Query 010015
Match_columns 520
No_of_seqs 282 out of 2227
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 20:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08163 MPP_Cdc1 Saccharomyces 100.0 2.5E-53 5.5E-58 424.2 27.0 252 54-318 1-257 (257)
2 KOG3662 Cell division control 100.0 2.3E-41 5E-46 349.5 25.0 328 11-372 10-363 (410)
3 cd07395 MPP_CSTP1 Homo sapiens 100.0 3.3E-28 7.2E-33 243.6 26.5 243 49-333 3-254 (262)
4 cd08166 MPP_Cdc1_like_1 unchar 100.0 1.4E-28 3.1E-33 234.5 18.1 172 54-318 1-195 (195)
5 PRK11148 cyclic 3',5'-adenosin 99.9 4E-26 8.6E-31 230.6 26.2 242 47-354 11-264 (275)
6 cd07384 MPP_Cdc1_like Saccharo 99.9 1.1E-26 2.4E-31 218.9 16.3 171 54-318 1-171 (171)
7 cd08164 MPP_Ted1 Saccharomyces 99.9 1.4E-26 3E-31 220.5 12.6 165 54-314 1-189 (193)
8 cd07396 MPP_Nbla03831 Homo sap 99.9 2.3E-25 4.9E-30 224.2 21.9 231 51-333 1-263 (267)
9 cd07402 MPP_GpdQ Enterobacter 99.9 1.7E-24 3.8E-29 213.1 21.2 225 52-333 1-239 (240)
10 cd08165 MPP_MPPE1 human MPPE1 99.9 4E-23 8.8E-28 191.9 16.1 156 54-318 1-156 (156)
11 cd00839 MPP_PAPs purple acid p 99.9 4.5E-21 9.8E-26 194.7 19.8 233 48-332 2-271 (294)
12 cd07378 MPP_ACP5 Homo sapiens 99.9 1.2E-20 2.6E-25 190.1 18.4 226 51-333 1-267 (277)
13 cd07401 MPP_TMEM62_N Homo sapi 99.8 1.4E-19 3E-24 181.3 21.0 192 53-295 2-212 (256)
14 cd07399 MPP_YvnB Bacillus subt 99.8 1.5E-18 3.2E-23 169.3 20.8 197 51-333 1-203 (214)
15 cd07393 MPP_DR1119 Deinococcus 99.8 3E-18 6.4E-23 169.2 19.1 167 99-317 41-230 (232)
16 cd00842 MPP_ASMase acid sphing 99.8 5.9E-18 1.3E-22 172.6 18.3 207 88-325 56-296 (296)
17 PLN02533 probable purple acid 99.8 1.1E-17 2.4E-22 178.9 20.9 209 47-314 136-359 (427)
18 TIGR03767 P_acnes_RR metalloph 99.7 4.6E-16 9.9E-21 165.1 27.0 132 177-334 292-434 (496)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.7 1.5E-16 3.3E-21 150.0 20.0 154 96-296 20-176 (188)
20 TIGR03729 acc_ester putative p 99.7 2E-16 4.4E-21 156.6 17.9 202 52-311 1-236 (239)
21 COG1409 Icc Predicted phosphoh 99.7 6.7E-16 1.5E-20 155.2 21.0 185 51-294 1-194 (301)
22 PTZ00422 glideosome-associated 99.7 4.8E-16 1E-20 162.5 20.0 234 48-334 24-309 (394)
23 cd07383 MPP_Dcr2 Saccharomyces 99.7 2.3E-16 5E-21 151.8 16.1 122 50-235 2-128 (199)
24 cd07400 MPP_YydB Bacillus subt 99.6 1.2E-14 2.6E-19 132.1 16.7 144 53-312 1-144 (144)
25 cd07388 MPP_Tt1561 Thermus the 99.6 9.2E-14 2E-18 136.3 24.0 197 49-331 3-218 (224)
26 PF00149 Metallophos: Calcineu 99.6 4.3E-16 9.4E-21 140.0 5.9 187 51-293 1-200 (200)
27 KOG1378 Purple acid phosphatas 99.6 1.8E-14 3.8E-19 151.4 16.3 195 47-296 144-347 (452)
28 PRK11340 phosphodiesterase Yae 99.5 5.7E-14 1.2E-18 141.9 13.7 80 48-156 47-126 (271)
29 KOG2679 Purple (tartrate-resis 99.5 9.7E-14 2.1E-18 135.8 14.3 253 7-317 7-279 (336)
30 TIGR03768 RPA4764 metallophosp 99.5 1.5E-12 3.2E-17 137.3 23.0 140 178-334 294-453 (492)
31 KOG1432 Predicted DNA repair e 99.5 2.3E-12 4.9E-17 130.1 21.8 250 47-333 50-352 (379)
32 cd00840 MPP_Mre11_N Mre11 nucl 99.5 2.8E-13 6.1E-18 131.3 13.3 159 52-234 1-169 (223)
33 cd07404 MPP_MS158 Microscilla 99.5 1.1E-12 2.4E-17 122.4 14.1 138 95-310 22-162 (166)
34 PF12850 Metallophos_2: Calcin 99.4 1.7E-12 3.7E-17 118.6 12.9 55 273-331 101-155 (156)
35 cd07385 MPP_YkuE_C Bacillus su 99.3 9.2E-12 2E-16 121.2 12.6 78 50-157 1-78 (223)
36 COG2129 Predicted phosphoester 99.3 5.7E-10 1.2E-14 107.7 22.4 208 49-332 2-217 (226)
37 cd07379 MPP_239FB Homo sapiens 99.3 8.8E-11 1.9E-15 106.0 15.2 45 97-154 17-62 (135)
38 cd07397 MPP_DevT Myxococcus xa 99.3 3.5E-10 7.7E-15 111.7 19.2 161 95-293 21-208 (238)
39 PF14582 Metallophos_3: Metall 99.2 4.2E-10 9E-15 108.5 16.3 180 98-332 31-248 (255)
40 PHA02546 47 endonuclease subun 99.2 2.1E-09 4.5E-14 112.3 22.2 89 51-156 1-90 (340)
41 TIGR00040 yfcE phosphoesterase 99.1 2.3E-09 4.9E-14 99.4 16.8 49 280-332 105-153 (158)
42 cd07394 MPP_Vps29 Homo sapiens 99.1 5.4E-09 1.2E-13 99.3 19.7 65 276-354 101-169 (178)
43 cd00841 MPP_YfcE Escherichia c 99.1 4.5E-10 9.8E-15 103.3 12.0 53 275-331 96-148 (155)
44 cd00838 MPP_superfamily metall 99.1 8E-10 1.7E-14 96.2 12.6 49 94-153 21-69 (131)
45 TIGR01854 lipid_A_lpxH UDP-2,3 99.1 5.5E-09 1.2E-13 103.1 19.4 42 272-313 176-217 (231)
46 PRK05340 UDP-2,3-diacylglucosa 99.1 4.4E-09 9.4E-14 104.5 17.1 213 51-313 1-219 (241)
47 COG1408 Predicted phosphohydro 99.0 3.4E-09 7.4E-14 107.7 15.0 115 8-157 6-120 (284)
48 PRK09453 phosphodiesterase; Pr 99.0 4.7E-09 1E-13 99.7 13.7 44 282-329 119-162 (182)
49 KOG3770 Acid sphingomyelinase 99.0 2.9E-08 6.3E-13 107.4 20.3 211 87-331 197-444 (577)
50 TIGR00583 mre11 DNA repair pro 99.0 9.1E-09 2E-13 109.4 15.3 57 49-115 2-58 (405)
51 cd07403 MPP_TTHA0053 Thermus t 98.9 1.1E-08 2.4E-13 92.0 11.9 25 272-296 82-106 (129)
52 cd07398 MPP_YbbF-LpxH Escheric 98.9 1.4E-08 3.1E-13 98.3 10.6 81 97-194 28-116 (217)
53 PRK04036 DNA polymerase II sma 98.8 7.5E-08 1.6E-12 105.5 16.7 224 35-315 225-470 (504)
54 PF09423 PhoD: PhoD-like phosp 98.8 2.2E-07 4.8E-12 100.6 20.3 229 49-314 104-406 (453)
55 cd07386 MPP_DNA_pol_II_small_a 98.8 2.6E-07 5.6E-12 91.8 16.3 30 281-314 191-220 (243)
56 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.6 3.1E-06 6.7E-11 85.3 19.5 173 96-295 25-230 (262)
57 COG0420 SbcD DNA repair exonuc 98.6 1.3E-07 2.8E-12 100.4 8.7 88 51-155 1-88 (390)
58 TIGR00619 sbcd exonuclease Sbc 98.6 1.5E-07 3.3E-12 94.2 8.3 88 51-155 1-88 (253)
59 PRK10966 exonuclease subunit S 98.6 1.5E-07 3.4E-12 100.4 8.6 86 51-155 1-87 (407)
60 COG0622 Predicted phosphoester 98.5 2.7E-06 5.9E-11 80.3 14.5 55 274-332 102-156 (172)
61 COG1768 Predicted phosphohydro 98.4 4.2E-06 9.1E-11 78.2 13.7 179 51-294 1-200 (230)
62 cd07391 MPP_PF1019 Pyrococcus 98.4 2.8E-07 6.1E-12 86.8 5.3 88 54-155 1-88 (172)
63 cd07387 MPP_PolD2_C PolD2 (DNA 98.4 2.5E-06 5.3E-11 85.6 11.6 211 53-314 2-237 (257)
64 cd07406 MPP_CG11883_N Drosophi 98.3 3.7E-05 8.1E-10 77.2 17.2 49 98-157 36-85 (257)
65 cd00845 MPP_UshA_N_like Escher 98.2 0.00011 2.5E-09 72.9 17.8 51 96-157 33-84 (252)
66 cd07410 MPP_CpdB_N Escherichia 98.1 0.00018 3.9E-09 72.9 19.1 23 273-295 209-232 (277)
67 cd07411 MPP_SoxB_N Thermus the 98.1 0.00019 4.1E-09 72.3 18.2 15 99-113 50-65 (264)
68 TIGR00024 SbcD_rel_arch putati 98.1 5.1E-06 1.1E-10 81.9 5.9 87 51-154 15-101 (225)
69 cd07425 MPP_Shelphs Shewanella 98.0 5.1E-05 1.1E-09 73.9 12.2 51 97-155 30-80 (208)
70 cd07408 MPP_SA0022_N Staphyloc 98.0 0.00029 6.3E-09 70.6 17.6 48 99-157 37-84 (257)
71 COG1311 HYS2 Archaeal DNA poly 98.0 0.00027 5.9E-09 75.5 16.7 89 47-155 222-321 (481)
72 cd07390 MPP_AQ1575 Aquifex aeo 97.9 1.2E-05 2.6E-10 75.5 4.7 42 98-155 41-82 (168)
73 COG1407 Predicted ICC-like pho 97.8 3.1E-05 6.7E-10 76.2 5.8 93 50-156 19-111 (235)
74 cd07380 MPP_CWF19_N Schizosacc 97.8 0.00021 4.6E-09 66.1 11.0 46 96-153 23-68 (150)
75 PRK09419 bifunctional 2',3'-cy 97.8 0.0013 2.8E-08 79.4 20.7 79 49-157 659-738 (1163)
76 COG2908 Uncharacterized protei 97.8 8.9E-05 1.9E-09 72.8 8.9 74 99-191 29-111 (237)
77 cd07407 MPP_YHR202W_N Saccharo 97.8 0.0027 5.8E-08 64.8 19.5 24 211-234 178-201 (282)
78 COG4186 Predicted phosphoester 97.8 0.00048 1E-08 63.3 12.3 81 51-154 4-85 (186)
79 KOG3662 Cell division control 97.8 2.2E-06 4.7E-11 90.2 -3.3 112 403-519 258-378 (410)
80 PRK09558 ushA bifunctional UDP 97.7 0.0017 3.7E-08 72.3 18.0 20 275-294 236-258 (551)
81 PHA02239 putative protein phos 97.7 7.6E-05 1.7E-09 74.1 6.6 71 51-154 1-72 (235)
82 cd07409 MPP_CD73_N CD73 ecto-5 97.6 0.0023 4.9E-08 65.2 16.4 20 275-294 199-219 (281)
83 cd07412 MPP_YhcR_N Bacillus su 97.5 0.0088 1.9E-07 61.1 19.0 21 275-295 221-243 (288)
84 KOG2310 DNA repair exonuclease 97.5 0.0086 1.9E-07 64.7 18.6 118 48-177 11-157 (646)
85 PRK09419 bifunctional 2',3'-cy 97.2 0.01 2.2E-07 71.8 18.4 23 273-295 259-282 (1163)
86 PRK09418 bifunctional 2',3'-cy 97.2 0.033 7.1E-07 64.4 21.3 20 276-295 271-291 (780)
87 cd07424 MPP_PrpA_PrpB PrpA and 97.2 0.00065 1.4E-08 65.9 6.5 65 52-154 2-66 (207)
88 PRK00166 apaH diadenosine tetr 97.2 0.00073 1.6E-08 68.7 6.7 67 52-154 2-68 (275)
89 TIGR01530 nadN NAD pyrophospha 97.2 0.017 3.6E-07 64.5 18.0 47 100-157 50-96 (550)
90 cd07405 MPP_UshA_N Escherichia 97.1 0.022 4.9E-07 58.1 16.8 20 275-294 200-222 (285)
91 cd08162 MPP_PhoA_N Synechococc 97.1 0.019 4.2E-07 59.5 16.1 20 275-294 225-245 (313)
92 COG0737 UshA 5'-nucleotidase/2 97.0 0.0089 1.9E-07 66.1 13.6 163 48-235 24-218 (517)
93 PRK11439 pphA serine/threonine 96.9 0.0018 3.8E-08 63.5 5.8 65 52-154 18-82 (218)
94 cd07382 MPP_DR1281 Deinococcus 96.7 0.078 1.7E-06 53.4 16.5 122 88-230 18-150 (255)
95 cd07422 MPP_ApaH Escherichia c 96.7 0.0039 8.4E-08 62.8 7.2 53 88-155 15-67 (257)
96 PRK09968 serine/threonine-spec 96.7 0.0032 7E-08 61.7 6.3 65 52-154 16-80 (218)
97 cd07389 MPP_PhoD Bacillus subt 96.7 0.018 3.9E-07 56.2 11.4 128 96-228 26-198 (228)
98 COG3540 PhoD Phosphodiesterase 96.6 0.014 3E-07 62.5 10.8 206 96-314 165-445 (522)
99 cd07423 MPP_PrpE Bacillus subt 96.6 0.0049 1.1E-07 61.0 6.8 43 99-154 37-79 (234)
100 cd07421 MPP_Rhilphs Rhilph pho 96.6 0.0074 1.6E-07 61.7 8.1 48 99-156 34-81 (304)
101 TIGR01390 CycNucDiestase 2',3' 96.6 0.094 2E-06 59.5 17.6 19 276-294 222-241 (626)
102 cd00144 MPP_PPP_family phospho 96.5 0.0035 7.5E-08 61.0 5.0 48 96-155 21-68 (225)
103 PRK09420 cpdB bifunctional 2', 96.5 0.15 3.3E-06 58.0 18.6 18 277-294 246-264 (649)
104 PRK11907 bifunctional 2',3'-cy 96.3 0.16 3.5E-06 59.0 17.9 15 101-115 161-175 (814)
105 cd07413 MPP_PA3087 Pseudomonas 96.2 0.0097 2.1E-07 58.5 6.6 43 99-154 33-75 (222)
106 COG5555 Cytolysin, a secreted 96.1 0.0091 2E-07 59.9 5.7 208 99-333 126-365 (392)
107 smart00156 PP2Ac Protein phosp 96.1 0.37 8.1E-06 48.9 17.6 23 268-290 198-220 (271)
108 PRK13625 bis(5'-nucleosyl)-tet 96.1 0.012 2.6E-07 58.7 6.4 43 99-154 36-78 (245)
109 cd07416 MPP_PP2B PP2B, metallo 96.1 0.43 9.2E-06 49.4 17.9 47 268-314 220-269 (305)
110 TIGR00668 apaH bis(5'-nucleosy 96.0 0.012 2.5E-07 59.9 6.1 52 88-154 17-68 (279)
111 cd07418 MPP_PP7 PP7, metalloph 95.6 2.4 5.2E-05 45.1 21.5 23 268-290 271-293 (377)
112 cd07417 MPP_PP5_C PP5, C-termi 95.6 0.68 1.5E-05 48.1 17.1 42 268-314 231-274 (316)
113 KOG2863 RNA lariat debranching 95.0 0.17 3.7E-06 52.5 10.3 174 96-299 27-238 (456)
114 cd07415 MPP_PP2A_PP4_PP6 PP2A, 94.9 1.6 3.5E-05 44.7 17.0 24 268-291 212-235 (285)
115 PTZ00244 serine/threonine-prot 94.7 1.6 3.5E-05 44.9 16.5 44 268-314 222-265 (294)
116 cd07414 MPP_PP1_PPKL PP1, PPKL 94.5 0.94 2E-05 46.6 14.3 44 268-314 220-263 (293)
117 cd07420 MPP_RdgC Drosophila me 94.4 0.096 2.1E-06 54.4 6.8 42 268-314 251-294 (321)
118 PTZ00480 serine/threonine-prot 93.7 3.1 6.7E-05 43.3 16.4 42 268-314 229-272 (320)
119 PF04042 DNA_pol_E_B: DNA poly 93.6 0.1 2.2E-06 50.4 5.0 120 53-193 1-136 (209)
120 TIGR00282 metallophosphoestera 93.2 4.4 9.6E-05 41.1 16.2 86 90-194 21-116 (266)
121 cd07419 MPP_Bsu1_C Arabidopsis 90.7 0.75 1.6E-05 47.7 7.4 42 268-314 240-283 (311)
122 PTZ00239 serine/threonine prot 89.8 0.89 1.9E-05 47.0 7.1 25 268-292 213-237 (303)
123 PTZ00235 DNA polymerase epsilo 87.9 1.6 3.5E-05 44.6 7.3 91 48-156 25-123 (291)
124 cd07381 MPP_CapA CapA and rela 83.5 38 0.00082 33.2 14.6 31 281-313 207-237 (239)
125 smart00854 PGA_cap Bacterial c 82.8 40 0.00087 33.2 14.4 24 273-297 198-221 (239)
126 KOG3325 Membrane coat complex 80.9 7.3 0.00016 36.0 7.4 56 273-332 99-159 (183)
127 KOG3947 Phosphoesterases [Gene 80.3 6.7 0.00014 39.8 7.6 73 46-158 57-129 (305)
128 PF09587 PGA_cap: Bacterial ca 75.1 83 0.0018 31.1 14.0 40 272-314 208-247 (250)
129 PF06874 FBPase_2: Firmicute f 64.3 5.4 0.00012 44.7 3.0 29 87-115 172-200 (640)
130 KOG0374 Serine/threonine speci 64.2 1.9E+02 0.0042 30.3 16.3 62 268-332 231-292 (331)
131 PF13258 DUF4049: Domain of un 61.4 12 0.00026 37.1 4.5 54 103-159 88-144 (318)
132 PHA03008 hypothetical protein; 50.2 34 0.00073 33.1 5.3 43 223-293 162-204 (234)
133 KOG4419 5' nucleotidase [Nucle 45.9 2.8E+02 0.0061 31.3 12.3 54 95-157 82-136 (602)
134 KOG0372 Serine/threonine speci 42.5 21 0.00045 35.8 2.7 43 101-154 71-113 (303)
135 KOG0373 Serine/threonine speci 41.9 32 0.0007 33.9 3.9 41 103-154 76-116 (306)
136 KOG2476 Uncharacterized conser 40.3 5.5E+02 0.012 28.3 14.0 46 96-153 31-76 (528)
137 PF13277 YmdB: YmdB-like prote 39.7 4.1E+02 0.009 26.8 11.5 89 88-195 16-114 (253)
138 KOG2732 DNA polymerase delta, 38.7 65 0.0014 34.6 5.8 213 51-314 176-413 (435)
139 cd07389 MPP_PhoD Bacillus subt 36.3 31 0.00067 33.4 3.0 42 271-312 177-227 (228)
140 COG3855 Fbp Uncharacterized pr 34.6 61 0.0013 35.4 4.9 53 90-158 181-233 (648)
141 COG2908 Uncharacterized protei 34.0 49 0.0011 33.0 3.9 34 277-314 183-216 (237)
142 PF13063 DUF3925: Protein of u 33.2 21 0.00046 27.2 0.9 11 505-515 15-25 (66)
143 KOG0371 Serine/threonine prote 23.9 67 0.0015 32.6 2.8 49 95-154 81-130 (319)
144 TIGR02667 moaB_proteo molybden 23.8 3.3E+02 0.0071 25.3 7.4 34 87-120 51-84 (163)
145 cd04502 SGNH_hydrolase_like_7 23.0 2.6E+02 0.0057 25.3 6.6 38 93-133 44-84 (171)
146 PF02350 Epimerase_2: UDP-N-ac 22.5 1.1E+02 0.0025 31.9 4.5 20 91-110 59-78 (346)
147 cd07424 MPP_PrpA_PrpB PrpA and 22.0 1.1E+02 0.0024 29.3 4.0 28 282-313 169-196 (207)
No 1
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=100.00 E-value=2.5e-53 Score=424.22 Aligned_cols=252 Identities=35% Similarity=0.591 Sum_probs=221.5
Q ss_pred EEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhc
Q 010015 54 AVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFG 133 (520)
Q Consensus 54 lvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~ 133 (520)
++||||||.|+++|+++++ +...++++.+|.||+|++..++..++||+||++|||+|+|++.++++|.++++||.++|.
T Consensus 1 ~~vaDpql~~~~sy~~~~~-~~~~~~~~~~D~ylr~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~ 79 (257)
T cd08163 1 ALVADPQLVDDHTYPGRPW-ILNTLTEHFVDNYLRRNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFD 79 (257)
T ss_pred CcccCCccccCCccCCCch-hhhhhhHHhhHHHHHHHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhc
Confidence 4789999999999996554 556788999999999999998888999999999999999998889999999999999997
Q ss_pred cccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHHHHH
Q 010015 134 LKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWDFVK 213 (520)
Q Consensus 134 ~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL~ 213 (520)
.. ....|+++||||||+|++. ......++||+++||+.++.+++||++||+|||+.+.+...+.+..++++||+
T Consensus 80 ~~----~~~~pv~~VpGNHDig~~~--~~~~~~~~rf~~~Fg~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~ 153 (257)
T cd08163 80 PS----PGRKMVESLPGNHDIGFGN--GVVLPVRQRFEKYFGPTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLH 153 (257)
T ss_pred CC----CccceEEEeCCCcccCCCC--CCCHHHHHHHHHHhCCCceEEEECCEEEEEEccccccCCcccccchhHHHHHH
Confidence 42 2358999999999998864 34556789999999999999999999999999998888777788899999999
Q ss_pred Hhhcc-CCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccC
Q 010015 214 NVSID-FQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHD 292 (520)
Q Consensus 214 ~ll~~-~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~ 292 (520)
+.+.. ..+.|+|||+|+|+|++++++|||.|++..+. ....|++|||+|+++.+++||++++|++|||||||+
T Consensus 154 ~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~------~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~ 227 (257)
T cd08163 154 SFSAMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPL------PYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHD 227 (257)
T ss_pred hhhhccCCCCcEEEEeccccccCCCCCCCCccccCCCC------CCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCc
Confidence 96543 46789999999999999889999998764321 235689999999999999999999999999999999
Q ss_pred CCcEEecc----CCCCeEEEEeCceeecCC
Q 010015 293 QCTVSHES----NHEHIKEHTVGTISWQQG 318 (520)
Q Consensus 293 ~c~~~h~~----~~~~i~Eitv~S~S~~~g 318 (520)
||+++|.. ..++++|+||+||||+||
T Consensus 228 ~C~~~h~~~~~~~~~~~~E~tv~S~s~~~g 257 (257)
T cd08163 228 YCEVVHEYQFNGKSGSTREITVKSISMAMG 257 (257)
T ss_pred cceeEcccccCCCCCCceEEEecccccccC
Confidence 99999974 346899999999999997
No 2
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-41 Score=349.52 Aligned_cols=328 Identities=31% Similarity=0.475 Sum_probs=248.4
Q ss_pred HHHHHHHHHHhhcceEEEEecccCcccCCCCCCCCCCCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHH
Q 010015 11 FLCLTWTITLLYGEMVAFWIPTLRSCTWPSSSSMDGVDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRA 90 (520)
Q Consensus 11 ~l~~~w~~~~~~~E~~~~~~~~~~~C~W~~~~~~~~~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~ 90 (520)
...++|+.+++|+|..+|+.+.. +|+||.++.+..+++.+|++++|||||.|.... ..+..+++++.+|+||+|+
T Consensus 10 ~~~~~~~~lll~~e~v~~~~~~~-~c~Wp~~~~~~~~~n~~ki~~vaDPQilg~~~~----~~~~~~Ldk~~~D~~lrr~ 84 (410)
T KOG3662|consen 10 KVIILLQKLLLYVEKVIYYRALF-QCQWPGKKQWASNENSTKILLVADPQILGNWPK----KFLVSWLDKYGNDWYLRRS 84 (410)
T ss_pred hHHHHHHHHHHHHhheeeeeecc-cccCCccccccCCCCceEEEEecCchhcCCCCC----ccccchHHhhhhHHHHHHH
Confidence 55667777888999999999877 999999998877789999999999999997632 2356789999999999999
Q ss_pred HHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHH
Q 010015 91 FFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRY 170 (520)
Q Consensus 91 ~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf 170 (520)
|..++..++||+++|+|||+|+|+|.+++||.++++||++||.. ...+|++++|||||+|++. +..++..+||
T Consensus 85 f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~-----k~~~~~~~i~GNhDIGf~~--~~~~~~i~Rf 157 (410)
T KOG3662|consen 85 FDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGR-----KGNIKVIYIAGNHDIGFGN--ELIPEWIDRF 157 (410)
T ss_pred HHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCC-----CCCCeeEEeCCcccccccc--ccchhHHHHH
Confidence 99999999999999999999999999999999999999999986 3789999999999999985 3456678999
Q ss_pred HHHhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHhhccCCCCCeEEEEccC---CCCCCCCCCCCCCCCc
Q 010015 171 EKEFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIP---LYRRDETPCGPHRSSP 247 (520)
Q Consensus 171 ~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~P---L~~~~~~~Cg~~r~~~ 247 (520)
++.||+.+..|++|++.|+++|+.++.+..+..+....++++++......+.|+++++|.| ...+...+|+|.+...
T Consensus 158 e~~fg~~~r~f~v~~~tf~~~d~~~ls~~~~~~~~~~~~~fl~~~~~~~~~~~r~~~~h~p~~~~~~p~l~~~~p~~~~h 237 (410)
T KOG3662|consen 158 ESVFGPTERRFDVGNLTFVMFDSNALSGNPDINVLSEARDFLNSVSTSGDGYPRILLAHDPDLYGIKPELPTSGPDRLQH 237 (410)
T ss_pred HHhhcchhhhhccCCceeEEeeehhhcCCCchhhhhhhhhhhcccccCCCCcceeeecccchhccCCcccCCCccccccc
Confidence 9999998889999999999999999999887777888899999987766679999999998 4445555677765543
Q ss_pred ccchhhhccCCCccchhccccCHHHH-HHHHHHhCC-------------------cEEEECCccCCCcEEeccCCCCeEE
Q 010015 248 IINQRIVRTGHSQEILYQNYITEESS-NRLLDLIKP-------------------VLVLSGHDHDQCTVSHESNHEHIKE 307 (520)
Q Consensus 248 ~~~~~~~~~~~~~g~~yqn~ls~e~s-~~LL~~l~p-------------------~lVfsGH~H~~c~~~h~~~~~~i~E 307 (520)
. ..-.|.++|..+-++.. ..+++...+ .+++.||+|..|...|.....++.|
T Consensus 238 ~--------ply~g~~~qc~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~k~~~~~~g~~~ 309 (410)
T KOG3662|consen 238 I--------PLYSGSAAQCLFEPATKVIELNENIEREFDLSGDDEDHCSLLKLNYKLVVGGHDHKEYNDKHASMSSGALE 309 (410)
T ss_pred c--------eeecccccccccccccchHHHhhhhhhhcccccccccceEEeecccccccCCcCccccccccccccccccc
Confidence 2 12234567765544444 555555543 4556666666655555432345666
Q ss_pred EEeCceeecCCCCCCcEEEEEEEcCCcccCCcccccEEEeEEec---cccceeehhhHHHHHHHHHHH
Q 010015 308 HTVGTISWQQGNLYPSFRLLSASNSALLNMSNLEEAVLTRLCFL---PMQTHIYIGYLLLFIVTLVTL 372 (520)
Q Consensus 308 itv~S~S~~~g~~~Pgf~llsl~~~~~~~~~~~~~~~~t~~C~L---P~q~~~~~~Y~~~~v~t~l~l 372 (520)
+|+.++++.++. .++|......+ ....|.. |.....|++++...++-+.+|
T Consensus 310 ~tv~~~s~~~~~-~~~~i~~~~~~-------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l 363 (410)
T KOG3662|consen 310 YTVLLLSLRFGQ-DFNMIFGGIFP-------------DIKLVSSPRTELVTRRYIWKAISQIIFAAAL 363 (410)
T ss_pred cchhhhhhhccc-cHHHHhhcccc-------------ceEEEEecCCCceEEEeeHHHHHHHHHHHHH
Confidence 666666666554 34443333322 3345555 445666777744443333333
No 3
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=3.3e-28 Score=243.56 Aligned_cols=243 Identities=23% Similarity=0.246 Sum_probs=167.1
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhH-HHHHHHHHHhh-CCCCCCEEEEcCCcCCCCCCCCHHHHHHHHH
Q 010015 49 GYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTD-LYMRRAFFASI-LPFKPDVILFLGDHFDGGPYLSDEEWQESLN 126 (520)
Q Consensus 49 ~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d-~~l~r~~~~~~-~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~ 126 (520)
++++++++||+|++-....... ....+... ..+++++..+. ...+||+|+++|||++++...+ ...++++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~------~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~--~~~~~~~ 74 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEG------GGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDE--LRERQVS 74 (262)
T ss_pred CCEEEEEecCCccchhhccccC------chhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchh--hHHHHHH
Confidence 6799999999999853322100 01111111 12455555442 2348999999999999885321 1223455
Q ss_pred HHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCC-CCCCCC
Q 010015 127 RFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGH-PEGNLA 205 (520)
Q Consensus 127 Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~-~~g~i~ 205 (520)
+|.+++..- ..++|++.++||||++... ..+..++|.+.||+.+|++..|+++||+|||..+... ..+.+.
T Consensus 75 ~~~~~~~~~----~~~vp~~~i~GNHD~~~~~----~~~~~~~f~~~~g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~ 146 (262)
T cd07395 75 DLKDVLSLL----DPDIPLVCVCGNHDVGNTP----TEESIKDYRDVFGDDYFSFWVGGVFFIVLNSQLFFDPSEVPELA 146 (262)
T ss_pred HHHHHHhhc----cCCCcEEEeCCCCCCCCCC----ChhHHHHHHHHhCCcceEEEECCEEEEEeccccccCccccccch
Confidence 566666531 2478999999999986432 2345678889999999999999999999999754322 234678
Q ss_pred HHHHHHHHHhhccC---CCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHH---
Q 010015 206 AATWDFVKNVSIDF---QLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDL--- 279 (520)
Q Consensus 206 ~~ql~wL~~ll~~~---~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~--- 279 (520)
.+|++||++.+.+. ..+++||++|+|++..... +. .+ |-+ ++.+.++++.+.
T Consensus 147 ~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~-~~-~~-------------------~~~-~~~~~~~~l~~ll~~ 204 (262)
T cd07395 147 QAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPD-EE-DS-------------------YFN-IPKSVRKPLLDKFKK 204 (262)
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCC-CC-cc-------------------cCC-cCHHHHHHHHHHHHh
Confidence 99999999977654 4678999999999863211 10 00 111 223344555444
Q ss_pred hCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEcCC
Q 010015 280 IKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASNSA 333 (520)
Q Consensus 280 l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~~~ 333 (520)
.+.+++||||+|.+..... +++.+++.++++...+...|||++++++++.
T Consensus 205 ~~V~~v~~GH~H~~~~~~~----~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 254 (262)
T cd07395 205 AGVKAVFSGHYHRNAGGRY----GGLEMVVTSAIGAQLGNDKSGLRIVKVTEDK 254 (262)
T ss_pred cCceEEEECccccCCceEE----CCEEEEEcCceecccCCCCCCcEEEEECCCc
Confidence 4568999999999876554 5889999999997777778999999998774
No 4
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.96 E-value=1.4e-28 Score=234.45 Aligned_cols=172 Identities=27% Similarity=0.527 Sum_probs=144.8
Q ss_pred EEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhc
Q 010015 54 AVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFG 133 (520)
Q Consensus 54 lvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~ 133 (520)
++||||||.|.+.++. ...+++++.+|+||++++..+++.++||+||++|||+|+|+..++++|.++++||+++|.
