Query 010019
Match_columns 520
No_of_seqs 302 out of 1681
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 20:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4199 Uncharacterized conser 100.0 2.1E-82 4.5E-87 612.2 42.7 447 60-520 1-449 (461)
2 COG5064 SRP1 Karyopherin (impo 100.0 2.5E-40 5.4E-45 320.6 28.0 359 124-512 73-440 (526)
3 KOG0166 Karyopherin (importin) 100.0 6.5E-39 1.4E-43 333.0 33.9 342 124-496 68-416 (514)
4 PLN03200 cellulose synthase-in 100.0 7E-31 1.5E-35 307.9 39.8 357 147-517 165-561 (2102)
5 PLN03200 cellulose synthase-in 100.0 1.8E-30 3.9E-35 304.5 40.5 342 141-499 416-792 (2102)
6 KOG4224 Armadillo repeat prote 100.0 1.7E-28 3.6E-33 240.3 19.2 350 141-518 97-449 (550)
7 KOG0166 Karyopherin (importin) 100.0 1.1E-26 2.3E-31 242.0 32.0 361 123-513 110-484 (514)
8 KOG4224 Armadillo repeat prote 100.0 9.5E-27 2.1E-31 228.1 21.0 320 174-518 86-408 (550)
9 COG5064 SRP1 Karyopherin (impo 99.9 8.8E-26 1.9E-30 219.6 20.3 317 174-514 72-397 (526)
10 KOG4199 Uncharacterized conser 99.9 4.5E-23 9.8E-28 200.7 31.7 320 141-484 119-453 (461)
11 PF05804 KAP: Kinesin-associat 99.9 1.6E-19 3.5E-24 197.9 39.8 343 147-512 267-646 (708)
12 PF05804 KAP: Kinesin-associat 99.8 4.8E-18 1E-22 186.4 36.2 305 176-504 253-593 (708)
13 KOG2122 Beta-catenin-binding p 99.7 1.5E-16 3.3E-21 177.0 24.1 365 122-514 197-600 (2195)
14 KOG4500 Rho/Rac GTPase guanine 99.7 1.5E-15 3.2E-20 152.7 28.1 368 121-512 86-516 (604)
15 KOG1048 Neural adherens juncti 99.7 3.8E-15 8.3E-20 160.4 27.0 344 124-498 235-665 (717)
16 KOG2122 Beta-catenin-binding p 99.7 5.7E-16 1.2E-20 172.4 20.1 323 141-475 250-602 (2195)
17 KOG1048 Neural adherens juncti 99.7 4.4E-15 9.5E-20 160.0 26.4 352 124-492 277-701 (717)
18 KOG4500 Rho/Rac GTPase guanine 99.6 7.9E-14 1.7E-18 140.3 23.1 324 166-505 80-421 (604)
19 PF04826 Arm_2: Armadillo-like 99.5 1.3E-11 2.8E-16 121.3 22.2 198 212-430 7-205 (254)
20 cd00020 ARM Armadillo/beta-cat 99.4 2.1E-11 4.6E-16 105.2 15.2 117 349-473 2-119 (120)
21 PF04826 Arm_2: Armadillo-like 99.3 1.4E-10 3E-15 114.0 20.5 197 257-474 8-205 (254)
22 cd00020 ARM Armadillo/beta-cat 99.3 1.5E-10 3.3E-15 99.8 14.9 116 307-429 2-119 (120)
23 PF10508 Proteasom_PSMB: Prote 99.3 1.6E-08 3.5E-13 109.6 33.1 340 122-492 77-438 (503)
24 cd00256 VATPase_H VATPase_H, r 99.2 7.4E-09 1.6E-13 108.3 27.4 320 173-512 53-419 (429)
25 PF03224 V-ATPase_H_N: V-ATPas 99.2 8.8E-10 1.9E-14 112.5 18.3 230 174-420 56-304 (312)
26 PF10508 Proteasom_PSMB: Prote 99.1 1.7E-07 3.6E-12 101.8 33.5 348 141-514 50-419 (503)
27 PF03224 V-ATPase_H_N: V-ATPas 99.1 8.1E-09 1.8E-13 105.4 21.7 242 211-463 46-303 (312)
28 KOG1222 Kinesin associated pro 99.1 7.5E-08 1.6E-12 98.9 27.8 321 148-500 282-603 (791)
29 KOG0168 Putative ubiquitin fus 98.9 2.8E-07 6.1E-12 100.2 21.9 260 221-500 171-439 (1051)
30 cd00256 VATPase_H VATPase_H, r 98.9 2.5E-06 5.4E-11 89.5 27.9 307 142-474 67-425 (429)
31 KOG1222 Kinesin associated pro 98.8 3.8E-06 8.1E-11 86.6 27.1 328 141-484 316-673 (791)
32 PRK09687 putative lyase; Provi 98.8 1.3E-06 2.9E-11 87.5 23.2 254 124-470 25-278 (280)
33 KOG0168 Putative ubiquitin fus 98.8 1.1E-06 2.5E-11 95.6 21.9 263 123-412 168-439 (1051)
34 KOG1293 Proteins containing ar 98.7 4.5E-06 9.7E-11 89.2 25.0 141 372-516 391-534 (678)
35 KOG2759 Vacuolar H+-ATPase V1 98.7 1.3E-05 2.8E-10 81.9 26.9 318 174-513 66-436 (442)
36 KOG0946 ER-Golgi vesicle-tethe 98.7 9.9E-05 2.1E-09 80.4 34.0 342 118-485 18-410 (970)
37 PRK09687 putative lyase; Provi 98.7 5.1E-06 1.1E-10 83.4 23.2 251 174-510 24-277 (280)
38 PRK13800 putative oxidoreducta 98.7 1.7E-05 3.6E-10 92.2 29.9 244 173-512 652-896 (897)
39 KOG2160 Armadillo/beta-catenin 98.5 1.5E-05 3.2E-10 80.4 19.7 163 326-493 96-259 (342)
40 KOG2160 Armadillo/beta-catenin 98.5 2.9E-05 6.2E-10 78.3 21.5 184 189-386 96-281 (342)
41 KOG0946 ER-Golgi vesicle-tethe 98.5 0.00015 3.2E-09 79.1 27.4 282 189-486 39-358 (970)
42 PRK13800 putative oxidoreducta 98.4 6.1E-05 1.3E-09 87.6 26.3 246 171-513 619-865 (897)
43 KOG1293 Proteins containing ar 98.4 6.5E-05 1.4E-09 80.5 24.0 153 326-486 390-545 (678)
44 PF01602 Adaptin_N: Adaptin N 98.3 0.00081 1.8E-08 73.4 31.3 370 73-505 9-414 (526)
45 KOG4646 Uncharacterized conser 98.3 5.1E-06 1.1E-10 72.3 10.7 148 361-513 20-168 (173)
46 KOG4646 Uncharacterized conser 98.3 3.7E-06 8E-11 73.1 9.7 148 310-473 14-161 (173)
47 KOG3678 SARM protein (with ste 98.3 3.5E-05 7.6E-10 79.4 18.4 172 253-443 172-348 (832)
48 PF01602 Adaptin_N: Adaptin N 98.3 0.00018 4E-09 78.5 24.1 297 123-482 115-414 (526)
49 PF00514 Arm: Armadillo/beta-c 98.2 1.3E-06 2.8E-11 60.9 3.7 40 388-429 1-40 (41)
50 KOG2734 Uncharacterized conser 98.2 0.00083 1.8E-08 69.2 24.5 250 210-473 118-399 (536)
51 PF00514 Arm: Armadillo/beta-c 98.2 4.5E-06 9.7E-11 58.2 5.5 40 432-473 1-40 (41)
52 KOG1789 Endocytosis protein RM 98.1 0.0028 6E-08 71.2 28.8 428 55-499 1594-2142(2235)
53 KOG2023 Nuclear transport rece 98.1 0.00018 4E-09 77.1 18.7 309 121-473 127-504 (885)
54 PF09759 Atx10homo_assoc: Spin 98.1 1.3E-05 2.9E-10 67.2 7.8 87 418-517 3-89 (102)
55 KOG2759 Vacuolar H+-ATPase V1 98.1 0.0041 9E-08 64.0 26.8 306 143-474 80-438 (442)
56 KOG2171 Karyopherin (importin) 98.0 0.0032 7E-08 71.8 27.3 340 122-499 118-487 (1075)
57 KOG1241 Karyopherin (importin) 97.9 0.0034 7.3E-08 68.7 23.8 304 147-473 148-476 (859)
58 KOG2734 Uncharacterized conser 97.9 0.0065 1.4E-07 62.8 24.2 264 147-430 102-400 (536)
59 PF09759 Atx10homo_assoc: Spin 97.8 0.00011 2.4E-09 61.6 8.0 67 375-441 3-70 (102)
60 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0045 9.7E-08 64.6 20.9 255 153-429 7-268 (371)
61 KOG3678 SARM protein (with ste 97.7 0.00063 1.4E-08 70.4 14.1 182 308-499 176-360 (832)
62 COG5215 KAP95 Karyopherin (imp 97.7 0.022 4.8E-07 60.7 24.5 308 143-475 148-480 (858)
63 PF05536 Neurochondrin: Neuroc 97.6 0.0033 7.1E-08 68.9 19.1 196 263-476 7-215 (543)
64 smart00185 ARM Armadillo/beta- 97.6 0.00012 2.6E-09 50.4 5.1 39 389-429 2-40 (41)
65 PF10165 Ric8: Guanine nucleot 97.6 0.012 2.7E-07 63.0 22.9 241 230-486 43-346 (446)
66 PTZ00429 beta-adaptin; Provisi 97.6 0.15 3.3E-06 57.8 31.7 295 124-478 34-330 (746)
67 KOG2171 Karyopherin (importin) 97.6 0.16 3.5E-06 58.5 31.2 155 313-474 345-504 (1075)
68 PTZ00429 beta-adaptin; Provisi 97.6 0.14 3.1E-06 58.1 31.0 287 143-475 100-398 (746)
69 PF10165 Ric8: Guanine nucleot 97.5 0.0061 1.3E-07 65.3 19.1 268 150-434 2-341 (446)
70 smart00185 ARM Armadillo/beta- 97.5 0.00024 5.1E-09 48.9 5.2 39 433-473 2-40 (41)
71 KOG1241 Karyopherin (importin) 97.5 0.035 7.5E-07 61.1 23.4 300 172-500 318-651 (859)
72 KOG2023 Nuclear transport rece 97.5 0.0044 9.5E-08 66.9 16.4 303 173-513 128-503 (885)
73 PF05536 Neurochondrin: Neuroc 97.4 0.014 3E-07 64.1 20.4 194 220-432 8-215 (543)
74 PRK14707 hypothetical protein; 97.4 0.084 1.8E-06 63.9 27.1 296 189-506 555-857 (2710)
75 PF11841 DUF3361: Domain of un 97.4 0.0094 2E-07 54.1 15.0 138 346-485 3-143 (160)
76 KOG1789 Endocytosis protein RM 97.4 0.087 1.9E-06 59.9 25.0 300 193-511 1742-2112(2235)
77 KOG2973 Uncharacterized conser 97.3 0.12 2.5E-06 51.6 22.4 277 177-475 7-315 (353)
78 TIGR02270 conserved hypothetic 97.2 0.049 1.1E-06 57.6 20.9 209 175-474 88-296 (410)
79 PRK14707 hypothetical protein; 97.2 0.16 3.4E-06 61.7 26.3 277 215-513 245-528 (2710)
80 PF11841 DUF3361: Domain of un 97.0 0.017 3.7E-07 52.5 13.3 129 305-437 4-138 (160)
81 KOG3665 ZYG-1-like serine/thre 97.0 0.092 2E-06 59.3 21.5 167 336-508 494-687 (699)
82 KOG2973 Uncharacterized conser 96.9 0.31 6.6E-06 48.7 21.8 254 221-498 7-296 (353)
83 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.2 4.4E-06 57.0 22.4 248 215-472 115-404 (802)
84 PF13646 HEAT_2: HEAT repeats; 96.8 0.0058 1.2E-07 49.5 7.8 88 314-426 1-88 (88)
85 KOG4413 26S proteasome regulat 96.7 0.72 1.6E-05 46.5 22.8 246 164-430 119-377 (524)
86 KOG4413 26S proteasome regulat 96.6 0.47 1E-05 47.8 20.1 263 233-514 96-376 (524)
87 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0052 1.1E-07 45.4 5.2 55 415-472 1-55 (55)
88 COG5369 Uncharacterized conser 96.5 0.037 7.9E-07 58.7 13.0 247 253-515 423-741 (743)
89 PF13646 HEAT_2: HEAT repeats; 96.5 0.0074 1.6E-07 48.8 6.5 88 356-470 1-88 (88)
90 COG5369 Uncharacterized conser 96.5 0.0094 2E-07 63.0 8.5 168 214-396 428-603 (743)
91 TIGR02270 conserved hypothetic 96.5 0.4 8.7E-06 50.8 20.5 151 218-428 55-205 (410)
92 KOG4151 Myosin assembly protei 96.4 0.083 1.8E-06 58.6 15.5 227 250-498 493-723 (748)
93 PF14664 RICTOR_N: Rapamycin-i 96.4 0.076 1.6E-06 55.5 14.5 148 327-485 39-186 (371)
94 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0057 1.2E-07 45.2 4.6 54 373-428 2-55 (55)
95 PF13764 E3_UbLigase_R4: E3 ub 96.0 0.39 8.4E-06 54.8 18.4 195 305-502 110-335 (802)
96 KOG0213 Splicing factor 3b, su 95.8 4.1 8.9E-05 45.4 24.7 250 188-475 811-1066(1172)
97 KOG2999 Regulator of Rac1, req 95.8 0.38 8.3E-06 51.4 16.1 168 315-485 86-254 (713)
98 KOG2274 Predicted importin 9 [ 95.7 1.8 3.8E-05 49.1 21.5 271 189-479 543-844 (1005)
99 COG5231 VMA13 Vacuolar H+-ATPa 95.7 1.3 2.8E-05 44.6 18.3 218 281-512 169-425 (432)
100 KOG1517 Guanine nucleotide bin 95.7 0.79 1.7E-05 52.6 18.8 209 258-484 509-742 (1387)
101 KOG0213 Splicing factor 3b, su 95.6 3.9 8.5E-05 45.6 23.0 229 178-452 846-1080(1172)
102 KOG1059 Vesicle coat complex A 95.4 1.8 3.8E-05 48.0 19.8 214 220-473 147-364 (877)
103 KOG1062 Vesicle coat complex A 95.4 1.5 3.3E-05 49.0 19.4 226 231-485 306-591 (866)
104 PF08045 CDC14: Cell division 95.4 0.18 4E-06 49.5 11.3 99 373-472 106-205 (257)
105 KOG1517 Guanine nucleotide bin 95.3 1.2 2.6E-05 51.2 18.5 168 162-342 501-671 (1387)
106 COG5181 HSH155 U2 snRNP splice 95.3 3.2 7E-05 45.3 20.8 208 188-433 658-873 (975)
107 PF06371 Drf_GBD: Diaphanous G 95.2 0.21 4.6E-06 46.5 10.8 113 314-430 68-187 (187)
108 PF08045 CDC14: Cell division 95.2 0.34 7.3E-06 47.7 12.4 102 142-247 104-206 (257)
109 PF12348 CLASP_N: CLASP N term 94.8 0.15 3.4E-06 49.1 9.1 188 231-439 19-215 (228)
110 KOG1242 Protein containing ada 94.8 7.8 0.00017 42.3 24.5 258 219-510 136-439 (569)
111 KOG1059 Vesicle coat complex A 94.6 8.1 0.00018 43.1 21.9 222 177-440 148-373 (877)
112 PF12348 CLASP_N: CLASP N term 94.6 0.38 8.2E-06 46.4 11.1 158 313-484 54-216 (228)
113 KOG1077 Vesicle coat complex A 94.4 10 0.00022 42.2 24.1 299 123-473 112-432 (938)
114 PF04078 Rcd1: Cell differenti 94.4 3.7 8E-05 40.4 17.2 206 143-352 9-228 (262)
115 COG1413 FOG: HEAT repeat [Ener 94.1 3.8 8.2E-05 41.9 18.1 189 218-472 44-240 (335)
116 KOG4151 Myosin assembly protei 94.0 4 8.6E-05 45.8 18.6 290 73-406 417-719 (748)
117 PF06025 DUF913: Domain of Unk 93.9 0.95 2.1E-05 47.5 13.0 85 142-228 122-207 (379)
118 KOG0212 Uncharacterized conser 93.8 3.6 7.7E-05 44.5 17.0 217 189-430 221-444 (675)
119 PF07814 WAPL: Wings apart-lik 93.8 3.2 7E-05 43.2 16.9 135 345-479 197-360 (361)
120 KOG3036 Protein involved in ce 93.7 2.3 5E-05 41.4 14.0 151 237-397 97-257 (293)
121 KOG2274 Predicted importin 9 [ 93.6 8.9 0.00019 43.8 20.3 238 229-489 460-704 (1005)
122 KOG1824 TATA-binding protein-i 93.5 14 0.0003 42.6 21.4 189 313-514 175-405 (1233)
123 KOG1061 Vesicle coat complex A 93.4 6.2 0.00013 44.2 18.6 102 142-251 80-192 (734)
124 KOG1062 Vesicle coat complex A 93.4 17 0.00036 41.1 28.4 342 45-430 13-414 (866)
125 PF04063 DUF383: Domain of unk 93.4 0.96 2.1E-05 42.8 11.0 109 330-441 12-142 (192)
126 COG5181 HSH155 U2 snRNP splice 93.3 15 0.00033 40.3 20.6 258 178-475 609-871 (975)
127 KOG1788 Uncharacterized conser 93.3 4.3 9.3E-05 46.9 17.0 243 239-499 662-962 (2799)
128 KOG1242 Protein containing ada 93.1 8.1 0.00018 42.2 18.5 225 171-430 211-444 (569)
129 KOG3036 Protein involved in ce 92.9 7.4 0.00016 38.0 16.1 159 189-350 92-255 (293)
130 KOG2259 Uncharacterized conser 92.9 2.3 5.1E-05 46.7 14.1 149 347-519 366-515 (823)
131 KOG1077 Vesicle coat complex A 92.8 9.6 0.00021 42.4 18.4 93 383-485 314-407 (938)
132 COG1413 FOG: HEAT repeat [Ener 92.8 13 0.00028 38.0 20.5 188 173-430 43-242 (335)
133 PF08324 PUL: PUL domain; Int 92.7 1.1 2.3E-05 44.6 10.9 182 315-498 66-255 (268)
134 KOG1788 Uncharacterized conser 92.4 7.5 0.00016 45.0 17.5 265 152-430 665-982 (2799)
135 KOG2611 Neurochondrin/leucine- 92.3 11 0.00024 40.1 17.7 139 266-412 16-165 (698)
136 COG5231 VMA13 Vacuolar H+-ATPa 92.2 4.5 9.7E-05 40.9 14.0 221 237-473 167-427 (432)
137 PF06025 DUF913: Domain of Unk 92.1 8.1 0.00017 40.6 16.8 100 173-273 106-208 (379)
138 KOG1943 Beta-tubulin folding c 92.0 15 0.00032 42.8 19.6 135 372-512 355-497 (1133)
139 COG5215 KAP95 Karyopherin (imp 91.7 22 0.00049 38.8 19.4 163 313-483 363-538 (858)
140 PF11698 V-ATPase_H_C: V-ATPas 91.7 0.28 6.1E-06 42.4 4.5 70 356-430 45-115 (119)
141 KOG2999 Regulator of Rac1, req 91.6 4.6 0.0001 43.6 14.1 157 264-434 86-246 (713)
142 PF14668 RICTOR_V: Rapamycin-i 91.2 0.94 2E-05 35.7 6.7 68 330-400 4-71 (73)
143 KOG1240 Protein kinase contain 91.1 12 0.00025 44.2 17.6 72 351-430 653-725 (1431)
144 PF04078 Rcd1: Cell differenti 91.0 3.5 7.5E-05 40.6 11.8 149 234-397 65-228 (262)
145 KOG3665 ZYG-1-like serine/thre 90.5 13 0.00027 42.4 17.5 97 381-478 494-591 (699)
146 PF08569 Mo25: Mo25-like; Int 90.5 13 0.00029 38.3 16.3 225 169-412 72-310 (335)
147 KOG1060 Vesicle coat complex A 90.2 7.8 0.00017 43.6 14.8 138 274-436 300-464 (968)
148 PF05004 IFRD: Interferon-rela 89.9 24 0.00052 36.0 17.5 178 233-429 57-256 (309)
149 COG5096 Vesicle coat complex, 89.6 16 0.00034 41.6 16.9 154 280-472 39-193 (757)
150 PF07814 WAPL: Wings apart-lik 89.6 9.3 0.0002 39.8 14.6 233 142-388 35-356 (361)
151 KOG1061 Vesicle coat complex A 88.9 29 0.00063 39.1 18.0 106 173-292 86-191 (734)
152 PF11698 V-ATPase_H_C: V-ATPas 88.5 1.1 2.5E-05 38.7 5.6 73 400-475 44-116 (119)
153 KOG1832 HIV-1 Vpr-binding prot 88.4 4 8.6E-05 46.3 10.9 224 248-488 533-786 (1516)
154 KOG1060 Vesicle coat complex A 88.3 52 0.0011 37.4 22.9 252 188-478 120-425 (968)
155 PF14668 RICTOR_V: Rapamycin-i 87.4 3.6 7.8E-05 32.4 7.4 67 375-443 4-70 (73)
156 PF04063 DUF383: Domain of unk 87.1 3.8 8.3E-05 38.7 8.9 132 276-408 10-153 (192)
157 PRK09169 hypothetical protein; 86.5 1.1E+02 0.0023 39.2 24.4 262 217-499 163-427 (2316)
158 KOG1991 Nuclear transport rece 86.4 72 0.0016 37.1 19.7 118 217-347 410-537 (1010)
159 KOG0212 Uncharacterized conser 86.4 55 0.0012 35.8 17.7 195 261-480 250-451 (675)
160 PF12755 Vac14_Fab1_bd: Vacuol 86.2 5.4 0.00012 33.3 8.4 87 377-472 5-94 (97)
161 smart00638 LPD_N Lipoprotein N 85.7 18 0.00039 40.1 14.8 140 314-471 395-542 (574)
162 KOG1824 TATA-binding protein-i 85.2 82 0.0018 36.7 27.3 309 141-509 705-1030(1233)
163 PF06371 Drf_GBD: Diaphanous G 85.2 14 0.0003 34.2 11.7 97 148-247 83-186 (187)
164 PF02985 HEAT: HEAT repeat; I 85.1 1.9 4E-05 27.7 4.0 28 401-430 2-29 (31)
165 KOG1058 Vesicle coat complex C 84.7 77 0.0017 35.9 20.4 104 312-430 243-346 (948)
166 KOG1248 Uncharacterized conser 84.5 96 0.0021 36.9 20.2 240 230-495 665-920 (1176)
167 KOG4464 Signaling protein RIC- 84.4 58 0.0013 34.3 18.5 240 189-432 110-404 (532)
168 KOG2611 Neurochondrin/leucine- 83.4 70 0.0015 34.4 17.3 122 234-365 26-163 (698)
169 KOG2259 Uncharacterized conser 82.9 21 0.00046 39.5 13.0 196 263-484 236-452 (823)
170 KOG1820 Microtubule-associated 82.4 17 0.00036 42.0 12.7 103 261-386 336-442 (815)
171 PF11701 UNC45-central: Myosin 82.0 13 0.00027 33.9 9.6 147 314-470 5-155 (157)
172 PF08324 PUL: PUL domain; Int 81.6 18 0.00038 35.8 11.4 159 250-421 93-265 (268)
173 PF12755 Vac14_Fab1_bd: Vacuol 81.4 14 0.0003 30.8 8.9 74 418-497 3-78 (97)
174 KOG0567 HEAT repeat-containing 80.7 63 0.0014 32.1 16.7 180 215-430 65-249 (289)
175 PF11701 UNC45-central: Myosin 79.8 20 0.00044 32.5 10.2 135 218-366 4-140 (157)
176 KOG2137 Protein kinase [Signal 78.4 46 0.001 37.3 13.9 246 118-409 270-518 (700)
177 PRK09169 hypothetical protein; 78.1 2.2E+02 0.0047 36.7 25.5 54 445-500 459-512 (2316)
178 KOG4653 Uncharacterized conser 77.6 1.4E+02 0.0031 34.4 17.4 215 230-472 738-962 (982)
179 PF12031 DUF3518: Domain of un 77.6 7.5 0.00016 37.9 6.8 81 374-454 140-227 (257)
180 KOG1832 HIV-1 Vpr-binding prot 77.6 45 0.00098 38.4 13.5 179 165-365 593-798 (1516)
181 PF08167 RIX1: rRNA processing 77.0 45 0.00097 30.5 11.7 109 400-513 26-141 (165)
182 PF05004 IFRD: Interferon-rela 75.9 96 0.0021 31.6 19.6 153 313-474 87-257 (309)
183 COG5096 Vesicle coat complex, 75.3 1.4E+02 0.0029 34.3 16.8 125 371-513 68-193 (757)
184 PF12717 Cnd1: non-SMC mitotic 74.5 35 0.00075 31.6 10.5 92 327-431 2-93 (178)
185 PF12719 Cnd3: Nuclear condens 74.3 1E+02 0.0022 31.1 16.0 171 267-456 33-210 (298)
186 COG5240 SEC21 Vesicle coat com 73.2 1.5E+02 0.0033 32.7 22.0 74 413-495 499-577 (898)
187 PF06685 DUF1186: Protein of u 72.0 72 0.0016 31.4 12.3 77 172-259 72-153 (249)
188 KOG1058 Vesicle coat complex C 70.9 2E+02 0.0042 32.9 20.6 211 234-484 221-435 (948)
189 COG5209 RCD1 Uncharacterized p 70.9 22 0.00047 34.4 7.9 146 237-393 118-274 (315)
190 KOG4535 HEAT and armadillo rep 70.3 83 0.0018 33.9 12.7 134 373-511 448-599 (728)
191 KOG4653 Uncharacterized conser 70.0 1.2E+02 0.0027 34.9 14.6 55 146-206 744-798 (982)
192 PF08004 DUF1699: Protein of u 68.8 3.5 7.6E-05 35.7 2.0 50 3-78 47-98 (131)
193 KOG0414 Chromosome condensatio 68.7 62 0.0013 38.4 12.4 139 313-472 920-1062(1251)
194 KOG1991 Nuclear transport rece 67.8 2.5E+02 0.0054 33.0 23.4 186 232-434 475-675 (1010)
195 PF01347 Vitellogenin_N: Lipop 66.9 45 0.00098 37.2 11.1 140 314-471 433-586 (618)
196 PF06972 DUF1296: Protein of u 66.3 6.9 0.00015 29.3 2.9 25 70-94 21-45 (60)
197 PF02985 HEAT: HEAT repeat; I 66.2 8.9 0.00019 24.4 3.2 27 263-289 2-28 (31)
198 PF08569 Mo25: Mo25-like; Int 65.1 1.7E+02 0.0038 30.1 23.5 171 305-485 69-248 (335)
199 smart00638 LPD_N Lipoprotein N 62.1 2.3E+02 0.0049 31.4 15.4 150 312-480 357-515 (574)
200 KOG0414 Chromosome condensatio 60.9 25 0.00055 41.4 7.5 107 356-474 921-1027(1251)
201 PF12717 Cnd1: non-SMC mitotic 60.9 1.4E+02 0.003 27.5 17.4 92 233-343 2-93 (178)
202 KOG4464 Signaling protein RIC- 60.9 2.3E+02 0.005 30.1 18.3 103 232-343 110-232 (532)
203 KOG1240 Protein kinase contain 60.7 3.8E+02 0.0081 32.5 18.5 276 175-473 424-724 (1431)
204 KOG4535 HEAT and armadillo rep 59.6 1.5E+02 0.0032 32.1 12.1 136 372-514 405-558 (728)
205 PF12460 MMS19_C: RNAPII trans 58.9 2.5E+02 0.0053 29.8 17.5 136 276-435 249-399 (415)
206 COG5209 RCD1 Uncharacterized p 58.7 1.8E+02 0.004 28.3 14.9 125 149-275 65-203 (315)
207 PF12231 Rif1_N: Rap1-interact 57.3 1.8E+02 0.0039 30.4 12.8 104 371-479 59-168 (372)
208 PF12719 Cnd3: Nuclear condens 57.3 2.2E+02 0.0047 28.6 15.7 171 230-412 38-210 (298)
209 KOG1848 Uncharacterized conser 55.5 4.8E+02 0.01 32.1 22.7 126 276-413 901-1030(1610)
210 KOG0915 Uncharacterized conser 53.5 5.3E+02 0.012 32.1 22.4 168 339-514 938-1109(1702)
211 PF08216 CTNNBL: Catenin-beta- 52.0 17 0.00036 30.9 3.3 41 375-417 63-103 (108)
212 KOG2676 Uncharacterized conser 51.7 15 0.00032 37.8 3.3 67 420-486 375-441 (478)
213 KOG2676 Uncharacterized conser 50.4 20 0.00043 36.9 4.0 65 377-441 375-440 (478)
214 PF04564 U-box: U-box domain; 50.2 7.5 0.00016 30.4 0.9 25 74-98 46-70 (73)
215 PF06685 DUF1186: Protein of u 49.5 2.3E+02 0.005 27.9 11.3 45 396-441 70-121 (249)
216 KOG2025 Chromosome condensatio 48.2 1.7E+02 0.0037 33.2 10.9 127 356-495 83-212 (892)
217 PHA00617 ribbon-helix-helix do 47.9 27 0.00058 28.0 3.6 23 73-95 54-76 (80)
218 KOG0301 Phospholipase A2-activ 47.2 4.7E+02 0.01 29.5 17.3 146 262-423 590-739 (745)
219 smart00288 VHS Domain present 46.5 1.1E+02 0.0023 27.0 7.7 61 370-430 49-111 (133)
220 KOG2933 Uncharacterized conser 46.3 1.1E+02 0.0025 31.0 8.5 37 444-482 130-166 (334)
221 PF12031 DUF3518: Domain of un 46.1 61 0.0013 31.7 6.4 81 234-324 139-228 (257)
222 PF01365 RYDR_ITPR: RIH domain 46.0 73 0.0016 30.1 7.1 96 394-494 38-150 (207)
223 KOG1967 DNA repair/transcripti 44.6 1.6E+02 0.0035 34.3 10.3 149 261-424 867-1018(1030)
224 cd03561 VHS VHS domain family; 43.6 2.2E+02 0.0048 24.8 9.4 75 121-203 36-110 (133)
225 PF12460 MMS19_C: RNAPII trans 43.4 4.2E+02 0.0092 28.0 26.4 136 328-479 249-399 (415)
226 PF04821 TIMELESS: Timeless pr 40.6 3.8E+02 0.0082 26.6 16.6 138 166-323 33-189 (266)
227 COG5240 SEC21 Vesicle coat com 39.4 5.8E+02 0.013 28.4 19.6 54 373-430 502-555 (898)
228 COG5218 YCG1 Chromosome conden 39.0 3.4E+02 0.0073 30.3 11.2 105 366-484 99-205 (885)
229 cd03561 VHS VHS domain family; 38.2 2.3E+02 0.0049 24.8 8.5 61 370-430 49-112 (133)
230 KOG2062 26S proteasome regulat 37.5 1.9E+02 0.0042 32.9 9.3 65 261-343 554-619 (929)
231 PF08167 RIX1: rRNA processing 37.5 3.2E+02 0.0069 24.8 10.3 79 357-441 28-111 (165)
232 KOG1640 Predicted steroid redu 37.4 12 0.00025 37.3 0.1 11 3-13 62-72 (304)
233 KOG1967 DNA repair/transcripti 36.0 3.4E+02 0.0074 31.8 11.1 180 263-452 817-1004(1030)
234 COG5098 Chromosome condensatio 35.6 1.7E+02 0.0037 33.1 8.5 130 325-475 908-1038(1128)
235 cd03569 VHS_Hrs_Vps27p VHS dom 35.5 2E+02 0.0043 25.6 7.8 59 370-429 53-113 (142)
236 smart00288 VHS Domain present 35.3 2.1E+02 0.0047 25.0 7.9 71 401-473 39-110 (133)
237 TIGR02384 RelB_DinJ addiction 35.2 52 0.0011 26.5 3.6 31 73-103 17-48 (83)
238 cd02429 PTH2_like Peptidyl-tRN 35.2 75 0.0016 27.4 4.8 58 44-102 5-82 (116)
239 PF13251 DUF4042: Domain of un 35.0 2.8E+02 0.0061 25.9 9.0 74 313-388 102-175 (182)
240 PF12530 DUF3730: Protein of u 34.7 4.3E+02 0.0093 25.5 14.5 140 314-473 2-150 (234)
241 COG5218 YCG1 Chromosome conden 33.8 5.7E+02 0.012 28.6 11.8 111 393-517 86-198 (885)
242 KOG2062 26S proteasome regulat 33.8 5.1E+02 0.011 29.7 11.8 85 326-430 568-653 (929)
243 cd03568 VHS_STAM VHS domain fa 33.7 2.3E+02 0.005 25.3 7.9 60 370-430 49-110 (144)
244 KOG0301 Phospholipase A2-activ 33.7 7.5E+02 0.016 28.0 17.3 144 218-381 587-740 (745)
245 cd03569 VHS_Hrs_Vps27p VHS dom 33.6 3.4E+02 0.0075 24.1 9.1 73 121-203 40-112 (142)
246 KOG2137 Protein kinase [Signal 33.4 7.7E+02 0.017 28.1 14.8 68 355-429 390-457 (700)
247 PF11865 DUF3385: Domain of un 33.4 3.3E+02 0.0071 24.7 9.0 142 262-429 11-156 (160)
248 PF14837 INTS5_N: Integrator c 32.6 3.7E+02 0.0079 25.9 9.4 121 357-491 89-210 (213)
249 cd03567 VHS_GGA VHS domain fam 32.4 2.7E+02 0.0059 24.7 8.1 74 121-202 37-113 (139)
250 COG5116 RPN2 26S proteasome re 32.4 2.5E+02 0.0055 31.1 9.0 98 261-386 551-649 (926)
251 PF12125 Beta-TrCP_D: D domain 31.1 10 0.00022 26.0 -1.0 17 7-23 2-18 (40)
252 PF10363 DUF2435: Protein of u 31.0 1.8E+02 0.004 23.8 6.3 70 403-478 7-76 (92)
253 PF08713 DNA_alkylation: DNA a 30.7 1.5E+02 0.0032 27.8 6.6 76 399-487 120-197 (213)
254 PF08216 CTNNBL: Catenin-beta- 29.6 90 0.002 26.6 4.2 35 331-365 64-98 (108)
255 cd06561 AlkD_like A new struct 29.5 4.2E+02 0.009 24.3 9.4 73 402-486 108-182 (197)
256 COG5098 Chromosome condensatio 29.3 3.2E+02 0.007 31.0 9.3 103 313-432 934-1039(1128)
257 KOG1924 RhoA GTPase effector D 28.7 9.7E+02 0.021 27.8 14.7 129 373-505 207-354 (1102)
258 PF14726 RTTN_N: Rotatin, an a 28.5 2.6E+02 0.0056 23.4 6.7 63 357-422 30-92 (98)
259 KOG2933 Uncharacterized conser 28.3 4.8E+02 0.01 26.7 9.7 103 314-430 131-234 (334)
260 PF10363 DUF2435: Protein of u 28.2 1.9E+02 0.0041 23.7 5.9 60 372-434 17-76 (92)
261 PF01347 Vitellogenin_N: Lipop 27.9 1.4E+02 0.0031 33.2 6.9 148 313-479 396-558 (618)
262 PF12960 DUF3849: Protein of u 27.5 69 0.0015 28.3 3.3 29 66-95 30-58 (133)
263 PF08563 P53_TAD: P53 transact 26.6 18 0.00038 22.2 -0.4 10 64-73 10-19 (25)
264 PF15127 DUF4565: Protein of u 26.4 56 0.0012 26.7 2.3 21 85-105 63-83 (91)
265 PF01365 RYDR_ITPR: RIH domain 26.3 2E+02 0.0043 27.1 6.6 53 434-486 34-102 (207)
266 PF14726 RTTN_N: Rotatin, an a 25.6 3.3E+02 0.0071 22.7 6.9 51 314-364 29-81 (98)
267 PF05918 API5: Apoptosis inhib 25.5 1.5E+02 0.0033 32.8 6.2 18 373-390 55-72 (556)
268 PF13251 DUF4042: Domain of un 25.0 5.7E+02 0.012 23.9 12.0 143 278-430 3-174 (182)
269 PHA01748 hypothetical protein 24.3 97 0.0021 23.3 3.2 32 63-95 8-39 (60)
270 KOG1820 Microtubule-associated 23.6 1.2E+03 0.027 27.2 14.0 87 141-244 307-396 (815)
271 TIGR03180 UraD_2 OHCU decarbox 23.5 2.8E+02 0.0061 25.2 6.7 88 49-158 63-151 (158)
272 KOG1078 Vesicle coat complex C 23.3 1.2E+03 0.026 27.0 20.3 55 412-473 477-531 (865)
273 TIGR00283 arch_pth2 peptidyl-t 23.2 1.2E+02 0.0026 26.1 4.0 45 44-100 5-49 (115)
274 PF00790 VHS: VHS domain; Int 23.1 1.4E+02 0.0031 26.3 4.6 70 360-429 44-117 (140)
275 cd03568 VHS_STAM VHS domain fa 22.7 4.4E+02 0.0096 23.5 7.7 73 121-203 36-108 (144)
276 PF00790 VHS: VHS domain; Int 22.4 3.2E+02 0.007 24.0 6.8 71 401-473 44-117 (140)
277 PF01402 RHH_1: Ribbon-helix-h 22.2 1.8E+02 0.0039 19.2 4.0 26 72-97 13-38 (39)
278 PF14500 MMS19_N: Dos2-interac 22.1 7.7E+02 0.017 24.3 15.6 206 189-430 12-237 (262)
279 KOG1020 Sister chromatid cohes 21.6 1.4E+03 0.031 28.6 13.2 138 312-472 816-958 (1692)
280 PLN02892 isocitrate lyase 21.2 72 0.0016 35.0 2.7 29 68-97 316-344 (570)
281 PF10521 DUF2454: Protein of u 21.0 7.2E+02 0.016 24.7 9.8 73 313-386 120-202 (282)
282 PF00440 TetR_N: Bacterial reg 20.7 29 0.00062 24.3 -0.3 14 5-18 30-43 (47)
283 cd03567 VHS_GGA VHS domain fam 20.4 5.9E+02 0.013 22.6 8.0 60 370-429 50-115 (139)
284 cd02430 PTH2 Peptidyl-tRNA hyd 20.3 1.7E+02 0.0036 25.2 4.3 49 44-106 5-53 (115)
285 PF11864 DUF3384: Domain of un 20.3 1.1E+03 0.024 25.4 21.1 91 331-429 233-329 (464)
286 COG5116 RPN2 26S proteasome re 20.2 9.6E+02 0.021 26.8 10.6 132 280-430 516-650 (926)
No 1
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-82 Score=612.17 Aligned_cols=447 Identities=44% Similarity=0.675 Sum_probs=419.7
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhcCcccCCccccCCCCCCCCCCcH-HHHHHHHHHHhhcCCCCC
Q 010019 60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPL-IQSLERLKQLDLNSKDKF 138 (520)
Q Consensus 60 ~~~~isQetfDe~V~eni~~~~m~p~eal~~aI~qf~~qgvdls~i~~~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~~ 138 (520)
++|+|+|+|||.+|+|||++|.|.|+||.+++|+||+.||++|+||+|+.+.+ .....|. ...+.++++.+.+
T Consensus 1 ~~K~i~q~tfd~~v~eni~ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~-~~~~qp~i~~~~~~i~e~i~~----- 74 (461)
T KOG4199|consen 1 MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVN-PQTGQPVINETVDKIKEHIGQ----- 74 (461)
T ss_pred CchhHhHHHHHHHHHHHHHHHhcCccccchHHHHHHHhccCcccccccccCCC-CCCCCccHHHhHHHHHHHHHh-----
Confidence 46899999999999999999999999999999999999999999999998733 2223344 4678888888764
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCC
Q 010019 139 SDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG 218 (520)
Q Consensus 139 ~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~gg 218 (520)
-++++.+.+..|...|++ +..+|....++|++|.++-++.....++..++.++|.+|.++++++ ++++++.|
T Consensus 75 ---~~~E~s~ll~~l~d~ck~--~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q---pdl~da~g 146 (461)
T KOG4199|consen 75 ---KLEETTELLEQLADECKK--SLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ---PDLFDAEA 146 (461)
T ss_pred ---hhHHHHHHHHHHHHHHhh--hHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC---cchhcccc
Confidence 377788888888889997 9999999999999999999887655567788889999999988765 89999999
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchh
Q 010019 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVV 297 (520)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~ 297 (520)
+..++++|....++.++...++.|+...|.+||.||+.||+.++.+++...|..++. .+++++||+++.|.++||.||+
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 999999999888999999999999999999999999999999999999999988755 7999999999999999999999
Q ss_pred hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI 377 (520)
Q Consensus 298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~ 377 (520)
||++|+|+|.|++.|++..|+++++.+-+++++.+++.+|+.|++++|+|+.|++.||++.|+++|.++.++++..+.+.
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999878777889999
Q ss_pred HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCC
Q 010019 378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN 457 (520)
Q Consensus 378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~ 457 (520)
+|.+|+.|||+|++|..|++.||.+.++.++.+|+++|.|.+++|.+++-||+|.|++...+++.|+....+++|+.||.
