Query 010017
Match_columns 520
No_of_seqs 342 out of 2710
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rix_A Luciferase, luciferin 4 100.0 2E-58 7E-63 488.9 25.6 392 6-518 126-530 (550)
2 2d1s_A Luciferase, luciferin 4 100.0 9.9E-58 3.4E-62 483.1 30.7 392 3-518 126-532 (548)
3 3ni2_A 4-coumarate:COA ligase; 100.0 7.6E-58 2.6E-62 483.0 28.7 332 80-518 174-524 (536)
4 3g7s_A Long-chain-fatty-acid-- 100.0 6.2E-57 2.1E-61 477.5 28.3 384 4-518 127-531 (549)
5 4fuq_A Malonyl COA synthetase; 100.0 2E-57 6.7E-62 476.0 23.8 330 80-518 151-489 (503)
6 1v25_A Long-chain-fatty-acid-C 100.0 4.3E-57 1.5E-61 477.7 24.7 379 6-518 123-525 (541)
7 3etc_A AMP-binding protein; ad 100.0 1.3E-55 4.3E-60 469.4 31.7 392 2-518 159-568 (580)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.1E-56 1.1E-60 470.8 26.1 330 80-518 178-520 (539)
9 3c5e_A Acyl-coenzyme A synthet 100.0 1.9E-55 6.4E-60 467.4 31.5 387 3-518 148-551 (570)
10 3nyq_A Malonyl-COA ligase; A/B 100.0 6.7E-56 2.3E-60 464.4 27.5 335 79-518 150-497 (505)
11 3r44_A Fatty acyl COA syntheta 100.0 9.2E-56 3.2E-60 464.9 28.4 329 79-518 165-502 (517)
12 1pg4_A Acetyl-COA synthetase; 100.0 3.3E-55 1.1E-59 472.5 33.0 383 14-518 200-610 (652)
13 3o83_A Peptide arylation enzym 100.0 2.9E-56 1E-60 471.6 24.0 330 80-518 187-529 (544)
14 3e7w_A D-alanine--poly(phospho 100.0 2.3E-54 7.7E-59 454.0 31.7 330 80-518 139-492 (511)
15 1t5h_X 4-chlorobenzoyl COA lig 100.0 5E-55 1.7E-59 458.2 26.3 330 80-518 149-493 (504)
16 1ry2_A Acetyl-coenzyme A synth 100.0 1E-54 3.5E-59 469.0 29.0 393 13-518 206-626 (663)
17 2v7b_A Benzoate-coenzyme A lig 100.0 7.2E-55 2.4E-59 459.9 26.7 389 3-518 122-521 (529)
18 3ivr_A Putative long-chain-fat 100.0 2.2E-55 7.4E-60 461.6 20.3 326 79-518 155-490 (509)
19 1amu_A GRSA, gramicidin synthe 100.0 2.5E-54 8.7E-59 458.0 26.3 322 80-518 178-518 (563)
20 3rg2_A Enterobactin synthase c 100.0 1.2E-53 4E-58 458.3 31.3 331 80-518 180-523 (617)
21 4gr5_A Non-ribosomal peptide s 100.0 7.8E-55 2.7E-59 463.3 19.6 328 80-518 210-560 (570)
22 3fce_A D-alanine--poly(phospho 100.0 2E-54 6.9E-59 454.6 22.2 335 79-518 139-493 (512)
23 3tsy_A Fusion protein 4-coumar 100.0 2.5E-54 8.4E-59 486.8 21.6 333 79-518 220-571 (979)
24 3l8c_A D-alanine--poly(phospho 100.0 1.4E-53 4.8E-58 449.2 25.2 338 79-518 140-501 (521)
25 3ipl_A 2-succinylbenzoate--COA 100.0 2.5E-53 8.5E-58 445.2 24.6 320 79-518 158-486 (501)
26 4dg8_A PA1221; ANL superfamily 100.0 1.7E-53 5.9E-58 455.6 23.2 322 80-518 160-502 (620)
27 3kxw_A Saframycin MX1 syntheta 100.0 2.5E-51 8.5E-56 438.8 23.6 336 79-518 162-556 (590)
28 2vsq_A Surfactin synthetase su 100.0 2.1E-50 7.1E-55 466.0 30.3 325 80-518 603-949 (1304)
29 3gqw_A Fatty acid AMP ligase; 100.0 3E-50 1E-54 429.3 26.0 332 80-518 172-552 (576)
30 3ite_A SIDN siderophore synthe 100.0 6.7E-51 2.3E-55 432.7 17.7 339 80-518 171-532 (562)
31 4gs5_A Acyl-COA synthetase (AM 100.0 2.3E-49 7.8E-54 395.9 17.6 299 83-518 36-343 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 2.7E-47 9.1E-52 392.3 25.3 330 80-518 81-426 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 4.4E-46 1.5E-50 384.0 26.6 323 80-518 88-433 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 5.7E-46 2E-50 382.5 25.7 323 80-518 86-428 (437)
35 3t5a_A Long-chain-fatty-acid-- 100.0 3.7E-42 1.3E-46 358.6 20.0 246 79-408 178-480 (480)
36 3hgu_A EHPF; phenazine, antibi 100.0 5.1E-32 1.7E-36 272.1 16.3 244 80-419 87-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.0 5E-10 1.7E-14 90.5 8.5 93 407-518 1-99 (109)
38 3gxs_A Phenylacetate-coenzyme 99.0 7.7E-10 2.6E-14 89.3 8.4 94 407-519 1-100 (109)
39 4b2g_A GH3-1 auxin conjugating 99.0 1E-08 3.6E-13 106.1 16.1 144 273-444 308-478 (609)
40 4eql_A 4-substituted benzoates 98.9 4.3E-08 1.5E-12 101.4 19.1 132 273-432 303-446 (581)
41 4epl_A Jasmonic acid-amido syn 98.9 6.9E-08 2.4E-12 99.6 18.6 136 283-444 316-473 (581)
42 2cvi_A 75AA long hypothetical 53.4 29 0.00099 25.0 5.7 41 423-463 15-55 (83)
43 2zbc_A 83AA long hypothetical 49.0 31 0.0011 24.6 5.3 36 424-459 16-51 (83)
44 3ni2_A 4-coumarate:COA ligase; 42.1 1.4E+02 0.0047 30.0 10.8 96 82-185 35-137 (536)
45 3g7s_A Long-chain-fatty-acid-- 40.5 2.1E+02 0.0071 28.8 11.9 100 83-184 33-139 (549)
46 2djw_A Probable transcriptiona 38.9 50 0.0017 24.2 5.1 42 423-464 15-56 (92)
47 3rix_A Luciferase, luciferin 4 37.3 92 0.0032 31.5 8.6 82 103-185 50-138 (550)
48 3ivr_A Putative long-chain-fat 36.7 1.6E+02 0.0055 29.3 10.2 92 82-183 19-117 (509)
49 3t5a_A Long-chain-fatty-acid-- 34.2 2E+02 0.007 28.0 10.5 99 82-184 37-147 (480)
50 2cg4_A Regulatory protein ASNC 27.8 1.3E+02 0.0044 24.3 6.4 42 423-464 82-123 (152)
51 1amu_A GRSA, gramicidin synthe 27.2 3.4E+02 0.012 27.4 10.8 89 82-180 52-147 (563)
52 1t5h_X 4-chlorobenzoyl COA lig 26.3 3.1E+02 0.011 27.1 10.2 91 82-180 15-114 (504)
53 3kxw_A Saframycin MX1 syntheta 25.9 3E+02 0.01 27.7 10.3 96 82-183 24-129 (590)
54 1v25_A Long-chain-fatty-acid-C 25.1 3E+02 0.01 27.5 10.0 95 83-183 32-133 (541)
55 3etc_A AMP-binding protein; ad 24.0 3.3E+02 0.011 27.6 10.0 92 82-178 69-167 (580)
56 2v7b_A Benzoate-coenzyme A lig 22.5 3E+02 0.01 27.4 9.3 92 82-183 36-134 (529)
57 2dbb_A Putative HTH-type trans 22.3 1.8E+02 0.0062 23.2 6.3 35 424-458 83-118 (151)
58 2cfx_A HTH-type transcriptiona 22.2 2.1E+02 0.0072 22.7 6.6 36 423-458 78-113 (144)
59 3i4p_A Transcriptional regulat 21.2 1.4E+02 0.0049 24.4 5.4 36 423-458 79-114 (162)
60 3gqw_A Fatty acid AMP ligase; 20.7 4E+02 0.014 26.7 9.9 81 102-183 48-142 (576)
61 2p5v_A Transcriptional regulat 20.6 2.2E+02 0.0074 23.1 6.5 40 423-462 85-124 (162)
62 2d1s_A Luciferase, luciferin 4 20.3 2.8E+02 0.0095 27.9 8.5 81 103-184 52-139 (548)
No 1
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2e-58 Score=488.93 Aligned_cols=392 Identities=22% Similarity=0.292 Sum_probs=237.3
Q ss_pred EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017 6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 85 (520)
Q Consensus 6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (520)
++.+.+..+.+.+....++.++.+++++..... ....++.+++............ ..+.....++|
T Consensus 126 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d 191 (550)
T 3rix_A 126 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY--------QGFQSMYTFVTSHLPPGFNEYD------FVPESFDRDKT 191 (550)
T ss_dssp EEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB--------TTBCBHHHHHHHHCCTTCCTTT------CCCCCCCTTTS
T ss_pred EEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc--------cCcccHHHHhhccccccccccc------cCCCCCCCCCC
Confidence 444567788888887788888888887543211 1235677776543321110000 00112234689
Q ss_pred EEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---chh
Q 010017 86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVR 159 (520)
Q Consensus 86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~~~ 159 (520)
+++|+|||||||.||||++||+++.+.+...... +++.++|++++++|++|.+++...+.++..|+++++. ++.
T Consensus 192 ~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~ 271 (550)
T 3rix_A 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE 271 (550)
T ss_dssp EEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHH
T ss_pred EEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 9999999999999999999999998877766544 4678899999999999999998888889999999884 678
Q ss_pred hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017 160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 239 (520)
Q Consensus 160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (520)
.+++.|+++++|+++++|+++..+.......
T Consensus 272 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------- 302 (550)
T 3rix_A 272 LFLRSLQDYKIQSALLVPTLFSFFAKSTLID------------------------------------------------- 302 (550)
T ss_dssp HHHHHHHHTTCSEEEECHHHHHHHHHCCGGG-------------------------------------------------
T ss_pred HHHHHHHHcCCeEEEeCcHHHHHHHhCcccc-------------------------------------------------
Confidence 8999999999999999999998875421000
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCe-eeecccccccccceeccCCCC
Q 010017 240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTC 317 (520)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~ 317 (520)
...+..+|.+++||+++++++ +++.+.++.. +++.||+||++..++......
T Consensus 303 --------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~ 356 (550)
T 3rix_A 303 --------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 356 (550)
T ss_dssp --------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC
T ss_pred --------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC
Confidence 012334589999999999987 5666778875 899999999998887776666
Q ss_pred CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCcc
Q 010017 318 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR 397 (520)
Q Consensus 318 ~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~ 397 (520)
...+++|+|+|+++++|+|+++++++++|+.|||+|+||++++|||++|+.|++.|+.+|||+|||+|++++
T Consensus 357 ~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~-------- 428 (550)
T 3rix_A 357 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE-------- 428 (550)
T ss_dssp CCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT--------
T ss_pred CCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC--------
Confidence 677899999999999999988899999999999999999999999999999999998899999999999999
Q ss_pred ccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcCC
Q 010017 398 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD 473 (520)
Q Consensus 398 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~ 473 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++ .+.++|++.++
T Consensus 429 --dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~--------------- 490 (550)
T 3rix_A 429 --DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG--------------- 490 (550)
T ss_dssp --TCCEEEC-----------------------------------------------------------------------
T ss_pred --CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC---------------
Confidence 8999999999999997 9999999999999999999999999998765 34577776544
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCccc-cEEEecCCCCcCCCcc
Q 010017 474 ASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCL 518 (520)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~~~~~~~~g~l 518 (520)
...+.+++++++++++..+. .++ .|.++++.+...|||+
T Consensus 491 -~~~~~~~l~~~~~~~l~~~~-----~~~~~i~~v~~lP~t~~GKi 530 (550)
T 3rix_A 491 -KTMTEKEIVDYVASQVTTAK-----KLRGGVVFVDEVPKGLTGKL 530 (550)
T ss_dssp ----------------------------------------------
T ss_pred -CCCCHHHHHHHHHHhccccc-----ccCCceEEEeecCCCCCcce
Confidence 34567889999999998876 344 5889999999999987
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=9.9e-58 Score=483.06 Aligned_cols=392 Identities=23% Similarity=0.352 Sum_probs=310.4
Q ss_pred EEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCC-
Q 010017 3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI- 81 (520)
Q Consensus 3 ~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (520)
+++++ +++..+.+.+....++..+.++++++.... ....++++++..+.....+. . . ......
T Consensus 126 ~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~ 189 (548)
T 2d1s_A 126 TIVFS-SKKGLDKVITVQKTVTTIKTIVILDSKVDY--------RGYQCLDTFIKRNTPPGFQA-----S-S-FKTVEVD 189 (548)
T ss_dssp SEEEE-CTTTHHHHHHHHHHSTTCCEEEETTCSSCB--------TTBCBHHHHHHHTSCTTCCG-----G-G-CCCCCCC
T ss_pred eEEEE-cHHHHHHHHHHhcCCCCCCEEEEeCCcccc--------cccccHHHHHhcCccccCCc-----c-c-ccccccC
Confidence 34444 456667776665556656666665432100 01245777765432110000 0 0 000011
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEec-
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT- 156 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~~- 156 (520)
.++|+++|+|||||||.||||++||+++.+.+...... +++.++|++++++|++|.+++... +.++ .|+++++.
T Consensus 190 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 23999999999999999999999999999888776665 678899999999999999998764 4456 99998874
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 234 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
++..+++.|+++++|+++++|+++..+.+.....
T Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------- 304 (548)
T 2d1s_A 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN-------------------------------------------- 304 (548)
T ss_dssp CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG--------------------------------------------
T ss_pred CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccc--------------------------------------------
Confidence 6889999999999999999999998875420000
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017 235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA 312 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~ 312 (520)
...+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++..++.
T Consensus 305 -------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 353 (548)
T 2d1s_A 305 -------------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII 353 (548)
T ss_dssp -------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred -------------------------------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee
Confidence 012233489999999999987 5666677 6889999999999877766
Q ss_pred cCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCC
Q 010017 313 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 392 (520)
Q Consensus 313 ~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~ 392 (520)
........+++|+|+|+++++|+|+++++++++|+.|||+++||++++|||++|+.|++.|+.+|||+|||+|++++
T Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~--- 430 (548)
T 2d1s_A 354 TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE--- 430 (548)
T ss_dssp CCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT---
T ss_pred cCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC---
Confidence 54444567899999999999999987899999999999999999999999999999999998899999999999998
Q ss_pred CCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcC
Q 010017 393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS 468 (520)
Q Consensus 393 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~ 468 (520)
||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++ .+.|+|++.++
T Consensus 431 -------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~---------- 492 (548)
T 2d1s_A 431 -------EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG---------- 492 (548)
T ss_dssp -------TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT----------
T ss_pred -------CCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCC----------
Confidence 8999999999999996 9999999999999999999999999998654 56788888654
Q ss_pred CCcCCccccChHHHHHHHHHHHHHHhccCCCccc-cEEEecCCCCcCCCcc
Q 010017 469 IVHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCL 518 (520)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~~~~~~~~g~l 518 (520)
...+.++++++++++|+.|+. ++ +|.++++.+...+||+
T Consensus 493 ------~~~~~~~l~~~~~~~l~~~~~-----p~~~i~~v~~lP~t~~GKi 532 (548)
T 2d1s_A 493 ------KNMTEKEVMDYVASQVSNAKR-----LRGGVRFVDEVPKGLTGKI 532 (548)
T ss_dssp ------CCCCHHHHHHHHHTTSCGGGS-----CTTCEEECSSCCBCTTSCB
T ss_pred ------CCCCHHHHHHHHHHhcccccc-----ccccEEEccCCCCCCcchh
Confidence 345788999999999999984 46 7999999999999997
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=7.6e-58 Score=483.03 Aligned_cols=332 Identities=29% Similarity=0.467 Sum_probs=285.5
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh----hcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEE
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM 154 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~ 154 (520)
...++|+++|+|||||||.||||++||+++.+.+..... .+++.++|++++++|++|.+++.. .+.++..|++++
T Consensus 174 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 253 (536)
T 3ni2_A 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPIL 253 (536)
T ss_dssp CCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEE
T ss_pred CCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEE
Confidence 457899999999999999999999999999887665543 356788999999999999999865 456788999988
Q ss_pred ec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017 155 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 231 (520)
Q Consensus 155 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (520)
+. ++..+++.++++++|++.++|+++..+.+....
T Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------------ 291 (536)
T 3ni2_A 254 IMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL------------------------------------------ 291 (536)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG------------------------------------------
T ss_pred EcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc------------------------------------------
Confidence 84 678899999999999999999999877542100
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccc
Q 010017 232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPV 309 (520)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~ 309 (520)
....+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++.+
T Consensus 292 ---------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~ 338 (536)
T 3ni2_A 292 ---------------------------------DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPV 338 (536)
T ss_dssp ---------------------------------GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSE
T ss_pred ---------------------------------ccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchh
Confidence 0012334589999999999987 5556667 8999999999999876
Q ss_pred eeccC-----CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCce
Q 010017 310 IAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI 384 (520)
Q Consensus 310 ~~~~~-----~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDl 384 (520)
++... +.....+++|+|+++++++|+|+++++++++|+.|||+++||++++|||++|+.|++.|+.+|||+|||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl 418 (536)
T 3ni2_A 339 LAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDI 418 (536)
T ss_dssp EEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEE
T ss_pred hhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccE
Confidence 55431 2234568999999999999999888999999999999999999999999999999999988999999999
Q ss_pred eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHH
Q 010017 385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 460 (520)
Q Consensus 385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~ 460 (520)
|++++ ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++ .+.|+|++.++
T Consensus 419 ~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~-- 485 (536)
T 3ni2_A 419 GYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK-- 485 (536)
T ss_dssp EEECT----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--
T ss_pred EEEcC----------CceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC--
Confidence 99999 8999999999999997 9999999999999999999999999997543 56788887654
Q ss_pred HHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 461 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.++++++++++|+.|+ .+++|.++++.+...|||+
T Consensus 486 --------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi 524 (536)
T 3ni2_A 486 --------------SQATEDEIKQYISKQVIFYK-----RIKRVFFIEAIPKAPSGKI 524 (536)
T ss_dssp --------------CCCCHHHHHHHHHTTSCGGG-----CCSEEEECSCCCBCTTSCB
T ss_pred --------------CCCCHHHHHHHHHHhccCCc-----cccEEEEEecCCCCCCCCe
Confidence 45678899999999999998 5577999999999999997
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.2e-57 Score=477.48 Aligned_cols=384 Identities=23% Similarity=0.394 Sum_probs=288.4
Q ss_pred EEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCC-
Q 010017 4 ALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIG- 82 (520)
Q Consensus 4 ~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (520)
++++ +..+.+.+.+.....+ ++.+++.++. ..+++++...+.... +.....