T Consensus 1 llvADPqllg~~~~~~----~~~~~~~~~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~ 76 (195)
T cd08166 1 LLVADPQILGYQNENF----GLGWIARWDSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFE 76 (195)
T ss_pred CcccCccccCCCCCCc----cccHHHHHHHHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5799999999876542 245889999999999999999999999999999999999998889999999999999998
Q ss_pred cccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHHHHH
Q 010015 134 LKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWDFVK 213 (520)
Q Consensus 134 ~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL~ 213 (520)
.+ .++|+++||||||+|+... ...++.++||+++|
T Consensus 77 ~~-----~~~~~~~VpGNHDIG~~~~-~~~~~~v~RF~~~F--------------------------------------- 111 (195)
T cd08166 77 VP-----NGTKIIYLPGDNDIGGEEE-DPIESKIRRFEKYF--------------------------------------- 111 (195)
T ss_pred CC-----CCCcEEEECCCCCcCCCCC-CcCHHHHHHHHHhh---------------------------------------
Confidence 63 6899999999999997543 34477899999998
Q ss_pred HhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCC
Q 010015 214 NVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQ 293 (520)
Q Consensus 214 ~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~ 293 (520)
|+++|.|+....+ ..+..+...++|.+|||||+|.+
T Consensus 112 -----------i~lsH~P~~~~~~---------------------------------~~~~~~~~~~~p~~Ifs~H~H~s 147 (195)
T cd08166 112 -----------IMLSHVPLLAEGG---------------------------------QALKHVVTDLDPDLIFSAHRHKS 147 (195)
T ss_pred -----------eeeeccccccccc---------------------------------HHHHHHHHhcCceEEEEcCccce
Confidence 9999999986321 13667888899999999999999
Q ss_pred CcEEeccC-----------------------CCCeEEEEeCceeecCC
Q 010015 294 CTVSHESN-----------------------HEHIKEHTVGTISWQQG 318 (520)
Q Consensus 294 c~~~h~~~-----------------------~~~i~Eitv~S~S~~~g 318 (520)
..+.+... ...+.|+.||+||.+||
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ei~vptcsyrmg 195 (195)
T cd08166 148 SIFMYDRLLRQNSLFTRVSPDDPTLKQLILQNEVMHEIQVPTCSYRMG 195 (195)
T ss_pred eeEEeecccchhheeeeccCCcchHHHhhcCCcceEEEECCcccccCC
Confidence 87765321 12478999999999887
No 5
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.95 E-value=4e-26 Score=230.58 Aligned_cols=242 Identities=17% Similarity=0.167 Sum_probs=160.0
Q ss_pred CCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhh-CCCCCCEEEEcCCcCCCCCCCCHHHHHHHH
Q 010015 47 VDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASI-LPFKPDVILFLGDHFDGGPYLSDEEWQESL 125 (520)
Q Consensus 47 ~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~-~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~ 125 (520)
..++++|++|||+||....... . .+..+...++++++.+. ...+||+||++|||++++ +.++|
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~~-----~----~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~---~~~~~---- 74 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHET-----L----LGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDH---SSEAY---- 74 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCCc-----e----eccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCC---CHHHH----
Confidence 3477999999999996432111 0 01112224566666553 345899999999999987 45544
Q ss_pred HHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHH-HhCCcceEEEeCCEEEEEEeCCCCCCCCCCCC
Q 010015 126 NRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEK-EFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNL 204 (520)
Q Consensus 126 ~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~-~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i 204 (520)
+++.+.+. ..++|++++|||||.... ..+.+.+ .+++.++.+..++++||+|||. ..|...|.+
T Consensus 75 ~~~~~~l~------~l~~Pv~~v~GNHD~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~Lds~-~~g~~~G~l 139 (275)
T PRK11148 75 QHFAEGIA------PLRKPCVWLPGNHDFQPA--------MYSALQDAGISPAKHVLIGEHWQILLLDSQ-VFGVPHGEL 139 (275)
T ss_pred HHHHHHHh------hcCCcEEEeCCCCCChHH--------HHHHHhhcCCCccceEEecCCEEEEEecCC-CCCCcCCEe
Confidence 44666665 467899999999996311 1122221 1223333444567999999996 456667889
Q ss_pred CHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHh-CCc
Q 010015 205 AAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLI-KPV 283 (520)
Q Consensus 205 ~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l-~p~ 283 (520)
.++|++||++.+.+.++++++|+.|||+..... ++.++. ..-+.+...++++.. +++
T Consensus 140 ~~~ql~wL~~~L~~~~~~~~vv~~hH~P~~~~~---------~~~d~~-------------~l~n~~~l~~ll~~~~~v~ 197 (275)
T PRK11148 140 SEYQLEWLERKLADAPERHTLVLLHHHPLPAGC---------AWLDQH-------------SLRNAHELAEVLAKFPNVK 197 (275)
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEEcCCCCCCCc---------chhhcc-------------CCCCHHHHHHHHhcCCCce
Confidence 999999999988777777888888876654311 111100 001122334455554 457
Q ss_pred EEEECCccCCCcEEeccCCCCeEEEEeCceeecCC---------CCCCcEEEEEEEcCCcccCCcccccEEEeEEecccc
Q 010015 284 LVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQG---------NLYPSFRLLSASNSALLNMSNLEEAVLTRLCFLPMQ 354 (520)
Q Consensus 284 lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g---------~~~Pgf~llsl~~~~~~~~~~~~~~~~t~~C~LP~q 354 (520)
++||||+|....... +++..+++||+|+++. ...|||+++.+.+++ .+.++.++++..
T Consensus 198 ~vl~GH~H~~~~~~~----~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~g---------~~~~~~~~~~~~ 264 (275)
T PRK11148 198 AILCGHIHQELDLDW----NGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHADG---------SLETEVHRLADT 264 (275)
T ss_pred EEEecccChHHhceE----CCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCCC---------cEEEEEEEcCCC
Confidence 999999999765544 6899999999997632 235899999998876 578888888763
No 6
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.94 E-value=1.1e-26 Score=218.94 Aligned_cols=171 Identities=57% Similarity=1.007 Sum_probs=137.3
Q ss_pred EEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhc
Q 010015 54 AVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFG 133 (520)
Q Consensus 54 lvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~ 133 (520)
++||||||++..+++..+. +..++.....|.++++.+..++...+||+|+++|||+|++.....++|.+.+++|.++|.
T Consensus 1 llvaDpql~~~~~~~~~~~-~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~ 79 (171)
T cd07384 1 LLVADPQILDETSYPPRPK-IALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFF 79 (171)
T ss_pred CcccCccccCCCCCCCCch-hhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhc
Confidence 5799999999988874332 234567888999999999999999999999999999999876666789888999999986
Q ss_pred cccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHHHHH
Q 010015 134 LKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWDFVK 213 (520)
Q Consensus 134 ~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL~ 213 (520)
..... ...+|+++|+||||+++...... ....++|+++|
T Consensus 80 ~~~~~-~~~~~~~~v~GNHD~g~~~~~~~-~~~~~~f~~~f--------------------------------------- 118 (171)
T cd07384 80 LPSNG-LEDIPVYYVPGNHDIGYGEVISF-PEVVDRFERYF--------------------------------------- 118 (171)
T ss_pred ccccc-cCCceEEEECCccccCCCCcccc-HHHHHHHHhhh---------------------------------------
Confidence 32000 02689999999999988643211 35677888877
Q ss_pred HhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCC
Q 010015 214 NVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQ 293 (520)
Q Consensus 214 ~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~ 293 (520)
|+|+|.|.++ +++..+++++||||+|.+
T Consensus 119 -----------i~l~H~p~~~-----------------------------------------~~~~~~~~~~lsGH~H~~ 146 (171)
T cd07384 119 -----------ILLTHIPLYR-----------------------------------------LLDTIKPVLILSGHDHDQ 146 (171)
T ss_pred -----------eeEECCccHH-----------------------------------------HHhccCceEEEeCcccCC
Confidence 9999999642 344456789999999999
Q ss_pred CcEEeccCCCCeEEEEeCceeecCC
Q 010015 294 CTVSHESNHEHIKEHTVGTISWQQG 318 (520)
Q Consensus 294 c~~~h~~~~~~i~Eitv~S~S~~~g 318 (520)
|..+|.+..+.++|+||||+||.||
T Consensus 147 ~~~~~~~~~~~~~ei~v~S~s~~~~ 171 (171)
T cd07384 147 CEVVHSSKAGSVREITVKSFSWRMG 171 (171)
T ss_pred eEEEecCCCCCceEEeeccchhhcc
Confidence 9999987778899999999999986
No 7
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=99.94 E-value=1.4e-26 Score=220.53 Aligned_cols=165 Identities=29% Similarity=0.505 Sum_probs=130.8
Q ss_pred EEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhc
Q 010015 54 AVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFG 133 (520)
Q Consensus 54 lvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~ 133 (520)
++||||||.|.++|+ +..+..+++.+.+|.||++.++.++..++||.|+|||||+|++ |.+++||.++++||.++|.
T Consensus 1 l~vADPQi~d~~~~~--~~~~~~rld~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~-w~~D~ef~~~~~RF~~if~ 77 (193)
T cd08164 1 LALGDPQIEGDHKIE--NYGFKGRLDLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQ-WIDDEEFAKRADRYRRRFF 77 (193)
T ss_pred CcccCccccCCCCCC--CCcccceehhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCC-cccHHHHHHHHHHHHHHhc
Confidence 478999999999885 3333356778899999999999999999999999999999875 8899999999999999985
Q ss_pred cccC------------CCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCCCC
Q 010015 134 LKSQ------------DRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGHPE 201 (520)
Q Consensus 134 ~~~~------------~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~ 201 (520)
.... ....++|++.|+||||+|++. ......++||+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~~~--~~~~~~i~RF~~~F--------------------------- 128 (193)
T cd08164 78 GRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGYGG--EVTEARIERFESLF--------------------------- 128 (193)
T ss_pred CCcccccccccccccccccCCceEEEECCcccCCCCC--ccchHHhhheheeE---------------------------
Confidence 3211 012368999999999999864 24556678888777
Q ss_pred CCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhC
Q 010015 202 GNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIK 281 (520)
Q Consensus 202 g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~ 281 (520)
|+|+|.|.+... ...+
T Consensus 129 -----------------------ilL~H~P~~~~~-----------------------------------------~~~~ 144 (193)
T cd08164 129 -----------------------ILLTHVPLYKIF-----------------------------------------LEGK 144 (193)
T ss_pred -----------------------EEEEcccceecc-----------------------------------------ccCC
Confidence 999999976410 0124
Q ss_pred CcEEEECCccCCCcEEeccC------------CCCeEEEEeCcee
Q 010015 282 PVLVLSGHDHDQCTVSHESN------------HEHIKEHTVGTIS 314 (520)
Q Consensus 282 p~lVfsGH~H~~c~~~h~~~------------~~~i~Eitv~S~S 314 (520)
++++||||+|-.|.+.+... ...++|+||.|+.
T Consensus 145 ~dl~lSGHtHgGqi~~~~~~~~~~~~~~~~~~~~~~~e~tv~smm 189 (193)
T cd08164 145 PGLILTGHDHEGCDYQHPSNPSVTWATSLEESGNNVREYTLRSMM 189 (193)
T ss_pred CCEEEeCccCCCeEEEecCCCCCcccccccCCCCCceEEEehHhh
Confidence 68999999999999886522 2468999999973
No 8
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.94 E-value=2.3e-25 Score=224.19 Aligned_cols=231 Identities=20% Similarity=0.219 Sum_probs=154.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKH 130 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~ 130 (520)
||++++||+|+.+..... .. ... .+-..++++++.+ +..+||+||++|||++++...+++ .++.+.+
T Consensus 1 ~r~~~iSD~H~~~~~~~~--~~----~~~--~~~~~l~~~i~~i-~~~~~d~vv~~GDlv~~~~~~~~~----~~~~~~~ 67 (267)
T cd07396 1 FRFGIIADIQYADEDDTR--PR----YYR--NSLEKLEEAVEEW-NRESLDFVVQLGDIIDGDNARAEE----ALDAVLA 67 (267)
T ss_pred CeEEEEeccccccCCCcc--cc----hHH--HhHHHHHHHHHHH-HcCCCCEEEECCCeecCCCchHHH----HHHHHHH
Confidence 699999999987643321 10 000 0112245555544 445699999999999888432223 3444566
Q ss_pred HhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCC--CC---------
Q 010015 131 IFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLD--GH--------- 199 (520)
Q Consensus 131 if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~--g~--------- 199 (520)
.+. ..++|++.+|||||...... ......+...++..+|+|..++++||+||+.... +.
T Consensus 68 ~l~------~l~~p~~~v~GNHD~~~~~~----~~~~~~~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~ 137 (267)
T cd07396 68 ILD------RLKGPVHHVLGNHDLYNPSR----EYLLLYTLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAEN 137 (267)
T ss_pred HHH------hcCCCEEEecCccccccccH----hhhhcccccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhh
Confidence 665 36789999999999753321 0001123344567789999999999999996431 10
Q ss_pred ------------------CCCCCCHHHHHHHHHhhccC--CCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCC
Q 010015 200 ------------------PEGNLAAATWDFVKNVSIDF--QLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHS 259 (520)
Q Consensus 200 ------------------~~g~i~~~ql~wL~~ll~~~--~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~ 259 (520)
..|.+.++|++||++.+... .+.++|+++|+|++.... . +.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~---~--~~-------------- 198 (267)
T cd07396 138 ADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPEST---S--PH-------------- 198 (267)
T ss_pred HHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCC---C--cc--------------
Confidence 14678999999999976543 357899999999976321 0 00
Q ss_pred ccchhccccCHHHHHHHHHHh-CCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEcCC
Q 010015 260 QEILYQNYITEESSNRLLDLI-KPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASNSA 333 (520)
Q Consensus 260 ~g~~yqn~ls~e~s~~LL~~l-~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~~~ 333 (520)
.+..+.+...++++.. +.+++||||+|......+ +++++++.||+|.+ +...|.|.++.++.+-
T Consensus 199 -----~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~----~gi~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 263 (267)
T cd07396 199 -----GLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQR----HGIHFLTLEGMVET-PPESNAFGVVIVYEDR 263 (267)
T ss_pred -----ccccCHHHHHHHHHhCCCEEEEEcCCcCCCCcccc----CCeeEEEechhhcC-CCCCCceEEEEEeCCc
Confidence 0011123344555553 347999999999976554 78999999999999 7778999999998873
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.93 E-value=1.7e-24 Score=213.09 Aligned_cols=225 Identities=24% Similarity=0.300 Sum_probs=150.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCC-CCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHH
Q 010015 52 KVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILP-FKPDVILFLGDHFDGGPYLSDEEWQESLNRFKH 130 (520)
Q Consensus 52 rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~-~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~ 130 (520)
||+++||+|+........... .....+.+.++.+... .+||+|+++|||++++ ..++|+ ++.+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~---------~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~---~~~~~~----~~~~ 64 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGV---------DTAASLEAVLAHINALHPRPDLVLVTGDLTDDG---SPESYE----RLRE 64 (240)
T ss_pred CEEEEeCCccCCCCcceecCc---------CHHHHHHHHHHHHHhcCCCCCEEEECccCCCCC---CHHHHH----HHHH
Confidence 689999999975421000000 0112244555444322 4899999999999987 445444 3555
Q ss_pred HhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHH---hCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHH
Q 010015 131 IFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKE---FGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAA 207 (520)
Q Consensus 131 if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~---Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ 207 (520)
.+. ..++|++.++||||.... ....|... .+..+|++++++++||++|+.. .+...+.+.++
T Consensus 65 ~l~------~~~~p~~~v~GNHD~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~-~~~~~~~~~~~ 129 (240)
T cd07402 65 LLA------ALPIPVYLLPGNHDDRAA--------MRAVFPELPPAPGFVQYVVDLGGWRLILLDSSV-PGQHGGELCAA 129 (240)
T ss_pred HHh------hcCCCEEEeCCCCCCHHH--------HHHhhccccccccccceeEecCCEEEEEEeCCC-CCCcCCEECHH
Confidence 554 357899999999996321 11222222 2345788999999999999963 34445678999
Q ss_pred HHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHh-CCcEEE
Q 010015 208 TWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLI-KPVLVL 286 (520)
Q Consensus 208 ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l-~p~lVf 286 (520)
|++||++.+....++++|+++|+|++.... . ..+ . + ...+.+...++++.. +++++|
T Consensus 130 ql~wL~~~L~~~~~~~~il~~H~pp~~~~~---~------~~~----------~--~-~~~~~~~~~~~l~~~~~v~~v~ 187 (240)
T cd07402 130 QLDWLEAALAEAPDKPTLVFLHHPPFPVGI---A------WMD----------A--I-GLRNAEALAAVLARHPNVRAIL 187 (240)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCccCCc---h------hhh----------h--h-hCCCHHHHHHHHhcCCCeeEEE
Confidence 999999988777788999999999976421 0 000 0 0 001123344456655 568999
Q ss_pred ECCccCCCcEEeccCCCCeEEEEeCceeecCCC---------CCCcEEEEEEEcCC
Q 010015 287 SGHDHDQCTVSHESNHEHIKEHTVGTISWQQGN---------LYPSFRLLSASNSA 333 (520)
Q Consensus 287 sGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~---------~~Pgf~llsl~~~~ 333 (520)
|||+|....... ++++.+++||+|++..- ..|||..++|..++
T Consensus 188 ~GH~H~~~~~~~----~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
T cd07402 188 CGHVHRPIDGSW----GGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLHEDG 239 (240)
T ss_pred ECCcCchHHeEE----CCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEecCC
Confidence 999999877665 68999999999966431 25799999987653
No 10
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.90 E-value=4e-23 Score=191.86 Aligned_cols=156 Identities=39% Similarity=0.720 Sum_probs=124.1
Q ss_pred EEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhc
Q 010015 54 AVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFG 133 (520)
Q Consensus 54 lvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~ 133 (520)
++|||+||++.... ..++++..|.++.+.+..++...+||+|+++||+++++.+.++++|.+...+|.+++.
T Consensus 1 ~~isD~HL~~~~~~--------~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~ 72 (156)
T cd08165 1 MFLADTHLLGSILG--------HWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFG 72 (156)
T ss_pred CccccchhcCCccc--------HHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhc
Confidence 47999999754431 1356777888999999988889999999999999998876667778777888888876
Q ss_pred cccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHHHHH
Q 010015 134 LKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWDFVK 213 (520)
Q Consensus 134 ~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL~ 213 (520)
. ..+.|+++++||||++... .......++|++.|
T Consensus 73 ~-----~~~~~i~~v~GNHD~~~~~--~~~~~~~~~~~~~~--------------------------------------- 106 (156)
T cd08165 73 H-----PPDLPLHVVVGNHDIGFHY--EMTTYKLERFEKVF--------------------------------------- 106 (156)
T ss_pred c-----CCCCeEEEEcCCCCcCCCC--ccCHHHHHHHHHHe---------------------------------------
Confidence 3 2468999999999987643 23455566777665
Q ss_pred HhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCC
Q 010015 214 NVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQ 293 (520)
Q Consensus 214 ~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~ 293 (520)
|+|+|.|.+. ++...++.++||||+|..
T Consensus 107 -----------~~l~H~p~~~-----------------------------------------~~~~~~~~~~l~GH~H~~ 134 (156)
T cd08165 107 -----------ILLQHFPLYR-----------------------------------------LLQWLKPRLVLSGHTHSF 134 (156)
T ss_pred -----------eeeeCChHHH-----------------------------------------HHHhhCCCEEEEcccCCC
Confidence 8999999632 334456789999999999
Q ss_pred CcEEeccCCCCeEEEEeCceeecCC
Q 010015 294 CTVSHESNHEHIKEHTVGTISWQQG 318 (520)
Q Consensus 294 c~~~h~~~~~~i~Eitv~S~S~~~g 318 (520)
|.+.|. +++.|+|+||+||+++
T Consensus 135 ~~~~~~---~~~~e~~~~~~~~~~~ 156 (156)
T cd08165 135 CEVTHP---DGTPEVTVPSFSWRNR 156 (156)
T ss_pred ceeEEE---CCEEEEEEecceecCC
Confidence 999886 8999999999999864
No 11
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.87 E-value=4.5e-21 Score=194.70 Aligned_cols=233 Identities=19% Similarity=0.197 Sum_probs=140.6
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhC-CCCCCEEEEcCCcCCCCCCCCHHHHHHHHH
Q 010015 48 DGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASIL-PFKPDVILFLGDHFDGGPYLSDEEWQESLN 126 (520)
Q Consensus 48 ~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~-~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~ 126 (520)
..++|+++++|.|.....+ ++.+..+.. ..+||+||++||+++++...+.++|....+
T Consensus 2 ~~~~~f~v~gD~~~~~~~~---------------------~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~ 60 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNS---------------------TNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMR 60 (294)
T ss_pred CCcEEEEEEEECCCCCCCc---------------------HHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHH
Confidence 4679999999999752111 111222222 578999999999997653322245555433
Q ss_pred HHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHH------HHhCCcceEEEeCCEEEEEEeCCCCCCCC
Q 010015 127 RFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYE------KEFGKRNYRFTVGKVEFIVVDAQTLDGHP 200 (520)
Q Consensus 127 Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~------~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~ 200 (520)
.+..+. ..+|+++++||||...............++. ...+..+|+|++|+++||+|||.....
T Consensus 61 ~~~~~~--------~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~-- 130 (294)
T cd00839 61 QIEPLA--------SYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFY-- 130 (294)
T ss_pred HHHHHH--------hcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccc--
Confidence 333332 4689999999999865432110000000010 111245789999999999999964321
Q ss_pred CCCCCHHHHHHHHHhhccCCC---CCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHH
Q 010015 201 EGNLAAATWDFVKNVSIDFQL---LPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLL 277 (520)
Q Consensus 201 ~g~i~~~ql~wL~~ll~~~~~---~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL 277 (520)
.+.+..+|++||++.++.... ..+|+++|+|++......+. . ..+.-..+....|+
T Consensus 131 ~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~--~-------------------~~~~~~~~~l~~ll 189 (294)
T cd00839 131 GDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDD--C-------------------IEGEKMRAALEDLF 189 (294)
T ss_pred cCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCccccc--c-------------------chhHHHHHHHHHHH
Confidence 346788999999997654332 34899999999874321000 0 00000112344677
Q ss_pred HHhCCcEEEECCccCCCcEEec------------cCCCCeEEEEeCceeecCC---------------CCCCcEEEEEEE
Q 010015 278 DLIKPVLVLSGHDHDQCTVSHE------------SNHEHIKEHTVGTISWQQG---------------NLYPSFRLLSAS 330 (520)
Q Consensus 278 ~~l~p~lVfsGH~H~~c~~~h~------------~~~~~i~Eitv~S~S~~~g---------------~~~Pgf~llsl~ 330 (520)
+..+.+++||||+|.+.+...- ....++..+++|+-+-..+ ....||..+++.
T Consensus 190 ~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 269 (294)
T cd00839 190 YKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYGFGRLTVH 269 (294)
T ss_pred HHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEeccCCEEEEEEE
Confidence 7778899999999998765421 1224677888776542111 123688888887
Q ss_pred cC
Q 010015 331 NS 332 (520)
Q Consensus 331 ~~ 332 (520)
++
T Consensus 270 ~~ 271 (294)
T cd00839 270 NS 271 (294)
T ss_pred ec
Confidence 65
No 12
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.86 E-value=1.2e-20 Score=190.12 Aligned_cols=226 Identities=23% Similarity=0.297 Sum_probs=143.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcC-CCCCCC-CHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHF-DGGPYL-SDEEWQESLNRF 128 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~-d~G~~~-s~~e~~~~~~Rf 128 (520)
++|++++|....+... . . .+.+.+..++...+||+||++||++ ++|... .+++|.+ .|
T Consensus 1 ~~f~~~gD~g~~~~~~----------~-~------~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~---~~ 60 (277)
T cd07378 1 LRFLALGDWGGGGTAG----------Q-K------AVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFET---TF 60 (277)
T ss_pred CeEEEEeecCCCCCHH----------H-H------HHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHH---HH
Confidence 4799999998652110 0 0 1223333344457899999999997 444321 1233433 24
Q ss_pred HHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHH-------HhCCcceEEEeC------CEEEEEEeCCC
Q 010015 129 KHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEK-------EFGKRNYRFTVG------KVEFIVVDAQT 195 (520)
Q Consensus 129 ~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~-------~Fg~~ny~~~ig------~~~fV~LDS~~ 195 (520)
.+++... ..++|+++++||||.......+ ..|.. .++..+|++..+ +++||+|||..
T Consensus 61 ~~~~~~~----~~~~P~~~v~GNHD~~~~~~~~------~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~ 130 (277)
T cd07378 61 EDVYSAP----SLQVPWYLVLGNHDYSGNVSAQ------IDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVP 130 (277)
T ss_pred HHHccch----hhcCCeEEecCCcccCCCchhe------eehhccCCCCCccCcchheEEEeecCCCCCEEEEEEEeChh
Confidence 4555421 2578999999999986432100 11111 134457888887 79999999976
Q ss_pred CCCC----------CCCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhc
Q 010015 196 LDGH----------PEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQ 265 (520)
Q Consensus 196 l~g~----------~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yq 265 (520)
+... ..+.+..+|++||++.+.+....++||++|+|++..... + .
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~~~~~iv~~H~P~~~~~~~--~---~-------------------- 185 (277)
T cd07378 131 LCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAASTADWKIVVGHHPIYSSGEH--G---P-------------------- 185 (277)
T ss_pred HcCccccccccccCcchhhHHHHHHHHHHHHHhcCCCeEEEEeCccceeCCCC--C---C--------------------
Confidence 5321 245678999999999887766688999999999863210 0 0
Q ss_pred cccCHHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCC----------------CCCCcEEEEEE
Q 010015 266 NYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQG----------------NLYPSFRLLSA 329 (520)
Q Consensus 266 n~ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g----------------~~~Pgf~llsl 329 (520)
+....+....+++..+.+++||||+|.+...... ..++.++++|+.+...+ ....||..+++
T Consensus 186 ~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~--~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v 263 (277)
T cd07378 186 TSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDD--GSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLEL 263 (277)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCcccceeeecC--CCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEE
Confidence 0000122345666667799999999998766542 24899999988763211 12368888888
Q ss_pred EcCC
Q 010015 330 SNSA 333 (520)
Q Consensus 330 ~~~~ 333 (520)
.++.
T Consensus 264 ~~~~ 267 (277)
T cd07378 264 TKEE 267 (277)
T ss_pred ecCE
Confidence 8763
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.84 E-value=1.4e-19 Score=181.32 Aligned_cols=192 Identities=21% Similarity=0.175 Sum_probs=115.1
Q ss_pred EEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCC------CHHHHHHHHH
Q 010015 53 VAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYL------SDEEWQESLN 126 (520)
Q Consensus 53 ilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~------s~~e~~~~~~ 126 (520)
|+++||+|++.... +. . .. + .+.+...++..+||+|+++||++|..... ...+|.++++
T Consensus 2 ~~~iSDlH~g~~~~----~~-~-----~~----~-~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T cd07401 2 FVHISDIHVSSFHP----PN-R-----AQ----D-ETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYN 66 (256)
T ss_pred EEEecccccCCcCc----hh-h-----hh----H-HHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHH
Confidence 78999999974321 10 0 00 0 11222345677999999999999876421 2334544333
Q ss_pred HHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHh---CCcce--EEE--eCCEEEEEEeCCCCCCC
Q 010015 127 RFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEF---GKRNY--RFT--VGKVEFIVVDAQTLDGH 199 (520)
Q Consensus 127 Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~F---g~~ny--~~~--ig~~~fV~LDS~~l~g~ 199 (520)
.+.+.-. ....|++.++||||+....... ...+.|.++. +...+ .+. .|+++||+|||....+.
T Consensus 67 ~~~~~~~------~~~~p~~~v~GNHD~~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~ 137 (256)
T cd07401 67 ILKESSV------INKEKWFDIRGNHDLFNIPSLD---SENNYYRKYSATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGP 137 (256)
T ss_pred HHHHhCC------CCcceEEEeCCCCCcCCCCCcc---chhhHHHHhheecCCCccceEEEecCCCEEEEEEcCccCCCC
Confidence 3322111 1358999999999984221111 1123344433 33322 222 49999999999754332
Q ss_pred C-----CCCCCHHHHHHHHHhhccC-CCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHH
Q 010015 200 P-----EGNLAAATWDFVKNVSIDF-QLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESS 273 (520)
Q Consensus 200 ~-----~g~i~~~ql~wL~~ll~~~-~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s 273 (520)
. .|.+.++|++||++.+.+. ..+++||++|+|+...... +. . .....
T Consensus 138 ~~~~~~~g~l~~~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~-~~-----------------------~---~~~~~ 190 (256)
T cd07401 138 KRPFNFFGSLDKKLLDRLEKELEKSTNSNYTIWFGHYPTSTIISP-SA-----------------------K---SSSKF 190 (256)
T ss_pred CCCCceeccCCHHHHHHHHHHHHhcccCCeEEEEEcccchhccCC-Cc-----------------------c---hhHHH
Confidence 2 3778999999999866543 3567999999998642110 00 0 00114
Q ss_pred HHHHHHhCCcEEEECCccCCCc
Q 010015 274 NRLLDLIKPVLVLSGHDHDQCT 295 (520)
Q Consensus 274 ~~LL~~l~p~lVfsGH~H~~c~ 295 (520)
.++++..+++++||||+|.+..
T Consensus 191 ~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 191 KDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred HHHHHhcCCcEEEeCCccCCCc
Confidence 4566777779999999999866
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.81 E-value=1.5e-18 Score=169.30 Aligned_cols=197 Identities=21% Similarity=0.272 Sum_probs=118.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKH 130 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~ 130 (520)
|++++++|+|+..... +. .+.+ .+.+..+ .+...+||+|+++||+++.+. ..++|....+.++.
T Consensus 1 f~~~~~~D~q~~~~~~----~~----~~~~-----~~~~i~~-~~~~~~~d~iv~~GDl~~~~~--~~~~~~~~~~~~~~ 64 (214)
T cd07399 1 FTLAVLPDTQYYTESY----PE----VFDA-----QTDWIVD-NAEALNIAFVLHLGDIVDDGD--NDAEWEAADKAFAR 64 (214)
T ss_pred CEEEEecCCCcCCcCC----HH----HHHH-----HHHHHHH-HHHHcCCCEEEECCCccCCCC--CHHHHHHHHHHHHH
Confidence 6899999999864311 11 1111 1222222 234568999999999999872 25566654433333
Q ss_pred HhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHH
Q 010015 131 IFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWD 210 (520)
Q Consensus 131 if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~ 210 (520)
+ . ..++|+++++|||| .++.+|+. .+.+|++
T Consensus 65 l-~------~~~~p~~~~~GNHD---------------------------------~~~~ld~~---------~~~~ql~ 95 (214)
T cd07399 65 L-D------KAGIPYSVLAGNHD---------------------------------LVLALEFG---------PRDEVLQ 95 (214)
T ss_pred H-H------HcCCcEEEECCCCc---------------------------------chhhCCCC---------CCHHHHH
Confidence 2 1 24689999999999 13444542 3588999
Q ss_pred HHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhcccc--CHHHHHHHHHHh-CCcEEEE
Q 010015 211 FVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYI--TEESSNRLLDLI-KPVLVLS 287 (520)
Q Consensus 211 wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~l--s~e~s~~LL~~l-~p~lVfs 287 (520)
||++.+++.+++|+|+++|+|++.... ..+. ..|.+.+ ..+...+|++.. +.++|||
T Consensus 96 WL~~~L~~~~~~~~iv~~H~p~~~~~~----~~~~----------------~~~~~~~~~~~~~~~~ll~~~~~V~~v~~ 155 (214)
T cd07399 96 WANEVLKKHPDRPAILTTHAYLNCDDS----RPDS----------------IDYDSDVNDGQQIWDKLVKKNDNVFMVLS 155 (214)
T ss_pred HHHHHHHHCCCCCEEEEecccccCCCC----cCcc----------------cccccccccHHHHHHHHHhCCCCEEEEEc
Confidence 999988877789999999999985321 0000 0011000 111233455555 3478999
Q ss_pred CCccCCCcEEe---ccCCCCeEEEEeCceeecCCCCCCcEEEEEEEcCC
Q 010015 288 GHDHDQCTVSH---ESNHEHIKEHTVGTISWQQGNLYPSFRLLSASNSA 333 (520)
Q Consensus 288 GH~H~~c~~~h---~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~~~ 333 (520)
||+|.+..... ...++.+.++-+.--.-.+|. +|.|+++++++++
T Consensus 156 GH~H~~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g-~~~~r~~~f~~~~ 203 (214)
T cd07399 156 GHVHGAGRTTLVSVGDAGRTVHQMLADYQGEPNGG-NGFLRLLEFDPDN 203 (214)
T ss_pred cccCCCceEEEcccCCCCCEeeEEeecccCCCCCC-cceEEEEEEecCC
Confidence 99999876655 111223433332221111233 6899999999885
No 15
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.80 E-value=3e-18 Score=169.18 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=108.0
Q ss_pred CCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCC--
Q 010015 99 KPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGK-- 176 (520)
Q Consensus 99 ~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~-- 176 (520)
+||+|+++|||++.+. .+++...++ .+. ....|+++|+||||..... .+++++.+..
T Consensus 41 ~~D~viiaGDl~~~~~---~~~~~~~l~----~l~------~l~~~v~~V~GNHD~~~~~--------~~~~~~~l~~~~ 99 (232)
T cd07393 41 PEDIVLIPGDISWAMK---LEEAKLDLA----WID------ALPGTKVLLKGNHDYWWGS--------ASKLRKALEESR 99 (232)
T ss_pred CCCEEEEcCCCccCCC---hHHHHHHHH----HHH------hCCCCeEEEeCCccccCCC--------HHHHHHHHHhcC
Confidence 8999999999997662 223333222 222 2334799999999973221 2334333322
Q ss_pred ----cceEEEeCCEEEEEEeCCCCCCCC------------CCCCCHHHHHHHHHhhccCC----CCCeEEEEccCCCCCC
Q 010015 177 ----RNYRFTVGKVEFIVVDAQTLDGHP------------EGNLAAATWDFVKNVSIDFQ----LLPRVLLTHIPLYRRD 236 (520)
Q Consensus 177 ----~ny~~~ig~~~fV~LDS~~l~g~~------------~g~i~~~ql~wL~~ll~~~~----~~p~ILltH~PL~~~~ 236 (520)
.+.++.++++.|++++.-++++.. .+.+..++++||++.+...+ ..++|+++|+|++...
