BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010015
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 190 VVDAQTL--DGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSP 247
VVD L G EG++ A +D + V ++ + + VL H + R
Sbjct: 30 VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR------------- 76
Query: 248 IINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKE 307
+I R V G Q L++ + + L+ +KP+ +LSG D + V + + +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVAL 136
Query: 308 HTVGTISWQQGNLYPSF 324
+ + ++ P F
Sbjct: 137 YALDGGGLRELARLPGF 153
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 190 VVDAQTL--DGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSP 247
VVD L G EG++ A +D + V ++ + + VL H + R
Sbjct: 30 VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR------------- 76
Query: 248 IINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKE 307
+I R V G Q L++ + + L+ +KP+ +LSG D + V + + +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVAL 136
Query: 308 HTVGTISWQQGNLYPSF 324
+ + ++ P F
Sbjct: 137 YALDGGGLRELARLPGF 153
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 190 VVDAQTL--DGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSP 247
VVD L G EG++ A +D + V ++ + + VL H + R
Sbjct: 30 VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR------------- 76
Query: 248 IINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKE 307
+I R V G Q L++ + + L+ +KP+ +LSG D + V + + +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVAL 136
Query: 308 HTVGTISWQQGNLYPSF 324
+ + ++ P F
Sbjct: 137 YALDGGGLRELARLPGF 153
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 190 VVDAQTL--DGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSP 247
VVD L G EG++ A +D + V ++ + + VL H + R
Sbjct: 30 VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR------------- 76
Query: 248 IINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKE 307
+I R V G Q L++ + + L+ +KP+ +LSG D + V + + +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVAL 136
Query: 308 HTVGTISWQQGNLYPSF 324
+ + ++ P F
Sbjct: 137 YALDGGGLRELARLPGF 153
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 190 VVDAQTL--DGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSP 247
VVD L G EG++ A +D + V ++ + + VL H + R
Sbjct: 30 VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR------------- 76
Query: 248 IINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKE 307
+I R V G Q L++ + + L+ +KP+ +LSG D + V + + +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVAL 136
Query: 308 HTVGTISWQQGNLYPSF 324
+ + ++ P F
Sbjct: 137 YALDGGGLRELARLPGF 153
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 190 VVDAQTL--DGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSP 247
VVD L G EG++ A +D + V ++ + + VL H + R
Sbjct: 10 VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR------------- 56
Query: 248 IINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKE 307
+I R V G Q L++ + + L+ +KP+ +LSG D + V + + +
Sbjct: 57 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVAL 116
Query: 308 HTVGTISWQQGNLYPSF 324
+ + ++ P F
Sbjct: 117 YALDGGGLRELARLPGF 133
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 89 RAFFASILPFKPDVILFLGD--HFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVH 146
+A ++ D IL LGD +F G D+ +QE+ F+ +F S R++ H
Sbjct: 33 KAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQET---FEDVF---SDPSLRNVPWH 86
Query: 147 FLPGNHDN-GYAALLSHKPEIVRRYEKEFGKRNYRFTVGK----VEFIVVDAQTLDGHPE 201
L GNHD+ G + +I +R+ RF + + V ++D TL G+ +
Sbjct: 87 VLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSD 146
>pdb|1RKQ|A Chain A, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
pdb|1RKQ|B Chain B, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
Length = 282
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 41 SSSMDGVDGYDKVAVIADPQIMDKTSLHLP----PKSLALEVAQFFTDLYMRRA------ 90
+ MD + KV +I +P I+D+ +P K L+ A +F ++ +R
Sbjct: 144 AEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGV 203
Query: 91 -FFASILPFKPDVILFLGDH 109
A +L KP+ I+ +GD
Sbjct: 204 KSLADVLGIKPEEIMAIGDQ 223
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 137 QDRFRDIRVHFLPGNHDNGYAALL----SHKPEIVRRYEK 172
Q+R +D VHF+ N N A+L PEI++R+EK
Sbjct: 65 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEK 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,316,788
Number of Sequences: 62578
Number of extensions: 613673
Number of successful extensions: 1276
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 11
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)