T Consensus 127 ~~i~-~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~-------------~~~~~~~ 178 (549)
T 3g7s_A 127 TLVV-HSMLYENFKPVLEKTG-VERVFVVGGE-------------VNSLSEVMDSGSEDF-------------ENVKVNP 178 (549)
T ss_dssp EEEE-EGGGHHHHHHHHTTSC-CCEEEEETCS-------------SSCHHHHHHHSCSCC-------------CCCCCCT
T ss_pred EEEE-ChHHHHHHHHHHhhCC-CcEEEEeCCC-------------CcCHHHHHhcCcccc-------------ccccCCC
Confidence 3444 4566777777665544 5666665321 135677665432210 112223
Q ss_pred CCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---chh
Q 010017 83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVR 159 (520)
Q Consensus 83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~~~ 159 (520)
++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|.+++...+.++..|+++++. ++.
T Consensus 179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 258 (549)
T 3g7s_A 179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQE 258 (549)
T ss_dssp TTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHH
T ss_pred CCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHH
Confidence 49999999999999999999999999999988888888999999999999999999988877788889988874 688
Q ss_pred hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017 160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 239 (520)
Q Consensus 160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (520)
.+++.|+++++|+++++|+++..+++.......
T Consensus 259 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------------------------- 291 (549)
T 3g7s_A 259 MLAENIEKYKGTFSWAVPPALNVLVNTLESSNK----------------------------------------------- 291 (549)
T ss_dssp HHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-----------------------------------------------
T ss_pred HHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-----------------------------------------------
Confidence 999999999999999999999988664322100
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHH----hC---Ceeeeccccccccccee
Q 010017 240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA----IG---VKVQVGYGLTESSPVIA 311 (520)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~----~g---~~v~~~YG~TE~~~~~~ 311 (520)
...+..+|.+++||+++++++ +++.+. ++ +++++.||+||++.+++
T Consensus 292 --------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 345 (549)
T 3g7s_A 292 --------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT 345 (549)
T ss_dssp --------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred --------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence 011233489999999999887 455554 56 89999999999998777
Q ss_pred ccCCCC-CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccC--CCC--ccccCceee
Q 010017 312 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNTGDIGW 386 (520)
Q Consensus 312 ~~~~~~-~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~--~~g--w~~TGDlg~ 386 (520)
...... ...+++|+|+++++++|+|+++++++++|+.|||+|+||++++|||++|+.|+++|. .+| ||+|||+|+
T Consensus 346 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~ 425 (549)
T 3g7s_A 346 TNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGF 425 (549)
T ss_dssp ECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEE
T ss_pred cCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEE
Confidence 655433 456789999999999999988899999999999999999999999999999999983 467 999999999
Q ss_pred eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017 387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM 462 (520)
Q Consensus 387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~ 462 (520)
+++ ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++ .+.|+|++.++.
T Consensus 426 ~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--- 491 (549)
T 3g7s_A 426 IDE----------EGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY--- 491 (549)
T ss_dssp ECT----------TSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT---
T ss_pred EcC----------CceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc---
Confidence 999 8999999999999997 9999999999999999999999999998765 466888886531
Q ss_pred HHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 463 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
....+.++++++++++|+.|+.| +.|.++++.+...|||+
T Consensus 492 -----------~~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi 531 (549)
T 3g7s_A 492 -----------RGKVDEEDIIEWVRERISGYKRV-----REVEFVEELPRTASGKL 531 (549)
T ss_dssp -----------TTSCCHHHHHHHHHTTCC----------CCCCEEEECC-------
T ss_pred -----------cCcCCHHHHHHHHHHhccCcccc-----eEEEEeccCCCCCCcCE
Confidence 13467899999999999999844 67888999999999997
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2e-57 Score=476.00 Aligned_cols=330 Identities=27% Similarity=0.408 Sum_probs=284.3
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-- 156 (520)
...++|+++|+|||||||.||||++||+++.+....+...+++.++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 230 (503)
T 4fuq_A 151 DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK 230 (503)
T ss_dssp CCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS
T ss_pred CCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC
Confidence 456899999999999999999999999999999888888899999999999999999998765 45567888888774
Q ss_pred -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017 157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 235 (520)
Q Consensus 157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (520)
++..+++.++ ++|+++++|+++..++.....
T Consensus 231 ~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~---------------------------------------------- 262 (503)
T 4fuq_A 231 FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL---------------------------------------------- 262 (503)
T ss_dssp CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC----------------------------------------------
T ss_pred CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc----------------------------------------------
Confidence 6788888887 899999999999887542100
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017 236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR 314 (520)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~ 314 (520)
....++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..++...
T Consensus 263 -----------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 313 (503)
T 4fuq_A 263 -----------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY 313 (503)
T ss_dssp -----------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS
T ss_pred -----------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC
Confidence 0012233589999999999887 5666778999999999999987654433
Q ss_pred CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017 315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 394 (520)
Q Consensus 315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~ 394 (520)
......+++|+|+|+++++|+|+++++++|+|+.|||+++||++++|||++|+.|+++|..+|||+|||+|++++
T Consensus 314 ~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----- 388 (503)
T 4fuq_A 314 DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----- 388 (503)
T ss_dssp SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT-----
T ss_pred CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC-----
Confidence 344556899999999999999988899999999999999999999999999999999999899999999999999
Q ss_pred CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCC
Q 010017 395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV 470 (520)
Q Consensus 395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~ 470 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++ .+.++|+++++
T Consensus 389 -----dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~------------ 450 (503)
T 4fuq_A 389 -----RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG------------ 450 (503)
T ss_dssp -----TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT------------
T ss_pred -----CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC------------
Confidence 8999999999999996 9999999999999999999999999997653 46788888754
Q ss_pred cCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 471 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.++++++++++|+.|+ .+++|.++++.+...|||+
T Consensus 451 ----~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 489 (503)
T 4fuq_A 451 ----ATIDEAQVLHGLDGQLAKFK-----MPKKVIFVDDLPRNTMGKV 489 (503)
T ss_dssp ----CCCCHHHHHHHHBTTBCGGG-----CCSEEEEESCCCBCTTSCB
T ss_pred ----CCCCHHHHHHHHHhhcccCC-----CCCEEEEECCCCCCcccce
Confidence 45678899999999999998 4578999999999999997
No 6
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.3e-57 Score=477.66 Aligned_cols=379 Identities=23% Similarity=0.366 Sum_probs=269.2
Q ss_pred EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017 6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 85 (520)
Q Consensus 6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (520)
+++++++.+.+.+....++.++.++++++.... ...++++++..... .....++|
T Consensus 123 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----------------~~~~~~~~ 177 (541)
T 1v25_A 123 LLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE---------GYLAYEEALGEEAD----------------PVRVPERA 177 (541)
T ss_dssp EEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT---------TCEEHHHHCCSCCC----------------CCCCCTTS
T ss_pred EEEChhHHHHHHHHHhhCCCccEEEEecCCCCc---------ccccHHHHhhccCC----------------cccCCCCC
Confidence 344567777777777677778888776432110 12456655322110 12346799
Q ss_pred EEEEEecCCCCCCchhhhhchHHHHHHHHHh--hhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----chh
Q 010017 86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVR 159 (520)
Q Consensus 86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~--~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----~~~ 159 (520)
+++|+|||||||.||||++||+++.+..... ...+++.++|++++++|++|.+++...+.++..|+++++. ++.
T Consensus 178 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~ 257 (541)
T 1v25_A 178 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPA 257 (541)
T ss_dssp EEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHH
T ss_pred cEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHH
Confidence 9999999999999999999999998766552 3456788999999999999999987677788899998874 678
Q ss_pred hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017 160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 239 (520)
Q Consensus 160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (520)
.+++.|+++++|+++++|+++..+++.....
T Consensus 258 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------- 288 (541)
T 1v25_A 258 SLVELFDGEGVTFTAGVPTVWLALADYLEST------------------------------------------------- 288 (541)
T ss_dssp HHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHhcCeeEEecchHHHHHHHhhhhcc-------------------------------------------------
Confidence 8999999999999999999998886542211
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCC--
Q 010017 240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-- 317 (520)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-- 317 (520)
...+..+|.+++||+++++++.+.++.+|+++++.||+||++..++......
T Consensus 289 --------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~ 342 (541)
T 1v25_A 289 --------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHL 342 (541)
T ss_dssp --------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGG
T ss_pred --------------------------CCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecccccccc
Confidence 0123345899999999999985444778999999999999987766554321
Q ss_pred ---------CCccccccCcCCeEEEEEeCCCCCcCCC--CCccEEEEecCCCCccccCCchhhhcccCCCCccccCceee
Q 010017 318 ---------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 386 (520)
Q Consensus 318 ---------~~~~~~G~~~~~~~v~ivd~~~~~~~~~--g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~ 386 (520)
...+++|+|+|+++++|+|+ ++++++. ++.|||+++||+++.|||++|+.|+++|..+|||+|||+|+
T Consensus 343 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~ 421 (541)
T 1v25_A 343 ESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV 421 (541)
T ss_dssp TTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEE
T ss_pred cccCccccccccCCCCCcCCCcEEEEECC-CCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEE
Confidence 12478999999999999995 5788874 36899999999999999999999999998899999999999
Q ss_pred eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017 387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM 462 (520)
Q Consensus 387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~ 462 (520)
+++ ||+++|+||+||+||. +|+||+|.|||++|.+||.|.+|+|++.+++ .+.|+|++. +
T Consensus 422 ~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~---- 485 (541)
T 1v25_A 422 WDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-G---- 485 (541)
T ss_dssp ECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred EcC----------CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-C----
Confidence 998 8999999999999996 9999999999999999999999999998654 567877765 2
Q ss_pred HHHHcCCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 463 AAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.+++++++++ .|+.|+ .++.|.++++.+...+||+
T Consensus 486 ------------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 525 (541)
T 1v25_A 486 ------------EKPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKF 525 (541)
T ss_dssp ---------------------------CCCTTT-----SCSBC--------------
T ss_pred ------------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeCCCCCCCccCe
Confidence 23355678888888 788777 4577889999999999987
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.3e-55 Score=469.40 Aligned_cols=392 Identities=19% Similarity=0.213 Sum_probs=298.7
Q ss_pred cEEEEEcChh-hHHHHHHHhccCCCc-eEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccC
Q 010017 2 CVALAVENPE-FFNRIAETLCSKAAM-RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYE 79 (520)
Q Consensus 2 ~~~~vv~~~~-~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (520)
++++|+.... ..+.+.++...++.+ ..++.+++... ....++.+++.......... ....
T Consensus 159 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~---------~~~~ 220 (580)
T 3etc_A 159 LKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL---------EGWIDFRKELEESSPIFERP---------TGEV 220 (580)
T ss_dssp CCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC---------TTCEEHHHHHHHSCSCCCCC---------CGGG
T ss_pred CCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc---------cccccHHHHHhhCCcccccC---------cccc
Confidence 3455554332 235555555555555 55555543211 12356777665432211000 0012
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-- 156 (520)
...++|+++|+|||||||.||||+++|.++...+......+++.+++++++.+|++|..+... .+.++..|+++++.
T Consensus 221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 300 (580)
T 3etc_A 221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY 300 (580)
T ss_dssp SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 457899999999999999999999999998887777666778899999999999999888765 45678889988763
Q ss_pred ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017 157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 233 (520)
Q Consensus 157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
++..+++.|+++++|+++++|+++..+.... .
T Consensus 301 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------~--------------------------------------- 335 (580)
T 3etc_A 301 DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------L--------------------------------------- 335 (580)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------C---------------------------------------
T ss_pred CCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------c---------------------------------------
Confidence 5788999999999999999999998775410 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceec
Q 010017 234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 312 (520)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~ 312 (520)
....+..+|.+++||+++++++ +++.+.+|++++++||+||++..++.
T Consensus 336 -------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 384 (580)
T 3etc_A 336 -------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384 (580)
T ss_dssp ----------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred -------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence 0012334599999999999987 66667789999999999999877766
Q ss_pred cCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec-----CCCCccccCCchhhhcccCCCCccccCceeee
Q 010017 313 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387 (520)
Q Consensus 313 ~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g-----p~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~ 387 (520)
.+......+++|+|+|+++++|+|+ +++++|+|+.|||+++| +++++|||++|+.|+++|. +|||+|||+|++
T Consensus 385 ~~~~~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~ 462 (580)
T 3etc_A 385 FPWMEPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWM 462 (580)
T ss_dssp CTTSCCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEE
T ss_pred CCCCCCCCCccccCCCCCEEEEECC-CCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEE
Confidence 5555567789999999999999995 58999999999999997 7899999999999999995 899999999999
Q ss_pred ccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHH
Q 010017 388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA 463 (520)
Q Consensus 388 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~ 463 (520)
++ ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++ .+.|+|++.++.
T Consensus 463 d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~---- 527 (580)
T 3etc_A 463 DE----------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY---- 527 (580)
T ss_dssp CT----------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----
T ss_pred CC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC----
Confidence 99 8999999999999997 8999999999999999999999999998664 466888876541
Q ss_pred HHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 464 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+...+++++++++.|+.|+ .++.|.++++.+...|||+
T Consensus 528 ---------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~sGKi 568 (580)
T 3etc_A 528 ---------TPSDSLKNELQDHVKNVTAPYK-----YPRIIEFVPELPKTISGKI 568 (580)
T ss_dssp ---------CCCHHHHHHHHHHHHHHSCGGG-----CCSEEEEECC---------
T ss_pred ---------CCCHHHHHHHHHHHHhhCCCcc-----CCeEEEEeCCCCCCCCcCC
Confidence 0011234678888888888888 4577999999999999997
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.1e-56 Score=470.84 Aligned_cols=330 Identities=19% Similarity=0.298 Sum_probs=281.8
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec-
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~- 156 (520)
...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 257 (539)
T 1mdb_A 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257 (539)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred CCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC
Confidence 457899999999999999999999999999998888888888999999999999999999875 56678999999884
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 234 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
++..+++.|+++++|++.++|+++..+++.....
T Consensus 258 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------- 293 (539)
T 1mdb_A 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------------------------- 293 (539)
T ss_dssp SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------------------------------
T ss_pred CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------------------------------
Confidence 5788999999999999999999998886532110
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017 235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR 313 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~ 313 (520)
...+..+|.+++||+++++++ +++.+.+|+++++.||+||++...+..
T Consensus 294 -------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 342 (539)
T 1mdb_A 294 -------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRL 342 (539)
T ss_dssp -------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCT
T ss_pred -------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCC
Confidence 012234589999999999987 556667899999999999965433221
Q ss_pred CCC-CCCccccccCcCC-eEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017 314 RPT-CNVLGSVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391 (520)
Q Consensus 314 ~~~-~~~~~~~G~~~~~-~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~ 391 (520)
... ....+++|+|+++ .+++|+| ++++++++|+.|||+++||++++|||++|+.|+++|..+|||+|||+|++++
T Consensus 343 ~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~-- 419 (539)
T 1mdb_A 343 DDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR-- 419 (539)
T ss_dssp TSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT--
T ss_pred CCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC--
Confidence 111 1234789999975 5899999 4689999999999999999999999999999999998899999999999998
Q ss_pred CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL 467 (520)
Q Consensus 392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~ 467 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++ .+.|+|++..
T Consensus 420 --------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~---------- 480 (539)
T 1mdb_A 420 --------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD---------- 480 (539)
T ss_dssp --------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS----------
T ss_pred --------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC----------
Confidence 8999999999999995 9999999999999999999999999998654 5678888752
Q ss_pred CCCcCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 468 SIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.++++++++++ |+.|+ .+++|.++++.+...|||+
T Consensus 481 -------~~~~~~~l~~~l~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 520 (539)
T 1mdb_A 481 -------EAPKAAELKAFLRERGLAAYK-----IPDRVEFVESFPQTGVGKV 520 (539)
T ss_dssp -------SCCCHHHHHHHHHHTTCCGGG-----SCSEEEECSSCCBCTTSCB
T ss_pred -------CCCCHHHHHHHHHhCCCCccc-----CCCEEEEeccCCCCCCcCE
Confidence 235678999999997 99998 4578999999999999997
No 9
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.9e-55 Score=467.36 Aligned_cols=387 Identities=18% Similarity=0.237 Sum_probs=305.4
Q ss_pred EEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCC
Q 010017 3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIG 82 (520)
Q Consensus 3 ~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (520)
+++|+ ++++.+.+.++...++.++.++++++.... ....+++++...... .+.....
T Consensus 148 ~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------------~~~~~~~ 204 (570)
T 3c5e_A 148 KAIVA-GDEVIQEVDTVASECPSLRIKLLVSEKSCD---------GWLNFKKLLNEASTT-------------HHCVETG 204 (570)
T ss_dssp SEEEE-ETTTHHHHHHHGGGCTTCCEEEEESSSCCT---------TSEEHHHHHHHSCSC-------------CCCCCCB
T ss_pred eEEEe-chHHHHHHHHHhhcCCceeEEEEecccCcc---------ccccHHHHhhccccc-------------ccccCCC
Confidence 44555 456777787777777888888776532111 134677776532211 0112356
Q ss_pred CCCEEEEEecCCCCCCchhhhhchHHHHH-HHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec----
Q 010017 83 SDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---- 156 (520)
Q Consensus 83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~---- 156 (520)
++|+++|+|||||||.||||++||+.+.. ..... ..+++.++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 205 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 283 (570)
T 3c5e_A 205 SQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK 283 (570)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSS
T ss_pred CCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCC
Confidence 89999999999999999999999994332 33333 6678899999999999999999874 56678889988764
Q ss_pred -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017 157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 235 (520)
Q Consensus 157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (520)
++..+++.|+++++|+++++|+++..+.+.. ..