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHHHcCCCCCCC
Q 010019 458 AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYNK 520 (520)
Q Consensus 458 ~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~Lg~~~~n~ 520 (520)
...|||+|||+|||+++|+.+++..++..|++++|+.++.+|++|+++|++|||||||++|||
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lr 449 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLR 449 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhH
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.5e-40 Score=320.56 Aligned_cols=359 Identities=15% Similarity=0.179 Sum_probs=308.0
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHH-HHHHHHHHHH
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRV-LDSCLKTMAL 202 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~-~~~al~~La~ 202 (520)
+-.|...+.| .|.+.+.++..++|+++++ +..+....++.+|.||.+|++|+....+-.++ .+||++++++
T Consensus 73 lp~lt~~l~S-------dDie~q~qav~kFR~~LS~-E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaS 144 (526)
T COG5064 73 LPQLTQQLFS-------DDIEQQLQAVYKFRKLLSK-ETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS 144 (526)
T ss_pred hHHHHHHHhh-------hHHHHHHHHHHHHHHHhcc-ccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhcc
Confidence 4566667777 7999999999999999887 46667888999999999999997652111122 5688888888
Q ss_pred hhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh--HHHHH
Q 010019 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQS 280 (520)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~--~~~~~ 280 (520)
.+..+ +.-++++|++|.++.+|. +.+.++.+.++|+|+|++.+++..|+.+.+.|++++|+.++.+... +++++
T Consensus 145 Gtt~Q--TkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn 220 (526)
T COG5064 145 GTTQQ--TKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRN 220 (526)
T ss_pred Ccccc--eEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHH
Confidence 77665 567789999999999997 4578899999999999999999999999999999999999997644 89999
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHH
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDAL 359 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~L 359 (520)
+.|+|+|||++..+.+.. ..|-+ ++|.|.+|+-+ .|++++.+|||||++|+ +..|..+.+.+.|..+.|
T Consensus 221 ~TWtLSNlcRGknP~P~w-------~~isq--alpiL~KLiys-~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RL 290 (526)
T COG5064 221 ATWTLSNLCRGKNPPPDW-------SNISQ--ALPILAKLIYS-RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL 290 (526)
T ss_pred hHHHHHHhhCCCCCCCch-------HHHHH--HHHHHHHHHhh-cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH
Confidence 999999999998876632 23433 68999999976 47899999999999999 677889999999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 010019 360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438 (520)
Q Consensus 360 l~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~ 438 (520)
+++|+.. ++.++.++++.++|+. |+|...+.|+++|+++.+..+|. +....+++++||+|+|++.++.++.+.
T Consensus 291 vElLs~~----sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs--~~ke~irKEaCWTiSNITAGnteqiqa 364 (526)
T COG5064 291 VELLSHE----SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS--SPKENIRKEACWTISNITAGNTEQIQA 364 (526)
T ss_pred HHHhcCc----cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc--ChhhhhhhhhheeecccccCCHHHHHH
Confidence 9999862 2479999999999996 78888899999999999999998 667799999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh---ChhhHHHHHhCCHHHHHHHHHHhCcc-hHHHHHHHHHH
Q 010019 439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR---NPENRKLLLSNGVEKLIRQAKENHEI-CKDAATDALRD 512 (520)
Q Consensus 439 i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~---~~e~~~~l~~~G~~~lL~~~~~~h~~-~~~~a~aALr~ 512 (520)
++++..+|+|+.+|.. .+..++|+|||||.|.+++ -|++..++++.|+.+.|...+.--+. .-.++-.|+++
T Consensus 365 vid~nliPpLi~lls~--ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~en 440 (526)
T COG5064 365 VIDANLIPPLIHLLSS--AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIEN 440 (526)
T ss_pred HHhcccchHHHHHHHH--HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHH
Confidence 9999999999999976 5889999999999999863 68999999999999999888865543 45666666665
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-39 Score=333.01 Aligned_cols=342 Identities=15% Similarity=0.187 Sum_probs=298.0
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHH---HHHHHHHH
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRV---LDSCLKTM 200 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~---~~~al~~L 200 (520)
...+.+.+-| .+.+.+..+...+|++.+.+.+ ++...+..+|.||.+|.+|+..+ ++.+ .+|||+++
T Consensus 68 ~~~~~~~~~S-------~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~--~~~lq~eAAWaLTnI 137 (514)
T KOG0166|consen 68 LELMLAALYS-------DDPQQQLTATQAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDD--NPTLQFEAAWALTNI 137 (514)
T ss_pred hHHHHHHHhC-------CCHHHHHHHHHHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCC--ChhHHHHHHHHHHHH
Confidence 4555666666 6788899999999999987444 66777777899999999998652 3444 56777777
Q ss_pred HHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHH
Q 010019 201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQ 279 (520)
Q Consensus 201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~ 279 (520)
++...++ +..++++|++|.++.+|. +.+..+.+.|+|+|+|++.+.+..|+.++..|++++|+.++..... ..++
T Consensus 138 Asgtse~--T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR 213 (514)
T KOG0166|consen 138 ASGTSEQ--TKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR 213 (514)
T ss_pred hcCchhh--ccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH
Confidence 7766555 688899999999999997 4578999999999999999999999999999999999999988755 8999
Q ss_pred HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHH
Q 010019 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDA 358 (520)
Q Consensus 280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~ 358 (520)
++.|+|+|||.+.++.++|. .+ ..++|.|..+|.. +|++++.++||||++|+ ..+|..+.+++.|+++.
T Consensus 214 n~tW~LsNlcrgk~P~P~~~-------~v--~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~ 283 (514)
T KOG0166|consen 214 NATWTLSNLCRGKNPSPPFD-------VV--APILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPR 283 (514)
T ss_pred HHHHHHHHHHcCCCCCCcHH-------HH--HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHH
Confidence 99999999999998877653 22 2479999999985 68999999999999999 78899999999999999
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHH
Q 010019 359 LLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA 437 (520)
Q Consensus 359 Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~ 437 (520)
|+.+|.... ..++.+|+++++|++ |+|...+.+++.|++|.|..+|..+ ....++++|||+|+|++.+++++.+
T Consensus 284 LV~lL~~~~----~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s-~~~~ikkEAcW~iSNItAG~~~qiq 358 (514)
T KOG0166|consen 284 LVDLLGHSS----PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS-PKESIKKEACWTISNITAGNQEQIQ 358 (514)
T ss_pred HHHHHcCCC----cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC-cchhHHHHHHHHHHHhhcCCHHHHH
Confidence 999999742 268899999999997 7888888999999999999999854 3556999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-hChhhHHHHHhCCHHHHHHHHH
Q 010019 438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENRKLLLSNGVEKLIRQAK 496 (520)
Q Consensus 438 ~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~-~~~e~~~~l~~~G~~~lL~~~~ 496 (520)
+++++|.++.|+.+|++ ++..+||+|||||.|+++ +++++..++++.|+.+.+-.++
T Consensus 359 aVida~l~p~Li~~l~~--~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL 416 (514)
T KOG0166|consen 359 AVIDANLIPVLINLLQT--AEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL 416 (514)
T ss_pred HHHHcccHHHHHHHHhc--cchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc
Confidence 99999999999999976 679999999999999986 6899999999999999888877
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=7e-31 Score=307.93 Aligned_cols=357 Identities=15% Similarity=0.130 Sum_probs=290.6
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcc-cccchhHHhcCCcHHHHHH
Q 010019 147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD-VQSTETFRTGGGPKLLVNI 225 (520)
Q Consensus 147 ~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~-~~~~~~i~~~ggi~~Lv~l 225 (520)
..++..|+.+|.. .......++++|+||.|+.+|++. ++..+..|...|+.++.. .+.+..+++.|++|.|+++
T Consensus 165 ~~Av~AL~nLs~~--~en~~~~IIeaGaVp~LV~LLsS~---d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~L 239 (2102)
T PLN03200 165 GLLTGALRNLCGS--TDGFWSATLEAGGVDILVKLLSSG---NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKL 239 (2102)
T ss_pred HHHHHHHHHHhcC--ccchHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 4467889999985 555556788999999999999874 778888888888777644 3458899999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCC---------hHHHHHHHHHHHHhcCCCCcch
Q 010019 226 LIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR---------NDSIQSLYDAIRVLLTPDDDQV 296 (520)
Q Consensus 226 L~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~---------~~~~~~a~~aL~~Ls~~dd~~v 296 (520)
|+++ .+..+++.|+|+|.++|.+++++|+.+++.|++++|++++.+.. ...+++|.|+|.|||.+...-.
T Consensus 240 L~sg-~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll 318 (2102)
T PLN03200 240 LGQG-NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALI 318 (2102)
T ss_pred HccC-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhH
Confidence 9753 45689999999999999999999999999999999999998543 2458899999999998632200
Q ss_pred hh-hh---------------------------hchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHH
Q 010019 297 VA-SQ---------------------------VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK 348 (520)
Q Consensus 297 ~~-~~---------------------------a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~ 348 (520)
++ +. ..+..+.+....+.+.|+++++......++..+.-+|..|..|..+++
T Consensus 319 ~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~ 398 (2102)
T PLN03200 319 LYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSR 398 (2102)
T ss_pred HHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHH
Confidence 00 00 001111111224558889988864333356788899999999999999
Q ss_pred HHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010019 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITV 427 (520)
Q Consensus 349 ~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~n 427 (520)
.+.+.|++++|+.+|... +.++++.++++|++|+ ++++.++.|++.|++|.|+++|. ++++.+++.++++|.+
T Consensus 399 ~L~~~daik~LV~LL~~~----~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~--s~s~~iQ~~A~~~L~n 472 (2102)
T PLN03200 399 KLNHAEAKKVLVGLITMA----TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG--LSSEQQQEYAVALLAI 472 (2102)
T ss_pred HHHhccchhhhhhhhccC----CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 999999999999999863 2489999999999999 55788999999999999999998 6689999999999999
Q ss_pred HhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHH
Q 010019 428 LSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAA 506 (520)
Q Consensus 428 La~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a 506 (520)
|+.++++++..++++|+++.|+++|.. ++..+|++|+|+|.|++..+++.+..+.+.|+.+.|..++... +.++.+|
T Consensus 473 La~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~A 550 (2102)
T PLN03200 473 LTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIA 550 (2102)
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999964 5789999999999999876555666666889998888888766 4788999
Q ss_pred HHHHHHcCCCC
Q 010019 507 TDALRDLGLDD 517 (520)
Q Consensus 507 ~aALr~Lg~~~ 517 (520)
..||.+|-+..
T Consensus 551 a~AL~nLi~~~ 561 (2102)
T PLN03200 551 AKTLTKLVRTA 561 (2102)
T ss_pred HHHHHHHHhcc
Confidence 99999996543
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.8e-30 Score=304.55 Aligned_cols=342 Identities=16% Similarity=0.175 Sum_probs=285.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCc
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGP 219 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi 219 (520)
.+.+.+.++...|+.+|.. +.+.+..+++.|+||.|+++|++. +...+..|+.+|.++..++ +.+..++++|++
T Consensus 416 ~~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 5678899999999999987 899999999999999999999985 6677888888888887554 347889999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh--
Q 010019 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV-- 297 (520)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~-- 297 (520)
|+|+++|+ +++.+++..|+|+|.|+|...++.|..+.+.|++++|+++|++++...++.|+|+|++|+...+....
T Consensus 491 P~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 491 PPLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 99999997 45789999999999999986555566666889999999999998778999999999999754433210
Q ss_pred h-------------------hh----hchH--HHHHH-HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHH
Q 010019 298 A-------------------SQ----VYGY--ARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSV 350 (520)
Q Consensus 298 ~-------------------~~----a~~~--a~~i~-~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i 350 (520)
+ +. +..+ .+..+ ..||++.|+++|+++ +..+++.|+|+|++++ .+.++++.+
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~av 647 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESL 647 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0 00 0000 11111 368999999999976 4679999999999999 678899999
Q ss_pred HhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019 351 AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428 (520)
Q Consensus 351 ~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL 428 (520)
+..|+|++++.+|+... .++.++++++|.+|+ ++++++..+++.|++++|+++|+ ..+..+++.++.+|.||
T Consensus 648 v~agaIpPLV~LLss~~----~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 648 ATDEIINPCIKLLTNNT----EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANL 721 (2102)
T ss_pred HHcCCHHHHHHHHhcCC----hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 99999999999998742 379999999999998 45567778899999999999998 67899999999999999
Q ss_pred hcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh---hhHHHHHhCCHHHHHHHHHHhC
Q 010019 429 SLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP---ENRKLLLSNGVEKLIRQAKENH 499 (520)
Q Consensus 429 a~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~---e~~~~l~~~G~~~lL~~~~~~h 499 (520)
+. +++.+.++...|+++.++++|+. ++++++++|+|+|.+|+.+.+ .....+...|+...|...+..-
T Consensus 722 l~-~~e~~~ei~~~~~I~~Lv~lLr~--G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~ 792 (2102)
T PLN03200 722 LS-DPEVAAEALAEDIILPLTRVLRE--GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST 792 (2102)
T ss_pred Hc-CchHHHHHHhcCcHHHHHHHHHh--CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC
Confidence 96 78899999999999999999976 678899999999999987655 3457778889998888877654
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-28 Score=240.33 Aligned_cols=350 Identities=16% Similarity=0.159 Sum_probs=289.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcH
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~ 220 (520)
.|+..+..+..++.+++- +.+++..|++-+++.+|+.-+-+ +.-++++.+.+.|.++..-...+..+...|++.
T Consensus 97 ~d~~Iq~aa~~alGnlAV---n~enk~liv~l~Gl~~Li~qmmt---d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~ 170 (550)
T KOG4224|consen 97 CDKCIQCAAGEALGNLAV---NMENKGLIVSLLGLDLLILQMMT---DGVEVQCNAVGCITNLATFDSNKVKIARSGALE 170 (550)
T ss_pred cchhhhhhhhhhhcccee---ccCCceEEEeccChHHHHHHhcC---CCcEEEeeehhhhhhhhccccchhhhhhccchh
Confidence 667777888888888887 68889999999998887764433 233455554555555543344578899999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhh
Q 010019 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQ 300 (520)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~ 300 (520)
++.++-+ +.+..+|..+..+|.++.. ..+||+.++.+|++|.||+++++++.+++..+|.+|++++.+.-.
T Consensus 171 pltrLak--skdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~------ 241 (550)
T KOG4224|consen 171 PLTRLAK--SKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA------ 241 (550)
T ss_pred hhHhhcc--cchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH------
Confidence 9999543 5678899999999999864 577999999999999999999998879999999999999986533
Q ss_pred hchHHHHHHHcC--CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019 301 VYGYARRFAKIG--IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (520)
Q Consensus 301 a~~~a~~i~~~g--~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a 378 (520)
.|.+++.+ .+|.|+++++++. +.++..|..||++|+.+.+....|+++|++|.++++|.+. +. .++.+.
T Consensus 242 ----Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~--~~--plilas 312 (550)
T KOG4224|consen 242 ----RKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP--MG--PLILAS 312 (550)
T ss_pred ----HHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc--ch--hHHHHH
Confidence 34677777 9999999999865 5588889999999999999999999999999999999763 32 577788
Q ss_pred HHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCC
Q 010019 379 CSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNA 458 (520)
Q Consensus 379 l~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~ 458 (520)
..+++|++.++-|...|+++|.+.+||++|+ +.+++++|-+|..+|+||+.....+...+.+.|+++.+.+++...|
T Consensus 313 VaCIrnisihplNe~lI~dagfl~pLVrlL~-~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p-- 389 (550)
T KOG4224|consen 313 VACIRNISIHPLNEVLIADAGFLRPLVRLLR-AGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP-- 389 (550)
T ss_pred HHHHhhcccccCcccceecccchhHHHHHHh-cCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--
Confidence 8999999999999999999999999999997 4678889999999999999988899999999999999999998754
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcCCCCC
Q 010019 459 QQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLGLDDY 518 (520)
Q Consensus 459 ~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg~~~~ 518 (520)
..+|.+-..++.-| +.+.+.+..+++.|+.+.|....... .+.++.|++||-||.-+..
T Consensus 390 vsvqseisac~a~L-al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 390 VSVQSEISACIAQL-ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred hhHHHHHHHHHHHH-HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 56777777777777 56788899999999998886654332 3567789999999986543
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-26 Score=242.02 Aligned_cols=361 Identities=15% Similarity=0.177 Sum_probs=289.7
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..++..+.+. .++..+.+|...|.+.+++ +.+.-..++++|++|.++.++.+. +..+...|.++|++
T Consensus 110 ~v~~lV~~l~~~------~~~~lq~eAAWaLTnIAsg--tse~T~~vv~agavp~fi~Ll~s~---~~~v~eQavWALgN 178 (514)
T KOG0166|consen 110 VVPRLVEFLSRD------DNPTLQFEAAWALTNIASG--TSEQTKVVVDAGAVPIFIQLLSSP---SADVREQAVWALGN 178 (514)
T ss_pred cHHHHHHHHccC------CChhHHHHHHHHHHHHhcC--chhhccccccCCchHHHHHHhcCC---cHHHHHHHHHHHhc
Confidence 467888888652 4577899999999999998 888888999999999999999985 77888888888888
Q ss_pred hhccccc-chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019 203 LVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (520)
Q Consensus 203 l~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a 281 (520)
+..|.+. |..+++.|++++|+.++..... -.....+.|+|.|+|......-..-.-..++|.|..++.+.+.+++..|
T Consensus 179 Iagds~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da 257 (514)
T KOG0166|consen 179 IAGDSPDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA 257 (514)
T ss_pred cccCChHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8877644 6677789999999999975432 4677899999999997542222212224678999999998888999999
Q ss_pred HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHH
Q 010019 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALL 360 (520)
Q Consensus 282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll 360 (520)
||+|++|+-+..... +.+.+.|++|.|+.+|... +..++..|+.+++|++ ++++..+.+++.|+++.|.
T Consensus 258 ~WAlsyLsdg~ne~i---------q~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~ 327 (514)
T KOG0166|consen 258 CWALSYLTDGSNEKI---------QMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLS 327 (514)
T ss_pred HHHHHHHhcCChHHH---------HHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHH
Confidence 999999997665444 3566999999999999864 3557788999999998 6888899999999999999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-CCHHHHHH
Q 010019 361 RCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-RSPENAAR 438 (520)
Q Consensus 361 ~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~-~~~~~~~~ 438 (520)
.+|..++.+ .+.++||++|+|++ |+.+..++++++|.+|.|+.+|. ..+-.++++|+|+++|++. +++++...
T Consensus 328 ~ll~~s~~~---~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~--~~ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 328 NLLSSSPKE---SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ--TAEFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred HHhccCcch---hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh--ccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence 999965443 58999999999996 88899999999999999999999 6689999999999999986 56888999
Q ss_pred HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-----C---hhhHHHHHhCCHHHHHHHHHHhCc--chHHHHHH
Q 010019 439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-----N---PENRKLLLSNGVEKLIRQAKENHE--ICKDAATD 508 (520)
Q Consensus 439 i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-----~---~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~a 508 (520)
+++.|.++++..+| .. .+..+...+--+|.|+-.. . ......+-+.|..+.|.. ++.|. +..+.|..
T Consensus 403 Lv~~giI~plcdlL-~~-~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~-LQ~hen~~Iy~~A~~ 479 (514)
T KOG0166|consen 403 LVEQGIIKPLCDLL-TC-PDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN-LQSHENEEIYKKAYK 479 (514)
T ss_pred HHHcCCchhhhhcc-cC-CChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH-hhccccHHHHHHHHH
Confidence 99999999999999 44 4566677888888888421 1 234455667788888855 45664 33444554
Q ss_pred HHHHc
Q 010019 509 ALRDL 513 (520)
Q Consensus 509 ALr~L 513 (520)
.+...
T Consensus 480 II~~y 484 (514)
T KOG0166|consen 480 IIDTY 484 (514)
T ss_pred HHHHh
Confidence 44443
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.5e-27 Score=228.05 Aligned_cols=320 Identities=17% Similarity=0.178 Sum_probs=276.2
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (520)
.+.++..++++. ++.+++.+-.++.++.-..+++.-++.-+|+++|+.-|. ++..++|+.+..++.++++- ++|
T Consensus 86 s~epvl~llqs~---d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmm--td~vevqcnaVgCitnLaT~-d~n 159 (550)
T KOG4224|consen 86 SNEPVLALLQSC---DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMM--TDGVEVQCNAVGCITNLATF-DSN 159 (550)
T ss_pred hhhHHHHHHhCc---chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhc--CCCcEEEeeehhhhhhhhcc-ccc
Confidence 455677777774 778888777777777655555677788899988876654 45688999999999999987 679
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHH
Q 010019 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (520)
Q Consensus 254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a 333 (520)
|..+...|++.+|+++-++.+..+++++..+|.+|+...++| |.++.+|++|.||.+++++ |.+++..+
T Consensus 160 k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR----------r~LV~aG~lpvLVsll~s~-d~dvqyyc 228 (550)
T KOG4224|consen 160 KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR----------RVLVHAGGLPVLVSLLKSG-DLDVQYYC 228 (550)
T ss_pred hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh----------hhhhccCCchhhhhhhccC-ChhHHHHH
Confidence 999999999999999777766699999999999999866554 4899999999999999975 68899999
Q ss_pred HHHHHHhccChhhHHHHHhcC--ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019 334 SIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411 (520)
Q Consensus 334 ~~aL~~La~~~e~~~~i~~~G--gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~ 411 (520)
|.+|++++++.-+++.+++.| .|+.|+++|+++. ..+...|--+|++|+...+-...|+++|++|.++++|+
T Consensus 229 ttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s----~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llq-- 302 (550)
T KOG4224|consen 229 TTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGS----DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQ-- 302 (550)
T ss_pred HHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCC----hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHh--
Confidence 999999999999999999999 9999999999853 37889999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHH
Q 010019 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKL 491 (520)
Q Consensus 412 ~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~l 491 (520)
++.-...-..+.+++||+. .|-|.--|+++|.+.+++++|.. .++.++|-.|...|+||++-+.-++..|.+.|+.+.
T Consensus 303 s~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~-~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k 380 (550)
T KOG4224|consen 303 SPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRA-GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK 380 (550)
T ss_pred CcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhc-CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH
Confidence 5555666778899999997 78889999999999999999975 477889999999999998878889999999999999
Q ss_pred HHHHHHhCc-chHHHHHHHHHHcCCCCC
Q 010019 492 IRQAKENHE-ICKDAATDALRDLGLDDY 518 (520)
Q Consensus 492 L~~~~~~h~-~~~~~a~aALr~Lg~~~~ 518 (520)
+.+++..-| +.+.+-++++..|..++.
T Consensus 381 l~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 381 LIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 999887776 788888999888887653
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=8.8e-26 Score=219.62 Aligned_cols=317 Identities=13% Similarity=0.168 Sum_probs=256.0
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhc--ccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVH--DVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~--~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e 251 (520)
-+|.|..-|-| +|-+.+..|..-...++. ..++.+.++++|.+|.+|++|... +..-++..|.|+|.|+++...
T Consensus 72 elp~lt~~l~S---dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~-q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFS---DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI-QRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhh---hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc-chhHHHHHHHHHHhhhccCcc
Confidence 45777766655 366666666666655553 335578889999999999999643 344567789999999999877
Q ss_pred hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHHHhcCC-ChhH
Q 010019 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL-SSPS 329 (520)
Q Consensus 252 ~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~lL~~~~-~~~~ 329 (520)
.....++++|++|.++.+|.+...++...+.|+|.|++.+.. -+|.++ +.|++++|+.++.+.. +-.+
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~----------~~RD~vL~~galeplL~ll~ss~~~ism 217 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE----------GCRDYVLQCGALEPLLGLLLSSAIHISM 217 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCch----------hHHHHHHhcCchHHHHHHHHhccchHHH
Confidence 777777899999999999999888999999999999997653 245565 8999999999998754 3478
Q ss_pred HHHHHHHHHHhcc--Chh-hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHH
Q 010019 330 LISASIALKAVAV--NDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLI 405 (520)
Q Consensus 330 ~~~a~~aL~~La~--~~e-~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv 405 (520)
++++.|+|+||+. ++. ....|-. .+|.|.+++-. .+++++..||++|+.|+ +..+.-++|++.|..+.|+
T Consensus 218 lRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLiys----~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLv 291 (526)
T COG5064 218 LRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLIYS----RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLV 291 (526)
T ss_pred HHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHHhh----cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHH
Confidence 8999999999994 322 2222322 36778887764 23589999999999999 4557778899999999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019 406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 406 ~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~ 485 (520)
++|. +.+..|+..++..+.|+..+++.+.+.++.+|.++.+..+|. ++. ..+.|+|||.|.|+++++.++.+.+++
T Consensus 292 ElLs--~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs-~~k-e~irKEaCWTiSNITAGnteqiqavid 367 (526)
T COG5064 292 ELLS--HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPK-ENIRKEACWTISNITAGNTEQIQAVID 367 (526)
T ss_pred HHhc--CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc-Chh-hhhhhhhheeecccccCCHHHHHHHHh
Confidence 9998 678899999999999999999999999999999999998885 443 489999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCc-chHHHHHHHHHHcC
Q 010019 486 NGVEKLIRQAKENHE-ICKDAATDALRDLG 514 (520)
Q Consensus 486 ~G~~~lL~~~~~~h~-~~~~~a~aALr~Lg 514 (520)
....|.|..++.... -.+.+|+=|+.++.
T Consensus 368 ~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 368 ANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999988887664 45677777777664
No 10
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=4.5e-23 Score=200.67 Aligned_cols=320 Identities=16% Similarity=0.154 Sum_probs=263.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhc-ccccchhHHhcCCc
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVH-DVQSTETFRTGGGP 219 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~-~~~~~~~i~~~ggi 219 (520)
++...+.++|..|-.+..+ -|. +..+.+...++.+|... ..+.++....+..+..-+- ...+|+.|++.+..
T Consensus 119 ~~~~~l~ksL~al~~lt~~--qpd----l~da~g~~vvv~lL~~~-~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHK--QPD----LFDAEAMAVVLKLLALK-VESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred CchhHHHHHHHHHHHhhcC--Ccc----hhccccHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 7788899999999888875 343 45678999999999643 2466777777777744332 22458999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh---------hhHHHHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhc
Q 010019 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNE---------VVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLL 289 (520)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e---------~nr~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls 289 (520)
+.+...|.++... .+.+..+|+++.+..+++ ..-..|.+.|+...|++++..+ ++..+..+|.+|..|+
T Consensus 192 ~Li~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 192 ELILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999999876554 677788888888765321 1234677888999999999988 4488889999999999
Q ss_pred CCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhcc
Q 010019 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS 366 (520)
Q Consensus 290 ~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~---~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~ 366 (520)
..++ .++.|++.||+..|+.+|.+..+ .+..+.+|.+|+.|+.+|+++..|++.||.+.++.++..|
T Consensus 271 Vr~E----------~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h 340 (461)
T KOG4199|consen 271 VRDE----------ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH 340 (461)
T ss_pred HHHH----------HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc
Confidence 8764 36789999999999999998553 3566889999999999999999999999999999999988
Q ss_pred CCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcH
Q 010019 367 GLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG 445 (520)
Q Consensus 367 ~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i 445 (520)
.++ +.|..++|.++.-|+ ..|++...+++.|+-...+++|++|+....+|+++||.++||+.|+.+++..++..|+-
T Consensus 341 ~~~--p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE 418 (461)
T KOG4199|consen 341 SDD--PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIE 418 (461)
T ss_pred CCC--hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHH
Confidence 765 589999999999999 67999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019 446 DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL 484 (520)
Q Consensus 446 ~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~ 484 (520)
.++..++..|++... .|-.|||.| ..+.++++.+.
T Consensus 419 ~Li~~A~~~h~tce~---~akaALRDL-Gc~v~lre~wt 453 (461)
T KOG4199|consen 419 KLIRTAKANHETCEA---AAKAALRDL-GCDVYLREEWT 453 (461)
T ss_pred HHHHHHHhcCccHHH---HHHHHHHhc-CcchhhHHHhc
Confidence 999999998876644 455578887 44566665553
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=1.6e-19 Score=197.87 Aligned_cols=343 Identities=15% Similarity=0.170 Sum_probs=278.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHH
Q 010019 147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNIL 226 (520)
Q Consensus 147 ~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL 226 (520)
.-++.-|-+++. +......+.+.|.|+.|+++|++. +.+++..+++.|..++-..+++..+.+.|.++.|+++|
T Consensus 267 rv~~~lLlNLAe---d~~ve~kM~~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 267 RVAFYLLLNLAE---DPRVELKMVNKGIVSLLVKCLDRE---NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHhc---ChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 335555666666 778888889999999999999875 67888877788877765556689999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHH
Q 010019 227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (520)
Q Consensus 227 ~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~ 306 (520)
. +++.+++..++++|.|++. ++.+|..+++.|++|.|+.+|... .....+..+|.+||.+|+.|.
T Consensus 341 ~--s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~---------- 405 (708)
T PF05804_consen 341 P--SENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARS---------- 405 (708)
T ss_pred c--CCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHH----------
Confidence 7 4578899999999999965 577899999999999999999864 344568899999999988776
Q ss_pred HHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHH------------h---ccC----
Q 010019 307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI------------D---DSG---- 367 (520)
Q Consensus 307 ~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL------------~---~~~---- 367 (520)
.+...+++|.|+++|-.++++.+..++.+++.||+.+..+.+.+.+.||++.|++.. + .|.
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLK 485 (708)
T ss_pred HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHH
Confidence 667778999999998887766677788899999999999999999999988765432 1 121
Q ss_pred ---------------CCCcHHHHHHHHHHHHHhhCCC-chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010019 368 ---------------LQGNKTVARICCSLLSKLAGSD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431 (520)
Q Consensus 368 ---------------~~~~~~v~~~al~aL~~La~~~-~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~ 431 (520)
...+.+...+|+++|+||+..+ +....+-+.+.+|.|...|......++++-+++..+..+|.
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~- 564 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS- 564 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-
Confidence 0113578889999999998655 44444456799999999998766677899999999999995
Q ss_pred CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC-CHHHHHHHHHHhC-cchHHHHHHH
Q 010019 432 SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN-GVEKLIRQAKENH-EICKDAATDA 509 (520)
Q Consensus 432 ~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~-G~~~lL~~~~~~h-~~~~~~a~aA 509 (520)
+++.+..+.+.|.++.++++|.....|.+..-+.+++...+. .+++.+..++.. ++...+..+|... +....++-.|
T Consensus 565 d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll-~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~ 643 (708)
T PF05804_consen 565 DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLL-FHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNA 643 (708)
T ss_pred CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHH-cChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 888889999999999999999999899999999999999995 468888888874 8888887776433 4556666666
Q ss_pred HHH
Q 010019 510 LRD 512 (520)
Q Consensus 510 Lr~ 512 (520)
|--
T Consensus 644 Ldi 646 (708)
T PF05804_consen 644 LDI 646 (708)
T ss_pred HHH
Confidence 643
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.85 E-value=4.8e-18 Score=186.38 Aligned_cols=305 Identities=17% Similarity=0.173 Sum_probs=252.5
Q ss_pred HHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 010019 176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE 255 (520)
Q Consensus 176 p~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~ 255 (520)
+.+-.++++ +..++..|+..|.++..+......++..|+++.|+++|.+ ++.+++..++..|.+++. ..+||.
T Consensus 253 kk~~~l~~k----QeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr--~n~ellil~v~fLkkLSi-~~ENK~ 325 (708)
T PF05804_consen 253 KKLQTLIRK----QEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR--ENEELLILAVTFLKKLSI-FKENKD 325 (708)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHcC-CHHHHH
Confidence 344445544 4566677888889988777667888899999999999985 468899999999999965 567999
Q ss_pred HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHH
Q 010019 256 SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI 335 (520)
Q Consensus 256 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~ 335 (520)
.+.+.|+++.|++++.+...+.+..+.++|.||+.+++.|. .|++.|++|.|+.+|... .....++.
T Consensus 326 ~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~----------~mV~~GlIPkLv~LL~d~---~~~~val~ 392 (708)
T PF05804_consen 326 EMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS----------QMVSLGLIPKLVELLKDP---NFREVALK 392 (708)
T ss_pred HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH----------HHHHCCCcHHHHHHhCCC---chHHHHHH
Confidence 99999999999999998777889999999999999988766 889999999999999753 23455788
Q ss_pred HHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHH-------
Q 010019 336 ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS------- 408 (520)
Q Consensus 336 aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL------- 408 (520)
.|.+|+.+++++..+...++++.++++|-.+++. .+..+.++++.|||.++.|.+.|.+.||++.|++..
T Consensus 393 iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~---~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l 469 (708)
T PF05804_consen 393 ILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEE---EVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL 469 (708)
T ss_pred HHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCc---cccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH
Confidence 8999999999999999999999999998776543 566778889999999999999898888887766532
Q ss_pred --------hccC---------------------CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCH
Q 010019 409 --------ARFS---------------------DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQ 459 (520)
Q Consensus 409 --------~~~~---------------------~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~ 459 (520)
..|. ++++..-+++++|+||+..+.+..+.+-+.+.++.+...|..+....
T Consensus 470 LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~d 549 (708)
T PF05804_consen 470 LLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASED 549 (708)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCCh
Confidence 1122 35677788999999999877666666767899999999998887788
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHH
Q 010019 460 QLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKD 504 (520)
Q Consensus 460 ~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~ 504 (520)
.++-+++..+..++ .+++....+.+.|+.+.|..++..+.+..+
T Consensus 550 Dl~LE~Vi~~gtla-~d~~~A~lL~~sgli~~Li~LL~~kqeDdE 593 (708)
T PF05804_consen 550 DLLLEVVILLGTLA-SDPECAPLLAKSGLIPTLIELLNAKQEDDE 593 (708)
T ss_pred HHHHHHHHHHHHHH-CCHHHHHHHHhCChHHHHHHHHHhhCchHH
Confidence 89999999999884 678888888899999999999988865433
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=1.5e-16 Score=176.97 Aligned_cols=365 Identities=18% Similarity=0.195 Sum_probs=264.6
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
.+.-.|-..+.. .|.++ -.+.|.++.. +++........|-+|.|+++|--.+.++.+....|-.+|-
T Consensus 197 ets~sllsml~t-------~D~ee---~ar~fLemSs---s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALH 263 (2195)
T KOG2122|consen 197 ETSNSLLSMLGT-------DDEEE---MARTFLEMSS---SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALH 263 (2195)
T ss_pred hhhhHHhhhccc-------CCHHH---HHHHHHHhcc---CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHH
Confidence 334456566554 45544 4566667776 7888888999999999999997665556677777777787
Q ss_pred HhhcccccchhHHh-cCCcHHHH------H----HHhcCCC------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHH
Q 010019 202 LLVHDVQSTETFRT-GGGPKLLV------N----ILIDGNE------DPEILNSGFAVVAASATGNEVVKESYMELKIDE 264 (520)
Q Consensus 202 ~l~~~~~~~~~i~~-~ggi~~Lv------~----lL~~~~~------~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~ 264 (520)
++.+.++....-+. ...++.|= + .|..+.. +..-.+.|+.+|-.+. -+|+.|..+.+.|++.
T Consensus 264 NIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~Lq 342 (2195)
T KOG2122|consen 264 NIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQ 342 (2195)
T ss_pred HHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHH
Confidence 88766532111111 11111111 1 1222211 1223346667776664 4688999999999999
Q ss_pred HHHHHHhc----CC----h----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019 265 LILEILSR----QR----N----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (520)
Q Consensus 265 ~Lv~lL~~----~~----~----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~ 332 (520)
.|-++|.- |. + .+.+.|..+|.||+++|... .+..-...|.++.||..|.+.+ .+++.-
T Consensus 343 AIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N--------Ka~LCs~rgfMeavVAQL~s~p-eeL~QV 413 (2195)
T KOG2122|consen 343 AIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN--------KATLCSQRGFMEAVVAQLISAP-EELLQV 413 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc--------hhhhhhhhhHHHHHHHHHhcCh-HHHHHH
Confidence 98887753 11 1 66677999999999988542 2334446799999999998765 357777
Q ss_pred HHHHHHHhccC-hh-hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhc-CCHHHHHHHH
Q 010019 333 ASIALKAVAVN-DE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIEN-GGMDKLIVVS 408 (520)
Q Consensus 333 a~~aL~~La~~-~e-~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~-g~l~~Lv~lL 408 (520)
.+..|+||+-+ |. .++.+-+.|-|..|..+--....+ .-++..+.+||||+. +.+||..|... |++..||.+|
T Consensus 414 ~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE---sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~L 490 (2195)
T KOG2122|consen 414 YASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE---STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTL 490 (2195)
T ss_pred HHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc---chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhc
Confidence 88999999954 33 466677889898888774332222 478999999999985 68999999765 6689999999
Q ss_pred hcc--CCCHHHHHHHHHHHHHHhc---CCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHH
Q 010019 409 ARF--SDDASVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLL 483 (520)
Q Consensus 409 ~~~--~~~~~v~~~a~~aL~nLa~---~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l 483 (520)
..- +..-.|.+.|-++|.|.+. .+.++++.+.+...+..|++.|+.|+ -.+.-++|.+|+||.+|+++.++.+
T Consensus 491 SY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S--LTiVSNaCGTLWNLSAR~p~DQq~L 568 (2195)
T KOG2122|consen 491 SYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS--LTIVSNACGTLWNLSARSPEDQQML 568 (2195)
T ss_pred cccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc--eEEeecchhhhhhhhcCCHHHHHHH
Confidence 632 2346789999999998753 46688899999999999999999874 5677899999999999999999999
Q ss_pred HhCCHHHHHHHHHHh-CcchHHHHHHHHHHcC
Q 010019 484 LSNGVEKLIRQAKEN-HEICKDAATDALRDLG 514 (520)
Q Consensus 484 ~~~G~~~lL~~~~~~-h~~~~~~a~aALr~Lg 514 (520)
.+.|++.+|+.++.. |...-.=+++|||||=
T Consensus 569 wD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 569 WDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred HhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 999999999887644 4555556789999983
No 14
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.74 E-value=1.5e-15 Score=152.66 Aligned_cols=368 Identities=16% Similarity=0.188 Sum_probs=260.6
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhccc----CcHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC----GSKRVLDSC 196 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~----~~~~~~~~a 196 (520)
..+++-|++..+| .|.+...+..+.|.+.|.. +.++|..+.+.||-++++++|+..+. .+.++..-+
T Consensus 86 a~~le~Lrq~psS-------~d~ev~~Q~~RaLgNiCyd--n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~ 156 (604)
T KOG4500|consen 86 AEALELLRQTPSS-------PDTEVHEQCFRALGNICYD--NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVA 156 (604)
T ss_pred HHHHHHHHhCCCC-------CcccHHHHHHHHHhhhhcc--CchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHH
Confidence 3567888888777 6788889999999999997 99999999999998888888876542 223555555
Q ss_pred HHHHHHhhccccc-chhHHhcCCcHHHHHHHhcCCCChHHH---------------------------------------
Q 010019 197 LKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEIL--------------------------------------- 236 (520)
Q Consensus 197 l~~La~l~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~--------------------------------------- 236 (520)
...|.+...++++ +..+++.|.++.|..++.-+.++.+..
T Consensus 157 ~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v 236 (604)
T KOG4500|consen 157 FGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV 236 (604)
T ss_pred HHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh
Confidence 6666666655543 566778888887776665444333222
Q ss_pred -----HHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh--------HHHHHHHHHHHHhcCCCCcchhhhhhch
Q 010019 237 -----NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--------DSIQSLYDAIRVLLTPDDDQVVASQVYG 303 (520)
Q Consensus 237 -----~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~--------~~~~~a~~aL~~Ls~~dd~~v~~~~a~~ 303 (520)
+-.+..+... ..++..|-.+.+.|.++.++++++...+ .....+|....-|.++|+.-
T Consensus 237 ~~d~~eM~feila~~-aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-------- 307 (604)
T KOG4500|consen 237 REDIDEMIFEILAKA-AENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-------- 307 (604)
T ss_pred ccchhhHHHHHHHHH-hcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH--------
Confidence 1222333332 2455566678888999999999887321 34455777777777777642
Q ss_pred HHHHHHHcC-CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhc-cCCCCcHHHHHHHHHH
Q 010019 304 YARRFAKIG-IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSL 381 (520)
Q Consensus 304 ~a~~i~~~g-~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~-~~~~~~~~v~~~al~a 381 (520)
+.+.+.+ .+.-++..+++ .|...+..+..+|+|++.+|++|..+++.|.+..|+++|.. +..++|.+++.++|++
T Consensus 308 --q~L~~~p~~l~~~~sw~~S-~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 308 --QKLHADPQFLDFLESWFRS-DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred --HHHhcCcHHHHHHHHHhcC-CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 2454444 56777777765 36778888999999999999999999999999999999876 5556788999999999
Q ss_pred HHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC-cHHHHHHHHHhCCCCHH
Q 010019 382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG-SGDLAIQAMLKFPNAQQ 460 (520)
Q Consensus 382 L~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G-~i~~lv~~L~~~~~~~~ 460 (520)
|+||+..-.||.++..+|..+.++..++ ...|.|+..-.++|+.+-...+-.+.++...- .++.+++- .+.|+..+
T Consensus 385 LRnl~IPv~nka~~~~aGvteaIL~~lk--~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W-sks~D~aG 461 (604)
T KOG4500|consen 385 LRNLMIPVSNKAHFAPAGVTEAILLQLK--LASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW-SKSPDFAG 461 (604)
T ss_pred HHhccccCCchhhccccchHHHHHHHHH--hcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh-hhCCccch
Confidence 9999999999999999999999999999 55788999999999988764443444443331 23333332 22344444
Q ss_pred HHHHHHHHHHHHhh--hChhhHHHHHhC-CHHHHHHHHHHhCcchHHHHHHHHHH
Q 010019 461 LQRSSCFMIRNLVA--RNPENRKLLLSN-GVEKLIRQAKENHEICKDAATDALRD 512 (520)
Q Consensus 461 vqk~A~~aL~nL~~--~~~e~~~~l~~~-G~~~lL~~~~~~h~~~~~~a~aALr~ 512 (520)
|--+.-+.+.-+.. ...+....+.+. |+...+..+-+.|-.-+.+|--||--
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~ 516 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLS 516 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence 54454444444432 355666666666 56777877778887777777666643
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=3.8e-15 Score=160.41 Aligned_cols=344 Identities=16% Similarity=0.181 Sum_probs=252.0
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l 203 (520)
+..-.+.+.+ .++..+..|...|+.+|.. +..-+..+.+-|+||.||.+|.+. ..+++..|.++|-+|
T Consensus 235 lpe~i~mL~~-------q~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~~---~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 235 LPEVISMLMS-------QDPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDHR---NDEVQRQACGALRNL 302 (717)
T ss_pred cHHHHHHHhc-------cChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcCC---cHHHHHHHHHHHHhh
Confidence 3344556655 6777888899999999998 888899999999999999999884 778887777887777
Q ss_pred hccc---ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHH-hcCC-----
Q 010019 204 VHDV---QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL-SRQR----- 274 (520)
Q Consensus 204 ~~~~---~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL-~~~~----- 274 (520)
..+. .++-++.+.+|++.++++|+. ..|.++.+.....+.|+.+ ++..|..++.. ++..|..-+ ..++
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~-t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~ 379 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRH-TQDDEVRELITGILWNLSS-NDALKMLIITS-ALSTLTDNVIIPHSGWEEE 379 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHh-hcchHHHHHHHHHHhcccc-hhHHHHHHHHH-HHHHHHHhhcccccccCCC
Confidence 6443 347788899999999999984 5678999999999999865 56777777664 344444333 2222
Q ss_pred --------hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cCCHHHHHHHHhc-----CCChhHHHHHHHHHHHh
Q 010019 275 --------NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHA-----GLSSPSLISASIALKAV 340 (520)
Q Consensus 275 --------~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g~l~~Lv~lL~~-----~~~~~~~~~a~~aL~~L 340 (520)
.++..++...|+|++...+ +-.+.+.+ .|.|..|+..++. ..|...++++.-.|.||
T Consensus 380 ~~~~~~~~~~vf~n~tgcLRNlSs~~~---------eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNL 450 (717)
T KOG1048|consen 380 PAPRKAEDSTVFRNVTGCLRNLSSAGQ---------EAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNL 450 (717)
T ss_pred CcccccccceeeehhhhhhccccchhH---------HHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhc
Confidence 2677889999999997432 11235653 5999999999883 22445668888889999
Q ss_pred cc--Chh----hHHHHH------------------------------------------------hcCChHHHHHHHhcc
Q 010019 341 AV--NDE----ICKSVA------------------------------------------------ENGGIDALLRCIDDS 366 (520)
Q Consensus 341 a~--~~e----~~~~i~------------------------------------------------~~Ggv~~Ll~lL~~~ 366 (520)
+- ..| ..+... ..-.|.+=+.+|...
