.
T Consensus 196 ~~~~~~~~-~~~~~~~~IGD~~~~Di~~A~-~~G~~~i~v~ 234 (236)
T TIGR01460 196 AALNLLQA-RPERRDVMVGDNLRTDILGAK-NAGFDTLLVL 234 (236)
T ss_pred HHHHHhCC-CCccceEEECCCcHHHHHHHH-HCCCcEEEEe
Confidence 34555565 34555 999999999998776 5699999984
No 103
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=77.63 E-value=3.9 Score=37.59 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=34.3
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
..|.+..+|+.++++|.++.++|+|.-.|+..++..+
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 4688999999999999999999999999999999876
No 104
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=77.51 E-value=3.5 Score=46.25 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=32.9
Q ss_pred CChHHHHHHHHhcC-CeEEEecCCChhhhHHHHHhh
Q 010014 234 RSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 234 ~~l~~~L~~Lr~~G-KklFLiTNS~~~yt~~vM~yl 268 (520)
|....+|++|++.| .++.++||.+-..+..+++.+
T Consensus 387 ~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l 422 (556)
T TIGR01525 387 PEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL 422 (556)
T ss_pred HhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 67889999999999 999999999999999999986
No 105
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=77.23 E-value=5 Score=41.67 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=54.6
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccC
Q 010014 225 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 303 (520)
Q Consensus 225 np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~ 303 (520)
+-+.=-.++|.+..-|.+||+.|..|.|=+-..-+++...|+-+ + =.++||+||+.+++-+-...
T Consensus 136 d~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~-~-------------L~~~Fd~ii~~G~~~~~~~~ 200 (297)
T PF05152_consen 136 DEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL-K-------------LEGYFDIIICGGNKAGEYNS 200 (297)
T ss_pred cCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh-C-------------CccccEEEEeCCccCCcCCc
Confidence 33443468899999999999999999999999999999999987 2 13899999999998876654
No 106
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=77.12 E-value=2.8 Score=41.22 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=26.3
Q ss_pred ccCCCCcEEEecccccccccCcchhHHHHH-HHHHHHHHHhcCCChh
Q 010014 52 LNMKNIVAVGFDMDYTLAQYKPETFESLAY-DGTVRKLVYDLGYPEE 97 (520)
Q Consensus 52 L~L~~i~~iGFDmDyTLa~Y~~~~~e~L~y-~~~~~~LV~~~gYP~~ 97 (520)
++...+++|-||||+||+-... ....+ +...+.+.+..|.|.+
T Consensus 5 ~~~~~~k~vIFDlDGTL~d~~~---~~~~~~~~~~~~~~~~~G~~~~ 48 (224)
T PRK14988 5 IAWQDVDTVLLDMDGTLLDLAF---DNYFWQKLVPETLGAQRGISPQ 48 (224)
T ss_pred CCcccCCEEEEcCCCCccchhh---hchHHHhhHHHHHHHHhCcCHH
Confidence 3445789999999999999421 11122 2234445456777744
No 107
>PRK10444 UMP phosphatase; Provisional
Probab=76.37 E-value=1.9 Score=43.38 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=30.5
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCceEEEeeh
Q 010014 339 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 339 l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
..+.++. ...+++||||.+..||.-++ ..|++|++|--
T Consensus 183 ~~~~~~~-~~~~~v~IGD~~~tDi~~A~-~~G~~~vlV~~ 220 (248)
T PRK10444 183 ALNKMQA-HSEETVIVGDNLRTDILAGF-QAGLETILVLS 220 (248)
T ss_pred HHHHcCC-CcccEEEECCCcHHHHHHHH-HcCCCEEEECC
Confidence 4455565 57899999999999988777 56999999943
No 108
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=76.12 E-value=3 Score=39.97 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=25.1
Q ss_pred CcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 57 IVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
++++-||+|+||+...+.-. -++..+.+.+. ..|+|
T Consensus 2 ~~~viFDlDGTL~ds~~~~~--~~~~~~~~~~~-~~g~~ 37 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAE--KARRNAIEVLI-EAGLN 37 (221)
T ss_pred ceEEEEeCCCCCcCCCCccC--HHHHHHHHHHH-HCCCc
Confidence 68999999999999875322 24555556665 35665
No 109
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=76.12 E-value=3.8 Score=45.85 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=32.7
Q ss_pred CChHHHHHHHHhcCC-eEEEecCCChhhhHHHHHhh
Q 010014 234 RSIVPMLKMLRESGR-STFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GK-klFLiTNS~~~yt~~vM~yl 268 (520)
|.....|++|++.|. ++.++||.+...+..+++.+
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l 400 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL 400 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc
Confidence 678889999999999 99999999999999999986
No 110
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=74.04 E-value=3.5 Score=41.83 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=23.6
Q ss_pred CCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 55 KNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 55 ~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
..|++|-|||||||+-=. + .++..+.+.+.+++|+|
T Consensus 22 ~~~k~vIFDlDGTLvDS~-~----~~~~~a~~~~~~~~G~~ 57 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDD-S----ELERKAWRALAEEEGKR 57 (260)
T ss_pred CCceEEEEeCCCceeCCc-h----HHHHHHHHHHHHHcCCC
Confidence 479999999999999621 1 23333333444568886
No 111
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=74.01 E-value=4.5 Score=37.89 Aligned_cols=38 Identities=24% Similarity=0.128 Sum_probs=22.6
Q ss_pred cEEEecccccccccCcchhHHHHHH-HHHHHHHHhcCCChh
Q 010014 58 VAVGFDMDYTLAQYKPETFESLAYD-GTVRKLVYDLGYPEE 97 (520)
Q Consensus 58 ~~iGFDmDyTLa~Y~~~~~e~L~y~-~~~~~LV~~~gYP~~ 97 (520)
++|-||||+||+--... +.. +++ .+.+.+...+|.|..
T Consensus 1 ~~viFDlDGTL~ds~~~-~~~-~~~~~~~~~~~~~~g~~~~ 39 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAG-IFL-QIDRNITEFVAARLKLSEE 39 (184)
T ss_pred CeEEEeCCCCCCCCccc-HHH-HHHHHHHHHHHHHcCcCHH
Confidence 47899999999954322 222 333 333445556788643
No 112
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=73.66 E-value=3.5 Score=40.76 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCCcEEEecccccccccCcchhHHHHHHHHHHHH
Q 010014 54 MKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKL 88 (520)
Q Consensus 54 L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~L 88 (520)
|.+|++|-||||+||+--.+ . -.-+++.+.+.+
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~-~-~~~a~~~~~~~~ 39 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRP-V-ILRTEQEALAFV 39 (238)
T ss_pred CCCceeEEEcCcccccCChH-H-HHHHHHHHHHHH
Confidence 45799999999999998764 2 223444545444
No 113
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=73.55 E-value=7 Score=38.30 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=32.6
Q ss_pred cCCChHHHHH-HHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 232 EDRSIVPMLK-MLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 232 kd~~l~~~L~-~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
.-|.....|+ .+++.|.++.++|||+-.|+..+....
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 4688899995 788899999999999999999999774
No 114
>PRK11587 putative phosphatase; Provisional
Probab=72.86 E-value=3.4 Score=39.99 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=23.3
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCCh
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPE 96 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~ 96 (520)
.|++|-||||+||+--.. ...+... .+.+++|+|.