T Consensus 100 ~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~ 179 (232)
T cd07393 100 LALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN 179 (232)
T ss_pred eEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC
Confidence 156677899999998743232211 23445678999998665422 2479999999987532
Q ss_pred CCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCCCcEE-eccCCCCeEEEEeCceee
Q 010015 237 ETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVS-HESNHEHIKEHTVGTISW 315 (520)
Q Consensus 237 ~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~-h~~~~~~i~Eitv~S~S~ 315 (520)
. ..+....+++..+.+++|+||+|...... .....++++.+++++.|+
T Consensus 180 ~-------------------------------~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~ 228 (232)
T cd07393 180 G-------------------------------DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYL 228 (232)
T ss_pred C-------------------------------CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhc
Confidence 1 00123456666677999999999987543 222237899999999999
Q ss_pred cC
Q 010015 316 QQ 317 (520)
Q Consensus 316 ~~ 317 (520)
|+
T Consensus 229 ~~ 230 (232)
T cd07393 229 NF 230 (232)
T ss_pred Cc
Confidence 86
No 16
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.78 E-value=5.9e-18 Score=172.57 Aligned_cols=207 Identities=16% Similarity=0.105 Sum_probs=124.4
Q ss_pred HHHHHHhh-CCCCCCEEEEcCCcCCCCCCCCHHHHHH--HHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCC--
Q 010015 88 RRAFFASI-LPFKPDVILFLGDHFDGGPYLSDEEWQE--SLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSH-- 162 (520)
Q Consensus 88 ~r~~~~~~-~~~~PD~VI~lGDL~d~G~~~s~~e~~~--~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~-- 162 (520)
.++++.+. ...+||+||++||+++.+.+....+... ..+.+.+.+... ..++|++.++||||.........
T Consensus 56 ~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~pv~~~~GNHD~~p~~~~~~~~ 131 (296)
T cd00842 56 ESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKA----FPDTPVYPALGNHDSYPVNQFPPNN 131 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHh----CCCCCEEEcCCCCCCCcccccCCcc
Confidence 44444432 2358999999999998874322111111 112222223211 35789999999999754321111
Q ss_pred -CHHHHHHHHHHhC-------------CcceEEE-eCCEEEEEEeCCCCCCCC------CCCCCHHHHHHHHHhhccC--
Q 010015 163 -KPEIVRRYEKEFG-------------KRNYRFT-VGKVEFIVVDAQTLDGHP------EGNLAAATWDFVKNVSIDF-- 219 (520)
Q Consensus 163 -~~~~~~rf~~~Fg-------------~~ny~~~-ig~~~fV~LDS~~l~g~~------~g~i~~~ql~wL~~ll~~~-- 219 (520)
.....+.+.+.|+ ..+|++. .++++||+|||....... ......+|++||++.+++.
T Consensus 132 ~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~ 211 (296)
T cd00842 132 SPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQ 211 (296)
T ss_pred cccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 0111122222221 2356777 799999999997543221 2234588999999977653
Q ss_pred CCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhC--CcEEEECCccCCCcEE
Q 010015 220 QLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIK--PVLVLSGHDHDQCTVS 297 (520)
Q Consensus 220 ~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~--p~lVfsGH~H~~c~~~ 297 (520)
++.+++|++|+|+.... |... + ...+....|++.++ ..++|+||+|......
T Consensus 212 ~~~~v~I~~HiPp~~~~---~~~~---~--------------------~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~ 265 (296)
T cd00842 212 AGEKVWIIGHIPPGVNS---YDTL---E--------------------NWSERYLQIINRYSDTIAGQFFGHTHRDEFRV 265 (296)
T ss_pred CCCeEEEEeccCCCCcc---cccc---h--------------------HHHHHHHHHHHHHHHhhheeeecccccceEEE
Confidence 35779999999997632 1100 0 00122345666665 3689999999876655
Q ss_pred eccC----CCCeEEEEeCceeecCCCCCCcEE
Q 010015 298 HESN----HEHIKEHTVGTISWQQGNLYPSFR 325 (520)
Q Consensus 298 h~~~----~~~i~Eitv~S~S~~~g~~~Pgf~ 325 (520)
.... ......+..||++-..++ +|||+
T Consensus 266 ~~~~~~~~~~~~~~~~~psitp~~~~-nP~~r 296 (296)
T cd00842 266 FYDDNDTGEPINVALIAPSVTPYSGN-NPGFR 296 (296)
T ss_pred EeCCCCCCCceEEEEecCccCcCCCC-CCCCC
Confidence 4322 235678889999977776 79985
No 17
>PLN02533 probable purple acid phosphatase
Probab=99.78 E-value=1.1e-17 Score=178.88 Aligned_cols=209 Identities=21% Similarity=0.220 Sum_probs=125.8
Q ss_pred CCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHH
Q 010015 47 VDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLN 126 (520)
Q Consensus 47 ~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~ 126 (520)
...+++|++++|.|... .. ++.+.. +...+||+|+++|||++.+. ....|..
T Consensus 136 ~~~~~~f~v~GDlG~~~---~~-------------------~~tl~~-i~~~~pD~vl~~GDl~y~~~--~~~~wd~--- 187 (427)
T PLN02533 136 SKFPIKFAVSGDLGTSE---WT-------------------KSTLEH-VSKWDYDVFILPGDLSYANF--YQPLWDT--- 187 (427)
T ss_pred CCCCeEEEEEEeCCCCc---cc-------------------HHHHHH-HHhcCCCEEEEcCccccccc--hHHHHHH---
Confidence 34689999999987421 10 011112 23458999999999997652 2334544
Q ss_pred HHHHHhccccCCCCCCceEEEccCCCCCCccccc--CCCHHHHHHHHHHh---C---CcceEEEeCCEEEEEEeCCCCCC
Q 010015 127 RFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALL--SHKPEIVRRYEKEF---G---KRNYRFTVGKVEFIVVDAQTLDG 198 (520)
Q Consensus 127 Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~--~~~~~~~~rf~~~F---g---~~ny~~~ig~~~fV~LDS~~l~g 198 (520)
|.+.+..- ...+|+++++||||....... ........+|..-+ | ..+|+|++|+++||+|||.. +
T Consensus 188 -f~~~i~~l----~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~-~- 260 (427)
T PLN02533 188 -FGRLVQPL----ASQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYT-D- 260 (427)
T ss_pred -HHHHhhhH----hhcCceEEeCccccccccccccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCc-c-
Confidence 33222211 246899999999998642100 00011123333222 1 24689999999999999952 1
Q ss_pred CCCCCCCHHHHHHHHHhhccCC--CCC-eEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHH
Q 010015 199 HPEGNLAAATWDFVKNVSIDFQ--LLP-RVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNR 275 (520)
Q Consensus 199 ~~~g~i~~~ql~wL~~ll~~~~--~~p-~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~ 275 (520)
.....+|++||++.+++.. ..| +|++.|+|+|.......+ + + . .....+....
T Consensus 261 ---~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~---~---------------~--~-~~~~r~~le~ 316 (427)
T PLN02533 261 ---FEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQG---E---------------K--E-SVGMKESMET 316 (427)
T ss_pred ---ccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCC---c---------------c--h-hHHHHHHHHH
Confidence 1236789999999765432 334 889999999964210000 0 0 0 0001234567
Q ss_pred HHHHhCCcEEEECCccCCCcEEecc----CCCCeEEEEeCcee
Q 010015 276 LLDLIKPVLVLSGHDHDQCTVSHES----NHEHIKEHTVGTIS 314 (520)
Q Consensus 276 LL~~l~p~lVfsGH~H~~c~~~h~~----~~~~i~Eitv~S~S 314 (520)
|++..+++++||||+|.|.+....+ ...+...+++|+-.
T Consensus 317 Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG 359 (427)
T PLN02533 317 LLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGG 359 (427)
T ss_pred HHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCc
Confidence 8888899999999999987643211 12456678777754
No 18
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.75 E-value=4.6e-16 Score=165.10 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=93.5
Q ss_pred cceEEE-eCCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhc
Q 010015 177 RNYRFT-VGKVEFIVVDAQTLDGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVR 255 (520)
Q Consensus 177 ~ny~~~-ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~ 255 (520)
.+|+|+ .++++||+|||....+...|.+.++|++||++.+++.+++++||++|||++..... ..+ +..
T Consensus 292 ~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~---~~D--p~~------ 360 (496)
T TIGR03767 292 GYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNE---LTD--PVD------ 360 (496)
T ss_pred ceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCCCCCEEEEECCCCcccccc---ccc--ccc------
Confidence 479999 89999999999754467788999999999999888777889999999999874211 000 000
Q ss_pred cCCCccchhccccCHHHHHHHHHHhC----CcEEEECCccCCCcEEecc-----CCCCeEEEEeCceeecCCCCCC-cEE
Q 010015 256 TGHSQEILYQNYITEESSNRLLDLIK----PVLVLSGHDHDQCTVSHES-----NHEHIKEHTVGTISWQQGNLYP-SFR 325 (520)
Q Consensus 256 ~~~~~g~~yqn~ls~e~s~~LL~~l~----p~lVfsGH~H~~c~~~h~~-----~~~~i~Eitv~S~S~~~g~~~P-gf~ 325 (520)
.+... . +.++|++.++ ..+|||||+|......|.. ++.++.||+++|.- ..| =|+
T Consensus 361 ----pg~~~---~---n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlv-----dfPq~~R 425 (496)
T TIGR03767 361 ----PGEKR---H---LGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHI-----DFPQQGR 425 (496)
T ss_pred ----ccccc---c---CHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccc-----cCCCCce
Confidence 00001 1 2344555553 3689999999987666642 23488999999853 234 799
Q ss_pred EEEEEcCCc
Q 010015 326 LLSASNSAL 334 (520)
Q Consensus 326 llsl~~~~~ 334 (520)
++++..+.+
T Consensus 426 i~Ei~~n~d 434 (496)
T TIGR03767 426 IIELADNQD 434 (496)
T ss_pred EEEEEeCCC
Confidence 999987753
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.74 E-value=1.5e-16 Score=150.03 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=98.5
Q ss_pred CCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHH-HHh
Q 010015 96 LPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYE-KEF 174 (520)
Q Consensus 96 ~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~-~~F 174 (520)
...+||+||++||+++.+ +.+++. ++ +.+. ..+.|+++++||||.... .+.+. ..+
T Consensus 20 ~~~~~D~vv~~GDl~~~~---~~~~~~----~~-~~l~------~~~~p~~~v~GNHD~~~~---------~~~~~~~~~ 76 (188)
T cd07392 20 KAEEADAVIVAGDITNFG---GKEAAV----EI-NLLL------AIGVPVLAVPGNCDTPEI---------LGLLTSAGL 76 (188)
T ss_pred hccCCCEEEECCCccCcC---CHHHHH----HH-HHHH------hcCCCEEEEcCCCCCHHH---------HHhhhcCcE
Confidence 456899999999999987 443332 23 3333 367899999999995211 11111 011
Q ss_pred CCcceEEEeCCEEEEEEeCCC-CCCCCCCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCC-CCCCCCCCCCCcccchh
Q 010015 175 GKRNYRFTVGKVEFIVVDAQT-LDGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRR-DETPCGPHRSSPIINQR 252 (520)
Q Consensus 175 g~~ny~~~ig~~~fV~LDS~~-l~g~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~-~~~~Cg~~r~~~~~~~~ 252 (520)
...+..+.++++.|+++|+.. ......+.+.+++++|+ +.+.....++.|+++|+|++.. .+..+.
T Consensus 77 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~~~~~~ilv~H~pp~~~~~d~~~~----------- 144 (188)
T cd07392 77 NLHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNNLLAKNLILVTHAPPYGTAVDRVSG----------- 144 (188)
T ss_pred ecCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhccCCCCeEEEECCCCcCCcccccCC-----------
Confidence 122456778999999999742 22233456788899998 3333445688999999999863 110000
Q ss_pred hhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCCCcE
Q 010015 253 IVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTV 296 (520)
Q Consensus 253 ~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~c~~ 296 (520)
. .+ ...+...++++.++|+++||||+|.....
T Consensus 145 --------~---~~-~g~~~l~~li~~~~~~~~l~GH~H~~~~~ 176 (188)
T cd07392 145 --------G---FH-VGSKAIRKFIEERQPLLCICGHIHESRGV 176 (188)
T ss_pred --------C---Cc-cCCHHHHHHHHHhCCcEEEEeccccccce
Confidence 0 00 12234566778889999999999997543
No 20
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.72 E-value=2e-16 Score=156.59 Aligned_cols=202 Identities=16% Similarity=0.090 Sum_probs=115.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHH
Q 010015 52 KVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHI 131 (520)
Q Consensus 52 rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~i 131 (520)
||+++||+|+. ...+ ..+..+.+.+..+ ...+||+|+++|||++.. ++..+.++.+.+.
T Consensus 1 ki~~iSDlH~~-~~~~--------------~~~~~l~~~~~~~-~~~~~d~vv~~GDl~~~~-----~~~~~~~~~l~~~ 59 (239)
T TIGR03729 1 KIAFSSDLHID-LNHF--------------DTEEMLETLAQYL-KKQKIDHLHIAGDISNDF-----QRSLPFIEKLQEL 59 (239)
T ss_pred CEEEEEeecCC-CCCC--------------CHHHHHHHHHHHH-HhcCCCEEEECCccccch-----hhHHHHHHHHHHh
Confidence 58999999984 1111 0111234444333 345799999999999864 1111222222221
Q ss_pred hccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhC-----CcceEEEeCCEEEEEEeCCC-----------
Q 010015 132 FGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFG-----KRNYRFTVGKVEFIVVDAQT----------- 195 (520)
Q Consensus 132 f~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg-----~~ny~~~ig~~~fV~LDS~~----------- 195 (520)
...|+++++||||...+. .. +.+.+.++ .....+..++++|++++.-.
T Consensus 60 ---------~~~pv~~v~GNHD~~~~~----~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~ 123 (239)
T TIGR03729 60 ---------KGIKVTFNAGNHDMLKDL----TY---EEIESNDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSK 123 (239)
T ss_pred ---------cCCcEEEECCCCCCCCCC----CH---HHHHhccchhhhcccccccCCCceEEEeeccceecccccccCHH
Confidence 357999999999963121 11 11222221 11222334889999998310
Q ss_pred ---------------CCCCCCCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCC-CCCCCCCCCcccchhhhccCCC
Q 010015 196 ---------------LDGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDE-TPCGPHRSSPIINQRIVRTGHS 259 (520)
Q Consensus 196 ---------------l~g~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~-~~Cg~~r~~~~~~~~~~~~~~~ 259 (520)
..+...+.+.+++++||++.+.+..++++||++|+|+.+..- ..++.. .+
T Consensus 124 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~~~---~~----------- 189 (239)
T TIGR03729 124 EILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMDHR---RF----------- 189 (239)
T ss_pred HHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCCCc---ch-----------
Confidence 011112345678899999988777778999999999875311 011100 00
Q ss_pred ccchhcc-ccCHHHHHHHHHHhCCcEEEECCccCCCc-EEeccCCCCeEEEEeC
Q 010015 260 QEILYQN-YITEESSNRLLDLIKPVLVLSGHDHDQCT-VSHESNHEHIKEHTVG 311 (520)
Q Consensus 260 ~g~~yqn-~ls~e~s~~LL~~l~p~lVfsGH~H~~c~-~~h~~~~~~i~Eitv~ 311 (520)
...+ ....+...++++..++++++|||+|.... ... ++++.++++
T Consensus 190 ---~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i----~~~~~~~~~ 236 (239)
T TIGR03729 190 ---DMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTI----GGTTYHNRP 236 (239)
T ss_pred ---hhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEE----CCEEEEecC
Confidence 0011 12224455677777899999999999864 332 677777654
No 21
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.71 E-value=6.7e-16 Score=155.19 Aligned_cols=185 Identities=24% Similarity=0.285 Sum_probs=116.0
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKH 130 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~ 130 (520)
++|++|||+|+..... .++..+.+.+ +.++..+||+||++|||++.| .+.+|.. +++
T Consensus 1 ~~i~~isD~H~~~~~~---------------~~~~~~~~~~-~~i~~~~~D~~v~tGDl~~~~---~~~~~~~----~~~ 57 (301)
T COG1409 1 MRIAHISDLHLGALGV---------------DSEELLEALL-AAIEQLKPDLLVVTGDLTNDG---EPEEYRR----LKE 57 (301)
T ss_pred CeEEEEecCccccccc---------------chHHHHHHHH-HHHhcCCCCEEEEccCcCCCC---CHHHHHH----HHH
Confidence 4899999999974111 0111223333 334678899999999999997 5666554 444
Q ss_pred HhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEE---e-CCEEEEEEeCCCCCCCCCCCCCH
Q 010015 131 IFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFT---V-GKVEFIVVDAQTLDGHPEGNLAA 206 (520)
Q Consensus 131 if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~---i-g~~~fV~LDS~~l~g~~~g~i~~ 206 (520)
.+... ....|++++|||||..... ...|...+...+.... . ++++++++|+. ..+...|.+..
T Consensus 58 ~l~~~----~~~~~~~~vpGNHD~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~G~~~~ 124 (301)
T COG1409 58 LLARL----ELPAPVIVVPGNHDARVVN--------GEAFSDQFFNRYAVLVGACSSGGWRVIGLDSS-VPGVPLGRLGA 124 (301)
T ss_pred HHhhc----cCCCceEeeCCCCcCCchH--------HHHhhhhhcccCcceEeeccCCceEEEEecCC-CCCCCCCEECH
Confidence 43311 3678999999999975432 2334445544332222 2 67899999995 55666788999
Q ss_pred HHHHHHHHhhccCCCC---CeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhC--
Q 010015 207 ATWDFVKNVSIDFQLL---PRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIK-- 281 (520)
Q Consensus 207 ~ql~wL~~ll~~~~~~---p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~-- 281 (520)
.|++|+++.+...+.. ..|+++|+|+...... . .. ....+......++....
T Consensus 125 ~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~---~-~~-------------------~~l~~~~~~~~~~~~~~~~ 181 (301)
T COG1409 125 EQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTG---V-DR-------------------VALRDAGELLDVLIAHGND 181 (301)
T ss_pred HHHHHHHHHHHhCccccCceEEEecCCCCCCCCCc---c-ce-------------------eeeecchhHHHHHHhcCCc
Confidence 9999999977655443 3455555655542210 0 00 01112223444566666
Q ss_pred CcEEEECCccCCC
Q 010015 282 PVLVLSGHDHDQC 294 (520)
Q Consensus 282 p~lVfsGH~H~~c 294 (520)
.++||+||+|..+
T Consensus 182 v~~vl~GH~H~~~ 194 (301)
T COG1409 182 VRLVLSGHIHLAA 194 (301)
T ss_pred eEEEEeCcccccc
Confidence 7899999999984
No 22
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.71 E-value=4.8e-16 Score=162.54 Aligned_cols=234 Identities=16% Similarity=0.149 Sum_probs=144.3
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCC-CCHHHHHHHHH
Q 010015 48 DGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPY-LSDEEWQESLN 126 (520)
Q Consensus 48 ~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~-~s~~e~~~~~~ 126 (520)
+..+|++.++|.-- + ++. +.. ..+.+.......++|+|+.+||-+++|.. ..|+.|++
T Consensus 24 ~~~l~F~~vGDwG~-g--~~~-----------Q~~----VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~--- 82 (394)
T PTZ00422 24 KAQLRFASLGNWGT-G--SKQ-----------QKL----VASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKH--- 82 (394)
T ss_pred CCeEEEEEEecCCC-C--chh-----------HHH----HHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHh---
Confidence 35699999999872 1 111 111 13334444556799999999999977743 45666665
Q ss_pred HHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHH-----------H-------HHHHhCCc-ceEE----Ee
Q 010015 127 RFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVR-----------R-------YEKEFGKR-NYRF----TV 183 (520)
Q Consensus 127 Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~-----------r-------f~~~Fg~~-ny~~----~i 183 (520)
.|.+++..+.. .+++|+|.++||||...+...++... .. . +.+..-|. +|.+ ..
T Consensus 83 ~FE~vY~~~s~--~L~~Pwy~vLGNHDy~Gn~~AQi~r~-~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~ 159 (394)
T PTZ00422 83 CFENVYSEESG--DMQIPFFTVLGQADWDGNYNAELLKG-QNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTD 159 (394)
T ss_pred hHhhhccCcch--hhCCCeEEeCCcccccCCchhhhccc-cccccccccccccccccccccCCCccCCchhheeeeeeec
Confidence 47777765411 26799999999999743322222110 00 0 01111121 2322 22
Q ss_pred -------------CCEEEEEEeCCCCCCCC-CCCCCHHHHHHHHHhhc--cCCCCCeEEEEccCCCCCCCCCCCCCCCCc
Q 010015 184 -------------GKVEFIVVDAQTLDGHP-EGNLAAATWDFVKNVSI--DFQLLPRVLLTHIPLYRRDETPCGPHRSSP 247 (520)
Q Consensus 184 -------------g~~~fV~LDS~~l~g~~-~g~i~~~ql~wL~~ll~--~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~ 247 (520)
..+.|++|||..+.... .......+|+||++.+. ......+||+.|||+|... .+...+
T Consensus 160 ~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG-----~hg~~~ 234 (394)
T PTZ00422 160 TSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSG-----SSKGDS 234 (394)
T ss_pred ccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecC-----CCCCCH
Confidence 23799999997665322 23456789999999653 2235689999999999632 110000
Q ss_pred ccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCC---------
Q 010015 248 IINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQG--------- 318 (520)
Q Consensus 248 ~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g--------- 318 (520)
. |. ..-..||+..+.++++|||||.+..... +++..++.|+-|-..+
T Consensus 235 ~-------------------L~-~~L~PLL~ky~VdlYisGHDH~lq~i~~----~gt~yIvSGaGs~~~~~~~~~~~~s 290 (394)
T PTZ00422 235 Y-------------------LS-YYLLPLLKDAQVDLYISGYDRNMEVLTD----EGTAHINCGSGGNSGRKSIMKNSKS 290 (394)
T ss_pred H-------------------HH-HHHHHHHHHcCcCEEEEccccceEEecC----CCceEEEeCccccccCCCCCCCCCc
Confidence 0 10 1245577778889999999999876542 5788999888552211
Q ss_pred ---CCCCcEEEEEEEcCCc
Q 010015 319 ---NLYPSFRLLSASNSAL 334 (520)
Q Consensus 319 ---~~~Pgf~llsl~~~~~ 334 (520)
...+||..+++..+..
T Consensus 291 ~F~~~~~GF~~~~l~~~~l 309 (394)
T PTZ00422 291 LFYSEDIGFCIHELNAEGM 309 (394)
T ss_pred ceecCCCCEEEEEEecCEE
Confidence 1247899999887753
No 23
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.71 E-value=2.3e-16 Score=151.81 Aligned_cols=122 Identities=20% Similarity=0.172 Sum_probs=80.3
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHH
Q 010015 50 YDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFK 129 (520)
Q Consensus 50 ~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~ 129 (520)
.+|+++|||+|+........+. ..+....+.+..++...+||+||++||+++++...+ ..+ ..+.++.
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~-~~~-~~~~~~~ 69 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGC----------EADLKTVAFIERVLDAEKPDLVVLTGDLITGENTND-NST-SALDKAV 69 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcc----------hhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCch-HHH-HHHHHHH
Confidence 5899999999997643221000 011112333444556679999999999998774322 111 2222233
Q ss_pred HHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHH
Q 010015 130 HIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATW 209 (520)
Q Consensus 130 ~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql 209 (520)
+.+. ..++|+++++|||| ..+.+.++|+
T Consensus 70 ~~l~------~~~~p~~~~~GNHD----------------------------------------------~~g~l~~~ql 97 (199)
T cd07383 70 SPMI------DRKIPWAATFGNHD----------------------------------------------GYDWIRPSQI 97 (199)
T ss_pred HHHH------HcCCCEEEECccCC----------------------------------------------CCCCCCHHHH
Confidence 3332 24789999999999 2456788999
Q ss_pred HHHHHhhccC-----CCCCeEEEEccCCCCC
Q 010015 210 DFVKNVSIDF-----QLLPRVLLTHIPLYRR 235 (520)
Q Consensus 210 ~wL~~ll~~~-----~~~p~ILltH~PL~~~ 235 (520)
+||++.+.+. ...|.++|+|+|+...
T Consensus 98 ~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~ 128 (199)
T cd07383 98 EWFKETSAALKKKYGKPIPSLAFFHIPLPEY 128 (199)
T ss_pred HHHHHHHHHHhhccCCCCcceEEEecChHHH
Confidence 9999976543 4578999999998753
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.63 E-value=1.2e-14 Score=132.08 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=89.8
Q ss_pred EEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHh
Q 010015 53 VAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIF 132 (520)
Q Consensus 53 ilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if 132 (520)
++++||+|+....... . .. ....+.+.+. .+...+||+|+++||+++.+ ..++|.. +.+.+
T Consensus 1 il~isD~Hl~~~~~~~-----~----~~--~~~~l~~~~~-~~~~~~~d~vi~~GDl~~~~---~~~~~~~----~~~~~ 61 (144)
T cd07400 1 ILHLSDLHFGPERKPE-----L----LA--LLSLLDRLLA-EIKALDPDLVVITGDLTQRG---LPEEFEE----AREFL 61 (144)
T ss_pred CeEeCccCCCCCcchh-----H----HH--HHHHHHHHHH-HHhccCCCEEEECCCCCCCC---CHHHHHH----HHHHH
Confidence 5899999997643221 0 00 0001333433 34567899999999999988 4555544 33333
Q ss_pred ccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHHHH
Q 010015 133 GLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWDFV 212 (520)
Q Consensus 133 ~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL 212 (520)
.... ....|++.++||||.
T Consensus 62 ~~l~---~~~~~~~~v~GNHD~---------------------------------------------------------- 80 (144)
T cd07400 62 DALP---APLEPVLVVPGNHDV---------------------------------------------------------- 80 (144)
T ss_pred HHcc---ccCCcEEEeCCCCeE----------------------------------------------------------
Confidence 3110 112599999999995
Q ss_pred HHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccC
Q 010015 213 KNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHD 292 (520)
Q Consensus 213 ~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~ 292 (520)
|+++|+|++...... . .+. ...+...++++..++++++|||+|.
T Consensus 81 ------------iv~~Hhp~~~~~~~~-~----------------------~~~-~~~~~~~~~l~~~~~~~~l~GH~H~ 124 (144)
T cd07400 81 ------------IVVLHHPLVPPPGSG-R----------------------ERL-LDAGDALKLLAEAGVDLVLHGHKHV 124 (144)
T ss_pred ------------EEEecCCCCCCCccc-c----------------------ccC-CCHHHHHHHHHHcCCCEEEECCCCC
Confidence 999999998753210 0 000 1233455566667889999999999
Q ss_pred CCcEEeccCCCCeEEEEeCc
Q 010015 293 QCTVSHESNHEHIKEHTVGT 312 (520)
Q Consensus 293 ~c~~~h~~~~~~i~Eitv~S 312 (520)
..........+++..++.||
T Consensus 125 ~~~~~~~~~~~~~~~~~aGs 144 (144)
T cd07400 125 PYVGNISNAGGGLVVIGAGT 144 (144)
T ss_pred cCeeeccCCCCCEEEEecCC
Confidence 88766543335666666654
No 25
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.63 E-value=9.2e-14 Score=136.34 Aligned_cols=197 Identities=17% Similarity=0.246 Sum_probs=117.2
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHH
Q 010015 49 GYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRF 128 (520)
Q Consensus 49 ~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf 128 (520)
.+-|++++||+|= .. . .+++.+. ..+..+||.||++||+++.+. ..+++.+ +
T Consensus 3 ~~~kIl~iSDiHg----n~-----------~------~le~l~~-~~~~~~~D~vv~~GDl~~~g~--~~~~~~~----~ 54 (224)
T cd07388 3 TVRYVLATSNPKG----DL-----------E------ALEKLVG-LAPETGADAIVLIGNLLPKAA--KSEDYAA----F 54 (224)
T ss_pred ceeEEEEEEecCC----CH-----------H------HHHHHHH-HHhhcCCCEEEECCCCCCCCC--CHHHHHH----H
Confidence 4678999999992 11 0 1233332 234468999999999999762 2344443 4
Q ss_pred HHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhC------C----cceEEEe-CCEEEEEEeCCCCC
Q 010015 129 KHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFG------K----RNYRFTV-GKVEFIVVDAQTLD 197 (520)
Q Consensus 129 ~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg------~----~ny~~~i-g~~~fV~LDS~~l~ 197 (520)
.+.+. ....|+++++||||-.. .+...+.|+ . ......+ |++.|++++... .
T Consensus 55 l~~l~------~l~~pv~~V~GNhD~~v----------~~~l~~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~-~ 117 (224)
T cd07388 55 FRILG------EAHLPTFYVPGPQDAPL----------WEYLREAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEI-A 117 (224)
T ss_pred HHHHH------hcCCceEEEcCCCChHH----------HHHHHHHhcccccCccceecCCCeEEecCCeEEEEecCCc-C
Confidence 44443 35679999999999421 112222332 1 1113444 569999999642 2
Q ss_pred CCCCCCCCHHHH----HHHHH----hhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccC
Q 010015 198 GHPEGNLAAATW----DFVKN----VSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYIT 269 (520)
Q Consensus 198 g~~~g~i~~~ql----~wL~~----ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls 269 (520)
. ....++++. +|+.+ .+......+.||++|.|++.... + + ..
T Consensus 118 ~--~~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~---~-h------------------------~G 167 (224)
T cd07388 118 D--EGEPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGL---N-E------------------------QG 167 (224)
T ss_pred C--CCCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCC---C-c------------------------cC
Confidence 1 234566652 34322 22223467899999999987421 0 1 12
Q ss_pred HHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEc
Q 010015 270 EESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASN 331 (520)
Q Consensus 270 ~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~ 331 (520)
.....++++.++|.+++|||+|...+ .-+.+.-++.|+++ .| .|.++.+..
T Consensus 168 S~alr~~I~~~~P~l~i~GHih~~~~-----~~g~t~vvNpg~~~--~g----~~a~i~~~~ 218 (224)
T cd07388 168 SHEVAHLIKTHNPLVVLVGGKGQKHE-----LLGASWVVVPGDLS--EG----RYALLDLRA 218 (224)
T ss_pred HHHHHHHHHHhCCCEEEEcCCceeEE-----EeCCEEEECCCccc--CC----cEEEEEecC
Confidence 24466789999999999999993221 12556666666643 22 577888753
No 26
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.62 E-value=4.3e-16 Score=139.96 Aligned_cols=187 Identities=25% Similarity=0.256 Sum_probs=94.3
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKH 130 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~ 130 (520)
+||+++||+|+..... . . ..+.+.......+||+||++||+++++ ...+..........
T Consensus 1 ~ri~~isD~H~~~~~~------------~----~--~~~~~~~~~~~~~~d~ii~~GD~~~~~---~~~~~~~~~~~~~~ 59 (200)
T PF00149_consen 1 MRILVISDLHGGYDDD------------S----D--AFRKLDEIAAENKPDFIIFLGDLVDGG---NPSEEWRAQFWFFI 59 (200)
T ss_dssp EEEEEEEBBTTTHHHH------------C----H--HHHHHHHHHHHTTTSEEEEESTSSSSS---SHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCCcch------------h----H--HHHHHHHHhccCCCCEEEeeccccccc---cccccchhhhccch
Confidence 6999999999852110 0 0 122222344567899999999999988 33332221110011
Q ss_pred HhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHh----CCcceEEE---------eCCEEEEEEeCCCCC
Q 010015 131 IFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEF----GKRNYRFT---------VGKVEFIVVDAQTLD 197 (520)
Q Consensus 131 if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~F----g~~ny~~~---------ig~~~fV~LDS~~l~ 197 (520)
... ....|++.++||||...... ......... ...++... ..+......+.. .
T Consensus 60 ~~~------~~~~~~~~~~GNHD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 125 (200)
T PF00149_consen 60 RLL------NPKIPVYFILGNHDYYSGNS------FYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNE--Y 125 (200)
T ss_dssp HHH------HTTTTEEEEE-TTSSHHHHH------HHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCH--T
T ss_pred hhh------hccccccccccccccceecc------ccccccccccccccccccccccCcceeeeccccccccccccc--c
Confidence 111 36789999999999754321 001111111 11121111 111111111111 0
Q ss_pred CCCCCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHH
Q 010015 198 GHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLL 277 (520)
Q Consensus 198 g~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL 277 (520)
..........++.|+..........++|+++|+|++......+.. .......+....++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 184 (200)
T PF00149_consen 126 PDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSY---------------------GNESKGREALEELL 184 (200)
T ss_dssp HHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSSTTSSSTHHH---------------------SSEEEHHHHHHHHH
T ss_pred cccccccchhcccccccccccccccceeEEEecCCCCcccccccc---------------------chhhccHHHHHHHH
Confidence 000111122333444334444457889999999999754321100 00011224456677
Q ss_pred HHhCCcEEEECCccCC
Q 010015 278 DLIKPVLVLSGHDHDQ 293 (520)
Q Consensus 278 ~~l~p~lVfsGH~H~~ 293 (520)
...+++++|+||+|.|
T Consensus 185 ~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 185 KKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHTTCSEEEEESSSSE
T ss_pred hhCCCCEEEeCceecC
Confidence 7788899999999974
No 27
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.8e-14 Score=151.35 Aligned_cols=195 Identities=19% Similarity=0.224 Sum_probs=125.2
Q ss_pred CCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHH
Q 010015 47 VDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLN 126 (520)
Q Consensus 47 ~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~ 126 (520)
+..+.++++++|.-...... + ... ......+||+||+.|||...-...+ +.|++ +-
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~------s----~~~------------~~~~~~k~d~vlhiGDlsYa~~~~n-~~wD~-f~ 199 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYT------S----TLR------------NQEENLKPDAVLHIGDLSYAMGYSN-WQWDE-FG 199 (452)
T ss_pred ccCceeEEEEcccccccccc------c----hHh------------HHhcccCCcEEEEecchhhcCCCCc-cchHH-HH
Confidence 44789999999997753221 0 001 1112338999999999995443222 34554 23
Q ss_pred HHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhC------CcceEEEeCCEEEEEEeCCCCCCCC
Q 010015 127 RFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFG------KRNYRFTVGKVEFIVVDAQTLDGHP 200 (520)
Q Consensus 127 Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg------~~ny~~~ig~~~fV~LDS~~l~g~~ 200 (520)
|+-+-+ ...+|++++.||||+.+...... .....||..-+. +..|+|++|+++||+|+|....