T Consensus 284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------~~---------------------------------------- 317 (570)
T 3c5e_A 284 FDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD------LS---------------------------------------- 317 (570)
T ss_dssp CCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC------TT----------------------------------------
T ss_pred CCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc------cc----------------------------------------
Confidence 5788999999999999999999998775420 00
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017 236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR 314 (520)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~ 314 (520)
...+..+|.+++||+++++++ +++.+.+|+++++.||+||++..++...
T Consensus 318 ------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 367 (570)
T 3c5e_A 318 ------------------------------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK 367 (570)
T ss_dssp ------------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT
T ss_pred ------------------------------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCc
Confidence 011233489999999999887 6666678999999999999987665544
Q ss_pred CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEe-----cCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017 315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR-----GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389 (520)
Q Consensus 315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~-----gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~ 389 (520)
......+++|+|+++++++|+|+ +++++|+|+.|||+++ ||+++.|||++|+.|++.|. +|||+|||+|++++
T Consensus 368 ~~~~~~~~vG~p~~~~~v~i~d~-~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~ 445 (570)
T 3c5e_A 368 TMKIKPGYMGTAASCYDVQIIDD-KGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDE 445 (570)
T ss_dssp TSCCCTTCCCEECTTCCEEEECT-TSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECT
T ss_pred ccccCCCcccccCCCceEEEECC-CCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcC
Confidence 33456689999999999999995 5899999999999999 99999999999999999995 89999999999998
Q ss_pred CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHH
Q 010017 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK 465 (520)
Q Consensus 390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~ 465 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++ .+.|+|++.++..
T Consensus 446 ----------dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----- 509 (570)
T 3c5e_A 446 ----------DGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL----- 509 (570)
T ss_dssp ----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT-----
T ss_pred ----------CceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc-----
Confidence 8999999999999996 9999999999999999999999999998653 5678888865410
Q ss_pred HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
....+...+++++++++.|+.|+ .++.|.++++.+...+||+
T Consensus 510 ------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 551 (570)
T 3c5e_A 510 ------SHDPEQLTKELQQHVKSVTAPYK-----YPRKIEFVLNLPKTVTGKI 551 (570)
T ss_dssp ------TSCHHHHHHHHHHHHHHHSCGGG-----SCSEEEEESCCCBCTTCCB
T ss_pred ------CcchHHHHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCCcCC
Confidence 00011235678888888888888 4578999999999999997
No 10
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.7e-56 Score=464.39 Aligned_cols=335 Identities=26% Similarity=0.365 Sum_probs=277.2
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 156 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~- 156 (520)
....++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 3457899999999999999999999999999999888888889999999999999999999876 56678999998874
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 234 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
++..+++.+ ++++|+++++|+++..+....... +.
T Consensus 230 ~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~----~~-------------------------------------- 266 (505)
T 3nyq_A 230 RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPAD----PE-------------------------------------- 266 (505)
T ss_dssp SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGC----HH--------------------------------------
T ss_pred CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcC----ch--------------------------------------
Confidence 567788888 789999999999998886532110 00
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017 235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR 313 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~ 313 (520)
....+..+|.+++||++++.++ +++.+.+|++++|.||+||++..++..
T Consensus 267 ------------------------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 316 (505)
T 3nyq_A 267 ------------------------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVR 316 (505)
T ss_dssp ------------------------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred ------------------------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccC
Confidence 0001112388999999999987 566667899999999999998777665
Q ss_pred CCCCCCccccccCcCCeEEEEEeCCCCCcCCC---CCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017 314 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390 (520)
Q Consensus 314 ~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~---g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~ 390 (520)
.......+++|+|+++++++|+|+ ++++++. |+.|||+++||+++.|||++|+.|+++|..+|||+|||+|++++
T Consensus 317 ~~~~~~~~~vG~p~~~~~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~- 394 (505)
T 3nyq_A 317 ADGEPRAGTVGVPLPGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP- 394 (505)
T ss_dssp TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT-
T ss_pred CCCCCCCCCcccCCCCCEEEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC-
Confidence 555566789999999999999995 4777765 89999999999999999999999999999899999999999999
Q ss_pred CCCCCccccCcEEEEEccc-cceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHH
Q 010017 391 HSRGRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAK 465 (520)
Q Consensus 391 ~~~~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~ 465 (520)
||+++|+||+ ||+||. +|++|+|.|||++|.+||.|.+|+|++.++ +.+.|+|++..+
T Consensus 395 ---------dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~------- 457 (505)
T 3nyq_A 395 ---------DGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP------- 457 (505)
T ss_dssp ---------TSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST-------
T ss_pred ---------CccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC-------
Confidence 8999999998 588986 999999999999999999999999999865 357899998642
Q ss_pred HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
....+.++++++++++|+.|+. ++.|.++++.+...|||+
T Consensus 458 --------~~~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi 497 (505)
T 3nyq_A 458 --------AAPPALGTLADHVAARLAPHKR-----PRVVRYLDAVPRNDMGKI 497 (505)
T ss_dssp --------TSCCCHHHHHHHHHHHTCGGGS-----CSEEEECSCCCC------
T ss_pred --------CCCCCHHHHHHHHHhhCCCCcC-----ccEEEEECCCCCCCCcCe
Confidence 1345678999999999999994 478999999999999997
No 11
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=9.2e-56 Score=464.89 Aligned_cols=329 Identities=26% Similarity=0.367 Sum_probs=279.5
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
....++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~ 244 (517)
T 3r44_A 165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ 244 (517)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCC
Confidence 345789999999999999999999999999999988888888999999999999999999998766666689988874
Q ss_pred -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017 157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 235 (520)
Q Consensus 157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (520)
++..+++.++++++|++.++|+++..+.......
T Consensus 245 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------- 279 (517)
T 3r44_A 245 FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA--------------------------------------------- 279 (517)
T ss_dssp CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH---------------------------------------------
T ss_pred CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc---------------------------------------------
Confidence 6889999999999999999999998875531110
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCC
Q 010017 236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP 315 (520)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~ 315 (520)
...+..+|.+++||+++++++.+.+...++++++.||+||++..++....
T Consensus 280 ------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 329 (517)
T 3r44_A 280 ------------------------------ELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS 329 (517)
T ss_dssp ------------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECG
T ss_pred ------------------------------cCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCC
Confidence 01223358999999999999866665569999999999999876665443
Q ss_pred C--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCC
Q 010017 316 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 393 (520)
Q Consensus 316 ~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~ 393 (520)
. ....+++|+|.++++++++|+ ++++++.| .|||+++||+++.|||++|+.|+++| .+|||+|||+|++++
T Consensus 330 ~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~---- 402 (517)
T 3r44_A 330 EDALRKAGSAGRATMFTDVAVRGD-DGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDD---- 402 (517)
T ss_dssp GGTTTTTTCCBEECTTEEEEEECT-TSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECT----
T ss_pred ccccccCCCCCcCCCCeEEEEECC-CCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcC----
Confidence 2 345688999999999999994 58888988 89999999999999999999999999 589999999999999
Q ss_pred CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce----eEEEEEcChHHHHHHHHHcCC
Q 010017 394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSI 469 (520)
Q Consensus 394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~ 469 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++. +.++|+.. +
T Consensus 403 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~-~----------- 463 (517)
T 3r44_A 403 ------EGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD-Q----------- 463 (517)
T ss_dssp ------TSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC-T-----------
T ss_pred ------CeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECC-C-----------
Confidence 8999999999999996 99999999999999999999999999986543 44555332 2
Q ss_pred CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.++++++++++|+.|+. ++.|.++++.+...|||+
T Consensus 464 -----~~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi 502 (517)
T 3r44_A 464 -----NEVSEQQIVEYCGTRLARYKL-----PKKVIFAEAIPRNPTGKI 502 (517)
T ss_dssp -----TTCCHHHHHHHHHHHSCGGGS-----CSEEEECSCCCBCTTCCB
T ss_pred -----CCCCHHHHHHHHHHhCCCCCC-----CCEEEEECCCCCCCCcCc
Confidence 346788999999999999994 478999999999999997
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.3e-55 Score=472.48 Aligned_cols=383 Identities=17% Similarity=0.191 Sum_probs=301.0
Q ss_pred HHHHHHhccCC--CceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEe
Q 010017 14 NRIAETLCSKA--AMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY 91 (520)
Q Consensus 14 ~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 91 (520)
+.+.+++...+ .++.+|+++........ .......|++++...... .+.....++|+++|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~a~ily 263 (652)
T 1pg4_A 200 KNVDDALKNPNVTSVEHVIVLKRTGSDIDW---QEGRDLWWRDLIEKASPE-------------HQPEAMNAEDPLFILY 263 (652)
T ss_dssp HHHHHHHTSTTCCSCCEEEEECSSCCCCCC---CBTTEEEHHHHHTTSCSC-------------CCCCCEETTSEEEEEE
T ss_pred HHHHHHHhcCCcCCCCEEEEEeCCCCcccc---cCCCceeHHHHHhhcCCC-------------CCccccCCCCCEEEEe
Confidence 44555554443 56777777532211100 011235677776532110 1123456899999999
Q ss_pred cCCCCCCchhhhhchHHHHHHHH-HhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-------chhhHH
Q 010017 92 TSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLK 162 (520)
Q Consensus 92 TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-------~~~~~~ 162 (520)
||||||.||||++||++++.... .+...+++.++|++++.+|++|++++.. .+.++..|+++++. ++..++
T Consensus 264 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~ 343 (652)
T 1pg4_A 264 TSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343 (652)
T ss_dssp ECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHH
T ss_pred ccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHH
Confidence 99999999999999999876653 4456688999999999999999999854 66789999998873 467899
Q ss_pred HHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHH
Q 010017 163 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242 (520)
Q Consensus 163 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (520)
+.|+++++|++.++|+++..+.+...... .
T Consensus 344 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------~---------------------- 373 (652)
T 1pg4_A 344 QVVDKHQVNILYTAPTAIRALMAEGDKAI----------------------------E---------------------- 373 (652)
T ss_dssp HHHHHHTCSEEEECHHHHHHHHTTGGGGT----------------------------T----------------------
T ss_pred HHHHHhCCeEEEeCHHHHHHHHhcCcccc----------------------------c----------------------
Confidence 99999999999999999988754210000 0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC---CeeeecccccccccceeccCCC--
Q 010017 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTESSPVIAARRPT-- 316 (520)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~-- 316 (520)
...+..+|.+++||+++++++ +.+.+.+| +++++.||+||++..++...+.
T Consensus 374 -----------------------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~ 430 (652)
T 1pg4_A 374 -----------------------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAI 430 (652)
T ss_dssp -----------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTC
T ss_pred -----------------------cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCc
Confidence 012334599999999999987 55566787 8999999999998766654432
Q ss_pred CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec--CCCCccccCCchhhhcccC--CCCccccCceeeeccCCC
Q 010017 317 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIGWIAPHHS 392 (520)
Q Consensus 317 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g--p~v~~GY~~~~~~t~~~f~--~~gw~~TGDlg~~~~~~~ 392 (520)
....+++|+|+++++++|+|+ ++++++.|+.|||+|+| |++++|||++|+.+.+.|. .+|||+|||+|++++
T Consensus 431 ~~~~~s~G~p~~g~~v~i~d~-~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~--- 506 (652)
T 1pg4_A 431 ELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE--- 506 (652)
T ss_dssp CBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT---
T ss_pred CccCCccccCcCCCeEEEECC-CCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC---
Confidence 345689999999999999995 58999999999999999 7999999999999988763 379999999999999
Q ss_pred CCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHcC
Q 010017 393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLS 468 (520)
Q Consensus 393 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~ 468 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.++ +.+.|+|+++++
T Consensus 507 -------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~---------- 568 (652)
T 1pg4_A 507 -------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG---------- 568 (652)
T ss_dssp -------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT----------
T ss_pred -------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCC----------
Confidence 8999999999999997 899999999999999999999999999754 357899998754
Q ss_pred CCcCCccccC---hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 469 IVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 469 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+ .++++++++++|+.|+ .++.|.++++.+...|||+
T Consensus 569 ------~~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~T~sGKi 610 (652)
T 1pg4_A 569 ------EEPSPELYAEVRNWVRKEIGPLA-----TPDVLHWTDSLPKTRSGKI 610 (652)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTCGGG-----CCSEEEECSCCCBCTTSCB
T ss_pred ------CCCCHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCCccc
Confidence 1122 4688889999998888 4578999999999999997
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.9e-56 Score=471.58 Aligned_cols=330 Identities=23% Similarity=0.327 Sum_probs=208.6
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec-
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~- 156 (520)
...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 457899999999999999999999999999999988888899999999999999999999875 56678899999884
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 234 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
++..+++.|+++++|++.++|+++..+++.....
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------- 302 (544)
T 3o83_A 267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-------------------------------------------- 302 (544)
T ss_dssp SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT--------------------------------------------
T ss_pred CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc--------------------------------------------
Confidence 6788999999999999999999998876542110
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017 235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR 313 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~ 313 (520)
...+..+|.+++||+++++++ +.+.+.+|+++++.||+||++..++..
T Consensus 303 -------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 351 (544)
T 3o83_A 303 -------------------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRL 351 (544)
T ss_dssp -------------------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCT
T ss_pred -------------------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecC
Confidence 012233489999999999987 556667899999999999987544332
Q ss_pred CCCC-CCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017 314 RPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391 (520)
Q Consensus 314 ~~~~-~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~ 391 (520)
.... ...+++|+|+ ++++++|+| ++++++++|+.|||+++||+++.|||++|+.|+++|+.+|||+|||+|++++
T Consensus 352 ~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~-- 428 (544)
T 3o83_A 352 DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP-- 428 (544)
T ss_dssp TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT--
T ss_pred CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC--
Confidence 2211 2347899996 899999999 6789999999999999999999999999999999998899999999999999
Q ss_pred CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL 467 (520)
Q Consensus 392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~ 467 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++ .+.|+|++...
T Consensus 429 --------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~--------- 490 (544)
T 3o83_A 429 --------DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNP--------- 490 (544)
T ss_dssp --------TSCEEEEEEEC-------------------------------------------------------------
T ss_pred --------CCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCC---------
Confidence 8999999999999995 9999999999999999999999999998765 35577776532
Q ss_pred CCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 468 SIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
..+.+++++++++ .|+.|+. +++|.++++.+...|||+
T Consensus 491 --------~~~~~~l~~~~~~~~l~~~~~-----P~~i~~v~~lP~t~~GKi 529 (544)
T 3o83_A 491 --------ELKAVVLRRHLMELGIAQYKL-----PDQIKLIESLPLTAVGKV 529 (544)
T ss_dssp ----------------------------------------------------
T ss_pred --------CCCHHHHHHHHHhCCCCcccC-----CcEEEEeccCCCCCCCCC
Confidence 3456778888888 7999984 477899999999999997
No 14
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.3e-54 Score=453.97 Aligned_cols=330 Identities=24% Similarity=0.270 Sum_probs=278.5
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--- 156 (520)
...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 139 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 218 (511)
T 3e7w_A 139 WVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKD 218 (511)
T ss_dssp SCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHH
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChh
Confidence 45789999999999999999999999999999988888888999999999999999999988788889999999874
Q ss_pred ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017 157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 233 (520)
Q Consensus 157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
++..+++.++++++|++.++|+++..++.....
T Consensus 219 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------------------- 254 (511)
T 3e7w_A 219 AVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF-------------------------------------------- 254 (511)
T ss_dssp HHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC--------------------------------------------
T ss_pred hhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc--------------------------------------------
Confidence 467899999999999999999998876432000
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017 234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA 311 (520)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~ 311 (520)
....+..+|.+++||+++++++ +++.+.+ ++++++.||+||++..++
T Consensus 255 -------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 303 (511)
T 3e7w_A 255 -------------------------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVT 303 (511)
T ss_dssp -------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSE
T ss_pred -------------------------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeee
Confidence 0012233488999999999987 5666677 899999999999987665
Q ss_pred ccCC-----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC-CC--ccccCc
Q 010017 312 ARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGD 383 (520)
Q Consensus 312 ~~~~-----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~-~g--w~~TGD 383 (520)
.... ......++|+|.|+++++|+|+ +++++++|+.|||+++||++++|||++|+.|+++|.. +| ||+|||
T Consensus 304 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGD 382 (511)
T 3e7w_A 304 SVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGD 382 (511)
T ss_dssp EEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEE
T ss_pred EEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCC
Confidence 4321 1234567999999999999995 5899999999999999999999999999999999832 23 799999
Q ss_pred eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHH
Q 010017 384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE 459 (520)
Q Consensus 384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~ 459 (520)
+|++ + ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++ .+.|+|++..+
T Consensus 383 lg~~-~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~- 449 (511)
T 3e7w_A 383 AGFI-Q----------DGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEH- 449 (511)
T ss_dssp EEEE-E----------TTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCC-
T ss_pred eEEc-c----------CCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccc-
Confidence 9998 5 6999999999999997 9999999999999999999999999997543 57788888653
Q ss_pred HHHHHHHcCCCcCCccccC----hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 460 VLMAAKRLSIVHADASELS----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+ .++++++++++|+.|+ .+++|.++++.+...|||+
T Consensus 450 ---------------~~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~v~~lP~t~~GKi 492 (511)
T 3e7w_A 450 ---------------EFEKEFQLTSAIKKELAASLPAYM-----IPRKFIYQDHIQMTANGKI 492 (511)
T ss_dssp ---------------CCSSHHHHHHHHHHHHHHHSCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred ---------------cccchhhHHHHHHHHHHhhCchhh-----CCeeEEEeccCCCCCCcCc
Confidence 1112 3678888888888888 4578999999999999997
No 15
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=5e-55 Score=458.16 Aligned_cols=330 Identities=21% Similarity=0.279 Sum_probs=278.0
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCC--CCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~--~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~ 156 (520)
...++|+++|+|||||||.||||++||+++.+.+..+...+++ .++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 228 (504)
T 1t5h_X 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228 (504)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence 4568999999999999999999999999999888877777777 78899999999999999854 56678899999884
Q ss_pred ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017 157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 233 (520)
Q Consensus 157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
++..+++.|+++++|+++++|+++..+.........