T Consensus 2 ~~k~viFDlDGTL~Ds~~-----~~~~a~~-~~~~~~g~~~ 36 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLP-----AVERAWS-NWADRHGIAP 36 (218)
T ss_pred CCCEEEEcCCCCcCcCHH-----HHHHHHH-HHHHHcCCCH
Confidence 478999999999997542 2333333 3334688874
No 115
>PRK08238 hypothetical protein; Validated
Probab=72.77 E-value=6.1 Score=43.84 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
.|....+|+++++.|.++.|+|||+-.+++.+++++
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l 109 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL 109 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc
Confidence 367889999999999999999999999999999985
No 116
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=72.16 E-value=3.9 Score=41.14 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=28.8
Q ss_pred ccCCCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCChh
Q 010014 52 LNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEE 97 (520)
Q Consensus 52 L~L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~~ 97 (520)
|+|++++.|-+|||+||..=+. .......+. +++|. +.|.+--
T Consensus 2 ~~~~~~~lI~~DlDGTLL~~~~-~i~~~~~~a-i~~l~-~~Gi~~v 44 (271)
T PRK03669 2 LSLQDPLLIFTDLDGTLLDSHT-YDWQPAAPW-LTRLR-EAQVPVI 44 (271)
T ss_pred CCcCCCeEEEEeCccCCcCCCC-cCcHHHHHH-HHHHH-HcCCeEE
Confidence 6889999999999999996432 221223333 56676 4677643
No 117
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=68.61 E-value=4.5 Score=42.25 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHhcC-CeEEEecCCCh
Q 010014 233 DRSIVPMLKMLRESG-RSTFLVTNSLW 258 (520)
Q Consensus 233 d~~l~~~L~~Lr~~G-KklFLiTNS~~ 258 (520)
+|.|..+++.+|+.| +++||||||.-
T Consensus 94 y~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 94 YPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred ccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 478999999999999 79999999988
No 118
>PLN02645 phosphoglycolate phosphatase
Probab=67.61 E-value=7.4 Score=40.32 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=34.6
Q ss_pred ccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 214 RDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 214 ~~G~lk~~v~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
.||+|+.. .. .-|..+..|++||++|++++++||....-...+.+.+
T Consensus 35 ~DGtl~~~------~~--~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 35 CDGVIWKG------DK--LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CcCCeEeC------Cc--cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 46888753 11 2367799999999999999999998865555555544
No 119
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=66.09 E-value=5.6 Score=39.61 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 54 MKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 54 L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
++.|++|-||||+||+--.. .+++...+-+ +++|++
T Consensus 19 ~~~~k~viFDlDGTLiDs~~-----~~~~a~~~~~-~~~g~~ 54 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDP-----LHYYAFREML-QEINFN 54 (248)
T ss_pred cCccCEEEEcCCCccCcCHH-----HHHHHHHHHH-HHhccc
Confidence 35688999999999997542 3333333333 456654
No 120
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=65.97 E-value=11 Score=34.42 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=51.4
Q ss_pred ccchhHHHHHhCccccc--ccCCChHHHHHHHHhcCCeEEEecCCChhhhH------------HHHHhhccCcCCCCCCC
Q 010014 214 RDGTLKQMVAKDPKTYI--NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTT------------IVMNFLCGSHTLDGGIT 279 (520)
Q Consensus 214 ~~G~lk~~v~~np~kYi--~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~------------~vM~yl~g~~~~~~~~~ 279 (520)
.||++- ..+.+.|. ...+.....|++|++.|-+++++|.-+..... .+..+|
T Consensus 8 iDGTL~---~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL----------- 73 (126)
T TIGR01689 8 LDNTIT---LTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL----------- 73 (126)
T ss_pred CCCCcc---cCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-----------
Confidence 467772 23444564 34577788899999999999999999998876 777777
Q ss_pred CCCCCccCccEEEECCCCC---CCccC
Q 010014 280 CNSDWLLYFDVVITGSAKP---GFFHE 303 (520)
Q Consensus 280 ~~~dWr~~FDvVIv~A~KP---~FF~~ 303 (520)
..|.=-||=|++..--| +|+.+
T Consensus 74 --~k~~ipYd~l~~~kp~~~~~~~~~d 98 (126)
T TIGR01689 74 --NQHNVPYDEIYVGKPWCGHDGFYVD 98 (126)
T ss_pred --HHcCCCCceEEeCCCcCCCCCceec
Confidence 34555578787754332 35554
No 121
>PLN02954 phosphoserine phosphatase
Probab=65.52 E-value=5.7 Score=38.31 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.3
Q ss_pred CcEEEEcccccccccccccccCceEEE
Q 010014 349 SQVLYVGDHIYGDILRSKKVLGWRTML 375 (520)
Q Consensus 349 ~~VLY~GDHI~~Dil~skk~~gWrT~~ 375 (520)
.+++||||++. |+.. .+..|...++
T Consensus 170 ~~~i~iGDs~~-Di~a-a~~~~~~~~~ 194 (224)
T PLN02954 170 KTMVMIGDGAT-DLEA-RKPGGADLFI 194 (224)
T ss_pred CceEEEeCCHH-HHHh-hhcCCCCEEE
Confidence 68999999988 8777 5555555444
No 122
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=64.63 E-value=5.6 Score=37.71 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=14.6
Q ss_pred HhcCcCCCcEEEEccccccccc
Q 010014 342 LLSIESSSQVLYVGDHIYGDIL 363 (520)
Q Consensus 342 ll~~~~G~~VLY~GDHI~~Dil 363 (520)
.++. .+.+++||||.. .|+.
T Consensus 139 ~~~~-~~~~~v~iGDs~-~D~~ 158 (205)
T PRK13582 139 ALKS-LGYRVIAAGDSY-NDTT 158 (205)
T ss_pred HHHH-hCCeEEEEeCCH-HHHH
Confidence 3443 468999999996 7763
No 123
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=64.61 E-value=6.2 Score=39.24 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=26.5
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCChhh
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEEL 98 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~~l 98 (520)
.++.+-||||+||+..+.. ...- -..++++|. +.|.+--+
T Consensus 2 ~~kli~~DlDGTLl~~~~~-i~~~-~~~al~~~~-~~g~~v~i 41 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-ISPE-TKEALARLR-EKGVKVVL 41 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-cCHH-HHHHHHHHH-HCCCEEEE
Confidence 5789999999999999975 2322 233344554 46766443
No 124
>PRK09449 dUMP phosphatase; Provisional
Probab=64.15 E-value=6.3 Score=38.01 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.7
Q ss_pred CCcEEEecccccccccC
Q 010014 56 NIVAVGFDMDYTLAQYK 72 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~ 72 (520)
.|++|-||||+||+.+.
T Consensus 2 ~~k~iiFDlDGTLid~~ 18 (224)
T PRK09449 2 KYDWILFDADETLFHFD 18 (224)
T ss_pred CccEEEEcCCCchhcch
Confidence 48899999999999753
No 125
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=63.70 E-value=6.5 Score=36.99 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=28.7
Q ss_pred HhCcccccccCCChHHHHHHHHhcCCeEEEecCC
Q 010014 223 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNS 256 (520)
Q Consensus 223 ~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS 256 (520)
.++|+.++.-.|.++..|++|.+.|.+++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3578888888889999999999999999999995
No 126
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=63.56 E-value=29 Score=35.25 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=40.0
Q ss_pred hCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhcc
Q 010014 224 KDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 270 (520)
Q Consensus 224 ~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g 270 (520)
....++..-+++++.+++.|.+.|..|+-+|..+-.+.+..+++|-.
T Consensus 74 ~~~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~ 120 (252)
T PF11019_consen 74 FELRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKS 120 (252)
T ss_pred HhhcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHH
Confidence 33445555578999999999999999999999999999999999943
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.64 E-value=49 Score=36.79 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=48.3
Q ss_pred ehhcHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCChHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010014 377 VPELEREVELL-WELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRE 455 (520)
Q Consensus 377 VpELe~Ei~i~-~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~ 455 (520)
+.|++.|++.+ .+.+.+.++-.+|+..+..|..+++.- + +.+++++..+.++|+.++++++..+.++++.
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a---v------~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA---V------QSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---H------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777644 345566677777777666666655421 0 1233445567778888888888888888777
Q ss_pred Hhhhcc
Q 010014 456 CHQKFH 461 (520)
Q Consensus 456 ~~~~fn 461 (520)
+....+
T Consensus 139 l~~~~~ 144 (472)
T TIGR03752 139 LAGVLT 144 (472)
T ss_pred Hhhccc
Confidence 654443
No 128
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=61.73 E-value=8.4 Score=39.47 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=24.7
Q ss_pred CCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 55 KNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 55 ~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
+.+++|-||||+||+-... .+.++...+.+ +++|+|
T Consensus 38 ~~~k~VIFDlDGTLvDS~~----~~~~~a~~~~l-~~~G~~ 73 (286)
T PLN02779 38 ALPEALLFDCDGVLVETER----DGHRVAFNDAF-KEFGLR 73 (286)
T ss_pred cCCcEEEEeCceeEEcccc----HHHHHHHHHHH-HHcCCC
Confidence 4579999999999998641 33444444444 468885
No 129
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=61.69 E-value=7.8 Score=37.34 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=25.2
Q ss_pred CcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCChh
Q 010014 57 IVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEE 97 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~~ 97 (520)
|++|-||||+||..-. ..+..-..+. +++|. +.|++--
T Consensus 1 ik~v~~DlDGTLl~~~-~~i~~~~~~~-i~~l~-~~g~~~~ 38 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPN-RMISERAIEA-IRKAE-KKGIPVS 38 (215)
T ss_pred CcEEEEecCCCcCCCC-cccCHHHHHH-HHHHH-HCCCEEE
Confidence 5789999999999543 3344445444 56675 4777644
No 130
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=59.64 E-value=9.8 Score=35.20 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.7
Q ss_pred CcEEEecccccccccCc
Q 010014 57 IVAVGFDMDYTLAQYKP 73 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~~ 73 (520)
|++|=||+|+||+--..
T Consensus 1 ~~~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAP 17 (185)
T ss_pred CCeEEEcCCCcccCChH
Confidence 57899999999998863
No 131
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=59.00 E-value=8.8 Score=36.38 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=20.6
Q ss_pred cEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 58 VAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 58 ~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
+++-||||+||+.-... ...++..+. +++|.|
T Consensus 1 k~viFDlDGTL~d~~~~--~~~a~~~~~----~~~g~~ 32 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP--VGEVYCEIA----RKYGVE 32 (203)
T ss_pred CeEEEecCCceeeeCCC--HHHHHHHHH----HHhCCC
Confidence 47899999999986542 222444333 456776
No 132
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=57.71 E-value=9 Score=39.16 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=26.4
Q ss_pred CceEEeCcccCCCCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 44 KQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 44 ~~VF~Nr~L~L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
+.||--+.=+ .++++-||||+||+-=. + .+... .+...+++|++
T Consensus 51 ~~~~~~~~~~--~~k~vIFDlDGTLiDS~-~----~~~~a-~~~~~~~~G~~ 94 (273)
T PRK13225 51 PQVFPQSYPQ--TLQAIIFDFDGTLVDSL-P----TVVAI-ANAHAPDFGYD 94 (273)
T ss_pred hhhhhhhhhh--hcCEEEECCcCccccCH-H----HHHHH-HHHHHHHCCCC
Confidence 3455433333 48899999999999743 2 22333 33344567875
No 133
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=56.92 E-value=14 Score=37.25 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
-|....+|++||++|++++++||.+..=...+..++
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 568889999999999999999997776444444444
No 134
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=56.76 E-value=8.6 Score=35.15 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=13.1
Q ss_pred cEEEecccccccccC
Q 010014 58 VAVGFDMDYTLAQYK 72 (520)
Q Consensus 58 ~~iGFDmDyTLa~Y~ 72 (520)
++|.||+|+||+.-+
T Consensus 2 K~i~~DiDGTL~~~~ 16 (126)
T TIGR01689 2 KRLVMDLDNTITLTE 16 (126)
T ss_pred CEEEEeCCCCcccCC
Confidence 689999999998764
No 135
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=56.35 E-value=6 Score=37.23 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=12.6
Q ss_pred cEEEecccccccccCcc
Q 010014 58 VAVGFDMDYTLAQYKPE 74 (520)
Q Consensus 58 ~~iGFDmDyTLa~Y~~~ 74 (520)
++.+||+|+||+.-++.
