BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010017
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 296 KVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 350
K+ GYG+TE+ PV+A A+ P G+ G + + E+KIVD +T + L G
Sbjct: 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431
Query: 351 VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 381
+ +RG Q+M+GY NP+AT + +D+DGWL+T
Sbjct: 432 ICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-------GDKFLSMLP 133
I DD+ Y+SGTTG PKGVMLTHK L + S+ V EN D L +LP
Sbjct: 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFHSDDVILCVLP 278
Query: 134 PWHVY 138
+H+Y
Sbjct: 279 MFHIY 283
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 300 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
GYG+TE+ PV+A A+ P G+ G + + E+KIVD ET LP G + +R
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
Query: 355 GSQVMQGYFKNPSATKQALDEDGWLNTG 382
G Q+M+GY +P AT + +D++GWL+TG
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKEGWLHTG 416
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 52 YDEIIDLGRESR---KAFSDSNDARKHYKYET-----------IGSDDIATYVYTSGTTG 97
Y+++ D RES + D H+ T I DD+ Y+SGTTG
Sbjct: 132 YEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTG 191
Query: 98 NPKGVMLTHKNLLHQIRSLYDIVPAENG-------DKFLSMLPPWHVY 138
PKGVMLTHK L I S+ V +N D L +LP +H+Y
Sbjct: 192 LPKGVMLTHKGL---ITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIY 236
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
++ GYGLTE++ I + G+VG + E K+VD +T + L +G + VRG
Sbjct: 341 IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGP 400
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
+M GY NP AT +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSMLPPWHVYE--R 140
IA + +SG+TG PKGV L H+ L + D + LS++P H +
Sbjct: 197 IALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFT 256
Query: 141 ACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK 189
GY I + LMY R ++ R Y I L+ TL+S + K
Sbjct: 257 TLGYLISGFRVVLMY---RFEEELFLRSLQDYKIQSALLVPTLFSFLAK 302
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
++ GYGLTE++ I + G+VG + E K+VD +T + L +G + VRG
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
+M GY NP AT +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD------IVPAENGDKFLSMLPPWHVYE 139
IA + +SG+TG PKGV L H+ + D I+P LS++P H +
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP---DTAILSVVPFHHGFG 248
Query: 140 --RACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK 189
GY I + LMY R ++ R Y I L+ TL+S K
Sbjct: 249 MFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSALLVPTLFSFFAK 297
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
++ GYGLTE++ I + G+VG + E K+VD +T + L +G + VRG
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
+M GY NP AT +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD------IVPAENGDKFLSMLPPWHVYE 139
IA + +SG+TG PKGV L H+ + D I+P LS++P H +
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP---DTAILSVVPFHHGFG 248
Query: 140 --RACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK 189
GY I + LMY R ++ R Y I L+ TL+S K
Sbjct: 249 MFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSALLVPTLFSFFAK 297
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
++ GYGLTE++ I + G+VG + E K+VD +T + L +G + VRG
Sbjct: 341 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 400
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
+M GY NP AT +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD------IVPAENGDKFLSMLPPWHVYE 139
IA + +SG+TG PKGV L H+ + D I+P LS++P H +
Sbjct: 197 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT---AILSVVPFHHGFG 253
Query: 140 --RACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK 189
GY I + LMY R ++ R Y I L+ TL+S K
Sbjct: 254 MFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSALLVPTLFSFFAK 302
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
V+ GYGLTE++ I + G+ G + + K++D +T + L +G V V+G
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
+M+GY NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 84 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSMLPPWHVYE- 139
+ +A + +SG+TG PKGV LTH+N++ + D + G L+++P H +
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 140 -RACGYFIFS-RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 183
GY I R + L LQ Y+ +I VP ++ L
Sbjct: 252 FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAIL 297
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
V+ GYGLTE++ I + G+ G + + K++D +T + L +G V V+G
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
+M+GY NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 84 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSMLPPWHVYE- 139
+ +A + +SG+TG PKGV LTH+N++ + D + G L+++P H +
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 140 -RACGYFIFS-RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 183
GY I R + L LQ Y+ +I VP ++ L
Sbjct: 252 FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAIL 297
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
V+ GYGLTE++ I + G+ G + + K++D +T + L +G V V+G
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