T Consensus 200 r~vEp~-------As~vPymv~~GNHE~d~~~~~~F-~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~--- 268 (452)
T KOG1378|consen 200 RQVEPI-------ASYVPYMVCSGNHEIDWPPQPCF-VPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYY--- 268 (452)
T ss_pred hhhhhh-------hccCceEEecccccccCCCcccc-cccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccc---
Confidence 333333 36789999999999987642111 112344443222 1368999999999999997554
Q ss_pred CCCCCHHHHHHHHHhhc-cCCC--CCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHH
Q 010015 201 EGNLAAATWDFVKNVSI-DFQL--LPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLL 277 (520)
Q Consensus 201 ~g~i~~~ql~wL~~ll~-~~~~--~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL 277 (520)
+.....+|.+||++.++ .++. .++|++.|.|+|...... -.|++.. ....+.-+.||
T Consensus 269 ~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~--~~reG~~------------------~~~~~~LE~l~ 328 (452)
T KOG1378|consen 269 NFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDA--HYREGEF------------------ESMREGLEPLF 328 (452)
T ss_pred cccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCch--hhccCcc------------------hhhHHHHHHHH
Confidence 33457789999999554 3443 559999999999754310 1111100 01123567788
Q ss_pred HHhCCcEEEECCccCCCcE
Q 010015 278 DLIKPVLVLSGHDHDQCTV 296 (520)
Q Consensus 278 ~~l~p~lVfsGH~H~~c~~ 296 (520)
-..+.++||.||.|.|.+.
T Consensus 329 ~~~~VDvvf~GHvH~YER~ 347 (452)
T KOG1378|consen 329 VKYKVDVVFWGHVHRYERF 347 (452)
T ss_pred HHhceeEEEeccceehhcc
Confidence 8899999999999999764
No 28
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.54 E-value=5.7e-14 Score=141.93 Aligned_cols=80 Identities=23% Similarity=0.149 Sum_probs=49.3
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHH
Q 010015 48 DGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNR 127 (520)
Q Consensus 48 ~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~R 127 (520)
.+++|++++||+|+... .+ . ..+++.++ .++..+||+|+++||++|.+.....+++.+.+++
T Consensus 47 ~~~~rI~~lSDlH~~~~--~~-----~----------~~l~~~v~-~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~ 108 (271)
T PRK11340 47 AAPFKILFLADLHYSRF--VP-----L----------SLISDAIA-LGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSP 108 (271)
T ss_pred CCCcEEEEEcccCCCCc--CC-----H----------HHHHHHHH-HHHhcCCCEEEEccCcCCCCccccHHHHHHHHHH
Confidence 35699999999998522 11 0 01333333 2456799999999999984321122233332222
Q ss_pred HHHHhccccCCCCCCceEEEccCCCCCCc
Q 010015 128 FKHIFGLKSQDRFRDIRVHFLPGNHDNGY 156 (520)
Q Consensus 128 f~~if~~~~~~~~~~iPv~~vpGNHDig~ 156 (520)
+. ...|+|+|+||||...
T Consensus 109 L~-----------~~~pv~~V~GNHD~~~ 126 (271)
T PRK11340 109 LA-----------ECAPTFACFGNHDRPV 126 (271)
T ss_pred Hh-----------hcCCEEEecCCCCccc
Confidence 21 2368999999999743
No 29
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=9.7e-14 Score=135.77 Aligned_cols=253 Identities=20% Similarity=0.180 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHhhcceEEEEecccCcccCCCCCCCCCCCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHH
Q 010015 7 KLTLFLCLTWTITLLYGEMVAFWIPTLRSCTWPSSSSMDGVDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLY 86 (520)
Q Consensus 7 ~~~~~l~~~w~~~~~~~E~~~~~~~~~~~C~W~~~~~~~~~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~ 86 (520)
+.+.+|..+|.+.++.. +....-.-|......++++.+++++|+|.-..+ ++ .....
T Consensus 7 ~~~~~~~~i~t~f~I~~-------~~~s~~eLp~l~~p~~~dgslsflvvGDwGr~g--~~-------nqs~v------- 63 (336)
T KOG2679|consen 7 KPFSLLFGILTIFFILS-------AISSTAELPRLYDPAKSDGSLSFLVVGDWGRRG--SF-------NQSQV------- 63 (336)
T ss_pred cceeehHHHHHHHHHhh-------ccchhhhhhhhcCCCCCCCceEEEEEcccccCC--ch-------hHHHH-------
Confidence 34555666666666653 111122233322334456889999999997432 22 11111
Q ss_pred HHHHHHHhhCCCCCCEEEEcCCcC-CCCC-CCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCH
Q 010015 87 MRRAFFASILPFKPDVILFLGDHF-DGGP-YLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKP 164 (520)
Q Consensus 87 l~r~~~~~~~~~~PD~VI~lGDL~-d~G~-~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~ 164 (520)
......+.+.++.|+|+-+||-+ |+|. ...|+.|++ +|..|+..+ .+++|+|.|.||||...+...++++
T Consensus 64 -a~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~---sF~nIYT~p----SLQkpWy~vlGNHDyrGnV~AQls~ 135 (336)
T KOG2679|consen 64 -ALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQD---SFENIYTAP----SLQKPWYSVLGNHDYRGNVEAQLSP 135 (336)
T ss_pred -HHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHh---hhhhcccCc----ccccchhhhccCccccCchhhhhhH
Confidence 11112234678999999999988 3443 234555554 688888876 5788999999999975443333332
Q ss_pred HHHHHHHHHhCCcceEEEe-------CCEEEEEEeCCCCCCCC----CC-----CCCHHHHHHHHHhhccCCCCCeEEEE
Q 010015 165 EIVRRYEKEFGKRNYRFTV-------GKVEFIVVDAQTLDGHP----EG-----NLAAATWDFVKNVSIDFQLLPRVLLT 228 (520)
Q Consensus 165 ~~~~rf~~~Fg~~ny~~~i-------g~~~fV~LDS~~l~g~~----~g-----~i~~~ql~wL~~ll~~~~~~p~ILlt 228 (520)
-..+-=.+.+-+..|.... -+.++.++|+..+..+. .+ .+...++.||+..+++...+.+|+..
T Consensus 136 ~l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S~a~wkiVvG 215 (336)
T KOG2679|consen 136 VLRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKASRAKWKIVVG 215 (336)
T ss_pred HHHhhccceecccHHhhcceeeeeeccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHHhhcceEEEec
Confidence 1111111111222221111 13344445554433221 11 23456788999988888899999999
Q ss_pred ccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEE
Q 010015 229 HIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEH 308 (520)
Q Consensus 229 H~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Ei 308 (520)
|||+..... -|+ . ..| .+.-..||+..+.++.++||||--.... .+..+|..+
T Consensus 216 Hh~i~S~~~--HG~-----T-----------------~eL-~~~LlPiL~~n~VdlY~nGHDHcLQhis--~~e~~iqf~ 268 (336)
T KOG2679|consen 216 HHPIKSAGH--HGP-----T-----------------KEL-EKQLLPILEANGVDLYINGHDHCLQHIS--SPESGIQFV 268 (336)
T ss_pred ccceehhhc--cCC-----h-----------------HHH-HHHHHHHHHhcCCcEEEecchhhhhhcc--CCCCCeeEE
Confidence 999976421 111 0 001 0123346777778999999999755443 234788899
Q ss_pred EeCcee--ecC
Q 010015 309 TVGTIS--WQQ 317 (520)
Q Consensus 309 tv~S~S--~~~ 317 (520)
|.|+-| |+-
T Consensus 269 tSGagSkaw~g 279 (336)
T KOG2679|consen 269 TSGAGSKAWRG 279 (336)
T ss_pred eeCCcccccCC
Confidence 987665 554
No 30
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.52 E-value=1.5e-12 Score=137.32 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=82.7
Q ss_pred ceEEE-eCCE--EEEEEeCCCCC------CCCCCCCCHHHHHHHHHhhccCC-CCCeEEEEccCCCCCCCCCCCCCCCCc
Q 010015 178 NYRFT-VGKV--EFIVVDAQTLD------GHPEGNLAAATWDFVKNVSIDFQ-LLPRVLLTHIPLYRRDETPCGPHRSSP 247 (520)
Q Consensus 178 ny~~~-ig~~--~fV~LDS~~l~------g~~~g~i~~~ql~wL~~ll~~~~-~~p~ILltH~PL~~~~~~~Cg~~r~~~ 247 (520)
+|+|+ .|++ +||+||+..+. |.+.|.++++|++||++.+...+ +.|++|++|||+....+..+. .+
T Consensus 294 yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a~~p~VVV~hHpPi~t~gi~~m--d~-- 369 (492)
T TIGR03768 294 CYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQADGQLMIIAAHIPIAVSPIGSE--ME-- 369 (492)
T ss_pred eeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcCCCceEEEEeCCCcccCCccch--hh--
Confidence 78999 5856 99999997544 44567899999999999877654 667555555544442111111 00
Q ss_pred ccchhhhccCCCccchhccccCHHHHHHHHHHhC----CcEEEECCccCCCcEEeccC-----CCCeEEEEeCceeecCC
Q 010015 248 IINQRIVRTGHSQEILYQNYITEESSNRLLDLIK----PVLVLSGHDHDQCTVSHESN-----HEHIKEHTVGTISWQQG 318 (520)
Q Consensus 248 ~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~----p~lVfsGH~H~~c~~~h~~~-----~~~i~Eitv~S~S~~~g 318 (520)
+. .......-..+|..+ ..+|++.++ ..++||||.|.....-|... ..+.-|+++.|.-
T Consensus 370 w~-----~~~~~~~~~L~n~~~---~~eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaSl~---- 437 (492)
T TIGR03768 370 WW-----LGAADANPDLQNAVS---LTGLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETASLR---- 437 (492)
T ss_pred hc-----ccccccccccccccc---HHHHHHHHhcCCCeEEEEcCCcccccccccCCCCCCCCcCceEEEeehhhc----
Confidence 00 000000000122121 234555553 26799999998776655432 2477888877753
Q ss_pred CCCC-cEEEEEEEcCCc
Q 010015 319 NLYP-SFRLLSASNSAL 334 (520)
Q Consensus 319 ~~~P-gf~llsl~~~~~ 334 (520)
.-| =||++++..+.+
T Consensus 438 -DfPQq~R~~Ei~~n~d 453 (492)
T TIGR03768 438 -DFPQQFRTFEIYLNSD 453 (492)
T ss_pred -cchhhceEEEEEeCCC
Confidence 123 588999887753
No 31
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.51 E-value=2.3e-12 Score=130.09 Aligned_cols=250 Identities=18% Similarity=0.189 Sum_probs=129.6
Q ss_pred CCCceEEEEEeCCCCCCCCCCCCCCchhHH--HHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHH
Q 010015 47 VDGYDKVAVIADPQIMDKTSLHLPPKSLAL--EVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQES 124 (520)
Q Consensus 47 ~~~~~rilvISDpHL~~~~~~~~~~~~l~~--~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~ 124 (520)
..++||++++||+|++-...-+........ .-+...+..+|.| .+...+||+|+++||++++. . -.....
T Consensus 50 ~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~r----vL~sE~PDlVVfTGD~i~g~-~--t~Da~~- 121 (379)
T KOG1432|consen 50 EDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSR----VLASEKPDLVVFTGDNIFGH-S--TQDAAT- 121 (379)
T ss_pred CCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHH----HHhccCCCEEEEeCCccccc-c--cHhHHH-
Confidence 467899999999999754221111111111 0012233344444 45678999999999999873 2 222222
Q ss_pred HHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHH------------------HhCCcceEEEeC--
Q 010015 125 LNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEK------------------EFGKRNYRFTVG-- 184 (520)
Q Consensus 125 ~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~------------------~Fg~~ny~~~ig-- 184 (520)
-+.+.+.+. +..++|+..+.||||-... ....-+..|.. ..|..||...+-
T Consensus 122 --sl~kAvaP~---I~~~IPwA~~lGNHDdes~----ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~ 192 (379)
T KOG1432|consen 122 --SLMKAVAPA---IDRKIPWAAVLGNHDDESD----LTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGA 192 (379)
T ss_pred --HHHHHhhhH---hhcCCCeEEEecccccccc----cCHHHHHHHHhcCCCccccCCCcccceeeeecccceEEEeccC
Confidence 233333321 1478999999999995432 22222222221 112223332221
Q ss_pred ---------CEEEEEEeCCCCCCC-----CCCCCCHHHHHHHHHhhcc-------CCCCCeEEEEccCCCCCCCCCCCCC
Q 010015 185 ---------KVEFIVVDAQTLDGH-----PEGNLAAATWDFVKNVSID-------FQLLPRVLLTHIPLYRRDETPCGPH 243 (520)
Q Consensus 185 ---------~~~fV~LDS~~l~g~-----~~g~i~~~ql~wL~~ll~~-------~~~~p~ILltH~PL~~~~~~~Cg~~ 243 (520)
--.+++||+...... ....+.+.|+.||+....+ ....|-+.+-|+|+-........
T Consensus 193 ~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~-- 270 (379)
T KOG1432|consen 193 IDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESK-- 270 (379)
T ss_pred CCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCC--
Confidence 135678887654322 2356889999999985521 11237899999999653211000
Q ss_pred CCCcccchhhhccCCCccchhccc-c----CHHHHHHHHHHhCCcEEEECCccC--CCcEEeccCCCCeEEEEeCceee-
Q 010015 244 RSSPIINQRIVRTGHSQEILYQNY-I----TEESSNRLLDLIKPVLVLSGHDHD--QCTVSHESNHEHIKEHTVGTISW- 315 (520)
Q Consensus 244 r~~~~~~~~~~~~~~~~g~~yqn~-l----s~e~s~~LL~~l~p~lVfsGH~H~--~c~~~h~~~~~~i~Eitv~S~S~- 315 (520)
.|.+ ..+|.. . .....+.|-+....++|||||+|- .|-..+ +.+...--|++..
T Consensus 271 --tp~~------------g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k----~~~wlCygGgaGyg 332 (379)
T KOG1432|consen 271 --TPLI------------GVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGELK----GELWLCYGGGAGYG 332 (379)
T ss_pred --Cccc------------ceeeccccccccccHHHHHHHhccCcceEEeccccccceecccC----CeEEEEecCCCccC
Confidence 0110 011111 1 111122233355679999999994 455433 2233333344442
Q ss_pred --cCCCCCCcEEEEEEEcCC
Q 010015 316 --QQGNLYPSFRLLSASNSA 333 (520)
Q Consensus 316 --~~g~~~Pgf~llsl~~~~ 333 (520)
..+.-.++-|+++++...
T Consensus 333 gYg~~gw~Rr~Rv~e~d~~~ 352 (379)
T KOG1432|consen 333 GYGIGGWERRARVFELDLNK 352 (379)
T ss_pred CcCcCCcccceEEEEccccc
Confidence 112235677888886653
No 32
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.49 E-value=2.8e-13 Score=131.34 Aligned_cols=159 Identities=13% Similarity=-0.068 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHH
Q 010015 52 KVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHI 131 (520)
Q Consensus 52 rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~i 131 (520)
||+++||+||+.......+. .. ... .-..+.+.++. +...+||+|+++||+++... .+.+++....+.+.++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~-~~---~~~--~~~~~~~~~~~-~~~~~~d~i~~~GD~~~~~~-~~~~~~~~~~~~~~~~ 72 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRD-RR---RED--QFEAFEEIVEL-AIEEKVDFVLIAGDLFDSNN-PSPEALELLIEALRRL 72 (223)
T ss_pred CeEEeccccCCccccCcCcc-cc---hHH--HHHHHHHHHHH-HHhcCCCEEEECCcccCCCC-CCHHHHHHHHHHHHHH
Confidence 68999999998543321110 00 000 00113333333 34568999999999998764 2344444433334333
Q ss_pred hccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhC-----Ccc--eE--EEeCCEEEEEEeCCCCCCCCCC
Q 010015 132 FGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFG-----KRN--YR--FTVGKVEFIVVDAQTLDGHPEG 202 (520)
Q Consensus 132 f~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg-----~~n--y~--~~ig~~~fV~LDS~~l~g~~~g 202 (520)
. ..++|+++++||||........ . ....+...+. ... .. +..+++.|++++....
T Consensus 73 ~-------~~~~~v~~~~GNHD~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~------ 136 (223)
T cd00840 73 K-------EAGIPVFIIAGNHDSPSRLGAL--S-PLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRR------ 136 (223)
T ss_pred H-------HCCCCEEEecCCCCCccccccc--c-chHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCH------
Confidence 2 1468999999999975432110 0 0111111110 000 11 2234566777765310
Q ss_pred CCCHHHHHHHHH-hhccCCCCCeEEEEccCCCC
Q 010015 203 NLAAATWDFVKN-VSIDFQLLPRVLLTHIPLYR 234 (520)
Q Consensus 203 ~i~~~ql~wL~~-ll~~~~~~p~ILltH~PL~~ 234 (520)
.......+++++ .....++.+.|+++|.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~Il~~H~~~~~ 169 (223)
T cd00840 137 SRLRDLLADAELRPRPLDPDDFNILLLHGGVAG 169 (223)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEeeeeec
Confidence 111222222222 23344578899999999865
No 33
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.45 E-value=1.1e-12 Score=122.36 Aligned_cols=138 Identities=15% Similarity=0.072 Sum_probs=76.7
Q ss_pred hCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHh
Q 010015 95 ILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEF 174 (520)
Q Consensus 95 ~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~F 174 (520)
....+||+|+++||+++.+ ...++.. +.... ....|+++++||||..
T Consensus 22 ~~~~~~d~li~~GDi~~~~---~~~~~~~----~~~~~-------~~~~~v~~v~GNHD~~------------------- 68 (166)
T cd07404 22 PIAPDADILVLAGDIGYLT---DAPRFAP----LLLAL-------KGFEPVIYVPGNHEFY------------------- 68 (166)
T ss_pred CCCCCCCEEEECCCCCCCc---chHHHHH----HHHhh-------cCCccEEEeCCCcceE-------------------
Confidence 3567899999999999876 2333222 12221 3567999999999952
Q ss_pred CCcceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhh
Q 010015 175 GKRNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIV 254 (520)
Q Consensus 175 g~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~ 254 (520)
+.|++..- -.+. .....+. ++..... -.+++||++|+|++... +...+..
T Consensus 69 -----------~~~~G~~~---w~~~-~~~~~~~---~~~~~~d-~~~~~vv~~HhpP~~~~---~~~~~~~-------- 118 (166)
T cd07404 69 -----------VRIIGTTL---WSDI-SLFGEAA---ARMRMND-FRGKTVVVTHHAPSPLS---LAPQYGD-------- 118 (166)
T ss_pred -----------EEEEeeec---cccc-CccchHH---HHhCCCC-CCCCEEEEeCCCCCccc---cCccccC--------
Confidence 33333320 0110 1112222 2222222 23799999999998742 1111100
Q ss_pred ccCCCccchhccccCHHHHH---HHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEe
Q 010015 255 RTGHSQEILYQNYITEESSN---RLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTV 310 (520)
Q Consensus 255 ~~~~~~g~~yqn~ls~e~s~---~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv 310 (520)
.......++ ++++..++++++|||+|..+.... ++++.++.
T Consensus 119 -----------~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~~~----~g~~~~~n 162 (166)
T cd07404 119 -----------SLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDYRI----GGTRVLSN 162 (166)
T ss_pred -----------CCcchhhhhccHhHHhhcCCCEEEECCccccceEEE----CCEEEEec
Confidence 001112222 334455678999999999987765 56655543
No 34
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.42 E-value=1.7e-12 Score=118.63 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=43.4
Q ss_pred HHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEc
Q 010015 273 SNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASN 331 (520)
Q Consensus 273 s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~ 331 (520)
...++...+++++++||.|....... +++..++.||+++......++|.++++.+
T Consensus 101 ~~~~~~~~~~~~~~~GH~H~~~~~~~----~~~~~~~~Gs~~~~~~~~~~~~~i~~~~~ 155 (156)
T PF12850_consen 101 LREILSRENVDLVLHGHTHRPQVFKI----GGIHVINPGSIGGPRHGDQSGYAILDIED 155 (156)
T ss_dssp HHHHHHHTTSSEEEESSSSSEEEEEE----TTEEEEEE-GSSS-SSSSSEEEEEEEETT
T ss_pred hhhhhcccCCCEEEcCCcccceEEEE----CCEEEEECCcCCCCCCCCCCEEEEEEEec
Confidence 44566677889999999999887664 68999999999987665578999999864
No 35
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.34 E-value=9.2e-12 Score=121.21 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=49.0
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHH
Q 010015 50 YDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFK 129 (520)
Q Consensus 50 ~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~ 129 (520)
++|++++||+|+..... ...+.+.++. +...+||+|+++||+++.+.... + .+.
T Consensus 1 ~~~i~~~sDlH~~~~~~-----------------~~~~~~~~~~-~~~~~~d~vl~~GD~~~~~~~~~-~-------~~~ 54 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS-----------------RERLERLVEK-INALKPDLVVLTGDLVDGSVDVL-E-------LLL 54 (223)
T ss_pred CCEEEEEeecCCCccCC-----------------HHHHHHHHHH-HhccCCCEEEEcCcccCCcchhh-H-------HHH
Confidence 47999999999863211 0012333322 34568999999999999774221 1 122
Q ss_pred HHhccccCCCCCCceEEEccCCCCCCcc
Q 010015 130 HIFGLKSQDRFRDIRVHFLPGNHDNGYA 157 (520)
Q Consensus 130 ~if~~~~~~~~~~iPv~~vpGNHDig~~ 157 (520)
+.+..- ....|+++++||||....
T Consensus 55 ~~l~~l----~~~~~v~~v~GNHD~~~~ 78 (223)
T cd07385 55 ELLKKL----KAPLGVYAVLGNHDYYSG 78 (223)
T ss_pred HHHhcc----CCCCCEEEECCCcccccC
Confidence 333211 245799999999997654
No 36
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.30 E-value=5.7e-10 Score=107.74 Aligned_cols=208 Identities=19% Similarity=0.276 Sum_probs=122.6
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcC--CCCCCCCHHHHHHHHH
Q 010015 49 GYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHF--DGGPYLSDEEWQESLN 126 (520)
Q Consensus 49 ~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~--d~G~~~s~~e~~~~~~ 126 (520)
.++|++.+||+|-... . +++.. .+....++|++++.|||+ +.+. ..+-.+..
T Consensus 2 ~~mkil~vtDlHg~~~------------~---------~~k~~-~~~~~~~~D~lviaGDlt~~~~~~---~~~~~~~~- 55 (226)
T COG2129 2 KKMKILAVTDLHGSED------------S---------LKKLL-NAAADIRADLLVIAGDLTYFHFGP---KEVAEELN- 55 (226)
T ss_pred CcceEEEEeccccchH------------H---------HHHHH-HHHhhccCCEEEEecceehhhcCc---hHHHHhhh-
Confidence 3689999999995310 0 12222 222344899999999999 6662 22211110
Q ss_pred HHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCC--cceEEEeCCEEEEEEeCCCC-CCCCCCC
Q 010015 127 RFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGK--RNYRFTVGKVEFIVVDAQTL-DGHPEGN 203 (520)
Q Consensus 127 Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~--~ny~~~ig~~~fV~LDS~~l-~g~~~g~ 203 (520)
.+..+- ...+|++++|||-|... . .+..+..|. .+.+..+|++.|+++--... +.....+
T Consensus 56 ~~e~l~-------~~~~~v~avpGNcD~~~---------v-~~~l~~~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e 118 (226)
T COG2129 56 KLEALK-------ELGIPVLAVPGNCDPPE---------V-IDVLKNAGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPRE 118 (226)
T ss_pred HHHHHH-------hcCCeEEEEcCCCChHH---------H-HHHHHhcccccccceEEecCcEEEEecccCCCCCCCccc
Confidence 022221 36889999999988421 1 222222443 23678899999999644211 1111234
Q ss_pred CCHHHH-HHHHHhhccCCCCCe-EEEEccCCCCCCC-CCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHh
Q 010015 204 LAAATW-DFVKNVSIDFQLLPR-VLLTHIPLYRRDE-TPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLI 280 (520)
Q Consensus 204 i~~~ql-~wL~~ll~~~~~~p~-ILltH~PL~~~~~-~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l 280 (520)
+.++++ .-+++..... ..+. |+++|.|+|.... ++.| |.+ .....-+++++.+
T Consensus 119 ~~E~~I~s~l~~~v~~~-~~~~~Il~~HaPP~gt~~d~~~g----------------------~~h-vGS~~vr~~ieef 174 (226)
T COG2129 119 FSEDEIYSKLKSLVKKA-DNPVNILLTHAPPYGTLLDTPSG----------------------YVH-VGSKAVRKLIEEF 174 (226)
T ss_pred cCHHHHHHHHHHHHhcc-cCcceEEEecCCCCCccccCCCC----------------------ccc-cchHHHHHHHHHh
Confidence 444443 3344433322 2332 9999999998532 1111 222 3345678899999
Q ss_pred CCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEcC
Q 010015 281 KPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASNS 332 (520)
Q Consensus 281 ~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~~ 332 (520)
+|.+.+|||+|.+.-..- .|++..+.-|+.+ ...|.++.+...
T Consensus 175 qP~l~i~GHIHEs~G~d~---iG~TivVNPG~~~------~g~yA~i~l~~~ 217 (226)
T COG2129 175 QPLLGLHGHIHESRGIDK---IGNTIVVNPGPLG------EGRYALIELEKE 217 (226)
T ss_pred CCceEEEeeecccccccc---cCCeEEECCCCcc------CceEEEEEecCc
Confidence 999999999998644322 2566666666743 457889988654
No 37
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.29 E-value=8.8e-11 Score=106.02 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCc-eEEEccCCCCC
Q 010015 97 PFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDI-RVHFLPGNHDN 154 (520)
Q Consensus 97 ~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~i-Pv~~vpGNHDi 154 (520)
..+||+|+++||+++.+ ..+++.. +.+.+. ..+. +++.++||||.
T Consensus 17 ~~~~D~vi~~GD~~~~~---~~~~~~~----~~~~l~------~~~~~~~~~v~GNHD~ 62 (135)
T cd07379 17 IPDGDVLIHAGDLTERG---TLEELQK----FLDWLK------SLPHPHKIVIAGNHDL 62 (135)
T ss_pred CCCCCEEEECCCCCCCC---CHHHHHH----HHHHHH------hCCCCeEEEEECCCCC
Confidence 45799999999999877 4444443 333333 1223 36789999995
No 38
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.27 E-value=3.5e-10 Score=111.66 Aligned_cols=161 Identities=21% Similarity=0.292 Sum_probs=83.5
Q ss_pred hCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHH-
Q 010015 95 ILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKE- 173 (520)
Q Consensus 95 ~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~- 173 (520)
++..+||+|+++||++++. .+ .++.+. ....|+++++||||........ ...++|.+.
T Consensus 21 l~~~~pD~Vl~~GDi~~~~-----~~---~~~~l~----------~l~~p~~~V~GNHD~~~~~~~~---~k~~~l~~~L 79 (238)
T cd07397 21 LHLLQPDLVLFVGDFGNES-----VQ---LVRAIS----------SLPLPKAVILGNHDAWYDATFR---KKGDRVQEQL 79 (238)
T ss_pred HhccCCCEEEECCCCCcCh-----HH---HHHHHH----------hCCCCeEEEcCCCccccccccc---chHHHHHHHH
Confidence 3556899999999998643 11 222222 2356899999999976543211 123345433
Q ss_pred --hCCcc---eEEEeCCEEEEEEeCCCCCCCCCCCCCH-------------HHHHH-HHHhhccCCCCCeEEEEccCCCC
Q 010015 174 --FGKRN---YRFTVGKVEFIVVDAQTLDGHPEGNLAA-------------ATWDF-VKNVSIDFQLLPRVLLTHIPLYR 234 (520)
Q Consensus 174 --Fg~~n---y~~~ig~~~fV~LDS~~l~g~~~g~i~~-------------~ql~w-L~~ll~~~~~~p~ILltH~PL~~ 234 (520)
.|... -..++....+..+-+...........++ +..+. ++......++.+.|+++|.++..
T Consensus 80 ~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~VliaH~~~~G 159 (238)
T cd07397 80 ELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLILLAHNGPSG 159 (238)
T ss_pred HHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEEEeCcCCcC
Confidence 23221 1122333333344443222111111222 11222 22232334577899999999876
Q ss_pred CC---CCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhC----CcEEEECCccCC
Q 010015 235 RD---ETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIK----PVLVLSGHDHDQ 293 (520)
Q Consensus 235 ~~---~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~----p~lVfsGH~H~~ 293 (520)
.. ..+||.....+ -.++-+++.+++| +.++ |+++++||.|..
T Consensus 160 ~g~~~~~~cg~d~~~~----------------~~~~G~~~l~~ai-~~~~~~~~~~l~~fGH~H~~ 208 (238)
T cd07397 160 LGSDAEDPCGRDWKPP----------------GGDWGDPDLALAI-SQIQQGRQVPLVVFGHMHHR 208 (238)
T ss_pred CCcccccccccccCCc----------------CCCCCCHHHHHHH-HHHhccCCCCEEEeCCccCc
Confidence 42 34677422111 1233455555555 3333 789999999987
No 39
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.22 E-value=4.2e-10 Score=108.54 Aligned_cols=180 Identities=19% Similarity=0.322 Sum_probs=97.9
Q ss_pred CCCCEEEEcCCcCCCCCCCCHHHHH----------------------HHHHHHHHHhccccCCCCCCceEEEccCCCCCC
Q 010015 98 FKPDVILFLGDHFDGGPYLSDEEWQ----------------------ESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 98 ~~PD~VI~lGDL~d~G~~~s~~e~~----------------------~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
.+||+|+++||+..... ..++|. +.+..|-+++. ..++|+++||||||-.
T Consensus 31 ~~~D~~v~~G~~~~~~a--~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L~------~~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 31 KGPDAVVFVGDLLKAEA--RSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRILG------ELGVPVFVVPGNMDAP 102 (255)
T ss_dssp HT-SEEEEES-SS-TCH--HHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHHH------CC-SEEEEE--TTS-S
T ss_pred cCCCEEEEeccccccch--hhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHHH------hcCCcEEEecCCCCch
Confidence 37999999999996541 234555 23345666665 5899999999999943
Q ss_pred cccccCCCHHHHHHHHHHhC----Cc-------ceEEEeCCEEEEEEeCCCCCCCC-CC---CCCHHHHHHHHHhhccCC
Q 010015 156 YAALLSHKPEIVRRYEKEFG----KR-------NYRFTVGKVEFIVVDAQTLDGHP-EG---NLAAATWDFVKNVSIDFQ 220 (520)
Q Consensus 156 ~~~~~~~~~~~~~rf~~~Fg----~~-------ny~~~ig~~~fV~LDS~~l~g~~-~g---~i~~~ql~wL~~ll~~~~ 220 (520)
. ..-++..++ .+ ++.+.-|.+.+++.-..-..+.. .. ....-..+|..+.+.+.+
T Consensus 103 ~----------~~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~elk 172 (255)
T PF14582_consen 103 E----------RFFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRELK 172 (255)
T ss_dssp H----------HHHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGGCT
T ss_pred H----------HHHHHHHhccceeccceeeeeeeecccCCcEEEEecCccccCCCccccccccchHHHHHHHHHHHHhcc
Confidence 2 122333333 11 22333345888887653221111 11 112223455555566666
Q ss_pred CCCeEEEEccCC-CCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCCCcEEec
Q 010015 221 LLPRVLLTHIPL-YRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHE 299 (520)
Q Consensus 221 ~~p~ILltH~PL-~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~ 299 (520)
..+.|++.|.|+ +.. |.. ....+....|++.++|++++|||.|......+-
T Consensus 173 ~~r~IlLfhtpPd~~k-----g~~-----------------------h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~l 224 (255)
T PF14582_consen 173 DYRKILLFHTPPDLHK-----GLI-----------------------HVGSAAVRDLIKTYNPDIVLCGHIHESHGKESL 224 (255)
T ss_dssp SSEEEEEESS-BTBCT-----CTB-----------------------TTSBHHHHHHHHHH--SEEEE-SSS-EE--EEE
T ss_pred cccEEEEEecCCccCC-----Ccc-----------------------cccHHHHHHHHHhcCCcEEEecccccchhhHHh
Confidence 778999999998 211 100 012245677999999999999999987643332
Q ss_pred cCCCCeEEEEeCceeecCCCCCCcEEEEEEEcC
Q 010015 300 SNHEHIKEHTVGTISWQQGNLYPSFRLLSASNS 332 (520)
Q Consensus 300 ~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~~ 332 (520)
+.+.-+.-||++- -+|.++.+..+
T Consensus 225 ---G~TlVVNPGsL~~------G~yAvI~l~~~ 248 (255)
T PF14582_consen 225 ---GKTLVVNPGSLAE------GDYAVIDLEQD 248 (255)
T ss_dssp ---TTEEEEE--BGGG------TEEEEEETTTT
T ss_pred ---CCEEEecCccccc------CceeEEEeccc
Confidence 6788888899873 37888887665
No 40
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.20 E-value=2.1e-09 Score=112.25 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=53.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHH-HH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNR-FK 129 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~R-f~ 129 (520)
+|++++||+||+..... + ++.... ...+.+.+.. +...+||+|+++||++|.....+..... ...+ +.