T Consensus 1 Kia~fD~DgTLi~~~s~ 17 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG 17 (159)
T ss_dssp SEEEE-SCTTTEE-STS
T ss_pred CEEEEeCCCCccCCCCC
Confidence 47899999999998763
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.91 E-value=73 Score=31.61 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=11.1
Q ss_pred EeehhcHHHHHHHH
Q 010014 375 LVVPELEREVELLW 388 (520)
Q Consensus 375 ~IVpELe~Ei~i~~ 388 (520)
..+|+|+.|++.+.
T Consensus 93 ~rlp~le~el~~l~ 106 (206)
T PRK10884 93 TRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 45799999998775
No 137
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=55.54 E-value=7.3 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=15.8
Q ss_pred CcEEEecccccccccCcc
Q 010014 57 IVAVGFDMDYTLAQYKPE 74 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~~~ 74 (520)
|++|=||||+||+...+.
T Consensus 1 ~k~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA 18 (224)
T ss_pred CCEEEEcCcCcccccchH
Confidence 678999999999998863
No 138
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=55.16 E-value=12 Score=36.77 Aligned_cols=34 Identities=29% Similarity=0.144 Sum_probs=23.1
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
-+++|-||||+||+--.. +..+...+.+ .++|+|
T Consensus 11 ~~k~viFD~DGTL~Ds~~-----~~~~a~~~~~-~~~g~~ 44 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAP-----DMLATVNAML-AARGRA 44 (229)
T ss_pred cCCEEEEcCcCccccCHH-----HHHHHHHHHH-HHCCCC
Confidence 357899999999997542 3444444444 568887
No 139
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=53.08 E-value=7.3 Score=37.38 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=21.9
Q ss_pred HHHhcCcCCCcEEEEcccccccccccccccCceE
Q 010014 340 HKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT 373 (520)
Q Consensus 340 ~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT 373 (520)
++.++. ...+++||||+ .+|+...+ ..|+..
T Consensus 161 ~~~~~~-~~~~~i~iGDs-~~Di~aa~-~ag~~i 191 (219)
T TIGR00338 161 LRKEGI-SPENTVAVGDG-ANDLSMIK-AAGLGI 191 (219)
T ss_pred HHHcCC-CHHHEEEEECC-HHHHHHHH-hCCCeE
Confidence 344454 45799999999 59986655 458864
No 140
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=52.83 E-value=17 Score=33.97 Aligned_cols=37 Identities=8% Similarity=0.201 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhc
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 269 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~ 269 (520)
.|....++++++++|.+++++|.++|.-.+....|+-
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4778899999999999999999999999887777773
No 141
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=52.31 E-value=20 Score=35.89 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=25.1
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
|.-..+|++|++.|++++++||..-.-...+...+
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 56789999999999999999983322223344444
No 142
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=51.85 E-value=15 Score=36.31 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
.|+.|.||||+||..-+..--..-. .++++|.+ .|..
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~--~ai~~~~~-~G~~ 38 (272)
T PRK10530 2 TYRVIALDLDGTLLTPKKTILPESL--EALARARE-AGYK 38 (272)
T ss_pred CccEEEEeCCCceECCCCccCHHHH--HHHHHHHH-CCCE
No 143
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.24 E-value=1.2e+02 Score=30.72 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHH
Q 010014 432 CTRMDDLEYQRDKARLSHQEAQRE 455 (520)
Q Consensus 432 ~~~l~~l~~~~~~lr~~~~~~~~~ 455 (520)
...+..+..+...++..+.++.++
T Consensus 80 ~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 80 QEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444
No 144
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=50.63 E-value=14 Score=37.44 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=21.8
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
=|++|-||||+||+.-.. .+. .+.+.+..+.|.|
T Consensus 12 ~~k~viFDlDGTL~Ds~~-----~~~-~a~~~~~~~~g~~ 45 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVP-----DLA-AAVDRMLLELGRP 45 (272)
T ss_pred cCCEEEEcCCCccccCHH-----HHH-HHHHHHHHHcCCC
Confidence 366999999999987432 222 3333344567765
No 145
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=50.15 E-value=17 Score=33.57 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=32.0
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
|+...+|+.++++|.+++++|.|+-.++..++..+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~ 126 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL 126 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 77779999999999999999999999999998843
No 146
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=50.15 E-value=8.8 Score=33.93 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=11.3
Q ss_pred cEEEecccccccc
Q 010014 58 VAVGFDMDYTLAQ 70 (520)
Q Consensus 58 ~~iGFDmDyTLa~ 70 (520)
+++-||||+||..
T Consensus 1 k~~~~D~dgtL~~ 13 (132)
T TIGR01662 1 KGVVLDLDGTLTD 13 (132)
T ss_pred CEEEEeCCCceec
Confidence 4788999999994
No 147
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=49.95 E-value=14 Score=34.07 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 59 AVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 59 ~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
+|=||+|+||+.... ..+.... .+.+++|+|
T Consensus 1 ~iiFD~DGTL~ds~~-----~~~~~~~-~~~~~~g~~ 31 (185)
T TIGR01990 1 AVIFDLDGVITDTAE-----YHYLAWK-ALADELGIP 31 (185)
T ss_pred CeEEcCCCccccChH-----HHHHHHH-HHHHHcCCC
Confidence 367999999997653 2333333 344567765
No 148
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=49.89 E-value=24 Score=34.41 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=33.4
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
...|....+|+.+|+.| ++.++||+.-.++..++..+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l 104 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL 104 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc
Confidence 34789999999999987 99999999999999999875
No 149
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=49.67 E-value=1.2e+02 Score=31.35 Aligned_cols=39 Identities=8% Similarity=0.116 Sum_probs=35.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
+...|....+|+.|+++|-++.++|++.-+++..++.-+
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l 158 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA 158 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc
Confidence 455899999999999999999999999999999998874
No 150
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.27 E-value=1.4e+02 Score=27.12 Aligned_cols=46 Identities=26% Similarity=0.334 Sum_probs=27.9
Q ss_pred CceEEEeehhcHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 010014 370 GWRTMLVVPELEREVELLWELR-DLRKKLHLLRNERDLIEDQIHHLK 415 (520)
Q Consensus 370 gWrT~~IVpELe~Ei~i~~~~~-~~~~~l~~L~~~~~~le~~~~~l~ 415 (520)
+=-++.+|+-|..+|+-..... .++.++..|...|+.+.+.+-.+.
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666555443322 455678888888888877765544
No 151
>PRK10444 UMP phosphatase; Provisional
Probab=48.20 E-value=23 Score=35.68 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=30.8
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
-|....+|++|++.|++++++||....=.....+.+
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 578889999999999999999999987666666665
No 152
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=47.77 E-value=17 Score=34.77 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=19.3
Q ss_pred CCCCcEEEecccccccccCcchh
Q 010014 54 MKNIVAVGFDMDYTLAQYKPETF 76 (520)
Q Consensus 54 L~~i~~iGFDmDyTLa~Y~~~~~ 76 (520)
|..|++|.||+|+||....+...
T Consensus 1 ~~~~k~i~FD~d~TL~d~~~~~~ 23 (229)
T COG1011 1 MMMIKAILFDLDGTLLDFDSAEF 23 (229)
T ss_pred CCceeEEEEecCCcccccchHHh
Confidence 46789999999999999887543
No 153
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=47.15 E-value=1.3e+02 Score=29.17 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=23.7
Q ss_pred CCCChHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHh
Q 010014 421 EGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECH 457 (520)
Q Consensus 421 ~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~ 457 (520)
.+.+++++ .+.++|+..|+.+|...+++...+.
T Consensus 137 ~hMSeeER----~EaeQLQsLR~avRqElqELE~QL~ 169 (179)
T PF14723_consen 137 RHMSEEER----EEAEQLQSLRSAVRQELQELEFQLE 169 (179)
T ss_pred hcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665 3567788888999998888775554
No 154
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=46.24 E-value=18 Score=34.36 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=18.1
Q ss_pred EEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 60 VGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 60 iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
+-||||+||+-- +...++ +.+...++.|.|
T Consensus 1 viFD~DGTL~Ds-----~~~~~~-~~~~~~~~~~~~ 30 (213)
T TIGR01449 1 VLFDLDGTLVDS-----APDIAA-AVNMALAALGLP 30 (213)
T ss_pred CeecCCCccccC-----HHHHHH-HHHHHHHHCCCC
Confidence 359999999952 223334 334444567775
No 155
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=44.98 E-value=25 Score=38.03 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=22.5
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCCh
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPE 96 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~ 96 (520)
.+++|-|||||||+-=.. .++..+...+.++.|+|.