T Consensus 451 SYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s 530 (717)
T KOG1048|consen 451 SYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALS 530 (717)
T ss_pred CchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHh
Confidence 73 211 000000 001122324445432
Q ss_pred CCCCcHHHHHHHHHHHHHhh-CC----CchHHHH-HhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019 367 GLQGNKTVARICCSLLSKLA-GS----DSNKSAI-IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM 440 (520)
Q Consensus 367 ~~~~~~~v~~~al~aL~~La-~~----~~~k~~I-v~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~ 440 (520)
. +...++.+.++|-||+ +. ...+..+ .+..|++.|+++|+ .++..|++.++++|.||+. ++.|+..|.
T Consensus 531 ~---n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~--~~~~~vv~s~a~~LrNls~-d~rnk~lig 604 (717)
T KOG1048|consen 531 K---NDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR--NDDSDVVRSAAGALRNLSR-DIRNKELIG 604 (717)
T ss_pred c---chHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh--cCCchHHHHHHHHHhhhcc-Cchhhhhhh
Confidence 2 3478999999999997 32 2445555 78899999999999 8899999999999999995 788877776
Q ss_pred hcCcHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019 441 EAGSGDLAIQAMLKFPN----AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN 498 (520)
Q Consensus 441 ~~G~i~~lv~~L~~~~~----~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~ 498 (520)
.++++-|++.|-.+.+ +.++...+|..|.|++..+.++...+.+.+..+-|+.+.+.
T Consensus 605 -k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 605 -KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred -cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence 7889999999965533 36788899999999998899999999998555455444444
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=5.7e-16 Score=172.44 Aligned_cols=323 Identities=14% Similarity=0.148 Sum_probs=245.0
Q ss_pred hhHHHHHHHHHHHHHHhcCC-CChhhHHHHHhcCcHHHHHHHH-------hhcc-----cCcHHHHHHHHHHHHHhhccc
Q 010019 141 EDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSIC-------YKMR-----CGSKRVLDSCLKTMALLVHDV 207 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~-~~~~~r~~i~~~Gaip~Lv~lL-------~~~~-----~~~~~~~~~al~~La~l~~~~ 207 (520)
.+.+....|-+.|+++-..+ +...-|..+.---+...+...| .+.. ..+...++.|+.+|.-+..|.
T Consensus 250 ~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE 329 (2195)
T KOG2122|consen 250 EDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE 329 (2195)
T ss_pred hhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH
Confidence 46677778888888877652 1222222222222233233332 2211 122344778999999888887
Q ss_pred ccchhHHhcCCcHHHHHHHhcCC-------C---ChHHHHHHHHHHHHHhcCChhhHHHHH-hcCCHHHHHHHHhcCChH
Q 010019 208 QSTETFRTGGGPKLLVNILIDGN-------E---DPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRND 276 (520)
Q Consensus 208 ~~~~~i~~~ggi~~Lv~lL~~~~-------~---~~~v~~~a~~~L~~~~~~~e~nr~~i~-~~g~i~~Lv~lL~~~~~~ 276 (520)
+-|..+-+-||++.+-+||.-.. . .-.+..++..+|.|+...+..||..+. ..|.++.+|..|.+..++
T Consensus 330 EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pee 409 (2195)
T KOG2122|consen 330 EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEE 409 (2195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHH
Confidence 77777778899999888774211 1 235778999999999998899998887 558999999999998889
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhc-C
Q 010019 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAEN-G 354 (520)
Q Consensus 277 ~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~-G 354 (520)
+++-.+.+|+||+=..|... .+.+-+.|-+..|+..--.......++..+.|||||+ ..-+||..|..- |
T Consensus 410 L~QV~AsvLRNLSWRAD~nm--------KkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDG 481 (2195)
T KOG2122|consen 410 LLQVYASVLRNLSWRADSNM--------KKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDG 481 (2195)
T ss_pred HHHHHHHHHHhccccccccH--------HHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccc
Confidence 99999999999997655432 1234477888888776543334457899999999999 567899998874 6
Q ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 355 gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
++..|+.+|.......--.+++.+=++|+|.+ .+.+.|+.+.+...+..|++.|+ +.+-.|+-++|++||||..
T Consensus 482 ALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK--S~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 482 ALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK--SHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred hHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh--hcceEEeecchhhhhhhhc
Confidence 68899999975321212368899999999985 56788888899999999999999 5567899999999999999
Q ss_pred CCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 431 RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 431 ~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
|+|+-.+.+.+.|+++.+..++ |+++.-+-+-++.+|+||...
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLI--hSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLI--HSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHH--hhhhhhhhhhHHHHHHHHhcC
Confidence 9999999999999999999998 778888999999999999753
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.70 E-value=4.4e-15 Score=159.97 Aligned_cols=352 Identities=13% Similarity=0.091 Sum_probs=261.0
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l 203 (520)
|..|...+.+ ...+.+.+++..||++..+..+..|+..+.+.|+||.++++|+.. .|.++...+..+|.+|
T Consensus 277 I~kLv~Ll~~-------~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t--~D~ev~e~iTg~LWNL 347 (717)
T KOG1048|consen 277 IPKLVALLDH-------RNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHT--QDDEVRELITGILWNL 347 (717)
T ss_pred HHHHHHHhcC-------CcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhh--cchHHHHHHHHHHhcc
Confidence 5677777776 778899999999999998623446999999999999999999975 3666766655666665
Q ss_pred hcccccchhHHhcCCcHHHHH-HHhcCC-----------CChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHH
Q 010019 204 VHDVQSTETFRTGGGPKLLVN-ILIDGN-----------EDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEIL 270 (520)
Q Consensus 204 ~~~~~~~~~i~~~ggi~~Lv~-lL~~~~-----------~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL 270 (520)
...+.-++.++.. +++.|-+ ++.-++ ...++...+..+|+|+.+..++.|+.+.+. |.|..|+..+
T Consensus 348 SS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~i 426 (717)
T KOG1048|consen 348 SSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSI 426 (717)
T ss_pred cchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHH
Confidence 4332223333333 2333322 222222 135677888999999999889999999976 7899999988
Q ss_pred hcC------ChHHHHHHHHHHHHhcCCCCcchh-------------------------hhhhchH-----------HHH-
Q 010019 271 SRQ------RNDSIQSLYDAIRVLLTPDDDQVV-------------------------ASQVYGY-----------ARR- 307 (520)
Q Consensus 271 ~~~------~~~~~~~a~~aL~~Ls~~dd~~v~-------------------------~~~a~~~-----------a~~- 307 (520)
+.. ++..++++.-.|+||+..=+--+| |+..... .+.
T Consensus 427 q~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~ 506 (717)
T KOG1048|consen 427 QTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT 506 (717)
T ss_pred HHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence 732 337788888899999864321111 1110000 000
Q ss_pred -------HHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-----hhhHHHH-HhcCChHHHHHHHhccCCCCcHHH
Q 010019 308 -------FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-----DEICKSV-AENGGIDALLRCIDDSGLQGNKTV 374 (520)
Q Consensus 308 -------i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-----~e~~~~i-~~~Ggv~~Ll~lL~~~~~~~~~~v 374 (520)
+...-++.+-+.+|....+..+++.++++|-||+.. ...+..+ .+..|.++|+++|+.. + ..|
T Consensus 507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~---~~v 582 (717)
T KOG1048|consen 507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-D---SDV 582 (717)
T ss_pred CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-C---chH
Confidence 111123455566676555677899999999999842 2345555 7888999999999973 2 379
Q ss_pred HHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019 375 ARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD----DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ 450 (520)
Q Consensus 375 ~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~----~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~ 450 (520)
+..++++|+||+.+..||..|. -++++-|++.|..+.. +.+....+|.+|.|+...++++++.+.+.+|++.|+.
T Consensus 583 v~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~ 661 (717)
T KOG1048|consen 583 VRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRL 661 (717)
T ss_pred HHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHH
Confidence 9999999999999999999998 4899999999976543 3678899999999999999999999999999999997
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019 451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI 492 (520)
Q Consensus 451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL 492 (520)
+.+. +.++++.+.|+..+..| +...|.+..+-..|.-...
T Consensus 662 I~~s-~~S~k~~kaAs~vL~~l-W~y~eLh~~~kk~g~~q~~ 701 (717)
T KOG1048|consen 662 ISKS-QHSPKEFKAASSVLDVL-WQYKELHFKLKKKGFKQQD 701 (717)
T ss_pred Hhcc-cCCHHHHHHHHHHHHHH-HHHHHHhhhHhhhhhHHHH
Confidence 7665 67889999999999999 7789999998888886443
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.62 E-value=7.9e-14 Score=140.33 Aligned_cols=324 Identities=14% Similarity=0.084 Sum_probs=238.1
Q ss_pred HHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHHHHHHHhcCCC-----ChHHHHHH
Q 010019 166 AAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNE-----DPEILNSG 239 (520)
Q Consensus 166 r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~-----~~~v~~~a 239 (520)
+...+.+|++..|.+..+|. +.++..++..+|++++.++ ++|..|.+.||-+.++++|+.... +.+....+
T Consensus 80 ~~~~I~a~~le~Lrq~psS~---d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~ 156 (604)
T KOG4500|consen 80 RNYCIDAEALELLRQTPSSP---DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVA 156 (604)
T ss_pred HHHhhHHHHHHHHHhCCCCC---cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHH
Confidence 33345566777777766663 6677777788888887665 669999999999999999987542 34677788
Q ss_pred HHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCC-CcchhhhhhchHHHHHHHcCCHHH
Q 010019 240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPD-DDQVVASQVYGYARRFAKIGIARA 316 (520)
Q Consensus 240 ~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~aL~~Ls~~d-d~~v~~~~a~~~a~~i~~~g~l~~ 316 (520)
+..|.|...+++..+...++.|+++.|...+.-+.. +.........++|..-- ++-.+ ..........
T Consensus 157 ~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~---------~~~d~sl~~~ 227 (604)
T KOG4500|consen 157 FGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYP---------FCKDCSLVFM 227 (604)
T ss_pred HHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhh---------hhccchHHHH
Confidence 999999988999999999999999999988876532 22222222222322110 00011 1223455677
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC----cHHHHHHHHHHHHHhhCCCchH
Q 010019 317 LVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG----NKTVARICCSLLSKLAGSDSNK 392 (520)
Q Consensus 317 Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~----~~~v~~~al~aL~~La~~~~~k 392 (520)
|++++.+...+++-+..+..|...+.+++.|-.+++.|-+..++++++...+.. ...+...++....-|...|+.-
T Consensus 228 l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM 307 (604)
T KOG4500|consen 228 LLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM 307 (604)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH
Confidence 888888766666666677788899999999999999999999999998743221 1345566777777777777777
Q ss_pred HHHHhcC-CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh-C--CCCHHHHHHHHHH
Q 010019 393 SAIIENG-GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK-F--PNAQQLQRSSCFM 468 (520)
Q Consensus 393 ~~Iv~~g-~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~-~--~~~~~vqk~A~~a 468 (520)
+.+..-+ .+..+++-++ +++...+-.+.-+|.|++ |+++++..+++.|.+..++..+.. | .++..+|..++.|
T Consensus 308 q~L~~~p~~l~~~~sw~~--S~d~~l~t~g~LaigNfa-R~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 308 QKLHADPQFLDFLESWFR--SDDSNLITMGSLAIGNFA-RRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred HHHhcCcHHHHHHHHHhc--CCchhHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 7776655 5677777777 788899999999999999 577999999999999999998755 3 3577889999999
Q ss_pred HHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHH
Q 010019 469 IRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDA 505 (520)
Q Consensus 469 L~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~ 505 (520)
|||++ --..++..|...|+...+..-++.| |.....
T Consensus 385 LRnl~-IPv~nka~~~~aGvteaIL~~lk~~~ppv~fk 421 (604)
T KOG4500|consen 385 LRNLM-IPVSNKAHFAPAGVTEAILLQLKLASPPVTFK 421 (604)
T ss_pred HHhcc-ccCCchhhccccchHHHHHHHHHhcCCcchHH
Confidence 99995 4567889999999987776666666 455443
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.45 E-value=1.3e-11 Score=121.28 Aligned_cols=198 Identities=14% Similarity=0.151 Sum_probs=167.1
Q ss_pred hHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 010019 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291 (520)
Q Consensus 212 ~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 291 (520)
.+.+.+.++.|+.+|+. +.++.+++.++.++++.+. .+.+++.+.+.|+++.+..+|..++..+...|.++|.||+.+
T Consensus 7 ~~l~~~~l~~Ll~lL~~-t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 7 NILEAQELQKLLCLLES-TEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred CCcCHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 34566778899999985 4679999999999999864 678999999999999999999998778888899999999998
Q ss_pred CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC
Q 010019 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG 370 (520)
Q Consensus 292 dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~ 370 (520)
.+++. .| + -.++.+++.+.+++ +..++..+..+|.+|++.+++...+. +.++.++.+|..+.
T Consensus 85 ~en~~----------~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~--- 147 (254)
T PF04826_consen 85 DENQE----------QI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGS--- 147 (254)
T ss_pred hhhHH----------HH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCC---
Confidence 87643 33 2 25888888777765 67889999999999999888877765 47999999999742
Q ss_pred cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
..++..++.+|.||+.++++...++.++++..++.++.+. .+.++...++....||..
T Consensus 148 -~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 148 -EKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINE 205 (254)
T ss_pred -hHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999853 367788889999999953
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=2.1e-11 Score=105.15 Aligned_cols=117 Identities=24% Similarity=0.390 Sum_probs=105.9
Q ss_pred HHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010019 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITV 427 (520)
Q Consensus 349 ~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~n 427 (520)
.+++.|+++.++++|.+. +..+...++.+|++++.. ++.+..+++.|+++.++++|. .+++.+++.++++|++
T Consensus 2 ~~~~~~~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~ 75 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRN 75 (120)
T ss_pred hHHHcCChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 467899999999999863 248999999999999976 888999999999999999998 5689999999999999
Q ss_pred HhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 428 LSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 428 La~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
|+...+.....+...|+++.+++.|.. .+..+++.|+|+|.||+
T Consensus 76 l~~~~~~~~~~~~~~g~l~~l~~~l~~--~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 76 LAAGPEDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLA 119 (120)
T ss_pred HccCcHHHHHHHHHCCChHHHHHHHhc--CCHHHHHHHHHHHHHhh
Confidence 999888888889999999999999965 57899999999999986
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.33 E-value=1.4e-10 Score=113.99 Aligned_cols=197 Identities=15% Similarity=0.080 Sum_probs=159.3
Q ss_pred HHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHH
Q 010019 257 YMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI 335 (520)
Q Consensus 257 i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~ 335 (520)
+++.+-++.|+.+|+...+ .+++.+..++.+.+....++- .|.+.||++.+..+|.. +++.++..|++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~----------~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~ 76 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQD----------IIRDLGGISLIGSLLND-PNPSVREKALN 76 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHH----------HHHHcCCHHHHHHHcCC-CChHHHHHHHH
Confidence 3566778999999997654 666778999999876443221 44488999999999987 56889999999
Q ss_pred HHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCH
Q 010019 336 ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA 415 (520)
Q Consensus 336 aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~ 415 (520)
+|.||+.+.+|...|-. .++.+.+.+..++- +..++..++++|.+|+..++....+. +.++.++.+|. +++.
T Consensus 77 aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~l--ns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~--~G~~ 148 (254)
T PF04826_consen 77 ALNNLSVNDENQEQIKM--YIPQVCEETVSSPL--NSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLS--SGSE 148 (254)
T ss_pred HHHhcCCChhhHHHHHH--HHHHHHHHHhcCCC--CCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHH--cCCh
Confidence 99999999999887754 46666666554432 23899999999999998887777665 47999999999 6788
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 416 ~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
.++.+++.+|.||+. +|++.+.++.+++...++.++... .+.++...+.+...|+..
T Consensus 149 ~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 149 KTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence 999999999999996 999999999999999999888654 456677788899999953
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.27 E-value=1.5e-10 Score=99.80 Aligned_cols=116 Identities=23% Similarity=0.351 Sum_probs=102.4
Q ss_pred HHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010019 307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (520)
Q Consensus 307 ~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L 385 (520)
.+++.|+++.|+++|+.. +..++..++++|++++.+ ++.+..+++.|+++.++.+|.+. +..++..++++|++|
T Consensus 2 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~v~~~a~~~L~~l 76 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE----DEEVVKAALWALRNL 76 (120)
T ss_pred hHHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC----CHHHHHHHHHHHHHH
Confidence 467889999999999865 467899999999999965 88999999999999999999863 358999999999999
Q ss_pred hCCC-chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 386 AGSD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 386 a~~~-~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
+.++ ..+..+.+.|+++.++++|. ..+..+++.++++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~--~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLD--SSNEDIQKNATGALSNLA 119 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHh--cCCHHHHHHHHHHHHHhh
Confidence 9765 56667788999999999998 558999999999999997
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.25 E-value=1.6e-08 Score=109.62 Aligned_cols=340 Identities=12% Similarity=0.090 Sum_probs=236.1
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
.....|...+.+ .++....-++..|++.... +......+.+.+.++.++.++... +..+...|.++|.
T Consensus 77 ~~~~~L~~gL~h-------~~~~Vr~l~l~~l~~~~~~--~~~~~~~~~~~~l~~~i~~~L~~~---d~~Va~~A~~~L~ 144 (503)
T PF10508_consen 77 QYQPFLQRGLTH-------PSPKVRRLALKQLGRIARH--SEGAAQLLVDNELLPLIIQCLRDP---DLSVAKAAIKALK 144 (503)
T ss_pred HHHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcC--CHHHHHHhcCccHHHHHHHHHcCC---cHHHHHHHHHHHH
Confidence 445666777766 6677777788889888875 666677888999999999999874 7788888999999
Q ss_pred HhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (520)
Q Consensus 202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a 281 (520)
.++........++..++++.|..++.. .+..+...++.++.+++..+++....+.+.|.++.++..|.+.+.-++.++
T Consensus 145 ~l~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlna 222 (503)
T PF10508_consen 145 KLASHPEGLEQLFDSNLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNA 222 (503)
T ss_pred HHhCCchhHHHHhCcchHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHH
Confidence 888655545567788888999999874 245677788899999999999999999999999999999998433566689
Q ss_pred HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-Ch---hH-HHHHHHHHHHhccChhhHHHHHhcCCh
Q 010019 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SS---PS-LISASIALKAVAVNDEICKSVAENGGI 356 (520)
Q Consensus 282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~---~~-~~~a~~aL~~La~~~e~~~~i~~~Ggv 356 (520)
+..|..|+..+.. .+-+.+.|+++.|++.+.... |+ .+ +........+++..... .+. ++.
T Consensus 223 lell~~La~~~~g----------~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~--~~~ 288 (503)
T PF10508_consen 223 LELLSELAETPHG----------LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVL--ELY 288 (503)
T ss_pred HHHHHHHHcChhH----------HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHH--HHH
Confidence 9999999974432 346778999999999998654 33 11 12233455667653211 121 344
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHH-HhcC-CHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCC
Q 010019 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI-IENG-GMDKLIVVSARF--SDDASVLQEVMSIITVLSLRS 432 (520)
Q Consensus 357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I-v~~g-~l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~ 432 (520)
|.++..+.+..+..++.....|+.+|+.++.+.+++..+ ...| .++.++.....+ +...+++..++.+|.++-...
T Consensus 289 p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 289 PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG 368 (503)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 666655544333345688899999999999999999988 5443 455555555433 345689999999999993221
Q ss_pred H----HH----HHHHHh-cC--cHH-HHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC-CHHHHH
Q 010019 433 P----EN----AARAME-AG--SGD-LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN-GVEKLI 492 (520)
Q Consensus 433 ~----~~----~~~i~~-~G--~i~-~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~-G~~~lL 492 (520)
+ +. ...+.+ .| -.. .++.+++. .=++++..|-..|..++.+ +-....|... |....|
T Consensus 369 ~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q--PF~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gfie~l 438 (503)
T PF10508_consen 369 TDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ--PFPELRCAAYRLLQALAAQ-PWGQREICSSPGFIEYL 438 (503)
T ss_pred CCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchHHHHHHHHHHHHHhcC-HHHHHHHHhCccHHhhh
Confidence 1 11 222222 12 233 44444432 2267888888888888765 4444445554 666655
No 24
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.22 E-value=7.4e-09 Score=108.30 Aligned_cols=320 Identities=17% Similarity=0.171 Sum_probs=221.7
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchh-HHhc-----CCcHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET-FRTG-----GGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~-i~~~-----ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~ 246 (520)
..+..++.+|+.. ...++....|.-+.-++.+.+++.. |.+. .-..+++++|.+ ++.-++..++..|+.+
T Consensus 53 ~y~~~~l~ll~~~--~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~--~d~~i~~~a~~iLt~l 128 (429)
T cd00256 53 QYVKTFVNLLSQI--DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR--QDQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC--CchhHHHHHHHHHHHH
Confidence 4566778888764 3556777788888888777655433 3332 345678888863 4667888888888887
Q ss_pred hcCChhhHHHHHhcCCHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC
Q 010019 247 ATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL 325 (520)
Q Consensus 247 ~~~~e~nr~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~ 325 (520)
......+.......-....|...|++.. ...+.-+...|..|...+..|. .+.+.+++++|+.+|+...
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~----------~f~~~~~v~~L~~~L~~~~ 198 (429)
T cd00256 129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF----------AFVLADGVPTLVKLLSNAT 198 (429)
T ss_pred HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH----------HHHHccCHHHHHHHHhhcc
Confidence 5432221111000012335556666543 3666667788999998887665 6678889999999998755
Q ss_pred -ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC-------chHHHHHh
Q 010019 326 -SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-------SNKSAIIE 397 (520)
Q Consensus 326 -~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~-------~~k~~Iv~ 397 (520)
+...+-.++.++|-|+.+++......+.+.|+.++++++....+ ++++-++.+|+||...+ .....+++
T Consensus 199 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KE---KvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~ 275 (429)
T cd00256 199 LGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKE---KVIRIVLAIFRNLISKRVDREVKKTAALQMVQ 275 (429)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhH---HHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence 45677889999999999888888888889999999999987554 89999999999998632 34456777
Q ss_pred cCCHHHHHHHHhccCCCHHHHHHHHHHHHHH-------hc-------------------CC----HHHHHHHHhcCc--H
Q 010019 398 NGGMDKLIVVSARFSDDASVLQEVMSIITVL-------SL-------------------RS----PENAARAMEAGS--G 445 (520)
Q Consensus 398 ~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL-------a~-------------------~~----~~~~~~i~~~G~--i 445 (520)
.|.++.+-.+..++-.++++.+.--..--.| +. ++ .+|...+-+.+. +
T Consensus 276 ~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~ll 355 (429)
T cd00256 276 CKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELL 355 (429)
T ss_pred cChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHH
Confidence 7766656556665556777655432222111 10 11 157777766653 6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHHH
Q 010019 446 DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRD 512 (520)
Q Consensus 446 ~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~ 512 (520)
..|+++|.. ++++.+..-||--|..++...|+-+..+-+.|+-..++++| .|+ ..++.+.||.-
T Consensus 356 k~L~~iL~~-s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm-~h~-d~~Vr~eAL~a 419 (429)
T cd00256 356 KILIHLLET-SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL-NHE-DPNVRYEALLA 419 (429)
T ss_pred HHHHHHHhc-CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHh-cCC-CHHHHHHHHHH
Confidence 778888854 46788888999999999888899888888899999998888 564 44555555543
No 25
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.19 E-value=8.8e-10 Score=112.46 Aligned_cols=230 Identities=17% Similarity=0.130 Sum_probs=161.7
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc-------CCcHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG-------GGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~-------ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~ 246 (520)
....++.+|+.. ..+.++....+..+.-++.+.+.+..++.. .-..++++++.+ ++.-++..++..+..+
T Consensus 56 ~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~--~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 56 YASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR--NDSFIQLKAAFILTSL 132 (312)
T ss_dssp ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 366777888765 236678888999999988877665555432 135677886653 4788999999999998
Q ss_pred hcCChhhHHHHHhcCCHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019 247 ATGNEVVKESYMELKIDELILEILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH 322 (520)
Q Consensus 247 ~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~ 322 (520)
+...+....... .+.++.++..|++... +.+..+..+|.+|...+..|. .+.+.|+++.|+.+|+
T Consensus 133 l~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~----------~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 133 LSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ----------VFWKSNGVSPLFDILR 201 (312)
T ss_dssp HTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH----------HHHTHHHHHHHHHHHH
T ss_pred HHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH----------HHHhcCcHHHHHHHHH
Confidence 765544333222 5678899999987422 556778999999998776554 6668899999999992
Q ss_pred -----cCC-ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc--hHHH
Q 010019 323 -----AGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSA 394 (520)
Q Consensus 323 -----~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~ 394 (520)
.++ +..++-.++.++|-|+.+++....+.+.+.|+.|+++++....+ +|++-++++|+||...+. +...
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KE---KvvRv~la~l~Nl~~~~~~~~~~~ 278 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKE---KVVRVSLAILRNLLSKAPKSNIEL 278 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SH---HHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccc---hHHHHHHHHHHHHHhccHHHHHHH
Confidence 222 35677889999999999999999999999999999999986543 899999999999997665 8899
Q ss_pred HHhcCCHHHHHHHHhccCCCHHHHHH
Q 010019 395 IIENGGMDKLIVVSARFSDDASVLQE 420 (520)
Q Consensus 395 Iv~~g~l~~Lv~lL~~~~~~~~v~~~ 420 (520)
++..|+++.+-.+..++-+++++.+.
T Consensus 279 mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 279 MVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 99988888777777776678887664
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.13 E-value=1.7e-07 Score=101.75 Aligned_cols=348 Identities=11% Similarity=0.099 Sum_probs=236.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc-chhHHhcCCc
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP 219 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~-~~~i~~~ggi 219 (520)
.+.+.+..+.+.|..+.+. ...... ..+..+.|...|.+. ++.++..+++.|..+..+... .+.+.+.+.+
T Consensus 50 ~~~e~v~~~~~iL~~~l~~---~~~~~l--~~~~~~~L~~gL~h~---~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 50 SNREQVELICDILKRLLSA---LSPDSL--LPQYQPFLQRGLTHP---SPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred cChHHHHHHHHHHHHHHhc---cCHHHH--HHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 4566777777778777764 222222 456778888888874 778888888888887655433 3344567889
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhh
Q 010019 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS 299 (520)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~ 299 (520)
+.++.+|. .++.++...|..+|..++. ++...+.+...+.+..|..++...++.++-.++.++..++...+
T Consensus 122 ~~i~~~L~--~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~------ 192 (503)
T PF10508_consen 122 PLIIQCLR--DPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP------ 192 (503)
T ss_pred HHHHHHHc--CCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH------
Confidence 99999996 4678999999999999986 45566778788889999999987555556668888888875432
Q ss_pred hhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC-cHHHH-HH
Q 010019 300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG-NKTVA-RI 377 (520)
Q Consensus 300 ~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~-~~~v~-~~ 377 (520)
+....+.+.|.++.++..|.+ .|.-++.+++..|..|+..+...+.+.+.|+++.|.+++....+++ -..+. -.
T Consensus 193 ---~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g 268 (503)
T PF10508_consen 193 ---EAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPG 268 (503)
T ss_pred ---HHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhh
Confidence 334456678999999999987 5666778999999999999999999999999999999998754332 12333 34
Q ss_pred HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCCHHHHHHH-HhcC-cHHHHHHHHH
Q 010019 378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPENAARA-MEAG-SGDLAIQAML 453 (520)
Q Consensus 378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~~~~~~~i-~~~G-~i~~lv~~L~ 453 (520)
.+...++++..+.. .+. +..|.++..|... +.++..+..|.-+|..|+. +.+-+..+ ...| ..+.++....
T Consensus 269 ~~~f~g~la~~~~~--~v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~ 343 (503)
T PF10508_consen 269 RMKFFGNLARVSPQ--EVL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIG 343 (503)
T ss_pred HHHHHHHHHhcChH--HHH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHH
Confidence 44777888764221 122 2344444433321 6789999999999999995 66777666 3333 3445554443
Q ss_pred hC--CCCHHHHHHHHHHHHHHhhhChh----h----HHHHHhC---CHHH-HHHHHHHh-CcchHHHHHHHHHHcC
Q 010019 454 KF--PNAQQLQRSSCFMIRNLVARNPE----N----RKLLLSN---GVEK-LIRQAKEN-HEICKDAATDALRDLG 514 (520)
Q Consensus 454 ~~--~~~~~vqk~A~~aL~nL~~~~~e----~----~~~l~~~---G~~~-lL~~~~~~-h~~~~~~a~aALr~Lg 514 (520)
.+ ++..+++..+--++.++-...++ . ...+-+. +-.. ++....+. +|+.+-.|.+-|+.|.
T Consensus 344 ~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~ 419 (503)
T PF10508_consen 344 DAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALA 419 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 32 24456777888888888432111 1 1222211 2222 44444433 3667777777777664
No 27
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.12 E-value=8.1e-09 Score=105.37 Aligned_cols=242 Identities=13% Similarity=0.077 Sum_probs=166.4
Q ss_pred hhHHhcCC---cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhc------CCHHHHHHHHhcCChHHHHHH
Q 010019 211 ETFRTGGG---PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL------KIDELILEILSRQRNDSIQSL 281 (520)
Q Consensus 211 ~~i~~~gg---i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~------g~i~~Lv~lL~~~~~~~~~~a 281 (520)
..+++..| ...++.+|+.-+.+.++....+..+..++..++...+.|.+. ....+++.++.+.+.-+...+
T Consensus 46 ~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a 125 (312)
T PF03224_consen 46 RELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKA 125 (312)
T ss_dssp ----------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHH
T ss_pred HHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHH
Confidence 34554433 667788887654678999999999999988877666666552 257888888877655666678
Q ss_pred HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhccChhhHHHHHhcCChHH
Q 010019 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAVNDEICKSVAENGGIDA 358 (520)
Q Consensus 282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~---~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~ 358 (520)
+..|..|....+.+.. -...+.++.+++.|++... .+.+.-++.+|.+|...++++..+.+.||++.
T Consensus 126 ~~iLt~Ll~~~~~~~~----------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~ 195 (312)
T PF03224_consen 126 AFILTSLLSQGPKRSE----------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSP 195 (312)
T ss_dssp HHHHHHHHTSTTT--H----------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCcccc----------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHH
Confidence 9999988776544331 1113567889999887432 34557788999999999999999999999999
Q ss_pred HHHHHhc---cCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH-
Q 010019 359 LLRCIDD---SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE- 434 (520)
Q Consensus 359 Ll~lL~~---~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~- 434 (520)
++.+|.. .....+..++-.++.++|.|+.+++....+.+.+.++.|+++++.. ..+.|.+-++++|.||....++
T Consensus 196 l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~-~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 196 LFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS-IKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTT
T ss_pred HHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc-ccchHHHHHHHHHHHHHhccHHH
Confidence 9999921 1122346889999999999999999999999999999999999864 4789999999999999976654
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCCHHHHH
Q 010019 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQR 463 (520)
Q Consensus 435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk 463 (520)
+...++..|+++.+-.+...+-+|+++..
T Consensus 275 ~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 275 NIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp HHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred HHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 88889988888888777766556776643
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=7.5e-08 Score=98.87 Aligned_cols=321 Identities=11% Similarity=0.102 Sum_probs=231.1
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHh
Q 010019 148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILI 227 (520)
Q Consensus 148 ~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~ 227 (520)
-|+.-|-+++. +...-.-..+...|..||..|... +.+++....+-|--+.-=.+++..+.+.|.++.|+++..
T Consensus 282 va~ylLlNlAe---d~~~ElKMrrkniV~mLVKaLdr~---n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 282 VAVYLLLNLAE---DISVELKMRRKNIVAMLVKALDRS---NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHhh---hhhHHHHHHHHhHHHHHHHHHccc---chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 34455555554 333344456678889999999874 555554333333222211123567777889999999985
Q ss_pred cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHH
Q 010019 228 DGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARR 307 (520)
Q Consensus 228 ~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~ 307 (520)
.+.+++....+..+.|+.-+ ..+|..++..|.+|.|+.+|.+.. -..-|...|..|+.+|+.+. .
T Consensus 356 --~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~----------M 420 (791)
T KOG1222|consen 356 --IQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKA----------M 420 (791)
T ss_pred --CCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHH----------H
Confidence 56789999999999998654 568899999999999999998753 23446778889999887654 5
Q ss_pred HHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC
Q 010019 308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG 387 (520)
Q Consensus 308 i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~ 387 (520)
++-..+|+.++..+-.+++.++-.+....--||+.+..|.+.+++-.|++.|++.--.+.+ + --..+++|++.
T Consensus 421 fayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D---~----lLmK~vRniSq 493 (791)
T KOG1222|consen 421 FAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRD---L----LLMKVVRNISQ 493 (791)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccc---h----HHHHHHHHhhh
Confidence 5566889999988887776554444433335899999999999998899888775433322 1 24567899998
Q ss_pred CCc-hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHH
Q 010019 388 SDS-NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSC 466 (520)
Q Consensus 388 ~~~-~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~ 466 (520)
++. -+..+++ .+.-|...+.. .+++...-+|+++|+||...+-+..+.+.+...+|.+-..|+-+.....++-+..
T Consensus 494 Heg~tqn~Fid--yvgdLa~i~~n-d~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~v 570 (791)
T KOG1222|consen 494 HEGATQNMFID--YVGDLAGIAKN-DNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIV 570 (791)
T ss_pred ccchHHHHHHH--HHHHHHHHhhc-CchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHH
Confidence 775 3444553 56677777763 3466778889999999999888888888899999999999987777777777877
Q ss_pred HHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019 467 FMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE 500 (520)
Q Consensus 467 ~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~ 500 (520)
.++..+ ++.......+...|+.+.+.+++....
T Consensus 571 i~~GT~-a~d~~cA~Lla~a~~i~tlieLL~a~Q 603 (791)
T KOG1222|consen 571 IACGTM-ARDLDCARLLAPAKLIDTLIELLQACQ 603 (791)
T ss_pred HHhhhh-hhhhHHHHHhCccccHHHHHHHHHhhc
Confidence 778777 555565666667788888888776553
No 29
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.8e-07 Score=100.21 Aligned_cols=260 Identities=13% Similarity=0.108 Sum_probs=191.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHH-HhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhh
Q 010019 221 LLVNILIDGNEDPEILNSGFAVVAA-SATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVA 298 (520)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~-~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~ 298 (520)
.|+.-|...+ ++..|..++.-+.. +...+|+.-..|.-.-.+|.|+.+|+...+ +++..||++|.+||..--...
T Consensus 171 kLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~-- 247 (1051)
T KOG0168|consen 171 KLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS-- 247 (1051)
T ss_pred HHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh--
Confidence 3333344333 45555455444433 334566666666666689999999997655 888899999999995321111
Q ss_pred hhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019 299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (520)
Q Consensus 299 ~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a 378 (520)
-..++.++||.|++-|..-.--++.+.++.||-.++..+ -+.+.++|++...+..|.-++ ..+++.|
T Consensus 248 -------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFS----i~aQR~A 314 (1051)
T KOG0168|consen 248 -------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFS----IHAQRVA 314 (1051)
T ss_pred -------heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHH----HHHHHHH
Confidence 145588999999999886544567888999999998543 347899999999988887543 2689999
Q ss_pred HHHHHHhhC--CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc---CCHHHHHHHHhcCcHHHHHHHHH
Q 010019 379 CSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQAML 453 (520)
Q Consensus 379 l~aL~~La~--~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~---~~~~~~~~i~~~G~i~~lv~~L~ 453 (520)
+.+..|++. .++--.-|++ ++|.|..+|. ..+....|.+|-+++.++. ..|+.-+++...|.+..+.+++.
T Consensus 315 laiaaN~Cksi~sd~f~~v~e--alPlL~~lLs--~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 315 LAIAANCCKSIRSDEFHFVME--ALPLLTPLLS--YQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHHHHhcCCCccchHHHH--HHHHHHHHHh--hccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 999999984 3444445554 7999999998 4477788999999998864 57888899999999999999986
Q ss_pred hCCC--CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019 454 KFPN--AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE 500 (520)
Q Consensus 454 ~~~~--~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~ 500 (520)
..+. +..+.-.-...++-|++++|.....+...++...|..++..+.
T Consensus 391 vt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 391 VTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred cCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence 5432 2233344556777777888999999999999999999987663
No 30
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.85 E-value=2.5e-06 Score=89.49 Aligned_cols=307 Identities=9% Similarity=0.070 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCChhhHHHHHhc-----CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc
Q 010019 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-----GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216 (520)
Q Consensus 142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~-----Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ 216 (520)
..+.+.-.|.-+.+++.. ++..-..+.+. ..+.+++.+|.+. |.-+...+...|+.+......+ ...
T Consensus 67 ~~d~vqyvL~Li~dll~~--~~~~~~~f~~~~~~~~~~~~~fl~lL~~~---d~~i~~~a~~iLt~l~~~~~~~---~~~ 138 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQE--DDTRVKLFHDDALLKKKTWEPFFNLLNRQ---DQFIVHMSFSILAKLACFGLAK---MEG 138 (429)
T ss_pred cHHHHHHHHHHHHHHHHh--chHHHHHHHHHhhccccchHHHHHHHcCC---chhHHHHHHHHHHHHHhcCccc---cch
Confidence 345556666666777764 55544455543 5677788888753 5566777777777765332110 011
Q ss_pred CCcH----HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh--HHHHHHHHHHHHhcC
Q 010019 217 GGPK----LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLT 290 (520)
Q Consensus 217 ggi~----~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~aL~~Ls~ 290 (520)
...+ -+...|++. .+...+..|+.++..+.. .+..|..|.+.+++++|+.+|+.... ..+=.++-+++-|++
T Consensus 139 ~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF 216 (429)
T cd00256 139 SDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF 216 (429)
T ss_pred hHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 1222 333444432 345666677788888754 57799999999999999999987542 455558888898988
Q ss_pred CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-------hhhHHHHHhcCChHHHHHHH
Q 010019 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-------DEICKSVAENGGIDALLRCI 363 (520)
Q Consensus 291 ~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-------~e~~~~i~~~Ggv~~Ll~lL 363 (520)
.++. +..+.+.+.|+.|+++++..+...+.+-++.+|.||... ...+..+++.|..+ ++..|
T Consensus 217 ~~~~----------~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L 285 (429)
T cd00256 217 NPHA----------AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSL 285 (429)
T ss_pred cHHH----------HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHH
Confidence 7642 124446789999999999876556778888899999853 23456777777655 44555
Q ss_pred hc-cCCCCcHHHHHHHHHH-------HHHhhCCCc------------------------hHHHHHhcC--CHHHHHHHHh
Q 010019 364 DD-SGLQGNKTVARICCSL-------LSKLAGSDS------------------------NKSAIIENG--GMDKLIVVSA 409 (520)
Q Consensus 364 ~~-~~~~~~~~v~~~al~a-------L~~La~~~~------------------------~k~~Iv~~g--~l~~Lv~lL~ 409 (520)
.. .-. |.++.+..-.+ +..|++.|+ |...+-+.+ .+..|+++|.
T Consensus 286 ~~rk~~--DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~ 363 (429)
T cd00256 286 EQRKYD--DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLE 363 (429)
T ss_pred hcCCCC--cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 43 211 22443322211 122222222 222332222 3688899995
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 410 ~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
. ++++.+..-||-=|..++...|.-+..+-+.|+=+.++++|. | .+++|+++|-.++.-|..
T Consensus 364 ~-s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~-h-~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 364 T-SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN-H-EDPNVRYEALLAVQKLMV 425 (429)
T ss_pred c-CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc-C-CCHHHHHHHHHHHHHHHH
Confidence 4 567888888999999999888888888888999888888885 5 589999999999887744
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=3.8e-06 Score=86.64 Aligned_cols=328 Identities=11% Similarity=0.049 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcH
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~ 220 (520)
++.+...-...-|.+++- -.+|+....+.|.|..|+.+.... ++++....+..+-++.-|...++.++..|-+|
T Consensus 316 ~n~~Ll~lv~~FLkKLSI---f~eNK~~M~~~~iveKL~klfp~~---h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP 389 (791)
T KOG1222|consen 316 SNSSLLTLVIKFLKKLSI---FDENKIVMEQNGIVEKLLKLFPIQ---HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLP 389 (791)
T ss_pred cchHHHHHHHHHHHHhhh---hccchHHHHhccHHHHHHHhcCCC---CHHHHHHHHHHhhhccccccccHHHhhccchH
Confidence 344444444444555544 467889999999999999998774 77888888888888887777799999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcch--h
Q 010019 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQV--V 297 (520)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v--~ 297 (520)
.+..+|.+... -..|+..+..+. .++..|..|....+|+.+++.+-++.+ ++-......--|||.+.-+.- .
T Consensus 390 ~l~~ll~~d~~----~~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvc 464 (791)
T KOG1222|consen 390 HLASLLDSDTK----HGIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVC 464 (791)
T ss_pred HHHHHhCCccc----chhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEe
Confidence 99999975321 124666777764 467788999999999999988776644 222222222245665443211 0
Q ss_pred hhhhc----------------hHHHHHHHc---------CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh-hHHHHH
Q 010019 298 ASQVY----------------GYARRFAKI---------GIARALVHSLHAGLSSPSLISASIALKAVAVNDE-ICKSVA 351 (520)
Q Consensus 298 ~~~a~----------------~~a~~i~~~---------g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e-~~~~i~ 351 (520)
-|+.- .-.|.|-+. ..+..|...++...+.+...++.++|++|...+- ..+.+-
T Consensus 465 eGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq 544 (791)
T KOG1222|consen 465 EGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQ 544 (791)
T ss_pred cCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHh
Confidence 01100 001111111 1345555555543334555678889999987554 344444
Q ss_pred hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010019 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431 (520)
Q Consensus 352 ~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~ 431 (520)
+..-||-+-..|..+.++. +++-...-+++.+|...+....+..+|.++.++++|+....+.+.+-+..-+...+..