+M+GY NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 84 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSMLPPWHVYE- 139
+ +A + +SG+TG PKGV LTH+N++ + D + G L+++P H +
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 140 -RACGYFIFS-RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 183
GY I R + L LQ Y+ +I VP ++ L
Sbjct: 252 FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAIL 297
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 297 VQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
++ GYGLTE+ S +I R + G+ G + KIVD +T + L +G + V+G
Sbjct: 370 IRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKG 429
Query: 356 SQVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
+M+GY NP AT +D+DGWL++GDI +
Sbjct: 430 PMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 20 LCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYE 79
CSK A++ I+ + K I+++I + E +G++S +F +S+ +Y+
Sbjct: 161 FCSKRALQKILGVQKKLP-----IIQKIVILDSREDY-MGKQSMYSFIESHLPAGFNEYD 214
Query: 80 TIGSD-----DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSM 131
I A + +SG+TG PKGV LTHKN+ + D V L++
Sbjct: 215 YIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTV 274
Query: 132 LPPWHVYE--RACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK 189
+P H + GY I LMY R ++ R Y I L+ TL+S K
Sbjct: 275 IPFHHGFGMFTTLGYLTCGFRIVLMY---RFEEELFLRSLQDYKIQSALLVPTLFSFFAK 331
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 29/201 (14%)
Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA-----------ARRPTCNVLGSVG 324
V GG + P + +E +GV+V+ GYGLTE+SPV+ + + G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358
Query: 325 HPINHTEIKIVDAETNEVLPAGSK-GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 383
PI +++ D E V G G V+++G + GY+ N AT+ AL DG+ TGD
Sbjct: 359 LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 384 IG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVI 442
I W + ++ R KD ++ S GE + +++ V+
Sbjct: 419 IAVW-----------DEEGYVEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 443 G----QDQRRPGAIIVPDKEE 459
+ Q RP A++VP E+
Sbjct: 467 AIPHPKWQERPLAVVVPRGEK 487
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 91 YTSGTTGNPKGVMLTHKNL-LHQI-RSLYDIVPAENGDKFLSMLPPWHV 137
YT+GTTG PKGV+ +H+ L LH + SL D D L ++P +HV
Sbjct: 183 YTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 231
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 280 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 336
GS P+ D E G V YG TE++ + V G+VG + ++ D
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 337 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 396
ET + LP G G ++V+G V +GY++ P TK +DG+ TGD+G I
Sbjct: 336 PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKI--------- 386
Query: 397 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AI 452
V +L GR KD +V++ G NV P + + VIG G A+
Sbjct: 387 DERGYVHIL-GRGKD-LVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV 444
Query: 453 IVPDKEEVLMAAKRLSIVHADASELSKEK 481
+V DK + A+ ++H +L+K K
Sbjct: 445 VVRDKGATIDEAQ---VLHGLDGQLAKFK 470
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER- 140
G+DD+A +YTSGTTG KG L+H NL +L D D + LP +H +
Sbjct: 153 GADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLF 212
Query: 141 -ACGYFIFSRG 150
A +F+RG
Sbjct: 213 VASNVTLFARG 223
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 333
++GG +P + Y A ++V GY LTES + GS G T++
Sbjct: 290 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349
Query: 334 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXX 393
+ + V+ +G V ++ +++ Y+ P AT+ A D +GW TGDIG I
Sbjct: 350 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGY- 405
Query: 394 XXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG--- 450
L ++ R KD I+ S GENV P + ++ VIG + G
Sbjct: 406 ---------LYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Query: 451 -AIIVPDKEEV 460
AI+V D+ EV
Sbjct: 456 AAIVVADQNEV 466
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 141
G DD +YTSGTTG+PKGV+ TH+++ S + D+ L LP +HV
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227
Query: 142 CGYFIFSRGIELM 154
F RG+ L+
Sbjct: 228 TVIFSAMRGVTLI 240
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 254 HLLAEKL-VYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 311
H +AE L ++ A+ ++ VSG +LP+H + A G +V YG+TE+ +
Sbjct: 255 HRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS 314
Query: 312 ARRPTCNVLGSVGHPINHTEIKIVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSAT 369
R G+VG P+ E+++V+ + + L S G ++VRG + Y P AT
Sbjct: 315 VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 370 KQALDEDGWLNTGDI 384
A EDG+ TGD+
Sbjct: 375 AAAFTEDGFFRTGDM 389
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 39 VAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD--IATYVYTSGTT 96
+AP E P E +D+ +R A + G+DD A VYTSGTT
Sbjct: 120 LAPPDAELPPALGALERVDVDVRARGAVPED------------GADDGDPALVVYTSGTT 167
Query: 97 GNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 145
G PKG ++ + L + +L D D + LP +HV+ G
Sbjct: 168 GPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGIL 216