T Consensus 130 ~~~~VIFDlDGTLIDS~~-----~i~~~a~~~l~~e~G~~~ 165 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNP-----DLENQAWLTLAQEEGKSP 165 (381)
T ss_pred CCCEEEEcCcCcceeCHH-----HHHHHHHHHHHHHcCCCC
Confidence 568899999999996221 123223333445678863
No 156
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=44.79 E-value=21 Score=35.41 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
.|+.|.||||+||..-+..--+.-. .++++|.+ .|+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~--~ai~~l~~-~G~~ 38 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPDHTISPAVK--QAIAAARA-KGVN 38 (270)
T ss_pred ceEEEEEecCCcCcCCCCccCHHHH--HHHHHHHH-CCCE
No 157
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=44.53 E-value=20 Score=34.06 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=11.9
Q ss_pred cEEEecccccccccC
Q 010014 58 VAVGFDMDYTLAQYK 72 (520)
Q Consensus 58 ~~iGFDmDyTLa~Y~ 72 (520)
++|=||||+||+-=.
T Consensus 1 ~~viFD~DGTLiDs~ 15 (197)
T TIGR01548 1 QALVLDMDGVMADVS 15 (197)
T ss_pred CceEEecCceEEech
Confidence 467899999998543
No 158
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=43.84 E-value=28 Score=35.04 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=30.1
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhcc
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 270 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g 270 (520)
|....+++.+++.|-++|++||-+-..-+.++..|..
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~ 159 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLIN 159 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHH
Confidence 4445678889999999999999998887778777743
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.61 E-value=1.8e+02 Score=29.37 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHH
Q 010014 431 MCTRMDDLEYQRDKARLSHQEAQ 453 (520)
Q Consensus 431 ~~~~l~~l~~~~~~lr~~~~~~~ 453 (520)
++..+.+.+.++.+.+..+..+.
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544433
No 160
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=42.99 E-value=12 Score=35.24 Aligned_cols=17 Identities=35% Similarity=0.290 Sum_probs=14.7
Q ss_pred CcEEEecccccccccCc
Q 010014 57 IVAVGFDMDYTLAQYKP 73 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~~ 73 (520)
|++|-||||+||+-+.+
T Consensus 1 ik~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHS 17 (198)
T ss_pred CcEEEEeCCCcCccHHH
Confidence 57899999999998764
No 161
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=42.41 E-value=12 Score=36.07 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=0.0
Q ss_pred CcEEEeccccccc
Q 010014 57 IVAVGFDMDYTLA 69 (520)
Q Consensus 57 i~~iGFDmDyTLa 69 (520)
|++|-||||+||+
T Consensus 3 ~kli~~DlDGTLl 15 (230)
T PRK01158 3 IKAIAIDIDGTIT 15 (230)
T ss_pred eeEEEEecCCCcC
No 162
>PTZ00174 phosphomannomutase; Provisional
Probab=42.37 E-value=13 Score=36.94 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
+++.|.||||+||..-+.. +..-. ..++++|.+ .|..
T Consensus 4 ~~klia~DlDGTLL~~~~~-is~~~-~~ai~~l~~-~Gi~ 40 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP-ITQEM-KDTLAKLKS-KGFK 40 (247)
T ss_pred CCeEEEEECcCCCcCCCCC-CCHHH-HHHHHHHHH-CCCE
Confidence 4899999999999976643 33333 344566764 5553
No 163
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=41.32 E-value=28 Score=34.99 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=0.0
Q ss_pred CcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 57 IVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
|++|-+|||+||..-.....+. -..++++|.+ .|++
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~--~~~ai~~l~~-~Gi~ 39 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEP--AKPALKALKE-KGIP 39 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHH--HHHHHHHHHH-CCCE
No 164
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=41.03 E-value=13 Score=35.36 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=20.6
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChh
Q 010014 231 NEDRSIVPMLKMLRESGRSTFLVTNSLWD 259 (520)
Q Consensus 231 ~kd~~l~~~L~~Lr~~GKklFLiTNS~~~ 259 (520)
.+-|.....|++|++.|-.+++||.++..
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 34567778899999988777777777766
No 165
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=40.77 E-value=24 Score=35.05 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHhcCcCCCcEEEEcccccccccccccc
Q 010014 337 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKV 368 (520)
Q Consensus 337 ~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~ 368 (520)
..+.+.++. .+..++||||.. .|+---+..
T Consensus 173 ~~~~~~~~~-~~~~~i~iGD~~-~D~~~~~~~ 202 (244)
T TIGR00685 173 KRLLWHQPG-SGISPVYLGDDI-TDEDAFRVV 202 (244)
T ss_pred HHHHHhccc-CCCceEEEcCCC-cHHHHHHHH
Confidence 445566665 568999999954 466555443
No 166
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=40.77 E-value=16 Score=38.36 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=30.5
Q ss_pred cccCCCCcEEEecccccccccCcch-h-HHHHHHHHHHHHHHhcCCChhhcC
Q 010014 51 SLNMKNIVAVGFDMDYTLAQYKPET-F-ESLAYDGTVRKLVYDLGYPEELLE 100 (520)
Q Consensus 51 ~L~L~~i~~iGFDmDyTLa~Y~~~~-~-e~L~y~~~~~~LV~~~gYP~~ll~ 100 (520)
++-.+-.++|.||||+||..=..+. . ..-+.+ +++.|- +.|++-.|..
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~E-aL~~Lk-ekGikLaIaT 169 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEEPVRIRDPRIYD-SLTELK-KRGCILVLWS 169 (301)
T ss_pred ccccccceEEEEecCCCCcCCCCccccCCHHHHH-HHHHHH-HCCCEEEEEE
Confidence 4455566899999999998775320 1 122344 456675 5788866653
No 167
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=39.91 E-value=45 Score=32.84 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=35.4
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 230 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 230 i~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
+.--|....++..+|+.|-++++||.|.-.+++.++..+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 444678899999999999999999999999999999986
No 168
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=39.75 E-value=15 Score=34.41 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.9
Q ss_pred CcEEEecccccccccCc
Q 010014 57 IVAVGFDMDYTLAQYKP 73 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~~ 73 (520)
|+.+-||+|+||+.-.+
T Consensus 4 ~k~viFD~DGTLid~~~ 20 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMS 20 (201)
T ss_pred ceEEEEeCCCCCcCCcc
Confidence 77899999999998663
No 169
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=39.70 E-value=15 Score=35.03 Aligned_cols=16 Identities=38% Similarity=0.274 Sum_probs=14.2
Q ss_pred CcEEEecccccccccC
Q 010014 57 IVAVGFDMDYTLAQYK 72 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~ 72 (520)
|++|-||||+||+.+.
T Consensus 2 ik~viFDldGtL~d~~ 17 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSP 17 (211)
T ss_pred ceEEEEecCCceecCH
Confidence 6789999999999974
No 170
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.22 E-value=2.7e+02 Score=24.47 Aligned_cols=82 Identities=17% Similarity=0.351 Sum_probs=45.1
Q ss_pred ehhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc----c-CC-------------CC-h-------HHHHH
Q 010014 377 VPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLK----S-EG-------------ID-V-------DEQRK 430 (520)
Q Consensus 377 VpELe~Ei~i~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~----~-~~-------------~~-~-------~~~~~ 430 (520)
-|+++.++.-... ++++++.+...+..|+..++.....+. . ++ .+ + .....
T Consensus 2 ~~~~q~~~~~~q~---~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ 78 (110)
T TIGR02338 2 PPQVQNQLAQLQQ---LQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKET 78 (110)
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHH
Confidence 3667666655544 455666666666666555544333221 0 00 00 1 11233
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 010014 431 MCTRMDDLEYQRDKARLSHQEAQRECHQKFH 461 (520)
Q Consensus 431 ~~~~l~~l~~~~~~lr~~~~~~~~~~~~~fn 461 (520)
++..+..+.+....++..+.+++..+.++++
T Consensus 79 ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 79 LELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777777777787777777666554
No 171
>PLN02423 phosphomannomutase
Probab=39.01 E-value=31 Score=34.46 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=20.7
Q ss_pred CCCcEEE-ecccccccccCcchhHHHHHHHHHHHHHH
Q 010014 55 KNIVAVG-FDMDYTLAQYKPETFESLAYDGTVRKLVY 90 (520)
Q Consensus 55 ~~i~~iG-FDmDyTLa~Y~~~~~e~L~y~~~~~~LV~ 90 (520)
++.+++. ||||+||+.-+- .+..-. ..++++|.+
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~-~i~~~~-~~ai~~l~~ 38 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRK-EATPEM-LEFMKELRK 38 (245)
T ss_pred CccceEEEEeccCCCcCCCC-cCCHHH-HHHHHHHHh
Confidence 4566555 999999996553 233333 344555653
No 172
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=38.78 E-value=2.7e+02 Score=27.70 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=49.8
Q ss_pred HHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhcc
Q 010014 210 DLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 270 (520)
Q Consensus 210 d~~H~~G~lk~~v~~np~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g 270 (520)
+.+|. .+ +++.+...+=|.=||..+++.+-.++++-.+.+++..-=.|+..+.+-++|
T Consensus 55 ~~i~~--s~-~Eile~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 55 GSIHS--SL-EEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HhcCC--CH-HHHHHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 44554 34 888888888888899999999999999988888888888899999999988
No 173
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=37.84 E-value=28 Score=36.51 Aligned_cols=57 Identities=28% Similarity=0.412 Sum_probs=38.7
Q ss_pred eecCCCHHHHHHHhcCc---CCCcEEEEcccccccccccccccCceEEEeehhcHHHHHHH
Q 010014 330 IFQGGSVGHLHKLLSIE---SSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELL 387 (520)
Q Consensus 330 vY~gGn~~~l~~ll~~~---~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpELe~Ei~i~ 387 (520)
++.|=-...+.+++... ..++.|.|||-+=+||+=.+ .+|..|.+|.-=...|-.+.