T Consensus 545 ~~~LvPw~k~~L~pga~ed--dLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~- 621 (791)
T KOG1222|consen 545 SENLVPWMKTQLQPGADED--DLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLK- 621 (791)
T ss_pred hccccHHHHHhhcCCccch--hhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHH-
Confidence 5567777777776554443 6888888888888988888888899999999999999776666666666666666654
Q ss_pred CHHHHHHHHh-cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019 432 SPENAARAME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL 484 (520)
Q Consensus 432 ~~~~~~~i~~-~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~ 484 (520)
+...+..++. ......++.+| |..+.++.+-+--+|--++..+.|-.+.+.
T Consensus 622 He~tr~~miket~~~AylIDLM--HDkN~eiRkVCDn~LdIiae~d~EWAKrI~ 673 (791)
T KOG1222|consen 622 HELTRRLMIKETALGAYLIDLM--HDKNAEIRKVCDNALDIIAEHDKEWAKRIA 673 (791)
T ss_pred HHHHHHHHHhhccchHHHHHHH--hcccHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3444444444 44567888999 767888877777788878767777665554
No 32
>PRK09687 putative lyase; Provisional
Probab=98.80 E-value=1.3e-06 Score=87.50 Aligned_cols=254 Identities=13% Similarity=0.037 Sum_probs=172.3
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l 203 (520)
++.|...+.. .|......++..|+.+-. ..+++.+..++.+. ++.+...+.++|+.+
T Consensus 25 ~~~L~~~L~d-------~d~~vR~~A~~aL~~~~~-------------~~~~~~l~~ll~~~---d~~vR~~A~~aLg~l 81 (280)
T PRK09687 25 DDELFRLLDD-------HNSLKRISSIRVLQLRGG-------------QDVFRLAIELCSSK---NPIERDIGADILSQL 81 (280)
T ss_pred HHHHHHHHhC-------CCHHHHHHHHHHHHhcCc-------------chHHHHHHHHHhCC---CHHHHHHHHHHHHhc
Confidence 5566666665 566666677777765322 23667788888764 778888888888876
Q ss_pred hcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHH
Q 010019 204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD 283 (520)
Q Consensus 204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 283 (520)
-..... ....++.|..++. ...++.+...++.+|++++.... .. ...+++.+...+...+..++..+++
T Consensus 82 g~~~~~-----~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~~~-~~----~~~a~~~l~~~~~D~~~~VR~~a~~ 150 (280)
T PRK09687 82 GMAKRC-----QDNVFNILNNLAL-EDKSACVRASAINATGHRCKKNP-LY----SPKIVEQSQITAFDKSTNVRFAVAF 150 (280)
T ss_pred CCCccc-----hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccccc-cc----chHHHHHHHHHhhCCCHHHHHHHHH
Confidence 432110 1123466666643 24568899999999998864322 11 1123455666666555577778888
Q ss_pred HHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHH
Q 010019 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI 363 (520)
Q Consensus 284 aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL 363 (520)
+|..+.. ..+++.|+.+|+. ++..+...++.+|+.+...+. ..++.|+.+|
T Consensus 151 aLg~~~~--------------------~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L 201 (280)
T PRK09687 151 ALSVIND--------------------EAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP--------DIREAFVAML 201 (280)
T ss_pred HHhccCC--------------------HHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHh
Confidence 8865531 1258999999985 467788899999999842211 3456788888
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019 364 DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (520)
Q Consensus 364 ~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G 443 (520)
.+. +..|...|..+|+.+-. ..++|.|++.|+ .++ +...++.+|.++-. + -
T Consensus 202 ~D~----~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~--~~~--~~~~a~~ALg~ig~--~---------~ 252 (280)
T PRK09687 202 QDK----NEEIRIEAIIGLALRKD----------KRVLSVLIKELK--KGT--VGDLIIEAAGELGD--K---------T 252 (280)
T ss_pred cCC----ChHHHHHHHHHHHccCC----------hhHHHHHHHHHc--CCc--hHHHHHHHHHhcCC--H---------h
Confidence 753 34899999999977532 257999999998 333 66778888887763 2 3
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019 444 SGDLAIQAMLKFPNAQQLQRSSCFMIR 470 (520)
Q Consensus 444 ~i~~lv~~L~~~~~~~~vqk~A~~aL~ 470 (520)
.++.|.+++..++ |..|++.|.++|.
T Consensus 253 a~p~L~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence 6788888887665 8899999998875
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.1e-06 Score=95.63 Aligned_cols=263 Identities=10% Similarity=0.046 Sum_probs=190.6
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+++|-+.+.. ++|+..+++++.+|.++..- -+.+.-..+.-.-.||.|+.+|+... +.++...|..+|+.
T Consensus 168 k~kkLL~gL~~------~~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~--n~DIMl~AcRalty 238 (1051)
T KOG0168|consen 168 KAKKLLQGLQA------ESDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEH--NFDIMLLACRALTY 238 (1051)
T ss_pred HHHHHHHhccc------cCChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccc--cHHHHHHHHHHHHH
Confidence 34555555544 25888899999999887653 13444445555668999999998764 45665555566655
Q ss_pred hhcccc-cchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019 203 LVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (520)
Q Consensus 203 l~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a 281 (520)
++.--+ +...+++.+.||.|++=|.. .+-.++.+.++.+|..+...|. ..+.++|++...+..|.-.+..+++.|
T Consensus 239 l~evlP~S~a~vV~~~aIPvl~~kL~~-IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~A 314 (1051)
T KOG0168|consen 239 LCEVLPRSSAIVVDEHAIPVLLEKLLT-IEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVA 314 (1051)
T ss_pred HHhhccchhheeecccchHHHHHhhhh-hhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 553332 24566788999999886642 3457888999999988876554 577899999999999988777899999
Q ss_pred HHHHHHhcCC---CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc----ChhhHHHHHhcC
Q 010019 282 YDAIRVLLTP---DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV----NDEICKSVAENG 354 (520)
Q Consensus 282 ~~aL~~Ls~~---dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~----~~e~~~~i~~~G 354 (520)
..+..|+|.. |+.. -+++ ++|.|..+|+.. |...++.+|.++.+++. .++--+++...|
T Consensus 315 laiaaN~Cksi~sd~f~-----------~v~e--alPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~d 380 (1051)
T KOG0168|consen 315 LAIAANCCKSIRSDEFH-----------FVME--ALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCSHD 380 (1051)
T ss_pred HHHHHHHHhcCCCccch-----------HHHH--HHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhchh
Confidence 9999998863 2221 3555 699999999864 56678899999988872 456678889999
Q ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccC
Q 010019 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 355 gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
-|.....||.-.+..-+..+-....+.|..++. ++.......+.+....|..+|..++
T Consensus 381 Li~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 381 LITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred HHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence 999999988754322223566677788888874 5888888888888888888887554
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.73 E-value=4.5e-06 Score=89.20 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019 372 KTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ 450 (520)
Q Consensus 372 ~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~ 450 (520)
...+.+||-++.+++.+ +.-+...-...++.++|+++. .++..|+..++++|+||...-..-+..+++.||++.+..
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 45666777777777633 223333445578899999995 667889999999999999987788889999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc--chHHHHHHHHHHcCCC
Q 010019 451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE--ICKDAATDALRDLGLD 516 (520)
Q Consensus 451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~aALr~Lg~~ 516 (520)
.+.+ .++.+.+.+-|+||++.-...+-.....-..+..-....+.+.| ..+..+-.-||||-|+
T Consensus 469 ~~~~--~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 469 MLTD--PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcC--CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 8865 46778899999999998665555444333333322222233444 5788899999999997
No 35
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.71 E-value=1.3e-05 Score=81.87 Aligned_cols=318 Identities=18% Similarity=0.172 Sum_probs=215.0
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc-------CCcHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG-------GGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~-------ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~ 246 (520)
.+..++.+++..+ ..+....+|.-+.-++.++..+..+... -.-+..+.+|.++ +.-+...+.+.++.+
T Consensus 66 ~v~~fi~LlS~~~--kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~--d~~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 66 YVKTFINLLSHID--KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQ--DTFIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHhchhh--hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcC--ChHHHHHHHHHHHHH
Confidence 4566777877642 3345556677777666665555444321 1256778888754 455555577777665
Q ss_pred hcCChh--hH-HHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019 247 ATGNEV--VK-ESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH 322 (520)
Q Consensus 247 ~~~~e~--nr-~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~ 322 (520)
+.-... .. +.-.. ...|-.+|++ ++++...-+.+.|..|.+.++.|. .++.++|+..|+..+.
T Consensus 142 a~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~----------~~v~adg~~~l~~~l~ 208 (442)
T KOG2759|consen 142 ACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY----------AFVIADGVSLLIRILA 208 (442)
T ss_pred HHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh----------eeeecCcchhhHHHHh
Confidence 432111 11 11111 2345556666 445777788888999999998887 5777888999999984
Q ss_pred -cCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC-------chHHH
Q 010019 323 -AGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-------SNKSA 394 (520)
Q Consensus 323 -~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~-------~~k~~ 394 (520)
+..+-.++-..+.++|-|+.++..++.+...+.++.|.++++....+ .|.+-++++++|+.... +....
T Consensus 209 s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KE---KV~Rivlai~~Nll~k~~~~~~~k~~~~~ 285 (442)
T KOG2759|consen 209 STKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKE---KVTRIVLAIFRNLLDKGPDRETKKDIASQ 285 (442)
T ss_pred ccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 33345677889999999999999999998888999999999976543 89999999999998544 33355
Q ss_pred HHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH-------hc--------------CCH---------HHHHHHHhcC-
Q 010019 395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVL-------SL--------------RSP---------ENAARAMEAG- 443 (520)
Q Consensus 395 Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL-------a~--------------~~~---------~~~~~i~~~G- 443 (520)
++..+..+.+-.+.++--+++++....--.-..| +. -+| +|+..+-+..
T Consensus 286 mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenny 365 (442)
T KOG2759|consen 286 MVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNY 365 (442)
T ss_pred HHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccH
Confidence 6665555544444444335666544332222111 11 011 4666665554
Q ss_pred -cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC--cchHHHHHHHHHHc
Q 010019 444 -SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH--EICKDAATDALRDL 513 (520)
Q Consensus 444 -~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h--~~~~~~a~aALr~L 513 (520)
.+..|+.+|+. +.+|.+..-||.-|...+...|+-+..+-+.|+-..+..++ +| |+..-.|--|+..|
T Consensus 366 ellkiL~~lLe~-s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll-nh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 366 ELLKILIKLLET-SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL-NHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHHhc-CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh-cCCCchHHHHHHHHHHHH
Confidence 47788888875 46788888999999999988999999999999999998888 66 45667777776655
No 36
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=9.9e-05 Score=80.42 Aligned_cols=342 Identities=13% Similarity=0.119 Sum_probs=233.7
Q ss_pred CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHH
Q 010019 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL 197 (520)
Q Consensus 118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al 197 (520)
+.+.+.|+.|...+.++ .=.+....|++.|..++++ +|..++.. |+++|+..|... -.|++....+|
T Consensus 18 ~s~aETI~kLcDRvess------TL~eDRR~A~rgLKa~srk-----YR~~Vga~-Gmk~li~vL~~D-~~D~E~ik~~L 84 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESS------TLLEDRRDAVRGLKAFSRK-----YREEVGAQ-GMKPLIQVLQRD-YMDPEIIKYAL 84 (970)
T ss_pred ccHHhHHHHHHHHHhhc------cchhhHHHHHHHHHHHHHH-----HHHHHHHc-ccHHHHHHHhhc-cCCHHHHHHHH
Confidence 55567888888887763 4477788899999888775 88877655 577888888753 25889999999
Q ss_pred HHHHHhhccc-------ccc----------hhHHh-cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHh-cCChhhHHHHH
Q 010019 198 KTMALLVHDV-------QST----------ETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASA-TGNEVVKESYM 258 (520)
Q Consensus 198 ~~La~l~~~~-------~~~----------~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~-~~~e~nr~~i~ 258 (520)
.++..+.... +++ +.|+. .+-|..|+..+..+ +-.+...++..+.++. ....+.++.++
T Consensus 85 dTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 85 DTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999886332 222 22333 46688888888643 5567777887777754 34566788888
Q ss_pred hcC-CHHHHHHHHhcCChHHHHH-HHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHHHhcCC--Ch-hHHHH
Q 010019 259 ELK-IDELILEILSRQRNDSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL--SS-PSLIS 332 (520)
Q Consensus 259 ~~g-~i~~Lv~lL~~~~~~~~~~-a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~lL~~~~--~~-~~~~~ 332 (520)
... +|..|+.+|+... +.+++ +.-.|..|+.+.. +.++++ =.++.+.|..+++..+ |. -+..+
T Consensus 163 ~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n~----------~IQKlVAFENaFerLfsIIeeEGg~dGgIVveD 231 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDNS----------SIQKLVAFENAFERLFSIIEEEGGLDGGIVVED 231 (970)
T ss_pred HCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccCc----------hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 775 8999999998633 55555 7777788877552 234565 3578999999998744 43 46688
Q ss_pred HHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccC--CC----Cc-HHH--HHHHHHHHHHhhC--CC-----chHHHH
Q 010019 333 ASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSG--LQ----GN-KTV--ARICCSLLSKLAG--SD-----SNKSAI 395 (520)
Q Consensus 333 a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~--~~----~~-~~v--~~~al~aL~~La~--~~-----~~k~~I 395 (520)
+...|-||.. |..|.+.+.+.+-|+.|..+|..+. +. .+ ..+ +..++.+++.|.. +. .+..++
T Consensus 232 CL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l 311 (970)
T KOG0946|consen 232 CLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKAL 311 (970)
T ss_pred HHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 8889999984 5567777888888999998886531 10 01 112 2456777777763 22 233467
Q ss_pred HhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC---------cHHHHHHHHHhCCCCHHHHHHHH
Q 010019 396 IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG---------SGDLAIQAMLKFPNAQQLQRSSC 466 (520)
Q Consensus 396 v~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G---------~i~~lv~~L~~~~~~~~vqk~A~ 466 (520)
...+++..|..++-...-..+|+..+.-++++...++..+...+.+-. .+-.++..|....-.+...-...
T Consensus 312 ~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ 391 (970)
T KOG0946|consen 312 VSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVL 391 (970)
T ss_pred HHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHH
Confidence 888999999998863223578999999999999988888888776532 23344445544333344433444
Q ss_pred HHHHHHhhhChhhHHHHHh
Q 010019 467 FMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 467 ~aL~nL~~~~~e~~~~l~~ 485 (520)
..++.+..+|.+....|+.
T Consensus 392 ycf~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 392 YCFRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHHHhcchhhHHHHHH
Confidence 5666666677776666653
No 37
>PRK09687 putative lyase; Provisional
Probab=98.69 E-value=5.1e-06 Score=83.36 Aligned_cols=251 Identities=10% Similarity=0.041 Sum_probs=168.0
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (520)
.++.|+.+|.+. +..+...+..+|..+-. ....+.+.+++. ++++.+...++++|+.+-. ....
T Consensus 24 ~~~~L~~~L~d~---d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~-~~~~ 87 (280)
T PRK09687 24 NDDELFRLLDDH---NSLKRISSIRVLQLRGG----------QDVFRLAIELCS--SKNPIERDIGADILSQLGM-AKRC 87 (280)
T ss_pred cHHHHHHHHhCC---CHHHHHHHHHHHHhcCc----------chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCC-Cccc
Confidence 467888888764 77777777787776532 113466677665 4578999999999988632 1111
Q ss_pred HHHHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019 254 KESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (520)
Q Consensus 254 r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~ 332 (520)
...+++.|..++... ...++..|+.+|..++....... ..+++.+..++.. .+..+...
T Consensus 88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~--------------~~a~~~l~~~~~D-~~~~VR~~ 147 (280)
T PRK09687 88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS--------------PKIVEQSQITAFD-KSTNVRFA 147 (280)
T ss_pred -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc--------------hHHHHHHHHHhhC-CCHHHHHH
Confidence 123567777775444 44677789999999875432110 1134555555554 35678888
Q ss_pred HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
++++|..+. ...+++.|+.+|.+. +..|...|+.+|+.+...+ ..+++.|+.+|. .
T Consensus 148 a~~aLg~~~----------~~~ai~~L~~~L~d~----~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~--D 203 (280)
T PRK09687 148 VAFALSVIN----------DEAAIPLLINLLKDP----NGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQ--D 203 (280)
T ss_pred HHHHHhccC----------CHHHHHHHHHHhcCC----CHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhc--C
Confidence 999997663 122578999999862 3489999999999883211 145678999997 6
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI 492 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL 492 (520)
.++.|+..|.++|..+- ++ -+++.|++.|.. ++ +...|+.||.++ +++ -+.+.|
T Consensus 204 ~~~~VR~~A~~aLg~~~--~~---------~av~~Li~~L~~--~~--~~~~a~~ALg~i--g~~---------~a~p~L 257 (280)
T PRK09687 204 KNEEIRIEAIIGLALRK--DK---------RVLSVLIKELKK--GT--VGDLIIEAAGEL--GDK---------TLLPVL 257 (280)
T ss_pred CChHHHHHHHHHHHccC--Ch---------hHHHHHHHHHcC--Cc--hHHHHHHHHHhc--CCH---------hHHHHH
Confidence 78999999999999754 22 478899999864 23 667888999888 233 246667
Q ss_pred HHHHHhCc--chHHHHHHHH
Q 010019 493 RQAKENHE--ICKDAATDAL 510 (520)
Q Consensus 493 ~~~~~~h~--~~~~~a~aAL 510 (520)
..++..++ .+...|..||
T Consensus 258 ~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 258 DTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHhhCCChhHHHHHHHHH
Confidence 77776675 2444455554
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.67 E-value=1.7e-05 Score=92.24 Aligned_cols=244 Identities=12% Similarity=0.077 Sum_probs=158.0
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (520)
+++|.|+.+|+. ++..+...|+.+|..+.... ...+.|...|.+ +++.+...++.+|..+-
T Consensus 652 ~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~---------~~~~~L~~~L~~--~d~~VR~~A~~aL~~~~----- 712 (897)
T PRK13800 652 GFGPALVAALGD---GAAAVRRAAAEGLRELVEVL---------PPAPALRDHLGS--PDPVVRAAALDVLRALR----- 712 (897)
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhcc---------CchHHHHHHhcC--CCHHHHHHHHHHHHhhc-----
Confidence 467888888865 36777777777776653211 112456666753 56788878777776532
Q ss_pred hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (520)
Q Consensus 253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~ 332 (520)
.+-...|+..|+..+..+...|+.+|..+- ..+.|..++.. +++.+...
T Consensus 713 -------~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-----------------------~~~~l~~~l~D-~~~~VR~~ 761 (897)
T PRK13800 713 -------AGDAALFAAALGDPDHRVRIEAVRALVSVD-----------------------DVESVAGAATD-ENREVRIA 761 (897)
T ss_pred -------cCCHHHHHHHhcCCCHHHHHHHHHHHhccc-----------------------CcHHHHHHhcC-CCHHHHHH
Confidence 122345677777655577777777776541 12445566654 46788888
Q ss_pred HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
++.+|..+... +.+.++.|+.++.+. ++.|...++.+|+.+...+ ..++.++.+|. .
T Consensus 762 aa~aL~~~~~~--------~~~~~~~L~~ll~D~----d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~--d 818 (897)
T PRK13800 762 VAKGLATLGAG--------GAPAGDAVRALTGDP----DPLVRAAALAALAELGCPP---------DDVAAATAALR--A 818 (897)
T ss_pred HHHHHHHhccc--------cchhHHHHHHHhcCC----CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhc--C
Confidence 99999888532 223367788887752 3589999999998874321 12356788887 6
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI 492 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL 492 (520)
+++.|+..|+.+|..+.. ...++.|+.+|+. .+..|++.|.++|..+ ..++.. .+.|
T Consensus 819 ~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D--~~~~VR~~A~~aL~~~-~~~~~a---------~~~L 875 (897)
T PRK13800 819 SAWQVRQGAARALAGAAA-----------DVAVPALVEALTD--PHLDVRKAAVLALTRW-PGDPAA---------RDAL 875 (897)
T ss_pred CChHHHHHHHHHHHhccc-----------cchHHHHHHHhcC--CCHHHHHHHHHHHhcc-CCCHHH---------HHHH
Confidence 788999999999987753 1245888888854 5789999999999886 233332 4445
Q ss_pred HHHHHh-CcchHHHHHHHHHH
Q 010019 493 RQAKEN-HEICKDAATDALRD 512 (520)
Q Consensus 493 ~~~~~~-h~~~~~~a~aALr~ 512 (520)
..++.. .++.+.+|..||+.
T Consensus 876 ~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 876 TTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhCCCHHHHHHHHHHHhh
Confidence 455432 23455566666653
No 39
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.5e-05 Score=80.38 Aligned_cols=163 Identities=13% Similarity=0.238 Sum_probs=137.6
Q ss_pred ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHH
Q 010019 326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKL 404 (520)
Q Consensus 326 ~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~L 404 (520)
+.+-+..++--|-.++.+-+|-..+...||..+++..+... ++.+.+.|+++|+..+. ||.....+.+.||++.|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~----~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS----DAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 44566777777888887888889999999999999977752 35899999999999984 68888999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019 405 IVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL 484 (520)
Q Consensus 405 v~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~ 484 (520)
+..+. +.++-.++..|+.++++|-..++.-...+...+|...|..+|+....+...|+.+..+|..+..........+-
T Consensus 172 l~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99998 45667888999999999999899999999999999999999998778899999999999999876666666555
Q ss_pred hCCHHHHHH
Q 010019 485 SNGVEKLIR 493 (520)
Q Consensus 485 ~~G~~~lL~ 493 (520)
..|....+.
T Consensus 251 ~~~f~~~~~ 259 (342)
T KOG2160|consen 251 SLGFQRVLE 259 (342)
T ss_pred HhhhhHHHH
Confidence 555554443
No 40
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.9e-05 Score=78.32 Aligned_cols=184 Identities=21% Similarity=0.184 Sum_probs=139.7
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~ 268 (520)
+.+-..-|+..|.-++++-++-.+++..||..+++..|+ +.+.++...|+|+|+.+...++...+.+++.|+.+.|+.
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 445577889999999877776789999999999999886 457899999999999999999999999999999999999
Q ss_pred HHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhh
Q 010019 269 ILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEI 346 (520)
Q Consensus 269 lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~ 346 (520)
.|.+.++ .+...|..++++|-++..+-. ..+...+|...|..+|++.+ +...+.-++..|.+|...+..
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~---------~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQ---------DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHH---------HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 9997654 666778999999988764322 36668899999999999864 456778889999999854433
Q ss_pred HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019 347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (520)
Q Consensus 347 ~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La 386 (520)
...++..-+.+..+..+....+. ++.+.++.++-.+.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~---~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDF---EVNEAALTALLSLL 281 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccch---hhhHHHHHHHHHHH
Confidence 33355544455544444433222 56666666554443
No 41
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00015 Score=79.09 Aligned_cols=282 Identities=16% Similarity=0.191 Sum_probs=197.0
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh------hhH--------
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE------VVK-------- 254 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e------~nr-------- 254 (520)
|+.-++.+|++++- .. ..-+.+.|+++++..|.+...++++...++..+.++.+..+ +.+
T Consensus 39 DRR~A~rgLKa~sr---kY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ 112 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSR---KY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLW 112 (970)
T ss_pred hHHHHHHHHHHHHH---HH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHH
Confidence 44445555555553 32 33456779999999999988999999999999998876442 222
Q ss_pred --HHHH-hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cCCHHHHHHHHhcCCChhHH
Q 010019 255 --ESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHAGLSSPSL 330 (520)
Q Consensus 255 --~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g~l~~Lv~lL~~~~~~~~~ 330 (520)
+.|+ ..+-|..|+..+...+-.+++.+...|.+|....-..+ ...+.. --||..|+.+|+... ..+.
T Consensus 113 iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~--------q~~ll~~P~gIS~lmdlL~Dsr-E~IR 183 (970)
T KOG0946|consen 113 IAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL--------QDALLVSPMGISKLMDLLRDSR-EPIR 183 (970)
T ss_pred HHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH--------HHHHHHCchhHHHHHHHHhhhh-hhhc
Confidence 2445 34678889988887655888889999998876543222 123333 478999999998754 3356
Q ss_pred HHHHHHHHHhccChhhHHHHHh-cCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHH
Q 010019 331 ISASIALKAVAVNDEICKSVAE-NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVS 408 (520)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~~-~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL 408 (520)
-++...|..|..++.+.++++. .++...|..++..-+.....-|+..|+.+|-||-. +-.|...+.+.+-+|.|..+|
T Consensus 184 Ne~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL 263 (970)
T KOG0946|consen 184 NEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLL 263 (970)
T ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhc
Confidence 6778888999976666666664 46778889988763311112688999999999985 567777788878899999988
Q ss_pred hccC-CC-------H-H--HHHHHHHHHHHHhcC-C-----HHHHHHHHhcCcHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 010019 409 ARFS-DD-------A-S--VLQEVMSIITVLSLR-S-----PENAARAMEAGSGDLAIQAMLKFP-NAQQLQRSSCFMIR 470 (520)
Q Consensus 409 ~~~~-~~-------~-~--v~~~a~~aL~nLa~~-~-----~~~~~~i~~~G~i~~lv~~L~~~~-~~~~vqk~A~~aL~ 470 (520)
..+. .+ + . -.-.++.+++.|... + ..+.+.+...+++..|..++. |+ -..+|+..+.-+++
T Consensus 264 ~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~-~~~vp~dIltesiitvA 342 (970)
T KOG0946|consen 264 SVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM-HPGVPADILTESIITVA 342 (970)
T ss_pred CcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc-CCCCcHhHHHHHHHHHH
Confidence 6532 11 1 1 122344455555421 1 134457788889988888774 65 45679999999999
Q ss_pred HHhhhChhhHHHHHhC
Q 010019 471 NLVARNPENRKLLLSN 486 (520)
Q Consensus 471 nL~~~~~e~~~~l~~~ 486 (520)
+++.++..++..|.+-
T Consensus 343 evVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 343 EVVRGNARNQDEFADV 358 (970)
T ss_pred HHHHhchHHHHHHhhc
Confidence 9998899999888863
No 42
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.44 E-value=6.1e-05 Score=87.56 Aligned_cols=246 Identities=15% Similarity=0.082 Sum_probs=159.4
Q ss_pred hcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010019 171 KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN 250 (520)
Q Consensus 171 ~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~ 250 (520)
..+.++.|++.|.+ +++.+...|+.+|+.+.. .+.++.|+..|+ .++..+...++.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D---~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~--D~d~~VR~~Aa~aL~~l~~~~ 683 (897)
T PRK13800 619 DAPSVAELAPYLAD---PDPGVRRTAVAVLTETTP----------PGFGPALVAALG--DGAAAVRRAAAEGLRELVEVL 683 (897)
T ss_pred cchhHHHHHHHhcC---CCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcc
Confidence 45566777787765 377788777777776532 234677888885 456777777777776553111
Q ss_pred hhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHH
Q 010019 251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL 330 (520)
Q Consensus 251 e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~ 330 (520)
...+.|...|.+.+..++..|+.+|..+... -...|+..|+. +|+.+.
T Consensus 684 ----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~---------------------~~~~l~~~L~D-~d~~VR 731 (897)
T PRK13800 684 ----------PPAPALRDHLGSPDPVVRAAALDVLRALRAG---------------------DAALFAAALGD-PDHRVR 731 (897)
T ss_pred ----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC---------------------CHHHHHHHhcC-CCHHHH
Confidence 1235677777765556666677777765421 13456666764 467788
Q ss_pred HHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhc
Q 010019 331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSAR 410 (520)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~ 410 (520)
..++.+|..+- ..+.|+.++.+ +++.|...++.+|..+... ....++.|..+++
T Consensus 732 ~~Av~aL~~~~-------------~~~~l~~~l~D----~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~- 785 (897)
T PRK13800 732 IEAVRALVSVD-------------DVESVAGAATD----ENREVRIAVAKGLATLGAG--------GAPAGDAVRALTG- 785 (897)
T ss_pred HHHHHHHhccc-------------CcHHHHHHhcC----CCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhc-
Confidence 88888888752 22446666654 2468999999999887542 1234788888887
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHH
Q 010019 411 FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEK 490 (520)
Q Consensus 411 ~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~ 490 (520)
.+++.|+..++.+|..+... + .....++.+|+. +++.|.+.|+++|..+. +++ ..+
T Consensus 786 -D~d~~VR~aA~~aLg~~g~~-~---------~~~~~l~~aL~d--~d~~VR~~Aa~aL~~l~--~~~---------a~~ 841 (897)
T PRK13800 786 -DPDPLVRAAALAALAELGCP-P---------DDVAAATAALRA--SAWQVRQGAARALAGAA--ADV---------AVP 841 (897)
T ss_pred -CCCHHHHHHHHHHHHhcCCc-c---------hhHHHHHHHhcC--CChHHHHHHHHHHHhcc--ccc---------hHH
Confidence 66899999999999987531 1 123456777754 57899999999998773 222 224
Q ss_pred HHHHHHH-hCcchHHHHHHHHHHc
Q 010019 491 LIRQAKE-NHEICKDAATDALRDL 513 (520)
Q Consensus 491 lL~~~~~-~h~~~~~~a~aALr~L 513 (520)
.|..++. .++.++..|..||..+
T Consensus 842 ~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 842 ALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcc
Confidence 4444442 2345666677777665
No 43
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.43 E-value=6.5e-05 Score=80.54 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=117.4
Q ss_pred ChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHH
Q 010019 326 SSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDK 403 (520)
Q Consensus 326 ~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~ 403 (520)
|......||..+.+++.. ..-+...-+..|..+|+.++.+. + ..+...++++|.||.. ..+-|..+++.||++.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~---~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-E---IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-c---hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 556667777777777632 22333456777889999999652 2 3788999999999984 4667888999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcH-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG-DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL 482 (520)
Q Consensus 404 Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i-~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~ 482 (520)
+.+++. ..++.++..+.|+|+++..++.+..+........ ..++.+. .. .++.||+++--.+||++....+....
T Consensus 466 l~s~~~--~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~-nd-~d~~Vqeq~fqllRNl~c~~~~svdf 541 (678)
T KOG1293|consen 466 LESMLT--DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI-ND-PDWAVQEQCFQLLRNLTCNSRKSVDF 541 (678)
T ss_pred HHHHhc--CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH-hC-CCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 999998 6688999999999999999887766655444433 3444444 33 58999999999999998877888888
Q ss_pred HHhC
Q 010019 483 LLSN 486 (520)
Q Consensus 483 l~~~ 486 (520)
+++.
T Consensus 542 ll~~ 545 (678)
T KOG1293|consen 542 LLEK 545 (678)
T ss_pred HHHh
Confidence 8765
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.35 E-value=0.00081 Score=73.39 Aligned_cols=370 Identities=15% Similarity=0.189 Sum_probs=219.7
Q ss_pred HHHHHhhcCCChhHHHHHHHHH---HhhcCcccCCc----cccCCCCCC-------------CCC--CcHHHHHHHHHHH
Q 010019 73 VKENMEDLGMEPTEALQDAIQT---LSLQGVDLSGI----VKCVPGESS-------------LKD--NPLIQSLERLKQL 130 (520)
Q Consensus 73 V~eni~~~~m~p~eal~~aI~q---f~~qgvdls~i----~~~~~~~~~-------------~~~--~~~~~~l~~L~~~ 130 (520)
+++-.++|. ...+-.++++.+ +..+|.|.+.. ++-.....- ... ..+.-++..|+.-
T Consensus 9 l~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kd 87 (526)
T PF01602_consen 9 LAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKD 87 (526)
T ss_dssp HHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence 566666776 444455666666 37799998744 222221100 011 1122345566666
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc
Q 010019 131 DLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST 210 (520)
Q Consensus 131 l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~ 210 (520)
+.+ +++....-||+.|..++. ++-.. -.+|.+..++.+. ++-++..|+.++..+....
T Consensus 88 l~~-------~n~~~~~lAL~~l~~i~~----~~~~~-----~l~~~v~~ll~~~---~~~VRk~A~~~l~~i~~~~--- 145 (526)
T PF01602_consen 88 LNS-------PNPYIRGLALRTLSNIRT----PEMAE-----PLIPDVIKLLSDP---SPYVRKKAALALLKIYRKD--- 145 (526)
T ss_dssp HCS-------SSHHHHHHHHHHHHHH-S----HHHHH-----HHHHHHHHHHHSS---SHHHHHHHHHHHHHHHHHC---
T ss_pred hcC-------CCHHHHHHHHhhhhhhcc----cchhh-----HHHHHHHHHhcCC---chHHHHHHHHHHHHHhccC---
Confidence 655 556566666666666553 22111 1467778888764 7788888888888876543
Q ss_pred hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 010019 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (520)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 290 (520)
++.+..+-++.+.++|. ..++.++..|+.++..+ ..++..-..+. ...+..|.+++...++-.+..+.+.|..++.
T Consensus 146 p~~~~~~~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 146 PDLVEDELIPKLKQLLS--DKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp HCCHHGGHHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHHHHHHHHHHHhhhcc--CCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 33332225788888885 34689999999999887 22221100111 1223344444444444555667788887775
Q ss_pred CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC
Q 010019 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG 370 (520)
Q Consensus 291 ~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~ 370 (520)
.+.... -+...++.+..++++. ++.+.-+++.++..+...+. .-..+++.|+.+|.+ +
T Consensus 222 ~~~~~~------------~~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s-~--- 279 (526)
T PF01602_consen 222 MEPEDA------------DKNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS-S--- 279 (526)
T ss_dssp SSHHHH------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS-S---
T ss_pred CChhhh------------hHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc-c---
Confidence 442111 0034678888888853 46788889999998886665 223446789999984 2
Q ss_pred cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ 450 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~ 450 (520)
+..+.-.++..|..++... ...+ . .....+..+. +.+++.++..++..|..++ +++|...++ +.+..
T Consensus 280 ~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~-~~~d~~Ir~~~l~lL~~l~--~~~n~~~Il-----~eL~~ 346 (526)
T PF01602_consen 280 DPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLL-YDDDPSIRKKALDLLYKLA--NESNVKEIL-----DELLK 346 (526)
T ss_dssp SHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHH-CSSSHHHHHHHHHHHHHH----HHHHHHHH-----HHHHH
T ss_pred cchhehhHHHHHHHhhccc--chhh-h--hhhhhhheec-CCCChhHHHHHHHHHhhcc--cccchhhHH-----HHHHH
Confidence 2478999999999998654 2333 3 4445555664 3678999999999999999 567777753 45666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH--------------hCCHHHHHHHHHHhCcchHHH
Q 010019 451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL--------------SNGVEKLIRQAKENHEICKDA 505 (520)
Q Consensus 451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~--------------~~G~~~lL~~~~~~h~~~~~~ 505 (520)
.+.. ..+..+++.+...|+.++...+......+ ...+...+..++..+++.+..
T Consensus 347 ~l~~-~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~ 414 (526)
T PF01602_consen 347 YLSE-LSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK 414 (526)
T ss_dssp HHHH-C--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH
T ss_pred HHHh-ccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH
Confidence 6633 24677999999999999876554333222 123445555555556555443
No 45
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.34 E-value=5.1e-06 Score=72.28 Aligned_cols=148 Identities=17% Similarity=0.105 Sum_probs=115.2
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019 361 RCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM 440 (520)
Q Consensus 361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~ 440 (520)
.+.+.+....+.+..+....-|+|.|-.|.|-..+.+..+++.++..|. ..+..+++.+.+.|+|+|. ++.|++.|.
T Consensus 20 ~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~--e~ne~LvefgIgglCNlC~-d~~n~~~I~ 96 (173)
T KOG4646|consen 20 HLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE--EQNELLVEFGIGGLCNLCL-DKTNAKFIR 96 (173)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh--cccHHHHHHhHHHHHhhcc-ChHHHHHHH
Confidence 3333333334568889999999999999999999999999999999998 6789999999999999997 899999999
Q ss_pred hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019 441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDL 513 (520)
Q Consensus 441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L 513 (520)
+++|++.++..+..+ ...+...|..++..|.-++...++.++.-.+...+.+-.... -+-..-|+++|.+-
T Consensus 97 ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSP--PEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HhcCCceEEeecCCC--hHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999765 345667888899999777788888888766665554443111 12234466666553
No 46
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.34 E-value=3.7e-06 Score=73.15 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=119.3
Q ss_pred HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC
Q 010019 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD 389 (520)
Q Consensus 310 ~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~ 389 (520)
..+.+..||.-.+..++.+.++....-|.|.|-++-|..-+.+..+++..+..|.. +|..+++.+.+.|.|++-.+
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e----~ne~LvefgIgglCNlC~d~ 89 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE----QNELLVEFGIGGLCNLCLDK 89 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc----ccHHHHHHhHHHHHhhccCh
Confidence 44567888888887777788888888899999999999999999999999998876 34489999999999999999
Q ss_pred chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010019 390 SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMI 469 (520)
Q Consensus 390 ~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL 469 (520)
.|+..|++++|+|.++..+. +....+...+..+|..|+..+..-+..+. -+.+++.|..+. ..++.-.
T Consensus 90 ~n~~~I~ea~g~plii~~ls--sp~e~tv~sa~~~l~~l~~~~Rt~r~ell----~p~Vv~~v~r~~------~s~s~~~ 157 (173)
T KOG4646|consen 90 TNAKFIREALGLPLIIFVLS--SPPEITVHSAALFLQLLEFGERTERDELL----SPAVVRTVQRWR------ESKSHDE 157 (173)
T ss_pred HHHHHHHHhcCCceEEeecC--CChHHHHHHHHHHHHHhcCcccchhHHhc----cHHHHHHHHHHH------HHhhHHH
Confidence 99999999999999999998 55677888899999999987766666654 366676665432 2233345
Q ss_pred HHHh
Q 010019 470 RNLV 473 (520)
Q Consensus 470 ~nL~ 473 (520)
+||+
T Consensus 158 rnLa 161 (173)
T KOG4646|consen 158 RNLA 161 (173)
T ss_pred HHHH
Confidence 6664
No 47
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.33 E-value=3.5e-05 Score=79.38 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=130.5
Q ss_pred hHHHHHhcCCHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHH
Q 010019 253 VKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL 330 (520)
Q Consensus 253 nr~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~ 330 (520)
.++.|...|++..|+.++.+... .+...+.++|-.+.... + ...++..| +..++.+-+.....+..
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N----------~d~va~~~-~~~Il~lAK~~e~~e~a 239 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-N----------RDRVARIG-LGVILNLAKEREPVELA 239 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-h----------hhHHhhcc-chhhhhhhhhcCcHHHH
Confidence 35677778999999999998754 45666888887665432 2 22455444 66777776654446788
Q ss_pred HHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCCchHHHHHhcCCHHHHHHH
Q 010019 331 ISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVV 407 (520)
Q Consensus 331 ~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~l 407 (520)
...++.|.+|- ..++.|+++++.||++.++--.+.. ++.++++|.-+|+|++ +..+.+..|++..+.+.|.-+
T Consensus 240 R~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt----~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~L 315 (832)
T KOG3678|consen 240 RSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT----DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPL 315 (832)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC----CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhh
Confidence 88999999998 6788999999999999987766653 3589999999999998 556788889998888888877
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019 408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (520)
Q Consensus 408 L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G 443 (520)
-. +.+.-.+-+||-+.+.|+. +.+.-..+...|
T Consensus 316 A~--skDel~R~~AClAV~vlat-~KE~E~~VrkS~ 348 (832)
T KOG3678|consen 316 AF--SKDELLRLHACLAVAVLAT-NKEVEREVRKSG 348 (832)
T ss_pred hc--chHHHHHHHHHHHHhhhhh-hhhhhHHHhhcc
Confidence 65 6788889999999999985 445444554444
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.28 E-value=0.00018 Score=78.47 Aligned_cols=297 Identities=16% Similarity=0.135 Sum_probs=186.6
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..+...+.+ +++.....|+-.+.++.+. +++ .+... .+|.|..+|.+. ++.+...|+..+..
T Consensus 115 l~~~v~~ll~~-------~~~~VRk~A~~~l~~i~~~--~p~---~~~~~-~~~~l~~lL~d~---~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 115 LIPDVIKLLSD-------PSPYVRKKAALALLKIYRK--DPD---LVEDE-LIPKLKQLLSDK---DPSVVSAALSLLSE 178 (526)
T ss_dssp HHHHHHHHHHS-------SSHHHHHHHHHHHHHHHHH--CHC---CHHGG-HHHHHHHHTTHS---SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CchHHHHHHHHHHHHHhcc--CHH---HHHHH-HHHHHhhhccCC---cchhHHHHHHHHHH
Confidence 34455666665 5666667788888888774 444 22233 689999999764 78888888888888
Q ss_pred h-hcccccchhHHhcCCcHHHHHHHhc--CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHH
Q 010019 203 L-VHDVQSTETFRTGGGPKLLVNILID--GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ 279 (520)
Q Consensus 203 l-~~~~~~~~~i~~~ggi~~Lv~lL~~--~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~ 279 (520)
+ .++ .... ..++.+++.|.+ ...++..+...++.+...+...+..... ...++.+..+|++.+..++-
T Consensus 179 i~~~~-----~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~ 249 (526)
T PF01602_consen 179 IKCND-----DSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVY 249 (526)
T ss_dssp HHCTH-----HHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HccCc-----chhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHH
Confidence 7 222 1111 334555555432 3567899999999998877655444421 45678888888876668888
Q ss_pred HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHH
Q 010019 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDAL 359 (520)
Q Consensus 280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~L 359 (520)
+++.++..+..... .-..++++|+.+|. .++++++--++.+|..++... . ..+. .....
T Consensus 250 e~~~~i~~l~~~~~---------------~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~--~-~~v~--~~~~~ 308 (526)
T PF01602_consen 250 EAIRLIIKLSPSPE---------------LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSN--P-PAVF--NQSLI 308 (526)
T ss_dssp HHHHHHHHHSSSHH---------------HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHC--H-HHHG--THHHH
T ss_pred HHHHHHHHhhcchH---------------HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhccc--c-hhhh--hhhhh
Confidence 88888887775321 11246899999998 456778888889999988543 2 2222 33455
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019 360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439 (520)
Q Consensus 360 l~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i 439 (520)
+..+.... +..+...++.+|..++. ++|...| ++.|...+.. ..++.+++.++.+|..++.+.+......