T Consensus 229 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------------------- 267 (504)
T 1t5h_X 229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS----------------------------------------- 267 (504)
T ss_dssp SSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTC-----------------------------------------
T ss_pred CCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccc-----------------------------------------
Confidence 578899999999999999999999888653100000
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceec
Q 010017 234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 312 (520)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~ 312 (520)
...+..+|.+++||+++++++ +.+.+.+++++++.||+||++. +..
T Consensus 268 --------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~ 314 (504)
T 1t5h_X 268 --------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLY 314 (504)
T ss_dssp --------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEE
T ss_pred --------------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccc
Confidence 011233489999999999987 6666778999999999999832 222
Q ss_pred cCCCCCCccccccCcCCeEEEEEeCCCC--CcCCCCCccEEEEe-cCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017 313 RRPTCNVLGSVGHPINHTEIKIVDAETN--EVLPAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389 (520)
Q Consensus 313 ~~~~~~~~~~~G~~~~~~~v~ivd~~~~--~~~~~g~~GEl~v~-gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~ 389 (520)
.. ....+++|.|.++++++|+|++++ +++++|+.|||+++ ||+++.|||++|+.|+++| .+|||+|||+|++++
T Consensus 315 ~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~ 391 (504)
T 1t5h_X 315 MR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP 391 (504)
T ss_dssp EE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT
T ss_pred cc--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECC
Confidence 11 234578999999999999996432 89999999999999 9999999999999999999 689999999999998
Q ss_pred CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHH
Q 010017 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK 465 (520)
Q Consensus 390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~ 465 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++ .+.|+|+++++
T Consensus 392 ----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~------- 453 (504)
T 1t5h_X 392 ----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG------- 453 (504)
T ss_dssp ----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT-------
T ss_pred ----------CceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC-------
Confidence 8999999999999996 9999999999999999999999999998653 57899998754
Q ss_pred HcCCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 466 RLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.+++++++++ +|+.|+ .+++|.++++.+...|||+
T Consensus 454 ---------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 493 (504)
T 1t5h_X 454 ---------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKV 493 (504)
T ss_dssp ---------CCCCHHHHHHHHHTSSCCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred ---------cCcCHHHHHHHHhhccCcccc-----cceEEEEhhhCCCCCCCCE
Confidence 34577899999998 899998 5578999999999999997
No 16
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1e-54 Score=468.95 Aligned_cols=393 Identities=18% Similarity=0.213 Sum_probs=302.0
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCC-CCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEe
Q 010017 13 FNRIAETLCSKAAMRFIILLWGKKS-SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY 91 (520)
Q Consensus 13 ~~~~~~~~~~~~~l~~ii~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 91 (520)
.+.+.+++..++.++++|+++.... ... ........|++++...... .+.....++|+++|+|
T Consensus 206 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~a~ily 269 (663)
T 1ry2_A 206 KRIVDDALRETPGVRHVLVYRKTNNPSVA---FHAPRDLDWATEKKKYKTY-------------YPCTPVDSEDPLFLLY 269 (663)
T ss_dssp HHHHHHHTTSCTTCCEEEEECSSCCSSCC---CCSSSEEEHHHHHTTSCSC-------------CCCCCEETTSCCEEEE
T ss_pred HHHHHHHHHhCCCCceEEEEecCCCCccc---cCCCccccHHHHHhhcCCC-------------CCccccCCCCceEEEe
Confidence 3456666666777888888764321 100 0011235677776432110 1123456899999999
Q ss_pred cCCCCCCchhhhhchHHHHHHHH-HhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-------chhhHH
Q 010017 92 TSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLK 162 (520)
Q Consensus 92 TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-------~~~~~~ 162 (520)
||||||.||||++||+++..... .+...+++.++|++++.+|++|+++..+ .+.++..|+++++. ++..++
T Consensus 270 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~ 349 (663)
T 1ry2_A 270 TSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 349 (663)
T ss_dssp ECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHH
T ss_pred ccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHH
Confidence 99999999999999999876553 4456688999999999999999999854 66789999988774 467899
Q ss_pred HHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHH
Q 010017 163 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242 (520)
Q Consensus 163 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (520)
+.|+++++|++.++|+++..+.+..... ..
T Consensus 350 ~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----------------------------~~---------------------- 379 (663)
T 1ry2_A 350 DIIDEHKVTQFYVAPTALRLLKRAGDSY----------------------------IE---------------------- 379 (663)
T ss_dssp HHHHHTTCSEEEECHHHHHHHTTSCTTS----------------------------SS----------------------
T ss_pred HHHHHcCCCEEEecHHHHHHHHhcCccc----------------------------cc----------------------
Confidence 9999999999999999988774310000 00
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC---CeeeecccccccccceeccCC---
Q 010017 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTESSPVIAARRP--- 315 (520)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~--- 315 (520)
...+..+|.+++||+++++++ +.+.+.+| +++++.||+||++..++...+
T Consensus 380 -----------------------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~ 436 (663)
T 1ry2_A 380 -----------------------NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV 436 (663)
T ss_dssp -----------------------SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC
T ss_pred -----------------------cCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCC
Confidence 012334599999999999988 45555677 899999999999876655433
Q ss_pred CCCCccccccCcCCeEEEEEeCCCCCcCCC-CCccEEEEec--CCCCccccCCchhhhcccCC--CCccccCceeeeccC
Q 010017 316 TCNVLGSVGHPINHTEIKIVDAETNEVLPA-GSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DGWLNTGDIGWIAPH 390 (520)
Q Consensus 316 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~-g~~GEl~v~g--p~v~~GY~~~~~~t~~~f~~--~gw~~TGDlg~~~~~ 390 (520)
.....+++|+|+++++++|+|+++++++++ |+.|||+++| |++++|||++|+.+.+.|.. +|||+|||+|++++
T Consensus 437 ~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~- 515 (663)
T 1ry2_A 437 TPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK- 515 (663)
T ss_dssp CCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT-
T ss_pred cccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC-
Confidence 234578999999999999999757899988 9999999999 58999999999999888743 79999999999999
Q ss_pred CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHH
Q 010017 391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR 466 (520)
Q Consensus 391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~ 466 (520)
||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++ .+.|+|+++++.....
T Consensus 516 ---------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~--- 582 (663)
T 1ry2_A 516 ---------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST--- 582 (663)
T ss_dssp ---------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----------
T ss_pred ---------CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc---
Confidence 8999999999999996 8999999999999999999999999998653 5889999876520000
Q ss_pred cCCCcCCccc--cChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 467 LSIVHADASE--LSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 467 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
.. ... ...++++++++++|+.|+ .++.|.++++.+...|||+
T Consensus 583 ----~~-~~~~~~l~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~T~sGKi 626 (663)
T 1ry2_A 583 ----AT-DDELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKI 626 (663)
T ss_dssp ----------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCB
T ss_pred ----cc-chhHHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCccCc
Confidence 00 000 124678888888888888 5578999999999999997
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=7.2e-55 Score=459.86 Aligned_cols=389 Identities=23% Similarity=0.341 Sum_probs=289.7
Q ss_pred EEEEEcChhhHHHHHHHhccCCCc-eEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCC
Q 010017 3 VALAVENPEFFNRIAETLCSKAAM-RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI 81 (520)
Q Consensus 3 ~~~vv~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (520)
+++++ +.++.+.+.+.....+.+ +.+++.+..... ......++++....... .+....
T Consensus 122 ~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------------~~~~~~ 180 (529)
T 2v7b_A 122 RAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESE-------PRLAPLFEELIDAAAPA-------------AKAAAT 180 (529)
T ss_dssp SEEEE-EGGGHHHHHHHHHCC---CCEEEEECC-------------CCCBHHHHHHTSCCC-------------SSCCCC
T ss_pred eEEEe-chhhhhHHHHHHhhccccCceEEEecccccc-------cccccchhhhhccCCCc-------------ccccCC
Confidence 34444 456666666665545555 556654432110 00123566665422110 111245
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHH-HHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec---
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--- 156 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~-~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--- 156 (520)
.++|+++|+|||||||.||||++||+++ .+........+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~ 260 (529)
T 2v7b_A 181 GCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER 260 (529)
T ss_dssp CTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSC
T ss_pred CCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCC
Confidence 7899999999999999999999999999 555555556678889999999999999999876 45678899998864
Q ss_pred -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017 157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 235 (520)
Q Consensus 157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (520)
++..+++.++++++|+++++|+++..++..... . .
T Consensus 261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~------------------------------------~--- 296 (529)
T 2v7b_A 261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL-----P------------------------------------A--- 296 (529)
T ss_dssp CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC-----C------------------------------------C---
T ss_pred CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc-----c------------------------------------c---
Confidence 678899999999999999999998877532000 0 0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017 236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR 314 (520)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~ 314 (520)
.....+|.+++||++++.++ +++.+.+|+++++.||+||++.+.+...
T Consensus 297 -------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 345 (529)
T 2v7b_A 297 -------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNR 345 (529)
T ss_dssp -------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECC
T ss_pred -------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccc
Confidence 00012488999999999987 5666678999999999999976665554
Q ss_pred CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017 315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 394 (520)
Q Consensus 315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~ 394 (520)
......+++|+|+++++++|+| ++++++|+|+.|||+++||+++.|||++|+.|++.|. +|||+|||+|++++
T Consensus 346 ~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~----- 418 (529)
T 2v7b_A 346 AGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLP----- 418 (529)
T ss_dssp TTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECT-----
T ss_pred cCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECC-----
Confidence 4445668999999999999999 5689999999999999999999999999999999995 89999999999998
Q ss_pred CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC---CceeEEEEEcChHHHHHHHHHcCCCc
Q 010017 395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRLSIVH 471 (520)
Q Consensus 395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~---~~~~~a~vv~~~~~~~~~~~~~~~~~ 471 (520)
||+++|.||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+ .+.+.|+|++..+.
T Consensus 419 -----~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~------------ 480 (529)
T 2v7b_A 419 -----NGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF------------ 480 (529)
T ss_dssp -----TSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC------------
T ss_pred -----CccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC------------
Confidence 8999999999999996 99999999999999999999999999972 23577888876430
Q ss_pred CCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 472 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
.......++++++++++|+.|+ .+++|.++++.+...+||+
T Consensus 481 -~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 521 (529)
T 2v7b_A 481 -APSEILAEELKAFVKDRLAPHK-----YPRDIVFVDDLPKTATGKI 521 (529)
T ss_dssp -CCCHHHHHHHHHHHHTTSCTTT-----SCSEEEEESCCCBCTTSCB
T ss_pred -CcchhHHHHHHHHHHhhcchhh-----CCeEEEEeccCCCCCccch
Confidence 0001123567777877777776 5578999999999999997
No 18
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.2e-55 Score=461.62 Aligned_cols=326 Identities=23% Similarity=0.334 Sum_probs=201.4
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhh-hhcCeeEEe--
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY-- 155 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~-~~~G~~~~~-- 155 (520)
....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.. +..|+.++.
T Consensus 155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~ 234 (509)
T 3ivr_A 155 PEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK 234 (509)
T ss_dssp CCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecc
Confidence 35578999999999999999999999999999998888888999999999999999999999876665 445555554
Q ss_pred cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017 156 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 235 (520)
Q Consensus 156 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (520)
+++..+++.|+++++|++.++|+++..++....
T Consensus 235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----------------------------------------------- 267 (509)
T 3ivr_A 235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----------------------------------------------- 267 (509)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-----------------------------------------------
T ss_pred cCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-----------------------------------------------
Confidence 378899999999999999999999988865310
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHh-CCeeeecccccccccceeccC
Q 010017 236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARR 314 (520)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~ 314 (520)
...+..+|.++.||++ ...+++.+.+ ++++++.||+||++.+++...
T Consensus 268 ------------------------------~~~l~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 315 (509)
T 3ivr_A 268 ------------------------------PAQLASLRAVTGLDTP--ETIERFEATCPNATFWATFGQSETSGLSTFAP 315 (509)
T ss_dssp ------------------------------GGGGTTCCEEEEECCH--HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEE
T ss_pred ------------------------------ccchhhhheecccCCh--HHHHHHHHhcCCCeEEcccCccccccccccCc
Confidence 0122334888888887 4457777777 899999999999987766544
Q ss_pred CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017 315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 394 (520)
Q Consensus 315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~ 394 (520)
.. ....++|+|+++++++|+|+ +++++++|+.|||+++||+++.|||++|+.|+++|. +|||+|||+|++++
T Consensus 316 ~~-~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~----- 387 (509)
T 3ivr_A 316 YR-DRPKSAGRPLFWRTVAVVDA-EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDA----- 387 (509)
T ss_dssp GG-GSTTSCCEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECT-----
T ss_pred cc-cCCCcccccCCCcEEEEECC-CCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECC-----
Confidence 32 22345999999999999995 489999999999999999999999999999999995 89999999999998
Q ss_pred CccccCcEEEEEccc--cceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce----eEEEEEcChHHHHHHHHHcC
Q 010017 395 RSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS 468 (520)
Q Consensus 395 ~~~~~~G~l~i~GR~--~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~ 468 (520)
||+++|+||+ ||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++. +.++|++.++
T Consensus 388 -----dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~---------- 451 (509)
T 3ivr_A 388 -----DGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG---------- 451 (509)
T ss_dssp -----TSCEEEEEEC-----------------------------------------------------------------
T ss_pred -----CceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC----------
Confidence 8999999999 999995 99999999999999999999999999987654 5677777654
Q ss_pred CCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 469 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.+++++++++.|+.|+. +++|.++++.+...|||+
T Consensus 452 ------~~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi 490 (509)
T 3ivr_A 452 ------ESIAADALAEFVASLIARYKK-----PKHVVFVEALPKDAKGAI 490 (509)
T ss_dssp --------------------------------------------------
T ss_pred ------CCCCHHHHHHHHHhhCcccCC-----CcEEEEecCCCCCCCCCc
Confidence 345678899999999999984 467899999999999986
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.5e-54 Score=458.00 Aligned_cols=322 Identities=22% Similarity=0.246 Sum_probs=270.9
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--- 156 (520)
...++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD 257 (563)
T ss_dssp CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence 34679999999999999999999999999998888877888999999999999999999887777889999999874
Q ss_pred ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017 157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 233 (520)
Q Consensus 157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
++..+++.++++++|++.++|+++..+..
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------------------------------------------------ 289 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPPTYVVHLDP------------------------------------------------ 289 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------------------------------------------------
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------------------------------------------------
Confidence 46778899999999999999998765421
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceecc
Q 010017 234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 313 (520)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~ 313 (520)
..+..+|.+++||+++++++.+.+.. .+++++.||+||++..++..
T Consensus 290 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 290 ---------------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTW 335 (563)
T ss_dssp ---------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEE
T ss_pred ---------------------------------cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheee
Confidence 01123488999999999987444433 47899999999998765543
Q ss_pred CCC---CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC------CCccccCce
Q 010017 314 RPT---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDI 384 (520)
Q Consensus 314 ~~~---~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~------~gw~~TGDl 384 (520)
... .....++|+|+|+++++|+| ++++++++|+.|||+++||++++|||++|+.|+++|.. ++||+|||+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence 322 12456899999999999999 56899999999999999999999999999999999843 469999999
Q ss_pred eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHH
Q 010017 385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEV 460 (520)
Q Consensus 385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~ 460 (520)
|++++ ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.++ +.+.|+|++..
T Consensus 415 g~~d~----------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--- 480 (563)
T 1amu_A 415 ARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--- 480 (563)
T ss_dssp EEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS---
T ss_pred EEEcC----------CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC---
Confidence 99999 8999999999999997 999999999999999999999999999764 35778888752
Q ss_pred HHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 461 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
..+.++++++++++|+.|+. ++.|.++++.+...|||+
T Consensus 481 ---------------~~~~~~l~~~l~~~L~~y~~-----P~~i~~v~~lP~t~~GKi 518 (563)
T 1amu_A 481 ---------------HIPLEQLRQFSSEELPTYMI-----PSYFIQLDKMPLTSNGKI 518 (563)
T ss_dssp ---------------CCCHHHHHHHHHHHSCGGGS-----CSEEEECSSCCBCTTSSB
T ss_pred ---------------CCCHHHHHHHHHhhCchhhC-----CcEEEEecccCCCCCcCh
Confidence 34678999999999999984 478999999999999997
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.2e-53 Score=458.26 Aligned_cols=331 Identities=21% Similarity=0.334 Sum_probs=282.3
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec-
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~- 156 (520)
...++|++||+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 180 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 180 PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 456899999999999999999999999999999988888889999999999999999999875 56678899999884
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 234 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
++..+++.++++++|++.++|+++..+.........
T Consensus 260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------ 297 (617)
T 3rg2_A 260 DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES------------------------------------------ 297 (617)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC------------------------------------------
T ss_pred CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc------------------------------------------
Confidence 577889999999999999999999887654221100
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017 235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR 313 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~ 313 (520)
...+..+|.+++||+++++++ +++.+.+|++++|.||+||++..++..
T Consensus 298 -------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 346 (617)
T 3rg2_A 298 -------------------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRL 346 (617)
T ss_dssp -------------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCT
T ss_pred -------------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccC
Confidence 012334589999999999987 666677899999999999987554432
Q ss_pred CCCC-CCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017 314 RPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391 (520)
Q Consensus 314 ~~~~-~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~ 391 (520)
.... ....++|+|+ ++.+++|+| ++++++|+|+.|||+|+||++++||||+|+.|+++|..+|||+|||+|++++
T Consensus 347 ~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~-- 423 (617)
T 3rg2_A 347 DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP-- 423 (617)
T ss_dssp TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT--
T ss_pred CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC--
Confidence 2111 2245789997 788999999 5689999999999999999999999999999999999999999999999998
Q ss_pred CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHc
Q 010017 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRL 467 (520)
Q Consensus 392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~ 467 (520)
||.++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.++ +.+.+++++..