T Consensus 220 ~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~-~~G~~TLLvltGv~~led~~ 279 (306)
T KOG2882|consen 220 IVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGK-NCGFKTLLVLSGVTTLEDIL 279 (306)
T ss_pred eecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhh-ccCcceEEEecCcCcHHHHH
Confidence 44444444444444321 34899999999999999887 56999999976655544433
No 174
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=37.09 E-value=45 Score=34.26 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
-|....+|+.|++.|.++|++||.+-...+.++..+
T Consensus 120 ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L 155 (266)
T TIGR01533 120 VAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL 155 (266)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH
Confidence 477889999999999999999999876666665555
No 175
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=36.70 E-value=17 Score=36.65 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=12.2
Q ss_pred EEEecccccccccC
Q 010014 59 AVGFDMDYTLAQYK 72 (520)
Q Consensus 59 ~iGFDmDyTLa~Y~ 72 (520)
+|+||+|+||+-=.
T Consensus 65 aViFDlDgTLlDSs 78 (237)
T TIGR01672 65 AVSFDIDDTVLFSS 78 (237)
T ss_pred EEEEeCCCccccCc
Confidence 89999999998654
No 176
>PRK10976 putative hydrolase; Provisional
Probab=36.39 E-value=18 Score=35.98 Aligned_cols=13 Identities=38% Similarity=0.322 Sum_probs=0.0
Q ss_pred CcEEEeccccccc
Q 010014 57 IVAVGFDMDYTLA 69 (520)
Q Consensus 57 i~~iGFDmDyTLa 69 (520)
|+.|.+|||+||.
T Consensus 2 ikli~~DlDGTLl 14 (266)
T PRK10976 2 YQVVASDLDGTLL 14 (266)
T ss_pred ceEEEEeCCCCCc
No 177
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=36.38 E-value=17 Score=34.00 Aligned_cols=17 Identities=47% Similarity=0.344 Sum_probs=14.5
Q ss_pred CcEEEecccccccccCc
Q 010014 57 IVAVGFDMDYTLAQYKP 73 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~~ 73 (520)
|++|-||+|+||..-+.
T Consensus 1 i~~i~fDktGTLt~~~~ 17 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKM 17 (215)
T ss_dssp ESEEEEECCTTTBESHH
T ss_pred CeEEEEecCCCcccCeE
Confidence 68999999999977664
No 178
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=36.18 E-value=62 Score=28.42 Aligned_cols=20 Identities=35% Similarity=0.668 Sum_probs=18.3
Q ss_pred EEEecCCChhhhHHHHHhhc
Q 010014 250 TFLVTNSLWDYTTIVMNFLC 269 (520)
Q Consensus 250 lFLiTNS~~~yt~~vM~yl~ 269 (520)
+|-+|||+|.....+.+|+-
T Consensus 2 f~YvS~SPwnly~~l~~Fl~ 21 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLR 21 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHH
Confidence 68899999999999999984
No 179
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=35.77 E-value=32 Score=33.91 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 59 AVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 59 ~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
+|-||||+||.. ....... -..++++|.+ .|.|
T Consensus 1 li~~DlDGTLl~-~~~~~~~--~~~ai~~l~~-~G~~ 33 (225)
T TIGR02461 1 VIFTDLDGTLLP-PGYEPGP--AREALEELKD-LGFP 33 (225)
T ss_pred CEEEeCCCCCcC-CCCCchH--HHHHHHHHHH-CCCE
No 180
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=35.60 E-value=40 Score=30.81 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=34.6
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhc
Q 010014 227 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 269 (520)
Q Consensus 227 ~kYi~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~ 269 (520)
..+|.+-|.+..+|+.+.+. ..+++.|.+.-.|++.++..+.
T Consensus 32 ~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld 73 (159)
T PF03031_consen 32 GYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD 73 (159)
T ss_dssp EEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT
T ss_pred ceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh
Confidence 56777889999999999655 7999999999999999999984
No 181
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=34.61 E-value=13 Score=34.03 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.5
Q ss_pred EEEecccccccccCcc
Q 010014 59 AVGFDMDYTLAQYKPE 74 (520)
Q Consensus 59 ~iGFDmDyTLa~Y~~~ 74 (520)
++-||||+||+...+.
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4679999999999764
No 182
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=34.51 E-value=13 Score=34.52 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=28.5
Q ss_pred HHHhCcccccccC--CChHHHHHHHHhcCCeEEEecCCCh
Q 010014 221 MVAKDPKTYINED--RSIVPMLKMLRESGRSTFLVTNSLW 258 (520)
Q Consensus 221 ~v~~np~kYi~kd--~~l~~~L~~Lr~~GKklFLiTNS~~ 258 (520)
-+.++||-++|+. ..+..+|..+.+.+.++|+.|-|++
T Consensus 261 lliDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 261 LLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp EEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred EEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3578899999995 5566777666666789999999975
No 183
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=34.29 E-value=20 Score=34.39 Aligned_cols=11 Identities=64% Similarity=0.930 Sum_probs=0.0
Q ss_pred cEEEecccccc
Q 010014 58 VAVGFDMDYTL 68 (520)
Q Consensus 58 ~~iGFDmDyTL 68 (520)
+.|-||+||||
T Consensus 4 klvvFDLD~Tl 14 (169)
T PF12689_consen 4 KLVVFDLDYTL 14 (169)
T ss_dssp SEEEE-STTTS
T ss_pred cEEEEcCcCCC
No 184
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=34.23 E-value=1e+02 Score=34.48 Aligned_cols=114 Identities=13% Similarity=0.275 Sum_probs=67.3
Q ss_pred Cccccc-ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccC
Q 010014 225 DPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 303 (520)
Q Consensus 225 np~kYi-~kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~ 303 (520)
+.||=| .|+.+-..+.+...++||+|.||+. --+...++.=++-. .-|.|.+-
T Consensus 92 ~tEKevLypn~~~~eL~e~ai~n~krVIlISD--MYlps~Il~~~L~s------------------------~g~d~~ni 145 (635)
T COG5610 92 NTEKEVLYPNKKNIELVEEAIKNEKRVILISD--MYLPSSILRTFLNS------------------------FGPDFNNI 145 (635)
T ss_pred ccceeEeeccccchHHHHHHHhCCCeEEEEec--ccCcHHHHHHHHHh------------------------cCCCccCc
Confidence 455544 5677788899999999999999964 34445555544331 11333332
Q ss_pred CCCccceeeccCCCccccccCCCCCceecCCCH-HHHHHHhcCcCCCcEEEEcccccccccccccccCceEEEeehhcHH
Q 010014 304 DNRANLFQVGDISPGLLLKEKNGTCRIFQGGSV-GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELER 382 (520)
Q Consensus 304 ~~~~~~~~v~~~~~~~~~~~~l~~g~vY~gGn~-~~l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpELe~ 382 (520)
|++--+. ..+.+. .|+. +++.++=++ ..++.+-+||+..+|++.||+. |--|-.-+-||-+
T Consensus 146 ----piY~S~e--------~rl~Kn----Sg~LFk~Vlk~EnV-d~~~w~H~GDN~~aD~l~pk~L-gI~Tlf~~s~l~~ 207 (635)
T COG5610 146 ----PIYMSSE--------FRLKKN----SGNLFKAVLKLENV-DPKKWIHCGDNWVADYLKPKNL-GISTLFYISQLLP 207 (635)
T ss_pred ----eeeecce--------eehhcc----cchHHHHHHhhcCC-ChhheEEecCchhhhhcCcccc-chhHHHHHHHhhh
Confidence 3443221 011111 1221 233444444 5789999999999999999964 6555444555543
No 185
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=33.69 E-value=44 Score=32.14 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.1
Q ss_pred HHHHHHHhcCcCCCcEEEEccccccccc
Q 010014 336 VGHLHKLLSIESSSQVLYVGDHIYGDIL 363 (520)
Q Consensus 336 ~~~l~~ll~~~~G~~VLY~GDHI~~Dil 363 (520)
...+++.+|+ ...+|++|||..- |+-
T Consensus 184 l~~l~~~lgi-~~~~vi~~GD~~N-Di~ 209 (221)
T TIGR02463 184 ANWLKATYNQ-PDVKTLGLGDGPN-DLP 209 (221)
T ss_pred HHHHHHHhCC-CCCcEEEECCCHH-HHH
Confidence 5788889998 6789999999865 543
No 186
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=32.75 E-value=18 Score=33.24 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.3
Q ss_pred EEEecccccccccCc
Q 010014 59 AVGFDMDYTLAQYKP 73 (520)
Q Consensus 59 ~iGFDmDyTLa~Y~~ 73 (520)
++-||||+||+-...
T Consensus 1 ~viFD~DGTL~D~~~ 15 (175)
T TIGR01493 1 AMVFDVYGTLVDVHG 15 (175)
T ss_pred CeEEecCCcCcccHH
Confidence 467999999997763
No 187
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=32.30 E-value=23 Score=31.54 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=18.6
Q ss_pred EEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 60 VGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 60 iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
|-||+|+||+.... .+++...+.+.+..|.+
T Consensus 1 iifD~dgtL~d~~~-----~~~~~~~~~~~~~~~~~ 31 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP-----AIFRALQRLALEEFGLE 31 (176)
T ss_dssp EEEESBTTTEEHHH-----HHHHHHHHHHHHHTTHH
T ss_pred cEEECCCCcEeCHH-----HHHHHHHHHHHHHhCCC
Confidence 46999999997654 33444443334445544
No 188
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=31.92 E-value=45 Score=33.78 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCC
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSL 257 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~ 257 (520)
-|....+|++|+++|+++.++||+.