T Consensus 309 ~~~l~~~~---d~~Ir~~~l~lL~~l~~-~~n~~~I-----l~eL~~~l~~-~~d~~~~~~~i~~I~~la~~~~~~~~~~ 378 (526)
T PF01602_consen 309 LFFLLYDD---DPSIRKKALDLLYKLAN-ESNVKEI-----LDELLKYLSE-LSDPDFRRELIKAIGDLAEKFPPDAEWY 378 (526)
T ss_dssp HHHHHCSS---SHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHH-C--HHHHHHHHHHHHHHHHHHGSSHHHH
T ss_pred hheecCCC---ChhHHHHHHHHHhhccc-ccchhhH-----HHHHHHHHHh-ccchhhhhhHHHHHHHHHhccCchHHHH
Confidence 55666322 35899999999999884 3344443 4566676731 3477899999999999886554333322
Q ss_pred HhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019 440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL 482 (520)
Q Consensus 440 ~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~ 482 (520)
++.+++++.. +...+..++...++++..++++.+..
T Consensus 379 -----v~~l~~ll~~--~~~~~~~~~~~~i~~ll~~~~~~~~~ 414 (526)
T PF01602_consen 379 -----VDTLLKLLEI--SGDYVSNEIINVIRDLLSNNPELREK 414 (526)
T ss_dssp -----HHHHHHHHHC--TGGGCHCHHHHHHHHHHHHSTTTHHH
T ss_pred -----HHHHHHhhhh--ccccccchHHHHHHHHhhcChhhhHH
Confidence 3445555543 12333445555555555555554443
No 49
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.22 E-value=1.3e-06 Score=60.93 Aligned_cols=40 Identities=35% Similarity=0.457 Sum_probs=37.6
Q ss_pred CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 388 ~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
+++++..|++.|++|.|+++|+ +.++.++++|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999 789999999999999998
No 50
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00083 Score=69.20 Aligned_cols=250 Identities=14% Similarity=0.176 Sum_probs=177.4
Q ss_pred chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-----C----hhhHHHHHhcCCHHHHHHHHhcCCh-----
Q 010019 210 TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG-----N----EVVKESYMELKIDELILEILSRQRN----- 275 (520)
Q Consensus 210 ~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-----~----e~nr~~i~~~g~i~~Lv~lL~~~~~----- 275 (520)
.+.+++.+|++.++++|. .++.++...++..+..+.-. + +.--+.+++.+++++|+.-+.+-+.
T Consensus 118 Yp~lveln~V~slL~LLg--HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkee 195 (536)
T KOG2734|consen 118 YPILVELNAVQSLLELLG--HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEE 195 (536)
T ss_pred HHHHHHhccHHHHHHHhc--CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhh
Confidence 367788999999999997 45677777888888777521 1 1234577888999999999987544
Q ss_pred -HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC-CChhHHHHHHHHHHHhc-cChhhHHHHHh
Q 010019 276 -DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG-LSSPSLISASIALKAVA-VNDEICKSVAE 352 (520)
Q Consensus 276 -~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~-~~~~~~~~a~~aL~~La-~~~e~~~~i~~ 352 (520)
.-+-++...+-||..-+. +.+..+++.|.+.-|+.-+... +-..-+..+.-.|+-+. .+++++..+..
T Consensus 196 a~gv~~~L~vveNlv~~r~---------~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~ 266 (536)
T KOG2734|consen 196 ADGVHNTLAVVENLVEVRP---------AICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP 266 (536)
T ss_pred hhhhHHHHHHHHHHHhccH---------HHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC
Confidence 333445566667765432 3456778878777777755443 21223445555555555 45678999999
Q ss_pred cCChHHHHHHHhccCC----CC-cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010019 353 NGGIDALLRCIDDSGL----QG-NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITV 427 (520)
Q Consensus 353 ~Ggv~~Ll~lL~~~~~----~~-~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~n 427 (520)
..||..+++-+.-+.. .. ..++.++-..+|+.+-..++||..++...|++...-+|+ + ...-+..+..+|-.
T Consensus 267 l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr-~--Kk~sr~SalkvLd~ 343 (536)
T KOG2734|consen 267 LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR-E--KKVSRGSALKVLDH 343 (536)
T ss_pred cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH-H--HHHhhhhHHHHHHH
Confidence 9999999988754311 11 247889999999999999999999999999997777776 2 34556778899998
Q ss_pred HhcCCH--HHHHHHHhcCcHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHh
Q 010019 428 LSLRSP--ENAARAMEAGSGDLAIQAMLKFP--------NAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 428 La~~~~--~~~~~i~~~G~i~~lv~~L~~~~--------~~~~vqk~A~~aL~nL~ 473 (520)
...+.+ +++..+++.+|...+.-+..+-| ....+-+..|+.|+.+-
T Consensus 344 am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 344 AMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred HHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 888776 89999999999888776643222 33556677777777664
No 51
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.17 E-value=4.5e-06 Score=58.20 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=37.1
Q ss_pred CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 432 SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 432 ~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
+|++++.+++.|+++.|+++|. +.+..++++|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999996 478999999999999996
No 52
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.0028 Score=71.24 Aligned_cols=428 Identities=14% Similarity=0.082 Sum_probs=253.0
Q ss_pred CCCcchhhhhhHHHHHHHHH---HHHhhcCCChhHHHHHHHHHH-hhcCcc-cCCc---------------cccC-CC--
Q 010019 55 MGPPKTVRTISQEAFDEVVK---ENMEDLGMEPTEALQDAIQTL-SLQGVD-LSGI---------------VKCV-PG-- 111 (520)
Q Consensus 55 ~~~~~~~~~isQetfDe~V~---eni~~~~m~p~eal~~aI~qf-~~qgvd-ls~i---------------~~~~-~~-- 111 (520)
|=-|+.+|...-|+-|++.+ .|+|.=.|.-|-+-|.-.-+| +.|-.. -++- .|.. -|
T Consensus 1594 lLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~i 1673 (2235)
T KOG1789|consen 1594 LLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDI 1673 (2235)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeE
Confidence 33457788888888887765 688888899888887777777 555321 1111 0110 00
Q ss_pred --------CCC---CCCCcHHHHHHHHHHHhhcCC-------------------C----CCChhhHHHHHHHHHHHHHHh
Q 010019 112 --------ESS---LKDNPLIQSLERLKQLDLNSK-------------------D----KFSDEDLNEMMGLFDKLIELC 157 (520)
Q Consensus 112 --------~~~---~~~~~~~~~l~~L~~~l~~~~-------------------~----~~~~~d~~~~~~al~~L~~l~ 157 (520)
+.. .+..=+...++.+++...... + +..-...+.+.-+|..|+++.
T Consensus 1674 firVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli 1753 (2235)
T KOG1789|consen 1674 FIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLV 1753 (2235)
T ss_pred EEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHH
Confidence 000 011112234444433221110 0 001112345667899999998
Q ss_pred cCCCChhhHHHH----HhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCCh
Q 010019 158 GGNEGSVNAAVA----TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP 233 (520)
Q Consensus 158 ~~~~~~~~r~~i----~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~ 233 (520)
+. ++.-...+ .--|-.|.+..+++.. ++..++.-||+.+.-++..++.-..+..++.+-.|+.+|.+. +
T Consensus 1754 ~~--nPdlasvfgSe~~lig~F~l~~~~lr~~--~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~---P 1826 (2235)
T KOG1789|consen 1754 SA--NPDLASVFGSEILLIGNFPLLITYLRCR--KHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQ---P 1826 (2235)
T ss_pred hh--CcchhhhccchhhhhcccHHHHHHHHHc--CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcC---h
Confidence 86 55322222 2237788888888876 466788888999888776666667888889888899999754 5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCC--cchhhhh---hchHHHH
Q 010019 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDD--DQVVASQ---VYGYARR 307 (520)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd--~~v~~~~---a~~~a~~ 307 (520)
...+.++.+|..+++..+-. ..-++.|++..+.+++-..+. .....++..|..|..+.- +||..-- -.+.-..
T Consensus 1827 S~R~~vL~vLYAL~S~~~i~-keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d 1905 (2235)
T KOG1789|consen 1827 SMRARVLDVLYALSSNGQIG-KEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFAD 1905 (2235)
T ss_pred HHHHHHHHHHHHHhcCcHHH-HHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHH
Confidence 55566777787777654444 444577888888887765443 333447778888887653 2221000 0000001
Q ss_pred HHHcCCHHHHHHHHhcCC-ChhHH------HHHHHHHHHhccC--------hhh------------------------HH
Q 010019 308 FAKIGIARALVHSLHAGL-SSPSL------ISASIALKAVAVN--------DEI------------------------CK 348 (520)
Q Consensus 308 i~~~g~l~~Lv~lL~~~~-~~~~~------~~a~~aL~~La~~--------~e~------------------------~~ 348 (520)
+.. ++=+..+..+.+.+ ++++. ......+..++.. ++. .+
T Consensus 1906 ~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R 1984 (2235)
T KOG1789|consen 1906 SLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINR 1984 (2235)
T ss_pred HHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhH
Confidence 111 22255566655433 33322 1122223333210 000 00
Q ss_pred HHHh-------------cCChHHHHHHHhccCCCC-cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019 349 SVAE-------------NGGIDALLRCIDDSGLQG-NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414 (520)
Q Consensus 349 ~i~~-------------~Ggv~~Ll~lL~~~~~~~-~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~ 414 (520)
.++. .|-++.++++|.....++ -.++...|+-. .+..+|.-.+++...|-+|.++.+|. ..+
T Consensus 1985 ~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~--L~r~hP~LADqip~LGylPK~~~Am~--~~n 2060 (2235)
T KOG1789|consen 1985 EFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVE--LVRHHPNLADQLPSLGYLPKFCTAMC--LQN 2060 (2235)
T ss_pred HHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHH--HHHhCcchhhhCCCccchHHHHHHHH--hcC
Confidence 0110 022334455555432222 13444444333 34578888899999999999999997 334
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHH
Q 010019 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIR 493 (520)
Q Consensus 415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~ 493 (520)
..+-..|..+|..|+. +.-.+.++.....+..++..|++.++ ..--||.+|..+..+ ..+.....+..|..+.|.
T Consensus 2061 ~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~~~---~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL 2136 (2235)
T KOG1789|consen 2061 TSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQPS---LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLL 2136 (2235)
T ss_pred CcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhcch---HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHH
Confidence 4556889999999996 66667777776677779999987543 444799999988765 567888889999999998
Q ss_pred HHHHhC
Q 010019 494 QAKENH 499 (520)
Q Consensus 494 ~~~~~h 499 (520)
+++.-.
T Consensus 2137 ~LLd~~ 2142 (2235)
T KOG1789|consen 2137 QLLDSS 2142 (2235)
T ss_pred HHhccc
Confidence 887543
No 53
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00018 Score=77.12 Aligned_cols=309 Identities=14% Similarity=0.085 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHH--HH--hcCcHHHHHHHHhhcccCcHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAV--AT--KNGGVELVCSICYKMRCGSKRVLDSC 196 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~--i~--~~Gaip~Lv~lL~~~~~~~~~~~~~a 196 (520)
.+.+..|.+.+.+ .|...+-.|+..|.+.|.. +.+.-+. .- -.=.+|.++.+.++. .+.+...|
T Consensus 127 pelLp~L~~~L~s-------~d~n~~EgA~~AL~KIcED--sa~~lds~~~~rpl~~mipkfl~f~~h~---spkiRs~A 194 (885)
T KOG2023|consen 127 PELLPQLCELLDS-------PDYNTCEGAFGALQKICED--SAQFLDSDVLTRPLNIMIPKFLQFFKHP---SPKIRSHA 194 (885)
T ss_pred hhHHHHHHHHhcC-------CcccccchhHHHHHHHHhh--hHHHHhhhcccCchHHhHHHHHHHHhCC---ChhHHHHH
Confidence 4568888888887 5656666788888899985 3321111 00 023578888888875 66776666
Q ss_pred HHHHHHhhcccccchhHHhcCCcHHHHHHH--hcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCCHHHHHHHHhc
Q 010019 197 LKTMALLVHDVQSTETFRTGGGPKLLVNIL--IDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSR 272 (520)
Q Consensus 197 l~~La~l~~~~~~~~~i~~~ggi~~Lv~lL--~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~--~g~i~~Lv~lL~~ 272 (520)
+..+....-.+ .+.+.. .+..+++.| .....+++++...|.++..+.. .--+.++- .++++.++..-+.
T Consensus 195 ~~cvNq~i~~~--~qal~~--~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle---vr~dkl~phl~~IveyML~~tqd 267 (885)
T KOG2023|consen 195 VGCVNQFIIIQ--TQALYV--HIDKFLEILFALANDEDPEVRKNVCRALVFLLE---VRPDKLVPHLDNIVEYMLQRTQD 267 (885)
T ss_pred HhhhhheeecC--cHHHHH--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---hcHHhcccchHHHHHHHHHHccC
Confidence 66555444332 233321 234444433 1235678999888888877653 22233432 2566666665566
Q ss_pred CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH--cCCHHHHHHHHhcCC-ChhHH-------------------
Q 010019 273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGL-SSPSL------------------- 330 (520)
Q Consensus 273 ~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~--~g~l~~Lv~lL~~~~-~~~~~------------------- 330 (520)
++.++--+||.....++....++. .+.. ...+|.|++-|.-.. |..++
T Consensus 268 ~dE~VALEACEFwla~aeqpi~~~----------~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPR 337 (885)
T KOG2023|consen 268 VDENVALEACEFWLALAEQPICKE----------VLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPR 337 (885)
T ss_pred cchhHHHHHHHHHHHHhcCcCcHH----------HHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccch
Confidence 566888889999998987664432 1221 245677766554221 11111
Q ss_pred -----------------------------------HHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHH
Q 010019 331 -----------------------------------ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375 (520)
Q Consensus 331 -----------------------------------~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~ 375 (520)
+..+.+|--|+ -+.....++.++-+|+.+..+....+.
T Consensus 338 fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vr 410 (885)
T KOG2023|consen 338 FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVR 410 (885)
T ss_pred hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhh
Confidence 11111222221 123334456667777665544557889
Q ss_pred HHHHHHHHHhhC-C-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhcCcHHHHHHH
Q 010019 376 RICCSLLSKLAG-S-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR--SPENAARAMEAGSGDLAIQA 451 (520)
Q Consensus 376 ~~al~aL~~La~-~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~--~~~~~~~i~~~G~i~~lv~~ 451 (520)
+.+.-+|+.+|. + +.....+- .-+|.++++|. ...|-|+.-+||+|+.-+.- +.+ ..+... ..+..+++.
T Consensus 411 EagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~L~--DKkplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~ 484 (885)
T KOG2023|consen 411 EAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSLLD--DKKPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRR 484 (885)
T ss_pred hhhHHHHHHHHHHHhhhcccchH--HHHHHHHHHhc--cCccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHH
Confidence 999999999983 2 11112222 13677888887 67899999999999876521 001 111111 112222222
Q ss_pred HHhCCCCHHHHHHHHHHHHHHh
Q 010019 452 MLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 452 L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
+-. ++..||+.||.|.+.+-
T Consensus 485 llD--~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 485 LLD--SNKKVQEAACSAFATLE 504 (885)
T ss_pred Hhc--ccHHHHHHHHHHHHHHH
Confidence 222 57899999999999884
No 54
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=98.09 E-value=1.3e-05 Score=67.15 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHH
Q 010019 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKE 497 (520)
Q Consensus 418 ~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~ 497 (520)
+...+.+|+|||.+++.++..+.+.||++.++....-...+|-+.++|.|+||||+.+|++++..+.+......
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~~------ 76 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQGV------ 76 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccCC------
Confidence 56678999999999999999999999999999998777789999999999999999999999877665322111
Q ss_pred hCcchHHHHHHHHHHcCCCC
Q 010019 498 NHEICKDAATDALRDLGLDD 517 (520)
Q Consensus 498 ~h~~~~~~a~aALr~Lg~~~ 517 (520)
+-..+|+.+|++.
T Consensus 77 -------~~~~~L~~~G~~v 89 (102)
T PF09759_consen 77 -------ADNEELEELGLEV 89 (102)
T ss_pred -------cchHHHHHcCCeE
Confidence 3456677777654
No 55
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.08 E-value=0.0041 Score=63.98 Aligned_cols=306 Identities=9% Similarity=0.067 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHh-------cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHh
Q 010019 143 LNEMMGLFDKLIELCGGNEGSVNAAVATK-------NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT 215 (520)
Q Consensus 143 ~~~~~~al~~L~~l~~~~~~~~~r~~i~~-------~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~ 215 (520)
.+.+.-.+.-+-.+.++ +. .|..+.+ .-..+..+.+|... +.-+.......++.+..-.. ..+.
T Consensus 80 dd~v~yvL~li~DmLs~--d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r~---d~~iv~~~~~Ils~la~~g~---~~~~ 150 (442)
T KOG2759|consen 80 DDTVQYVLTLIDDMLSE--DR-SRVDLFHDYAHKLKRTEWLSFLNLLNRQ---DTFIVEMSFRILSKLACFGN---CKME 150 (442)
T ss_pred HHHHHHHHHHHHHHHhh--Cc-hHHHHHHHHHHhhhccchHHHHHHHhcC---ChHHHHHHHHHHHHHHHhcc---cccc
Confidence 34455566666666663 32 2333332 12355667777653 43333323333433321110 1111
Q ss_pred cCC----cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh-cCCh-HHHHHHHHHHHHhc
Q 010019 216 GGG----PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS-RQRN-DSIQSLYDAIRVLL 289 (520)
Q Consensus 216 ~gg----i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~-~~~~-~~~~~a~~aL~~Ls 289 (520)
.+- ...|-..|.+ +.+.+-...+.++|..+.. .++.|..++.+.++..++..+. ++.. .++=..+-.++-|+
T Consensus 151 ~~e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLt 228 (442)
T KOG2759|consen 151 LSELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLT 228 (442)
T ss_pred chHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhh
Confidence 111 1223344554 3445555567778877754 5678999999999999999994 3333 55556777888888
Q ss_pred CCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccCh-------hhHHHHHhcCChHHHHHH
Q 010019 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-------EICKSVAENGGIDALLRC 362 (520)
Q Consensus 290 ~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~-------e~~~~i~~~Ggv~~Ll~l 362 (520)
.+... |+.+...+.|+.|.++++..+...+.+-++.++.|+.... +.+..++..+ ++..++.
T Consensus 229 Fn~~~----------ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~ 297 (442)
T KOG2759|consen 229 FNPHA----------AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQS 297 (442)
T ss_pred cCHHH----------HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHH
Confidence 76421 3344456899999999998665567777888999998443 4455566544 5666666
Q ss_pred HhccCCCCcHHHHHHHHHHH-------HHhhCCCchHHHHHh--------------------------cCCHHHHHHHHh
Q 010019 363 IDDSGLQGNKTVARICCSLL-------SKLAGSDSNKSAIIE--------------------------NGGMDKLIVVSA 409 (520)
Q Consensus 363 L~~~~~~~~~~v~~~al~aL-------~~La~~~~~k~~Iv~--------------------------~g~l~~Lv~lL~ 409 (520)
|....- .+.++....-.+- ..|++.|+-+..+.. ...+..|+.+|+
T Consensus 298 L~~rky-sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe 376 (442)
T KOG2759|consen 298 LEERKY-SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLE 376 (442)
T ss_pred HHhcCC-CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHh
Confidence 654221 1224443332221 222333343333321 124778899998
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 410 ~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
. +.+|.+..-||.=|.......|+-+..+..-||=+.++++|. | +++.|..+|..|+.-|-.
T Consensus 377 ~-s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln-h-~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 377 T-SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN-H-EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred c-CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc-C-CCchHHHHHHHHHHHHHh
Confidence 4 457999999999999999899999999999999999999993 4 689999999999877643
No 56
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0032 Score=71.82 Aligned_cols=340 Identities=12% Similarity=0.052 Sum_probs=192.8
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcc-cCcHHHHHHHHHHH
Q 010019 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR-CGSKRVLDSCLKTM 200 (520)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~-~~~~~~~~~al~~L 200 (520)
+.+..|.....| .+....-.|+..|..+... ..++ ..+-++-+..++...- ..+..+...+++++
T Consensus 118 ell~~L~q~~~S-------~~~~~rE~al~il~s~~~~---~~~~----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~ 183 (1075)
T KOG2171|consen 118 ELLQFLFQSTKS-------PNPSLRESALLILSSLPET---FGNT----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRAL 183 (1075)
T ss_pred HHHHHHHHHhcC-------CCcchhHHHHHHHHhhhhh---hccc----cchhHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 467777777666 5665566667666665542 1111 2345556666665432 22334776777777
Q ss_pred HHhhcccc-cchhHHh-cCCcHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChhh-HHHHHhcCCHHHHHHHHhcC--
Q 010019 201 ALLVHDVQ-STETFRT-GGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNEVV-KESYMELKIDELILEILSRQ-- 273 (520)
Q Consensus 201 a~l~~~~~-~~~~i~~-~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e~n-r~~i~~~g~i~~Lv~lL~~~-- 273 (520)
.+.....+ ++..+.. ..-+|.++..|... .++.+....++.++-.++...+.. |..+. .++...+.+.++.
T Consensus 184 ~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l 261 (1075)
T KOG2171|consen 184 GAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKEL 261 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccc
Confidence 66553322 1222222 24567777776543 345556677777777765433322 22221 3556666666654
Q ss_pred ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH--cCCHHHHHHHHhcCCCh---------------hHHHHHHHH
Q 010019 274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGLSS---------------PSLISASIA 336 (520)
Q Consensus 274 ~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~--~g~l~~Lv~lL~~~~~~---------------~~~~~a~~a 336 (520)
+++++..|...|..++... + .-.|.... .-.++.++..+....+. .-...|-.+
T Consensus 262 ~~~~R~~ALe~ivs~~e~A-p--------~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~ 332 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYA-P--------AMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQA 332 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhh-H--------HHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHH
Confidence 3377777888888777541 1 11112211 12355555555433211 011223444
Q ss_pred HHHhccChhhHHHHHhcC---ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccC
Q 010019 337 LKAVAVNDEICKSVAENG---GIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 337 L~~La~~~e~~~~i~~~G---gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
|-.||. ..| ..++++..+.....+.++.-.++++-+|+.++ |+.+.-..... ..++.++..|+ .
T Consensus 333 lDrlA~---------~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~--D 400 (1075)
T KOG2171|consen 333 LDRLAL---------HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLN--D 400 (1075)
T ss_pred HHHHHh---------cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcC--C
Confidence 444442 223 25666666655444456788999999999998 44433333322 34566666666 6
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHH
Q 010019 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKL 491 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~l 491 (520)
.+|.|+..||-+|..++..=+...+.-...-.++.++..|. .+.++.||..|+.++-|+... .++.....++.=..+.
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld-~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~ 479 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD-STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKK 479 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc-ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 68999999999999999754444444444446677787775 467899999999999999753 4455555555333335
Q ss_pred HHHHHHhC
Q 010019 492 IRQAKENH 499 (520)
Q Consensus 492 L~~~~~~h 499 (520)
+..+....
T Consensus 480 l~~L~~~~ 487 (1075)
T KOG2171|consen 480 LLLLLQSS 487 (1075)
T ss_pred HHHHhcCC
Confidence 54444443
No 57
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0034 Score=68.69 Aligned_cols=304 Identities=11% Similarity=0.097 Sum_probs=185.1
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHhc-CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc----CCcHH
Q 010019 147 MGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG----GGPKL 221 (520)
Q Consensus 147 ~~al~~L~~l~~~~~~~~~r~~i~~~-Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~----ggi~~ 221 (520)
.+.|+.|.=.|.. .......-++ .++-.++.-.++.. ++..+...|+++|.+-+.=. +.-|-.. =..+.
T Consensus 148 ~~slealGyice~---i~pevl~~~sN~iLtaIv~gmrk~e-~s~~vRLaa~~aL~nsLef~--~~nF~~E~ern~iMqv 221 (859)
T KOG1241|consen 148 ESSLEALGYICED---IDPEVLEQQSNDILTAIVQGMRKEE-TSAAVRLAALNALYNSLEFT--KANFNNEMERNYIMQV 221 (859)
T ss_pred HHHHHHHHHHHcc---CCHHHHHHHHhHHHHHHHhhccccC-CchhHHHHHHHHHHHHHHHH--HHhhccHhhhceeeee
Confidence 5577778888874 3333554443 34445555554432 46677777888886543110 0011001 12334
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC---------
Q 010019 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD--------- 292 (520)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d--------- 292 (520)
+++.-. +.+.+++..|+.+|-.+.+-+...-+..+.......-+..+++..+++--.+...-+++|..+
T Consensus 222 vcEatq--~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e 299 (859)
T KOG1241|consen 222 VCEATQ--SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE 299 (859)
T ss_pred eeeccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 567899999999998887766666667777777888889999877766666665555555321
Q ss_pred ---CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-Ch-----hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHH
Q 010019 293 ---DDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SS-----PSLISASIALKAVAVNDEICKSVAENGGIDALLRCI 363 (520)
Q Consensus 293 ---d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~-----~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL 363 (520)
.+.+|. .+-+++.-. .+.+|.|+++|.... +. ...+.|-.+|.-++ ..++...+++++.++
T Consensus 300 ~~d~~~~p~--~~~fa~~a~-~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A-------~~~~D~Iv~~Vl~Fi 369 (859)
T KOG1241|consen 300 AVDQGLPPS--SKYFARQAL-QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFA-------QCVGDDIVPHVLPFI 369 (859)
T ss_pred HhhcCCCch--hhHHHHHHH-hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHH-------HHhcccchhhhHHHH
Confidence 122221 112222222 368999999998732 21 22233333333232 123344567888888
Q ss_pred hccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHH-HHHh
Q 010019 364 DDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA-RAME 441 (520)
Q Consensus 364 ~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~-~i~~ 441 (520)
..+...+|..=.+.+.-+++.+- +.+..+..=.-.+++|.++.+|. .++-.++.-+.|+|..++...|+.+. ....
T Consensus 370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l 447 (859)
T KOG1241|consen 370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELL 447 (859)
T ss_pred HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence 76655566667777887887776 44444433333489999999998 55677889999999999976664432 2222
Q ss_pred cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
.+.+..+++-|. ++|.+-.++||++-+|+
T Consensus 448 ~~~l~~l~~gL~---DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 448 QSKLSALLEGLN---DEPRVASNVCWAFISLA 476 (859)
T ss_pred hHHHHHHHHHhh---hCchHHHHHHHHHHHHH
Confidence 344556666564 46788899999999998
No 58
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0065 Score=62.84 Aligned_cols=264 Identities=12% Similarity=0.093 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc------cc----chhHHhc
Q 010019 147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV------QS----TETFRTG 216 (520)
Q Consensus 147 ~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~------~~----~~~i~~~ 216 (520)
-..++++.-++. -|.---.+++.++|+.|+.||... +.++....+.-+--++.+. ++ -.++++.
T Consensus 102 hd~IQ~mhvlAt---~PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg 175 (536)
T KOG2734|consen 102 HDIIQEMHVLAT---MPDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG 175 (536)
T ss_pred HHHHHHHHhhhc---ChHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc
Confidence 345666666665 455555889999999999999874 5667666666666655321 11 2445667
Q ss_pred CCcHHHHHHHhcCCCChHH----HHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCC--hHHHHHHHHHHHHhcC
Q 010019 217 GGPKLLVNILIDGNEDPEI----LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR--NDSIQSLYDAIRVLLT 290 (520)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v----~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~Ls~ 290 (520)
+.++.|+..+.+-+++.+- ...++..+-|+..-.+...+.+++.|.+..|+.-+.... +.-.+.|...|.-+..
T Consensus 176 ~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq 255 (536)
T KOG2734|consen 176 QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ 255 (536)
T ss_pred cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc
Confidence 7888888888776543332 234567777776666667777888887777776554332 2444556666666555
Q ss_pred CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC--C------hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHH
Q 010019 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--S------SPSLISASIALKAVAVNDEICKSVAENGGIDALLRC 362 (520)
Q Consensus 291 ~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~--~------~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~l 362 (520)
+.+. +.+.+...+|+..|+.-+.-+. | .+..++.+..|..+...++|+..++...|+....-+
T Consensus 256 ~s~e---------~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lm 326 (536)
T KOG2734|consen 256 NSDE---------NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLM 326 (536)
T ss_pred cCch---------hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHH
Confidence 4431 2235557789999988876432 2 256678888888888889999999999999877666
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhhCCC---chHHHHHhcCCHHHHHHHHhcc--------CCCHHHHHHHHHHHHHHhc
Q 010019 363 IDDSGLQGNKTVARICCSLLSKLAGSD---SNKSAIIENGGMDKLIVVSARF--------SDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 363 L~~~~~~~~~~v~~~al~aL~~La~~~---~~k~~Iv~~g~l~~Lv~lL~~~--------~~~~~v~~~a~~aL~nLa~ 430 (520)
|+.- ....-.++++|--...++ +++..+++.+|+..+..+--+. ......-++.|+.|+.|-.
T Consensus 327 lr~K-----k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 327 LREK-----KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHH-----HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 6641 134567788887776554 5777789999998888754321 1235677889999988754
No 59
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.77 E-value=0.00011 Score=61.61 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019 375 ARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441 (520)
Q Consensus 375 ~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~ 441 (520)
....+.+|+||+ .++.+++.+.+.||+|.+++.-..-..+|-++|+|.++|.||+.++++|++.|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456788999998 6789999999999999999987655668999999999999999999999988765
No 60
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.73 E-value=0.0045 Score=64.58 Aligned_cols=255 Identities=13% Similarity=0.062 Sum_probs=168.1
Q ss_pred HHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCC
Q 010019 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED 232 (520)
Q Consensus 153 L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~ 232 (520)
|-++.++ .+.-+....-.-.++.+..++=+ +++++.+.++..+--+..+...-..+.+.+.--.++..|.+...+
T Consensus 7 Lv~l~~~--~p~l~~~~~~~~~~~~i~~~lL~---~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 7 LVDLLKR--HPTLKYDLVLSFFGERIQCMLLS---DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN 81 (371)
T ss_pred HHHHHHh--CchhhhhhhHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC
Confidence 3444443 44444444333344444433322 257888888888877777766566677778778888889876666
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019 233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (520)
Q Consensus 233 ~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g 312 (520)
....++|++.++.....+. ..+ .+..|++..++.+.....+.....+..+|.-|+..+- +.+.+.|
T Consensus 82 ~~ER~QALkliR~~l~~~~-~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P------------~lv~~~g 147 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKK-GPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP------------ELVAECG 147 (371)
T ss_pred hHHHHHHHHHHHHHHHhcC-Ccc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH------------HHHHHcC
Confidence 6666789999988765422 222 2355788899999988766777778889999887652 1455899
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC---CCCcH--HHHHHHHHHHHHhhC
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG---LQGNK--TVARICCSLLSKLAG 387 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~---~~~~~--~v~~~al~aL~~La~ 387 (520)
|+..|++.+-+++ .++....+.++-++..++..++.+...--++.++.-+.+.. ...+. +....+..++..+-.
T Consensus 148 G~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr 226 (371)
T PF14664_consen 148 GIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR 226 (371)
T ss_pred CHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence 9999999998854 33667788999999888887776655444666776666541 11122 244555555555443
Q ss_pred CCchHHHHH--hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 388 SDSNKSAII--ENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 388 ~~~~k~~Iv--~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
+-.+--.+. +..++.-|+..|. .+++.+++..+..|..+-
T Consensus 227 sW~GLl~l~~~~~~~lksLv~~L~--~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 227 SWPGLLYLSMNDFRGLKSLVDSLR--LPNPEIRKAILDLLFDLL 268 (371)
T ss_pred cCCceeeeecCCchHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 322222222 2257888999997 667889998888887664
No 61
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.73 E-value=0.00063 Score=70.39 Aligned_cols=182 Identities=17% Similarity=0.245 Sum_probs=136.6
Q ss_pred HHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019 308 FAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (520)
Q Consensus 308 i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La 386 (520)
|-..|++..|+.++..-. ...+...+...|-.+.+ .+|+..+++.| ...++.+-+.. +. +++++..++.|.+|-
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~-e~--~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER-EP--VELARSVAGILEHMF 250 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc-Cc--HHHHHHHHHHHHHHh
Confidence 334589999999998633 23456677777766653 57888899887 66777665432 22 589999999999997
Q ss_pred C-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019 387 G-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (520)
Q Consensus 387 ~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~ 464 (520)
. +.+....++++||++.++---+ ..+|.+.++|..+|.|+++. ..+..+.+++..+.+.|.-+- .+.+.-..-.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~r--Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA--~skDel~R~~ 326 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCR--RTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA--FSKDELLRLH 326 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecc--cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh--cchHHHHHHH
Confidence 4 4677788999999999887777 45799999999999999874 345667788888888877544 3456777788
Q ss_pred HHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC
Q 010019 465 SCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH 499 (520)
Q Consensus 465 A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h 499 (520)
||.|++-|++ +.|.-..+...|-..++.-....|
T Consensus 327 AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~ 360 (832)
T KOG3678|consen 327 ACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASL 360 (832)
T ss_pred HHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhcc
Confidence 9999999964 677777777778777776665555
No 62
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.022 Score=60.70 Aligned_cols=308 Identities=13% Similarity=0.083 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHH--HHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcC---
Q 010019 143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVEL--VCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--- 217 (520)
Q Consensus 143 ~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~--Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~g--- 217 (520)
.....+++..+.-.|.+ ..+.+.+..+++|-. ....++.. .++.+...+|++|..-+..- +.-|-.++
T Consensus 148 ~~~k~~sl~~~gy~ces---~~Pe~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv--~~nf~~E~erN 220 (858)
T COG5215 148 VSGKCESLGICGYHCES---EAPEDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFV--QGNFCYEEERN 220 (858)
T ss_pred hHhHHHHHHHHHHHhhc---cCHHHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHH--HHhhcchhhhc
Confidence 45568899999999984 334566666655432 22334443 46777888888887622110 01111111
Q ss_pred -CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC----
Q 010019 218 -GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD---- 292 (520)
Q Consensus 218 -gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d---- 292 (520)
-.+.+++.-+ ..+.++|..++.++..+..-+...-+.+++.-....+...+++.++++-..|...-+.+|..+
T Consensus 221 y~mqvvceatq--~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~ 298 (858)
T COG5215 221 YFMQVVCEATQ--GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGE 298 (858)
T ss_pred hhheeeehhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhH
Confidence 1333444433 467899999999998877655555567777666777788888877766555554443444321
Q ss_pred -----CcchhhhhhchHHHHHHHcCCHHHHHHHHhc-CCCh-----hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH
Q 010019 293 -----DDQVVASQVYGYARRFAKIGIARALVHSLHA-GLSS-----PSLISASIALKAVAVNDEICKSVAENGGIDALLR 361 (520)
Q Consensus 293 -----d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~-~~~~-----~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~ 361 (520)
-+.+|. +.|..++.-++ +.+|.|+.||.. +.|. .+-..|..+|--.+. + .....+.+++.
T Consensus 299 ~e~~~~pe~p~-qn~~fa~aav~-dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~----~gd~i~~pVl~ 369 (858)
T COG5215 299 MEDKYLPEVPA-QNHGFARAAVA-DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---L----KGDKIMRPVLG 369 (858)
T ss_pred HHHhhcccCch-hhcchHHHHHH-HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---H----hhhHhHHHHHH
Confidence 123333 55666655442 589999999987 3332 222333333322221 1 11122456777
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhhCCC--chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019 362 CIDDSGLQGNKTVARICCSLLSKLAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439 (520)
Q Consensus 362 lL~~~~~~~~~~v~~~al~aL~~La~~~--~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i 439 (520)
........++..=.+.+.-+++.+...+ +....++. .++|.+...|. ...-.+++-+.|++..|+. ....+
T Consensus 370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~--D~~l~vk~ttAwc~g~iad----~va~~ 442 (858)
T COG5215 370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMS--DSCLWVKSTTAWCFGAIAD----HVAMI 442 (858)
T ss_pred HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcc--cceeehhhHHHHHHHHHHH----HHHHh
Confidence 7766544444556677888888887433 45556665 68999999887 4456788999999999984 23333
Q ss_pred Hh-cCcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 440 ME-AGSGDLAIQA-MLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 440 ~~-~G~i~~lv~~-L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
+. +|-++..+.+ +..-.+++.+..+.||..-|++.+
T Consensus 443 i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred cCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 32 3433333333 222236778888999999999754
No 63
>PF05536 Neurochondrin: Neurochondrin
Probab=97.64 E-value=0.0033 Score=68.92 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC-----h-hHHHHHHHH
Q 010019 263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-----S-PSLISASIA 336 (520)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~-----~-~~~~~a~~a 336 (520)
+...+.+|+...++-.-.+...+..++.+++... ...|.+.++=|.+-|-.+|+++.. + ..+.-+...
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~------~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDS------QTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhH------HHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 5567778887764444456667777777655322 122356677678889999987541 2 334445667
Q ss_pred HHHhccChhhH--HHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019 337 LKAVAVNDEIC--KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414 (520)
Q Consensus 337 L~~La~~~e~~--~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~ 414 (520)
|..++..++.. ..++ +-||.|++++....+ .+++..|+.+|..++.+++++.++++.|+++.|++.+.. .
T Consensus 81 L~~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~---~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~ 152 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMV--SRIPLLLEILSSSSD---LETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---Q 152 (543)
T ss_pred HHHHcCChhhhcCHHHH--HHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---C
Confidence 77888776653 4444 348999999998654 379999999999999999999999999999999999973 5
Q ss_pred HHHHHHHHHHHHHHhcCCHH-----HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhC
Q 010019 415 ASVLQEVMSIITVLSLRSPE-----NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN 476 (520)
Q Consensus 415 ~~v~~~a~~aL~nLa~~~~~-----~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~ 476 (520)
+...+.++.+|.+++.+... +.+.+. ..+..+-+.++...+.. .-+.|..|.++-.+.
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~~~~~--kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSFHGED--KFELLEFLSAFLPRS 215 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhhccch--HHHHHHHHHHhcCcC
Confidence 67789999999998865331 111111 12333444443322222 346788888775544
No 64
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.63 E-value=0.00012 Score=50.43 Aligned_cols=39 Identities=31% Similarity=0.540 Sum_probs=36.0
Q ss_pred CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 389 ~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
++++..+++.|+++.|+++|. ++++.++++++++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence 458889999999999999998 678999999999999997
No 65
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.63 E-value=0.012 Score=62.97 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=153.8
Q ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-----ChHHHHHHHHHHHHhcCCCCcchhhhhhchH
Q 010019 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGY 304 (520)
Q Consensus 230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~ 304 (520)
..+.++...|+++|.|+...++..|+.+.+.|..+.+++.|+.+ +.+..--.++.|+-++..... .
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~---------~ 113 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPD---------D 113 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChh---------H
Confidence 45678889999999999999999999999999999999999987 336656688888876654321 1
Q ss_pred HHHHH-HcCCHHHHHHHHhcCC----------------ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhcc-
Q 010019 305 ARRFA-KIGIARALVHSLHAGL----------------SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS- 366 (520)
Q Consensus 305 a~~i~-~~g~l~~Lv~lL~~~~----------------~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~- 366 (520)
.+.++ +.+++..|+..|..+- +.....+++.+++|+.........-.+.+.++.|+.++...
T Consensus 114 ~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l 193 (446)
T PF10165_consen 114 RKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLL 193 (446)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHh
Confidence 22455 5588888888776421 12446788899999985322211113455677777777654
Q ss_pred --C--CCCcHHHHHHHHHHHHHhhCCCchHHHH--------------HhcCCHHHHHHHHhcc----CCC--HHHHHHHH
Q 010019 367 --G--LQGNKTVARICCSLLSKLAGSDSNKSAI--------------IENGGMDKLIVVSARF----SDD--ASVLQEVM 422 (520)
Q Consensus 367 --~--~~~~~~v~~~al~aL~~La~~~~~k~~I--------------v~~g~l~~Lv~lL~~~----~~~--~~v~~~a~ 422 (520)
. +.+......++..+|.|+=. +....+ .....+..|+.+|.+. ... ....--.+
T Consensus 194 ~~~~~~~~l~~~~~~~in~L~nlpl--~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL 271 (446)
T PF10165_consen 194 PPPPSSPPLDPPHSHAINALLNLPL--ECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLL 271 (446)
T ss_pred ccCCCCCcchhhHHHHHHHHhCCCh--HHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHH
Confidence 1 11223667788888887721 111111 1122466777776542 211 24455667
Q ss_pred HHHHHHhcCCHHHHHHHHh--------------cC--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC
Q 010019 423 SIITVLSLRSPENAARAME--------------AG--SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN 486 (520)
Q Consensus 423 ~aL~nLa~~~~~~~~~i~~--------------~G--~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~ 486 (520)
.+|..++..+...++.+.. .| .-..|+++|. ++. +.+...++-.+-.|+ .+....|++.
T Consensus 272 ~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt-~~~-~~~k~~vaellf~Lc---~~d~~~~v~~ 346 (446)
T PF10165_consen 272 TLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT-SPD-PQLKDAVAELLFVLC---KEDASRFVKY 346 (446)
T ss_pred HHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC-CCC-chHHHHHHHHHHHHH---hhhHHHHHHH
Confidence 7788888765555555543 12 3567788774 555 788888888888885 3444555554
No 66
>PTZ00429 beta-adaptin; Provisional
Probab=97.58 E-value=0.15 Score=57.82 Aligned_cols=295 Identities=12% Similarity=0.024 Sum_probs=161.2
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l 203 (520)
+..|+..+.+ .+.....++++.+-..... +... +-..+-++.++.+. +.++..-+.-.+...
T Consensus 34 ~~ELr~~L~s-------~~~~~kk~alKkvIa~mt~--G~Dv------S~LF~dVvk~~~S~---d~elKKLvYLYL~~y 95 (746)
T PTZ00429 34 GAELQNDLNG-------TDSYRKKAAVKRIIANMTM--GRDV------SYLFVDVVKLAPST---DLELKKLVYLYVLST 95 (746)
T ss_pred HHHHHHHHHC-------CCHHHHHHHHHHHHHHHHC--CCCc------hHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Confidence 4566777766 5666677888776665543 3221 12566777777764 444433233333333
Q ss_pred hcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHH
Q 010019 204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD 283 (520)
Q Consensus 204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 283 (520)
...+ ++.. -=.+..+.+=+. +.++-+...|+++++.+. .+..-+ -.++.+.+.|...+.-+++.|+-
T Consensus 96 a~~~---pela-lLaINtl~KDl~--d~Np~IRaLALRtLs~Ir--~~~i~e-----~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 96 ARLQ---PEKA-LLAVNTFLQDTT--NSSPVVRALAVRTMMCIR--VSSVLE-----YTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred cccC---hHHH-HHHHHHHHHHcC--CCCHHHHHHHHHHHHcCC--cHHHHH-----HHHHHHHHHhcCCCHHHHHHHHH
Confidence 3322 2210 001222222222 457888899999887643 222212 23456677776656578888888
Q ss_pred HHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHHHHHH
Q 010019 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRC 362 (520)
Q Consensus 284 aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~Ll~l 362 (520)
++..|-..+.. .+.+.|.++.|.++|.+ +|+.++.+|+.+|..+... ++... ...+.+..|+..