T Consensus 424 --------dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~---------- 484 (617)
T 3rg2_A 424 --------EGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE---------- 484 (617)
T ss_dssp --------TSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS----------
T ss_pred --------CceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC----------
Confidence 8999999999999996 999999999999999999999999998754 35678888752
Q ss_pred CCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 468 SIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
..+.+++++++++ .|+.|+. +..|.++++.+...|||+
T Consensus 485 --------~~~~~~l~~~l~~~~lp~~~v-----P~~~~~v~~lP~t~~GKi 523 (617)
T 3rg2_A 485 --------PLRAVQVRRFLREQGIAEFKL-----PDRVECVDSLPLTAVGKV 523 (617)
T ss_dssp --------CCCHHHHHHHHHTTTCCGGGS-----CSEEEECSCCCBCTTSSB
T ss_pred --------CCCHHHHHHHHHhCCCccccC-----CcEEEEecccCCCCCCCC
Confidence 3567889999988 6888884 478999999999999997
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.8e-55 Score=463.25 Aligned_cols=328 Identities=22% Similarity=0.267 Sum_probs=201.0
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--- 156 (520)
...++|+++|+|||||||.||||++||+++.+.... ...+++.++|++++++|++|..+....+.++..|+++++.
T Consensus 210 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 288 (570)
T 4gr5_A 210 GVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQ 288 (570)
T ss_dssp CCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSS
T ss_pred CCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCc
Confidence 457899999999999999999999999999765544 4456788999999999999877766677788899988874
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 234 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
++..+++.|+++++|++.++|+++..+.+...
T Consensus 289 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------------------------------------- 322 (570)
T 4gr5_A 289 NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---------------------------------------------- 322 (570)
T ss_dssp SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG----------------------------------------------
T ss_pred cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch----------------------------------------------
Confidence 56789999999999999999999988754210
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017 235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA 312 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~ 312 (520)
..+..+|.+++||++++... +++.+.+ +++++++||+||++++.+.
T Consensus 323 --------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~ 370 (570)
T 4gr5_A 323 --------------------------------EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTH 370 (570)
T ss_dssp --------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred --------------------------------hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeee
Confidence 12233489999999999765 6677766 8999999999999876654
Q ss_pred cCCC----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCC--------Cccc
Q 010017 313 RRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED--------GWLN 380 (520)
Q Consensus 313 ~~~~----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~--------gw~~ 380 (520)
.... .....++|+|+++++++|+| ++++++++|+.|||+|+||++++|||++|+.|+++|..+ |||+
T Consensus 371 ~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~ 449 (570)
T 4gr5_A 371 HAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR 449 (570)
T ss_dssp EECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEE
T ss_pred eeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEe
Confidence 3321 23346799999999999999 458999999999999999999999999999999998543 7999
Q ss_pred cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcC
Q 010017 381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD 456 (520)
Q Consensus 381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~ 456 (520)
|||+|++++ ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++ .+.|+|++.
T Consensus 450 TGDlg~~d~----------dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~ 518 (570)
T 4gr5_A 450 TGDLARRRA----------DGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAE 518 (570)
T ss_dssp EEEEEEECT----------TSCEEEEEC----------------------------------------------------
T ss_pred CCCeEEECC----------CCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEec
Confidence 999999999 8999999999999997 9999999999999999999999999998654 567888775
Q ss_pred hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 457 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
.+. ...+.++++++++++|+.|+. ++.|.++++.+...+||+
T Consensus 519 ~~~---------------~~~~~~~l~~~l~~~l~~~~~-----P~~i~~v~~lP~t~~GKi 560 (570)
T 4gr5_A 519 RAD---------------APPDAAELRRHVAEALPAYMV-----PVECVPVDELPRTPNGKL 560 (570)
T ss_dssp --------------------------------------------------------------
T ss_pred CCC---------------CCcCHHHHHHHHHhhCccccC-----CcEEEEcccCCCCCCcCc
Confidence 431 235678999999999999984 477889999999999987
No 22
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2e-54 Score=454.58 Aligned_cols=335 Identities=22% Similarity=0.239 Sum_probs=275.8
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 345789999999999999999999999999999888888889999999999999999999988778889999999874
Q ss_pred ----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017 157 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 232 (520)
Q Consensus 157 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
++..+++.++++++|++.++|+++..++.....
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------------- 255 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF------------------------------------------- 255 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC-------------------------------------------
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc-------------------------------------------
Confidence 467899999999999999999998776431000
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccce
Q 010017 233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI 310 (520)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~ 310 (520)
....+..+|.+++||+++++++ +++.+.+ ++++++.||+||++..+
T Consensus 256 --------------------------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 303 (512)
T 3fce_A 256 --------------------------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAV 303 (512)
T ss_dssp --------------------------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCS
T ss_pred --------------------------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhe
Confidence 0012334589999999999987 5666777 89999999999998766
Q ss_pred eccCCCC-----CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhccc---CCCCccccC
Q 010017 311 AARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTG 382 (520)
Q Consensus 311 ~~~~~~~-----~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f---~~~gw~~TG 382 (520)
+...... ....++|+|.++++++|+| ++++++++|+.|||+++||+++.|||++|+.|+++| +.+|||+||
T Consensus 304 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG 382 (512)
T 3fce_A 304 TGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG 382 (512)
T ss_dssp EEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred eeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence 5433221 2456899999999999999 568999999999999999999999999999999998 456799999
Q ss_pred ceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChH
Q 010017 383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKE 458 (520)
Q Consensus 383 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~ 458 (520)
|+|++ + ||+++|.||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.++ +.+.|+|+++.+
T Consensus 383 Dlg~~-~----------dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 450 (512)
T 3fce_A 383 DAGYV-E----------NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH 450 (512)
T ss_dssp EEEEE-E----------TTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred ceEEe-c----------CCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence 99998 6 7999999999999997 999999999999999999999999998754 357788888643
Q ss_pred HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 459 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
. ........++++++++++|+.|+ .++.|.++++.+...+||+
T Consensus 451 ~------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~~~~lP~t~~GKi 493 (512)
T 3fce_A 451 S------------FEKEFKLTSAIKKELNERLPNYM-----IPRKFMYQSSIPMTPNGKV 493 (512)
T ss_dssp C------------CSSHHHHHHHHHHHHHTTSCGGG-----SCSEEEECSCCCBCTTSSB
T ss_pred c------------ccchhhhHHHHHHHHHhhCchhc-----CCeEEEEecccCCCCCcCh
Confidence 0 00000113467777887888887 4578999999999999997
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.5e-54 Score=486.80 Aligned_cols=333 Identities=29% Similarity=0.466 Sum_probs=211.4
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh----hcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeE
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIEL 153 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~ 153 (520)
....++|+++|+|||||||.||||++||+++.+.+..... .+++.++|++++++|++|.+++.. .+.++..|+++
T Consensus 220 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 299 (979)
T 3tsy_A 220 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI 299 (979)
T ss_dssp SCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEE
T ss_pred CCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEE
Confidence 3567899999999999999999999999999887766543 456788999999999999999865 45678899998
Q ss_pred Eec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017 154 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 230 (520)
Q Consensus 154 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (520)
++. ++..+++.|+++++|++.++|+++..+.+.....
T Consensus 300 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------- 339 (979)
T 3tsy_A 300 LIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE---------------------------------------- 339 (979)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG----------------------------------------
T ss_pred EEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc----------------------------------------
Confidence 884 5788999999999999999999998775421100
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccc
Q 010017 231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP 308 (520)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~ 308 (520)
...+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++.
T Consensus 340 -----------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~ 384 (979)
T 3tsy_A 340 -----------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384 (979)
T ss_dssp -----------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCS
T ss_pred -----------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhH
Confidence 012334589999999999987 5555667 899999999999987
Q ss_pred ceeccC-----CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCc
Q 010017 309 VIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 383 (520)
Q Consensus 309 ~~~~~~-----~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGD 383 (520)
+++... +.....+++|+|+++++++|+|+++++++++|+.|||+|+||++++|||++|+.|++.|+.+|||+|||
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGD 464 (979)
T 3tsy_A 385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGD 464 (979)
T ss_dssp EEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEE
T ss_pred HHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCC
Confidence 665431 223456889999999999999988899999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHH
Q 010017 384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE 459 (520)
Q Consensus 384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~ 459 (520)
+|++++ ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|++.++
T Consensus 465 l~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~- 532 (979)
T 3tsy_A 465 IGLIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD- 532 (979)
T ss_dssp EEEECT----------TSCEEEEEESCC----------------------------------------------------
T ss_pred EEEEcC----------CceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC-
Confidence 999999 8999999999999997 9999999999999999999999999997654 46688887654
Q ss_pred HHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 460 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.++++++++++|+.|+ .+++|.++++.+...|||+
T Consensus 533 ---------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi 571 (979)
T 3tsy_A 533 ---------------SELSEDDVKQFVSKQVVFYK-----RINKVFFTESIPKAPSGKI 571 (979)
T ss_dssp -----------------------------------------------------------
T ss_pred ---------------CCCCHHHHHHHHHHhccccc-----CCeEEEEeCCcCcCCCCCe
Confidence 34567889999999999999 4567899999999999986
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.4e-53 Score=449.22 Aligned_cols=338 Identities=20% Similarity=0.218 Sum_probs=269.2
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh--cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT 156 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~--~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~ 156 (520)
....++|+++|+|||||||.||||++||+++.+........ ++..+++++++.+|++|.++....+.++..|+++++.
T Consensus 140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~ 219 (521)
T 3l8c_A 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFAL 219 (521)
T ss_dssp SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 34578999999999999999999999999998877666544 6778899999999999999887777788999998874
Q ss_pred ------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017 157 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 230 (520)
Q Consensus 157 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (520)
++..+++.+.++++|++.++|+++..+......
T Consensus 220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------- 258 (521)
T 3l8c_A 220 PKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF----------------------------------------- 258 (521)
T ss_dssp CGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC-----------------------------------------
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc-----------------------------------------
Confidence 567889999999999999999998766431000
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccc
Q 010017 231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP 308 (520)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~ 308 (520)
....+..+|.+++||++++.++ +++.+.+ ++++++.||+||++.
T Consensus 259 ----------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~ 304 (521)
T 3l8c_A 259 ----------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV 304 (521)
T ss_dssp ----------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred ----------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhh
Confidence 0012334589999999999887 6667777 899999999999987
Q ss_pred ceeccCCC-----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhccc---CCCCccc
Q 010017 309 VIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLN 380 (520)
Q Consensus 309 ~~~~~~~~-----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f---~~~gw~~ 380 (520)
.++..... ....+++|+|+|+++++|+| ++++++++|+.|||+++||+++.|||++|+.|+++| +.+|||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~ 383 (521)
T 3l8c_A 305 ALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYH 383 (521)
T ss_dssp CSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred hhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeee
Confidence 66543221 12346899999999999999 468999999999999999999999999999999998 5678999
Q ss_pred cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC-----ceeEEEEEc
Q 010017 381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-----RRPGAIIVP 455 (520)
Q Consensus 381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~-----~~~~a~vv~ 455 (520)
|||+|++++ ||+++|.||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.++ +.+.|+|++
T Consensus 384 TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~ 452 (521)
T 3l8c_A 384 TGDIGSLTE----------DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVV 452 (521)
T ss_dssp EEEEEEECS----------SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEE
T ss_pred CCCEEEEeC----------CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEe
Confidence 999999999 8999999999999997 899999999999999999999999998753 357789998
Q ss_pred ChHHHHHHHHHcCCCcCCc-cccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 456 DKEEVLMAAKRLSIVHADA-SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
.++.. .... .....++++++++++|+.|+ .++.|.++++.+...+||+
T Consensus 453 ~~~~~----------~~~~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKi 501 (521)
T 3l8c_A 453 KDGVK----------ERFDRELELTKAIKASVKDHMMSYM-----MPSKFLYRDSLPLTPNGKI 501 (521)
T ss_dssp CTTSG----------GGCSSHHHHHHHHHHHSGGGSCGGG-----SCSEEEECSSCCBCTTSSB
T ss_pred cCccc----------cccccchhhHHHHHHHHHhhCcccc-----CCeEEEEecccCCCCCcCc
Confidence 75410 0000 00124677888888888887 4478999999999999997
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.5e-53 Score=445.19 Aligned_cols=320 Identities=24% Similarity=0.319 Sum_probs=270.2
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
....++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 345789999999999999999999999999999988888889999999999999999999998888889999999884
Q ss_pred -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017 157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 235 (520)
Q Consensus 157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (520)
++..+++.|+++++|++.++|+++..+......
T Consensus 238 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------- 271 (501)
T 3ipl_A 238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------------------------- 271 (501)
T ss_dssp CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------------------
T ss_pred CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------------------
Confidence 688999999999999999999999887543100
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCC
Q 010017 236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP 315 (520)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~ 315 (520)
.. ..+|.+++||+++++++.+.+..+++++++.||+||++..++...+
T Consensus 272 -------------------------------~~-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 319 (501)
T 3ipl_A 272 -------------------------------EP-YNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATP 319 (501)
T ss_dssp -------------------------------SC-TTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECH
T ss_pred -------------------------------Cc-CcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCc
Confidence 00 0238899999999999866555679999999999999875554332
Q ss_pred C--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCC
Q 010017 316 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 393 (520)
Q Consensus 316 ~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~ 393 (520)
. ....+++|+|+++++++|+|++ +|+.|||+++|+++++|||++|+.|++ | .+|||+|||+|++++
T Consensus 320 ~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~---- 387 (501)
T 3ipl_A 320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDH---- 387 (501)
T ss_dssp HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECT----
T ss_pred cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcC----
Confidence 2 1345789999999999999964 467899999999999999999999988 6 589999999999998
Q ss_pred CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCC
Q 010017 394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI 469 (520)
Q Consensus 394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~ 469 (520)
||+++|+||+||+||. +|++|+|.|||++|.+||.|.+|+|++.+++ .+.+++++.
T Consensus 388 ------~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~------------- 447 (501)
T 3ipl_A 388 ------EGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE------------- 447 (501)
T ss_dssp ------TSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-------------
T ss_pred ------CCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC-------------
Confidence 8999999999999995 9999999999999999999999999998654 355777764
Q ss_pred CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
...+.++++++++++|+.|+. +++|.++++.+...|||+
T Consensus 448 -----~~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi 486 (501)
T 3ipl_A 448 -----SDISKAQLIAYLSKHLAKYKV-----PKHFEKVDTLPYTSTGKL 486 (501)
T ss_dssp -----SCCCHHHHHHHHHHHSCGGGS-----CSEEEECSSCC-------
T ss_pred -----CCCCHHHHHHHHHhhCccccC-----CCEEEEecccCCCCCCCE
Confidence 345788999999999999984 477999999999999997
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.7e-53 Score=455.59 Aligned_cols=322 Identities=18% Similarity=0.176 Sum_probs=265.6
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--- 156 (520)
...++|++||+|||||||.||||++||+++.+.+.. ...+++.++|++++++|++|.++....+.++..|+++++.
T Consensus 160 ~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 160 CFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 346899999999999999999999999999876654 4567888999999999999999988888889999998873
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 234 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (520)
++..+++.|+++++|++..+|+++..+....
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~----------------------------------------------- 271 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLD----------------------------------------------- 271 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-----------------------------------------------
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-----------------------------------------------
Confidence 5788999999999999999999998775410
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017 235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA 312 (520)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~ 312 (520)
...+..+|.+++||++++... +++.+.+ +++++|.||+||++..++.
T Consensus 272 -------------------------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 320 (620)
T 4dg8_A 272 -------------------------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC 320 (620)
T ss_dssp -------------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred -------------------------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence 012233489999999999664 6676665 8999999999999876654
Q ss_pred cCCC----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCC-------Ccccc
Q 010017 313 RRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-------GWLNT 381 (520)
Q Consensus 313 ~~~~----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~-------gw~~T 381 (520)
.... .....++|+|+++++++|+|+++..++|+|+.|||+|+||++++||||+|+.|+++|..+ +||+|
T Consensus 321 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrT 400 (620)
T 4dg8_A 321 HVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRT 400 (620)
T ss_dssp EECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEE
T ss_pred EeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeC
Confidence 3221 134568999999999999997655558999999999999999999999999999999653 79999
Q ss_pred CceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce---eEEEEEcChH
Q 010017 382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR---PGAIIVPDKE 458 (520)
Q Consensus 382 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~---~~a~vv~~~~ 458 (520)
||+|++++ ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++. +.++++...
T Consensus 401 GDl~~~~~----------dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~- 468 (620)
T 4dg8_A 401 GDRARYDE----------QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKA- 468 (620)
T ss_dssp EEEEEECT----------TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECT-
T ss_pred CCEEEECC----------CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecCh-
Confidence 99999999 8999999999999997 99999999999999999999999999986553 334444321
Q ss_pred HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 459 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
++++++++++|+.|+. ++.|.++++.+...|||+
T Consensus 469 ---------------------~~~~~~l~~~Lp~y~~-----P~~~~~v~~lP~t~~GKi 502 (620)
T 4dg8_A 469 ---------------------DASPQALLRQLPTWQR-----PHACVRVEALPLTAHGKL 502 (620)
T ss_dssp ---------------------TCCCHHHHHHSCGGGS-----CSEEEECSSCCCC----C
T ss_pred ---------------------HHHHHHHHHhChhhcC-----CcEEEEECcCCCCcccCH
Confidence 1234567788999984 478999999999999997
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.5e-51 Score=438.84 Aligned_cols=336 Identities=21% Similarity=0.320 Sum_probs=272.4
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 156 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~- 156 (520)
....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 162 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 162 TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 3567899999999999999999999999999999988888899999999999999999999887 66778899998874
Q ss_pred ------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017 157 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 230 (520)
Q Consensus 157 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (520)
++..+++.|+++++|++.++|.++..+.+.+.....