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 3568899999999999999999854
No 189
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=31.88 E-value=50 Score=32.74 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=31.9
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
++....|+++++.|.+++|+|..++..+..++..+
T Consensus 23 ~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l 57 (264)
T COG0561 23 PETKEALARLREKGVKVVLATGRPLPDVLSILEEL 57 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc
Confidence 56778999999999999999999999999888877
No 190
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=31.52 E-value=57 Score=32.70 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=70.8
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCccCCCCccceeec
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVG 313 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~~~~~~~~~~v~ 313 (520)
|....+++.|+++|-++=|+|||+......-.++. +++.+.|..+|. +.-|..=....
T Consensus 95 PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~-------------~~~~~~f~~~v~-~d~~~v~~gKP-------- 152 (222)
T KOG2914|consen 95 PGAEKLVNHLKNNGIPVALATSSTSASFELKISRH-------------EDIFKNFSHVVL-GDDPEVKNGKP-------- 152 (222)
T ss_pred CcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh-------------hHHHHhcCCCee-cCCccccCCCC--------
Confidence 47889999999999999999999888777777765 678888988888 54443222100
Q ss_pred cCCCccccccCCCCCceecCCCHHHHHHHhcCcCC-CcEEEEcccccccccccccccCceEEEeeh
Q 010014 314 DISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS-SQVLYVGDHIYGDILRSKKVLGWRTMLVVP 378 (520)
Q Consensus 314 ~~~~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~~G-~~VLY~GDHI~~Dil~skk~~gWrT~~IVp 378 (520)
.|. +|- .-.+.+|. .. .++|-|.|.+-| ..+-+..||..++|-.
T Consensus 153 --~Pd-----------i~l-----~A~~~l~~-~~~~k~lVfeds~~G--v~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 153 --DPD-----------IYL-----KAAKRLGV-PPPSKCLVFEDSPVG--VQAAKAAGMQVVGVAT 197 (222)
T ss_pred --Cch-----------HHH-----HHHHhcCC-CCccceEEECCCHHH--HHHHHhcCCeEEEecC
Confidence 111 121 11344555 34 788899998887 4556677999888754
No 191
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=31.47 E-value=34 Score=32.80 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=32.8
Q ss_pred CCCHHHHHHHhcC---cCCCcEEEEcccccccccccccccCceEEEeehh
Q 010014 333 GGSVGHLHKLLSI---ESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 379 (520)
Q Consensus 333 gGn~~~l~~ll~~---~~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpE 379 (520)
+|....+..+.+- .+.++++.|||-+|.||+-+... |--++.+-|=
T Consensus 121 ~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m-Gs~gVw~~~g 169 (190)
T KOG2961|consen 121 ACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM-GSLGVWTEPG 169 (190)
T ss_pred CccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc-cceeEEeccc
Confidence 4556666667662 25699999999999999988765 4445555443
No 192
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.44 E-value=3.9e+02 Score=27.35 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCChHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 010014 393 LRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKF 460 (520)
Q Consensus 393 ~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~~~f 460 (520)
...+|..|+.....|+..+..+.... ..+.......+..+..++..+|..+....+.+..+.
T Consensus 228 l~~el~~l~~~~~~Le~~l~~le~~~------~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 228 LQAELESLRAKNASLERQLRELEQRL------DEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhhhhhHHHHHHHH------HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666665544332 133344566788888888888888877666665543
No 193
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=31.22 E-value=32 Score=32.94 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=0.0
Q ss_pred EEecccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 010014 60 VGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 95 (520)
Q Consensus 60 iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP 95 (520)
|.||||+||+ ++...-.-....++++|.+ .|.+
T Consensus 1 i~~DlDGTLl--~~~~~i~~~~~~al~~l~~-~Gi~ 33 (225)
T TIGR01482 1 IASDIDGTLT--DPNRAINESALEAIRKAES-VGIP 33 (225)
T ss_pred CeEeccCccC--CCCcccCHHHHHHHHHHHH-CCCE
No 194
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=31.06 E-value=36 Score=33.51 Aligned_cols=15 Identities=33% Similarity=0.251 Sum_probs=12.8
Q ss_pred CCcEEEecccccccc
Q 010014 56 NIVAVGFDMDYTLAQ 70 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~ 70 (520)
....+-||||+||+.
T Consensus 4 ~~~L~vFD~D~TLi~ 18 (212)
T COG0560 4 MKKLAVFDLDGTLIN 18 (212)
T ss_pred ccceEEEecccchhh
Confidence 456788999999998
No 195
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=31.02 E-value=25 Score=35.19 Aligned_cols=13 Identities=46% Similarity=0.478 Sum_probs=0.0
Q ss_pred CcEEEeccccccc
Q 010014 57 IVAVGFDMDYTLA 69 (520)
Q Consensus 57 i~~iGFDmDyTLa 69 (520)
|+.|-||||+||.
T Consensus 2 ~kli~~DlDGTLl 14 (272)
T PRK15126 2 ARLAAFDMDGTLL 14 (272)
T ss_pred ccEEEEeCCCcCc
No 196
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.89 E-value=2.3e+02 Score=28.86 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC-hHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHh
Q 010014 380 LEREVELLWELR-DLRKKLHLLRNERDLIEDQIHHLKWSLKSEGID-VDEQRKMCTRMDDLEYQRDKARLSHQEAQRECH 457 (520)
Q Consensus 380 Le~Ei~i~~~~~-~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~ 457 (520)
|..|+.++.+.. .+..+|..|+...+.|++....+.-.+...... .+.++.+...+..+.+++..+.+....+...+.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred hhc
Q 010014 458 QKF 460 (520)
Q Consensus 458 ~~f 460 (520)
..+
T Consensus 174 ~el 176 (239)
T COG1579 174 PEL 176 (239)
T ss_pred HHH
No 197
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=30.69 E-value=36 Score=30.55 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=11.3
Q ss_pred EEecccccccccC
Q 010014 60 VGFDMDYTLAQYK 72 (520)
Q Consensus 60 iGFDmDyTLa~Y~ 72 (520)
|=||+|+||+-..
T Consensus 2 iifD~DGTL~d~~ 14 (154)
T TIGR01549 2 ILFDIDGTLVDSS 14 (154)
T ss_pred eEecCCCcccccH
Confidence 6799999999865
No 198
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.53 E-value=3.9e+02 Score=26.24 Aligned_cols=43 Identities=26% Similarity=0.449 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCChHHHHHhhhHHHHHHHHHHHHHHh
Q 010014 396 KLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLS 448 (520)
Q Consensus 396 ~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~ 448 (520)
.|+.+......++..+..+.|.. +.+.....++.++|++|...
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~----------evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEH----------EVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455666666632 23445556666666666543
No 199
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=29.75 E-value=90 Score=32.82 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=24.2
Q ss_pred HHHHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhcccc
Q 010014 443 DKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFA 485 (520)
Q Consensus 443 ~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S~Fa~qv~RyA 485 (520)
+.+++.++.|.++....--..||..+.+-......++.+..-+
T Consensus 244 ~~V~~iv~~m~~~a~~agqSSwGPtvY~i~d~~~~~~~~~~~~ 286 (312)
T COG1907 244 EDVKEIVDEMVEAAYGAGQSSWGPTVYGIVDSREAGSVVRKLI 286 (312)
T ss_pred HHHHHHHHHHHHhcccccccccCCEEEEeccccccchHHHHHH
Confidence 4455555555544222234679999887666666665444433
No 200
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=29.43 E-value=71 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=26.9
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
|....+|+.|+++|++++++||+.-.=...+..++
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l 51 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKL 51 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999988754444444444
No 201
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=28.53 E-value=64 Score=30.54 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=31.8
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHh
Q 010014 232 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 267 (520)
Q Consensus 232 kd~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~y 267 (520)
..+.+..+|++|++.|.++.++|+.+...+...+..
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 357788999999999999999999999988887764
No 202
>PLN02887 hydrolase family protein
Probab=28.41 E-value=60 Score=37.10 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=25.2
Q ss_pred CCcEEEecccccccccCcchhHHHHHHHHHHHHHHhcCCCh
Q 010014 56 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPE 96 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYP~ 96 (520)
+|+.|.||||+||..-+. ....-.. .++++|. +.|..-
T Consensus 307 ~iKLIa~DLDGTLLn~d~-~Is~~t~-eAI~kl~-ekGi~~ 344 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKS-QISETNA-KALKEAL-SRGVKV 344 (580)
T ss_pred CccEEEEeCCCCCCCCCC-ccCHHHH-HHHHHHH-HCCCeE
Confidence 699999999999997543 2333333 4456665 467653
No 203
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=28.31 E-value=28 Score=36.58 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=28.7
Q ss_pred cCCCCcEEEecccccccccCcchh---HHHHHHHHHHHHHHhcCCChhhc
Q 010014 53 NMKNIVAVGFDMDYTLAQYKPETF---ESLAYDGTVRKLVYDLGYPEELL 99 (520)
Q Consensus 53 ~L~~i~~iGFDmDyTLa~Y~~~~~---e~L~y~~~~~~LV~~~gYP~~ll 99 (520)
-.+-.++|+||||+||..=..+ . ..-+++. ++.|- +.|++=.+.