T Consensus 1 MKilhiSD~HLG~~~~~---~-----~~~~~~-~~~l~~ii~~-a~~~~vD~VliaGDlfD~~~~~~~~~~~-~~~~~l~ 69 (340)
T PHA02546 1 MKILLIGDQHLGVRKDD---P-----WFQNYQ-LKFIKQAIEY-SKAHGITTWIQLGDTFDVRKAITQNTMN-FVREKIF 69 (340)
T ss_pred CeEEEEeeecCCCcCCC---h-----hhHHHH-HHHHHHHHHH-HHHcCCCEEEECCcccCCCCCCCHHHHH-HHHHHHH
Confidence 58999999999753221 1 111111 1124444433 4567899999999999975333333221 1222 22
Q ss_pred HHhccccCCCCCCceEEEccCCCCCCc
Q 010015 130 HIFGLKSQDRFRDIRVHFLPGNHDNGY 156 (520)
Q Consensus 130 ~if~~~~~~~~~~iPv~~vpGNHDig~ 156 (520)
+.+. ..++|++.++||||..+
T Consensus 70 ~~L~------~~gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 70 DLLK------EAGITLHVLVGNHDMYY 90 (340)
T ss_pred HHHH------HCCCeEEEEccCCCccc
Confidence 2332 35789999999999754
No 41
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.14 E-value=2.3e-09 Score=99.43 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=37.3
Q ss_pred hCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEcC
Q 010015 280 IKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASNS 332 (520)
Q Consensus 280 l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~~ 332 (520)
...++|++||+|....... +++..++.||.+.......|+|.++++.++
T Consensus 105 ~~~d~vi~GHtH~~~~~~~----~~~~~iNpGs~~~~~~~~~~~~~il~~~~~ 153 (158)
T TIGR00040 105 LGVDVLIFGHTHIPVAEEL----RGILLINPGSLTGPRNGNTPSYAILDVDKD 153 (158)
T ss_pred cCCCEEEECCCCCCccEEE----CCEEEEECCccccccCCCCCeEEEEEecCC
Confidence 3558999999999876555 578899999987543323689999998664
No 42
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.14 E-value=5.4e-09 Score=99.29 Aligned_cols=65 Identities=26% Similarity=0.255 Sum_probs=46.4
Q ss_pred HHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecC----CCCCCcEEEEEEEcCCcccCCcccccEEEeEEec
Q 010015 276 LLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQ----GNLYPSFRLLSASNSALLNMSNLEEAVLTRLCFL 351 (520)
Q Consensus 276 LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~----g~~~Pgf~llsl~~~~~~~~~~~~~~~~t~~C~L 351 (520)
+.+..+.+++++||+|....... +++..++.||++... +...|+|.++++... .+..+.+.|
T Consensus 101 ~~~~~~~dvii~GHTH~p~~~~~----~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~----------~~~~~~~~l 166 (178)
T cd07394 101 LQRQLDVDILISGHTHKFEAFEH----EGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGS----------KVVTYVYQL 166 (178)
T ss_pred HHHhcCCCEEEECCCCcceEEEE----CCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCC----------eEEEEEEEE
Confidence 44455669999999998765444 578999999998432 233579999998655 245577777
Q ss_pred ccc
Q 010015 352 PMQ 354 (520)
Q Consensus 352 P~q 354 (520)
+++
T Consensus 167 ~~~ 169 (178)
T cd07394 167 IDG 169 (178)
T ss_pred ECC
Confidence 654
No 43
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.13 E-value=4.5e-10 Score=103.35 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=41.1
Q ss_pred HHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEc
Q 010015 275 RLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASN 331 (520)
Q Consensus 275 ~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~ 331 (520)
.++...+.+++++||+|....... +++..++.||++...+...++|.++++.+
T Consensus 96 ~~~~~~~~d~vi~GHtH~~~~~~~----~~~~~inpGs~~~~~~~~~~~~~i~~~~~ 148 (155)
T cd00841 96 YLAKEGGADVVLYGHTHIPVIEKI----GGVLLLNPGSLSLPRGGGPPTYAILEIDD 148 (155)
T ss_pred hhhhhcCCCEEEECcccCCccEEE----CCEEEEeCCCccCcCCCCCCeEEEEEecC
Confidence 345556679999999999876554 57889999999866444467999999875
No 44
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.13 E-value=8e-10 Score=96.22 Aligned_cols=49 Identities=33% Similarity=0.488 Sum_probs=34.0
Q ss_pred hhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCC
Q 010015 94 SILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHD 153 (520)
Q Consensus 94 ~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHD 153 (520)
.....+||+|+++||+++.+.......+.. +.... ....|++.++||||
T Consensus 21 ~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~GNHD 69 (131)
T cd00838 21 LAAAEKPDFVLVLGDLVGDGPDPEEVLAAA----LALLL-------LLGIPVYVVPGNHD 69 (131)
T ss_pred HhcccCCCEEEECCcccCCCCCchHHHHHH----HHHhh-------cCCCCEEEeCCCce
Confidence 346789999999999999885432222111 11121 47889999999999
No 45
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.11 E-value=5.5e-09 Score=103.13 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCce
Q 010015 272 SSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTI 313 (520)
Q Consensus 272 ~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~ 313 (520)
...++++..+.++++|||+|.........+..+...+..|+.
T Consensus 176 ~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW 217 (231)
T TIGR01854 176 EVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDW 217 (231)
T ss_pred HHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCC
Confidence 345556666789999999999875543222235678888884
No 46
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.08 E-value=4.4e-09 Score=104.46 Aligned_cols=213 Identities=14% Similarity=0.155 Sum_probs=99.5
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCC--CCCHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGP--YLSDEEWQESLNRF 128 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~--~~s~~e~~~~~~Rf 128 (520)
+|++++||+|+..... ...+ .+.+.+. ....+||.|+++||++|... ....+...+..+.+
T Consensus 1 M~i~~iSDlHl~~~~~----------~~~~-----~~~~~l~--~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l 63 (241)
T PRK05340 1 MPTLFISDLHLSPERP----------AITA-----AFLRFLR--GEARQADALYILGDLFEAWIGDDDPSPFAREIAAAL 63 (241)
T ss_pred CcEEEEeecCCCCCCh----------hHHH-----HHHHHHH--hhhccCCEEEEccceeccccccCcCCHHHHHHHHHH
Confidence 4799999999964211 0000 1112221 13357999999999998421 11112222223333
Q ss_pred HHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhC----CcceEEEeCCEEEEEEeCCCCCCCCCCCC
Q 010015 129 KHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFG----KRNYRFTVGKVEFIVVDAQTLDGHPEGNL 204 (520)
Q Consensus 129 ~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg----~~ny~~~ig~~~fV~LDS~~l~g~~~g~i 204 (520)
+++ . ..++|+++++||||.... ..|.+..| +....++++|.+++..-.-.+..
T Consensus 64 ~~l-~------~~g~~v~~v~GNHD~~~~----------~~~~~~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~------ 120 (241)
T PRK05340 64 KAL-S------DSGVPCYFMHGNRDFLLG----------KRFAKAAGMTLLPDPSVIDLYGQRVLLLHGDTLCT------ 120 (241)
T ss_pred HHH-H------HcCCeEEEEeCCCchhhh----------HHHHHhCCCEEeCCcEEEEECCEEEEEECCccccc------
Confidence 333 2 245899999999996322 23444445 22334677887777764322211
Q ss_pred CHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcE
Q 010015 205 AAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVL 284 (520)
Q Consensus 205 ~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~l 284 (520)
.....+++.++.... ....+|.+.|+..... -.+.+.++-..........+.+ ...+...++++..+.+.
T Consensus 121 ~d~~y~~~r~~~r~~--~~~~~~~~~p~~~~~~-------ia~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 190 (241)
T PRK05340 121 DDKAYQRFRRKVRNP--WLQWLFLALPLSIRLR-------IAAKMRAKSKAANQSKSLEIMD-VNPEAVAALMEKHGVDT 190 (241)
T ss_pred CCHHHHHHHHHHhCH--HHHHHHHhCCHHHHHH-------HHHHHHHHHHHhcCCCcccccC-CCHHHHHHHHHHhCCCE
Confidence 223344444443321 1111222223211000 0000000000000000001111 12233456667777899
Q ss_pred EEECCccCCCcEEeccCCCCeEEEEeCce
Q 010015 285 VLSGHDHDQCTVSHESNHEHIKEHTVGTI 313 (520)
Q Consensus 285 VfsGH~H~~c~~~h~~~~~~i~Eitv~S~ 313 (520)
+++||+|............+...+..|+.
T Consensus 191 ~i~GH~H~~~~~~~~~~~~~~~~~~lgdw 219 (241)
T PRK05340 191 LIHGHTHRPAIHQLQAGGQPATRIVLGDW 219 (241)
T ss_pred EEECcccCcceeeccCCCcceEEEEeCCC
Confidence 99999998765433211123456777773
No 47
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.05 E-value=3.4e-09 Score=107.72 Aligned_cols=115 Identities=16% Similarity=0.078 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhcceEEEEecccCcccCCCCCCCCCCCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHH
Q 010015 8 LTLFLCLTWTITLLYGEMVAFWIPTLRSCTWPSSSSMDGVDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYM 87 (520)
Q Consensus 8 ~~~~l~~~w~~~~~~~E~~~~~~~~~~~C~W~~~~~~~~~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l 87 (520)
...+.+.+|....++.|-..+.... -.|.... .......++++++||.|..... .+ +
T Consensus 6 ~~~i~~~~~~~~~~~~~~~~l~~~~---~~i~~~~-~~~~~~~~~iv~lSDlH~~~~~-------------~~------~ 62 (284)
T COG1408 6 GIAITVIALASYAHLLEPGWLRVVK---LTILTPK-LPASLQGLKIVQLSDLHSLPFR-------------EE------K 62 (284)
T ss_pred HHHHHHHHHHHHHHhcccceEEEEE---EEeecCC-CCcccCCeEEEEeehhhhchhh-------------HH------H
Confidence 3455666676667777766553322 1222221 1123467899999999985311 00 1
Q ss_pred HHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcc
Q 010015 88 RRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYA 157 (520)
Q Consensus 88 ~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~ 157 (520)
.+.+ ..+....||.|+++||+++.......+.+.+ .+.++ ....++|++.||||.+..
T Consensus 63 ~~~~-~~i~~~~~DlivltGD~~~~~~~~~~~~~~~---~L~~L--------~~~~gv~av~GNHd~~~~ 120 (284)
T COG1408 63 LALL-IAIANELPDLIVLTGDYVDGDRPPGVAALAL---FLAKL--------KAPLGVFAVLGNHDYGVD 120 (284)
T ss_pred HHHH-HHHHhcCCCEEEEEeeeecCCCCCCHHHHHH---HHHhh--------hccCCEEEEecccccccc
Confidence 1112 2234456799999999999621112333333 22222 245689999999997654
No 48
>PRK09453 phosphodiesterase; Provisional
Probab=99.02 E-value=4.7e-09 Score=99.67 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=35.0
Q ss_pred CcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEE
Q 010015 282 PVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSA 329 (520)
Q Consensus 282 p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl 329 (520)
.+++++||+|....... ++...++.||.+...|...++|.++++
T Consensus 119 ~d~vi~GHtH~p~~~~~----~~~~~iNpGs~~~p~~~~~~s~~il~~ 162 (182)
T PRK09453 119 GDVLVYGHTHIPVAEKQ----GGIILFNPGSVSLPKGGYPASYGILDD 162 (182)
T ss_pred CCEEEECCCCCCcceEE----CCEEEEECCCccccCCCCCCeEEEEEC
Confidence 58999999998766554 578999999988544555679999886
No 49
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.00 E-value=2.9e-08 Score=107.37 Aligned_cols=211 Identities=16% Similarity=0.172 Sum_probs=120.4
Q ss_pred HHHHHHHhhCCCC-CCEEEEcCCcCCCCCCC-CHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccC---
Q 010015 87 MRRAFFASILPFK-PDVILFLGDHFDGGPYL-SDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLS--- 161 (520)
Q Consensus 87 l~r~~~~~~~~~~-PD~VI~lGDL~d~G~~~-s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~--- 161 (520)
|..++..+....+ +|+|+.+||......|. +.++-...+.++.+.+... .+++|+|...||||+-..+...
T Consensus 197 ies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~----FpdvpvypalGNhe~~P~N~F~~~~ 272 (577)
T KOG3770|consen 197 IESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEY----FPDVPVYPALGNHEIHPVNLFAPGS 272 (577)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHh----CCCCceeeecccCCCCcHhhcCCCC
Confidence 3445555544455 99999999999776553 2333222333333333222 3589999999999975432110
Q ss_pred CCHHHH-----HHHHHHhC------------C-cceE-EEeCCEEEEEEeCCCCCCCC-----CCCCCHHHHHHHHHhhc
Q 010015 162 HKPEIV-----RRYEKEFG------------K-RNYR-FTVGKVEFIVVDAQTLDGHP-----EGNLAAATWDFVKNVSI 217 (520)
Q Consensus 162 ~~~~~~-----~rf~~~Fg------------~-~ny~-~~ig~~~fV~LDS~~l~g~~-----~g~i~~~ql~wL~~ll~ 217 (520)
...... +.+...+. . .+|. ...+|.++|.||+....... +.....+|++|+...+.
T Consensus 273 ~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~ 352 (577)
T KOG3770|consen 273 VPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQ 352 (577)
T ss_pred CcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHH
Confidence 110000 11111111 1 2343 34599999999997554332 33456778999988553
Q ss_pred --cCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCC--cEEEECCccCC
Q 010015 218 --DFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKP--VLVLSGHDHDQ 293 (520)
Q Consensus 218 --~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p--~lVfsGH~H~~ 293 (520)
+.++..+=++.|+|+-. ..|... | ++| .-+++..+.. ...|.||+|..
T Consensus 353 ~ae~~GekVhil~HIPpG~---~~c~~~----w---------------s~~------f~~iv~r~~~tI~gqf~GH~h~d 404 (577)
T KOG3770|consen 353 EAESAGEKVHILGHIPPGD---GVCLEG----W---------------SIN------FYRIVNRFRSTIAGQFYGHTHID 404 (577)
T ss_pred HHHhcCCEEEEEEeeCCCC---cchhhh----h---------------hHH------HHHHHHHHHHhhhhhccccCcce
Confidence 45577899999999876 235421 1 111 3345555543 56799999987
Q ss_pred CcEEeccCCC----CeEEEEeCceeecCCCCCCcEEEEEEEc
Q 010015 294 CTVSHESNHE----HIKEHTVGTISWQQGNLYPSFRLLSASN 331 (520)
Q Consensus 294 c~~~h~~~~~----~i~Eitv~S~S~~~g~~~Pgf~llsl~~ 331 (520)
.-..+..+.. ++. +.-+|+.-+. +..|||++..+++
T Consensus 405 ~f~v~yde~~~~p~~v~-~i~~svtty~-~~~p~yr~y~~~~ 444 (577)
T KOG3770|consen 405 EFRVFYDEETGHPIAVA-YIGPSVTTYY-NKNPGYRIYAVDS 444 (577)
T ss_pred eEEEEeccccCCceeee-eccccceehh-ccCCCceecccCc
Confidence 6555443321 111 2224444332 4579999988873
No 50
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.97 E-value=9.1e-09 Score=109.39 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=35.8
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCC
Q 010015 49 GYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPY 115 (520)
Q Consensus 49 ~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~ 115 (520)
+.+||+++||+||+.....+.+ ..+.+ ..+.+.+.. +...+||+|+++|||+|....
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r------~~D~~---~~f~eil~~-a~~~~vD~VLiaGDLFd~~~P 58 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVR------GDDSW---NTFEEVLQI-AKEQDVDMILLGGDLFHENKP 58 (405)
T ss_pred CceEEEEEcCCCCCCccCCchh------hhhHH---HHHHHHHHH-HHHcCCCEEEECCccCCCCCC
Confidence 4699999999999743211100 01111 123444433 356789999999999998754
No 51
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.93 E-value=1.1e-08 Score=92.00 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCcEEEECCccCCCcE
Q 010015 272 SSNRLLDLIKPVLVLSGHDHDQCTV 296 (520)
Q Consensus 272 ~s~~LL~~l~p~lVfsGH~H~~c~~ 296 (520)
...++++..+++++|+||+|.....
T Consensus 82 ~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 82 AFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred HHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 3455666678899999999987654
No 52
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.85 E-value=1.4e-08 Score=98.34 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=46.5
Q ss_pred CCCCCEEEEcCCcCCCCC---CCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHH
Q 010015 97 PFKPDVILFLGDHFDGGP---YLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKE 173 (520)
Q Consensus 97 ~~~PD~VI~lGDL~d~G~---~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~ 173 (520)
..+||.++++||++|.-. ....+.+......+.+.+ ..+.++++++||||..... -+...
T Consensus 28 ~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~v~~v~GNHD~~~~~----------~~~~~ 90 (217)
T cd07398 28 LGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA-------DRGTRVYYVPGNHDFLLGD----------FFAEE 90 (217)
T ss_pred cCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH-------HCCCeEEEECCCchHHHHh----------HHHHH
Confidence 468999999999997421 111222222223344333 2568999999999964321 12222
Q ss_pred hCC----cce-EEEeCCEEEEEEeCC
Q 010015 174 FGK----RNY-RFTVGKVEFIVVDAQ 194 (520)
Q Consensus 174 Fg~----~ny-~~~ig~~~fV~LDS~ 194 (520)
.+. ... .+.+++.++.+.-.-
T Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~~HG~ 116 (217)
T cd07398 91 LGLILLPDPLVHLELDGKRILLEHGD 116 (217)
T ss_pred cCCEEeccceEEEeeCCeEEEEECCC
Confidence 221 122 567778888777553
No 53
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.84 E-value=7.5e-08 Score=105.51 Aligned_cols=224 Identities=19% Similarity=0.233 Sum_probs=108.3
Q ss_pred cccCCCCCCC---CCCCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHH-HhhCCCCCCEEEEcCCcC
Q 010015 35 SCTWPSSSSM---DGVDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFF-ASILPFKPDVILFLGDHF 110 (520)
Q Consensus 35 ~C~W~~~~~~---~~~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~-~~~~~~~PD~VI~lGDL~ 110 (520)
.+-||..+.. .......+++++||+|++...... ..+..+ .++ +..... ......+||.+|++||++
T Consensus 225 ~i~~p~~p~~~~~~~~~~~~~i~~ISDlHlgs~~~~~-------~~l~~l-i~~-L~g~~~~~~~~~~~~d~lVIaGDiv 295 (504)
T PRK04036 225 EIIRPDVPRTKEPPTKDEKVYAVFISDVHVGSKEFLE-------DAFEKF-IDW-LNGEVGNEEEIASRVKYLIIAGDLV 295 (504)
T ss_pred EEECCCCCccCCCCcCCCccEEEEEcccCCCCcchhH-------HHHHHH-HHH-HhCCCccchhhhhcCCEEEEeCccc
Confidence 4567765422 223467999999999997542210 001111 000 000000 000156899999999999
Q ss_pred CCCC-CCC-HH-----HHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCcc-----
Q 010015 111 DGGP-YLS-DE-----EWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKRN----- 178 (520)
Q Consensus 111 d~G~-~~s-~~-----e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~n----- 178 (520)
|... +.. ++ ...+.++.+.+.+..- ...+|++++|||||......-+ +.....+.+.|...+
T Consensus 296 d~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L----~~~i~V~~ipGNHD~~~~~lPQ--~~l~~~l~~~l~~~~v~~ls 369 (504)
T PRK04036 296 DGIGIYPGQEEELEIVDIYEQYEAAAEYLKQI----PEDIKIIISPGNHDAVRQAEPQ--PAFPEEIRSLFPEHNVTFVS 369 (504)
T ss_pred ccccCCccchhhccchhhHHHHHHHHHHHHhh----hcCCeEEEecCCCcchhhccCC--CCccHHHHHhcCcCCeEEec
Confidence 8521 101 11 1112233444444421 2468999999999964321111 111123333343211
Q ss_pred --eEEEeCCEEEEEEeCCCCCC---CCCCCCCHHHHHHHHHhhccCCCCCeEEEEcc-CCCCCCCCCCCCCCCCcccchh
Q 010015 179 --YRFTVGKVEFIVVDAQTLDG---HPEGNLAAATWDFVKNVSIDFQLLPRVLLTHI-PLYRRDETPCGPHRSSPIINQR 252 (520)
Q Consensus 179 --y~~~ig~~~fV~LDS~~l~g---~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~-PL~~~~~~~Cg~~r~~~~~~~~ 252 (520)
+.+.+++.++++.-...++. .-.+.-.......+++.+... |. |.+. +..+|-|....+
T Consensus 370 NP~~i~l~G~~iLl~HG~~idDl~~~i~~~s~~~p~~~m~~~l~~r---------HlaPt~p-~~~~~~p~~~D~----- 434 (504)
T PRK04036 370 NPALVNLHGVDVLIYHGRSIDDVISLIPGASYEKPGKAMEELLKRR---------HLAPIYG-GRTPIAPEKEDY----- 434 (504)
T ss_pred CCeEEEECCEEEEEECCCCHHHHHhhcccccccCHHHHHHHHHHhc---------ccCCCCC-CCEEeCcCCCCC-----
Confidence 24566777776654322110 000000111234455544321 32 3332 222343311111
Q ss_pred hhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceee
Q 010015 253 IVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISW 315 (520)
Q Consensus 253 ~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~ 315 (520)
+ +++. .|+++++||.|.+....+ +++..+++|||+-
T Consensus 435 ---------------l-------vi~~-~Pdv~~~GH~H~~~~~~~----~g~~~IN~gsf~~ 470 (504)
T PRK04036 435 ---------------L-------VIDE-VPDIFHTGHVHINGYGKY----RGVLLINSGTWQA 470 (504)
T ss_pred ---------------E-------EEec-CCCEEEeCCCCccceEEE----CCEEEEECCcccc
Confidence 1 1222 279999999999766554 6799999999873
No 54
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.84 E-value=2.2e-07 Score=100.64 Aligned_cols=229 Identities=17% Similarity=0.200 Sum_probs=103.0
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCC---CC---------
Q 010015 49 GYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGP---YL--------- 116 (520)
Q Consensus 49 ~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~---~~--------- 116 (520)
..+||++.|+-+..... ..++..+....+||++|++||.+.... +.
T Consensus 104 ~~~r~a~~SC~~~~~~~----------------------~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r 161 (453)
T PF09423_consen 104 DPFRFAFGSCQNYEDGY----------------------FPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGR 161 (453)
T ss_dssp --EEEEEE----CCC-------------------------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S--
T ss_pred CceEEEEECCCCcccCh----------------------HHHHHhhhccCCCcEEEEeCCeeeccCCccccccccccccc
Confidence 46999999999863211 123334444468999999999996442 10
Q ss_pred ------CHHHHHHHHHHHHHHhccccC-CCCCCceEEEccCCCCCCccccc---CCC----H-------HHHHHHHHHhC
Q 010015 117 ------SDEEWQESLNRFKHIFGLKSQ-DRFRDIRVHFLPGNHDNGYAALL---SHK----P-------EIVRRYEKEFG 175 (520)
Q Consensus 117 ------s~~e~~~~~~Rf~~if~~~~~-~~~~~iPv~~vpGNHDig~~~~~---~~~----~-------~~~~rf~~~Fg 175 (520)
.......+..|++..+..+.- .....+|++.+.-.||+..+... ... . ...+.|..+..
T Consensus 162 ~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p 241 (453)
T PF09423_consen 162 APEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQP 241 (453)
T ss_dssp ---SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS-
T ss_pred ccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcC
Confidence 011122233333332221100 00246899999999999643220 000 1 11222322211
Q ss_pred -----------CcceEEEeCC-EEEEEEeCCCCCCC----------------CCCCCCHHHHHHHHHhhccCCCCCeEEE
Q 010015 176 -----------KRNYRFTVGK-VEFIVVDAQTLDGH----------------PEGNLAAATWDFVKNVSIDFQLLPRVLL 227 (520)
Q Consensus 176 -----------~~ny~~~ig~-~~fV~LDS~~l~g~----------------~~g~i~~~ql~wL~~ll~~~~~~p~ILl 227 (520)
..++.|.+|+ +.|++||+..+-.. ...-+.++|++||++.+.......+||.
T Consensus 242 ~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~a~~kvi~ 321 (453)
T PF09423_consen 242 VRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQATWKVIG 321 (453)
T ss_dssp --GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH--SSEEEEE
T ss_pred ccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCCCcEEEEE
Confidence 1246789999 99999999755331 1234789999999998877667889999
Q ss_pred EccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhC-----CcEEEECCccCCCcEEeccCC
Q 010015 228 THIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIK-----PVLVLSGHDHDQCTVSHESNH 302 (520)
Q Consensus 228 tH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~-----p~lVfsGH~H~~c~~~h~~~~ 302 (520)
+-+|+....... .. .....+. + .+.. =+..+++|++.++ ..++|||+.|..+........
T Consensus 322 s~v~~~~~~~~~--~~-~~~~~~~-------d---~W~g--~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~~~~~~ 386 (453)
T PF09423_consen 322 SSVPFSPLNFPD--AA-EGLPFNM-------D---SWDG--YPAERQRLLDFLRESGIRNVVFLSGDVHASAASRIPPDD 386 (453)
T ss_dssp -SS--S---SS---SS--S--EET-------T---SGGG--SHHHHHHHHHHHHHTT---EEEEE-SSSSEEEEEEESST
T ss_pred eCCceecccccc--cc-cccccCC-------C---chhh--CHHHHHHHHHHHHhhCCCCEEEEecCcchheeeeccccc
Confidence 999887643210 00 0000000 0 0111 1245778888883 268999999998776654322
Q ss_pred --------CCeEEEEeCcee
Q 010015 303 --------EHIKEHTVGTIS 314 (520)
Q Consensus 303 --------~~i~Eitv~S~S 314 (520)
..+.|+++++++
T Consensus 387 ~~~~~~~~~~~~Ef~~s~vt 406 (453)
T PF09423_consen 387 ADPPDGPGSVGVEFTSSSVT 406 (453)
T ss_dssp T---TTS-EEEEEEE---SS
T ss_pred ccccCCCCCeEEEEECCCcc
Confidence 136788888865
No 55
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.76 E-value=2.6e-07 Score=91.83 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=24.8
Q ss_pred CCcEEEECCccCCCcEEeccCCCCeEEEEeCcee
Q 010015 281 KPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 281 ~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S 314 (520)
.|+++|+||.|....... +++..+++|||.
T Consensus 191 ~p~vii~Gh~h~~~~~~~----~~~~~vn~Gsf~ 220 (243)
T cd07386 191 VPDILHTGHVHVYGVGVY----RGVLLVNSGTWQ 220 (243)
T ss_pred CCCEEEECCCCchHhEEE----CCEEEEECCCCc
Confidence 579999999999766654 578899999976
No 56
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.62 E-value=3.1e-06 Score=85.26 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=92.7
Q ss_pred CCCCCCEEEEcCCcCCCCCCCCHH-------HHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHH
Q 010015 96 LPFKPDVILFLGDHFDGGPYLSDE-------EWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVR 168 (520)
Q Consensus 96 ~~~~PD~VI~lGDL~d~G~~~s~~-------e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~ 168 (520)
...++|++|++||+...... ++. .|.. ...|.+.+... ...++|+++|.||||- +.. +.
T Consensus 25 ~~~~~D~lI~~GDf~~~~~~-~d~~~~~~p~k~~~-~~~f~~~~~g~---~~~p~~t~fi~GNHE~-~~~--------l~ 90 (262)
T cd00844 25 EGTKVDLLICCGDFQAVRNE-ADLKCMAVPPKYRK-MGDFYKYYSGE---KKAPILTIFIGGNHEA-SNY--------LW 90 (262)
T ss_pred cCCCCcEEEEcCCCCCcCCc-chhhhhccchhhhh-hhhHHHHhcCC---ccCCeeEEEECCCCCC-HHH--------HH
Confidence 34579999999999643321 111 1111 23355555421 1367888999999993 221 11
Q ss_pred HHHHHhCC---c-------ceEEEeCCEEEEEEeCCCCCCCC------CCCCCHHHHHHH--------HHhhccCCCCCe
Q 010015 169 RYEKEFGK---R-------NYRFTVGKVEFIVVDAQTLDGHP------EGNLAAATWDFV--------KNVSIDFQLLPR 224 (520)
Q Consensus 169 rf~~~Fg~---~-------ny~~~ig~~~fV~LDS~~l~g~~------~g~i~~~ql~wL--------~~ll~~~~~~p~ 224 (520)
.. ..|. . ...+.++|++|.+|....-..+. ....++.++..+ +++.. .....-
T Consensus 91 ~l--~~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y~~r~~~~~kl~~-~~~~vD 167 (262)
T cd00844 91 EL--PYGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYHVRNIEVFKLKQ-LKQPID 167 (262)
T ss_pred hh--cCCCeecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhhhhhHHHHHHHHh-cCCCCc
Confidence 11 1221 1 23567889999998764211111 123345544332 22221 123457
Q ss_pred EEEEccCCCCCCCCC-C-CCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCCCc
Q 010015 225 VLLTHIPLYRRDETP-C-GPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQCT 295 (520)
Q Consensus 225 ILltH~PL~~~~~~~-C-g~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~c~ 295 (520)
|++||.|+....+.. . .-.+..|.+.+. ...+.+.......|++.++|+..||||.|...+
T Consensus 168 IlLSHdWP~gI~~~~~~~~l~~~~~~~~~~----------~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f~ 230 (262)
T cd00844 168 IFLSHDWPRGIYKHGDKKQLLRKKPFFRQD----------IESGTLGSPAAEELLKHLKPRYWFSAHLHVKFA 230 (262)
T ss_pred EEEeCCCCcchhhccchHHhhhcCccchhc----------ccccCCCCHHHHHHHHHhCCCEEEEecCCcccc
Confidence 999999998753210 0 001111111000 001123445677899999999999999998655
No 57
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.3e-07 Score=100.44 Aligned_cols=88 Identities=23% Similarity=0.221 Sum_probs=52.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKH 130 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~ 130 (520)
+||++.||+||+. .++..+. ....+.. .+..++. .+...++|+||+.|||+|..+.... ...+|.+
T Consensus 1 mkilHtSD~HLG~-~~~~~~~--r~~d~~~-----~f~~~l~-~a~~~~vD~vliAGDlFd~~~Ps~~-----a~~~~~~ 66 (390)
T COG0420 1 MKILHTSDWHLGS-KQLNLPS--RLEDQKK-----AFDELLE-IAKEEKVDFVLIAGDLFDTNNPSPR-----ALKLFLE 66 (390)
T ss_pred CeeEEecccccch-hhccCcc--chHHHHH-----HHHHHHH-HHHHccCCEEEEccccccCCCCCHH-----HHHHHHH
Confidence 5899999999983 2222111 1111111 1223332 2456688999999999998754322 2233444
Q ss_pred HhccccCCCCCCceEEEccCCCCCC
Q 010015 131 IFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 131 if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
.|.... ..++|+|.|+||||-.
T Consensus 67 ~l~~l~---~~~Ipv~~I~GNHD~~ 88 (390)
T COG0420 67 ALRRLK---DAGIPVVVIAGNHDSP 88 (390)
T ss_pred HHHHhc---cCCCcEEEecCCCCch
Confidence 444211 3679999999999954
No 58
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=1.5e-07 Score=94.25 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=50.3
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKH 130 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~ 130 (520)
+|++++||+||+...... +. .... ...+.+.+. .+...+||+|+++||++|..... .... ..+.++.+
T Consensus 1 mkilh~SD~Hlg~~~~~~----~~---~~~~--~~~l~~l~~-~~~~~~~D~lli~GDi~d~~~p~-~~~~-~~~~~~l~ 68 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGV----SR---LAEQ--KAFLDDLLE-FAKAEQIDALLVAGDVFDTANPP-AEAQ-ELFNAFFR 68 (253)
T ss_pred CEEEEEhhhcCCCccCCC----Ch---HHHH--HHHHHHHHH-HHHHcCCCEEEECCccCCCCCCC-HHHH-HHHHHHHH
Confidence 589999999997543221 11 1111 112344433 33456899999999999977322 2111 11222322
Q ss_pred HhccccCCCCCCceEEEccCCCCCC
Q 010015 131 IFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 131 if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
.+.. ..++|+++++||||..
T Consensus 69 ~l~~-----~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 69 NLSD-----ANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHh-----cCCceEEEEccCCCCh
Confidence 2221 1238999999999963
No 59
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.56 E-value=1.5e-07 Score=100.44 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=50.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHH-HHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQ-ESLNRFK 129 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~-~~~~Rf~ 129 (520)
+|++++||+||+...... . ..... ...+.+.. ..+...+||+||++||++|.+.. ..+. ..+.+|.