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------------------------------- 283 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-------------------------------------- 283 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG--------------------------------------
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc--------------------------------------
Confidence 467889999999999999999998877553211000
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh------CCeeeecccc
Q 010017 231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVGYGL 303 (520)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~------g~~v~~~YG~ 303 (520)
....+..+|.+++||+++++++ +++.+.+ +.++++.||+
T Consensus 284 ----------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~ 329 (590)
T 3kxw_A 284 ----------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGL 329 (590)
T ss_dssp ----------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEEC
T ss_pred ----------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccc
Confidence 0012334589999999999887 5666666 2469999999
Q ss_pred cccccceeccCCC---------------------------CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC
Q 010017 304 TESSPVIAARRPT---------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356 (520)
Q Consensus 304 TE~~~~~~~~~~~---------------------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp 356 (520)
||++..++...+. ....+++|+|+++ ++|+|+++++++++|+.|||+|+||
T Consensus 330 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~ 407 (590)
T 3kxw_A 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSN 407 (590)
T ss_dssp GGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEEST
T ss_pred ccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCC
Confidence 9998876653221 1234688999988 8889988899999999999999999
Q ss_pred CCCccccCCchhhhcccCC------CC--ccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHH
Q 010017 357 QVMQGYFKNPSATKQALDE------DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE 428 (520)
Q Consensus 357 ~v~~GY~~~~~~t~~~f~~------~g--w~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~ 428 (520)
++++|||++|+.|+++|.. +| ||+|||+|+++ ||.++|+||+||+||+ +|+||+|.|||+
T Consensus 408 ~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~ 475 (590)
T 3kxw_A 408 SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIII-YGKNHYPQDIEF 475 (590)
T ss_dssp TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----------TTEEEEEEESSCHHHH-HHHTTHHHHHHH
T ss_pred cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----------CCEEEEEcCccceEEE-CCEecCHHHHHH
Confidence 9999999999999999964 24 99999999988 4999999999999997 999999999999
Q ss_pred HH-hcCcccc--eEEEEeCCC---ceeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHH-HhccCCCcc
Q 010017 429 AA-LRSSLIR--QIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQI 501 (520)
Q Consensus 429 ~l-~~~p~V~--~~~Vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i 501 (520)
+| ..||.|. +|+|++.++ +.+.+++++..+. ....+.+++.+++++.|.. ++.+.
T Consensus 476 ~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~l~~~l~~~l~~~~~~p~---- 537 (590)
T 3kxw_A 476 SLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRF--------------MDDVAQDNLFNEIFELVYENHQLEV---- 537 (590)
T ss_dssp HHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTT--------------CCHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred HHHhcCccccCccEEEEEecCCCCceEEEEEEecccc--------------ccchhHHHHHHHHHHHHHHHcCCce----
Confidence 99 7899998 899998654 3566777765420 0234567899999999996 55431
Q ss_pred ccEEEe--cCCCCcCCCcc
Q 010017 502 GPIHVV--DEPFTVNFLCL 518 (520)
Q Consensus 502 ~~~~~~--~~~~~~~~g~l 518 (520)
..+.++ ++.+...+||+
T Consensus 538 ~~i~~v~~~~lP~t~sGKi 556 (590)
T 3kxw_A 538 HTIVLIPLKAMPHTTSGKI 556 (590)
T ss_dssp CEEEEEETTCSCCCSCHHH
T ss_pred eEEEEECCCccCcCCCcHH
Confidence 134555 68888899986
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.1e-50 Score=465.99 Aligned_cols=325 Identities=22% Similarity=0.273 Sum_probs=277.9
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--- 156 (520)
...++|++||+|||||||.||||++||+++.+. ......+++.++|+++++.|++|..+....+.++..|+++++.
T Consensus 603 ~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~ 681 (1304)
T 2vsq_A 603 AIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEH 681 (1304)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGG
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChh
Confidence 457899999999999999999999999999865 4445567888999999999999988887778889999999884
Q ss_pred ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017 157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 233 (520)
Q Consensus 157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (520)
++..+.+.|.++++|++..+|+++..+.....
T Consensus 682 ~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~--------------------------------------------- 716 (1304)
T 2vsq_A 682 TLLDTERLTDLILQENVNVMFATTALFNLLTDAGE--------------------------------------------- 716 (1304)
T ss_dssp GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---------------------------------------------
T ss_pred hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---------------------------------------------
Confidence 46789999999999999999999987754200
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC-Ceeeeccccccccccee
Q 010017 234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIA 311 (520)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~ 311 (520)
..+..+|.+++||++++... +++.+.++ ++++|+||+||++..++
T Consensus 717 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 763 (1304)
T 2vsq_A 717 ---------------------------------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFAT 763 (1304)
T ss_dssp ---------------------------------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSE
T ss_pred ---------------------------------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHhe
Confidence 00112388999999999775 67777764 78999999999987766
Q ss_pred ccCC----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccC------CCCcccc
Q 010017 312 ARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------EDGWLNT 381 (520)
Q Consensus 312 ~~~~----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~------~~gw~~T 381 (520)
.... ......++|+|++|++++|+|+ .++++|.|+.|||+|+|+++++||+|+|++|+++|. .++||||
T Consensus 764 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrT 842 (1304)
T 2vsq_A 764 AHVVHDLPDSISSLPIGKPISNASVYILNE-QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRT 842 (1304)
T ss_dssp EEECCCCCSSCSSCCCBEECTTEEEEEECT-TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEE
T ss_pred eeeccCccccCCCCCCceeeCCCEEEEECC-CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEec
Confidence 5432 1234468999999999999994 589999999999999999999999999999999984 2469999
Q ss_pred CceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcCh
Q 010017 382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDK 457 (520)
Q Consensus 382 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~ 457 (520)
||+|++++ ||.++|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.++ ..++|++++..
T Consensus 843 GDl~~~~~----------dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~ 911 (1304)
T 2vsq_A 843 GDLARWLP----------DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT 911 (1304)
T ss_dssp EEEEEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS
T ss_pred CCeEEEcC----------CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC
Confidence 99999999 8999999999999997 999999999999999999999999998653 46889998752
Q ss_pred HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 458 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
..+.+++++++++.|+.|+.| ..|.++++.+...|||+
T Consensus 912 ------------------~~~~~~l~~~l~~~Lp~ymvP-----~~~~~l~~lP~t~~GKi 949 (1304)
T 2vsq_A 912 ------------------QLSAEDVKAHLKKQLPAYMVP-----QTFTFLDELPLTTNGKV 949 (1304)
T ss_dssp ------------------SSCHHHHHHHHHHHSCGGGSC-----SEEEEESCCCCCSSCSS
T ss_pred ------------------CCCHHHHHHHHHHhChHhhhc-----cEEEEecccCCCCCccc
Confidence 356789999999999999955 77999999999999997
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3e-50 Score=429.31 Aligned_cols=332 Identities=20% Similarity=0.305 Sum_probs=267.2
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh-cCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-VPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 156 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~-~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~- 156 (520)
...++|+++|+|||||||.||||++||+++.+.+..+... +++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 172 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 172 RPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 4568999999999999999999999999999887776544 78899999999999999999876 45567888888763
Q ss_pred ------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017 157 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 230 (520)
Q Consensus 157 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (520)
++..+++.|+++++|+++++|+++..+........
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------------------------- 292 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD--------------------------------------- 292 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH---------------------------------------
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc---------------------------------------
Confidence 46788999999999999999999876644211100
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh------CCeeeecccc
Q 010017 231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVGYGL 303 (520)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~------g~~v~~~YG~ 303 (520)
.....+..+|.+++||++++.++ +++.+.+ ++++++.||+
T Consensus 293 ---------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 339 (576)
T 3gqw_A 293 ---------------------------------LAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGL 339 (576)
T ss_dssp ---------------------------------HTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEEC
T ss_pred ---------------------------------cccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCc
Confidence 00012344589999999999887 5666666 6789999999
Q ss_pred cccccceeccCCCCC----------------------------CccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec
Q 010017 304 TESSPVIAARRPTCN----------------------------VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355 (520)
Q Consensus 304 TE~~~~~~~~~~~~~----------------------------~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g 355 (520)
||++..++....... ...++|+|+|+++++|+| ++++++++|+.|||+++|
T Consensus 340 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g 418 (576)
T 3gqw_A 340 AENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERVVGHICISG 418 (576)
T ss_dssp GGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTBCEEEEEES
T ss_pred ccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCCeEEEEEeC
Confidence 999887765432110 123789999999999999 679999999999999999
Q ss_pred CCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcc
Q 010017 356 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 435 (520)
Q Consensus 356 p~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~ 435 (520)
|++++|||++|+.+++.+ .+|||+|||+|++ + ||+++|+||+||+||+ +|+||+|.|||++|.+||.
T Consensus 419 ~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~ 485 (576)
T 3gqw_A 419 PSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-L----------DGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPE 485 (576)
T ss_dssp TTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-E----------TTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSS
T ss_pred ccccccccCCcccccccc-CCCeeeccceEEE-E----------CCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcc
Confidence 999999999999888766 5899999999998 6 7999999999999997 9999999999999999999
Q ss_pred cceEEEEeC--CCceeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHH-HHHhccCCCccccEEEec--CC
Q 010017 436 IRQIVVIGQ--DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGEL-RKWTSKCSFQIGPIHVVD--EP 510 (520)
Q Consensus 436 V~~~~Vvg~--~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~i~~~~~~~--~~ 510 (520)
|.+++|++. +++...++++.... .....+++++.+++.| +.++.+ ..+.+++ +.
T Consensus 486 V~~~~vv~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~l~~~l~~~~~~p-----~~i~~v~~~~l 544 (576)
T 3gqw_A 486 IHSGDAIAFVTAQEKIILQIQCRIS----------------DEERRGQLIHALAARIQSEFGVT-----AAIDLLPPHSI 544 (576)
T ss_dssp CCTTSEEEEECTTSCEEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHSCC-----EEEEEECSSCS
T ss_pred cccccEEEEEcCCccEEEEEEEecC----------------chhHHHHHHHHHHHHHHHHhCCc-----eeEEEECCCCc
Confidence 998777765 44445555544321 1234567888899888 567644 5677777 78
Q ss_pred CCcCCCcc
Q 010017 511 FTVNFLCL 518 (520)
Q Consensus 511 ~~~~~g~l 518 (520)
+...+||+
T Consensus 545 P~t~~GKi 552 (576)
T 3gqw_A 545 PRTSSGKP 552 (576)
T ss_dssp CBCTTSSB
T ss_pred CcCCCccc
Confidence 88899986
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.7e-51 Score=432.71 Aligned_cols=339 Identities=17% Similarity=0.153 Sum_probs=196.4
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh--------cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCe
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--------VPAENGDKFLSMLPPWHVYERACGYFIFSRGI 151 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~--------~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~ 151 (520)
...++++++|+|||||||.||||++||+++.+....+... +.+...+++++.+|++|.++....+.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 3467899999999999999999999999998776654432 44678899999999999888877778888999
Q ss_pred eEEecc----hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccC
Q 010017 152 ELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 227 (520)
Q Consensus 152 ~~~~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (520)
++++.. +..+.+.++++++|++.++|+++..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----------------------------------------- 289 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----------------------------------------- 289 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------------------------------
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------------------------------
Confidence 988753 46778999999999999999977544110
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHH-HHHHhCCeeeeccccccc
Q 010017 228 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTES 306 (520)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~ 306 (520)
...+..+|.+++||+++++++.+ +.+.+++++++.||+||+
T Consensus 290 --------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~ 331 (562)
T 3ite_A 290 --------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEV 331 (562)
T ss_dssp --------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGG
T ss_pred --------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchh
Confidence 01223348999999999998854 445568999999999999
Q ss_pred ccceeccCC-CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCC--ccccCc
Q 010017 307 SPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGD 383 (520)
Q Consensus 307 ~~~~~~~~~-~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~g--w~~TGD 383 (520)
+..++.... .....+++|+|+++++++|+|+++++++++|+.|||+++||++++|||++|+.|+..+. +| ||+|||
T Consensus 332 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGD 410 (562)
T 3ite_A 332 TIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGD 410 (562)
T ss_dssp CSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEE
T ss_pred eeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccC-CCCEEEecCC
Confidence 876655432 23456789999999999999988899999999999999999999999999999987763 45 999999
Q ss_pred eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcC-cccceEEEEeCCCcee-----EEEEEcCh
Q 010017 384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQDQRRP-----GAIIVPDK 457 (520)
Q Consensus 384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~-p~V~~~~Vvg~~~~~~-----~a~vv~~~ 457 (520)
+|++++ ||+++|+||+||+||+ +|+||+|.|||++|.+| |.+.+++|++.+++.. .++++...
T Consensus 411 lg~~d~----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~ 479 (562)
T 3ite_A 411 IVRMDA----------DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG 479 (562)
T ss_dssp EEEECT----------TSCEEEEEEC------------------------------------------------------
T ss_pred EEEEcC----------CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccc
Confidence 999999 8999999999999996 99999999999999997 8889999998766532 23333322
Q ss_pred HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCc-CCCcc
Q 010017 458 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV-NFLCL 518 (520)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~-~~g~l 518 (520)
......... .........++++++++++|+.|+. ++.|.++++.+.. .+||+
T Consensus 480 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~L~~y~~-----P~~i~~v~~lP~t~~~GKi 532 (562)
T 3ite_A 480 AAVRGELRW----INENYKEINNSLRQACEQTLPAYMV-----PDFIIPISFIPLRDTSAKT 532 (562)
T ss_dssp --------------------------------------------------------------
T ss_pred ccccccccc----cccchhhHHHHHHHHHHhhCCcccC-----CcEEEEeccCCCCCCCCcc
Confidence 211100000 0011122356899999999999994 4778999999855 88986
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.3e-49 Score=395.88 Aligned_cols=299 Identities=14% Similarity=0.112 Sum_probs=247.8
Q ss_pred CCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-chhhH
Q 010017 83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-AVRNL 161 (520)
Q Consensus 83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-~~~~~ 161 (520)
.+|++||+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|++++...+.++..|+++++. .....
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~ 115 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP 115 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH
Confidence 47899999999999999999999999999999888899999999999999999999998888888888888774 33456
Q ss_pred HHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHH
Q 010017 162 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL 241 (520)
Q Consensus 162 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (520)
++.|+++++|++.++|+++..+++....
T Consensus 116 ~~~i~~~~~t~~~~~P~~l~~ll~~~~~---------------------------------------------------- 143 (358)
T 4gs5_A 116 LAGLDHADFDFVAMVPMQLQSILENSAT---------------------------------------------------- 143 (358)
T ss_dssp TTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------------
T ss_pred HHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------------
Confidence 7789999999999999999887542100
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCCCCcc
Q 010017 242 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG 321 (520)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 321 (520)
...+..+|.+++||+++++++.+.+..+|+++++.||+||++..++.........+
T Consensus 144 ------------------------~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g 199 (358)
T 4gs5_A 144 ------------------------SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEAS 199 (358)
T ss_dssp ------------------------GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCC
T ss_pred ------------------------cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccc
Confidence 01122348899999999999877777789999999999999988777766666678
Q ss_pred ccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCc
Q 010017 322 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 401 (520)
Q Consensus 322 ~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G 401 (520)
.+|.+.|++++.+. +.|||+++|+.. .+|||+|||+|++++ ||
T Consensus 200 ~~~~~~pgv~~~~~-----------~~Gel~~~g~~~----------------~~g~~~TGDlg~~d~----------~g 242 (358)
T 4gs5_A 200 ELYVFLPGIQYGVD-----------ERGCLHISGAVT----------------NGQTVQTNDLVEIHG----------NA 242 (358)
T ss_dssp SCEEECTTCEEEEC-----------TTSEEEEESGGG----------------TTCCEEEEEEEEECS----------SE
T ss_pred eeeccCCCeEEEec-----------CcCceEEecccc----------------cCcceecCCcccccc----------Cc
Confidence 89999999888763 358999987532 478999999999998 77
Q ss_pred EEEEEccccceEEeCCceeeccHHHHHHHh---cCcccceEEEE-eCCCc----eeEEEEEcChHHHHHHHHHcCCCcCC
Q 010017 402 VLVLEGRAKDTIVLSTGENVEPLELEEAAL---RSSLIRQIVVI-GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD 473 (520)
Q Consensus 402 ~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~---~~p~V~~~~Vv-g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~ 473 (520)
++|+||+||+||+ +|+||+|.|||++|. +||.|.+|+|+ +.+++ .+.|+|++...
T Consensus 243 -~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~--------------- 305 (358)
T 4gs5_A 243 -FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP--------------- 305 (358)
T ss_dssp -EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC---------------
T ss_pred -eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC---------------
Confidence 6677999999996 999999999998774 68999999887 45544 45677766532
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017 474 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 518 (520)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l 518 (520)
....++++++++++|+.|+ .+++|.++++.+...|||+
T Consensus 306 --~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 343 (358)
T 4gs5_A 306 --EALTERLTAEIRSRVSTYE-----NPKHIYFAKAFAKTQTDKI 343 (358)
T ss_dssp --HHHHHHHHHHHHHHSCGGG-----SCSCEEEESSCCBCTTSCB
T ss_pred --CcCHHHHHHHHHhhCCCCC-----CceEEEEECCcCCCCCCCh
Confidence 2345789999999999998 4578999999999999997
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.7e-47 Score=392.31 Aligned_cols=330 Identities=15% Similarity=0.101 Sum_probs=252.2
Q ss_pred CCCC-CCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh---hhcCCCCCcEEEEEcChhhHHHHH-HhhhhhhcCeeEE
Q 010017 80 TIGS-DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELM 154 (520)
Q Consensus 80 ~~~~-~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~d~~l~~lpl~h~~g~~-~~~~~~~~G~~~~ 154 (520)
..++ +|+++|+|||||||.||||++||+++.+....+. ..+++.++|++++++|+.|..+.. ..+.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 4456 8999999999999999999999999977665543 345889999999999987665554 4566788999988
Q ss_pred ec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017 155 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 231 (520)
Q Consensus 155 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (520)
+. ++..+++.|+++++|+++++|+++..+++........
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------------------- 202 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID-------------------------------------- 202 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC--------------------------------------
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC--------------------------------------
Confidence 74 5788999999999999999999999887653321100
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccc-
Q 010017 232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV- 309 (520)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~- 309 (520)
..+..+|.+++||+++++++ +.+.+.+|+++++.||+||+++.