T Consensus 124 ~~~~~~~i~~D~D~TL~~~~~~-v~irdp~V~Et-L~eLk-ekGikLaIv 170 (303)
T PHA03398 124 VWEIPHVIVFDLDSTLITDEEP-VRIRDPFVYDS-LDELK-ERGCVLVLW 170 (303)
T ss_pred EeeeccEEEEecCCCccCCCCc-cccCChhHHHH-HHHHH-HCCCEEEEE
Confidence 3345578999999999877542 2 1335554 45564 588886555
No 204
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=28.13 E-value=43 Score=31.81 Aligned_cols=13 Identities=38% Similarity=0.388 Sum_probs=10.5
Q ss_pred EEecccccccccC
Q 010014 60 VGFDMDYTLAQYK 72 (520)
Q Consensus 60 iGFDmDyTLa~Y~ 72 (520)
+-||||+||+-=.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 4699999998743
No 205
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.97 E-value=54 Score=28.59 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCCh
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLW 258 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~ 258 (520)
.+++..+++..|+.|.++..||+.+-
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36788999999999999999999764
No 206
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=27.74 E-value=87 Score=33.49 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=33.9
Q ss_pred CChHHHHHHHHhcC-CeEEEecCCChhhhHHHHHhhccC
Q 010014 234 RSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFLCGS 271 (520)
Q Consensus 234 ~~l~~~L~~Lr~~G-KklFLiTNS~~~yt~~vM~yl~g~ 271 (520)
|.+..|++.|-+.| .-+|-++||+|.+-...=.|+.-.
T Consensus 199 pGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~ 237 (373)
T COG4850 199 PGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNR 237 (373)
T ss_pred CCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcC
Confidence 67889999998888 899999999999999999998754
No 207
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.73 E-value=5.5e+02 Score=26.99 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=25.2
Q ss_pred hhcHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010014 378 PELEREVELLWE-LRDLRKKLHLLRNERDLIEDQIHHLKW 416 (520)
Q Consensus 378 pELe~Ei~i~~~-~~~~~~~l~~L~~~~~~le~~~~~l~~ 416 (520)
.+++.|++.+.. .....++|..|+..++++++++..+.-
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666664433 345667788888777777777665543
No 208
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=26.68 E-value=70 Score=32.31 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=38.8
Q ss_pred CCCceEEeCccc----------C----CCCcEEEecccccccccCcch-------hHHHHHHHHHHHHHHhcCCChh-hc
Q 010014 42 IGKQIFCNRSLN----------M----KNIVAVGFDMDYTLAQYKPET-------FESLAYDGTVRKLVYDLGYPEE-LL 99 (520)
Q Consensus 42 ~~~~VF~Nr~L~----------L----~~i~~iGFDmDyTLa~Y~~~~-------~e~L~y~~~~~~LV~~~gYP~~-ll 99 (520)
.+..|||.+..- + ++|.++||| |.-++.|-.|. .+.++.. +++.|++.+.-++. -.
T Consensus 238 ~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvigfd-~~~~~~~~~p~lTti~~~~~~~g~~-a~~~l~~~i~~~~~~~~ 315 (327)
T TIGR02417 238 LPQALFTTSYTLLEGVLDYMLERPLLDSQLHLATFG-DNYLLDFLPLPINSVAQQHRQLAWH-ALELALAAIDGKKPEPG 315 (327)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEC-CchHHHccCCCceEEeCCHHHHHHH-HHHHHHHHhcCCCCCCc
Confidence 367999986321 1 489999999 76677775442 2444443 34455544443321 11
Q ss_pred CCCCCccccccc
Q 010014 100 EWSFDWKYMVRG 111 (520)
Q Consensus 100 ~~~~dp~F~iRG 111 (520)
.....|.+.+||
T Consensus 316 ~~~i~~~li~r~ 327 (327)
T TIGR02417 316 QRYIPRTLQIRH 327 (327)
T ss_pred eEEeccEEEecC
Confidence 223467777776
No 209
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=26.15 E-value=39 Score=32.75 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=21.1
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCc
Q 010014 339 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 371 (520)
Q Consensus 339 l~~ll~~~~G~~VLY~GDHI~~Dil~skk~~gW 371 (520)
..+.++. ...+|+||||.. +|+..++ ..|.
T Consensus 152 ~l~~~~~-~~~~~i~iGDs~-~Di~aa~-~Ag~ 181 (219)
T PRK09552 152 LIRKLSD-TNDFHIVIGDSI-TDLEAAK-QADK 181 (219)
T ss_pred HHHHhcc-CCCCEEEEeCCH-HHHHHHH-HCCc
Confidence 4455565 567999999994 5877665 5566
No 210
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=25.79 E-value=43 Score=32.93 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=15.6
Q ss_pred ecccccccccCcchhHHHHHHHHHHHHHH
Q 010014 62 FDMDYTLAQYKPETFESLAYDGTVRKLVY 90 (520)
Q Consensus 62 FDmDyTLa~Y~~~~~e~L~y~~~~~~LV~ 90 (520)
||+|+||+-+.+..........+++-|-.
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~ 30 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRA 30 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHH
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHH
Confidence 79999999999866666667777776654
No 211
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=25.66 E-value=34 Score=31.58 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=12.8
Q ss_pred CcEEEecccccccc
Q 010014 57 IVAVGFDMDYTLAQ 70 (520)
Q Consensus 57 i~~iGFDmDyTLa~ 70 (520)
|+++-||+|+||..
T Consensus 1 ~~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 1 IRLLILDVDGVLTD 14 (154)
T ss_pred CeEEEEeCceeEEc
Confidence 57899999999998
No 212
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=25.51 E-value=3.1e+02 Score=27.04 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.1
Q ss_pred hhcccccccccc
Q 010014 458 QKFHKVWGQLMK 469 (520)
Q Consensus 458 ~~fn~~~GSlFR 469 (520)
+.|-|.||++|-
T Consensus 135 n~l~pgWgq~IF 146 (190)
T PF09802_consen 135 NALKPGWGQTIF 146 (190)
T ss_pred HhcccCccHHHH
Confidence 467899999653
No 213
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=24.95 E-value=80 Score=30.31 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 236 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 236 l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
...+|++|++.|.++.++||-+...+..+...+
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 679999999999999999999999998888765
No 214
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=1.2e+02 Score=33.62 Aligned_cols=41 Identities=5% Similarity=0.029 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCC
Q 010014 433 TRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQ 473 (520)
Q Consensus 433 ~~l~~l~~~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~ 473 (520)
+.+.++..+..+|+........++++.|+-.---+|+++..
T Consensus 403 ~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakh 443 (521)
T KOG1937|consen 403 QDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKH 443 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 45666677777777777777777888888777888887743
No 215
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=24.22 E-value=30 Score=33.80 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=10.2
Q ss_pred EEEecccccccc
Q 010014 59 AVGFDMDYTLAQ 70 (520)
Q Consensus 59 ~iGFDmDyTLa~ 70 (520)
.+-||||+||+.
T Consensus 3 la~FDlD~TLi~ 14 (203)
T TIGR02137 3 IACLDLEGVLVP 14 (203)
T ss_pred EEEEeCCcccHH
Confidence 367999999994
No 216
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=24.15 E-value=76 Score=35.83 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.5
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 268 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl 268 (520)
|....+|++||+.|.++.++||.+-.++..+++.+
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l 442 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL 442 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc
Confidence 66788999999999999999999999999999986
No 217
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=23.62 E-value=3e+02 Score=28.76 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010014 380 LEREVELLWELRDLRKKLHLLRNERDLIEDQI 411 (520)
Q Consensus 380 Le~Ei~i~~~~~~~~~~l~~L~~~~~~le~~~ 411 (520)
|++|+.++.++.++.++|.+|+..-....+.+
T Consensus 205 l~qEval~adK~DI~EEl~RL~sHl~~f~~~L 236 (291)
T TIGR00255 205 LEQEAALLAQRIDIAEEIDRLDSHVKEFYNIL 236 (291)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999987655555544
No 218
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=23.59 E-value=39 Score=32.13 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.3
Q ss_pred CCCCcEEEeccccccccc
Q 010014 54 MKNIVAVGFDMDYTLAQY 71 (520)
Q Consensus 54 L~~i~~iGFDmDyTLa~Y 71 (520)
++.|+.|-||+|+||..-
T Consensus 18 ~~~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 18 AENIRLLICDVDGVFSDG 35 (183)
T ss_pred hhCceEEEEcCCeeeecC
Confidence 346999999999999964
No 219
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.52 E-value=4.9e+02 Score=27.33 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 010014 434 RMDDLEYQRDKARLSHQEAQREC 456 (520)
Q Consensus 434 ~l~~l~~~~~~lr~~~~~~~~~~ 456 (520)
.+.+...+++.+.....-+...+
T Consensus 107 ~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 107 ELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544444333
No 220
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=23.36 E-value=60 Score=35.46 Aligned_cols=16 Identities=50% Similarity=0.484 Sum_probs=13.9
Q ss_pred CcEEEecccccccccC
Q 010014 57 IVAVGFDMDYTLAQYK 72 (520)
Q Consensus 57 i~~iGFDmDyTLa~Y~ 72 (520)
++++=||||+||+.=.