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 280 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 336
GS P+ D E G V YG+TE++ + V G+VG + ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 337 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
ET LP G G+++V G V GY++ P T +DG+ TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER- 140
G+DD+A +YTSGTTG G ML+H NL +L D D + LP +H +
Sbjct: 153 GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLF 212
Query: 141 -ACGYFIFSRG 150
A +F+RG
Sbjct: 213 VASNVTLFARG 223
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 280 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 336
GS P+ D E G V YG+TE++ + V G+VG + ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 337 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
ET LP G G+++V G V GY++ P T +DG+ TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER- 140
G+DD+A +YTSGTTG G ML+H NL +L D D + LP +H +
Sbjct: 153 GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLF 212
Query: 141 -ACGYFIFSRG 150
A +F+RG
Sbjct: 213 VASNVTLFARG 223
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 280 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 336
GS P+ D E G V YG+TE++ + V G+VG + ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 337 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
ET LP G G+++V G V GY++ P T +DG+ TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER- 140
G+DD+A +YTSGTTG G ML+H NL +L D D + LP +H +
Sbjct: 153 GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLF 212
Query: 141 -ACGYFIFSRG 150
A +F+RG
Sbjct: 213 VASNVTLFARG 223
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 322 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 381
S G P+ + +VDAE + LP G G + +RG V +GY+ N +AT+ A +GW +T
Sbjct: 322 SAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHT 379
Query: 382 GDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLST-GENVEPXXXXXXXXRSSLIRQIV 440
GD+G L GRA + ++ T GENV P + I V
Sbjct: 380 GDMGRF----------DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429
Query: 441 VIG 443
VIG
Sbjct: 430 VIG 432
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 76 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPW 135
+ G+ D ++T+ G P+G +++ NLL SL D D L MLP +
Sbjct: 152 FSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLF 211
Query: 136 HV 137
HV
Sbjct: 212 HV 213
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
G KV GYG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVN-GYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
G KV + YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVNI-YGTTEAXNSLYXRQPKT---GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DXII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 249 ILWPLHLLAEKLVYK-KIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS 307
I+W L + YK +IQS + G S SL + E + K+Q +G+ E
Sbjct: 293 IMW----LEKAAQYKDQIQSLKLLQVGGASFPESLARQVP---EVLNCKLQQVFGMAEGL 345
Query: 308 PVIAARRPTCN--VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK 364
V R + + + G PI+ EIKIVD + EV P G G++ RG GY++
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQ 403
Query: 365 NPSATKQALDEDGWLNTGDIGWIAP 389
+P Q DED + +GD+ P
Sbjct: 404 SPEHNSQVFDEDNYYYSGDLVQRTP 428
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 72 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 131
A + + +D++A + + G+TG PK + TH + + +R+ +I + + L
Sbjct: 179 AETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCA 238
Query: 132 LPPWHVY 138
LP H +
Sbjct: 239 LPAPHNF 245
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
G KV + YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
G KV + YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
G KV + YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVP 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
G KV YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVN-AYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 333
++GG +P + Y A ++V GY LTES + GS G T++
Sbjct: 276 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 335
Query: 334 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
+ + V+ +G V ++ +++ Y+ P AT+ A D +GW TGDIG I
Sbjct: 336 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 386
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 141
G DD +YTSGTTG+PKGV+ TH+++ S + D+ L LP +HV
Sbjct: 154 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 213
Query: 142 CGYFIFSRGIELM 154
F RG+ L+
Sbjct: 214 TVIFSAMRGVTLI 226
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
+I S+DIA YTSG+T +PKGV ++H NLL + ++ + S LPP H
Sbjct: 163 SIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHH 219
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL- 373
P L S G+PI E+KI+D +T G + V+ + V +GY+ P T+ A
Sbjct: 368 PGSYKLVSSGNPIQ--EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFA 425
Query: 374 -----DEDG--WLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEP 423
DE +L TGD+G++ + L + GR KD I++ G+N P
Sbjct: 426 GKIKDDERSAIYLRTGDLGFLHENE-----------LYVTGRIKDLIII-YGKNHYP 470