T Consensus 1 mkilh~SDlHlG~~~~~~--~--~~~~~-----~~~l~~l~-~~i~~~~~D~viIaGDifD~~~p---~~~a~~~~~~~l 67 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSK--S--RAAEH-----QAFLDWLL-EQVQEHQVDAIIVAGDIFDTGSP---PSYARELYNRFV 67 (407)
T ss_pred CEEEEEcccCCCCcccCc--c--cHHHH-----HHHHHHHH-HHHHhcCCCEEEECCccccCCCC---cHHHHHHHHHHH
Confidence 589999999997432111 0 10010 11122222 33456799999999999998732 2222 2233343
Q ss_pred HHhccccCCCCCCceEEEccCCCCCC
Q 010015 130 HIFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 130 ~if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
..+. ..++|+++|+||||..
T Consensus 68 ~~L~------~~~~~v~~I~GNHD~~ 87 (407)
T PRK10966 68 VNLQ------QTGCQLVVLAGNHDSV 87 (407)
T ss_pred HHHH------hcCCcEEEEcCCCCCh
Confidence 3333 2468999999999953
No 60
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.51 E-value=2.7e-06 Score=80.32 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=41.6
Q ss_pred HHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEcC
Q 010015 274 NRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASNS 332 (520)
Q Consensus 274 ~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~~ 332 (520)
..+-.....++++.||+|....... +++..++=||.|-.-+....+|.++.+.+.
T Consensus 102 ~~la~~~~~Dvli~GHTH~p~~~~~----~~i~~vNPGS~s~pr~~~~~sy~il~~~~~ 156 (172)
T COG0622 102 EYLAKELGADVLIFGHTHKPVAEKV----GGILLVNPGSVSGPRGGNPASYAILDVDNL 156 (172)
T ss_pred HHHHHhcCCCEEEECCCCcccEEEE----CCEEEEcCCCcCCCCCCCCcEEEEEEcCCC
Confidence 3344445569999999999887766 679999999999554443349999998765
No 61
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.45 E-value=4.2e-06 Score=78.17 Aligned_cols=179 Identities=21% Similarity=0.256 Sum_probs=97.0
Q ss_pred eEEEEEeCCCCCCCCC--C--CCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTS--L--HLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLN 126 (520)
Q Consensus 51 ~rilvISDpHL~~~~~--~--~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~ 126 (520)
+|+.-|||+||.-.-. . -+.++ . + -+....+.|+..+. .-|.|++.||+.-.-+ -+|-++ --
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W--~----g--h~ekI~k~W~~~v~--~eDiVllpGDiSWaM~---l~ea~~-Dl 66 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPW--S----G--HHEKIKKHWRSKVS--PEDIVLLPGDISWAMR---LEEAEE-DL 66 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcc--c----C--chHHHHHHHHhcCC--hhhEEEecccchhhee---chhhhh-hh
Confidence 3688899999943211 0 01111 0 1 12234455555443 3499999999974321 111111 11
Q ss_pred HHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhCCc----ceEEEeCCEEEEEE---eCCCCCCC
Q 010015 127 RFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFGKR----NYRFTVGKVEFIVV---DAQTLDGH 199 (520)
Q Consensus 127 Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg~~----ny~~~ig~~~fV~L---DS~~l~g~ 199 (520)
||... ++-.-|.+-||||+.... ..+..+...+. |..|.++|+.+++. ||.++...
T Consensus 67 ~~i~~---------LPG~K~m~rGNHDYWw~s--------~skl~n~lp~~l~~~n~~f~l~n~aI~G~RgW~s~~~~~e 129 (230)
T COG1768 67 RFIGD---------LPGTKYMIRGNHDYWWSS--------ISKLNNALPPILFYLNNGFELLNYAIVGVRGWDSPSFDSE 129 (230)
T ss_pred hhhhc---------CCCcEEEEecCCccccch--------HHHHHhhcCchHhhhccceeEeeEEEEEeecccCCCCCcC
Confidence 24332 233468899999976432 23444444432 44577788777665 44432211
Q ss_pred CCCCCCHH-HHHHHHHhh-------cc--CCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccC
Q 010015 200 PEGNLAAA-TWDFVKNVS-------ID--FQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYIT 269 (520)
Q Consensus 200 ~~g~i~~~-ql~wL~~ll-------~~--~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls 269 (520)
.++++ ..-|+++.. .+ ......|+++|.|++.+++++ | |
T Consensus 130 ---~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t~-~-----~---------------------- 178 (230)
T COG1768 130 ---PLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGTP-G-----P---------------------- 178 (230)
T ss_pred ---ccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCCCC-c-----c----------------------
Confidence 12322 233343311 11 124568999999999876532 1 1
Q ss_pred HHHHHHHHHHhCCcEEEECCccCCC
Q 010015 270 EESSNRLLDLIKPVLVLSGHDHDQC 294 (520)
Q Consensus 270 ~e~s~~LL~~l~p~lVfsGH~H~~c 294 (520)
..++++..++..++.||.|--.
T Consensus 179 ---~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 179 ---FSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred ---hHHHHhhcceeeEEeeeccCCC
Confidence 2357777788999999999754
No 62
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.42 E-value=2.8e-07 Score=86.81 Aligned_cols=88 Identities=27% Similarity=0.386 Sum_probs=48.5
Q ss_pred EEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhc
Q 010015 54 AVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFG 133 (520)
Q Consensus 54 lvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~ 133 (520)
+++||+||+.......... . +.....+..+++. .+.+...+||.|+++||++++.......++.. .. +....
T Consensus 1 l~isDlHlG~~~~~~~~g~-~---~p~~~~~~~~~~l-~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~-~~-~~~~~- 72 (172)
T cd07391 1 LVVADLHLGKEEELRRRGI-L---LPRGQTEDTLERL-DRLIEEYGPERLIILGDLKHSFGGLSRQEFEE-VA-FLRLL- 72 (172)
T ss_pred CEeEeeccchHHHHHhcCC-c---CCcccHHHHHHHH-HHHHHhcCCCEEEEeCcccccccccCHHHHHH-HH-HHHhc-
Confidence 5899999986432210000 0 0000011122332 23456678999999999998664333333222 11 11111
Q ss_pred cccCCCCCCceEEEccCCCCCC
Q 010015 134 LKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 134 ~~~~~~~~~iPv~~vpGNHDig 155 (520)
..++|+++++||||..
T Consensus 73 ------~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 73 ------AKDVDVILIRGNHDGG 88 (172)
T ss_pred ------cCCCeEEEEcccCccc
Confidence 3578999999999964
No 63
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=98.39 E-value=2.5e-06 Score=85.57 Aligned_cols=211 Identities=16% Similarity=0.227 Sum_probs=110.4
Q ss_pred EEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHH---HhhCCCCCCEEEEcCCcCCCCCCCCH-----------
Q 010015 53 VAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFF---ASILPFKPDVILFLGDHFDGGPYLSD----------- 118 (520)
Q Consensus 53 ilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~---~~~~~~~PD~VI~lGDL~d~G~~~s~----------- 118 (520)
++++||+|+++..... . .+ ++..|+ +.-... ......+...+|+.||.+++-....+
T Consensus 2 i~~vSgL~ig~~~~~~-----~--~l-~ll~d~-L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~ 72 (257)
T cd07387 2 IALVSGLGLGGNAESS-----L--SL-QLLVDW-LTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKK 72 (257)
T ss_pred EEEEcccccCCCccch-----H--HH-HHHHHH-hcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccc
Confidence 7999999998763221 1 11 111221 110000 00123466789999999986422111
Q ss_pred --HHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHH--HhC----Ccc-eEEEeCCEEEE
Q 010015 119 --EEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEK--EFG----KRN-YRFTVGKVEFI 189 (520)
Q Consensus 119 --~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~--~Fg----~~n-y~~~ig~~~fV 189 (520)
..-.+.++.+.+.+..- ...+||..+|||||-.....-+. +-...-|.+ .++ -+| |.|+++|++|.
T Consensus 73 ~~~~~~~~~~~ld~~l~~l----~~~i~V~imPG~~Dp~~~~lPQq-plh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vL 147 (257)
T cd07387 73 SSAASVEAVKELDNFLSQL----ASSVPVDLMPGEFDPANHSLPQQ-PLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVL 147 (257)
T ss_pred cchhhHHHHHHHHHHHHhh----hcCCeEEECCCCCCcccccCCCC-CCCHHHhhcccccCCcEEeCCCeEEEECCEEEE
Confidence 01122345555555432 36789999999999653321111 100112211 111 122 57899999988
Q ss_pred EEeCCCCCCCCCCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCC-CCCcccchhhhccCCCccchhcccc
Q 010015 190 VVDAQTLDGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPH-RSSPIINQRIVRTGHSQEILYQNYI 268 (520)
Q Consensus 190 ~LDS~~l~g~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~-r~~~~~~~~~~~~~~~~g~~yqn~l 268 (520)
+-..+.++.-....-.+..++.+++.+.- .|.-+-.++-..|-|. +..|+
T Consensus 148 gtsGqni~Di~ky~~~~~~l~~me~~L~w---------rHlaPTaPDTL~~yP~~~~Dpf-------------------- 198 (257)
T cd07387 148 GTSGQNVDDILKYSSLESRLDILERTLKW---------RHIAPTAPDTLWCYPFTDRDPF-------------------- 198 (257)
T ss_pred EECCCCHHHHHHhCCCCCHHHHHHHHHHh---------cccCCCCCCccccccCCCCCce--------------------
Confidence 87665432110000012335566665432 2554444444467652 22222
Q ss_pred CHHHHHHHHHHhCCcEEEECCccCCCcEEecc-CCCCeEEEEeCcee
Q 010015 269 TEESSNRLLDLIKPVLVLSGHDHDQCTVSHES-NHEHIKEHTVGTIS 314 (520)
Q Consensus 269 s~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~-~~~~i~Eitv~S~S 314 (520)
+++. -|.++|+||-|.+....... .+..++-++||+||
T Consensus 199 -------vi~~-~PhVyf~Gnq~~f~t~~~~~~~~~~v~lv~vP~Fs 237 (257)
T cd07387 199 -------ILEE-CPHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFS 237 (257)
T ss_pred -------eecC-CCCEEEeCCCcceeeeEEEcCCCCeEEEEEeCCcC
Confidence 2222 28999999999886554432 24569999999997
No 64
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.28 E-value=3.7e-05 Score=77.16 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=27.4
Q ss_pred CCCC-EEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcc
Q 010015 98 FKPD-VILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYA 157 (520)
Q Consensus 98 ~~PD-~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~ 157 (520)
.+|| +++.+||+++++... .+.+ .+...+.+. ..+. -+.++||||+.++
T Consensus 36 ~~~~~l~l~~GD~~~g~~~~---~~~~-g~~~~~~l~------~l~~-d~~~~GNHefd~g 85 (257)
T cd07406 36 ENPNTLVLFSGDVLSPSLLS---TATK-GKQMVPVLN------ALGV-DLACFGNHEFDFG 85 (257)
T ss_pred cCCCEEEEECCCccCCccch---hhcC-CccHHHHHH------hcCC-cEEeecccccccC
Confidence 4677 999999999866321 1110 011222222 1222 3668999998665
No 65
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.17 E-value=0.00011 Score=72.94 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=28.9
Q ss_pred CCCCCC-EEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcc
Q 010015 96 LPFKPD-VILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYA 157 (520)
Q Consensus 96 ~~~~PD-~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~ 157 (520)
+..+|| .++.+||+++++.......... ..+++. ..+ ..+.++||||+.++
T Consensus 33 ~~~~~~~l~v~~GD~~~~~~~~~~~~~~~----~~~~l~------~~g-~d~~~~GNHe~d~g 84 (252)
T cd00845 33 RAENENTLLLDAGDNFDGSPPSTATKGEA----NIELMN------ALG-YDAVTIGNHEFDYG 84 (252)
T ss_pred HhcCCCeEEEeCCccCCCccchhccCCcH----HHHHHH------hcC-CCEEeecccccccc
Confidence 334688 7789999998774322111111 223332 122 24567899998765
No 66
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.15 E-value=0.00018 Score=72.89 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=16.8
Q ss_pred HHHHHHHh-CCcEEEECCccCCCc
Q 010015 273 SNRLLDLI-KPVLVLSGHDHDQCT 295 (520)
Q Consensus 273 s~~LL~~l-~p~lVfsGH~H~~c~ 295 (520)
..+|.+.+ ..++||+||+|....
T Consensus 209 ~~~la~~~~~vD~IlgGHsH~~~~ 232 (277)
T cd07410 209 AYELAEEVPGIDAILTGHQHRRFP 232 (277)
T ss_pred HHHHHhcCCCCcEEEeCCCccccc
Confidence 45566665 348999999998653
No 67
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.11 E-value=0.00019 Score=72.34 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.4
Q ss_pred CCCEEE-EcCCcCCCC
Q 010015 99 KPDVIL-FLGDHFDGG 113 (520)
Q Consensus 99 ~PD~VI-~lGDL~d~G 113 (520)
+||.++ .+||++++.
T Consensus 50 ~~~~l~l~~GD~~~gs 65 (264)
T cd07411 50 NPNTLLLDGGDTWQGS 65 (264)
T ss_pred CCCeEEEeCCCccCCC
Confidence 789884 699999876
No 68
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.07 E-value=5.1e-06 Score=81.92 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=48.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKH 130 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~ 130 (520)
-+.++|||+||+-...+... ... +.....+..+.+.. ..+...+||.|+++||+++..... .++.+ +.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~--Gi~--~P~~~~~~~l~rl~-~li~~~~~d~vIi~GDl~h~~~~~--~~~~~----~~~ 83 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQ--GVM--VPGFQFREIIERAL-SIADKYGIEALIINGDLKHEFKKG--LEWRF----IRE 83 (225)
T ss_pred cCeEEEEeccCCCHHHHHhc--CCc--CChhHHHHHHHHHH-HHHhhcCCCEEEEcCccccccCCh--HHHHH----HHH
Confidence 35899999999854321100 000 00001111233332 345677899999999999765321 33333 333
Q ss_pred HhccccCCCCCCceEEEccCCCCC
Q 010015 131 IFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 131 if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
.+. ....+++.|+||||.
T Consensus 84 ~l~------~~~~~v~~V~GNHD~ 101 (225)
T TIGR00024 84 FIE------VTFRDLILIRGNHDA 101 (225)
T ss_pred HHH------hcCCcEEEECCCCCC
Confidence 333 234589999999994
No 69
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.04 E-value=5.1e-05 Score=73.89 Aligned_cols=51 Identities=31% Similarity=0.297 Sum_probs=32.1
Q ss_pred CCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCC
Q 010015 97 PFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 97 ~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
..+.|.++++||++|.|+. ..+..+.+.++..... ..+.+++.+.||||..
T Consensus 30 ~~~~d~lv~lGD~vdrG~~--~~~vl~~l~~l~~~~~------~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 30 IGGSTHLVQLGDIFDRGPD--VIEILWLLYKLEQEAA------KAGGKVHFLLGNHELM 80 (208)
T ss_pred cCCCcEEEEECCCcCCCcC--HHHHHHHHHHHHHHHH------hcCCeEEEeeCCCcHH
Confidence 3478999999999998852 2332222222221111 2356899999999964
No 70
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.02 E-value=0.00029 Score=70.65 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcc
Q 010015 99 KPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYA 157 (520)
Q Consensus 99 ~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~ 157 (520)
++++++..||++++....+...... ..+++. ..+..+ .++||||+.++
T Consensus 37 ~~~l~l~~GD~~~gs~~~~~~~g~~----~~~~ln------~~g~d~-~~~GNHefd~G 84 (257)
T cd07408 37 DNDLLVDAGDAIQGLPISDLDKGET----IIKIMN------AVGYDA-VTPGNHEFDYG 84 (257)
T ss_pred CCEEEEeCCCcCCCchhhhhcCCcH----HHHHHH------hcCCcE-EccccccccCC
Confidence 6899999999998753211100011 223332 233444 46799998765
No 71
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00027 Score=75.49 Aligned_cols=89 Identities=26% Similarity=0.311 Sum_probs=52.4
Q ss_pred CCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhh----CCCCCCEEEEcCCcCCCCCCC--CHHH
Q 010015 47 VDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASI----LPFKPDVILFLGDHFDGGPYL--SDEE 120 (520)
Q Consensus 47 ~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~----~~~~PD~VI~lGDL~d~G~~~--s~~e 120 (520)
....++++++||.|.+... |..+.+ .+-+.-.. ...+..++++.||++|+..-. ...+
T Consensus 222 ~~e~v~v~~isDih~GSk~---------------F~~~~f-~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~e 285 (481)
T COG1311 222 GDERVYVALISDIHRGSKE---------------FLEDEF-EKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEE 285 (481)
T ss_pred CCcceEEEEEeeeecccHH---------------HHHHHH-HHHHHHhcCCcccccceEEEEEecccccccccccCcccc
Confidence 4567999999999997321 111111 11110000 234567999999999964211 0111
Q ss_pred -----HHHHHHHHHHHhccccCCCCCCceEEEccCCCCCC
Q 010015 121 -----WQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 121 -----~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
-.++|+.|.+.|..- ...+.++..|||||-.
T Consensus 286 L~i~di~~qy~~~A~~L~~v----p~~I~v~i~PGnhDa~ 321 (481)
T COG1311 286 LVIADIYEQYEELAEFLDQV----PEHIKVFIMPGNHDAV 321 (481)
T ss_pred cccccchHHHHHHHHHHhhC----CCCceEEEecCCCCcc
Confidence 112466677777643 4688899999999954
No 72
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.90 E-value=1.2e-05 Score=75.49 Aligned_cols=42 Identities=31% Similarity=0.433 Sum_probs=29.3
Q ss_pred CCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCC
Q 010015 98 FKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 98 ~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
.++|.|+++||+++.+ ....+ . +.+. ..+.|++.|+||||..
T Consensus 41 ~~~d~vi~~GDl~~~~---~~~~~---~----~~l~------~~~~~~~~v~GNHD~~ 82 (168)
T cd07390 41 GPDDTVYHLGDFSFGG---KAGTE---L----ELLS------RLNGRKHLIKGNHDSS 82 (168)
T ss_pred CCCCEEEEeCCCCCCC---ChHHH---H----HHHH------hCCCCeEEEeCCCCch
Confidence 3689999999999987 33322 1 2222 2345899999999953
No 73
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.80 E-value=3.1e-05 Score=76.16 Aligned_cols=93 Identities=24% Similarity=0.326 Sum_probs=57.4
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHH
Q 010015 50 YDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFK 129 (520)
Q Consensus 50 ~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~ 129 (520)
.-+.+++||+||+=..++..+ . . .+.++.++. ..+.+...+...+|+.+|++||+..+.......|+.. ..+|.
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~-G-i--~lP~~~~~~-~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~-~~~f~ 92 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARR-G-I--NLPRYQTDR-ILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEE-VREFL 92 (235)
T ss_pred cCcEEEEEecccchhHHHHhc-C-c--ccCchhHHH-HHHHHHHHHHhcCCCEEEEcCccccccCccccccHHH-HHHHH
Confidence 357999999999744332100 0 0 011222222 2334444577889999999999998775444444443 45566
Q ss_pred HHhccccCCCCCCceEEEccCCCCCCc
Q 010015 130 HIFGLKSQDRFRDIRVHFLPGNHDNGY 156 (520)
Q Consensus 130 ~if~~~~~~~~~~iPv~~vpGNHDig~ 156 (520)
+.... . -+..+.||||-+.
T Consensus 93 ~~~~~-------~-evi~i~GNHD~~i 111 (235)
T COG1407 93 ELLDE-------R-EVIIIRGNHDNGI 111 (235)
T ss_pred HHhcc-------C-cEEEEeccCCCcc
Confidence 66542 1 4999999999543
No 74
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.80 E-value=0.00021 Score=66.08 Aligned_cols=46 Identities=28% Similarity=0.293 Sum_probs=31.4
Q ss_pred CCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCC
Q 010015 96 LPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHD 153 (520)
Q Consensus 96 ~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHD 153 (520)
+..+.|++|++||++.... ++++|..+ +... +...+|+|.+-|||.
T Consensus 23 k~gpFd~~ic~Gdff~~~~--~~~~~~~y-------~~g~---~~~pipTyf~ggn~~ 68 (150)
T cd07380 23 KKGPFDALLCVGDFFGDDE--DDEELEAY-------KDGS---KKVPIPTYFLGGNNP 68 (150)
T ss_pred ccCCeeEEEEecCccCCcc--chhhHHHH-------hcCC---ccCCCCEEEECCCCC
Confidence 5668999999999997652 22333332 2211 146789999999996
No 75
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.79 E-value=0.0013 Score=79.42 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=41.9
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEE-cCCcCCCCCCCCHHHHHHHHHH
Q 010015 49 GYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILF-LGDHFDGGPYLSDEEWQESLNR 127 (520)
Q Consensus 49 ~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~-lGDL~d~G~~~s~~e~~~~~~R 127 (520)
..++|++++|.|- ...+ . .++ ...++. ++..+||.+++ .||++++....+.......
T Consensus 659 ~~l~Il~~nD~Hg--~l~g------~-~r~---------~~~i~~-~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~--- 716 (1163)
T PRK09419 659 WELTILHTNDFHG--HLDG------A-AKR---------VTKIKE-VKEENPNTILVDAGDVYQGSLYSNLLKGLPV--- 716 (1163)
T ss_pred eEEEEEEEeeccc--CCCC------H-HHH---------HHHHHH-HHhhCCCeEEEecCCCCCCcchhhhcCChHH---
Confidence 4599999999992 1111 1 111 122222 23346888877 9999987632111111122
Q ss_pred HHHHhccccCCCCCCceEEEccCCCCCCcc
Q 010015 128 FKHIFGLKSQDRFRDIRVHFLPGNHDNGYA 157 (520)
Q Consensus 128 f~~if~~~~~~~~~~iPv~~vpGNHDig~~ 157 (520)
.+.+. ..+. -+.++||||+.++
T Consensus 717 -~~~ln------~lg~-d~~~~GNHEfd~g 738 (1163)
T PRK09419 717 -LKMMK------EMGY-DASTFGNHEFDWG 738 (1163)
T ss_pred -HHHHh------CcCC-CEEEecccccccC
Confidence 22222 1122 2559999998765
No 76
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=8.9e-05 Score=72.78 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=45.0
Q ss_pred CCCEEEEcCCcCCCCCCCCHHHHH----HHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHh
Q 010015 99 KPDVILFLGDHFDGGPYLSDEEWQ----ESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEF 174 (520)
Q Consensus 99 ~PD~VI~lGDL~d~G~~~s~~e~~----~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~F 174 (520)
+.|.++++||++|.= ..+.+|. +..+.+.+.- ..+.|+|+++||||.-. .++|.+.+
T Consensus 29 ~ad~lyilGDifd~w--~g~~~~~~~~~~V~~~l~~~a-------~~G~~v~~i~GN~Dfll----------~~~f~~~~ 89 (237)
T COG2908 29 QADALYILGDIFDGW--IGDDEPPQLHRQVAQKLLRLA-------RKGTRVYYIHGNHDFLL----------GKRFAQEA 89 (237)
T ss_pred cCcEEEEechhhhhh--hcCCcccHHHHHHHHHHHHHH-------hcCCeEEEecCchHHHH----------HHHHHhhc
Confidence 679999999999742 1122222 2223333332 46789999999999532 36788888
Q ss_pred CC-----cceEEEeCCEEEEEE
Q 010015 175 GK-----RNYRFTVGKVEFIVV 191 (520)
Q Consensus 175 g~-----~ny~~~ig~~~fV~L 191 (520)
|. ..-..++-|-.++++
T Consensus 90 g~~~l~~~~~~~~l~g~~~Ll~ 111 (237)
T COG2908 90 GGMTLLPDPIVLDLYGKRILLA 111 (237)
T ss_pred CceEEcCcceeeeecCcEEEEE
Confidence 82 222344445455554
No 77
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.76 E-value=0.0027 Score=64.83 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=15.6
Q ss_pred HHHHhhccCCCCCeEEEEccCCCC
Q 010015 211 FVKNVSIDFQLLPRVLLTHIPLYR 234 (520)
Q Consensus 211 wL~~ll~~~~~~p~ILltH~PL~~ 234 (520)
|+.+.+.+....-+|+++|..+..
T Consensus 178 ~v~~~l~~~~~DvIIvlsH~G~~~ 201 (282)
T cd07407 178 WFQDAINNEDVDLILVLGHMPVRD 201 (282)
T ss_pred HHHHHHHhcCCCEEEEEeCCCCCC
Confidence 655544423345689999998764
No 78
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.76 E-value=0.00048 Score=63.26 Aligned_cols=81 Identities=27% Similarity=0.412 Sum_probs=43.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCC-CEEEEcCCcCCCCCCCCHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKP-DVILFLGDHFDGGPYLSDEEWQESLNRFK 129 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~P-D~VI~lGDL~d~G~~~s~~e~~~~~~Rf~ 129 (520)
..+-++||+|++...-....|-+ ..+++ |..+-..|.. ..+| |.+-++||++.+. +++ ..+.
T Consensus 4 ~mmyfisDtHfgh~nvi~~~pfs---n~~eh--d~vil~N~nn---tv~p~D~lwhLGDl~~~~---n~~---~~a~--- 66 (186)
T COG4186 4 TMMYFISDTHFGHKNVISMRPFS---NPDEH--DEVILSNWNN---TVGPDDVLWHLGDLSSGA---NRE---RAAG--- 66 (186)
T ss_pred eEEEEecccccCCcceeecCCCC---CHHHH--hHHHHHhHHh---cCCccceEEEeccccccc---chh---hHHH---
Confidence 45789999999876433222211 11221 2223333433 2333 7889999999765 322 1222
Q ss_pred HHhccccCCCCCCceEEEccCCCCC
Q 010015 130 HIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 130 ~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
.|++ .++-....|+||||-
T Consensus 67 ~Ile------rLnGrkhlv~GNhDk 85 (186)
T COG4186 67 LILE------RLNGRKHLVPGNHDK 85 (186)
T ss_pred HHHH------HcCCcEEEeeCCCCC
Confidence 2332 223345999999993
No 79
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.75 E-value=2.2e-06 Score=90.20 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=92.9
Q ss_pred cccCCCccceeeccccccceeecccccCCCcccccCCCCcccccCceeccccccCCccccceeeccc--------CCCCC
Q 010015 403 EKTEDENCEYEMVWDAEGSMHLVRKATNTPITRAKDTSGTMERGNAVMRHTAKKGNAQEVEISMNVD--------DPMTN 474 (520)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 474 (520)
|+.|..+.|+++.||+|++++|+|+..+...... +.++-.+.++++. ..+.+.+.+=.....+.| +++.+
T Consensus 258 ~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~-~~~~~~~k~~~~~-~g~~~~tv~~~s~~~~~~~~~i~~~~~~~~~ 335 (410)
T KOG3662|consen 258 ELNENIEREFDLSGDDEDHCSLLKLNYKLVVGGH-DHKEYNDKHASMS-SGALEYTVLLLSLRFGQDFNMIFGGIFPDIK 335 (410)
T ss_pred HHhhhhhhhcccccccccceEEeecccccccCCc-Ccccccccccccc-ccccccchhhhhhhccccHHHHhhccccceE
Confidence 4556789999999999999999998877777777 8899999999998 888888777766665555 22222
Q ss_pred CCCCCCCchhHHHHHHHHH-HhheeeEeEEechhHHHHHhhccccc
Q 010015 475 LPPRTSKSTAKFIIHRLVR-MFRMLTVIAVVNIPLYMMLLFKDWID 519 (520)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (520)
-.++++++.++||.+| .++++.++|++++|.|+|+.+|||+.
T Consensus 336 ---~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~ 378 (410)
T KOG3662|consen 336 ---LVSSPRTELVTRRYIWKAISQIIFAAALTFTIFFKLITKDYMG 378 (410)
T ss_pred ---EEEecCCCceEEEeeHHHHHHHHHHHHHhhhHHHhhhhhhhhc
Confidence 3455778899999999 89999999999999999999999975
No 80
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.68 E-value=0.0017 Score=72.32 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=15.3
Q ss_pred HHHHHhC---CcEEEECCccCCC
Q 010015 275 RLLDLIK---PVLVLSGHDHDQC 294 (520)
Q Consensus 275 ~LL~~l~---p~lVfsGH~H~~c 294 (520)
.|.+.+. .++|+.||+|...
T Consensus 236 ~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 236 EMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred HHHHhCCccCceEEEeCCCCccc
Confidence 4666664 5899999999753
No 81
>PHA02239 putative protein phosphatase
Probab=97.68 E-value=7.6e-05 Score=74.10 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=43.3
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCC-CCCEEEEcCCcCCCCCCCCHHHHHHHHHHHH
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPF-KPDVILFLGDHFDGGPYLSDEEWQESLNRFK 129 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~-~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~ 129 (520)
+|+++|||+|-. +. . +.+.+..+.... ..|.++++||++|.|+.. . +.++++.
T Consensus 1 m~~~~IsDIHG~----~~--------~---------l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s-~----~v~~~l~ 54 (235)
T PHA02239 1 MAIYVVPDIHGE----YQ--------K---------LLTIMDKINNERKPEETIVFLGDYVDRGKRS-K----DVVNYIF 54 (235)
T ss_pred CeEEEEECCCCC----HH--------H---------HHHHHHHHhhcCCCCCEEEEecCcCCCCCCh-H----HHHHHHH
Confidence 378999999931 10 1 233333332222 359999999999988532 2 2334444
Q ss_pred HHhccccCCCCCCceEEEccCCCCC
Q 010015 130 HIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 130 ~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
+... ...+++.++||||.
T Consensus 55 ~~~~-------~~~~~~~l~GNHE~ 72 (235)
T PHA02239 55 DLMS-------NDDNVVTLLGNHDD 72 (235)
T ss_pred HHhh-------cCCCeEEEECCcHH
Confidence 4332 23478999999995
No 82
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.61 E-value=0.0023 Score=65.18 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=14.5
Q ss_pred HHHHHhC-CcEEEECCccCCC
Q 010015 275 RLLDLIK-PVLVLSGHDHDQC 294 (520)
Q Consensus 275 ~LL~~l~-p~lVfsGH~H~~c 294 (520)
+|.+.+. .++|++||+|...
T Consensus 199 ~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 199 EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred HHHHcCCCCcEEEeCCcCccc
Confidence 3455553 4899999999864
No 83
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.50 E-value=0.0088 Score=61.11 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=15.0
Q ss_pred HHHHHhC--CcEEEECCccCCCc
Q 010015 275 RLLDLIK--PVLVLSGHDHDQCT 295 (520)
Q Consensus 275 ~LL~~l~--p~lVfsGH~H~~c~ 295 (520)
+++..+. .++|++||+|....
T Consensus 221 ~l~~~~~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 221 DIVNRLDPDVDVVFAGHTHQAYN 243 (288)
T ss_pred HHHhhcCCCCCEEEeCccCcccc
Confidence 3445443 49999999998754
No 84
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=97.46 E-value=0.0086 Score=64.74 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=62.7
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHH
Q 010015 48 DGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNR 127 (520)
Q Consensus 48 ~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~R 127 (520)
++.+||++-+|+|++=...-+-+.. +.+. .+...+ .+.+..+.|+|+..||||.+.+. +.+......+-
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~------DSf~---tFeEIl-~iA~e~~VDmiLlGGDLFHeNkP-Sr~~L~~~i~l 79 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGD------DSFV---TFEEIL-EIAQENDVDMILLGGDLFHENKP-SRKTLHRCLEL 79 (646)
T ss_pred ccceEEEEeecCccccccCCccccc------chHH---HHHHHH-HHHHhcCCcEEEecCcccccCCc-cHHHHHHHHHH
Confidence 4679999999999963222111100 1111 022222 23467789999999999987644 23322222333
Q ss_pred HHHHh-cc-ccC------------------------CCCCCceEEEccCCCCCCcccccCCCH---HHHHHHHHHhCCc
Q 010015 128 FKHIF-GL-KSQ------------------------DRFRDIRVHFLPGNHDNGYAALLSHKP---EIVRRYEKEFGKR 177 (520)
Q Consensus 128 f~~if-~~-~~~------------------------~~~~~iPv~~vpGNHDig~~~~~~~~~---~~~~rf~~~Fg~~ 177 (520)
+++.. .. |.+ -..-.+||+.|-||||..-+.. ..++ -...-+-++||..
T Consensus 80 LRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~-~lsalDIL~~~GLVNyFGk~ 157 (646)
T KOG2310|consen 80 LRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDG-RLSALDILSAAGLVNYFGKV 157 (646)
T ss_pred HHHHccCCCceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCcccc-ccchHHHHHhcchhhhhccc
Confidence 33221 11 100 0135799999999999643321 1111 1122355688863
No 85
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.24 E-value=0.01 Score=71.78 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=17.2
Q ss_pred HHHHHHHhC-CcEEEECCccCCCc
Q 010015 273 SNRLLDLIK-PVLVLSGHDHDQCT 295 (520)
Q Consensus 273 s~~LL~~l~-p~lVfsGH~H~~c~ 295 (520)
...|.+.+. .++|+.||+|....
T Consensus 259 ~~~la~~~~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 259 VYDLAEKTKGIDAIVAGHQHGLFP 282 (1163)
T ss_pred HHHHHHhCCCCcEEEeCCCccccc
Confidence 445666664 48999999999754
No 86
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.23 E-value=0.033 Score=64.37 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=14.8
Q ss_pred HHHHhC-CcEEEECCccCCCc
Q 010015 276 LLDLIK-PVLVLSGHDHDQCT 295 (520)
Q Consensus 276 LL~~l~-p~lVfsGH~H~~c~ 295 (520)
.++.+. .++|++||+|....
T Consensus 271 ~l~~v~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 271 YLTEVPGVDAVLMGHSHTEVK 291 (780)
T ss_pred HHhcCCCCCEEEECCCCCccc
Confidence 345553 58999999998754
No 87
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.21 E-value=0.00065 Score=65.86 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHH
Q 010015 52 KVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHI 131 (520)
Q Consensus 52 rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~i 131 (520)
|+++|||+|= . + . .+.+.+..+....++|.++++||++|.|... .+ .++.+.