T Consensus 241 ~k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 241 LQALIFDMDGTLFQTD 256 (459)
T ss_pred hhheeEccCCceecch
Confidence 6899999999999743
No 221
>PRK11820 hypothetical protein; Provisional
Probab=23.27 E-value=3.1e+02 Score=28.63 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=26.5
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010014 380 LEREVELLWELRDLRKKLHLLRNERDLIEDQI 411 (520)
Q Consensus 380 Le~Ei~i~~~~~~~~~~l~~L~~~~~~le~~~ 411 (520)
|++|+.+++++.++.++|.+|...-....+.+
T Consensus 202 l~qEval~adK~DI~EEi~RL~sHl~~f~~~L 233 (288)
T PRK11820 202 LEQEVALLAQKADIAEELDRLKSHLKEFREIL 233 (288)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999987655555544
No 222
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.11 E-value=5e+02 Score=24.35 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=39.2
Q ss_pred CCCcEEEEcccccccccccccccCceEEEeehhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCChH
Q 010014 347 SSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVD 426 (520)
Q Consensus 347 ~G~~VLY~GDHI~~Dil~skk~~gWrT~~IVpELe~Ei~i~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~ 426 (520)
-|++.+|+=..---+...+ .-+.+|..||.. +++++..|......+...++.|... ++.+
T Consensus 53 ~GKqkiY~~~Q~~~~~~s~---------eel~~ld~ei~~------L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~ 112 (169)
T PF07106_consen 53 YGKQKIYFANQDELEVPSP---------EELAELDAEIKE------LREELAELKKEVKSLEAELASLSSE-----PTNE 112 (169)
T ss_pred ecceEEEeeCccccCCCCc---------hhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcC-----CCHH
Confidence 4788888765433222211 123344444433 3345555555555555555554432 1111
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhHHH
Q 010014 427 EQRKMCTRMDDLEYQRDKARLSHQE 451 (520)
Q Consensus 427 ~~~~~~~~l~~l~~~~~~lr~~~~~ 451 (520)
++...+.++.++...+...+..
T Consensus 113 ---el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 113 ---ELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2444555555555555555543
No 223
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.61 E-value=4.9e+02 Score=25.10 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=7.3
Q ss_pred hhhhhcccccc
Q 010014 477 FAHQVERFACL 487 (520)
Q Consensus 477 Fa~qv~RyAdl 487 (520)
||++|.+|.-.
T Consensus 89 YA~rISk~t~~ 99 (188)
T PF10018_consen 89 YAHRISKFTSA 99 (188)
T ss_pred HHHHHHHhcCC
Confidence 67777776544
No 224
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.55 E-value=5.7e+02 Score=25.59 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 010014 438 LEYQRDKARLSHQEAQREC 456 (520)
Q Consensus 438 l~~~~~~lr~~~~~~~~~~ 456 (520)
+...+++|.-.+.+|...+
T Consensus 96 ~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 96 IEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 225
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=22.49 E-value=80 Score=30.78 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=24.3
Q ss_pred cccc------CCChHHHHHHHHhcCCeEEEecC
Q 010014 229 YINE------DRSIVPMLKMLRESGRSTFLVTN 255 (520)
Q Consensus 229 Yi~k------d~~l~~~L~~Lr~~GKklFLiTN 255 (520)
||++ .|.+.+.|..|++.|-+++++||
T Consensus 23 yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 23 YVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred ccCcHHHhccCccHHHHHHHHHhCCCeEEEEEC
Confidence 7666 58889999999999999999999
No 226
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=21.88 E-value=71 Score=31.84 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=32.6
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhcc
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 270 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g 270 (520)
|....+++.+++.|-+||+|||-+=.--+..++-|.-
T Consensus 118 p~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~ 154 (229)
T PF03767_consen 118 PGALELYNYARSRGVKVFFITGRPESQREATEKNLKK 154 (229)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHH
Confidence 6678999999999999999999988888888888753
No 227
>PF15342 FAM212: FAM212 family
Probab=21.86 E-value=38 Score=27.20 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=17.6
Q ss_pred HhcCcCCCcEEEEccccccccc
Q 010014 342 LLSIESSSQVLYVGDHIYGDIL 363 (520)
Q Consensus 342 ll~~~~G~~VLY~GDHI~~Dil 363 (520)
|+...+..+=|..||++|.|++
T Consensus 31 LmSr~RnRQPLVLGDN~FADLV 52 (62)
T PF15342_consen 31 LMSRGRNRQPLVLGDNVFADLV 52 (62)
T ss_pred HHhccccCCCeeecccHHHHHH
Confidence 4444467899999999999985
No 228
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=21.74 E-value=1.1e+02 Score=30.22 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHh
Q 010014 233 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 267 (520)
Q Consensus 233 d~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~y 267 (520)
.++....|++|++.|.+++++|+.++..+...+.-
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~ 52 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNILKE 52 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Confidence 35678899999999999999999998766655543
No 229
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.66 E-value=24 Score=32.33 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=8.4
Q ss_pred CCCCCccCccE
Q 010014 280 CNSDWLLYFDV 290 (520)
Q Consensus 280 ~~~dWr~~FDv 290 (520)
.---||||||+
T Consensus 109 rI~~WRDYFDv 119 (130)
T COG4308 109 RIVLWRDYFDV 119 (130)
T ss_pred EEEeehhhhhH
Confidence 33569999996
No 230
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.61 E-value=4.7e+02 Score=30.07 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=15.4
Q ss_pred hhcHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh
Q 010014 378 PELEREVELLWEL-RDLRKKLHLLRNERDLIEDQIHHL 414 (520)
Q Consensus 378 pELe~Ei~i~~~~-~~~~~~l~~L~~~~~~le~~~~~l 414 (520)
.||+.|++..... ....+++..++...+.++..+..+
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555543322 222333444444444444444333
No 231
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=21.56 E-value=53 Score=30.93 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=13.8
Q ss_pred CCcEEEecccccccccC
Q 010014 56 NIVAVGFDMDYTLAQYK 72 (520)
Q Consensus 56 ~i~~iGFDmDyTLa~Y~ 72 (520)
..+++-||+|+||..-+
T Consensus 12 ~~k~~~~D~Dgtl~~~~ 28 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTR 28 (166)
T ss_pred cCcEEEEeCCCceEecC
Confidence 45789999999999744
No 232
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=21.18 E-value=1.2e+02 Score=31.45 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=29.7
Q ss_pred ChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhcc
Q 010014 235 SIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 270 (520)
Q Consensus 235 ~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g 270 (520)
....+++.+++.|-++|+|||-+=..-+..+..|--
T Consensus 149 ~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~k 184 (275)
T TIGR01680 149 ETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKK 184 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHH
Confidence 344677788999999999999998888888888843
No 233
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.11 E-value=4.1e+02 Score=27.53 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=26.9
Q ss_pred HhhhHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCCcc
Q 010014 430 KMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNS 475 (520)
Q Consensus 430 ~~~~~l~~l~~~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S 475 (520)
...+.+.+++.+++.++..+.+-+ ..|..+--++-.+|...+
T Consensus 77 ~~~~eik~l~~eI~~~~~~I~~r~----~~l~~raRAmq~nG~~t~ 118 (265)
T COG3883 77 QSKAEIKKLQKEIAELKENIVERQ----ELLKKRARAMQVNGTATS 118 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCChhH
Confidence 355678888888888888777654 334455555555665443
No 234
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.85 E-value=5.9e+02 Score=25.54 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCChHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Q 010014 392 DLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQREC 456 (520)
Q Consensus 392 ~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~ 456 (520)
+...+|+.|+..++.|.+.+.+ ..+.++--+++..|.+++.+.++++...+.+.+..
T Consensus 136 D~~arl~~l~~~~~rl~~ll~k--------a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEK--------AKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445666666665555555432 11223333456677777777777777777666554
No 235
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=20.64 E-value=3.3e+02 Score=24.16 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=13.5
Q ss_pred cccccccccCCCcchhhhhhccccc
Q 010014 462 KVWGQLMKTGYQNSRFAHQVERFAC 486 (520)
Q Consensus 462 ~~~GSlFRtg~~~S~Fa~qv~RyAd 486 (520)
..|.++||+= |.++..+.+|++
T Consensus 52 ~NW~nV~r~I---s~AS~~l~~~~~ 73 (103)
T PF08654_consen 52 ANWQNVFRAI---SMASLSLAKYSE 73 (103)
T ss_pred HhHHHHHHHH---HHHHhhhhhccc
Confidence 5588888764 344555666654
No 236
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=20.52 E-value=60 Score=32.89 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCCCcEEEecccccccccCcchhHHHHHHHHHHHH
Q 010014 54 MKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKL 88 (520)
Q Consensus 54 L~~i~~iGFDmDyTLa~Y~~~~~e~L~y~~~~~~L 88 (520)
|.+=-.|-||||+||+...+..-...+-+.+++.|
T Consensus 11 ~~~~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L 45 (266)
T PRK10187 11 LSANYAWFFDLDGTLAEIKPHPDQVVVPDNILQGL 45 (266)
T ss_pred CCCCEEEEEecCCCCCCCCCCcccccCCHHHHHHH
No 237
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.50 E-value=89 Score=27.11 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.6
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChh
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWD 259 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~ 259 (520)
+++...++..|+.|-+++.|||++-.
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 56888999999999999999998753
No 238
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.24 E-value=2.6e+02 Score=27.40 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=38.3
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCcCCCCCCCCCCCCccCccEEEECCCCCCCcc
Q 010014 234 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFH 302 (520)
Q Consensus 234 ~~l~~~L~~Lr~~GKklFLiTNS~~~yt~~vM~yl~g~~~~~~~~~~~~dWr~~FDvVIv~A~KP~FF~ 302 (520)
+.+..+|+.+|+.|.|.-|.=|-..... .-..|-+..|.|.+-+-.|+|=.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~------------------~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVE------------------ELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GG------------------GGTTTGCCSSEEEEESS-TTTSS
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCch------------------HHHHHhhhcCEEEEEEecCCCCc
Confidence 5577899999999999999877654332 12567889999999999999754
Done!