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 301 YGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 359
+G TE+ P + P + + G P + E+K++ E L G G + +RG +
Sbjct: 335 WGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIF 394
Query: 360 QGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVL 415
+GY+K ++ DE G + TGD+G+I L + R K+ I
Sbjct: 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEE----------GFLHFQDRVKEVIKY 444
Query: 416 STGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADAS 475
G + P + + + VIG+ G VP VL R + D
Sbjct: 445 K-GYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE--VPKAFIVLKPEYRGKVDEEDII 501
Query: 476 ELSKEK 481
E +E+
Sbjct: 502 EWVRER 507
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 293 IGVKVQVGYGLTESSPVIAARR---PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSK 348
IG ++Q +G+ E ++ R ++ + G+P+ E+ + DAE N LP G
Sbjct: 326 IGCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP-LPQGEV 382
Query: 349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 408
G + RG +GY+K+P A D +G+ +GD+ I P + ++GR
Sbjct: 383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE----------GYITVQGR 432
Query: 409 AKDTI 413
KD I
Sbjct: 433 EKDQI 437
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 138
+D++A + + GTTG PK + TH + + +R +I ++L +P H Y
Sbjct: 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 274 AGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 333
A V+G P + F E G+K+ G+G TE+ IA GS+G P +I+
Sbjct: 346 AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIE 405
Query: 334 IVDAETN--EVLPAGSKGIVKVRGSQV--MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
++D + EV G I + G V Y K+P T++ DG+ +TGD+ W+
Sbjct: 406 LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM-- 462
Query: 390 HHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRP 449
L GRA D I+ ++G V P + + + + G
Sbjct: 463 --------DEDGYLWFVGRADD-IIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVR 513
Query: 450 GAII 453
G +I
Sbjct: 514 GQVI 517
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 84 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 136
+DIA YTSG+T P+GV++TH+ + +R++ +D + GD+ +S LP +H
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYH 228
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 408
G + + G + GYF + ++ + GWL+TGD+G++ + L + GR
Sbjct: 411 GHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYLLDGY-----------LYVTGR 458
Query: 409 AKDTIVLSTGENVEP 423
KD I++ G N+ P
Sbjct: 459 IKDLIIIR-GRNIWP 472
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL---SMLPPWHVY 138
G++D+A +YTSGTTGNPKGV + H N+L + + D++L S+ + V+
Sbjct: 173 GAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVW 232
Query: 139 ERACGYFIFSRGIELM 154
E + FS G EL+
Sbjct: 233 EI---WGAFSTGAELV 245
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 277 SGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV 335
S G +LP I + F G ++ G G TE + + R G+ G P+ EI++
Sbjct: 307 SAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR 366
Query: 336 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXX 395
D E +P G G + ++G Y+ N ++ + W+ +GD P+
Sbjct: 367 D-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPN----- 419
Query: 396 XXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQ 446
V GR+ D + +S G+ V P + + + V+G D
Sbjct: 420 -----GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYE 139
G DDIA ++Y+SG+TG PKG + TH N L+ LY I+ D S + Y
Sbjct: 181 GCDDIAFWLYSSGSTGKPKGTVHTHAN-LYWTAELYAKPILGIAENDVVFSAAKLFFAYG 239
Query: 140 RACGY-FIFSRGIELMYTAVRNLKD----DLQRYQPHYMISVPLVYETL 183
G F S G + A R D L ++P VP +Y +
Sbjct: 240 LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANM 288
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 278 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 337
G LP ++ + G+ ++ YG TE+ + G +G + +++I+D
Sbjct: 331 GESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDD 390
Query: 338 ETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHX 392
+ N VLP G++G + +R + GY NP T + D WL GD G
Sbjct: 391 KGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG------- 441
Query: 393 XXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAI 452
GRA D I+ S+G + P + + VI G +
Sbjct: 442 ---IKDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497
Query: 453 IVPDKEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 492
+ K V++A++ LS D +L+KE K+++ Y RK
Sbjct: 498 V---KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 278 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 337
G LP ++ + G+ ++ YG TE+ + G +G + +++I+D
Sbjct: 331 GESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDD 390
Query: 338 ETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHX 392
+ N VLP G++G + +R + GY NP T + D WL GD G
Sbjct: 391 KGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG------- 441
Query: 393 XXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAI 452
GRA D I+ S+G + P + + VI G +
Sbjct: 442 ---IKDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497
Query: 453 IVPDKEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 492