T Consensus 2 ri~~isDiHg--~--~-----------~------~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~--~~---~~~~l~-- 53 (207)
T cd07424 2 RDFVVGDIHG--H--Y-----------S------LLQKALDAVGFDPARDRLISVGDLIDRGPES--LA---CLELLL-- 53 (207)
T ss_pred CEEEEECCCC--C--H-----------H------HHHHHHHHcCCCCCCCEEEEeCCcccCCCCH--HH---HHHHHh--
Confidence 6899999992 1 1 0 1233443332234699999999999988431 11 222121
Q ss_pred hccccCCCCCCceEEEccCCCCC
Q 010015 132 FGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 132 f~~~~~~~~~~iPv~~vpGNHDi 154 (520)
. .+++.|.||||.
T Consensus 54 --------~--~~~~~v~GNhe~ 66 (207)
T cd07424 54 --------E--PWFHAVRGNHEQ 66 (207)
T ss_pred --------c--CCEEEeECCChH
Confidence 1 258899999995
No 88
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.19 E-value=0.00073 Score=68.69 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=41.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHH
Q 010015 52 KVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHI 131 (520)
Q Consensus 52 rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~i 131 (520)
++++|+|+|=. + + .+.+.+..+.-..++|.++++||++|.|+.. .+ .++.+.+
T Consensus 2 ~~~vIGDIHG~----~-----------~------~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s--~~---vl~~l~~- 54 (275)
T PRK00166 2 ATYAIGDIQGC----Y-----------D------ELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS--LE---VLRFVKS- 54 (275)
T ss_pred cEEEEEccCCC----H-----------H------HHHHHHHhcCCCCCCCEEEEeCCccCCCcCH--HH---HHHHHHh-
Confidence 68999999921 1 1 1233333332234789999999999998531 11 2222322
Q ss_pred hccccCCCCCCceEEEccCCCCC
Q 010015 132 FGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 132 f~~~~~~~~~~iPv~~vpGNHDi 154 (520)
.+.+++.|.||||.
T Consensus 55 ---------l~~~~~~VlGNHD~ 68 (275)
T PRK00166 55 ---------LGDSAVTVLGNHDL 68 (275)
T ss_pred ---------cCCCeEEEecChhH
Confidence 23468899999996
No 89
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.19 E-value=0.017 Score=64.51 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=25.8
Q ss_pred CCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcc
Q 010015 100 PDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYA 157 (520)
Q Consensus 100 PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~ 157 (520)
.-+++..||.+++....+-..-... .+++. ..+ -=+.++||||+.++
T Consensus 50 n~l~ldaGD~~~gs~~~~~~~g~~~----i~~~N------~~g-~Da~~lGNHEFd~G 96 (550)
T TIGR01530 50 NALVLHAGDAIIGTLYFTLFGGRAD----AALMN------AAG-FDFFTLGNHEFDAG 96 (550)
T ss_pred CeEEEECCCCCCCccchhhcCCHHH----HHHHh------ccC-CCEEEeccccccCC
Confidence 4578899999987643211100111 12222 111 13678999998776
No 90
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.11 E-value=0.022 Score=58.09 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=15.1
Q ss_pred HHHHHh---CCcEEEECCccCCC
Q 010015 275 RLLDLI---KPVLVLSGHDHDQC 294 (520)
Q Consensus 275 ~LL~~l---~p~lVfsGH~H~~c 294 (520)
+|.+.+ +.++|+.||+|...
T Consensus 200 ~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 200 EMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred HHHHhcCCCCCCEEEeCCCCccc
Confidence 455555 35999999999865
No 91
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.08 E-value=0.019 Score=59.46 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=15.2
Q ss_pred HHHHHhC-CcEEEECCccCCC
Q 010015 275 RLLDLIK-PVLVLSGHDHDQC 294 (520)
Q Consensus 275 ~LL~~l~-p~lVfsGH~H~~c 294 (520)
.|.+.+. .++|+.||+|..-
T Consensus 225 ~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 225 ALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred HHHhcCCCCCEEEeCCCCccC
Confidence 3556554 4999999999874
No 92
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0089 Score=66.07 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=77.9
Q ss_pred CCceEEEEEeCCCCCCC-CCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCH-HHHHHHH
Q 010015 48 DGYDKVAVIADPQIMDK-TSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSD-EEWQESL 125 (520)
Q Consensus 48 ~~~~rilvISDpHL~~~-~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~-~e~~~~~ 125 (520)
...++|++.+|.|--=. +.+...... ...+.+. ...++......+..++|-.||++++..-.+. .....
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~-~~g~~~~------~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~-- 94 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDT-DGGLARI------ATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEP-- 94 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcc-cccHHHH------HHHHHHHHhhcCCeEEEeCCcccCCccccccccCCCh--
Confidence 35699999999995322 122111100 0000111 1111122233346789999999998532221 11111
Q ss_pred HHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHHHhC-------------------CcceEEEeCCE
Q 010015 126 NRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEKEFG-------------------KRNYRFTVGKV 186 (520)
Q Consensus 126 ~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~~Fg-------------------~~ny~~~ig~~ 186 (520)
..+++.. .+ .=+...|||++.++. +.+.++.+... +++..++.++.
T Consensus 95 --~~~~mN~------m~-yDa~tiGNHEFd~g~------~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~ 159 (517)
T COG0737 95 --TVDLLNA------LG-YDAMTLGNHEFDYGL------EALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGV 159 (517)
T ss_pred --HHHHHhh------cC-CcEEeecccccccCH------HHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCe
Confidence 2223221 11 126788999998763 23344433211 23445666765
Q ss_pred --EEEEEeCCCCCCCC--C---C-CC---CHHHHHHHHHhhccCCCCCeEEEEccCCCCC
Q 010015 187 --EFIVVDAQTLDGHP--E---G-NL---AAATWDFVKNVSIDFQLLPRVLLTHIPLYRR 235 (520)
Q Consensus 187 --~fV~LDS~~l~g~~--~---g-~i---~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~ 235 (520)
-+|++-+....... . + .+ -+..-+|++++..+. -.-+|+++|.+....
T Consensus 160 KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~-vD~iI~LsH~G~~~d 218 (517)
T COG0737 160 KIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEG-VDVIIALSHLGIEDD 218 (517)
T ss_pred EEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcC-CCEEEEEeccCcCcc
Confidence 45666543222111 1 1 11 122234555544432 455899999998874
No 93
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=96.85 E-value=0.0018 Score=63.49 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHH
Q 010015 52 KVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHI 131 (520)
Q Consensus 52 rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~i 131 (520)
|+.+|||+|=. + + .|.+.++.+....+.|.++++||++|.|+.. .+ .++.+.+
T Consensus 18 ri~vigDIHG~----~-----------~------~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s--~~---vl~~l~~- 70 (218)
T PRK11439 18 HIWLVGDIHGC----F-----------E------QLMRKLRHCRFDPWRDLLISVGDLIDRGPQS--LR---CLQLLEE- 70 (218)
T ss_pred eEEEEEcccCC----H-----------H------HHHHHHHhcCCCcccCEEEEcCcccCCCcCH--HH---HHHHHHc-
Confidence 89999999932 1 1 1334444432234679999999999999532 11 2222221
Q ss_pred hccccCCCCCCceEEEccCCCCC
Q 010015 132 FGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 132 f~~~~~~~~~~iPv~~vpGNHDi 154 (520)
. .++.|.||||.
T Consensus 71 ---------~--~~~~v~GNHE~ 82 (218)
T PRK11439 71 ---------H--WVRAVRGNHEQ 82 (218)
T ss_pred ---------C--CceEeeCchHH
Confidence 1 35789999994
No 94
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.72 E-value=0.078 Score=53.38 Aligned_cols=122 Identities=12% Similarity=0.096 Sum_probs=61.1
Q ss_pred HHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHH
Q 010015 88 RRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIV 167 (520)
Q Consensus 88 ~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~ 167 (520)
.+.+.......++|++|.-||.+.+|...+++. ++.+. ..++-++.+ |||++..+.. ...+
T Consensus 18 ~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~----~~~L~----------~~G~D~iTl-GNH~fD~gel----~~~l 78 (255)
T cd07382 18 KEHLPKLKKEYKIDFVIANGENAAGGKGITPKI----AKELL----------SAGVDVITM-GNHTWDKKEI----LDFI 78 (255)
T ss_pred HHHHHHHHHHCCCCEEEECCccccCCCCCCHHH----HHHHH----------hcCCCEEEe-cccccCcchH----HHHH
Confidence 333444445668999999999998885555442 22122 234455555 9999866521 1111
Q ss_pred HHHHH----------HhCCcceEEEeCCEEEEEEeCCCCCCCCCCCCC-HHHHHHHHHhhccCCCCCeEEEEcc
Q 010015 168 RRYEK----------EFGKRNYRFTVGKVEFIVVDAQTLDGHPEGNLA-AATWDFVKNVSIDFQLLPRVLLTHI 230 (520)
Q Consensus 168 ~rf~~----------~Fg~~ny~~~ig~~~fV~LDS~~l~g~~~g~i~-~~ql~wL~~ll~~~~~~p~ILltH~ 230 (520)
+.... ..|..+..++.++.++-+++-........-.-. +..-+.++++.. ...-+|+++|.
T Consensus 79 ~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~--~~D~IIV~~H~ 150 (255)
T cd07382 79 DEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKE--EADIIFVDFHA 150 (255)
T ss_pred hcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhc--CCCEEEEEECC
Confidence 11100 112234556778887666654322222110001 111123333322 23468999998
No 95
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=96.72 E-value=0.0039 Score=62.81 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCC
Q 010015 88 RRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 88 ~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
.+.+..+....+.|.++++||++|.|+.. .+ .++.+.+ .+..+..|.||||..
T Consensus 15 ~~LL~~i~~~~~~D~Li~lGDlVdRGp~s--~e---vl~~l~~----------l~~~v~~VlGNHD~~ 67 (257)
T cd07422 15 QRLLEKINFDPAKDRLWLVGDLVNRGPDS--LE---TLRFVKS----------LGDSAKTVLGNHDLH 67 (257)
T ss_pred HHHHHhcCCCCCCCEEEEecCcCCCCcCH--HH---HHHHHHh----------cCCCeEEEcCCchHH
Confidence 34444433334679999999999998531 11 2332322 223688999999963
No 96
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=96.69 E-value=0.0032 Score=61.72 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=40.4
Q ss_pred EEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHH
Q 010015 52 KVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHI 131 (520)
Q Consensus 52 rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~i 131 (520)
|+++|||+|=. + . .+.+.+..+....+.|.++++||++|.|+.. .+ .++.+.
T Consensus 16 ri~visDiHg~----~-----------~------~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~--~~---~l~~l~-- 67 (218)
T PRK09968 16 HIWVVGDIHGE----Y-----------Q------LLQSRLHQLSFCPETDLLISVGDNIDRGPES--LN---VLRLLN-- 67 (218)
T ss_pred eEEEEEeccCC----H-----------H------HHHHHHHhcCCCCCCCEEEECCCCcCCCcCH--HH---HHHHHh--
Confidence 89999999931 1 1 1233443332245789999999999988532 22 222221
Q ss_pred hccccCCCCCCceEEEccCCCCC
Q 010015 132 FGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 132 f~~~~~~~~~~iPv~~vpGNHDi 154 (520)
. ..++.|.||||.
T Consensus 68 --------~--~~~~~v~GNHE~ 80 (218)
T PRK09968 68 --------Q--PWFISVKGNHEA 80 (218)
T ss_pred --------h--CCcEEEECchHH
Confidence 1 136799999994
No 97
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=96.66 E-value=0.018 Score=56.21 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=68.9
Q ss_pred CCCCCCEEEEcCCcCCCCC-------------------CCCHHHHHHHHHHHHHHhccccC-CCCCCceEEEccCCCCCC
Q 010015 96 LPFKPDVILFLGDHFDGGP-------------------YLSDEEWQESLNRFKHIFGLKSQ-DRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 96 ~~~~PD~VI~lGDL~d~G~-------------------~~s~~e~~~~~~Rf~~if~~~~~-~~~~~iPv~~vpGNHDig 155 (520)
...+||++|++||.+.... ..+.++|.+ ++...+..+.- .....+|++.+.-+||++
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~Y~~~~~~p~~~~~~~~~p~~~iwDDHDi~ 102 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRE---RYRQYRSDPDLQRLLAQVPTIGIWDDHDIG 102 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHH---HHHHHcCCHHHHHHhhcCCEEEeccccccc
Confidence 5778999999999986542 123334433 33333221100 003568999999999997
Q ss_pred cccccC--------C----CHHHHHHHHHHhCC------------cceEEEeCCE-EEEEEeCCCCCCCCCCCCCHHHHH
Q 010015 156 YAALLS--------H----KPEIVRRYEKEFGK------------RNYRFTVGKV-EFIVVDAQTLDGHPEGNLAAATWD 210 (520)
Q Consensus 156 ~~~~~~--------~----~~~~~~rf~~~Fg~------------~ny~~~ig~~-~fV~LDS~~l~g~~~g~i~~~ql~ 210 (520)
.+.... . .....+.|..+.+. .++++.+|.. .|++||+...-..-. . ...+.+
T Consensus 103 ~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~~~lD~R~~Rd~W~-~-~~~er~ 180 (228)
T cd07389 103 DNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDLILLDTRTYRDSWD-G-YPAERE 180 (228)
T ss_pred cccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceEEEEeccccccccc-c-cHHHHH
Confidence 543211 0 01123334433321 2456888987 999999975431111 1 222334
Q ss_pred HHHHhhccCCCCCeEEEE
Q 010015 211 FVKNVSIDFQLLPRVLLT 228 (520)
Q Consensus 211 wL~~ll~~~~~~p~ILlt 228 (520)
.|-+++.....+.+|+++
T Consensus 181 ~l~~~~~~~~~~~vv~lS 198 (228)
T cd07389 181 RLLDLLAKRKIKNVVFLS 198 (228)
T ss_pred HHHHHHHHhCCCCeEEEe
Confidence 444443344445555554
No 98
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.014 Score=62.46 Aligned_cols=206 Identities=16% Similarity=0.127 Sum_probs=112.6
Q ss_pred CCCCCCEEEEcCCcCCCCCCC----------C--------HH--HHHHHHHHHHHHhc-cccCCCCCCceEEEccCCCCC
Q 010015 96 LPFKPDVILFLGDHFDGGPYL----------S--------DE--EWQESLNRFKHIFG-LKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 96 ~~~~PD~VI~lGDL~d~G~~~----------s--------~~--e~~~~~~Rf~~if~-~~~~~~~~~iPv~~vpGNHDi 154 (520)
...+||++|++||.+.+.... . .+ ..++|..|+..... .+.+.-....|+++..-.|++
T Consensus 165 a~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv 244 (522)
T COG3540 165 AKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEV 244 (522)
T ss_pred HhcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccc
Confidence 456799999999999643211 0 00 01222233322110 000001357899999999998
Q ss_pred CcccccCCCH---------------HHHHHHHHHhC----------CcceEEEeCCE-EEEEEeCCCCC------CCC--
Q 010015 155 GYAALLSHKP---------------EIVRRYEKEFG----------KRNYRFTVGKV-EFIVVDAQTLD------GHP-- 200 (520)
Q Consensus 155 g~~~~~~~~~---------------~~~~rf~~~Fg----------~~ny~~~ig~~-~fV~LDS~~l~------g~~-- 200 (520)
..+....... ...+.|.++.. ..+.+|.+|+. .|.+||+.++- +..
T Consensus 245 ~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~ 324 (522)
T COG3540 245 ANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPP 324 (522)
T ss_pred cccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcc
Confidence 6543211111 12333443321 12457889986 78899987664 111
Q ss_pred ---------CCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHH
Q 010015 201 ---------EGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEE 271 (520)
Q Consensus 201 ---------~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e 271 (520)
..-+.++|.+||+.-+...+..+.||.+-+|+-...-+. ++..++..... ..-+|+. .
T Consensus 325 ~~q~~~~~~~~mlG~~QeqWLk~~L~~SkatWnVia~q~~~~~~~~d~-~~a~~~~~a~~-----D~wdGy~-------~ 391 (522)
T COG3540 325 NCQAVAGSAATMLGEQQEQWLKRGLGASKATWNVIAQQMPLGLVVFDG-SPATEGQEANA-----DGWDGYP-------A 391 (522)
T ss_pred hhhhhhCccccchhhHHHHHHHhhhhhcchhhhhhhhhcceeEeecCC-CccccCccccc-----cCcCCCc-------c
Confidence 123678899999998877778888999999987643211 11111111000 0012221 2
Q ss_pred HHHHHHHHhC-----CcEEEECCccCCCcEEeccC------CCCeEEEEeCcee
Q 010015 272 SSNRLLDLIK-----PVLVLSGHDHDQCTVSHESN------HEHIKEHTVGTIS 314 (520)
Q Consensus 272 ~s~~LL~~l~-----p~lVfsGH~H~~c~~~h~~~------~~~i~Eitv~S~S 314 (520)
.+++||..++ +.++|+|++|...-.....+ ....-|+.++|++
T Consensus 392 ~RerLl~fi~~~~~~N~V~LtgDvH~~wA~~l~~d~a~~~~~~~f~Efv~tsi~ 445 (522)
T COG3540 392 GRERLLRFIADRKIRNTVVLTGDVHYSWAHDLDPDFAQFEDFAPFWEFVSTSIN 445 (522)
T ss_pred cHHHHHHHHHhcCCCCcEEEechhHHHHHhhcCcchhcccccCceeeEeeccCc
Confidence 3567887774 37999999997543211111 1234577777765
No 99
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.58 E-value=0.0049 Score=61.00 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=28.1
Q ss_pred CCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCC
Q 010015 99 KPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 99 ~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
+.|.++++||++|.|+. ..+ .++.+.++.. +..++.|.||||.
T Consensus 37 ~~d~lv~lGDlIDrG~~--s~e---vl~~l~~l~~--------~~~~~~v~GNHE~ 79 (234)
T cd07423 37 EGRRAVFVGDLVDRGPD--SPE---VLRLVMSMVA--------AGAALCVPGNHDN 79 (234)
T ss_pred CCCEEEEECCccCCCCC--HHH---HHHHHHHHhh--------CCcEEEEECCcHH
Confidence 46999999999998853 222 2333333221 1247899999994
No 100
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.58 E-value=0.0074 Score=61.67 Aligned_cols=48 Identities=29% Similarity=0.486 Sum_probs=28.6
Q ss_pred CCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCc
Q 010015 99 KPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGY 156 (520)
Q Consensus 99 ~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~ 156 (520)
..+.+||+||++|.|+. ..+ .++.+...-.. .....++++.||||..+
T Consensus 34 ~~~~iVfLGDyVDRGPd--S~e---Vld~L~~l~~~-----~~~~~vv~LrGNHE~~~ 81 (304)
T cd07421 34 ASALVIFLGDYCDRGPE--TRK---VIDFLISLPEK-----HPKQRHVFLCGNHDFAF 81 (304)
T ss_pred CCcEEEEeCCcCCCCCC--HHH---HHHHHHHhhhc-----ccccceEEEecCChHHH
Confidence 46789999999999953 222 22222221110 11225789999999543
No 101
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.55 E-value=0.094 Score=59.45 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=14.2
Q ss_pred HHHHhC-CcEEEECCccCCC
Q 010015 276 LLDLIK-PVLVLSGHDHDQC 294 (520)
Q Consensus 276 LL~~l~-p~lVfsGH~H~~c 294 (520)
.++.+. .++|++||+|...
T Consensus 222 ~l~~v~gID~Il~GHsH~~~ 241 (626)
T TIGR01390 222 YLTKVPGIDAVLFGHSHAVF 241 (626)
T ss_pred HHhcCCCCCEEEcCCCCccC
Confidence 345553 4899999999864
No 102
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.49 E-value=0.0035 Score=60.99 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=31.1
Q ss_pred CCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCC
Q 010015 96 LPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNG 155 (520)
Q Consensus 96 ~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig 155 (520)
....+|.+|++||++|.|+.. . +.++.+..... . ..+++.+.||||..
T Consensus 21 ~~~~~d~li~lGD~vdrg~~~-~----~~l~~l~~~~~------~-~~~~~~l~GNHe~~ 68 (225)
T cd00144 21 GFPPNDKLIFLGDYVDRGPDS-V----EVIDLLLALKI------L-PDNVILLRGNHEDM 68 (225)
T ss_pred CCCCCCEEEEECCEeCCCCCc-H----HHHHHHHHhcC------C-CCcEEEEccCchhh
Confidence 335789999999999988532 1 12222222211 1 45799999999963
No 103
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.46 E-value=0.15 Score=57.97 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=13.6
Q ss_pred HHHhC-CcEEEECCccCCC
Q 010015 277 LDLIK-PVLVLSGHDHDQC 294 (520)
Q Consensus 277 L~~l~-p~lVfsGH~H~~c 294 (520)
+..+. .++|+.||+|...
T Consensus 246 l~~v~gID~Il~GHsH~~~ 264 (649)
T PRK09420 246 LSEVPGIDAIMFGHSHAVF 264 (649)
T ss_pred HhcCCCCCEEEeCCCCccC
Confidence 45553 4999999999864
No 104
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.32 E-value=0.16 Score=58.98 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=12.1
Q ss_pred CEEEEcCCcCCCCCC
Q 010015 101 DVILFLGDHFDGGPY 115 (520)
Q Consensus 101 D~VI~lGDL~d~G~~ 115 (520)
-+++..||++++...
T Consensus 161 tLllD~GD~iQGSpl 175 (814)
T PRK11907 161 VVLVDNGDTIQGTPL 175 (814)
T ss_pred EEEEecCCCCCCCcc
Confidence 478899999988654
No 105
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.25 E-value=0.0097 Score=58.53 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=29.0
Q ss_pred CCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCC
Q 010015 99 KPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 99 ~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
..|.+||+||++|.|+.. . + .++.+.+.-. .-.++.|.||||.
T Consensus 33 ~~d~lvflGD~IDRGp~S-~-~---vl~~l~~l~~--------~~~~~~l~GNHE~ 75 (222)
T cd07413 33 PERQVVFLGDLIDRGPEI-R-E---LLEIVKSMVD--------AGHALAVMGNHEF 75 (222)
T ss_pred CCCEEEEeCcccCCCCCH-H-H---HHHHHHHhhc--------CCCEEEEEccCcH
Confidence 468999999999999642 2 2 3344444321 1258889999994
No 106
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.15 E-value=0.0091 Score=59.93 Aligned_cols=208 Identities=17% Similarity=0.163 Sum_probs=107.5
Q ss_pred CCCEEEEcCCcCCCCCC--CCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHHH----
Q 010015 99 KPDVILFLGDHFDGGPY--LSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYEK---- 172 (520)
Q Consensus 99 ~PD~VI~lGDL~d~G~~--~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~~---- 172 (520)
.|=-++.-||++|+|.. ..+.| ..+++.|..-++...+-..-.+|||.-.||||..-... +..++-|++
T Consensus 126 ~plGlV~ggDitddgggq~~qprE-g~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gp----ph~~DWyRrElrd 200 (392)
T COG5555 126 CPLGLVEGGDITDDGGGQSFQPRE-GNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGP----PHSLDWYRRELRD 200 (392)
T ss_pred CceeEEeecceeccCCCcccCccc-cchhhchHhhhccCCCCceeeeeeEeccCchhhcccCC----CCchhHHHHHHHH
Confidence 35567888999987632 11111 11233343333322222235689999999999753321 111121211
Q ss_pred ----------HhCC-----------cceEEEeCCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHhh--ccCCCCCeEEEEc
Q 010015 173 ----------EFGK-----------RNYRFTVGKVEFIVVDAQTLDGHPEGNLAAATWDFVKNVS--IDFQLLPRVLLTH 229 (520)
Q Consensus 173 ----------~Fg~-----------~ny~~~ig~~~fV~LDS~~l~g~~~g~i~~~ql~wL~~ll--~~~~~~p~ILltH 229 (520)
.|-+ ..|+++.|+++++-.-.. .|+.. .-....+-|++.-+ ....++|++||.|
T Consensus 201 yve~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf--~Gd~~-~ga~sslpwlk~dl~~~aadgrpv~Lfqh 277 (392)
T COG5555 201 YVENYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRF--IGDAE-PGANSSLPWLKVDLIYSAADGRPVYLFQH 277 (392)
T ss_pred HHHhhcCcCcccCCCCCcccccccchheeccccceeEEEEeee--ccccC-CCccccCcceeccceeeccCCCceeehhh
Confidence 1111 247889999988887653 23321 11233456777733 3445899999999
Q ss_pred cCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhC---CcEEEECCccCCCcEEeccCCCCeE
Q 010015 230 IPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIK---PVLVLSGHDHDQCTVSHESNHEHIK 306 (520)
Q Consensus 230 ~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~---p~lVfsGH~H~~c~~~h~~~~~~i~ 306 (520)
+---.-+...-+| .+..+| ..|..-..+.+......|+..++ ...+|.||-|+.--.. +
T Consensus 278 yGwdtfsteawdp--AsrT~D--------d~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~may--------r 339 (392)
T COG5555 278 YGWDTFSTEAWDP--ASRTLD--------DTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFNMAY--------R 339 (392)
T ss_pred hCccceeccccCc--hhcccc--------cCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccceee--------e
Confidence 8433221111111 111112 12222233344455667777765 4789999999873221 1
Q ss_pred EEEeCceeecCCCCCCcEEEEEEEcCC
Q 010015 307 EHTVGTISWQQGNLYPSFRLLSASNSA 333 (520)
Q Consensus 307 Eitv~S~S~~~g~~~Pgf~llsl~~~~ 333 (520)
-+.++.+.-.... .-||.+..++++.
T Consensus 340 r~~ld~fkpkaa~-~Ggfav~rvt~~~ 365 (392)
T COG5555 340 RYDLDAFKPKAAV-RGGFAVGRVTNPW 365 (392)
T ss_pred ecCccccCccchh-hcceeEEEecCch
Confidence 2222333211111 3578888888875
No 107
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.14 E-value=0.37 Score=48.92 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHhCCcEEEECCc
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHD 290 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~ 290 (520)
.++++..++++..+-++|+-||.
T Consensus 198 fg~~~~~~Fl~~n~l~~iiR~He 220 (271)
T smart00156 198 FGPDAVDEFLKKNNLKLIIRAHQ 220 (271)
T ss_pred cCHHHHHHHHHHCCCeEEEecCc
Confidence 36778899999999999999996
No 108
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.08 E-value=0.012 Score=58.69 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCC
Q 010015 99 KPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 99 ~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
.-|.++++||++|.|+.. . + .++.+.+... ...++.|.||||.
T Consensus 36 ~~d~li~lGDliDRGp~S-~-~---vl~~~~~~~~--------~~~~~~l~GNHE~ 78 (245)
T PRK13625 36 DQRKLAFVGDLTDRGPHS-L-R---MIEIVWELVE--------KKAAYYVPGNHCN 78 (245)
T ss_pred CCCEEEEECcccCCCcCh-H-H---HHHHHHHHhh--------CCCEEEEeCccHH
Confidence 348999999999998532 2 2 2333333321 2368999999983
No 109
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.06 E-value=0.43 Score=49.36 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHhCCcEEEECCccC--CCcEEeccC-CCCeEEEEeCcee
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDHD--QCTVSHESN-HEHIKEHTVGTIS 314 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H~--~c~~~h~~~-~~~i~Eitv~S~S 314 (520)
..++..+++++..+-++|+-||--. +....|... .+.-.-+||=|.+
T Consensus 220 fG~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~ 269 (305)
T cd07416 220 YSYRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAP 269 (305)
T ss_pred cCHHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCc
Confidence 4678889999999999999999743 333333210 0111567775554
No 110
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.04 E-value=0.012 Score=59.86 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCC
Q 010015 88 RRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 88 ~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
.+.+..+.-....|.++++||++|.|+.. .+ .++.+.+ .+..+..|.||||.
T Consensus 17 ~~LL~~i~f~~~~D~l~~lGDlVdRGP~s--le---vL~~l~~----------l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 17 QALLERVEFDPGQDTLWLTGDLVARGPGS--LE---VLRYVKS----------LGDAVRLVLGNHDL 68 (279)
T ss_pred HHHHHHhCcCCCCCEEEEeCCccCCCCCH--HH---HHHHHHh----------cCCCeEEEEChhHH
Confidence 44444433234679999999999999532 11 2232332 12236689999995
No 111
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.63 E-value=2.4 Score=45.10 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.8
Q ss_pred cCHHHHHHHHHHhCCcEEEECCc
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHD 290 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~ 290 (520)
..++..+++|+..+-++|+=||-
T Consensus 271 FG~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 271 WGPDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred cCHHHHHHHHHHcCCcEEEECCC
Confidence 57788999999999999999998
No 112
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.60 E-value=0.68 Score=48.11 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=29.2
Q ss_pred cCHHHHHHHHHHhCCcEEEECCccC--CCcEEeccCCCCeEEEEeCcee
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDHD--QCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H~--~c~~~h~~~~~~i~Eitv~S~S 314 (520)
..++..+++++..+-++|+-||.-. +....| +-+-+||=|.|
T Consensus 231 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~-----~~~~~TvfSa~ 274 (316)
T cd07417 231 FGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEH-----DGKCITVFSAP 274 (316)
T ss_pred eCHHHHHHHHHHcCCcEEEECCcccceeEEEec-----CCeEEEEeCCc
Confidence 4678889999999999999999853 233333 22456665554
No 113
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=95.05 E-value=0.17 Score=52.53 Aligned_cols=174 Identities=20% Similarity=0.216 Sum_probs=92.4
Q ss_pred CCCCCCEEEEcCCcCCC--CC----CCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHH
Q 010015 96 LPFKPDVILFLGDHFDG--GP----YLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRR 169 (520)
Q Consensus 96 ~~~~PD~VI~lGDL~d~--G~----~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~r 169 (520)
...+.|.++++||.-.- +. -.-++.|.. +..|-+.+. +....++|++.|-|||+-...-
T Consensus 27 ~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~-m~~F~~YYs---ge~~APVlTIFIGGNHEAsnyL----------- 91 (456)
T KOG2863|consen 27 GNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRR-MGDFYKYYS---GEIKAPVLTIFIGGNHEASNYL----------- 91 (456)
T ss_pred CCCCccEEEEccchHhhcchhhcccccCCHHHHH-HHHHHHHhC---CcccCceeEEEecCchHHHHHH-----------
Confidence 44689999999997531 11 112344443 333444443 2225678899999999942110
Q ss_pred HHHHhCC---cc-------eEEEeCCEEEEEEeCCCCC-----CCCC-C-----------CCCHHHHHHHHHhhccCCCC
Q 010015 170 YEKEFGK---RN-------YRFTVGKVEFIVVDAQTLD-----GHPE-G-----------NLAAATWDFVKNVSIDFQLL 222 (520)
Q Consensus 170 f~~~Fg~---~n-------y~~~ig~~~fV~LDS~~l~-----g~~~-g-----------~i~~~ql~wL~~ll~~~~~~ 222 (520)
.+-.+|. +| -+..+||+++-+|-...-. |... . ++..-...-|+++ +..
T Consensus 92 ~eLpyGGwVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~stiRsiYHvR~~dV~~Lkql----k~p 167 (456)
T KOG2863|consen 92 QELPYGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTIRSIYHVRISDVAKLKQL----KHP 167 (456)
T ss_pred HhcccCceeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhhhhhhhhhhhhhHHHHhh----cCc
Confidence 0111221 11 1467789998888654211 1110 1 1222222233332 223
Q ss_pred CeEEEEccCCCCC---CCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCC--CcEE
Q 010015 223 PRVLLTHIPLYRR---DETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQ--CTVS 297 (520)
Q Consensus 223 p~ILltH~PL~~~---~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~--c~~~ 297 (520)
--|.|+|--+-.. .+ .-.-+|..|++.+.. ..+-|......+||+.++|...||.|.|-- ..+.
T Consensus 168 iDIfLSHDWP~GI~~yGd-~~~LLr~KPFFrqei----------e~~~LGSp~~~eLL~~LkP~yWfsAHLH~KFaA~v~ 236 (456)
T KOG2863|consen 168 IDIFLSHDWPRGIYYYGD-KKQLLRLKPFFRQEI----------EEGKLGSPALEELLEDLKPQYWFSAHLHVKFAALVQ 236 (456)
T ss_pred ceEEeecCCCcchhhcCC-HHHHHhcCcHHHHHH----------hcCCcCChHHHHHHHHhCcchhhhhhHhhHHhhhhc
Confidence 3589999644321 11 011134455543322 123465567888999999999999999954 3445
Q ss_pred ec
Q 010015 298 HE 299 (520)
Q Consensus 298 h~ 299 (520)
|.