T Consensus 163 ai~Kly~~~pe------------lv~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~ 227 (746)
T PTZ00429 163 GLGKLFHDDMQ------------LFYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYH 227 (746)
T ss_pred HHHHHHhhCcc------------cccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHH
Confidence 88887653321 22355788999998875 4688999999999998633 22111 112224445555
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHh
Q 010019 363 IDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAARAME 441 (520)
Q Consensus 363 L~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~~~i~~ 441 (520)
|.+..+ -.+...+.+|... .+...... ...+..+...|+ +.++.|.-.|+.++.++... +++....+..
T Consensus 228 L~e~~E----W~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq--~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~ 297 (746)
T PTZ00429 228 LPECNE----WGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMS--HQNPAVVMGAIKVVANLASRCSQELIERCTV 297 (746)
T ss_pred hhcCCh----HHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 554322 2344555555332 22222221 134556666665 56899999999999988753 2333333221
Q ss_pred cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh
Q 010019 442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (520)
Q Consensus 442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e 478 (520)
....+++.++. +++++|--+...|.-++...|.
T Consensus 298 -rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~~P~ 330 (746)
T PTZ00429 298 -RVNTALLTLSR---RDAETQYIVCKNIHALLVIFPN 330 (746)
T ss_pred -HHHHHHHHhhC---CCccHHHHHHHHHHHHHHHCHH
Confidence 12244444431 3556666666666555554443
No 67
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.16 Score=58.47 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=97.3
Q ss_pred CHHHHHHHHhcC---CChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-
Q 010019 313 IARALVHSLHAG---LSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS- 388 (520)
Q Consensus 313 ~l~~Lv~lL~~~---~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~- 388 (520)
.+|++++.+... ++-.-...+..+|+.++. -|...++ |-++.++.+.-.+..++++.|+.+||.+++.++.+
T Consensus 345 v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E---Gc~~~m~-~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 345 VLPPLFEALEAMLQSTEWKERHAALLALSVIAE---GCSDVMI-GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc---ccHHHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 466666665532 333445677788888772 2223332 24555555544444445579999999999999954
Q ss_pred -CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHH
Q 010019 389 -DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF 467 (520)
Q Consensus 389 -~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~ 467 (520)
|+....- ..-.+|.|+..|.. ..++.|+.+|+.+|-|.+...+...-.=.--+..+..+..|. .++.+.+|.++..
T Consensus 421 ~p~iqk~~-~e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~-~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 421 QPEIQKKH-HERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLL-QSSKPYVQEQAVT 497 (1075)
T ss_pred cHHHHHHH-HHhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHH
Confidence 4443333 33467788888874 468999999999999998754433221111233332333333 3467899999999
Q ss_pred HHHHHhh
Q 010019 468 MIRNLVA 474 (520)
Q Consensus 468 aL~nL~~ 474 (520)
+|...+.
T Consensus 498 aIasvA~ 504 (1075)
T KOG2171|consen 498 AIASVAD 504 (1075)
T ss_pred HHHHHHH
Confidence 9998863
No 68
>PTZ00429 beta-adaptin; Provisional
Probab=97.55 E-value=0.14 Score=58.07 Aligned_cols=287 Identities=14% Similarity=0.105 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHh-------cCcHHHHHHHHhhc-ccCcHHHHHHHHHHHHHhhcccccchhH-
Q 010019 143 LNEMMGLFDKLIELCGGNEGSVNAAVATK-------NGGVELVCSICYKM-RCGSKRVLDSCLKTMALLVHDVQSTETF- 213 (520)
Q Consensus 143 ~~~~~~al~~L~~l~~~~~~~~~r~~i~~-------~Gaip~Lv~lL~~~-~~~~~~~~~~al~~La~l~~~~~~~~~i- 213 (520)
++...-+...|++=++. .++-.|..+.+ ...++.++..+++. ...++-+...|.-++..+-... +++
T Consensus 100 pelalLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~---pelv 175 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD---MQLF 175 (746)
T ss_pred hHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---cccc
Confidence 44444455555554443 24444444433 12233333333221 1246777777777777765433 233
Q ss_pred HhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 010019 214 RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293 (520)
Q Consensus 214 ~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd 293 (520)
...+-++.|.++|. ..++.++..|+.+|..++...+. + .-...+.+..|+..|...++=.+-....+|....-.++
T Consensus 176 ~~~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~-~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~ 251 (746)
T PTZ00429 176 YQQDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSE-K-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK 251 (746)
T ss_pred cccchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCch-h-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc
Confidence 34566788888886 46789999999999888754332 1 11223445566666655443222223333322111111
Q ss_pred cchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC--hhhHHHHH-hcCChHHHHHHHhccCCCC
Q 010019 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVA-ENGGIDALLRCIDDSGLQG 370 (520)
Q Consensus 294 ~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~--~e~~~~i~-~~Ggv~~Ll~lL~~~~~~~ 370 (520)
+.+. ..+..+...|+. .++.++-.++.++.+++.. ++....+. +.+ .+++.+++. +
T Consensus 252 ---------~e~~-----~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~--~pLv~L~ss--~-- 310 (746)
T PTZ00429 252 ---------ESAE-----TLLTRVLPRMSH-QNPAVVMGAIKVVANLASRCSQELIERCTVRVN--TALLTLSRR--D-- 310 (746)
T ss_pred ---------HHHH-----HHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH--HHHHHhhCC--C--
Confidence 0111 245666666765 4677888999999988743 33333322 222 466666543 2
Q ss_pred cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ 450 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~ 450 (520)
++++-.++..|..|.... ..++... +.. ..-++.+...|+...+.+|..|+ +++|...++ ..|.+
T Consensus 311 -~eiqyvaLr~I~~i~~~~---P~lf~~~-~~~---Ff~~~~Dp~yIK~~KLeIL~~La--ne~Nv~~IL-----~EL~e 375 (746)
T PTZ00429 311 -AETQYIVCKNIHALLVIF---PNLLRTN-LDS---FYVRYSDPPFVKLEKLRLLLKLV--TPSVAPEIL-----KELAE 375 (746)
T ss_pred -ccHHHHHHHHHHHHHHHC---HHHHHHH-HHh---hhcccCCcHHHHHHHHHHHHHHc--CcccHHHHH-----HHHHH
Confidence 267777777776665322 1122110 111 11122344456666666666665 345554443 22222
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 451 AMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 451 ~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
-.. ..+.++.+++..+|..++.+
T Consensus 376 Ya~--d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 376 YAS--GVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred Hhh--cCCHHHHHHHHHHHHHHHHh
Confidence 221 13445555566666555543
No 69
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.54 E-value=0.0061 Score=65.29 Aligned_cols=268 Identities=15% Similarity=0.100 Sum_probs=169.0
Q ss_pred HHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHH--h-----hcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHH
Q 010019 150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSIC--Y-----KMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKL 221 (520)
Q Consensus 150 l~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL--~-----~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~ 221 (520)
|..||-+.. ++....-+....++..|..+= . .....+..+...|++.|++++-.+ ..|+.+++.|+.+.
T Consensus 2 L~~LRiLsR---d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 2 LETLRILSR---DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred HHHHHHHcc---CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 344444443 454555555555566655543 0 112246678888999999987544 34777888999999
Q ss_pred HHHHHhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCC----------------h-HHHHH
Q 010019 222 LVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQR----------------N-DSIQS 280 (520)
Q Consensus 222 Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~----------------~-~~~~~ 280 (520)
+++.|+.+.+ +.++.....+.+.-++......+..+++. +++..|+..|..+- + .....
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 9999988643 57777888888888777777777777755 78898888886430 1 34556
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC---C--C---hhHHHHHHHHHHHhccChhhHHH---
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG---L--S---SPSLISASIALKAVAVNDEICKS--- 349 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~---~--~---~~~~~~a~~aL~~La~~~e~~~~--- 349 (520)
+..+++|++..-....+ . -....++.|+.++... . + ......+..+|.++-.. ....
T Consensus 159 iLKllFNit~~~~~~~~--------~--~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~ 226 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVP--------E--EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLS 226 (446)
T ss_pred HHHHHHHhhhccCcccc--------h--hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhc
Confidence 88899999875433321 0 1123466666666544 2 1 24556677777777321 1111
Q ss_pred -----------HHhcCChHHHHHHHhccCCC----CcHHHHHHHHHHHHHhhCC-CchHHHHHh---------------c
Q 010019 350 -----------VAENGGIDALLRCIDDSGLQ----GNKTVARICCSLLSKLAGS-DSNKSAIIE---------------N 398 (520)
Q Consensus 350 -----------i~~~Ggv~~Ll~lL~~~~~~----~~~~v~~~al~aL~~La~~-~~~k~~Iv~---------------~ 398 (520)
......+..|+.+|...... .-.+.+.+.+.+|.+++.. ...|..+.. .
T Consensus 227 ~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~ 306 (446)
T PF10165_consen 227 PKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKG 306 (446)
T ss_pred ccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCC
Confidence 11223356777777542211 1125788999999999855 455555543 1
Q ss_pred CC-HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019 399 GG-MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (520)
Q Consensus 399 g~-l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~ 434 (520)
+. -..|+++|. +..+.++..+...|..||.++++
T Consensus 307 ~tL~~rLlrLmt--~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 307 DTLRSRLLRLMT--SPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred cchHHHHHHHhC--CCCchHHHHHHHHHHHHHhhhHH
Confidence 22 468999997 44489999999999999975543
No 70
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.50 E-value=0.00024 Score=48.92 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 433 PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 433 ~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
++++..+++.|+++.++++|. ++++.+++.|+|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence 458889999999999999996 468999999999999995
No 71
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.035 Score=61.08 Aligned_cols=300 Identities=10% Similarity=0.028 Sum_probs=171.0
Q ss_pred cCcHHHHHHHHhhccc-Cc------HHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCC--hHHHHHHHHH
Q 010019 172 NGGVELVCSICYKMRC-GS------KRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED--PEILNSGFAV 242 (520)
Q Consensus 172 ~Gaip~Lv~lL~~~~~-~~------~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~--~~v~~~a~~~ 242 (520)
.+.+|.|+++|.+.+. ++ ....-.||..++-.+.|. .++.++.+++.+-.+ -+-...|..+
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~----------Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD----------IVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc----------chhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 4788999999976432 11 122445677677666432 456777777654333 3444566666
Q ss_pred HHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019 243 VAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH 322 (520)
Q Consensus 243 L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~ 322 (520)
++.+....+..+..-+..+++|.++.++....--+...+.|+|..++..-. +... | .....+.++.|++-|.
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~----e~~~--n--~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP----EAII--N--QELLQSKLSALLEGLN 459 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch----hhcc--c--HhhhhHHHHHHHHHhh
Confidence 666655556666666667899999999985444555779999998884321 1000 0 1112244666666665
Q ss_pred cCCChhHHHHHHHHHHHhcc-ChhhHHHHHhc-------CChHHHHHHHhccCCC---CcHHHHHHHHHHHHHhhCC--C
Q 010019 323 AGLSSPSLISASIALKAVAV-NDEICKSVAEN-------GGIDALLRCIDDSGLQ---GNKTVARICCSLLSKLAGS--D 389 (520)
Q Consensus 323 ~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~-------Ggv~~Ll~lL~~~~~~---~~~~v~~~al~aL~~La~~--~ 389 (520)
.. +.+..++||++-+|+. -.+ ..+.. --.+.++.-|-...+. .+..+...+..+|..|..+ +
T Consensus 460 De--Prva~N~CWAf~~Laea~~e---A~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 460 DE--PRVASNVCWAFISLAEAAYE---AAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred hC--chHHHHHHHHHHHHHHHHHH---hccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 54 5678899999999982 111 11111 1122333332111111 1247888999999999743 3
Q ss_pred chHHHHHhcCCHHH----HHHHHhc----cCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCC
Q 010019 390 SNKSAIIENGGMDK----LIVVSAR----FSD---DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNA 458 (520)
Q Consensus 390 ~~k~~Iv~~g~l~~----Lv~lL~~----~~~---~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~ 458 (520)
+.-..+. +.... |-+.|+. +.+ --.++..-|.+|..+-..-+.-+..+.+ .....+++.|.. ++.
T Consensus 535 ~vy~~v~--~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s-~~s 610 (859)
T KOG1241|consen 535 DVYPMVQ--KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFES-KRS 610 (859)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHHHHHHHcC-Ccc
Confidence 3333332 22222 2223331 111 1256667788888776544443333332 356778888876 567
Q ss_pred HHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019 459 QQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENHE 500 (520)
Q Consensus 459 ~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h~ 500 (520)
..++..|-.++..++.. .+...+++- -..|.|...++++.
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~kym~--~f~pyL~~gL~n~~ 651 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFAKYMP--AFKPYLLMGLSNFQ 651 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHhhcch
Confidence 77899999999988743 333333322 34566666665553
No 72
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0044 Score=66.90 Aligned_cols=303 Identities=13% Similarity=0.157 Sum_probs=177.8
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcC--------CcHHHHHHHhcCCCChHHHHHHHHHHH
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--------GPKLLVNILIDGNEDPEILNSGFAVVA 244 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~g--------gi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (520)
.+.|.|+.+|.+. +.-...-|+.+|.-++.|. ..+.+.. .+|.++++.+++ ++++...|+.++-
T Consensus 128 elLp~L~~~L~s~---d~n~~EgA~~AL~KIcEDs---a~~lds~~~~rpl~~mipkfl~f~~h~--spkiRs~A~~cvN 199 (885)
T KOG2023|consen 128 ELLPQLCELLDSP---DYNTCEGAFGALQKICEDS---AQFLDSDVLTRPLNIMIPKFLQFFKHP--SPKIRSHAVGCVN 199 (885)
T ss_pred hHHHHHHHHhcCC---cccccchhHHHHHHHHhhh---HHHHhhhcccCchHHhHHHHHHHHhCC--ChhHHHHHHhhhh
Confidence 3578899999875 4344566788888888765 4555442 477888888754 6888888888774
Q ss_pred HHhcCChhhHHHHH-hc-CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-H-cCCHHHHHHH
Q 010019 245 ASATGNEVVKESYM-EL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-IGIARALVHS 320 (520)
Q Consensus 245 ~~~~~~e~nr~~i~-~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~-~g~l~~Lv~l 320 (520)
..... +-+.++ .. .-++.|..+-+..+++++++.|.+|..|.. .|+. .++ . .+.++-.+..
T Consensus 200 q~i~~---~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle---vr~d---------kl~phl~~IveyML~~ 264 (885)
T KOG2023|consen 200 QFIII---QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE---VRPD---------KLVPHLDNIVEYMLQR 264 (885)
T ss_pred heeec---CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---hcHH---------hcccchHHHHHHHHHH
Confidence 43221 112222 21 233444444333345999999999998874 2221 233 1 2344555554
Q ss_pred HhcCCChhHHHHHHHHHHHhccChhhHHHHHh---cCChHHHHHHHhccCCCC---------------------------
Q 010019 321 LHAGLSSPSLISASIALKAVAVNDEICKSVAE---NGGIDALLRCIDDSGLQG--------------------------- 370 (520)
Q Consensus 321 L~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~---~Ggv~~Ll~lL~~~~~~~--------------------------- 370 (520)
.+.+ |.++.-+||-....+|..+ .|..+.. ...||.|++=|..+ +..
T Consensus 265 tqd~-dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ys-d~D~~LL~~~eeD~~vpDreeDIkPRfhks 341 (885)
T KOG2023|consen 265 TQDV-DENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYS-DDDIILLKNNEEDESVPDREEDIKPRFHKS 341 (885)
T ss_pred ccCc-chhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccc-cccHHHhcCccccccCCchhhhccchhhhc
Confidence 4442 5678888998888888766 5555443 23355555443311 100
Q ss_pred --------------------------cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc--CCCHHHHHHHH
Q 010019 371 --------------------------NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SDDASVLQEVM 422 (520)
Q Consensus 371 --------------------------~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~--~~~~~v~~~a~ 422 (520)
+..+.+-...+|-.||. +.....++.++-+|+.+ +++=.++|.++
T Consensus 342 k~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagv 414 (885)
T KOG2023|consen 342 KEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGV 414 (885)
T ss_pred hhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhH
Confidence 02333334444444432 22223445555555443 34557899999
Q ss_pred HHHHHHhcCCHHHHHHHHhc--CcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhC
Q 010019 423 SIITVLSLRSPENAARAMEA--GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENH 499 (520)
Q Consensus 423 ~aL~nLa~~~~~~~~~i~~~--G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h 499 (520)
-+|..++.+.- +-++.. ..++.+++.|.. ..+-|.+-.||.|...+.. ..+.+..+..-=.+.+++.++...
T Consensus 415 LAlGAIAEGcM---~g~~p~LpeLip~l~~~L~D--KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N 489 (885)
T KOG2023|consen 415 LALGAIAEGCM---QGFVPHLPELIPFLLSLLDD--KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN 489 (885)
T ss_pred HHHHHHHHHHh---hhcccchHHHHHHHHHHhcc--CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc
Confidence 99999986421 111111 136777777744 4677888899999888532 222244444444567788888878
Q ss_pred cchHHHHHHHHHHc
Q 010019 500 EICKDAATDALRDL 513 (520)
Q Consensus 500 ~~~~~~a~aALr~L 513 (520)
+..|..|..|+-.|
T Consensus 490 K~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 490 KKVQEAACSAFATL 503 (885)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877654
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=97.43 E-value=0.014 Score=64.08 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=126.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh---HHHHHhcCCHHHHHHHHhcCC-------hHHHHHHHHHHHHhc
Q 010019 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYMELKIDELILEILSRQR-------NDSIQSLYDAIRVLL 289 (520)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n---r~~i~~~g~i~~Lv~lL~~~~-------~~~~~~a~~aL~~Ls 289 (520)
+..+++|+... -+-...|+-.+..++...+.+ +..+.++=+..-|-++|+++. ...+.-|..+|..+|
T Consensus 8 ~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 8 EKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 44455565433 222335677777776654432 345667766789999999842 155556889999999
Q ss_pred CCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCC
Q 010019 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ 369 (520)
Q Consensus 290 ~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~ 369 (520)
.+++... + ..++ +-||.|++++....+.++..+++.+|..++..++-.+.+++.|+++.|.+.+.+++
T Consensus 86 ~~~~~a~-------~-~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~-- 153 (543)
T PF05536_consen 86 RDPELAS-------S-PQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS-- 153 (543)
T ss_pred CChhhhc-------C-HHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc--
Confidence 9665322 1 1444 24999999999876657889999999999999999999999999999999998732
Q ss_pred CcHHHHHHHHHHHHHhhCCCchHHHHHhcC----CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019 370 GNKTVARICCSLLSKLAGSDSNKSAIIENG----GMDKLIVVSARFSDDASVLQEVMSIITVLSLRS 432 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~g----~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~ 432 (520)
...+.++.+|.++.........--... .++.+-..... .....+-..|..|..+-.+.
T Consensus 154 ---~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~--~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 154 ---FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSS--FHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred ---chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHhcCcC
Confidence 467888888888864432111101111 22333333331 12334556677777776544
No 74
>PRK14707 hypothetical protein; Provisional
Probab=97.41 E-value=0.084 Score=63.87 Aligned_cols=296 Identities=13% Similarity=0.111 Sum_probs=178.1
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~ 268 (520)
++.....+...|+..+.+......-....++..++..|+...+...-... +.+|.......+.-+..+- .-.+..++.
T Consensus 555 ~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~A-a~~LA~~l~~~~~lr~~l~-~q~lan~lN 632 (2710)
T PRK14707 555 DKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEA-VNALAERLVDEPDLRKELD-PVDVTNVLN 632 (2710)
T ss_pred chhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHH-HHHHHHHhccChhhhhhcc-HHHHHHHHh
Confidence 44555556667777665543334445567888999999888776555444 4444443344444444432 234566777
Q ss_pred HHhcCCh-HHHHHHHHHH-HHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHH-HhccChh
Q 010019 269 ILSRQRN-DSIQSLYDAI-RVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK-AVAVNDE 345 (520)
Q Consensus 269 lL~~~~~-~~~~~a~~aL-~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~-~La~~~e 345 (520)
.|..... +.-+.+...| ..|..+...+. .| ..-.+.-+++.|.+.++.+....++..|. .|+....
T Consensus 633 ALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~----------~f-naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~~ 701 (2710)
T PRK14707 633 ALSKWPGTEVCAEVARLLAGRLVGDRLLRK----------TF-NSLDVANALNALSKWPDTPVCAAAAGGMAERLAADPG 701 (2710)
T ss_pred hhhcCCCchHHHHHHHHHHHHhhhchhhHh----------hc-chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcChh
Confidence 7755433 3333333333 23333322111 11 23357788888888887667777777775 4555555
Q ss_pred hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHH
Q 010019 346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSI 424 (520)
Q Consensus 346 ~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~a 424 (520)
-++. ...-+|.-+++.|++.++. .....+...|..-. ..+.-+. -.+..++.-.+..|.++.+++. ++.|..+
T Consensus 702 Lr~a-l~pQ~vAN~LNALSKWP~~---~~Cr~AA~~LA~rL~~~p~l~~-a~~aQevANaLNALSKWPd~~~-C~~AA~a 775 (2710)
T PRK14707 702 LRKE-LNPVDVANALNALSKWPRT---PVCAAVASALAARVVAEPRLRK-AFDAQQVATALNALSKWPDNQA-CAAAANT 775 (2710)
T ss_pred hHhh-cCHHHHHHHHhhhhcCCCc---HHHHHHHHHHHHHHhcChhhhh-hcCHHHHHHHHHHhhcCCCchH-HHHHHHH
Confidence 5544 4445678889999998775 45555555554433 3344333 3455678888888988876555 4555555
Q ss_pred HHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcc---
Q 010019 425 ITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEI--- 501 (520)
Q Consensus 425 L~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~--- 501 (520)
|+.=-.+++..+..+- .-.+...++.|++.|..... +.|+.+|..-..+.+..+..|-..++...| .++.+-|+
T Consensus 776 LA~rLa~~~~Lr~aL~-pQ~vAn~LNALSKWPe~~~C-r~AA~~LA~rLa~dp~Lr~af~AQ~VANaL-NALSKWPd~~~ 852 (2710)
T PRK14707 776 LAERQLREPDVRDVLK-PREMTNALNALSKWPDTPAC-AAAASALAARVADDPRLREAFDVQHVATVL-NAMSKWPDNAV 852 (2710)
T ss_pred HHHHHhhCcchhhhcC-HHHHHHHHHHhhcCCCchHH-HHHHHHHHHHHhcChhHHHhcCHHHHHHHH-HHhccCCCchH
Confidence 5532235666655442 33466778889999876654 566666665557789999998888998888 45566664
Q ss_pred hHHHH
Q 010019 502 CKDAA 506 (520)
Q Consensus 502 ~~~~a 506 (520)
|...+
T Consensus 853 Cr~AA 857 (2710)
T PRK14707 853 CAAAA 857 (2710)
T ss_pred HHHHH
Confidence 55443
No 75
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.36 E-value=0.0094 Score=54.12 Aligned_cols=138 Identities=15% Similarity=0.204 Sum_probs=108.1
Q ss_pred hHHHHHhcCChHHHHHHHhccCCC--CcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHH
Q 010019 346 ICKSVAENGGIDALLRCIDDSGLQ--GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS 423 (520)
Q Consensus 346 ~~~~i~~~Ggv~~Ll~lL~~~~~~--~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~ 423 (520)
+...+...||+..|++++.++.+. ...++...++.++..|..++-..-..++...+..++...+....++.+++.+++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 345788999999999999886531 113788899999999987665444566667788999999865558999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHh
Q 010019 424 IITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLS 485 (520)
Q Consensus 424 aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~ 485 (520)
.|-+++..++.....+.++=-++.++..|+. .++.+|.+|..+|..|-.+ +++.++.+.+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999888878877776678999999987 6899999999888887655 3444444444
No 76
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.087 Score=59.86 Aligned_cols=300 Identities=14% Similarity=0.119 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhhcccccchhHHh-----cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHH
Q 010019 193 LDSCLKTMALLVHDVQSTETFRT-----GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (520)
Q Consensus 193 ~~~al~~La~l~~~~~~~~~i~~-----~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv 267 (520)
..-+|++|.++...++.-..+.. -|-.+.+...|+.+ .+++++..++.++..+. .+.++-..+...|.+..|+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~-~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR-KHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc-CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHH
Confidence 45688888888877653333332 25567777788764 46889999999887664 4667888899999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh-
Q 010019 268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI- 346 (520)
Q Consensus 268 ~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~- 346 (520)
.+|.+. .+..+-+..+|..|+...+. ++.-++.|++.-+.+.+-..+.......++..|..|..+.-.
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i----------~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~G 1888 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQI----------GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTG 1888 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcCcHH----------HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccC
Confidence 999774 36677788999999976532 345567799999988887655455556677777777643211
Q ss_pred -H-------------HHHHhcCChHHHHHHHhccCCCCcHHHH------HHHHHHHHHhhC--------CCc--------
Q 010019 347 -C-------------KSVAENGGIDALLRCIDDSGLQGNKTVA------RICCSLLSKLAG--------SDS-------- 390 (520)
Q Consensus 347 -~-------------~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~------~~al~aL~~La~--------~~~-------- 390 (520)
+ ..+.+.| -+..+.++....+. ++++ ...-+.+..+++ ++.
T Consensus 1889 PrV~ITL~kFLP~~f~d~~RD~-PEAaVH~fE~T~En--PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEq 1965 (2235)
T KOG1789|consen 1889 PRVTITLIKFLPEIFADSLRDS-PEAAVHMFESTSEN--PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQ 1965 (2235)
T ss_pred CceeeehHHhchHHHHHHHhcC-HHHHHHHHhccCCC--cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchh
Confidence 1 1112222 24444444432222 2222 112222333321 000
Q ss_pred -----------------hHHHHHh------------cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019 391 -----------------NKSAIIE------------NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441 (520)
Q Consensus 391 -----------------~k~~Iv~------------~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~ 441 (520)
+|.-+.+ .|-++.+.++|.+........+--..++-.|...+|..+..+..
T Consensus 1966 sAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~ 2045 (2235)
T KOG1789|consen 1966 SAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPS 2045 (2235)
T ss_pred hcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCC
Confidence 0111111 12355666677643222222233333444455568888999999
Q ss_pred cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHH
Q 010019 442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALR 511 (520)
Q Consensus 442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr 511 (520)
.|.+|.++.+|.-. + ..+-+.|...|..| +.|.-.+..|........+...|..-++--.-|..||.
T Consensus 2046 LGylPK~~~Am~~~-n-~s~P~SaiRVlH~L-sen~~C~~AMA~l~~i~~~m~~mkK~~~~~GLA~Ealk 2112 (2235)
T KOG1789|consen 2046 LGYLPKFCTAMCLQ-N-TSAPRSAIRVLHEL-SENQFCCDAMAQLPCIDGIMKSMKKQPSLMGLAAEALK 2112 (2235)
T ss_pred ccchHHHHHHHHhc-C-CcCcHHHHHHHHHH-hhccHHHHHHhccccchhhHHHHHhcchHHHHHHHHHH
Confidence 99999999999542 2 22336777778777 45677778888765555566666666655445555554
No 77
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.12 Score=51.60 Aligned_cols=277 Identities=9% Similarity=0.088 Sum_probs=151.9
Q ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH--hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 010019 177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR--TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (520)
Q Consensus 177 ~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~--~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (520)
-|+.+|.+. ++.++..|...+.+++.. .. ..+. +...++.+.+++..... ...|+.++.|++.+ +..|
T Consensus 7 elv~ll~~~---sP~v~~~AV~~l~~lt~~-~~-~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~-~~l~ 76 (353)
T KOG2973|consen 7 ELVELLHSL---SPPVRKAAVEHLLGLTGR-GL-QSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQK-EELR 76 (353)
T ss_pred HHHHHhccC---ChHHHHHHHHHHhhcccc-ch-hhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHhh-HHHH
Confidence 356677663 667777777777666543 11 1121 12345666666653211 45677888888654 5567
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhc-CCCh-hHHHH
Q 010019 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA-GLSS-PSLIS 332 (520)
Q Consensus 255 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~-~~~~-~~~~~ 332 (520)
+.++.. .+..++..+-......-...|.+|.||+.+++.-...-...+ .-+..++..++...-. +.+. .-...
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~----~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLT----EKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcc----cccccchHHHHHHHhCcccccccchhH
Confidence 777766 666666666554446777799999999998875331100000 0011334444333322 2221 12344
Q ss_pred HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHH-HHHHHHHHHhhCCCchHHHHHhcCCHHHHHH-----
Q 010019 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA-RICCSLLSKLAGSDSNKSAIIENGGMDKLIV----- 406 (520)
Q Consensus 333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~-~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~----- 406 (520)
.+..+.||+....-+..+.+...+ ..+.+-.+... +..|. ....+.|+|.+........+.. -.+..+..
T Consensus 152 lA~vf~nls~~~~gR~l~~~~k~~--p~~kll~ft~~-~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPl 227 (353)
T KOG2973|consen 152 LAPVFANLSQFEAGRKLLLEPKRF--PDQKLLPFTSE-DSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPL 227 (353)
T ss_pred HHHHHHHHhhhhhhhhHhcchhhh--hHhhhhccccc-chhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhc
Confidence 566677887666666655554422 22222222111 11333 2346777776655555555544 23333333
Q ss_pred -------------------HHh---ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019 407 -------------------VSA---RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (520)
Q Consensus 407 -------------------lL~---~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~ 464 (520)
+|- .-..++.|++.-+-+|.-||. ...-++.+.+.|+.+.+ +-+-++..++.+ +.
T Consensus 228 agpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpil-RElhk~e~ded~-~~ 304 (353)
T KOG2973|consen 228 AGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPIL-RELHKWEEDEDI-RE 304 (353)
T ss_pred CCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHH-HHHhcCCCcHHH-HH
Confidence 331 112468999999999999997 44556666666665554 445445566665 56
Q ss_pred HHHHHHHHhhh
Q 010019 465 SCFMIRNLVAR 475 (520)
Q Consensus 465 A~~aL~nL~~~ 475 (520)
||.-+.++--+
T Consensus 305 ace~vvq~Lv~ 315 (353)
T KOG2973|consen 305 ACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHh
Confidence 77766666433
No 78
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.21 E-value=0.049 Score=57.61 Aligned_cols=209 Identities=12% Similarity=0.007 Sum_probs=119.5
Q ss_pred HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 010019 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (520)
Q Consensus 175 ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (520)
+..|+..|... +..+...+..+|+.+-. .+..+.|+.+|+ +.++.+...++.++..
T Consensus 88 ~~~L~~~L~d~---~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~--~~~p~vR~aal~al~~--------- 143 (410)
T TIGR02270 88 LRSVLAVLQAG---PEGLCAGIQAALGWLGG----------RQAEPWLEPLLA--ASEPPGRAIGLAALGA--------- 143 (410)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHhcCCc----------hHHHHHHHHHhc--CCChHHHHHHHHHHHh---------
Confidence 66677766552 45566666666654321 123456667774 3456666555544432
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHH
Q 010019 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS 334 (520)
Q Consensus 255 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~ 334 (520)
......+.|+.+|+..+..+...|+++|..|-. ...++.|...+.+ .++.+...+.
T Consensus 144 ---r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------------------~~a~~~L~~al~d-~~~~VR~aA~ 199 (410)
T TIGR02270 144 ---HRHDPGPALEAALTHEDALVRAAALRALGELPR--------------------RLSESTLRLYLRD-SDPEVRFAAL 199 (410)
T ss_pred ---hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------------ccchHHHHHHHcC-CCHHHHHHHH
Confidence 111234567777775555666677777775543 2345666666554 4566777777
Q ss_pred HHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019 335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414 (520)
Q Consensus 335 ~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~ 414 (520)
++|..+-. + .++.+++.+.... .. ........+++ +.+.+ ..++.|..+++ +
T Consensus 200 ~al~~lG~-~---------~A~~~l~~~~~~~-g~---~~~~~l~~~la-l~~~~---------~a~~~L~~ll~----d 251 (410)
T TIGR02270 200 EAGLLAGS-R---------LAWGVCRRFQVLE-GG---PHRQRLLVLLA-VAGGP---------DAQAWLRELLQ----A 251 (410)
T ss_pred HHHHHcCC-H---------hHHHHHHHHHhcc-Cc---cHHHHHHHHHH-hCCch---------hHHHHHHHHhc----C
Confidence 77755532 1 1233444433321 11 22222222222 22222 45677777776 3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
+.+++.++++|..+-. -..++.+++.|. +..+.+.|..+++.++.
T Consensus 252 ~~vr~~a~~AlG~lg~-----------p~av~~L~~~l~----d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 252 AATRREALRAVGLVGD-----------VEAAPWCLEAMR----EPPWARLAGEAFSLITG 296 (410)
T ss_pred hhhHHHHHHHHHHcCC-----------cchHHHHHHHhc----CcHHHHHHHHHHHHhhC
Confidence 5588999999886553 347788888884 34588999999999964
No 79
>PRK14707 hypothetical protein; Provisional
Probab=97.20 E-value=0.16 Score=61.72 Aligned_cols=277 Identities=13% Similarity=0.115 Sum_probs=173.5
Q ss_pred hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHH-HHHHHHHhcCCC
Q 010019 215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS-LYDAIRVLLTPD 292 (520)
Q Consensus 215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~-a~~aL~~Ls~~d 292 (520)
+..++...+..|+...+.+.....+...-..+ .++...++.+-.. .+...+..|..-.+ .+-+. |..+-..|..+.
T Consensus 245 ~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl-~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 245 KPQELGNALNALSKWADTPVCAAAASALAERL-VDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH-hhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence 44577778888877766554443333333333 3444444444322 33445555555433 33333 333334454322
Q ss_pred CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHH-HhccChhhHHHHHhcCChHHHHHHHhccCCCCc
Q 010019 293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK-AVAVNDEICKSVAENGGIDALLRCIDDSGLQGN 371 (520)
Q Consensus 293 d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~-~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~ 371 (520)
+-+ .-...-++.-.++.|..-+|..+...++.+|. .|+.+++.++.+- .-|+..+++.|++.++.
T Consensus 323 ~l~-----------~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~-- 388 (2710)
T PRK14707 323 ELC-----------KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDT-- 388 (2710)
T ss_pred hhh-----------hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCc--
Confidence 111 11122356667777887787667777777775 6777888887765 55678889999998876
Q ss_pred HHHHHHHHHHHHHh-hCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019 372 KTVARICCSLLSKL-AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ 450 (520)
Q Consensus 372 ~~v~~~al~aL~~L-a~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~ 450 (520)
.+...+...|..= ...++.+..+ +..++.-++..|.++. +..++..+..+|+.-..++++.++.+--. .+..++.
T Consensus 389 -~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~-~va~~Ln 464 (2710)
T PRK14707 389 -PVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPI-NVTQALD 464 (2710)
T ss_pred -hHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChH-HHHHHHH
Confidence 5677666666543 4555655555 5578888999998886 55678888888887777788887766433 3566677
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcc---hHHHHHHHHHHc
Q 010019 451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEI---CKDAATDALRDL 513 (520)
Q Consensus 451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~---~~~~a~aALr~L 513 (520)
++++.|+++.- ++|+..|..=.++.+++++.|--.++...| .++++||+ |...+...-..|
T Consensus 465 alSKWPd~p~c-~~aa~~La~~l~~~~~l~~a~~~q~~~~~L-~aLSK~Pd~~~c~~A~~~lA~rl 528 (2710)
T PRK14707 465 ALSKWPDTPIC-GQTASALAARLAHERRLRKALKPQEVVIAL-HSLSKWPDTPICAEAASALAERV 528 (2710)
T ss_pred HhhcCCCChhH-HHHHHHHHHHhcccHHHHhhcCHHHHHHHH-HHhhcCCCcHHHHHHHHHHHHHh
Confidence 88999988654 455554444446788899888888888777 56778975 555444333333
No 80
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.05 E-value=0.017 Score=52.46 Aligned_cols=129 Identities=12% Similarity=0.199 Sum_probs=96.9
Q ss_pred HHHHHHcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHH
Q 010019 305 ARRFAKIGIARALVHSLHAGLS-----SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379 (520)
Q Consensus 305 a~~i~~~g~l~~Lv~lL~~~~~-----~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al 379 (520)
|.++...||+..|++.+.+++. .+.+..++.++..|....-......+.--|..++..+..... ++.++..|+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~--d~~i~q~sL 81 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM--DASILQRSL 81 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc--cchHHHHHH
Confidence 5688889999999999999874 356667777777776544434455555556677777775332 458999999
Q ss_pred HHHHHhhCCCchHHHHHhcCC-HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHH
Q 010019 380 SLLSKLAGSDSNKSAIIENGG-MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA 437 (520)
Q Consensus 380 ~aL~~La~~~~~k~~Iv~~g~-l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~ 437 (520)
+.|-++..+....-..++... ++.|+..|+ ..++.++.++.+.+-.|-.+.++..+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq--~~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQ--VSNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHH--cCCHHHHHHHHHHHHHHHhcCChHHH
Confidence 999999977766555555444 799999999 57899999999999999876655443
No 81
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.092 Score=59.29 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=114.1
Q ss_pred HHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHH--HHHHHHhccC
Q 010019 336 ALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMD--KLIVVSARFS 412 (520)
Q Consensus 336 aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~--~Lv~lL~~~~ 412 (520)
+||++. .++++|+.+.+.||...+.+++... +. .+++..+++.|.+++...+.+.......-+. .+-.++.++
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~--~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w- 569 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DN--EELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW- 569 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cc--hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-
Confidence 899999 6889999999999999999999987 43 3899999999999996554443322111222 333345433
Q ss_pred CCHHHHHHHHHHHHHHhcCCHH---------HHHHHHh--------------cCcHHH-HHHHHHhCCCCHHHHHHHHHH
Q 010019 413 DDASVLQEVMSIITVLSLRSPE---------NAARAME--------------AGSGDL-AIQAMLKFPNAQQLQRSSCFM 468 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~---------~~~~i~~--------------~G~i~~-lv~~L~~~~~~~~vqk~A~~a 468 (520)
+..+.-..+++.|+.+..+.++ ....+.+ .....+ +..++. .+..++.+-+|.|+
T Consensus 570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~-~s~~~g~~lWal~t 648 (699)
T KOG3665|consen 570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR-LSKSDGSQLWALWT 648 (699)
T ss_pred chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc-ccCCCchHHHHHHH
Confidence 3457788999999999875332 1111111 111233 444454 34567889999999
Q ss_pred HHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHH
Q 010019 469 IRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATD 508 (520)
Q Consensus 469 L~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~a 508 (520)
+.|++..+++++..+.+.|....+........ -.++...
T Consensus 649 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 687 (699)
T KOG3665|consen 649 IKNVLEQNKEYCKLVRESNGFELIENIRVLSE-VVDVKEE 687 (699)
T ss_pred HHHHHHcChhhhhhhHhccchhhhhhcchhHH-HHHHHHH
Confidence 99999889999998999888888877654333 3343333
No 82
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.31 Score=48.73 Aligned_cols=254 Identities=13% Similarity=0.143 Sum_probs=150.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH-hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhh
Q 010019 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS 299 (520)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~ 299 (520)
-++++|. +.++.++..|..-+..+... ..+...- ..-.++.|.+++..... .+.|+.+|.|++.+..-+
T Consensus 7 elv~ll~--~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~---- 76 (353)
T KOG2973|consen 7 ELVELLH--SLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR---- 76 (353)
T ss_pred HHHHHhc--cCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH----
Confidence 4566775 44677777777666665433 2222211 12345667777765432 566888999999765332
Q ss_pred hhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhc------CChHHHHHHHhccCCCCcHH
Q 010019 300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN------GGIDALLRCIDDSGLQGNKT 373 (520)
Q Consensus 300 ~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~------Ggv~~Ll~lL~~~~~~~~~~ 373 (520)
+.+... .+..++..+-.-. ...-.-+|.+|.||+..++.+..+... .|+..+.....+......+
T Consensus 77 ------~~ll~~-~~k~l~~~~~~p~-~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a- 147 (353)
T KOG2973|consen 77 ------KKLLQD-LLKVLMDMLTDPQ-SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYA- 147 (353)
T ss_pred ------HHHHHH-HHHHHHHHhcCcc-cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccccccc-
Confidence 345443 5566666554322 345567899999999887776654421 3344444433332221111
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCC-CHHHH-HHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHH
Q 010019 374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD-DASVL-QEVMSIITVLSLRSPENAARAMEAGSGDLAIQA 451 (520)
Q Consensus 374 v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~-~~~v~-~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~ 451 (520)
=...-..++.||+.....|..+.+...+ ..+-+..+.. +..|+ ...+++|.|.|+.. .+...++.. .+..+..+
T Consensus 148 ~f~ylA~vf~nls~~~~gR~l~~~~k~~--p~~kll~ft~~~s~vRr~GvagtlkN~cFd~-~~h~~lL~e-~~~lLp~i 223 (353)
T KOG2973|consen 148 EFHYLAPVFANLSQFEAGRKLLLEPKRF--PDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA-KLHEVLLDE-SINLLPAI 223 (353)
T ss_pred chhHHHHHHHHHhhhhhhhhHhcchhhh--hHhhhhcccccchhhhccchHHHHHhhhccc-hhHHHHhcc-hHHHHHHH
Confidence 2356677889999988888887766532 2233322322 44444 45688999999854 444445442 22222222
Q ss_pred ------------------------HH---hCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019 452 ------------------------ML---KFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN 498 (520)
Q Consensus 452 ------------------------L~---~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~ 498 (520)
|. ..-.++.+.+.-.-+|--|++ ...-|..+.+.|+.+++|+.-+.
T Consensus 224 LlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~ 296 (353)
T KOG2973|consen 224 LLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKW 296 (353)
T ss_pred HhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcC
Confidence 21 112467888888888888865 46778999999999999987543
No 83
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.82 E-value=0.2 Score=56.99 Aligned_cols=248 Identities=14% Similarity=0.184 Sum_probs=139.1
Q ss_pred hcCCcHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC----C----hHHHHHHHH
Q 010019 215 TGGGPKLLVNILIDG---NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ----R----NDSIQSLYD 283 (520)
Q Consensus 215 ~~ggi~~Lv~lL~~~---~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~----~----~~~~~~a~~ 283 (520)
++||+..+++.|.+- +...++....++.+..+|. -..||+.+.+.|+++.|++.|+.. . .++.+....