+ K V++A++ LS D +L+KE K+++ Y RK
Sbjct: 498 V---KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 83 SDDIATYVYTSGTTGNPKGVMLTHKNL 109
S D+A +YTSGTTGNPKG ML HK +
Sbjct: 181 STDLAYVIYTSGTTGNPKGTMLEHKGI 207
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 300 GYGLTESSPVIAARRPTCNVLGS---VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
YG TE++ T +G +G PI +T+I IVD E ++ G G + + G
Sbjct: 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE 380
Query: 357 QVMQGYFKNPSATKQAL---------------DEDGWLNTGDIGWIA 388
+ +GY+K P T Q D+ WL+ G+I ++
Sbjct: 381 GLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 315 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 373
P ++ + G P++ + E ++ D +V P G G + RG ++GY+K +
Sbjct: 345 PEEIIVNTQGKPMSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 374 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 413
EDG+ TGDI +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 77 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
K + S D+A + G+TG K + TH + ++ ++ ++ ++ +L+ LP H
Sbjct: 175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAH 234
Query: 137 VY 138
Y
Sbjct: 235 NY 236
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 315 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 373
P ++ + G P + + E ++ D +V P G G + RG ++GY+K +
Sbjct: 345 PEEIIVNTQGKPXSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 374 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 413
EDG+ TGDI +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 77 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
K + S D+A + G+TG K + TH + ++ ++ ++ ++ +L+ LP H
Sbjct: 175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAH 234
Query: 137 VY 138
Y
Sbjct: 235 NY 236
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 288 LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEV 342
LF K+ YG TE++ ++A T ++ + +G+P + I+D + E
Sbjct: 284 LFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKE- 342
Query: 343 LPAGSKGIVKVRGSQVMQGYFKNPSATKQA---LDEDGWLNTGDIG 385
L +G +G + V G V +GY NP T +A +TGDIG
Sbjct: 343 LSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIG 388
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
++ DD ++TSGTTG PKGV ++H NLL
Sbjct: 141 SVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 301 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
YG TE++ + + T +V+ VG I I+D E + LP G KG + + G
Sbjct: 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAG 351
Query: 356 SQVMQGYFKNPSATKQAL--DEDGW-LNTGDIGWI 387
V +GY P T++A E W TGD G+I
Sbjct: 352 PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 90 VYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 133
+YTSG+TGNPKGV ++ NL + P G FL+ P
Sbjct: 149 IYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAP 192
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM 131
I +D A +YTSGTTG PKG + TH N+ ++ + D + + D FLS+
Sbjct: 604 IDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV-DYMAFSDQDTFLSV 653
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 323 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW---- 378
+G PI++ + I++ E +++ P G+ G + + G V +GY TK+ E+ +
Sbjct: 779 IGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGE 837
Query: 379 --LNTGDIG-WI 387
TGD+ W+
Sbjct: 838 TLYRTGDLARWL 849
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 69 SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL 109
++DA +G +D+A ++TSG+TG PKGVM H+ L
Sbjct: 199 ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRAL 239
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 14/165 (8%)
Query: 323 VGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 380
+G P+ ++D +++ PA G+ G + V G+ + GY P+ T + D +
Sbjct: 385 IGVPLAGKRAYVLD---DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAG 441
Query: 381 TGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIV 440
G G VL GRA D + + G VEP +RQ
Sbjct: 442 PG--GERMYRTGDLARRRADGVLEYVGRADDQVKIR-GFRVEPGEVEARLVGHPAVRQAA 498
Query: 441 VIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISL 485
V+ QD R + DK+ V + DA+EL + +L
Sbjct: 499 VLAQDSR------LGDKQLVAYVVAERADAPPDAAELRRHVAEAL 537
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 69 SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL 109
++DA +G +D+A ++TSG+TG PKGVM H+ L
Sbjct: 199 ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRAL 239
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 39/211 (18%)
Query: 290 YEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKG 349
Y + G+ LT + ++ AR T VG P + ++KI + G
Sbjct: 302 YNSFGMTETCSQFLTATPEMLHARPDT------VGMPSANVDVKIKNPNKE------GHG 349
Query: 350 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRA 409
+ ++G+ VM GY T E+G+ NTGDI I +++ R
Sbjct: 350 ELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEI----------DHEGYVMIYDRR 397
Query: 410 KDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSI 469
KD +++S GEN+ P + I V +G G VP +
Sbjct: 398 KD-LIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ--VP------------KL 442
Query: 470 VHADASELSKEKTISLLYGELRKWTSKCSFQ 500
S++SK + I+ L L K+ F+
Sbjct: 443 YFVSESDISKAQLIAYLSKHLAKYKVPKHFE 473