T Consensus 203 -----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~ 247 (436)
T 3qov_A 203 -----------------------------------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPG 247 (436)
T ss_dssp -----------------------------------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEE
T ss_pred -----------------------------------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCe
Confidence 01233489999999999987 55566679999999999999544
Q ss_pred eeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017 310 IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389 (520)
Q Consensus 310 ~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~ 389 (520)
+..... .....|.+.++++++|+|+++++++++|+.|||+++|+ +++.| .++||+|||+|++++
T Consensus 248 ~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~ 311 (436)
T 3qov_A 248 VAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYRTRDLTRILP 311 (436)
T ss_dssp EEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEEEEEEECEEC
T ss_pred eEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEEcCCEEEEcC
Confidence 333221 12336778889999999988899999999999999973 34455 579999999999999
Q ss_pred CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHH
Q 010017 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAK 465 (520)
Q Consensus 390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~ 465 (520)
+.|.|++... ..++|+||.||+||+ +|++|+|.+||++|.+||.|.+++|++.++ +.+.++|+++ +.
T Consensus 312 ~gc~cG~~~~-~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~------ 382 (436)
T 3qov_A 312 GKCPCGRTHL-RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL------ 382 (436)
T ss_dssp SCCTTCCCSC-EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT------
T ss_pred CCCCCCCCcc-ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc------
Confidence 7775442110 125899999999997 899999999999999999999999998754 5788999987 41
Q ss_pred HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCcCCCcc
Q 010017 466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 518 (520)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~g~l 518 (520)
......+.+++++++++.|+.+.. ....|.+++ +.+... ||+
T Consensus 383 ------~~~~~~~~~~l~~~l~~~l~~~~~----~p~~i~~v~~~~lP~t~-GKi 426 (436)
T 3qov_A 383 ------STDNYIELEKIRRDIIRQLKDEIL----VTPKVKLVKKGSLPQSE-GKA 426 (436)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHS----SCCEEEEECTTCCC-------
T ss_pred ------cccchhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCcccCcC-Ccc
Confidence 000011257899999999999942 234788888 777777 886
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=4.4e-46 Score=383.98 Aligned_cols=323 Identities=18% Similarity=0.173 Sum_probs=253.7
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh---hhcCCCCCcEEEEEcCh-hhHHHHHHhhhhhhcCeeEEe
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY 155 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~d~~l~~lpl-~h~~g~~~~~~~~~~G~~~~~ 155 (520)
..+++|+++++|||||||.||||++||+++......+. ..+++.++|++++.+|+ +|..++...+.++..|++++.
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 45679999999999999999999999999877554433 35788999999999998 677777767778889999887
Q ss_pred c---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017 156 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 232 (520)
Q Consensus 156 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
. ++..+++.|+++++|+++++|+++..|++.......+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------------------------------------- 208 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD--------------------------------------- 208 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC---------------------------------------
Confidence 4 6788999999999999999999998887643221000
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccc-e
Q 010017 233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-I 310 (520)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~-~ 310 (520)
..+..+|.+++||+++++++ +.+.+.+|+++++.||+||+++. +
T Consensus 209 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~ 254 (443)
T 2y4o_A 209 ----------------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGV 254 (443)
T ss_dssp ----------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEE
T ss_pred ----------------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeE
Confidence 01223489999999999987 55556789999999999997433 3
Q ss_pred eccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017 311 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390 (520)
Q Consensus 311 ~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~ 390 (520)
+...... ....+.+.+++.++|+|+++++++++|+.|||+++| .|+++| .++||+|||+|++++
T Consensus 255 ~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~------------~t~~~~-p~~~y~TGDl~~~~~- 318 (443)
T 2y4o_A 255 ACECVET--KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTS------------LTKEAM-PVIRYRTRDLTALLP- 318 (443)
T ss_dssp EEECTTT--CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSCSSS-CCSSEEEEEEECEEC-
T ss_pred EeccCCC--CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeC------------CCcccC-hhheeecCCEEEEcC-
Confidence 3322211 112556778999999998889999999999999996 344556 479999999999998
Q ss_pred CCCCCccccC-cEE-----EEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC----CceeEEEEEcCh--H
Q 010017 391 HSRGRSRRCG-GVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPDK--E 458 (520)
Q Consensus 391 ~~~~~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~----~~~~~a~vv~~~--~ 458 (520)
+ |++ +|+||.||+||+ +|++|+|.+||++|.+||.|.+++|++.+ .+.+.++|++.+ +
T Consensus 319 ---------~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~ 388 (443)
T 2y4o_A 319 ---------PTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA 388 (443)
T ss_dssp ---------CSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHH
T ss_pred ---------CCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccc
Confidence 5 765 899999999997 89999999999999999999999988853 346778888875 2
Q ss_pred HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEe--cCCCCcCCCcc
Q 010017 459 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFLCL 518 (520)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~~~~g~l 518 (520)
. .....+.+++++++++.|+.+.. .+..|.++ ++.+...+||+
T Consensus 389 ~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~~GKi 433 (443)
T 2y4o_A 389 A-------------SVTDGERAALARELQHRIKTMVG----VSSGVTVLAAGGIPATATGKA 433 (443)
T ss_dssp T-------------TCCHHHHHHHHHHHHHHHHHHTC----CCCEEEEECTTCSCCCTTSCC
T ss_pred c-------------cchhhHHHHHHHHHHHHHHHHhC----CceEEEEeCCCcccCccCCcc
Confidence 0 00123457899999999998852 12457777 48888899986
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=5.7e-46 Score=382.46 Aligned_cols=323 Identities=20% Similarity=0.183 Sum_probs=252.7
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh---hhcCCCCCcEEEEEcCh-hhHHHHHHhhhhhhcCeeEEe
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY 155 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~d~~l~~lpl-~h~~g~~~~~~~~~~G~~~~~ 155 (520)
..+++|+++|+|||||||.||||++||+++......+. ..+++.++|++++.+|+ +|..++...+.++..|++++.
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 45679999999999999999999999999877654433 35788899999999998 788887777778889999886
Q ss_pred c---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017 156 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 232 (520)
Q Consensus 156 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (520)
. ++..+++.|++++||+++++|+++..+++.......+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------------------------------------- 206 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD--------------------------------------- 206 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC---------------------------------------
Confidence 4 5788999999999999999999999887643221000
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccc-e
Q 010017 233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-I 310 (520)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~-~ 310 (520)
..+..+|.+++||+++++++ +.+.+.+|+++++.||+||+++. +
T Consensus 207 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~ 252 (437)
T 2y27_A 207 ----------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGV 252 (437)
T ss_dssp ----------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEE
T ss_pred ----------------------------------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCee
Confidence 01123488999999999987 45556789999999999998433 3
Q ss_pred eccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017 311 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390 (520)
Q Consensus 311 ~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~ 390 (520)
+...... ....+.+.+++.++|+|+++++++|+|+.|||+++| .|+++| .++||+|||+|+++++
T Consensus 253 ~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~------------~t~~~~-~~~~y~TGDl~~~~~~ 317 (437)
T 2y27_A 253 ASECVET--KDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS------------LTKEAL-PIIRYRTRDLTRLLPG 317 (437)
T ss_dssp EECCTTT--CSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSCSSS-CCCSEEEEEEECEECC
T ss_pred EEecCCC--CCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec------------CCcCCc-hhheeecCCEEEEeCC
Confidence 3322211 112566778999999998889999999999999996 345566 4799999999999972
Q ss_pred CCCCCccccCcEE-----EEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC----CceeEEEEEcChHHHH
Q 010017 391 HSRGRSRRCGGVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPDKEEVL 461 (520)
Q Consensus 391 ~~~~~~~~~~G~l-----~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~----~~~~~a~vv~~~~~~~ 461 (520)
+|++ +|.||.||+||+ +|++|+|.+||++|.+||.|.+++|++.+ .+.+.++|+++++.
T Consensus 318 ---------~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~-- 385 (437)
T 2y27_A 318 ---------TARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET-- 385 (437)
T ss_dssp ---------SSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTT--
T ss_pred ---------CCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCc--
Confidence 3764 899999999997 99999999999999999999999988853 35688888887531
Q ss_pred HHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCcCCCcc
Q 010017 462 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 518 (520)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~g~l 518 (520)
.....+.+++++++++.|+.+.. ....|.+++ +.+... ||+
T Consensus 386 -----------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~-GKi 428 (437)
T 2y27_A 386 -----------APDTAAIQVAKQALAYDIKSLIG----VTAVINVLPVNGIERSV-GKA 428 (437)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCTTCSCCCS-SSC
T ss_pred -----------cchhhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCCccCCC-Ccc
Confidence 00113457899999999999862 124677774 666666 886
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.7e-42 Score=358.56 Aligned_cols=246 Identities=23% Similarity=0.317 Sum_probs=196.7
Q ss_pred CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCC------CcEEEEEcChhhHHHHHH-hhhhhhcCe
Q 010017 79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN------GDKFLSMLPPWHVYERAC-GYFIFSRGI 151 (520)
Q Consensus 79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~------~d~~l~~lpl~h~~g~~~-~~~~~~~G~ 151 (520)
....++|+++|+|||||||.||||++||+++.+++..+...++... +|++++++|++|.+++.. .+.++..|+
T Consensus 178 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 257 (480)
T 3t5a_A 178 KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY 257 (480)
T ss_dssp CCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred CCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence 3457899999999999999999999999999988888777777766 899999999999999765 567789999
Q ss_pred eEEec-------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCccc
Q 010017 152 ELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL 224 (520)
Q Consensus 152 ~~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (520)
++++. ++..+++.++++++| +..+|+++..++...... ..
T Consensus 258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~----~~---------------------------- 304 (480)
T 3t5a_A 258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD----DD---------------------------- 304 (480)
T ss_dssp CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT----GG----------------------------
T ss_pred ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc----cc----------------------------
Confidence 98874 567889999999999 889999887775431000 00
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC------Cee
Q 010017 225 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------VKV 297 (520)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g------~~v 297 (520)
.....+..+|.+++||+++++++ +++.+.++ +.+
T Consensus 305 ---------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~ 345 (480)
T 3t5a_A 305 ---------------------------------------MAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVI 345 (480)
T ss_dssp ---------------------------------------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGE
T ss_pred ---------------------------------------ccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhc
Confidence 00022344599999999999987 66666663 369
Q ss_pred eecccccccccceeccCCCC-------------------------CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEE
Q 010017 298 QVGYGLTESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 352 (520)
Q Consensus 298 ~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~ 352 (520)
++.||+||++..++...... ...+++|+|++ ++++|+|+++++++|+|++|||+
T Consensus 346 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~ 424 (480)
T 3t5a_A 346 RPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIW 424 (480)
T ss_dssp EEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEE
T ss_pred cccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEE
Confidence 99999999988776654321 23468999999 99999998889999999999999
Q ss_pred EecCCCCccccCCchhhhcccC-----------CCCccccCceeeeccCCCCCCccccCcEEEEEcc
Q 010017 353 VRGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 408 (520)
Q Consensus 353 v~gp~v~~GY~~~~~~t~~~f~-----------~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR 408 (520)
|+||++++|||++|++|+++|+ .+|||+|||+|+++ ||+|+|+||
T Consensus 425 v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----------dG~l~~~GR 480 (480)
T 3t5a_A 425 VHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480 (480)
T ss_dssp EESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----------TTEEEECC-
T ss_pred EeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----------CCEEEEeCC
Confidence 9999999999999999999995 56899999999985 699999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=5.1e-32 Score=272.11 Aligned_cols=244 Identities=18% Similarity=0.150 Sum_probs=172.9
Q ss_pred CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHh---hhhcCCCCCcEEEEEcCh-hhHHHHHHhhhhhhcCeeEEe
Q 010017 80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY 155 (520)
Q Consensus 80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~---~~~~~~~~~d~~l~~lpl-~h~~g~~~~~~~~~~G~~~~~ 155 (520)
..+++|+++|+|||||||.||||++||+++.+....+ ...+++.++|++++++|+ +|.+++...+.++..|+.++.
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3478999999999999999999999999998877743 345677899999999999 999999887777888884444
Q ss_pred c--chh-----------------------hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Q 010017 156 T--AVR-----------------------NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF 210 (520)
Q Consensus 156 ~--~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (520)
. ++. .+++.|+++++|++.++|+++..|++.....
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~-------------------- 226 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV-------------------- 226 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH--------------------
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh--------------------
Confidence 2 344 6777999999999999999998886531100
Q ss_pred HHHHHHHHhhCcccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHH
Q 010017 211 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 289 (520)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~ 289 (520)
...+..+|.+++||+++++++ +++
T Consensus 227 -------------------------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~ 251 (369)
T 3hgu_A 227 -------------------------------------------------------LQMKQSLAQITLGGTELNLDEIKFI 251 (369)
T ss_dssp -------------------------------------------------------HHHHHHCSEEEEESSCCCHHHHHHH
T ss_pred -------------------------------------------------------ccccCCeeEEEECCccCCHHHHHHH
Confidence 000111388999999999987 566
Q ss_pred H-HHh-CCeeeecccccccccceeccCCCCCCccccccC------cCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCcc
Q 010017 290 Y-EAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP------INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 361 (520)
Q Consensus 290 ~-~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~~------~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~G 361 (520)
. +.| ++++++.||+||+++++..++. .++|++ .|+++++|+|+++++++|+|+.|||+|++.
T Consensus 252 ~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l----- 321 (369)
T 3hgu_A 252 ASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHL----- 321 (369)
T ss_dssp HHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEE-----
T ss_pred HHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEc-----
Confidence 6 667 8999999999998866543221 148888 999999999987899999999999999953
Q ss_pred ccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCce
Q 010017 362 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 419 (520)
Q Consensus 362 Y~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~ 419 (520)
+++.+ --+|+|||++...+..+ +..+.....+..++|.++..++ .|.
T Consensus 322 -------~~~~~--l~ry~tgD~~~~~~~~~-g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 322 -------SPWAF--YPRVAERDTAIRLPGVS-GFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp -------ETTEE--EEEEEEEEEEEEECCST-TCSSCEEEEEEECC------------
T ss_pred -------Ccccc--cccccCCceEEEecCCC-CCcCcccccceeccccCCCcee-eec
Confidence 23333 12499999998765332 1111112345667888877775 564
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.05 E-value=5e-10 Score=90.55 Aligned_cols=93 Identities=13% Similarity=0.029 Sum_probs=63.3
Q ss_pred ccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHH
Q 010017 407 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 482 (520)
Q Consensus 407 GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (520)
.|.||||++ +|+||+|.|||++|.+||+|.++++++.+++ .+.++|+..+.. .......+++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~-------------~~~~~~~~~l 66 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF-------------TDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC-------------CCCHHHHHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc-------------ccccchhhhh
Confidence 489999997 9999999999999999999999999997543 455777765430 0011234567
Q ss_pred HHHHHHHHHHHhccCCCccccEEEec--CCCCcCCCcc
Q 010017 483 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 518 (520)
Q Consensus 483 ~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~g~l 518 (520)
.+.+++.+..+..- . .++.+++ +.+.. +||+
T Consensus 67 ~~~i~~~l~~~~gv---~-~~v~~v~~~~lPrt-sGKi 99 (109)
T 3lax_A 67 TREITRQLKDEILV---T-PRVKLVPKGALPKS-EGKA 99 (109)
T ss_dssp HHHHHHHHHHHHSS---C-CEEEEECTTCSCCC----C
T ss_pred HHHHHHHHHHHhCC---c-cceEEEcCCeecCC-CCCc
Confidence 77777777766522 1 2466765 45654 6886
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.02 E-value=7.7e-10 Score=89.33 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=65.8
Q ss_pred ccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHcCCCcCCccccChHHH
Q 010017 407 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 482 (520)
Q Consensus 407 GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (520)
||.||||++ +|+||+|.+||++|.+||+|.++++++.++ +.+.+++++ ++. ......+.+++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~------------~~~~~~~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL------------FTDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT------------CCCCHHHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc------------cccchhHHHHH
Confidence 899999997 999999999999999999999888887643 356677776 320 00001235678
Q ss_pred HHHHHHHHHHHhccCCCccccEEEec--CCCCcCCCccc
Q 010017 483 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA 519 (520)
Q Consensus 483 ~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~g~l~ 519 (520)
.+.+++.+...... .+ .+.+++ +.+.. +||+.
T Consensus 67 ~~~i~~~l~~~~~~---~~-~v~~v~~~~lPrt-sGKi~ 100 (109)
T 3gxs_A 67 TREITRQLKDEILV---TP-RVKLVPKGALPKS-EGKAV 100 (109)
T ss_dssp HHHHHHHHHHHHSS---CC-EEEEECTTCSCCC----CC
T ss_pred HHHHHHHHHHhhCC---ce-EEEEECCCCccCC-CCceE
Confidence 88888888754422 22 688887 67777 89863
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.95 E-value=1e-08 Score=106.07 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=88.0
Q ss_pred eeEEecCCCCChhHHHHHHHh-CCeee-ecccccccccceeccCCCCCCcccccc-CcCC-eEEEEEeCCCC--------
Q 010017 273 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN-------- 340 (520)
Q Consensus 273 r~~~~gg~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~ivd~~~~-------- 340 (520)
.+++.|| +.+-...+...+ +.+++ ..|++||+- +.....+.+. ++..+. .+|+ .-++.++.++.
T Consensus 308 ~~~~tG~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~-p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~ 383 (609)
T 4b2g_A 308 DVIVTGA--MAQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMSK-PSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS 383 (609)
T ss_dssp EEECSGG--GGGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTSC-GGGCCEEECTTSCEEEEEEGGGTTSCCCSSS
T ss_pred EEEccCC--hHHHHHHHHHHcCCCccccCccccccee-eeeecCCCCC-cccCceeecCCcEEEEEEeccccccccccCC
Confidence 3445555 333334444433 57776 899999963 3222222211 112221 2222 45566643321
Q ss_pred -------CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceE
Q 010017 341 -------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 413 (520)
Q Consensus 341 -------~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i 413 (520)
..++.|+.+||+++..+ |+|. |++||+.+++... +....+.|+||.||+|
T Consensus 384 ~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~------~~~p~i~~~gR~~~~l 440 (609)
T 4b2g_A 384 PPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFH------NSAPQFHFVRRKNVLL 440 (609)
T ss_dssp CCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEE------TTEEEEEEEEETTCCB
T ss_pred CCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecC------CCCcEEEEEEecCCeE
Confidence 34778999999998432 4432 9999999887310 0036899999999999
Q ss_pred EeCCceeeccHHHHHHHhc------Cc--ccceEEEEeC
Q 010017 414 VLSTGENVEPLELEEAALR------SS--LIRQIVVIGQ 444 (520)
Q Consensus 414 ~~~~G~~v~p~eIE~~l~~------~p--~V~~~~Vvg~ 444 (520)
++ .|++|++.+||++|.+ .. .|.|..++..