T Consensus 237 H~ 238 (456)
T KOG2863|consen 237 HN 238 (456)
T ss_pred cc
Confidence 53
No 114
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=94.87 E-value=1.6 Score=44.68 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHhCCcEEEECCcc
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDH 291 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H 291 (520)
.++++.+++++..+-++++=||--
T Consensus 212 fg~~~~~~Fl~~n~l~~iiR~He~ 235 (285)
T cd07415 212 FGQDVVEEFNHNNGLTLICRAHQL 235 (285)
T ss_pred cCHHHHHHHHHHCCCeEEEEcCcc
Confidence 567889999999999999999984
No 115
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=94.70 E-value=1.6 Score=44.92 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=29.1
Q ss_pred cCHHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCcee
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S 314 (520)
..+++.+++++..+-++++=||--...-+... .+-+-+||=|.+
T Consensus 222 fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~---~~~~~iTvfSa~ 265 (294)
T PTZ00244 222 FGEDIVNDFLDMVDMDLIVRAHQVMERGYGFF---ASRQLVTVFSAP 265 (294)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCccccCceEEc---CCCeEEEEeCCc
Confidence 46788999999999999999997443222221 123456665544
No 116
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=94.51 E-value=0.94 Score=46.58 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCcee
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S 314 (520)
.+++..+++++..+-++++-||.-...-+... .+-+-+||=|.+
T Consensus 220 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~---~~~~~iTvfSa~ 263 (293)
T cd07414 220 FGKDVVAKFLNKHDLDLICRAHQVVEDGYEFF---AKRQLVTLFSAP 263 (293)
T ss_pred cCHHHHHHHHHHcCCeEEEECCccccCeEEEe---CCCcEEEEecCC
Confidence 46788999999999999999998543333221 123456665544
No 117
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=94.38 E-value=0.096 Score=54.45 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=29.5
Q ss_pred cCHHHHHHHHHHhCCcEEEECCcc--CCCcEEeccCCCCeEEEEeCcee
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDH--DQCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H--~~c~~~h~~~~~~i~Eitv~S~S 314 (520)
..++..+++++..+-++|+=||-- +++...| +-+-+||=|.|
T Consensus 251 FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~-----~~~~iTvFSa~ 294 (321)
T cd07420 251 FGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCH-----NNKVITIFSAS 294 (321)
T ss_pred cCHHHHHHHHHHCCCcEEEEcChhhhcceEEec-----CCeEEEEecCC
Confidence 577888999999999999999974 3334333 22566665554
No 118
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=93.71 E-value=3.1 Score=43.33 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHhCCcEEEECCccC--CCcEEeccCCCCeEEEEeCcee
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDHD--QCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H~--~c~~~h~~~~~~i~Eitv~S~S 314 (520)
..+++.+++++..+-++|+=||--- +....+ +-+-+||=|.|
T Consensus 229 FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~~-----~~~~iTvFSa~ 272 (320)
T PTZ00480 229 FSQEIVQVFLKKHELDLICRAHQVVEDGYEFFS-----KRQLVTLFSAP 272 (320)
T ss_pred cCHHHHHHHHHhCCCcEEEEcCccccCceEEeC-----CCcEEEEeCCc
Confidence 5678899999999999999999743 233322 22456665554
No 119
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=93.65 E-value=0.1 Score=50.43 Aligned_cols=120 Identities=17% Similarity=0.304 Sum_probs=56.2
Q ss_pred EEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhC-CCCCCEEEEcCCcCCCCCCCC-------H-HHHHH
Q 010015 53 VAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASIL-PFKPDVILFLGDHFDGGPYLS-------D-EEWQE 123 (520)
Q Consensus 53 ilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~-~~~PD~VI~lGDL~d~G~~~s-------~-~e~~~ 123 (520)
|+++||+|+.+... .++ .|.+.+ .... ..+|+.+|++|++++...... . .....
T Consensus 1 Iv~~Sg~~~~~~~~----------~~~------~L~~~l-~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~ 63 (209)
T PF04042_consen 1 IVFASGPFLDSDNL----------SLE------PLRDLL-SGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEED 63 (209)
T ss_dssp EEEEES--CTTT-H----------HHH------HHHHHH-HCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHH
T ss_pred CEEEecCccCCCHh----------HHH------HHHHHH-HhccccCCCcEEEEeCCCcCccccccccccccccccccHH
Confidence 68999999973211 011 122222 2234 778999999999998632100 0 01112
Q ss_pred HHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCH---HHHHHHHHH----hCCcceEEEeCCEEEEEEeC
Q 010015 124 SLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKP---EIVRRYEKE----FGKRNYRFTVGKVEFIVVDA 193 (520)
Q Consensus 124 ~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~---~~~~rf~~~----Fg~~ny~~~ig~~~fV~LDS 193 (520)
...++.+.+..- ...+++..+||+||..........+ ....+..+. |-+.=+.+.+++..|++...
T Consensus 64 ~~~~~~~~~~~i----~~~~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~ 136 (209)
T PF04042_consen 64 FLKELDSFLESI----LPSTQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSG 136 (209)
T ss_dssp HHHHCHHHHCCC----HCCSEEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SS
T ss_pred HHHHHHHHHhhc----ccccEEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECC
Confidence 233344444422 2568999999999976542211111 001111111 11122567889988877654
No 120
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=93.23 E-value=4.4 Score=41.10 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=49.1
Q ss_pred HHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHH
Q 010015 90 AFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRR 169 (520)
Q Consensus 90 ~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~r 169 (520)
.+..+....++|++|.-||.+.+|...+++.+ +.+. ..++-++.+ |||.+...... ..++.
T Consensus 21 ~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~----~~L~----------~~GvDviT~-GNH~~Dkge~~----~~i~~ 81 (266)
T TIGR00282 21 NLPQLKSKYQADLVIANGENTTHGKGLTLKIY----EFLK----------QSGVNYITM-GNHTWFQKLIL----DVVIN 81 (266)
T ss_pred HHHHHHHhCCCCEEEEcCcccCCCCCCCHHHH----HHHH----------hcCCCEEEc-cchhccCcHHH----HHHhc
Confidence 33344456679999999999988755554422 2222 245667766 99998654210 11111
Q ss_pred HHHHh----------CCcceEEEeCCEEEEEEeCC
Q 010015 170 YEKEF----------GKRNYRFTVGKVEFIVVDAQ 194 (520)
Q Consensus 170 f~~~F----------g~~ny~~~ig~~~fV~LDS~ 194 (520)
..+.+ |.....+..++..+-+++-.
T Consensus 82 ~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~ 116 (266)
T TIGR00282 82 QKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQ 116 (266)
T ss_pred cccccccCCCCCCCCCCCcEEEEECCEEEEEEECC
Confidence 11111 22344567788777777654
No 121
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=90.65 E-value=0.75 Score=47.68 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHHhCCcEEEECCc--cCCCcEEeccCCCCeEEEEeCcee
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHD--HDQCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~--H~~c~~~h~~~~~~i~Eitv~S~S 314 (520)
..+++.+++++..+-++++=||. .++....+ +-.-+||=|.+
T Consensus 240 fg~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~-----~~~~iTvfSa~ 283 (311)
T cd07419 240 FGPDRVHRFLEENDLQMIIRAHECVMDGFERFA-----QGKLITLFSAT 283 (311)
T ss_pred ECHHHHHHHHHHCCCeEEEEechhhhCCeEEeC-----CCeEEEEecCC
Confidence 46778899999999999999997 34333333 12456665544
No 122
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=89.82 E-value=0.89 Score=46.96 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=21.4
Q ss_pred cCHHHHHHHHHHhCCcEEEECCccC
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDHD 292 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H~ 292 (520)
..+++.+++++..+-++|+=||--.
T Consensus 213 fg~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 213 FGAKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred cCHHHHHHHHHHCCCcEEEEcChhh
Confidence 5678889999999999999999743
No 123
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=87.89 E-value=1.6 Score=44.57 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhh----CCCCCCEEEEcCCcCCCCC---CCCHHH
Q 010015 48 DGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASI----LPFKPDVILFLGDHFDGGP---YLSDEE 120 (520)
Q Consensus 48 ~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~----~~~~PD~VI~lGDL~d~G~---~~s~~e 120 (520)
+...+++++||.||.++.. +++ |++.|+... ....|-++|+.|+.+...- ......
T Consensus 25 ~~~~~~VilSDV~LD~p~t-----------l~~------L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~ 87 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSPYT-----------FEV------LDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKV 87 (291)
T ss_pred CCceEEEEEEeeccCCHHH-----------HHH------HHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHH
Confidence 4568999999999965332 222 344444321 2345999999999987531 112233
Q ss_pred HHHHHHHHHH-HhccccCCCCCCceEEEccCCCCCCc
Q 010015 121 WQESLNRFKH-IFGLKSQDRFRDIRVHFLPGNHDNGY 156 (520)
Q Consensus 121 ~~~~~~Rf~~-if~~~~~~~~~~iPv~~vpGNHDig~ 156 (520)
|.+..+++.. ++..-+.. ..+..+..|||-.|.+.
T Consensus 88 yk~~Fd~La~llls~fp~L-~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 88 YIKGFEKLSVMLISKFKLI-LEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHHHHHHHHHHHHHhChHH-HhcCeEEEECCCCCCCc
Confidence 5556666665 23221111 24567899999999743
No 124
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=83.54 E-value=38 Score=33.24 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=18.8
Q ss_pred CCcEEEECCccCCCcEEeccCCCCeEEEEeCce
Q 010015 281 KPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTI 313 (520)
Q Consensus 281 ~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~ 313 (520)
+.++|+.||.|....+... .+....++.|.|
T Consensus 207 G~D~IiG~H~Hv~q~~E~~--~~~~I~YSlGNf 237 (239)
T cd07381 207 GADLVIGHHPHVLQGIEIY--KGKLIFYSLGNF 237 (239)
T ss_pred CCCEEEcCCCCcCCCeEEE--CCEEEEEcCCCc
Confidence 5699999999976554432 133444444443
No 125
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=82.83 E-value=40 Score=33.17 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=16.1
Q ss_pred HHHHHHHhCCcEEEECCccCCCcEE
Q 010015 273 SNRLLDLIKPVLVLSGHDHDQCTVS 297 (520)
Q Consensus 273 s~~LL~~l~p~lVfsGH~H~~c~~~ 297 (520)
++++.+ -+.++|+.||.|......
T Consensus 198 A~~l~~-~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 198 AHALID-AGADVVIGHHPHVLQPIE 221 (239)
T ss_pred HHHHHH-cCCCEEEcCCCCcCCceE
Confidence 344444 256999999999765443
No 126
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.95 E-value=7.3 Score=36.03 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=38.6
Q ss_pred HHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCce----eecCCC-CCCcEEEEEEEcC
Q 010015 273 SNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTI----SWQQGN-LYPSFRLLSASNS 332 (520)
Q Consensus 273 s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~----S~~~g~-~~Pgf~llsl~~~ 332 (520)
-..|-..+..+..++||+|....+.|. +--.+.-||. ++..-+ ..|+|.|+.+..+
T Consensus 99 L~~LaRqldvDILl~G~Th~f~Aye~e----g~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~ 159 (183)
T KOG3325|consen 99 LALLARQLDVDILLTGHTHKFEAYEHE----GKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGS 159 (183)
T ss_pred HHHHHHhcCCcEEEeCCceeEEEEEeC----CcEEeCCCcccCCCcccccCCCCCceEEEEecCC
Confidence 344555677899999999999988884 4344554444 333222 4799999998776
No 127
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=80.31 E-value=6.7 Score=39.80 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=47.0
Q ss_pred CCCCceEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHH
Q 010015 46 GVDGYDKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESL 125 (520)
Q Consensus 46 ~~~~~~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~ 125 (520)
...+..|++-|+|+|-.... +.....=|+.+.+||.+.-| -.+| +
T Consensus 57 ~~~~~~r~VcisdtH~~~~~----------------------------i~~~p~gDvlihagdfT~~g---~~~e----v 101 (305)
T KOG3947|consen 57 VGPGYARFVCISDTHELTFD----------------------------INDIPDGDVLIHAGDFTNLG---LPEE----V 101 (305)
T ss_pred CCCCceEEEEecCcccccCc----------------------------cccCCCCceEEeccCCcccc---CHHH----H
Confidence 34567999999999953110 01244568999999999877 3333 3
Q ss_pred HHHHHHhccccCCCCCCceEEEccCCCCCCccc
Q 010015 126 NRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAA 158 (520)
Q Consensus 126 ~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~ 158 (520)
..|++-+.. ....--++|.|||+++|..
T Consensus 102 ~~fn~~~gs-----lph~yKIVIaGNHELtFd~ 129 (305)
T KOG3947|consen 102 IKFNEWLGS-----LPHEYKIVIAGNHELTFDH 129 (305)
T ss_pred HhhhHHhcc-----CcceeeEEEeeccceeecc
Confidence 336554331 1222247899999999874
No 128
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=75.11 E-value=83 Score=31.14 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCcee
Q 010015 272 SSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 272 ~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S 314 (520)
..+++++ -+.++|+.+|.|.-..+... .+....+..|.|-
T Consensus 208 ~a~~lid-aGaDiIiG~HpHv~q~~E~y--~~~~I~YSLGNfi 247 (250)
T PF09587_consen 208 LARALID-AGADIIIGHHPHVIQPVEIY--KGKPIFYSLGNFI 247 (250)
T ss_pred HHHHHHH-cCCCEEEeCCCCcccceEEE--CCEEEEEeCcccc
Confidence 3455555 35799999999987666543 2445556655543
No 129
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=64.31 E-value=5.4 Score=44.74 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=23.3
Q ss_pred HHHHHHHhhCCCCCCEEEEcCCcCCCCCC
Q 010015 87 MRRAFFASILPFKPDVILFLGDHFDGGPY 115 (520)
Q Consensus 87 l~r~~~~~~~~~~PD~VI~lGDL~d~G~~ 115 (520)
+-.++...++++-.|.+=+.||++|.|+.
T Consensus 172 fI~al~~lIqrL~VDhLHIvGDIyDRGp~ 200 (640)
T PF06874_consen 172 FIIALSELIQRLAVDHLHIVGDIYDRGPR 200 (640)
T ss_pred HHHHHHHHHHHHhhhheeecccccCCCCC
Confidence 34455566788889999999999999963
No 130
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=64.17 E-value=1.9e+02 Score=30.32 Aligned_cols=62 Identities=8% Similarity=-0.025 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCceeecCCCCCCcEEEEEEEcC
Q 010015 268 ITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTISWQQGNLYPSFRLLSASNS 332 (520)
Q Consensus 268 ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S~~~g~~~Pgf~llsl~~~ 332 (520)
..++...++++++.-++|+-||-=-..-+.+. .+-+-+|+-|.---.|....+..+++++.+
T Consensus 231 fg~~~v~~f~~~~~ldlivRaHqvv~dGyeff---a~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~ 292 (331)
T KOG0374|consen 231 FGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFF---AGRKLVTIFSAPNYCGEFDNAGAVMRVDKN 292 (331)
T ss_pred ecHHHHHHHHHHhCcceEEEcCccccccceEe---cCceEEEEecCchhccccCCceEEEEECCC
Confidence 45677888999999999999996444444433 233445554433222333334667777655
No 131
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=61.43 E-value=12 Score=37.09 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=30.5
Q ss_pred EEEcCCcCCCCCC---CCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccc
Q 010015 103 ILFLGDHFDGGPY---LSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAAL 159 (520)
Q Consensus 103 VI~lGDL~d~G~~---~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~ 159 (520)
.+|+||-+-+ +. ..|+.....+.+.+.+-... .. +...-|.+++|||++.+.+.
T Consensus 88 ciflgdhtgd-rfsti~gd~yiltllnsm~nme~nk-ds-rinknvvvlagnhein~ngn 144 (318)
T PF13258_consen 88 CIFLGDHTGD-RFSTIFGDQYILTLLNSMRNMEGNK-DS-RINKNVVVLAGNHEINFNGN 144 (318)
T ss_pred ceeecCcccc-hhhhhcchHHHHHHHHHHHhccccc-cc-ccccceEEEecCceeccCch
Confidence 5789998732 21 22433333334443332211 11 35667999999999998764
No 132
>PHA03008 hypothetical protein; Provisional
Probab=50.18 E-value=34 Score=33.13 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=28.0
Q ss_pred CeEEEEccCCCCCCCCCCCCCCCCcccchhhhccCCCccchhccccCHHHHHHHHHHhCCcEEEECCccCC
Q 010015 223 PRVLLTHIPLYRRDETPCGPHRSSPIINQRIVRTGHSQEILYQNYITEESSNRLLDLIKPVLVLSGHDHDQ 293 (520)
Q Consensus 223 p~ILltH~PL~~~~~~~Cg~~r~~~~~~~~~~~~~~~~g~~yqn~ls~e~s~~LL~~l~p~lVfsGH~H~~ 293 (520)
--||+||-|++...+... -+++..+++. .++|++.++||.-++
T Consensus 162 tDILITHgPP~GhLD~~v---------------------------GC~~Ll~~I~-rVKPKyHVFGh~~~~ 204 (234)
T PHA03008 162 CDILITASPPFAILDDDL---------------------------ACGDLFSKVI-KIKPKFHIFNGLTQF 204 (234)
T ss_pred CCEEEeCCCCcccccccc---------------------------CcHHHHHHHH-HhCCcEEEeCCcccc
Confidence 459999999987533111 1233344454 678999999996554
No 133
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=45.92 E-value=2.8e+02 Score=31.33 Aligned_cols=54 Identities=24% Similarity=0.108 Sum_probs=27.2
Q ss_pred hCCCCCCE-EEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcc
Q 010015 95 ILPFKPDV-ILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYA 157 (520)
Q Consensus 95 ~~~~~PD~-VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~ 157 (520)
+....+|. ++-+||+-|+--+. +..+-. ..+-+.+|... ..+ ..+.|||++.-.
T Consensus 82 a~~~~~dvl~~dtGD~hdGtg~s-d~~~~~-g~~t~~l~~~~----~yD---~l~lGNHEl~~~ 136 (602)
T KOG4419|consen 82 ADRKGVDVLLVDTGDLHDGTGLS-DATDPP-GIYTNFLFKMM----PYD---ILTLGNHELYQA 136 (602)
T ss_pred HhccCCCEEEEecccccCCceee-eccCCc-hHHHHHHHhcC----ccc---hhhhcchhhhhh
Confidence 34445555 56799998765432 211111 11123444421 123 448999997543
No 134
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=42.50 E-value=21 Score=35.83 Aligned_cols=43 Identities=40% Similarity=0.586 Sum_probs=26.3
Q ss_pred CEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCC
Q 010015 101 DVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 101 D~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
.--+|+||.+|.|.. +-+. |.-++.... ..+..+..+-|||+-
T Consensus 71 t~YLFLGDyVDRG~~-SvEt-------~lLLl~lK~---rYP~ritLiRGNHEs 113 (303)
T KOG0372|consen 71 TNYLFLGDYVDRGYY-SVET-------FLLLLALKV---RYPDRITLIRGNHES 113 (303)
T ss_pred CceEeecchhccccc-hHHH-------HHHHHHHhh---cCcceeEEeeccchh
Confidence 347899999999943 2222 222221110 244568999999994
No 135
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=41.90 E-value=32 Score=33.91 Aligned_cols=41 Identities=37% Similarity=0.634 Sum_probs=25.1
Q ss_pred EEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCC
Q 010015 103 ILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 103 VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
-||+||.+|.|-. +-+. |--++-... ..+..+-.+-|||+-
T Consensus 76 YiFmGDfVDRGyy-SLEt-------fT~l~~Lka---ryP~~ITLlRGNHEs 116 (306)
T KOG0373|consen 76 YIFMGDFVDRGYY-SLET-------FTLLLLLKA---RYPAKITLLRGNHES 116 (306)
T ss_pred eEEeccccccccc-cHHH-------HHHHHHHhh---cCCceeEEeeccchh
Confidence 6789999999832 2222 322221110 345568899999994
No 136
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.28 E-value=5.5e+02 Score=28.35 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCC
Q 010015 96 LPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHD 153 (520)
Q Consensus 96 ~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHD 153 (520)
+....|++|+.|+++++. ..+.||.+ ++.-.. ...+|+|.+-+|--
T Consensus 31 k~GpFd~liCvGnfF~~~--~~~~e~~~----ykng~~------~vPiptY~~g~~~~ 76 (528)
T KOG2476|consen 31 KSGPFDLLICVGNFFGHD--TQNAEVEK----YKNGTK------KVPIPTYFLGDNAN 76 (528)
T ss_pred cCCCceEEEEecccCCCc--cchhHHHH----HhcCCc------cCceeEEEecCCCC
Confidence 445689999999999753 24556655 333222 46789998888764
No 137
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=39.75 E-value=4.1e+02 Score=26.82 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=46.8
Q ss_pred HHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHH
Q 010015 88 RRAFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIV 167 (520)
Q Consensus 88 ~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~ 167 (520)
++.+..+.+..++|+||.-|.=..+|...+.+.+.+ +|. .++- ....|||=+.-.. + .+.+
T Consensus 16 ~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~-------L~~-------~GvD-viT~GNH~wdkke---i-~~~i 76 (253)
T PF13277_consen 16 KEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEE-------LFK-------AGVD-VITMGNHIWDKKE---I-FDFI 76 (253)
T ss_dssp HHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHH-------HHH-------HT-S-EEE--TTTTSSTT---H-HHHH
T ss_pred HHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHH-------HHh-------cCCC-EEecCcccccCcH---H-HHHH
Confidence 444545567789999999999999998888765433 332 2333 3478999754221 1 1111
Q ss_pred HHHHH----------HhCCcceEEEeCCEEEEEEeCCC
Q 010015 168 RRYEK----------EFGKRNYRFTVGKVEFIVVDAQT 195 (520)
Q Consensus 168 ~rf~~----------~Fg~~ny~~~ig~~~fV~LDS~~ 195 (520)
+...+ .-|..+..++.++..+-++|-+.
T Consensus 77 ~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~G 114 (253)
T PF13277_consen 77 DKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMG 114 (253)
T ss_dssp HH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE-
T ss_pred hcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcc
Confidence 21111 11334557888999998888653
No 138
>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair]
Probab=38.71 E-value=65 Score=34.57 Aligned_cols=213 Identities=15% Similarity=0.182 Sum_probs=110.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCchhHHHHHHHhhHHHHHHHHHHh--hCCCCCCEEEEcCCcCCCCCCCCH----------
Q 010015 51 DKVAVIADPQIMDKTSLHLPPKSLALEVAQFFTDLYMRRAFFAS--ILPFKPDVILFLGDHFDGGPYLSD---------- 118 (520)
Q Consensus 51 ~rilvISDpHL~~~~~~~~~~~~l~~~l~~~~~d~~l~r~~~~~--~~~~~PD~VI~lGDL~d~G~~~s~---------- 118 (520)
=.++++|=+-|++..... + .+ .+..|+ |+-.+... +.....+-+++.|.+++.....-+
T Consensus 176 ~~i~lVSGL~l~~~~~~~-----~--~l-~~l~D~-l~g~lg~e~~~~~~~i~rliv~Gn~l~~~~~~~~~~~~~~~~~~ 246 (435)
T KOG2732|consen 176 RKIALVSGLDLGGGSKNL-----L--RL-ELLVDW-LRGQLGNEYEQSASSIGRLIVAGNSLSFSIKILDSQSTSISRLT 246 (435)
T ss_pred CEEEEEeccccCCCcchh-----H--HH-HHHHHH-HhcccCccccccccccceEEEeccccchhhhccccceeeeeecc
Confidence 479999999987654211 1 11 223332 22111111 124556789999999865421100
Q ss_pred ----HHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCcccccCCCHHHHHHHH------HHh-CCc-ceEEEeCCE
Q 010015 119 ----EEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAALLSHKPEIVRRYE------KEF-GKR-NYRFTVGKV 186 (520)
Q Consensus 119 ----~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~~~~~~~~~~~rf~------~~F-g~~-ny~~~ig~~ 186 (520)
.+-....+.+...+... ...+++=..||=-|-. .......+-...-|. +.| +-+ -|.|.++|+
T Consensus 247 ~~~~~~~~~~v~~ld~~L~~~----~~s~~VdimPG~~Dp~-~~~lPqqPlh~~lfp~s~~~~~~~q~vTNPy~~~ld~~ 321 (435)
T KOG2732|consen 247 KKDSAASVIPVKELDNFLAQI----PASISVDIMPGVNDPS-NFMLPQQPLHRCLFPKSPQSLSTLQLVTNPYEFSLDGA 321 (435)
T ss_pred ccccccccccHHHHHHHHHhc----cccCCccCCCCCCChh-hccCCcCCcchhhhccCccccchhhcccCceEEEEcCE
Confidence 00011223344444322 3567888899998832 111110010001111 111 122 378999999
Q ss_pred EEEEEeCCCCCCCCCCCCCHHHHHHHHHhhccCCCCCeEEEEccCCCCCCCCCCCCCCCC-cccchhhhccCCCccchhc
Q 010015 187 EFIVVDAQTLDGHPEGNLAAATWDFVKNVSIDFQLLPRVLLTHIPLYRRDETPCGPHRSS-PIINQRIVRTGHSQEILYQ 265 (520)
Q Consensus 187 ~fV~LDS~~l~g~~~g~i~~~ql~wL~~ll~~~~~~p~ILltH~PL~~~~~~~Cg~~r~~-~~~~~~~~~~~~~~g~~yq 265 (520)
+|...-.+....--.....+..++.|+. ++-..|+-+-.++--.|-|.-+. |+
T Consensus 322 ~vl~tSGqNvsDl~ry~~~~s~ld~le~---------tlkw~HvaPTaPDTL~cyPftekDPF----------------- 375 (435)
T KOG2732|consen 322 RVLGTSGQNVSDLLRYSSKKSGLDALEN---------TLKWGHVAPTAPDTLWCYPFTEKDPF----------------- 375 (435)
T ss_pred EEEecCCccHHHHhhhcchhhHHHHHhh---------hheeccccCCCCCcccccccccCCCe-----------------
Confidence 9887754422111011112233444443 46667887777765567654321 11
Q ss_pred cccCHHHHHHHHHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCcee
Q 010015 266 NYITEESSNRLLDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 266 n~ls~e~s~~LL~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S 314 (520)
+++ ..|.++++|..-.+....+...+..+.-++||.||
T Consensus 376 ----------v~~-~~Phvy~~GNqp~f~~r~i~~~g~~~~Lv~VP~Fs 413 (435)
T KOG2732|consen 376 ----------VMD-ECPHVYIVGNQPKFGTRLIEGGGKNTLLVCVPKFS 413 (435)
T ss_pred ----------eec-CCCeEEEecCCCcccceeeecCCceEEEEEccccc
Confidence 111 24789999998766555555555689999999998
No 139
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=36.33 E-value=31 Score=33.36 Aligned_cols=42 Identities=31% Similarity=0.310 Sum_probs=26.3
Q ss_pred HHHHHHHHHh-----CCcEEEECCccCCCcEEecc----CCCCeEEEEeCc
Q 010015 271 ESSNRLLDLI-----KPVLVLSGHDHDQCTVSHES----NHEHIKEHTVGT 312 (520)
Q Consensus 271 e~s~~LL~~l-----~p~lVfsGH~H~~c~~~h~~----~~~~i~Eitv~S 312 (520)
..+++|++.+ +..+++||+.|......... ....+.|+|.++
T Consensus 177 ~er~~l~~~~~~~~~~~vv~lSGDvH~~~~~~~~~~~~~~~~~~~e~~sS~ 227 (228)
T cd07389 177 AERERLLDLLAKRKIKNVVFLSGDVHLAEASDLPLDAPGDGYVLVEFTSSG 227 (228)
T ss_pred HHHHHHHHHHHHhCCCCeEEEecHHHHHHHhhcccccCCCCccEEEEecCC
Confidence 4466676653 34799999999876554421 224566666554
No 140
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=34.62 E-value=61 Score=35.39 Aligned_cols=53 Identities=28% Similarity=0.398 Sum_probs=33.3
Q ss_pred HHHHhhCCCCCCEEEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCCCccc
Q 010015 90 AFFASILPFKPDVILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDNGYAA 158 (520)
Q Consensus 90 ~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDig~~~ 158 (520)
++...++++..|.+=+.||+.|.|+.- +. .++++.+.- ..+ .-.||||+-.-+
T Consensus 181 ala~~iqrLvVDhLHiVGDIyDRGP~p-d~----Imd~L~~yh-------svD----iQWGNHDilWmg 233 (648)
T COG3855 181 ALAYLIQRLVVDHLHIVGDIYDRGPYP-DK----IMDTLINYH-------SVD----IQWGNHDILWMG 233 (648)
T ss_pred HHHHHHHHHhhhheeeecccccCCCCc-hH----HHHHHhhcc-------ccc----ccccCcceEEee
Confidence 344456778899999999999999642 22 233333221 122 347999985433
No 141
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.99 E-value=49 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=23.9
Q ss_pred HHHhCCcEEEECCccCCCcEEeccCCCCeEEEEeCcee
Q 010015 277 LDLIKPVLVLSGHDHDQCTVSHESNHEHIKEHTVGTIS 314 (520)
Q Consensus 277 L~~l~p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~S 314 (520)
......+.+++||+|....... .++..+..|+.-
T Consensus 183 ~~~~~vd~vI~GH~Hr~ai~~i----~~~~yi~lGdW~ 216 (237)
T COG2908 183 ARRHGVDGVIHGHTHRPAIHNI----PGITYINLGDWV 216 (237)
T ss_pred HHHcCCCEEEecCcccHhhccC----CCceEEecCcch
Confidence 3334568999999999765322 358888888854
No 142
>PF13063 DUF3925: Protein of unknown function (DUF3925)
Probab=33.16 E-value=21 Score=27.16 Aligned_cols=11 Identities=64% Similarity=0.954 Sum_probs=8.6
Q ss_pred chhHHHHHhhc
Q 010015 505 NIPLYMMLLFK 515 (520)
Q Consensus 505 ~~~~~~~~~~~ 515 (520)
-+-|||||||-
T Consensus 15 yfvlymmll~v 25 (66)
T PF13063_consen 15 YFVLYMMLLFV 25 (66)
T ss_pred HHHHHHHHHHH
Confidence 35689999984
No 143
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=23.95 E-value=67 Score=32.56 Aligned_cols=49 Identities=41% Similarity=0.528 Sum_probs=29.1
Q ss_pred hCCCCCCE-EEEcCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCCCceEEEccCCCCC
Q 010015 95 ILPFKPDV-ILFLGDHFDGGPYLSDEEWQESLNRFKHIFGLKSQDRFRDIRVHFLPGNHDN 154 (520)
Q Consensus 95 ~~~~~PD~-VI~lGDL~d~G~~~s~~e~~~~~~Rf~~if~~~~~~~~~~iPv~~vpGNHDi 154 (520)
+....||. -+|+||.+|.|.. +.+. -.++-.++ . +.+-.+-.+.|||+.
T Consensus 81 iGG~~pdtnylfmGDyvdrGy~-Svet-VS~lva~K--v-------ry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 81 IGGLAPDTNYLFMGDYVDRGYY-SVET-VSLLVALK--V-------RYPDRVTILRGNHES 130 (319)
T ss_pred ccCCCCCcceeeeeeecccccc-hHHH-HHHHHHhh--c-------cccceeEEecCchHH
Confidence 45556665 6899999999843 2221 11111111 0 234568899999995
No 144
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=23.84 E-value=3.3e+02 Score=25.29 Aligned_cols=34 Identities=26% Similarity=0.164 Sum_probs=21.5
Q ss_pred HHHHHHHhhCCCCCCEEEEcCCcCCCCCCCCHHH
Q 010015 87 MRRAFFASILPFKPDVILFLGDHFDGGPYLSDEE 120 (520)
Q Consensus 87 l~r~~~~~~~~~~PD~VI~lGDL~d~G~~~s~~e 120 (520)
++++++.++...+.|.||.+|-..-+.+-.+.+.
T Consensus 51 i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~ea 84 (163)
T TIGR02667 51 IRAQVSAWIADPDVQVILITGGTGFTGRDVTPEA 84 (163)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHH
Confidence 3455554433457999999999775554444443
No 145
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=23.01 E-value=2.6e+02 Score=25.27 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=24.7
Q ss_pred HhhCCCCCCEEEEcC---CcCCCCCCCCHHHHHHHHHHHHHHhc
Q 010015 93 ASILPFKPDVILFLG---DHFDGGPYLSDEEWQESLNRFKHIFG 133 (520)
Q Consensus 93 ~~~~~~~PD~VI~lG---DL~d~G~~~s~~e~~~~~~Rf~~if~ 133 (520)
..+...+||.|++.+ |+..+. +.++|.+.++.+-+.+.
T Consensus 44 ~~~~~~~p~~vvi~~G~ND~~~~~---~~~~~~~~~~~lv~~i~ 84 (171)
T cd04502 44 RLVLPYQPRRVVLYAGDNDLASGR---TPEEVLRDFRELVNRIR 84 (171)
T ss_pred hhhccCCCCEEEEEEecCcccCCC---CHHHHHHHHHHHHHHHH
Confidence 334556899999866 776443 56677776666655443
No 146
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=22.52 E-value=1.1e+02 Score=31.93 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=14.0
Q ss_pred HHHhhCCCCCCEEEEcCCcC
Q 010015 91 FFASILPFKPDVILFLGDHF 110 (520)
Q Consensus 91 ~~~~~~~~~PD~VI~lGDL~ 110 (520)
+.......+||+|+++||-.
T Consensus 59 ~~~~~~~~~Pd~Vlv~GD~~ 78 (346)
T PF02350_consen 59 LADVLEREKPDAVLVLGDRN 78 (346)
T ss_dssp HHHHHHHHT-SEEEEETTSH
T ss_pred HHHHHHhcCCCEEEEEcCCc
Confidence 33345667999999999954
No 147
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=21.98 E-value=1.1e+02 Score=29.28 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=19.6
Q ss_pred CcEEEECCccCCCcEEeccCCCCeEEEEeCce
Q 010015 282 PVLVLSGHDHDQCTVSHESNHEHIKEHTVGTI 313 (520)
Q Consensus 282 p~lVfsGH~H~~c~~~h~~~~~~i~Eitv~S~ 313 (520)
++.|++||+|....... ++..-+.+||.
T Consensus 169 ~~~iV~GHTh~~~~~~~----~~~i~ID~Gsv 196 (207)
T cd07424 169 VDAVVHGHTPVKRPLRL----GNVLYIDTGAV 196 (207)
T ss_pred CCEEEECCCCCCcceEE----CCEEEEECCCC
Confidence 47899999998765443 35566666764
Done!