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 84 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
DDIA+ ++TSGTTG K V T +N + + + +LS+LP +H+
Sbjct: 163 DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHI 216
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLN 380
++IVD++T P G+ G + V G V GY++ P +++ E WL
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 381 TGDIGWI 387
TGD G++
Sbjct: 464 TGDSGFV 470
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 71 DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLY----DIVPAE 123
DA Y ++ A YTSG+T P GV+++H+N+ Q+ S Y D +P
Sbjct: 170 DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPP 229
Query: 124 NGDKFLSMLPPWH 136
N +S LP +H
Sbjct: 230 N-SALVSWLPFYH 241
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLN 380
++IVD++T P G+ G + V G V GY++ P +++ E WL
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 381 TGDIGWI 387
TGD G++
Sbjct: 464 TGDSGFV 470
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 71 DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLY----DIVPAE 123
DA Y ++ A YTSG+T P GV+ +H+N+ Q+ S Y D +P
Sbjct: 170 DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPP 229
Query: 124 NGDKFLSMLPPWH 136
N +S LP +H
Sbjct: 230 N-SALVSWLPFYH 241
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 90 VYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 133
+YTSG+TGNPKGV +T+ L+ + + + G FL+ P
Sbjct: 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAP 193
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 301 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
YG TE++ + T VL VG+ + + I+ E + P G KG + + G
Sbjct: 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIM-KEDGTIAPDGEKGEIVIVG 352
Query: 356 SQVMQGYFKNPSATKQA---LDEDGWLNTGDIGWI 387
V GY +P T++A +D + TGD G++
Sbjct: 353 PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 90 VYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 133
+YTSG+TGNPKGV +T+ L+ + + + G FL+ P
Sbjct: 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAP 193
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 301 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
YG TE++ + T VL VG+ + + I+ E + P G KG + + G
Sbjct: 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIM-KEDGTIAPDGEKGEIVIVG 352
Query: 356 SQVMQGYFKNPSATKQA---LDEDGWLNTGDIGWI 387
V GY +P T++A +D + TGD G++
Sbjct: 353 PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 275 GVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR--PTCNVLGSVGHPINHTEI 332
GV G P ++ + V + YG TE + +A R P + +GHP+ +
Sbjct: 300 GVGGEKXTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGDSVA 358
Query: 333 KIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGDI 384
++ +NE + G G + + GS V GY P A K D +G TGDI
Sbjct: 359 HVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDA-KGFCDINGRKXYRTGDI 411
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 87 ATYVYTSGTTGNPKGVMLTHKNL 109
A +YTSG+TG PKGV ++ NL
Sbjct: 178 AYLLYTSGSTGTPKGVRVSRHNL 200
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 72 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
A ++ E + ++D +YTSG+TG PKGV+ T L
Sbjct: 244 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 72 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
A ++ E + ++D +YTSG+TG PKGV+ T L
Sbjct: 244 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 72 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
A ++ E + ++D +YTSG+TG PKGV+ T L
Sbjct: 244 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 72 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
A ++ E + ++D +YTSG+TG PKGV+ T L
Sbjct: 244 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 72 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
A ++ E + ++D +YTSG+TG PKGV+ T L
Sbjct: 244 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 72 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
A ++ E + ++D +YTSG+TG PKGV+ T L
Sbjct: 244 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 72 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
A ++ E + ++D +YTSG+TG PKGV+ T L
Sbjct: 244 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNL 109
+D IA ++SGTTG PK + TH +
Sbjct: 160 CFAADQIAYINFSSGTTGRPKAIACTHAGI 189
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 53 DEIIDLGRESRKAFSDSNDARKHYKYETIGSD---DIATYVYTSGTTGNPKGVMLTHKNL 109
D I L + F+ +D R +Y + + D D +SGTTGNP ++ H
Sbjct: 52 DSIQSLDDIRKIPFTTKSDXRANYPFGLVAGDXKRDGVRIHSSSGTTGNP--TVIVHSQ- 108
Query: 110 LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVR 159
H + S ++V + + V++ + GY F+ G+ Y A R
Sbjct: 109 -HDLDSWANLVAR---CLYXVGIRKTDVFQNSSGYGXFTGGLGFQYGAER 154
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 73 RKHYKYETIGSDDIATYVYTSGTTGNPKGV 102
+ +Y + S+D +YTSG+TG PKGV
Sbjct: 251 KTYYPCTPVDSEDPLFLLYTSGSTGAPKGV 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,559,557
Number of Sequences: 62578
Number of extensions: 580073
Number of successful extensions: 1385
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 120
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)