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 468888888887652 2345677777888888774 588999999999999999999631 2 234444444
Q ss_pred HHHHhcCCCC---cchhhhhhchHHHHHH----HcCCHHHHHHHHhcCC---ChhHHHHHHHHHHHhc-cChhhHHHHHh
Q 010019 284 AIRVLLTPDD---DQVVASQVYGYARRFA----KIGIARALVHSLHAGL---SSPSLISASIALKAVA-VNDEICKSVAE 352 (520)
Q Consensus 284 aL~~Ls~~dd---~~v~~~~a~~~a~~i~----~~g~l~~Lv~lL~~~~---~~~~~~~a~~aL~~La-~~~e~~~~i~~ 352 (520)
.+-.|..... .....+. ..... ...-+..|++.+.+.. ++.+....+..|-+|+ .+++..+.+++
T Consensus 194 IiE~ll~ea~~~~~~~~~~~----~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSS----SSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHhhhhhhhcccc----ccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 4444433211 1110000 00000 0012566666666432 3567788899999999 55565555554
Q ss_pred cCChHHHHHHHhccCC--CC-cHHHHHHHHHHHHHhhCC---CchHHHHHhcCCHHHHHHHHhccCC------CHH----
Q 010019 353 NGGIDALLRCIDDSGL--QG-NKTVARICCSLLSKLAGS---DSNKSAIIENGGMDKLIVVSARFSD------DAS---- 416 (520)
Q Consensus 353 ~Ggv~~Ll~lL~~~~~--~~-~~~v~~~al~aL~~La~~---~~~k~~Iv~~g~l~~Lv~lL~~~~~------~~~---- 416 (520)
. .++.++ +....+ .. +.-.+...|.+..++-.+ ...|+.|++.|.+...++.|..|.. +++
T Consensus 270 ~--F~p~l~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~ 346 (802)
T PF13764_consen 270 H--FKPYLD-FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF 346 (802)
T ss_pred H--HHHhcC-hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence 2 233332 121110 01 112223333333333222 2567889999999988888766532 222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 417 ----VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 417 ----v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
-...++..|.-||.+++... .+++.+++ .++..|..-+++..+=.-|=-+|-.|
T Consensus 347 l~~psLp~iL~lL~GLa~gh~~tQ-~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal 404 (802)
T PF13764_consen 347 LSRPSLPYILRLLRGLARGHEPTQ-LLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEAL 404 (802)
T ss_pred hcCCcHHHHHHHHHHHHhcCHHHH-HHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHH
Confidence 23557888888998665444 44556666 55556655554444433444444444
No 84
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.82 E-value=0.0058 Score=49.46 Aligned_cols=88 Identities=20% Similarity=0.275 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHH
Q 010019 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS 393 (520)
Q Consensus 314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~ 393 (520)
||.|++.|.+.+++.+...++.+|+.+- ++ ..++.|+.++.+ +++.|+..++.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~---------~~~~~L~~~l~d----~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DP---------EAIPALIELLKD----EDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HH---------HHHHHHHHHHTS----SSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHcC----CCHHHHHHHHHHHHHhC-------
Confidence 6889999976678889999999888652 11 237889998854 34689999999999873
Q ss_pred HHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010019 394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIIT 426 (520)
Q Consensus 394 ~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~ 426 (520)
...+++.|.+++.. .++..++..|+.+|+
T Consensus 60 ---~~~~~~~L~~~l~~-~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQD-DDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence 33488999999973 346778898988874
No 85
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.72 Score=46.50 Aligned_cols=246 Identities=11% Similarity=0.072 Sum_probs=137.9
Q ss_pred hhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHH-HHHHhcCCCChHHHHHHHHH
Q 010019 164 VNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLL-VNILIDGNEDPEILNSGFAV 242 (520)
Q Consensus 164 ~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~L-v~lL~~~~~~~~v~~~a~~~ 242 (520)
.....++.+|.+|.++...-.. |-++...|.+.|..+..-+.....+..+.-...+ +.-|.... +.-.....+..
T Consensus 119 seillvvNaeilklildcIgge---ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc-ndiaRvRVleL 194 (524)
T KOG4413|consen 119 SEILLVVNAEILKLILDCIGGE---DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC-NDIARVRVLEL 194 (524)
T ss_pred HHHHHHhhhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHH
Confidence 3455577899999999988654 6678888888887765433223444444332221 11111111 11112233444
Q ss_pred HHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHH
Q 010019 243 VAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHS 320 (520)
Q Consensus 243 L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~l 320 (520)
+-.+.+.++..-...-+.|.+..|..-|+...+ -++.+.......|+.. +|.+++. +.|.|..+.+.
T Consensus 195 IieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-----------eHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 195 IIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-----------EHGREFLAQEGLIDLICNI 263 (524)
T ss_pred HHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-----------hhhhhhcchhhHHHHHHHH
Confidence 555556666666677778888888887776444 3444556666666643 3445666 77889999888
Q ss_pred HhcCC-ChhHHHHHH----HHHHHhccChhhHHHHHhcCChHHHHHHHhcc---CCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019 321 LHAGL-SSPSLISAS----IALKAVAVNDEICKSVAENGGIDALLRCIDDS---GLQGNKTVARICCSLLSKLAGSDSNK 392 (520)
Q Consensus 321 L~~~~-~~~~~~~a~----~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~---~~~~~~~v~~~al~aL~~La~~~~~k 392 (520)
+.... ++--.-.+. ..+++++..+ +.+...++.++-.+... .++.+++.+..|..+|+.|.++.+.+
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimd-----vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa 338 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMD-----VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA 338 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhh-----cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh
Confidence 86432 331111111 2233444322 22222222333222211 12234589999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhc-c-CCCHHHHHHHHHHHHHHhc
Q 010019 393 SAIIENGGMDKLIVVSAR-F-SDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~-~-~~~~~v~~~a~~aL~nLa~ 430 (520)
+.+.+.| .|..-.++.+ + .+...-++.+..+|.+++.
T Consensus 339 dlllkTg-ppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 339 DLLLKTG-PPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHhccC-ChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 8887765 4433333322 1 2222346777888888773
No 86
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.47 Score=47.80 Aligned_cols=263 Identities=13% Similarity=0.097 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHhcCChhh----HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHH
Q 010019 233 PEILNSGFAVVAASATGNEVV----KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRF 308 (520)
Q Consensus 233 ~~v~~~a~~~L~~~~~~~e~n----r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i 308 (520)
..+...+|+.++.+..+++.| -..++..|..+.++..+...++++-..|...|..++.-.+.- ..|
T Consensus 96 asVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal----------eai 165 (524)
T KOG4413|consen 96 ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL----------EAI 165 (524)
T ss_pred chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH----------HHh
Confidence 334445666666655554433 234558899999999998777788888999999998754321 245
Q ss_pred HHcCCHHHHHH--HHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010019 309 AKIGIARALVH--SLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (520)
Q Consensus 309 ~~~g~l~~Lv~--lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L 385 (520)
.+...+.++-. +--..+ .-+...+...+-.+. .+++.....-..|-++.|..=|+.. ++ .-|...++.....|
T Consensus 166 FeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eD--tLVianciElvteL 241 (524)
T KOG4413|consen 166 FESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-ED--TLVIANCIELVTEL 241 (524)
T ss_pred cccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cc--eeehhhHHHHHHHH
Confidence 55555554432 222222 223334445554544 6777777777888888887777753 22 36778899999999
Q ss_pred hCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh----cC--CHHH-HHHHHhcCcHHHHHHHHHhCCCC
Q 010019 386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS----LR--SPEN-AARAMEAGSGDLAIQAMLKFPNA 458 (520)
Q Consensus 386 a~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa----~~--~~~~-~~~i~~~G~i~~lv~~L~~~~~~ 458 (520)
+.....++-+.+.|.++.+...+...+.+|--.-.++.....+- .- .++. +..+.- .++-..+... ..+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiE--mnD 317 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIE--MND 317 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhh--cCC
Confidence 98888888899999999999999755555544433333322222 11 1111 111110 1222233332 367
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC---c-chHHHHHHHHHHcC
Q 010019 459 QQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH---E-ICKDAATDALRDLG 514 (520)
Q Consensus 459 ~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h---~-~~~~~a~aALr~Lg 514 (520)
+..+..|.-++.-|- -+.+-.+.++..|-...=+.+++.+ . .-+..+-.||-+..
T Consensus 318 pdaieaAiDalGilG-SnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 318 PDAIEAAIDALGILG-SNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred chHHHHHHHHHHhcc-CCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 888999999999883 4667777777776543333333333 2 12344555555543
No 87
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.55 E-value=0.0052 Score=45.38 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
+.+++.|+++|.+++...++...... ...++.|+.+|++ ++..|+..|||+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d--~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQD--DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTS--SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcC--CCHHHHHHHHHHHhcC
Confidence 57899999999999987777766644 4578888888855 5669999999999875
No 88
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.037 Score=58.72 Aligned_cols=247 Identities=15% Similarity=0.150 Sum_probs=158.4
Q ss_pred hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (520)
Q Consensus 253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~ 332 (520)
-|.-+.+..+.++|+++|..+..-+.-.+...+.|+.. +|+.- ...+.+.|.|..|+.++.+. |...+.+
T Consensus 423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv------~fsnL---~~~fL~~~iIdvl~~~v~sK-DdaLqan 492 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVV------PFSNL---GAGFLEKSIIDVLVNLVMSK-DDALQAN 492 (743)
T ss_pred HHhhccccchHHHHHHHhcCccceeeccchhhhhheee------eccch---HHHHHHhhHHHHHHHHhhcc-hhhhhhc
Confidence 46666677788889988876422222224445555443 33321 11455889999999999854 6678899
Q ss_pred HHHHHHHhccChh--hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC----CCchHHHHHhcCCH----H
Q 010019 333 ASIALKAVAVNDE--ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG----SDSNKSAIIENGGM----D 402 (520)
Q Consensus 333 a~~aL~~La~~~e--~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~----~~~~k~~Iv~~g~l----~ 402 (520)
..|.|+.|..+.+ .+-+....-|+..++++..+. ...|++.++.+|+|+.- +.+.++...+..-. .
T Consensus 493 s~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp----c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 493 SEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP----CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred chhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc----ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 9999999985432 244566777889999988762 24799999999999973 23344444443332 3
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CcHHHHHHHHHh---------------------------
Q 010019 403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDLAIQAMLK--------------------------- 454 (520)
Q Consensus 403 ~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~-G~i~~lv~~L~~--------------------------- 454 (520)
.+++-++ ..+|--.++.|-.|-++++-+.+...-+.+. ..+..+-+.|-.
T Consensus 569 ~l~~k~e--~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 569 RLIDKYE--ENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHH--hcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 4555566 5677777888999998887554444433321 122222222210
Q ss_pred ----------------------C--CCCHHHHHHHHHHHHHHhhh---Ch------hhHHHHHhCCHHHHHHHHHHhC-c
Q 010019 455 ----------------------F--PNAQQLQRSSCFMIRNLVAR---NP------ENRKLLLSNGVEKLIRQAKENH-E 500 (520)
Q Consensus 455 ----------------------~--~~~~~vqk~A~~aL~nL~~~---~~------e~~~~l~~~G~~~lL~~~~~~h-~ 500 (520)
. ..+.+.--++.|.++|+.+. +. |-+..+.+.|+-+.+++..... +
T Consensus 647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl 726 (743)
T COG5369 647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL 726 (743)
T ss_pred cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence 0 12344566788999998532 22 5567788889999998877443 3
Q ss_pred chHHHHHHHHHHcCC
Q 010019 501 ICKDAATDALRDLGL 515 (520)
Q Consensus 501 ~~~~~a~aALr~Lg~ 515 (520)
+..+.+.-||.++.+
T Consensus 727 ~vrek~~taL~~l~l 741 (743)
T COG5369 727 IVREKIGTALENLRL 741 (743)
T ss_pred HHHHHHHHHHHhhhc
Confidence 678889999988754
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.53 E-value=0.0074 Score=48.80 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=65.8
Q ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHH
Q 010019 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN 435 (520)
Q Consensus 356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~ 435 (520)
|+.|++.|... +++.+...++.+|+.+- ....++.|+++++ .+++.|+..++.+|..+- +
T Consensus 1 i~~L~~~l~~~---~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~--~--- 60 (88)
T PF13646_consen 1 IPALLQLLQND---PDPQVRAEAARALGELG----------DPEAIPALIELLK--DEDPMVRRAAARALGRIG--D--- 60 (88)
T ss_dssp HHHHHHHHHTS---SSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCCH--H---
T ss_pred CHHHHHHHhcC---CCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--C---
Confidence 57888988543 24689999999998442 1135899999996 789999999999999763 1
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR 470 (520)
Q Consensus 436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~ 470 (520)
...++.+.++|.. +++..++..|.++|.
T Consensus 61 ------~~~~~~L~~~l~~-~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ------PEAIPALIKLLQD-DDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence 2367888888865 356777888888773
No 90
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.0094 Score=63.02 Aligned_cols=168 Identities=10% Similarity=0.046 Sum_probs=112.2
Q ss_pred HhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 010019 214 RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293 (520)
Q Consensus 214 ~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd 293 (520)
.+....++|+++|+.+ +.-+..-+...+.|....-+.-+..|.+.|.|..|+.++.+.++..+.+..|+|+.|..+++
T Consensus 428 ~d~~I~elLi~~Ls~P--eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 428 LDYPIVELLIDALSNP--EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred cccchHHHHHHHhcCc--cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 3455688899999742 22222334445555555556678888999999999999998777888889999999999987
Q ss_pred cchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC----hhhHHHHHhcCCh----HHHHHHHhc
Q 010019 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN----DEICKSVAENGGI----DALLRCIDD 365 (520)
Q Consensus 294 ~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~----~e~~~~i~~~Ggv----~~Ll~lL~~ 365 (520)
....| ++.+.-|+..++++... ++-.++..++..|+|+..+ ++.+......--- +.|++.+..
T Consensus 506 ~~ekf--------~~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~ 576 (743)
T COG5369 506 KNEKF--------KFLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE 576 (743)
T ss_pred chhhh--------hhHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh
Confidence 65433 34445678888888654 3346888999999999852 3334333333222 234444443
Q ss_pred cCCCCcHHHHHHHHHHHHHhhCCCchHHHHH
Q 010019 366 SGLQGNKTVARICCSLLSKLAGSDSNKSAII 396 (520)
Q Consensus 366 ~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv 396 (520)
. |+-...+.|..|-++|.++++...++
T Consensus 577 ~----np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 577 N----NPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred c----CchhhhhhHHHHHHHHhccchHHHHH
Confidence 2 33456677888888887777666554
No 91
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.45 E-value=0.4 Score=50.76 Aligned_cols=151 Identities=17% Similarity=0.090 Sum_probs=87.1
Q ss_pred CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh
Q 010019 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297 (520)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~ 297 (520)
+++.++..|... ++.++...++.++.. ...+ .++..|+..|......+...+..+|..+-
T Consensus 55 a~~~L~~aL~~d-~~~ev~~~aa~al~~--~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 55 ATELLVSALAEA-DEPGRVACAALALLA--QEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred HHHHHHHHHhhC-CChhHHHHHHHHHhc--cCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 456666666432 334554444444321 1111 13678888887765567777777776322
Q ss_pred hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI 377 (520)
Q Consensus 298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~ 377 (520)
..+..+.|+.+|+. .++.+...++.++..- .....+.++.+|++ .++.|...
T Consensus 115 ------------~~~a~~~L~~~L~~-~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d----~d~~Vra~ 166 (410)
T TIGR02270 115 ------------GRQAEPWLEPLLAA-SEPPGRAIGLAALGAH-----------RHDPGPALEAALTH----EDALVRAA 166 (410)
T ss_pred ------------chHHHHHHHHHhcC-CChHHHHHHHHHHHhh-----------ccChHHHHHHHhcC----CCHHHHHH
Confidence 12346777777754 3455555555444431 11223577777764 23478888
Q ss_pred HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019 378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428 (520)
Q Consensus 378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL 428 (520)
|+.+|+.|- ....++.|..++. +.++.|+..|.++|..+
T Consensus 167 A~raLG~l~----------~~~a~~~L~~al~--d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 167 ALRALGELP----------RRLSESTLRLYLR--DSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhhc----------cccchHHHHHHHc--CCCHHHHHHHHHHHHHc
Confidence 888887654 2245566776666 66788888888887655
No 92
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.083 Score=58.64 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=153.4
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhH
Q 010019 250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (520)
Q Consensus 250 ~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~ 329 (520)
...-|...++.|+...|+.+...........+..+|.. .++|..- .. ...++++.+++..-...--
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~-------~i~f~~~-----~~--~~v~~~~~s~~~~d~~~~e 558 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAG-------KIDFPGE-----RS--YEVVKPLDSALHNDEKGLE 558 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhh-------hcCCCCC-----ch--hhhhhhhcchhhhhHHHHH
Confidence 44456677888999999988876655555555555551 1222110 00 2356777777654221122
Q ss_pred HHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH-HHHHh-cCCHHHHHH
Q 010019 330 LISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK-SAIIE-NGGMDKLIV 406 (520)
Q Consensus 330 ~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k-~~Iv~-~g~l~~Lv~ 406 (520)
..+.+.+|.||+. ++..+++|.+.-+++.+-+++.. + ++-+++.++..+.||..++..- ..|++ ..+++....
T Consensus 559 n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e--e--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~ 634 (748)
T KOG4151|consen 559 NFEALEALTNLASISESDRQKILKEKALGKIEELMTE--E--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNL 634 (748)
T ss_pred HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc--c--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHH
Confidence 3567889999994 56668888888777776666554 2 3579999999999999766444 45666 456777777
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH-HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019 407 VSARFSDDASVLQEVMSIITVLSLRSPENAAR-AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 407 lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~-i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~ 485 (520)
.+. .......-++++++..++.-....+.. .-...+.+.++.++.. .+.++|......+.|+.....+....+..
T Consensus 635 ~~e--~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~--~~~~~qhrgl~~~ln~~~~~~ei~~~~~~ 710 (748)
T KOG4151|consen 635 NLE--VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD--EDDEIQHRGLVIILNLFEALFEIAEKIFE 710 (748)
T ss_pred HHH--hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC--chhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 776 356667778888888777645445542 2234567778877754 57899999999999987778899999988
Q ss_pred CCHHHHHHHHHHh
Q 010019 486 NGVEKLIRQAKEN 498 (520)
Q Consensus 486 ~G~~~lL~~~~~~ 498 (520)
..+..++......
T Consensus 711 ~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 711 TEVMELLSGLQKL 723 (748)
T ss_pred chHHHHHHHHHHh
Confidence 8888777766444
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.40 E-value=0.076 Score=55.48 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHH
Q 010019 327 SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV 406 (520)
Q Consensus 327 ~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~ 406 (520)
+++...+...++++..+.+..+.+.+.+.--.++..|...... ..=.++|+..++.+..-+.+...+ ..|.+..++.
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~--~~ER~QALkliR~~l~~~~~~~~~-~~~vvralva 115 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN--DVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVA 115 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC--hHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHH
Confidence 6788888999999999999999999998777788888764332 133468999999987554333333 4467788999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019 407 VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 407 lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~ 485 (520)
+.. ..+...+..|..+|+.|+..+|+. +.++||+..+++.+..+ ...+....+.++-.+ -.+|..|+++..
T Consensus 116 iae--~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~l-Ld~p~tR~yl~~ 186 (371)
T PF14664_consen 116 IAE--HEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDG--SFSISESLLDTLLYL-LDSPRTRKYLRP 186 (371)
T ss_pred HHh--CCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHH-hCCcchhhhhcC
Confidence 888 567789999999999999988864 56789999999999763 344777788888887 467888887775
No 94
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.40 E-value=0.0057 Score=45.16 Aligned_cols=54 Identities=22% Similarity=0.105 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019 373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428 (520)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL 428 (520)
.+...|+.+|++++........-.....++.|+.+|+ .+++.|+..||++|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~--d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ--DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcC
Confidence 5789999999999865433333344468999999997 66789999999999875
No 95
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.99 E-value=0.39 Score=54.77 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=121.3
Q ss_pred HHHHHHcCCHHHHHHHHhcCCC----hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC----cHHHHH
Q 010019 305 ARRFAKIGIARALVHSLHAGLS----SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG----NKTVAR 376 (520)
Q Consensus 305 a~~i~~~g~l~~Lv~lL~~~~~----~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~----~~~v~~ 376 (520)
+..+.+.||+..|+.+|....+ .+....++..|.+.+--..|++++++.|+++.|+..+....... ..++.+
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 3456678999999999987443 35666677777778877899999999999999999886432221 246777
Q ss_pred HHHHHHHHhhC---CCchHH--HHHhcCC--------HHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019 377 ICCSLLSKLAG---SDSNKS--AIIENGG--------MDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPENAARAME 441 (520)
Q Consensus 377 ~al~aL~~La~---~~~~k~--~Iv~~g~--------l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~ 441 (520)
..+.++..|.. .+.... ......+ +..+++.+... ..++.+.+..+.+|-.|+.++++..+.+++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 77777776642 111111 1111222 66666666532 246899999999999999999998888875
Q ss_pred cCcHHHHHHH--HH-hCCCCHHHHHHH-HHHHHHHhhhC---hhhHHHHHhCCHHHHHHHHHHhC-cch
Q 010019 442 AGSGDLAIQA--ML-KFPNAQQLQRSS-CFMIRNLVARN---PENRKLLLSNGVEKLIRQAKENH-EIC 502 (520)
Q Consensus 442 ~G~i~~lv~~--L~-~~~~~~~vqk~A-~~aL~nL~~~~---~e~~~~l~~~G~~~lL~~~~~~h-~~~ 502 (520)
. ....++. +. .++.+..+.-+. |....++ -++ ...+..+++.|+.......+..| |..
T Consensus 270 ~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I-~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 270 H--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGI-PNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred H--HHHhcChhhcccccCchHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence 3 2222221 11 122222222222 2222222 122 36678889999987555555444 643
No 96
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.84 E-value=4.1 Score=45.45 Aligned_cols=250 Identities=17% Similarity=0.174 Sum_probs=137.5
Q ss_pred CcHHHHHHHHHHHHHhhcccccc--hhHHh-cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHH
Q 010019 188 GSKRVLDSCLKTMALLVHDVQST--ETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDE 264 (520)
Q Consensus 188 ~~~~~~~~al~~La~l~~~~~~~--~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~ 264 (520)
..+.+...|+..++++..--... ..++. .| -.|.+.|. .+.++++-.-+.++..++.-+...+-.---.+.+|
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllP 886 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLP 886 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhcc
Confidence 45667777777777764210000 11111 11 12334442 34677776666666655533322222112347899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccCh
Q 010019 265 LILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND 344 (520)
Q Consensus 265 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~ 344 (520)
.|..+|++....++.+....+..+|......++ +|.-+. ..--|+++|+++. .++.+++..++++++.
T Consensus 887 rltPILknrheKVqen~IdLvg~IadrgpE~v~-------aREWMR--IcfeLlelLkahk-K~iRRaa~nTfG~Iak-- 954 (1172)
T KOG0213|consen 887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVS-------AREWMR--ICFELLELLKAHK-KEIRRAAVNTFGYIAK-- 954 (1172)
T ss_pred cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC-------HHHHHH--HHHHHHHHHHHHH-HHHHHHHHhhhhHHHH--
Confidence 999999987778888899999988865433331 233332 3456788888764 6788888888888762
Q ss_pred hhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHH-h-cCCHHHHHHHHhccC-CCHHHHHHH
Q 010019 345 EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAII-E-NGGMDKLIVVSARFS-DDASVLQEV 421 (520)
Q Consensus 345 e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv-~-~g~l~~Lv~lL~~~~-~~~~v~~~a 421 (520)
. -|--+.|..+|..- +.+ +-+...|.+++ -+|+ + +|-...|-.+|+.|. .+..||.-.
T Consensus 955 ----a---IGPqdVLatLlnnL-kvq--eRq~RvcTtva---------IaIVaE~c~pFtVLPalmneYrtPe~nVQnGV 1015 (1172)
T KOG0213|consen 955 ----A---IGPQDVLATLLNNL-KVQ--ERQNRVCTTVA---------IAIVAETCGPFTVLPALMNEYRTPEANVQNGV 1015 (1172)
T ss_pred ----h---cCHHHHHHHHHhcc-hHH--HHHhchhhhhh---------hhhhhhhcCchhhhHHHHhhccCchhHHHHhH
Confidence 1 12233444455432 111 23334444332 1222 2 233455555666553 456788877
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 422 MSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 422 ~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
+.+|+.+-..-.+..+.-+ .-..|.|-.+|.. .|..-..-|+.+|++|+-+
T Consensus 1016 Lkalsf~FeyigemskdYi-yav~PlleDAlmD--rD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKDYI-YAVTPLLEDALMD--RDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHHHHHHHHhhhHH-HHhhHHHHHhhcc--ccHHHHHHHHHHHHHHhcC
Confidence 8888777643222222222 1245677777744 3444444588899999754
No 97
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.83 E-value=0.38 Score=51.43 Aligned_cols=168 Identities=14% Similarity=0.167 Sum_probs=118.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHH
Q 010019 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSA 394 (520)
Q Consensus 315 ~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~ 394 (520)
..+.+++.++. ...+..+...|..|+.+......+....|+..|..++.++....+.++...++.++..|....-..-.
T Consensus 86 ~~i~e~l~~~~-~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGN-NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 44556677665 33455588899999999999999999999999999998864422457888888888887643321112
Q ss_pred HHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 395 Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
.+...++..+....+....+..+...|+..|-++...++...+.+.++--++.++..++. ++..+|..|...|..+..
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~--~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV--SNQRIQTCAIALLNALFR 242 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh--cchHHHHHHHHHHHHHHh
Confidence 222233434444433223456788889999999999888888889888889999999976 578888887777766654
Q ss_pred h-ChhhHHHHHh
Q 010019 475 R-NPENRKLLLS 485 (520)
Q Consensus 475 ~-~~e~~~~l~~ 485 (520)
+ .++-+..+.+
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 4 3344444443
No 98
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.73 E-value=1.8 Score=49.11 Aligned_cols=271 Identities=12% Similarity=0.124 Sum_probs=160.7
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~ 268 (520)
..+++..-..+|+..+.-++...+-.++...|.++.+...+++++.+...+-.++..++. .+ ++..-+..-.||.|++
T Consensus 543 s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~-~~~g~m~e~~iPslis 620 (1005)
T KOG2274|consen 543 SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IA-ANYGPMQERLIPSLIS 620 (1005)
T ss_pred cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HH-HhhcchHHHHHHHHHH
Confidence 456666677888887765544455567778899999888888898777776666666553 22 2233344567999999
Q ss_pred HHhcCCh----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cC
Q 010019 269 ILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VN 343 (520)
Q Consensus 269 lL~~~~~----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~ 343 (520)
+|..... ....-+...|..+.++..+..+ +.+.. -+.|++.+..-...|.+.+.++--+|+.+. ..
T Consensus 621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL~--------~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP--------NLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHcCcccccCchhhHHHHHHHHHHHhcCCCCcc--------HHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 9998652 5555577777766665433221 13332 368888888743336778888888888776 44
Q ss_pred hhhHHHHHhcCChH--HHHHHHhccCCCCcHHHHHHHHHHHHHhh-------C--CCchHHHHHhcCCHHHHHHHHhccC
Q 010019 344 DEICKSVAENGGID--ALLRCIDDSGLQGNKTVARICCSLLSKLA-------G--SDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 344 ~e~~~~i~~~Ggv~--~Ll~lL~~~~~~~~~~v~~~al~aL~~La-------~--~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
.+....-...+|.. -++..+..-.+. +.-..++...+.|. + -+.|-..|.+ .++.=|.. .
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp---~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~-----Avisrmq~-a 762 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDP---ETSDSAAAFVGPLVLTLITHASSELGPNLDQILR-----AVISRLQQ-A 762 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCC---ccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHH-----HHHHHHHH-h
Confidence 44433344556655 555555442221 12222333333332 1 1233333433 33333322 3
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHh----cCcHHHHHHHHHhCCCCH-------H---HHHHHHHHHHHHhh-hCh
Q 010019 413 DDASVLQEVMSIITVLSLRSPENAARAME----AGSGDLAIQAMLKFPNAQ-------Q---LQRSSCFMIRNLVA-RNP 477 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~----~G~i~~lv~~L~~~~~~~-------~---vqk~A~~aL~nL~~-~~~ 477 (520)
...++..+-..+++.|...+++..-.+.. -+|-+.+--.|....++. + --+.-|.|+.++.+ +++
T Consensus 763 e~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqhl~~g~ye~kv~i~alc~al~~~~~~ddk 842 (1005)
T KOG2274|consen 763 ETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQHLYFGEYEGKVSIKALCKALQHLISTDDK 842 (1005)
T ss_pred hhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHhhhccCCh
Confidence 47888899999999999888776555443 355566555564433221 2 23557888888864 344
Q ss_pred hh
Q 010019 478 EN 479 (520)
Q Consensus 478 e~ 479 (520)
..
T Consensus 843 rL 844 (1005)
T KOG2274|consen 843 RL 844 (1005)
T ss_pred hh
Confidence 43
No 99
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.70 E-value=1.3 Score=44.62 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=135.1
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhHHHHHhc-CChHH
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAEN-GGIDA 358 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~-Ggv~~ 358 (520)
|...|.+|..+.+.|-. ..++.-+-..++++++.+- +..++-.....+|-|+.+++..+.|-.- .-+..
T Consensus 169 av~cl~~l~~~~e~R~i---------~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 169 AVSCLSNLEFDVEKRKI---------EWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHhhhhhhHHHHHH---------HHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 56677777776543321 2235556778888888765 4567788889999999888876443321 23566
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhhC-CC-chHHHHHhcCCHHHHHHHH-hccCCCHHHHHHHHHHHHHH-------
Q 010019 359 LLRCIDDSGLQGNKTVARICCSLLSKLAG-SD-SNKSAIIENGGMDKLIVVS-ARFSDDASVLQEVMSIITVL------- 428 (520)
Q Consensus 359 Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~-~~k~~Iv~~g~l~~Lv~lL-~~~~~~~~v~~~a~~aL~nL------- 428 (520)
|+.+.+.... ..|.+-||+.+.|+.. .+ ..-....-.|-+.+-+++| ++.-.+++++..--..=..|
T Consensus 240 li~iVk~~~k---eKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 240 LIAIVKERAK---EKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 6777665332 3799999999999985 32 2222333445455555544 43333444433221111111
Q ss_pred hc--------------CCH---------HHHHHHHhcC--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHH
Q 010019 429 SL--------------RSP---------ENAARAMEAG--SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLL 483 (520)
Q Consensus 429 a~--------------~~~---------~~~~~i~~~G--~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l 483 (520)
|. -+| +|...+.+.+ .+..+.+.++....+. ...-||.-|..++.-.||.+..+
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhhHHHHHHhCchHHHHH
Confidence 10 011 3455555443 3567777777654332 33468889999987899999999
Q ss_pred HhCCHHHHHHHHHHhCc--chHHHHHHHHHH
Q 010019 484 LSNGVEKLIRQAKENHE--ICKDAATDALRD 512 (520)
Q Consensus 484 ~~~G~~~lL~~~~~~h~--~~~~~a~aALr~ 512 (520)
...|+-..|..++ +|+ +..-+|-.|+..
T Consensus 396 ~Kyg~k~~im~L~-nh~d~~VkfeAl~a~q~ 425 (432)
T COG5231 396 SKYGVKEIIMNLI-NHDDDDVKFEALQALQT 425 (432)
T ss_pred HHhhhHHHHHHHh-cCCCchhhHHHHHHHHH
Confidence 9999999999988 675 456677766654
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.70 E-value=0.79 Score=52.56 Aligned_cols=209 Identities=13% Similarity=0.094 Sum_probs=135.4
Q ss_pred HhcCCHHHHHHHHhcCChHHHHHHHHHHH--HhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC--ChhHHHHH
Q 010019 258 MELKIDELILEILSRQRNDSIQSLYDAIR--VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISA 333 (520)
Q Consensus 258 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~--~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~--~~~~~~~a 333 (520)
...|+.|.++++|++...++..- .-.|+ -|+.|+.+++ .+++.+|-.-.+..|..++ +++-..-+
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpi-LVFIWAKILAvD~SCQ~----------dLvKe~g~~YF~~vL~~~~~~~~Eqrtma 577 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPI-LVFIWAKILAVDPSCQA----------DLVKENGYKYFLQVLDPSQAIPPEQRTMA 577 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhh-HHHHHHHHHhcCchhHH----------HHHhccCceeEEEEecCcCCCCHHHHHHH
Confidence 45699999999999875444333 22232 4788877766 6887777777777776633 34556667
Q ss_pred HHHHHHhccChh-hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhcc
Q 010019 334 SIALKAVAVNDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARF 411 (520)
Q Consensus 334 ~~aL~~La~~~e-~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~ 411 (520)
+..|+.+..+-- -.+...+.+.+...++.|.+.+ .+-+..=+|-+|+.|=. .++.|-.=++.++.+.|+.+|.
T Consensus 578 AFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~---~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls-- 652 (1387)
T KOG1517|consen 578 AFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP---EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS-- 652 (1387)
T ss_pred HHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc---cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc--
Confidence 778888875422 2334456666777788887642 23455556777888854 4566655577889999999998
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CHHHHHHH------------HhcCcH---HHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 412 SDDASVLQEVMSIITVLSLR----SPENAARA------------MEAGSG---DLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 412 ~~~~~v~~~a~~aL~nLa~~----~~~~~~~i------------~~~G~i---~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
..-|+|+..|+-||..+-.. .+++...+ +|.-.. -.++.+++. +.+-|.++...++..+
T Consensus 653 D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd--gsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 653 DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD--GSPLVRTEVVVALSHF 730 (1387)
T ss_pred CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc--cchHHHHHHHHHHHHH
Confidence 56899999999999988653 23332222 111111 244445544 4577777788888888
Q ss_pred hhhChhhHHHHH
Q 010019 473 VARNPENRKLLL 484 (520)
Q Consensus 473 ~~~~~e~~~~l~ 484 (520)
+.++..+...+.
T Consensus 731 ~~g~~~~~~~va 742 (1387)
T KOG1517|consen 731 VVGYVSHLKVVA 742 (1387)
T ss_pred HHhhHHHhHHHh
Confidence 776665544443
No 101
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.60 E-value=3.9 Score=45.58 Aligned_cols=229 Identities=17% Similarity=0.145 Sum_probs=136.8
Q ss_pred HHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH-hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh---h
Q 010019 178 VCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV---V 253 (520)
Q Consensus 178 Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~---n 253 (520)
|.+.|.. ..++++-..|++|.++.+--.-+.-.- -.+.+|.|..+|++ ...++|+.++..++.+|...++ .
T Consensus 846 LyEylge---eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn--rheKVqen~IdLvg~IadrgpE~v~a 920 (1172)
T KOG0213|consen 846 LYEYLGE---EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGTIADRGPEYVSA 920 (1172)
T ss_pred HHHhcCc---ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh--hHHHHHHHHHHHHHHHHhcCcccCCH
Confidence 4444543 477888777777777654221101110 13668888999974 4689999999999999865443 1
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHH
Q 010019 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (520)
Q Consensus 254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a 333 (520)
|+-+ -+.--|+++|+++..++.++|..++..++. .|+ --+.|..||..-.-.+-+...
T Consensus 921 REWM---RIcfeLlelLkahkK~iRRaa~nTfG~Iak----------------aIG---PqdVLatLlnnLkvqeRq~Rv 978 (1172)
T KOG0213|consen 921 REWM---RICFELLELLKAHKKEIRRAAVNTFGYIAK----------------AIG---PQDVLATLLNNLKVQERQNRV 978 (1172)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----------------hcC---HHHHHHHHHhcchHHHHHhch
Confidence 2222 134568899999888999999998887663 333 234444444432212334445
Q ss_pred HHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCCchHHHHHhcCCHHHHHHHHhcc
Q 010019 334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARF 411 (520)
Q Consensus 334 ~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~lL~~~ 411 (520)
|.++. ++.-.|.| |-..+|=.+|+++ ..++..|+.-.+.+|+-+- ...-.+.-|- -..|.|-.+|.
T Consensus 979 cTtva-IaIVaE~c------~pFtVLPalmneY-rtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlm-- 1046 (1172)
T KOG0213|consen 979 CTTVA-IAIVAETC------GPFTVLPALMNEY-RTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALM-- 1046 (1172)
T ss_pred hhhhh-hhhhhhhc------CchhhhHHHHhhc-cCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhc--
Confidence 55443 22222322 3334555566665 2344567776666665553 1223344443 25677888886
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHH
Q 010019 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM 452 (520)
Q Consensus 412 ~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L 452 (520)
..++.-+.-|+.++.+|+++.+ .-|..+.++.+|
T Consensus 1047 DrD~vhRqta~~~I~Hl~Lg~~-------g~g~eda~iHLL 1080 (1172)
T KOG0213|consen 1047 DRDLVHRQTAMNVIKHLALGVP-------GTGCEDALIHLL 1080 (1172)
T ss_pred cccHHHHHHHHHHHHHHhcCCC-------CcCcHHHHHHHH
Confidence 5567777889999999998532 235566666655
No 102
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=1.8 Score=48.00 Aligned_cols=214 Identities=11% Similarity=0.137 Sum_probs=136.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhh
Q 010019 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS 299 (520)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~ 299 (520)
+.++.+|++ ..+-+...|+.++..++.+.++. +. .+.|.|++=|...+..++.+|..+++-|++-+ ++.
T Consensus 147 ~Dv~tLL~s--skpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDpDp~V~SAAV~VICELArKn-Pkn--- 215 (877)
T KOG1059|consen 147 DDVFTLLNS--SKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKN-PQN--- 215 (877)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-Ccc---
Confidence 446667753 34556667777777777665432 22 36789999998877799999999999999754 221
Q ss_pred hhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019 300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (520)
Q Consensus 300 ~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a 378 (520)
. .-.-|.+..+|...++.=++.......++|+ ..+...+ ..+++|.++|.+...+ .++-+|
T Consensus 216 --------y--L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~Am---SLlYEC 277 (877)
T KOG1059|consen 216 --------Y--LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAM---SLLYEC 277 (877)
T ss_pred --------c--ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHH---HHHHHH
Confidence 1 1245888899987766545566667777777 4444333 3467899999764332 566666
Q ss_pred HHHHHHh--h-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC
Q 010019 379 CSLLSKL--A-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF 455 (520)
Q Consensus 379 l~aL~~L--a-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~ 455 (520)
..++-.- + |.+++-..| + =++..|-.++. .+++.++.-+|-+++-+.-.+|...++- -+.+++.|..
T Consensus 278 vNTVVa~s~s~g~~d~~asi-q-LCvqKLr~fie--dsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~D- 347 (877)
T KOG1059|consen 278 VNTVVAVSMSSGMSDHSASI-Q-LCVQKLRIFIE--DSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDD- 347 (877)
T ss_pred HHHheeehhccCCCCcHHHH-H-HHHHHHhhhhh--cCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhcc-
Confidence 6665333 2 333333322 1 13455555555 5678888888888888887676654432 2566777754
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 010019 456 PNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 456 ~~~~~vqk~A~~aL~nL~ 473 (520)
.|..+.-.|.-++.-|+
T Consensus 348 -kD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 348 -KDESIRLRALDLLYGMV 364 (877)
T ss_pred -CCchhHHHHHHHHHHHh
Confidence 46667777777777665
No 103
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=1.5 Score=49.03 Aligned_cols=226 Identities=12% Similarity=0.116 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhc------------------CChHHHHHHHHHHHHhcCCC
Q 010019 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR------------------QRNDSIQSLYDAIRVLLTPD 292 (520)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~------------------~~~~~~~~a~~aL~~Ls~~d 292 (520)
.+..+.+.|+.+|+.-....+.|-..+ ++..|+.++.. .+..+.+.|...+..|....
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES 381 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence 356777778888877655444443222 34444444443 33344444555555444322
Q ss_pred CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc--cChhhHHH-------------HHhcCChH
Q 010019 293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA--VNDEICKS-------------VAENGGID 357 (520)
Q Consensus 293 d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La--~~~e~~~~-------------i~~~Ggv~ 357 (520)
. .+.| +..|+..|... +++.+.+.+.-+..++ ..++++.. ++....+.
T Consensus 382 N-----------v~~m-----v~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~ 444 (866)
T KOG1062|consen 382 N-----------VRVM-----VKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVN 444 (866)
T ss_pred c-----------HHHH-----HHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHH
Confidence 1 1223 45567777665 6677777777777776 23443322 22334456
Q ss_pred HHHHHHhccC-CC--------------------CcHHHHHHHHHHHHHhh---CCC---chHHHHHhcCCHHHHHHHHhc
Q 010019 358 ALLRCIDDSG-LQ--------------------GNKTVARICCSLLSKLA---GSD---SNKSAIIENGGMDKLIVVSAR 410 (520)
Q Consensus 358 ~Ll~lL~~~~-~~--------------------~~~~v~~~al~aL~~La---~~~---~~k~~Iv~~g~l~~Lv~lL~~ 410 (520)
.++.++.... +. .+..++..+.|+|+--. .++ +.-..+-+...+..|..++..
T Consensus 445 nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~ 524 (866)
T KOG1062|consen 445 NLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMS 524 (866)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHh
Confidence 6777776541 11 11244555556655432 111 111123344567889999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019 411 FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 411 ~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~ 485 (520)
|+.+..++.+++.+|.-|+.|-+....+ ++.++.-... +-+.++|..|.-.=.-+ ..+...++.+++
T Consensus 525 ~~s~~~tk~yal~Al~KLSsr~~s~~~r------i~~lI~~~~~-s~~~elQQRa~E~~~l~-~~~~~lr~siLe 591 (866)
T KOG1062|consen 525 HSSDSTTKGYALTALLKLSSRFHSSSER------IKQLISSYKS-SLDTELQQRAVEYNALF-AKDKHLRKSILE 591 (866)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccHHH------HHHHHHHhcc-cccHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 9889999999999999999875443221 2223333322 23566776665432222 344555555543
No 104
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.36 E-value=0.18 Score=49.55 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHH
Q 010019 373 TVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA 451 (520)
Q Consensus 373 ~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~ 451 (520)
.++..|+.+|.-++ .++..|..+.+..++..++.+|.. ...+.++-.++-+|..+..++|.|.+.+-+.+|+..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~-~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSP-SNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhcc-CCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 45566777887777 689999999999999999999952 4578999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHH
Q 010019 452 MLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 452 L~~~~~~~~vqk~A~~aL~nL 472 (520)
++..+.+..+.-+....|.-.