T Consensus 441 ~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d 478 (609)
T 4b2g_A 441 SI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFAD 478 (609)
T ss_dssp CS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEE
T ss_pred Ec-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecC
Confidence 96 8999999999999973 12 3556666543
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.92 E-value=4.3e-08 Score=101.35 Aligned_cols=132 Identities=14% Similarity=0.188 Sum_probs=82.3
Q ss_pred eeEEecCCCCChhHHHHHHHh-CCeee-ecccccccccceeccCCCCCCcccccc-CcCC-eEEEEEeCCCC--------
Q 010017 273 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN-------- 340 (520)
Q Consensus 273 r~~~~gg~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~ivd~~~~-------- 340 (520)
.+++.|| +.+-...+...+ +.+++ ..|++||+- +.....+.+ .++..+. .+|+ ..++.++.+..
T Consensus 303 ~~~~~G~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~-~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~l 378 (581)
T 4eql_A 303 ETVVTGS--MGQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPLC-KPEDVSYTFMPNMSYFEFIPMDGGDKNDVVDL 378 (581)
T ss_dssp EEECSGG--GGGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTTS-CGGGCCEEECTTSSEEEEEECSTTCCSSCEEG
T ss_pred EEEcCCC--hHHHHHHHHHHcCCCccccCccccccce-eeeccCCCC-CcccCceeecCCcEEEEEEeccccCCCcEeCH
Confidence 4555566 333334444434 67777 899999952 222222211 1112222 1222 45566653221
Q ss_pred CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCcee
Q 010017 341 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 420 (520)
Q Consensus 341 ~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~ 420 (520)
..+..|+.+||+++..+ |.| -|++||+.++..... ....+.|+||.||+|++ .|++
T Consensus 379 ~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~------~~p~i~f~gR~~~~l~~-~Gek 434 (581)
T 4eql_A 379 EDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYN------NAPQFKFVRRENVVLSI-DSDK 434 (581)
T ss_dssp GGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEET------TEEEEEEEEETTEEECS-SSCC
T ss_pred HHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCC------CCcEEEEEEecCCEEEe-eeeE
Confidence 24678999999998442 222 199999998874100 02679999999999996 8999
Q ss_pred eccHHHHHHHhc
Q 010017 421 VEPLELEEAALR 432 (520)
Q Consensus 421 v~p~eIE~~l~~ 432 (520)
+++.+||++|.+
T Consensus 435 l~~~~v~~al~~ 446 (581)
T 4eql_A 435 TNEEDLFKAVSQ 446 (581)
T ss_dssp EEHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999985
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.87 E-value=6.9e-08 Score=99.57 Aligned_cols=136 Identities=10% Similarity=0.057 Sum_probs=83.6
Q ss_pred ChhHHHHHHHh-CCeee-ecccccccccceeccCCCCCCcccccc-CcCC-eEEEEEeCCC----------CCcCCCCCc
Q 010017 283 PMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAET----------NEVLPAGSK 348 (520)
Q Consensus 283 ~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~ivd~~~----------~~~~~~g~~ 348 (520)
.+-...+...+ +.+++ ..|++||+- +.....+.+ .++..+. .+|+ ..++.+..+. ...++.|+.
T Consensus 316 ~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~-~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~ 393 (581)
T 4epl_A 316 EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANVTPRL-SPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEE 393 (581)
T ss_dssp GGGHHHHHHHHTTSCEEECCEEETTEE-EEECCCTTS-CTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCE
T ss_pred HHHHHHHHHHcCCCccccCceecccee-eeeecCCCC-CccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCe
Confidence 33334444444 57777 899999963 222221221 1111221 2232 3445553221 135788999
Q ss_pred cEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHH
Q 010017 349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE 428 (520)
Q Consensus 349 GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~ 428 (520)
+||+++..+ |.| -|++||+.++....+. ...+.|+||.++++++ .|+++++.+||+
T Consensus 394 YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~------~p~~~~~gR~~~~l~~-~Ge~~~~~~v~~ 449 (581)
T 4epl_A 394 YEVVITNYA---GLY--------------RYRLGDVVKVIGFYNN------TPQLKFICRRNLILSI-NIDKNTERDLQL 449 (581)
T ss_dssp EEEEEESTT---SCS--------------SEEEEEEEEEEEEETT------EEEEEEEEETTCCBCS-SSCCBCHHHHHH
T ss_pred EEEEEeecc---cee--------------eEEcCCEEEEecccCC------CcEEEEEeecCCeEEe-eeeECCHHHHHH
Confidence 999998442 222 1999999988752110 2578999999999996 899999999999
Q ss_pred HHhc------Cc--ccceEEEEeC
Q 010017 429 AALR------SS--LIRQIVVIGQ 444 (520)
Q Consensus 429 ~l~~------~p--~V~~~~Vvg~ 444 (520)
+|.+ .. .|.|..++..
T Consensus 450 al~~a~~~l~~~~~~l~eft~~~d 473 (581)
T 4epl_A 450 SVESAAKRLSEEKIEVIDFSSYID 473 (581)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred HHHHHHHhhcccCCeEEEEEEecC
Confidence 9974 12 3667766664
No 42
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=53.38 E-value=29 Score=24.97 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=31.3
Q ss_pred cHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHHHH
Q 010017 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA 463 (520)
Q Consensus 423 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~ 463 (520)
..++++.|.+.|.|.+|..+.-+.+.+.-+.+++.+++.++
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~~~ 55 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQF 55 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHH
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHHHH
Confidence 36899999999999999999767777776666665544333
No 43
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=48.95 E-value=31 Score=24.56 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=28.1
Q ss_pred HHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHH
Q 010017 424 LELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 459 (520)
Q Consensus 424 ~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~ 459 (520)
.++++.|.++|.|.+|..+.-+.+.+.-+.+++.++
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~ 51 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDK 51 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHH
T ss_pred HHHHHHHhCCCCeEEEEEEeccCCEEEEEEECCHHH
Confidence 689999999999999999876666666665665443
No 44
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=42.05 E-value=1.4e+02 Score=30.04 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=65.4
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
.|+.+|++... +| -.+|++.+...+..+.. ..++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 46778766432 22 34788888766555443 35889999999988854322 23345567788887764
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHHHH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETLYS 185 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 185 (520)
+.+.+...++..++..++..+.....+..
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 45778888999999999988776655543
No 45
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=40.52 E-value=2.1e+02 Score=28.78 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=66.3
Q ss_pred CCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017 83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 156 (520)
Q Consensus 83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--- 156 (520)
|+.+|++....+..+. ..-.+|++.+...+..+.. ..++.++|++..+++-..-+ ....+.++..|+..+..
T Consensus 33 p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~ 110 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPINPM 110 (549)
T ss_dssp TTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccCCC
Confidence 5777776553221111 1245788888766555443 35889999999988854322 23345667888888775
Q ss_pred -chhhHHHHHhhhCCcEEEecchHHHHHH
Q 010017 157 -AVRNLKDDLQRYQPHYMISVPLVYETLY 184 (520)
Q Consensus 157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 184 (520)
+.+.+...++..++..++..+.....+.
T Consensus 111 ~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 111 YKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 3577888899999999998887765553
No 46
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=38.87 E-value=50 Score=24.18 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=33.1
Q ss_pred cHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHHHHH
Q 010017 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAA 464 (520)
Q Consensus 423 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~ 464 (520)
..++++.+.++|.|.+|..+.-+.+.+.-+.+++.+++.++.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D~ll~v~~~d~~~l~~~l 56 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVV 56 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHC
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCEEEEEEECCHHHHHHHH
Confidence 478899999999999999998777777777777766554443
No 47
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=37.34 E-value=92 Score=31.51 Aligned_cols=82 Identities=9% Similarity=0.020 Sum_probs=58.3
Q ss_pred hhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----chhhHHHHHhhhCCcEEEe
Q 010017 103 MLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMIS 175 (520)
Q Consensus 103 ~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----~~~~~~~~i~~~~~t~~~~ 175 (520)
.+|++.+...+..+... .++.++|++..+++-..-+ ....+.++..|+..+.. +.+.+...++..++..++.
T Consensus 50 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 128 (550)
T 3rix_A 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 128 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEE
Confidence 57888887665554433 4889999999888843221 22345567788887764 4577888899999999999
Q ss_pred cchHHHHHHH
Q 010017 176 VPLVYETLYS 185 (520)
Q Consensus 176 ~P~~~~~l~~ 185 (520)
.......+..
T Consensus 129 ~~~~~~~~~~ 138 (550)
T 3rix_A 129 SKKGLQKILN 138 (550)
T ss_dssp CGGGHHHHHH
T ss_pred cHHHHHHHHH
Confidence 8877665543
No 48
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=36.66 E-value=1.6e+02 Score=29.27 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=64.4
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
.|+.+|++. . +-.+|++.+...+..+... .++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 19 ~pd~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV-D--------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE-C--------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 367777664 1 2458999887766555433 4788999999988854321 23345667888888874
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETL 183 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l 183 (520)
+.+.+...++..++..++..+.....+
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 117 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDIV 117 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhhH
Confidence 456788889999999999887766553
No 49
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=34.21 E-value=2e+02 Score=28.05 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=65.0
Q ss_pred CCCCEEEEEecC--CCCCCchhhhhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec
Q 010017 82 GSDDIATYVYTS--GTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT 156 (520)
Q Consensus 82 ~~~d~a~i~~TS--GTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~ 156 (520)
.|+.+|++.... +.+| ....+|.+.+...+..+... .+. ++|++..+++-..-+ ....+.++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 467788766542 2233 22568999887766655443 354 899999888743222 23345567788887764
Q ss_pred c-------hhhHHHHHhhhCCcEEEecchHHHHHH
Q 010017 157 A-------VRNLKDDLQRYQPHYMISVPLVYETLY 184 (520)
Q Consensus 157 ~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~ 184 (520)
+ .+.+...++..++..++..+.....+.
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 3 356788899999999998887665543
No 50
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.83 E-value=1.3e+02 Score=24.26 Aligned_cols=42 Identities=0% Similarity=-0.221 Sum_probs=31.4
Q ss_pred cHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHHHHH
Q 010017 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAA 464 (520)
Q Consensus 423 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~ 464 (520)
..++.+.+.++|.|.+|..+.-+.+.+.-+.+.+.+++.++.
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l~~~l 123 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVL 123 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhCCcCeEEEEEEecccCEEEEEEECCHHHHHHHH
Confidence 468899999999999999997666667666666655444443
No 51
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=27.15 E-value=3.4e+02 Score=27.35 Aligned_cols=89 Identities=10% Similarity=-0.020 Sum_probs=60.8
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
.|+.+|++. . +-.+|++.+...+..+.. ..++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 467777653 1 124788888765555443 35888999999888854221 23345667888888774
Q ss_pred --chhhHHHHHhhhCCcEEEecchHH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVY 180 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~ 180 (520)
+.+.+...++..++..++..+...
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~ 147 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLV 147 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchh
Confidence 356788889999999998876554
No 52
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=26.32 E-value=3.1e+02 Score=27.07 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=59.6
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
.|+.+|++... + +..+|++.+...+..+.. ..++.++|++...+|-..-+ ....+.++..|+..+..
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 35677766421 1 245899888766555443 35788999999888854322 23345567788887764
Q ss_pred --chhhHHHHHhhhCCcEEEe--cchHH
Q 010017 157 --AVRNLKDDLQRYQPHYMIS--VPLVY 180 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~--~P~~~ 180 (520)
+.+.+...++..++..++. .+...
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 114 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVA 114 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhh
Confidence 3567888889999998887 55443
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=25.93 E-value=3e+02 Score=27.75 Aligned_cols=96 Identities=9% Similarity=0.045 Sum_probs=63.3
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecch
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV 158 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~~ 158 (520)
.|+.+|++....+ .+-.+|++.+...+..+.. ..++.++|++..++|-..-+ ....+.++..|+..+..++
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecC
Confidence 4677887654411 1235888888766555443 35888999999988854322 2334566788888776432
Q ss_pred -------hhHHHHHhhhCCcEEEecchHHHHH
Q 010017 159 -------RNLKDDLQRYQPHYMISVPLVYETL 183 (520)
Q Consensus 159 -------~~~~~~i~~~~~t~~~~~P~~~~~l 183 (520)
+.+...++..++..++..+.....+
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 129 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 4566778889999988877655544
No 54
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=25.10 E-value=3e+02 Score=27.48 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=63.2
Q ss_pred CCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017 83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 156 (520)
Q Consensus 83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--- 156 (520)
|+.+|++....+ .+-.+|++.+...+..+.. ..++.++|++...++-..-+ ....+.++..|+..+..
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 105 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANPR 105 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCcc
Confidence 566666543211 1235788888765554443 45889999999888843221 22345567788888775
Q ss_pred -chhhHHHHHhhhCCcEEEecchHHHHH
Q 010017 157 -AVRNLKDDLQRYQPHYMISVPLVYETL 183 (520)
Q Consensus 157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l 183 (520)
+.+.+...++..++..++..+.....+
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 106 LSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 357788889999999999887765443
No 55
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=24.05 E-value=3.3e+02 Score=27.63 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=63.0
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh---hhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
.|+.+|++..... | ....+|.+.+...+..+. ...++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 5788887765321 2 134578888866555444 345889999999998854322 22345567788887764
Q ss_pred --chhhHHHHHhhhCCcEEEecch
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPL 178 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~ 178 (520)
+.+.+...++..++..++..+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 4677888899999998887654
No 56
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=22.54 E-value=3e+02 Score=27.36 Aligned_cols=92 Identities=9% Similarity=-0.017 Sum_probs=63.1
Q ss_pred CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017 82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 156 (520)
Q Consensus 82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-- 156 (520)
.|+.+|++.. | -.+|++.+...+..+.. ..++.++|++...++-..-+ ....+.++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4566776532 2 34788888766555443 35788999999888854322 22345667788887764
Q ss_pred --chhhHHHHHhhhCCcEEEecchHHHHH
Q 010017 157 --AVRNLKDDLQRYQPHYMISVPLVYETL 183 (520)
Q Consensus 157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l 183 (520)
+...+...++..++..++..+.....+
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 457788889999999999887766544
No 57
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.31 E-value=1.8e+02 Score=23.24 Aligned_cols=35 Identities=3% Similarity=-0.108 Sum_probs=26.9
Q ss_pred HHHHHHHhcCcccceEEEEeCCCceeEEEEE-cChH
Q 010017 424 LELEEAALRSSLIRQIVVIGQDQRRPGAIIV-PDKE 458 (520)
Q Consensus 424 ~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv-~~~~ 458 (520)
.++++.+.++|.|.+|..+.-+.+.+.-+.+ ++.+
T Consensus 83 ~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~~d~~ 118 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGVGRYNIIVRLLLPKDIK 118 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEESSCSEEEEEEEESSHH
T ss_pred HHHHHHHHcCCCeEEEeEecCCCCEEEEEEEcCCHH
Confidence 4888999999999999998766666666656 5443
No 58
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=22.21 E-value=2.1e+02 Score=22.70 Aligned_cols=36 Identities=11% Similarity=-0.177 Sum_probs=26.7
Q ss_pred cHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChH
Q 010017 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 458 (520)
Q Consensus 423 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~ 458 (520)
..++++.+.++|.|.+|..+.-+.+.+.-+.+.+.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~ 113 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLE 113 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHH
T ss_pred HHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHH
Confidence 457888999999999999876555666655555544
No 59
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.22 E-value=1.4e+02 Score=24.43 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=26.4
Q ss_pred cHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChH
Q 010017 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 458 (520)
Q Consensus 423 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~ 458 (520)
..++.+.|.++|.|.+|..+.-+.+.+.-+.+++.+
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG~~D~~l~v~~~d~~ 114 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVPDIA 114 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESSHH
T ss_pred HHHHHHHHhcCCCEEEeeecCCCCCEEEEEEECCHH
Confidence 457888999999999999886555666555555443
No 60
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=20.71 E-value=4e+02 Score=26.67 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=56.4
Q ss_pred hhhchHHHHHHHHHhhh---hcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecc-----------hhhHHHHHhh
Q 010017 102 VMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-----------VRNLKDDLQR 167 (520)
Q Consensus 102 v~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~-----------~~~~~~~i~~ 167 (520)
-.+|++.+...+..+.. ..++.++|++..++|-..-+ ....+.++..|+..+..+ ...+...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 35788888766555443 35788999999988854322 233456678888877643 4667788899
Q ss_pred hCCcEEEecchHHHHH
Q 010017 168 YQPHYMISVPLVYETL 183 (520)
Q Consensus 168 ~~~t~~~~~P~~~~~l 183 (520)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999999887665444
No 61
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=20.58 E-value=2.2e+02 Score=23.15 Aligned_cols=40 Identities=3% Similarity=-0.057 Sum_probs=28.9
Q ss_pred cHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHHH
Q 010017 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLM 462 (520)
Q Consensus 423 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~ 462 (520)
..++++.+.++|.|.+|..+.-+.+.+.-+.+.+.+++.+
T Consensus 85 ~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l~~ 124 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSH 124 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHH
T ss_pred HHHHHHHHhcChhhhEeeeecCCCCEEEEEEECCHHHHHH
Confidence 5678889999999999998865666666665665544333
No 62
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=20.30 E-value=2.8e+02 Score=27.87 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=57.1
Q ss_pred hhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----chhhHHHHHhhhCCcEEEe
Q 010017 103 MLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMIS 175 (520)
Q Consensus 103 ~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----~~~~~~~~i~~~~~t~~~~ 175 (520)
.+|++.+...+..+... .++.++|++..+++-..-+ ....+.++..|+..+.. +.+.+...++..++..++.
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 130 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEF-FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence 47888887665554433 5889999999888743221 22345567788887764 4677888999999999999
Q ss_pred cchHHHHHH
Q 010017 176 VPLVYETLY 184 (520)
Q Consensus 176 ~P~~~~~l~ 184 (520)
.+.....+.
T Consensus 131 ~~~~~~~~~ 139 (548)
T 2d1s_A 131 SKKGLDKVI 139 (548)
T ss_dssp CTTTHHHHH
T ss_pred cHHHHHHHH
Confidence 887665543
Done!