T Consensus 185 lk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred HccccccHHHhHHHHHHHHHH
Confidence 988777777766666555544
No 105
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.31 E-value=1.2 Score=51.21 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=116.9
Q ss_pred ChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcC-CCChHHHHHHH
Q 010019 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG-NEDPEILNSGF 240 (520)
Q Consensus 162 ~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~-~~~~~v~~~a~ 240 (520)
++=.......-|..|.+++||++....=+.++.-.-.-|-++ |...+.++++.+|...++..|... .-++|-...++
T Consensus 501 GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv--D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaA 578 (1387)
T KOG1517|consen 501 GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV--DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAA 578 (1387)
T ss_pred chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc--CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHH
Confidence 454556667789999999999986321112222111222222 444468899999999988888752 22346666778
Q ss_pred HHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHH
Q 010019 241 AVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALV 318 (520)
Q Consensus 241 ~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv 318 (520)
-+|+.++.......+...+.+.+...++.|+.... -+.+-.|-.|..|=.+- +.||-.+ +.++.+.|.
T Consensus 579 FVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~----------~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 579 FVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY----------DEARWSGRRDNAHEKLI 648 (1387)
T ss_pred HHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc----------chhhhccccccHHHHHH
Confidence 88888887777778888899999999999998533 44455777777776543 2244455 678899999
Q ss_pred HHHhcCCChhHHHHHHHHHHHhcc
Q 010019 319 HSLHAGLSSPSLISASIALKAVAV 342 (520)
Q Consensus 319 ~lL~~~~~~~~~~~a~~aL~~La~ 342 (520)
.+|+.. -+++...|..||+.+..
T Consensus 649 ~~LsD~-vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 649 LLLSDP-VPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHhcCc-cHHHHHHHHHHHHHHhc
Confidence 999863 47888899999998874
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.28 E-value=3.2 Score=45.27 Aligned_cols=208 Identities=14% Similarity=0.120 Sum_probs=126.7
Q ss_pred CcHHHHHHHHHHHHHhhcccccchhHH---hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh---HHHHHhcC
Q 010019 188 GSKRVLDSCLKTMALLVHDVQSTETFR---TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYMELK 261 (520)
Q Consensus 188 ~~~~~~~~al~~La~l~~~~~~~~~i~---~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n---r~~i~~~g 261 (520)
+.++++-..+++++++.+-.. -.-+ -.|.+|.|..+|++ ...+++..++..++.+|...++. |+-+ .
T Consensus 658 ~ypEvLgsil~Ai~~I~sv~~--~~~mqpPi~~ilP~ltPILrn--kh~Kv~~nti~lvg~I~~~~peyi~~rEWM---R 730 (975)
T COG5181 658 DYPEVLGSILKAICSIYSVHR--FRSMQPPISGILPSLTPILRN--KHQKVVANTIALVGTICMNSPEYIGVREWM---R 730 (975)
T ss_pred ccHHHHHHHHHHHHHHhhhhc--ccccCCchhhccccccHhhhh--hhHHHhhhHHHHHHHHHhcCcccCCHHHHH---H
Confidence 578888888888888764221 1101 24778999999974 45789999999999998654432 2222 1
Q ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010019 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (520)
Q Consensus 262 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La 341 (520)
+.--|++.|++++.++.++|..++..++. .|+-...+..|++-|+. .+-+...|.+++ ++
T Consensus 731 IcfeLvd~Lks~nKeiRR~A~~tfG~Is~----------------aiGPqdvL~~LlnnLkv---qeRq~Rvctsva-I~ 790 (975)
T COG5181 731 ICFELVDSLKSWNKEIRRNATETFGCISR----------------AIGPQDVLDILLNNLKV---QERQQRVCTSVA-IS 790 (975)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhhHHh----------------hcCHHHHHHHHHhcchH---HHHHhhhhhhhh-hh
Confidence 34568899999888999999999887764 33322334444444432 233444555432 11
Q ss_pred cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CCchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQ 419 (520)
Q Consensus 342 ~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~ 419 (520)
.-.+. .|-..+|=.+|+++ +.++..|+.-.+.+++-+-. ....++-+- -..|.|-.+|. ..++.-+.
T Consensus 791 iVae~------cgpfsVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAlt--DrD~vhRq 859 (975)
T COG5181 791 IVAEY------CGPFSVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALT--DRDPVHRQ 859 (975)
T ss_pred hhHhh------cCchhhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhc--ccchHHHH
Confidence 11122 24345555667765 33455677766666554431 122233332 24566777887 55777788
Q ss_pred HHHHHHHHHhcCCH
Q 010019 420 EVMSIITVLSLRSP 433 (520)
Q Consensus 420 ~a~~aL~nLa~~~~ 433 (520)
-|..++..|+++.+
T Consensus 860 ta~nvI~Hl~Lnc~ 873 (975)
T COG5181 860 TAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHhcCCC
Confidence 89999999988643
No 107
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.16 E-value=0.21 Score=46.53 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCCh-hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC-----CCCcHHHHHHHHHHHHHhhC
Q 010019 314 ARALVHSLHAGLSS-PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG-----LQGNKTVARICCSLLSKLAG 387 (520)
Q Consensus 314 l~~Lv~lL~~~~~~-~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~-----~~~~~~v~~~al~aL~~La~ 387 (520)
...++..+++.+.. ..+.+.-..|+. ...+..+.+++.||+..|+++|.... ...+..+...++.+|+.|..
T Consensus 68 p~~~i~~L~~~~~~~~~L~~L~v~Lrt--~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTSKILKSLRVSLRT--NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HHHHHHHHHHHHHH--S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcc--CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 45566666655422 233333333332 23356888999999999999986532 11235788999999999998
Q ss_pred CCchHHHHHh-cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 388 SDSNKSAIIE-NGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 388 ~~~~k~~Iv~-~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
+..+...+++ .+++..|+..|. +.+..++..++-.|+.+|.
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~--s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLD--SPNIKTRKLALEILAALCL 187 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT----TTSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCcHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHC
Confidence 8888887766 567899999997 7889999999999999884
No 108
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.15 E-value=0.34 Score=47.72 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcH
Q 010019 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPK 220 (520)
Q Consensus 142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~ 220 (520)
+...+..||+.|+-+|=- .++.|..+.+..++..|+++|+.. ..+.++..++.+|.+++-|. .+...|-+.+|+.
T Consensus 104 ~~~li~~aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~ 179 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLS 179 (257)
T ss_pred hhHHHHHHHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH
Confidence 344567788999998886 899999999999999999999543 36788888999986665454 4466777889999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHh
Q 010019 221 LLVNILIDGNEDPEILNSGFAVVAASA 247 (520)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~ 247 (520)
.+++++++.+.+.++....+..|....
T Consensus 180 ~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 180 TVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHHHHHccccccHHHhHHHHHHHHHHH
Confidence 999999977655555555555544443
No 109
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.79 E-value=0.15 Score=49.11 Aligned_cols=188 Identities=17% Similarity=0.148 Sum_probs=94.9
Q ss_pred CChHHHHHHHHHHHHHhcCC--hhhHHHHHhc--CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHH
Q 010019 231 EDPEILNSGFAVVAASATGN--EVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (520)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~~--e~nr~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~ 306 (520)
.+=+....++.-|..++..+ ......+.+. ..+..++..+.+....+.+.||.++..|+..-.... +
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~------~--- 89 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF------E--- 89 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG------H---
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH------H---
Confidence 34455556666666666554 2333333321 233444444443333788889999998885422211 1
Q ss_pred HHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019 307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (520)
Q Consensus 307 ~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La 386 (520)
.++ ...+|.|+..+.+. ...+...+-.+|..+..+-.... ..+...+..+..+.++.+...++..|..+.
T Consensus 90 ~~~-~~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~--------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 90 PYA-DILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP--------KILLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHH-HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H----------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 122 13578888888764 34566677777777764322111 122344443334456789999999988886
Q ss_pred CCCc-hHHHHHhc----CCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019 387 GSDS-NKSAIIEN----GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439 (520)
Q Consensus 387 ~~~~-~k~~Iv~~----g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i 439 (520)
..-. ....+-.. ..++.+...+. ..++.|++.|-.+++.+...-|+....+
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 4322 11112111 24556666666 6789999999999998876555554444
No 110
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=7.8 Score=42.32 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=137.3
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHH-----HHHHHHHhcCCCC
Q 010019 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS-----LYDAIRVLLTPDD 293 (520)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~-----a~~aL~~Ls~~dd 293 (520)
.+.+.++|. .....-+..+.+.++....+ ..-..+.+.+.+..|-...+.......+. .-.+..+|...-
T Consensus 136 l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~- 210 (569)
T KOG1242|consen 136 LELLLELLT--STKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF- 210 (569)
T ss_pred HHHHHHHhc--cccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC-
Confidence 355666665 23334444445555444322 22345556667777777776543322222 112223333211
Q ss_pred cchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC--hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHH-HHHhccCCCC
Q 010019 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLS--SPSLISASIALKAVAVNDEICKSVAENGGIDALL-RCIDDSGLQG 370 (520)
Q Consensus 294 ~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~--~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll-~lL~~~~~~~ 370 (520)
+-..++.+-.++.+..| ..+...+..+...+. ..+...||+.++ .++....+.
T Consensus 211 ----------------EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~-------~~~~~~aVK~llpsll~~l~~~- 266 (569)
T KOG1242|consen 211 ----------------EPYIVPILPSILTNFGDKINKVREAAVEAAKAIM-------RCLSAYAVKLLLPSLLGSLLEA- 266 (569)
T ss_pred ----------------CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH-------HhcCcchhhHhhhhhHHHHHHH-
Confidence 23456666666666543 344444444444432 112333443322 222211111
Q ss_pred cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc--CCHHHHHHH---Hh----
Q 010019 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL--RSPENAARA---ME---- 441 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~--~~~~~~~~i---~~---- 441 (520)
...-...++..|+.|+.+....-...-...+|.+.+.|. ...+.|++.+-.+|..++. ++++....+ ++
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~--DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~d 344 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW--DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALAD 344 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc--cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcC
Confidence 124456888899988876555555666688999999998 6689999999999988863 344322111 10
Q ss_pred ----------------------cCc----HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--ChhhHHHHHhCCHHHHHH
Q 010019 442 ----------------------AGS----GDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR--NPENRKLLLSNGVEKLIR 493 (520)
Q Consensus 442 ----------------------~G~----i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~--~~e~~~~l~~~G~~~lL~ 493 (520)
+-. ++.+.+.|.. .+..+.|+++-.+-|++.- ++.....++.. ..+-|.
T Consensus 345 p~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~e--Rst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk 421 (569)
T KOG1242|consen 345 PSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAE--RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLK 421 (569)
T ss_pred cccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhh--ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHH
Confidence 111 2233333322 3566779999999999863 34444444432 222233
Q ss_pred HHHHh-CcchHHHHHHHH
Q 010019 494 QAKEN-HEICKDAATDAL 510 (520)
Q Consensus 494 ~~~~~-h~~~~~~a~aAL 510 (520)
..+.. -|+++.+++.||
T Consensus 422 ~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARAL 439 (569)
T ss_pred HHhcCCChhHHHHHHHHH
Confidence 33322 378899999888
No 111
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=8.1 Score=43.06 Aligned_cols=222 Identities=13% Similarity=0.114 Sum_probs=133.1
Q ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 010019 177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKES 256 (520)
Q Consensus 177 ~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~ 256 (520)
-++.+|+++ -+=+...|...+--+.-.++ +++ ..+.|.|++=|. ..++.++..|..++..++.+++.|--.
T Consensus 148 Dv~tLL~ss---kpYvRKkAIl~lykvFLkYP--eAl--r~~FprL~EkLe--DpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 148 DVFTLLNSS---KPYVRKKAILLLYKVFLKYP--EAL--RPCFPRLVEKLE--DPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHhcC---chHHHHHHHHHHHHHHHhhh--HhH--hhhHHHHHHhcc--CCCchHHHHHHHHHHHHHhhCCccccc
Confidence 355566553 33344444444433332221 111 134677777776 468999999999999999988876433
Q ss_pred HHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHH
Q 010019 257 YMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI 335 (520)
Q Consensus 257 i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~ 335 (520)
.-|.+.++|...++ =++--....+.+|+--+ + .+++ ..+|+|.+++++.....++-++..
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE-P------------RLgK-KLieplt~li~sT~AmSLlYECvN 279 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE-P------------RLGK-KLIEPITELMESTVAMSLLYECVN 279 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccC-c------------hhhh-hhhhHHHHHHHhhHHHHHHHHHHH
Confidence 35788888876544 44444566667777543 3 3442 479999999987543345545544
Q ss_pred HHH--HhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccC
Q 010019 336 ALK--AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 336 aL~--~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
++- +++..-.++..- +...++-|+...++.++.+.--+|-+++.++ .++...++ --+.++++|. .
T Consensus 280 TVVa~s~s~g~~d~~as-----iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~--D 347 (877)
T KOG1059|consen 280 TVVAVSMSSGMSDHSAS-----IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLD--D 347 (877)
T ss_pred HheeehhccCCCCcHHH-----HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhc--c
Confidence 432 333211111111 2233333443333344578888888888887 34432222 2457888898 6
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019 413 DDASVLQEVMSIITVLSLRSPENAARAM 440 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~ 440 (520)
.+++|+-.|+-.|..+. +.+|..+|+
T Consensus 348 kD~SIRlrALdLl~gmV--skkNl~eIV 373 (877)
T KOG1059|consen 348 KDESIRLRALDLLYGMV--SKKNLMEIV 373 (877)
T ss_pred CCchhHHHHHHHHHHHh--hhhhHHHHH
Confidence 78999999999999888 456666654
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.55 E-value=0.38 Score=46.37 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=83.5
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh-HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN 391 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~-~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~ 391 (520)
.+..+...+.+- ...+...||.++..|+..-.. ....++ ..++.|+..+.+. +..+...|-.+|..+..+-..
T Consensus 54 ~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~~~~~~----~~~i~~~a~~~L~~i~~~~~~ 127 (228)
T PF12348_consen 54 LLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPPLLKKLGDS----KKFIREAANNALDAIIESCSY 127 (228)
T ss_dssp --HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHGGG-------HHHHHHHHHHHHHHHTTS-H
T ss_pred hHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHccc----cHHHHHHHHHHHHHHHHHCCc
Confidence 445555555432 245788999999999842211 222221 2345566655542 357888899999888865431
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc----CcHHHHHHHHHhCCCCHHHHHHHHH
Q 010019 392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQQLQRSSCF 467 (520)
Q Consensus 392 k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~----G~i~~lv~~L~~~~~~~~vqk~A~~ 467 (520)
...+. ++.+...+. +.++.++..++..|..+....+.....+-.. ...+.+...+.. .++.|.+.|-.
T Consensus 128 ~~~~~----~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D--~~~~VR~~Ar~ 199 (228)
T PF12348_consen 128 SPKIL----LEILSQGLK--SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD--ADPEVREAARE 199 (228)
T ss_dssp --HHH----HHHHHHHTT---S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS--S-HHHHHHHHH
T ss_pred HHHHH----HHHHHHHHh--CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC--CCHHHHHHHHH
Confidence 12221 334444555 6789999999999998876555222222211 245556666644 68899999988
Q ss_pred HHHHHhhhChhhHHHHH
Q 010019 468 MIRNLVARNPENRKLLL 484 (520)
Q Consensus 468 aL~nL~~~~~e~~~~l~ 484 (520)
++..+....|+....++
T Consensus 200 ~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 200 CLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHH-HHH----
T ss_pred HHHHHHHHCCHhhccch
Confidence 88888665566555544
No 113
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=10 Score=42.21 Aligned_cols=299 Identities=11% Similarity=0.101 Sum_probs=158.8
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..++.-+.| .|+--+.=||.-+.+.-+ .+.+..+ +.-|| ++|.+++..+---+..||.-|.-
T Consensus 112 vin~iknDL~s-------rn~~fv~LAL~~I~niG~----re~~ea~--~~DI~---KlLvS~~~~~~vkqkaALclL~L 175 (938)
T KOG1077|consen 112 VINSIKNDLSS-------RNPTFVCLALHCIANIGS----REMAEAF--ADDIP---KLLVSGSSMDYVKQKAALCLLRL 175 (938)
T ss_pred HHHHHHhhhhc-------CCcHHHHHHHHHHHhhcc----HhHHHHh--hhhhH---HHHhCCcchHHHHHHHHHHHHHH
Confidence 34455555555 444445555555544332 2222222 12233 55666532221124455555554
Q ss_pred hhcccccchhHHhcCC-cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-hHHHHHhcCCHHHHHHHHhcCCh-----
Q 010019 203 LVHDVQSTETFRTGGG-PKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-VKESYMELKIDELILEILSRQRN----- 275 (520)
Q Consensus 203 l~~~~~~~~~i~~~gg-i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~-nr~~i~~~g~i~~Lv~lL~~~~~----- 275 (520)
.- . .++++..|+ .+.++.+|... +-.+...+...+..++..+++ .+..+-. ++..|..+....+.
T Consensus 176 ~r-~---spDl~~~~~W~~riv~LL~D~--~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 176 FR-K---SPDLVNPGEWAQRIVHLLDDQ--HMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred Hh-c---CccccChhhHHHHHHHHhCcc--ccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhc
Confidence 32 2 366666544 77888888643 234444555566566655443 2322211 23333333332221
Q ss_pred --------HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC-hhHH----HH-HHHHHHHhc
Q 010019 276 --------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-SPSL----IS-ASIALKAVA 341 (520)
Q Consensus 276 --------~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~-~~~~----~~-a~~aL~~La 341 (520)
=++..++++|.++-..+|+.+ .+ .+. ..++.++...+..+. ..++ ++ ++.-.-+|+
T Consensus 248 Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~-------r~-~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 248 TYYFVPAPWLQVKLLRLLQIYPTPEDPST-------RA-RLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred eeecCCChHHHHHHHHHHHhCCCCCCchH-------HH-HHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 234457778877766665533 11 222 245555555553321 1121 12 222222444
Q ss_pred -cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHH
Q 010019 342 -VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQE 420 (520)
Q Consensus 342 -~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~ 420 (520)
.-|+....+.++ +..|-.+|+.. +. .+.--++..+..|+++....+++-.. .+.++..|+.. .+.++++.
T Consensus 318 ~h~D~e~~ll~~~--~~~Lg~fls~r-E~---NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkte-rDvSirrr 388 (938)
T KOG1077|consen 318 IHLDSEPELLSRA--VNQLGQFLSHR-ET---NIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTE-RDVSIRRR 388 (938)
T ss_pred HHcCCcHHHHHHH--HHHHHHHhhcc-cc---cchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccc-cchHHHHH
Confidence 334444444442 56667777652 32 57788888899998886666666654 88999999854 47899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 421 VMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 421 a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
++-.|..+| +.+|++.|++. +++-|.+ .+..++++-..=++-|+
T Consensus 389 avDLLY~mc--D~~Nak~IV~e-----lLqYL~t--Ad~sireeivlKvAILa 432 (938)
T KOG1077|consen 389 AVDLLYAMC--DVSNAKQIVAE-----LLQYLET--ADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHHHh--chhhHHHHHHH-----HHHHHhh--cchHHHHHHHHHHHHHH
Confidence 999999999 45888888642 4444433 45666655554444443
No 114
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.37 E-value=3.7 Score=40.45 Aligned_cols=206 Identities=13% Similarity=0.013 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHH-HhcCcHHHHHH-HHhhcc--------cCcHHHHHHHHHHHHHhhcccccchh
Q 010019 143 LNEMMGLFDKLIELCGGNEGSVNAAVA-TKNGGVELVCS-ICYKMR--------CGSKRVLDSCLKTMALLVHDVQSTET 212 (520)
Q Consensus 143 ~~~~~~al~~L~~l~~~~~~~~~r~~i-~~~Gaip~Lv~-lL~~~~--------~~~~~~~~~al~~La~l~~~~~~~~~ 212 (520)
++.-..|+.+|.+--.. .+.---.+ -..|.+..|++ +.+-.. ...+...++||.-+..++...+.|..
T Consensus 9 ~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 9 PETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp HHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 34444566665553322 12211122 23577776654 333221 01234478888888888777677899
Q ss_pred HHhcCCcHHHHHHHhcCCCC---hHHHHHHHHHHHHHhcC-ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010019 213 FRTGGGPKLLVNILIDGNED---PEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL 288 (520)
Q Consensus 213 i~~~ggi~~Lv~lL~~~~~~---~~v~~~a~~~L~~~~~~-~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 288 (520)
|+++..+-.|..+|+..+.. +.+.-..+.+++.+... +.+.-..+....++|..++.|..+++-..--|.-.+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999887788888755443 34556678888887653 233345566889999999999987543333355556666
Q ss_pred cCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHh
Q 010019 289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE 352 (520)
Q Consensus 289 s~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~ 352 (520)
-.+|+.-.-+.+..++--.+. ..+..++.-|...+++.+++.....-..|+.++..+..+..
T Consensus 167 L~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 655543221222222222222 35666666666656677889999999999988887776653
No 115
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.11 E-value=3.8 Score=41.89 Aligned_cols=189 Identities=19% Similarity=0.201 Sum_probs=112.5
Q ss_pred CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh
Q 010019 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297 (520)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~ 297 (520)
.++.+++++.+. +..+...+.+.++..- ..-+++.|..+|......++..|..+|..+=.
T Consensus 44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 44 AADELLKLLEDE--DLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hHHHHHHHHcCC--CHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence 456677777643 4555555555543321 12357888888887766677777776664321
Q ss_pred hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCC--------
Q 010019 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ-------- 369 (520)
Q Consensus 298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~-------- 369 (520)
...+++|+.++....+..+...+.++|..+-. + .++..++.++.+....
T Consensus 104 -------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--~--------~a~~~l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 104 -------------PEAVPPLVELLENDENEGVRAAAARALGKLGD--E--------RALDPLLEALQDEDSGSAAAALDA 160 (335)
T ss_pred -------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc--h--------hhhHHHHHHhccchhhhhhhhccc
Confidence 23589999999864566788888888888742 1 1267888888763210
Q ss_pred CcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHH
Q 010019 370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI 449 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv 449 (520)
....+...+...|.. +.+.-.++.+...+. .....|+..+..+|..+...+ ....+.+.
T Consensus 161 ~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~--~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~ 219 (335)
T COG1413 161 ALLDVRAAAAEALGE----------LGDPEAIPLLIELLE--DEDADVRRAAASALGQLGSEN---------VEAADLLV 219 (335)
T ss_pred hHHHHHHHHHHHHHH----------cCChhhhHHHHHHHh--CchHHHHHHHHHHHHHhhcch---------hhHHHHHH
Confidence 000112222222211 222345778888887 556789999999999887643 12345555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Q 010019 450 QAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 450 ~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
..+.. .+..+...++.++..+
T Consensus 220 ~~~~~--~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 220 KALSD--ESLEVRKAALLALGEI 240 (335)
T ss_pred HHhcC--CCHHHHHHHHHHhccc
Confidence 55532 4566666666665554
No 116
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.04 E-value=4 Score=45.79 Aligned_cols=290 Identities=15% Similarity=0.070 Sum_probs=161.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHH--HhhcCcc-cCCccccCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 010019 73 VKENMEDLGMEPTEALQDAIQT--LSLQGVD-LSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGL 149 (520)
Q Consensus 73 V~eni~~~~m~p~eal~~aI~q--f~~qgvd-ls~i~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~a 149 (520)
-..|+.+++..+.|..++.++- |..|-+. ++. ...+.++...++.+...... ...+.+.+.
T Consensus 417 ~l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~---------~n~~~v~~~r~rk~~~~~~~-------~~~~svakt 480 (748)
T KOG4151|consen 417 KLYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSP---------LNWGNVHMSRARKRLSLDED-------PSCESVAKT 480 (748)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccc---------cccchHHHHHHHHhhccCcc-------hhhhHHHHH
Confidence 3456777777777777777765 6666652 111 01123344445554443222 222222222
Q ss_pred HH----HHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH-hh-cccccchhHHhcCCcHHHH
Q 010019 150 FD----KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL-LV-HDVQSTETFRTGGGPKLLV 223 (520)
Q Consensus 150 l~----~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~-l~-~~~~~~~~i~~~ggi~~Lv 223 (520)
.. ++-. |+ ...-|...++.|++..|+++..-. .+......-.+|++ +. .++. -...++++.
T Consensus 481 ~~~~~~E~~a-A~---~K~~~~~~Ik~~~~~aLlrl~~~q---~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~ 547 (748)
T KOG4151|consen 481 VSWAKNEYLA-AK---EKYERAKKIKPGGYEALLRLGQQQ---FEEAKLKWYHALAGKIDFPGER------SYEVVKPLD 547 (748)
T ss_pred HHHHHHHHHh-hh---hHHhcCccccccHHHHHHHHHHHh---chHHHHHHHHHHhhhcCCCCCc------hhhhhhhhc
Confidence 22 2222 33 445577788999999999998754 23333334455552 11 1111 112234444
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhch
Q 010019 224 NILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYG 303 (520)
Q Consensus 224 ~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~ 303 (520)
..+.... ...---..+.++.|+++.++..|+.+.+.-+++.+=+.+-......++.+...+.||......
T Consensus 548 s~~~~d~-~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~--------- 617 (748)
T KOG4151|consen 548 SALHNDE-KGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLL--------- 617 (748)
T ss_pred chhhhhH-HHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHH---------
Confidence 4443211 111113568889999998999999988877777655555443446777788899999875432
Q ss_pred HHHHHHH-cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh-HH-HHHhcCChHHHHHHHhccCCCCcHHHHHHHHH
Q 010019 304 YARRFAK-IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI-CK-SVAENGGIDALLRCIDDSGLQGNKTVARICCS 380 (520)
Q Consensus 304 ~a~~i~~-~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~-~~-~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~ 380 (520)
+.+.+++ ..+++.....+.. .+...-..+++++..++...++ |. ...-..+...++.++.+. +.++++..+.
T Consensus 618 ~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~----~~~~qhrgl~ 692 (748)
T KOG4151|consen 618 YERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE----DDEIQHRGLV 692 (748)
T ss_pred HHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc----hhhhhhhhhh
Confidence 3456665 4667777666654 3333444566667766654444 44 233345667777777753 3478999988
Q ss_pred HHHHhhCC-CchHHHHHhcCCHHHHHH
Q 010019 381 LLSKLAGS-DSNKSAIIENGGMDKLIV 406 (520)
Q Consensus 381 aL~~La~~-~~~k~~Iv~~g~l~~Lv~ 406 (520)
.+.|+.+. .+....++....++.+..
T Consensus 693 ~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 693 IILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred hhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 88886633 333444544444444333
No 117
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.86 E-value=0.95 Score=47.49 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHh-hcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcH
Q 010019 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-KMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220 (520)
Q Consensus 142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~-~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~ 220 (520)
.......++..+...-.. +|..-..+.++|.++.+++.+. ..-....+++...-.++.++|=.+.+.+.+.+.+.++
T Consensus 122 G~~v~s~a~~ivs~~I~n--ePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~ 199 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHN--EPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLD 199 (379)
T ss_pred chHHHHHHHHHHHHHHhc--CCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHH
Confidence 345555666666666665 7888888999999999999887 4434566777666666777665555578888889999
Q ss_pred HHHHHHhc
Q 010019 221 LLVNILID 228 (520)
Q Consensus 221 ~Lv~lL~~ 228 (520)
.+++++.+
T Consensus 200 ~~f~if~s 207 (379)
T PF06025_consen 200 KLFEIFTS 207 (379)
T ss_pred HHHHHhCC
Confidence 99998754
No 118
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=3.6 Score=44.49 Aligned_cols=217 Identities=17% Similarity=0.109 Sum_probs=119.6
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHh-cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHH
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv 267 (520)
..+++.-+-+.+...+.+-.+.+..++ ...++.++.-+. +.++++|..|+.|+........ .--...-.|++..++
T Consensus 221 s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iL 297 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAIL 297 (675)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcc
Confidence 456655555556565544444455543 345666666664 5679999999999988765433 222333456667777
Q ss_pred HHHhcCCh----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CCHHHHHHHHhcCCChhHHHHHHHHHHHhcc
Q 010019 268 EILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAGLSSPSLISASIALKAVAV 342 (520)
Q Consensus 268 ~lL~~~~~----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~ 342 (520)
..+..... +.-+..-..|..++....... . ... ..++.|...+.... .+....+..-+..|-.
T Consensus 298 pc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~----------~-id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 298 PCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKE----------E-IDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYH 365 (675)
T ss_pred cCCCCCccccHHHHHHHHHHHHHHHHhhhhhcc----------c-cchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHh
Confidence 77665432 122222223444443221110 0 111 13455555554322 3344444433333332
Q ss_pred ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHH-HHHHH
Q 010019 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDAS-VLQEV 421 (520)
Q Consensus 343 ~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~-v~~~a 421 (520)
+.-+.-........+.|+.-|++.+ .+|+..++.+|++++.++... +-.+.+..+|+.|..++. +...+
T Consensus 366 ~~p~ql~~h~~~if~tLL~tLsd~s----d~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg 435 (675)
T KOG0212|consen 366 KAPGQLLVHNDSIFLTLLKTLSDRS----DEVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFKEDTKLLEVRG 435 (675)
T ss_pred hCcchhhhhccHHHHHHHHhhcCch----hHHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHhhhhHHHHhhh
Confidence 2222222333344566777777643 379999999999999776544 447778888887776554 44457
Q ss_pred HHHHHHHhc
Q 010019 422 MSIITVLSL 430 (520)
Q Consensus 422 ~~aL~nLa~ 430 (520)
--.++.||.
T Consensus 436 ~lIIRqlC~ 444 (675)
T KOG0212|consen 436 NLIIRQLCL 444 (675)
T ss_pred hHHHHHHHH
Confidence 777788875
No 119
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.78 E-value=3.2 Score=43.25 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=79.6
Q ss_pred hhHHHHHhcCChHHHHHHHhc----cC-----CC---CcHHHHHHHHHHHHHhh-CCCchHHHHHhcC--CHHHHHH-HH
Q 010019 345 EICKSVAENGGIDALLRCIDD----SG-----LQ---GNKTVARICCSLLSKLA-GSDSNKSAIIENG--GMDKLIV-VS 408 (520)
Q Consensus 345 e~~~~i~~~Ggv~~Ll~lL~~----~~-----~~---~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g--~l~~Lv~-lL 408 (520)
-++..+.+.||++.+++++.+ .. +. .+......|+.+|-+.+ .+++|...+.... .++.+.. ++
T Consensus 197 ~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~ 276 (361)
T PF07814_consen 197 WFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLL 276 (361)
T ss_pred cchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHH
Confidence 357778888999999999862 10 01 11235566888888876 5677887776542 2333333 33
Q ss_pred hcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHH---HHHHHHHhC---------CCCHHHHHHHHHHHHHHhhh
Q 010019 409 ARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGD---LAIQAMLKF---------PNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 409 ~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~---~lv~~L~~~---------~~~~~vqk~A~~aL~nL~~~ 475 (520)
... .....+...++..|.||+-++|+.+..+...+... .+...+..- .......--+..++-||+.+
T Consensus 277 ~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 277 RQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred HHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheee
Confidence 321 12234467889999999999988888876654322 222221110 12233444566677777766
Q ss_pred Chhh
Q 010019 476 NPEN 479 (520)
Q Consensus 476 ~~e~ 479 (520)
++.+
T Consensus 357 s~~n 360 (361)
T PF07814_consen 357 SEAN 360 (361)
T ss_pred CccC
Confidence 5544
No 120
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.70 E-value=2.3 Score=41.38 Aligned_cols=151 Identities=14% Similarity=0.219 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCC----hHHHH-HHHHHHHHhcCCCCcchhhhhhchHHHHHHHc
Q 010019 237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR----NDSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFAKI 311 (520)
Q Consensus 237 ~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~----~~~~~-~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~ 311 (520)
+.++..+...++ |++.|..|.++..--.|-..|...+ .+.++ .+.++|..|...||.-| -+.+...
T Consensus 97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eV--------i~fLl~T 167 (293)
T KOG3036|consen 97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEV--------IRFLLTT 167 (293)
T ss_pred HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHH--------HHHHHHh
Confidence 455566655554 7889999999988777777776542 15554 58899999998887544 3456678
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh----hHHHHHhcCChHHHHHHH-hccCCCCcHHHHHHHHHHHHHhh
Q 010019 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDE----ICKSVAENGGIDALLRCI-DDSGLQGNKTVARICCSLLSKLA 386 (520)
Q Consensus 312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e----~~~~i~~~Ggv~~Ll~lL-~~~~~~~~~~v~~~al~aL~~La 386 (520)
+.+|..+..|..|+. ..+.-|...+..+..+|. .|+..-+--.|..++.-| ..-.+.++..+.+.+.++.-+|+
T Consensus 168 eIVPlCLrime~GSe-lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 168 EIVPLCLRIMESGSE-LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred hhHHHHHHHHhcccH-HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 999999999998863 233344444555544443 344333333333322222 11112234578889999998888
Q ss_pred CCCchHHHHHh
Q 010019 387 GSDSNKSAIIE 397 (520)
Q Consensus 387 ~~~~~k~~Iv~ 397 (520)
.++..|.++..
T Consensus 247 dnprar~aL~~ 257 (293)
T KOG3036|consen 247 DNPRARAALRS 257 (293)
T ss_pred CCHHHHHHHHh
Confidence 88877776653
No 121
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.62 E-value=8.9 Score=43.77 Aligned_cols=238 Identities=13% Similarity=0.072 Sum_probs=140.9
Q ss_pred CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHH
Q 010019 229 GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARR 307 (520)
Q Consensus 229 ~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~ 307 (520)
+++.+.+...+++++...+.....+.+.+- -.....+..+.-+.. .+...|++++..-|. .++
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~---~~v----------- 523 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK---VKV----------- 523 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC---cee-----------
Confidence 345666666778888765433223333221 122334444443322 444557777766662 222
Q ss_pred HH--HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010019 308 FA--KIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (520)
Q Consensus 308 i~--~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~ 384 (520)
+. ..+.+..|+++...+. .+++.-..-+|+..+ .+++.- .-.+....|..+.+...+++++ -+...+--++..
T Consensus 524 l~~~~p~ild~L~qlas~~s-~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 524 LLSLQPMILDGLLQLASKSS-DEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDP--QVASLAQDLFEE 599 (1005)
T ss_pred ccccchHHHHHHHHHccccc-HHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHH
Confidence 22 2356777877776543 567777777888777 455543 4456667788888887776553 666666666666
Q ss_pred hhCCCchHHHHHhcCCHHHHHHHHhccCC--CHHHHHHHHHHHHHHhcCCHH-HHHHHHhcCcHHHHHHHHHhCCCCHHH
Q 010019 385 LAGSDSNKSAIIENGGMDKLIVVSARFSD--DASVLQEVMSIITVLSLRSPE-NAARAMEAGSGDLAIQAMLKFPNAQQL 461 (520)
Q Consensus 385 La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~--~~~v~~~a~~aL~nLa~~~~~-~~~~i~~~G~i~~lv~~L~~~~~~~~v 461 (520)
|....+|...+.+ -.+|.+++.|..... .+..+.-+.-.|..+....|. .-+.++ +-+.+++.+.. -|+++..+
T Consensus 600 l~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~t-lHsdD~~t 676 (1005)
T KOG2274|consen 600 LLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKIT-LHSDDHET 676 (1005)
T ss_pred HHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhhe-eecCChHH
Confidence 6643333333333 368999999983221 144455555555544433222 222222 23467777766 69999998
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhCCHH
Q 010019 462 QRSSCFMIRNLVARNPENRKLLLSNGVE 489 (520)
Q Consensus 462 qk~A~~aL~nL~~~~~e~~~~l~~~G~~ 489 (520)
-.+|--++|.+.+.+.++....-..+..
T Consensus 677 lQ~~~EcLra~Is~~~eq~~t~~~e~g~ 704 (1005)
T KOG2274|consen 677 LQNATECLRALISVTLEQLLTWHDEPGH 704 (1005)
T ss_pred HHhHHHHHHHHHhcCHHHHHhhccCCCc
Confidence 8899999999988878877666655433
No 122
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.49 E-value=14 Score=42.61 Aligned_cols=189 Identities=16% Similarity=0.180 Sum_probs=107.4
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh---C
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA---G 387 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La---~ 387 (520)
.+..++.-|.+. -..+.+.++.+|+.|+. +.+.-.. .+..|++=|.... +....+.-..+|+.++ |
T Consensus 175 il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~~~ly~~-----li~~Ll~~L~~~~---q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 175 ILKCLLPQLQSP-RLAVRKKAITALGHLASSCNRDLYVE-----LIEHLLKGLSNRT---QMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred HHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHhccCCCC---chHHHHHHHHHHHHHHHHhc
Confidence 344444444432 24677899999999983 3332222 2344444444322 2234444444555444 3
Q ss_pred CCchHHHHHhcCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC----------
Q 010019 388 SDSNKSAIIENGGMDKLIVVSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP---------- 456 (520)
Q Consensus 388 ~~~~k~~Iv~~g~l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~---------- 456 (520)
+.-. ..+ ...+|.+.+..+.- .++.+++|.++.++-.+-.|+|.+.-....+ .+..+++.+.-.|
T Consensus 246 ~r~~-~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~yd~~eDe 321 (1233)
T KOG1824|consen 246 HRFG-SHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNYDTEEDE 321 (1233)
T ss_pred chhh-ccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCCCCccch
Confidence 2111 111 12466777766321 4578899999999998888888765433211 2223333321111
Q ss_pred ------------------C----CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcch-HHH---HHHHH
Q 010019 457 ------------------N----AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEIC-KDA---ATDAL 510 (520)
Q Consensus 457 ------------------~----~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~-~~~---a~aAL 510 (520)
+ .++|.|.|+-+|..+.+-..|....+.+.=...+|.+.+.+-... -|+ =.++|
T Consensus 322 d~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll 401 (1233)
T KOG1824|consen 322 DAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALL 401 (1233)
T ss_pred hhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1 267999999999888776688888888887778888887776543 232 24555
Q ss_pred HHcC
Q 010019 511 RDLG 514 (520)
Q Consensus 511 r~Lg 514 (520)
+.-+
T Consensus 402 ~qt~ 405 (1233)
T KOG1824|consen 402 KQTR 405 (1233)
T ss_pred HcCC
Confidence 5443
No 123
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=6.2 Score=44.18 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCChhhHHHHHhc---Cc--------HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc
Q 010019 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN---GG--------VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST 210 (520)
Q Consensus 142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~---Ga--------ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~ 210 (520)
.++....|...+.+=|+. +++.-|.++.+. .. +.+|.+.++. +++-+...+.-.++.+-+.+ .
T Consensus 80 ~P~~a~~avnt~~kD~~d-~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d---~~~yvRktaa~~vakl~~~~--~ 153 (734)
T KOG1061|consen 80 KPDLAILAVNTFLKDCED-PNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKD---DDPYVRKTAAVCVAKLFDID--P 153 (734)
T ss_pred CchHHHhhhhhhhccCCC-CCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccC---CChhHHHHHHHHHHHhhcCC--h
Confidence 355555566666665654 456666665552 11 2233444433 45555555555555554333 3
Q ss_pred hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (520)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e 251 (520)
..+...|-++.|-.++. .+++.+...|+.+|..+...+.
T Consensus 154 ~~~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hhccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCC
Confidence 45556677888888886 5678999999999988875554
No 124
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=17 Score=41.14 Aligned_cols=342 Identities=13% Similarity=0.134 Sum_probs=179.1
Q ss_pred ceecccccCCCCCcchhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH-H-hhcCcccC--Cc-----cccCCCCCC-
Q 010019 45 FVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQT-L-SLQGVDLS--GI-----VKCVPGESS- 114 (520)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~isQetfDe~V~eni~~~~m~p~eal~~aI~q-f-~~qgvdls--~i-----~~~~~~~~~- 114 (520)
+|| +++|-+-.+- -.+.|.+|- +.+|.++-+=.-++..--|..+.- | ..-|.+=+ .| +.+..-..+
T Consensus 13 lIr-~IraakT~AE-Er~vI~kE~--a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKR 88 (866)
T KOG1062|consen 13 LIR-AIRAAKTAAE-ERAVIQKEC--AAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKR 88 (866)
T ss_pred HHH-HHHHhhhhHH-HHHHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHH
Confidence 355 5555432111 224455553 445666666555555555555555 2 66777632 22 111100000
Q ss_pred ----------CCCCcHHH-HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHh
Q 010019 115 ----------LKDNPLIQ-SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY 183 (520)
Q Consensus 115 ----------~~~~~~~~-~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~ 183 (520)
+.+|.+.. ....|+.-|.+ +++=.+.-||-.|..+|+. +-.|+ ..|-+.++|+
T Consensus 89 iGYLaamLlLdE~qdvllLltNslknDL~s-------~nq~vVglAL~alg~i~s~---Emard------lapeVe~Ll~ 152 (866)
T KOG1062|consen 89 IGYLAAMLLLDERQDLLLLLTNSLKNDLNS-------SNQYVVGLALCALGNICSP---EMARD------LAPEVERLLQ 152 (866)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhccC-------CCeeehHHHHHHhhccCCH---HHhHH------hhHHHHHHHh
Confidence 12244433 23456666666 6666778899999998873 22233 4577778888
Q ss_pred hcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCH
Q 010019 184 KMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKID 263 (520)
Q Consensus 184 ~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i 263 (520)
.. ++-+..+|+-...-+....+ +++ +.-++..-++|.. .+..+...++..+..+|..+++.-..|.+ .+
T Consensus 153 ~~---~~~irKKA~Lca~r~irK~P---~l~-e~f~~~~~~lL~e--k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~ 221 (866)
T KOG1062|consen 153 HR---DPYIRKKAALCAVRFIRKVP---DLV-EHFVIAFRKLLCE--KHHGVLIAGLHLITELCKISPDALSYFRD--LV 221 (866)
T ss_pred CC---CHHHHHHHHHHHHHHHHcCc---hHH-HHhhHHHHHHHhh--cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HH
Confidence 74 66666555544444433321 221 1123444445542 34566677788888888887777666665 77
Q ss_pred HHHHHHHhcC--------------ChH-HHHHHHHHHHHhcCCCCcchhh-----hhhch---HHHHHHHcCCHHHHHHH
Q 010019 264 ELILEILSRQ--------------RND-SIQSLYDAIRVLLTPDDDQVVA-----SQVYG---YARRFAKIGIARALVHS 320 (520)
Q Consensus 264 ~~Lv~lL~~~--------------~~~-~~~~a~~aL~~Ls~~dd~~v~~-----~~a~~---~a~~i~~~g~l~~Lv~l 320 (520)
+-+|..|+.- .+. ++....+.|+-|-.+|....+. .+... ..+-.+.+=..+.+...
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI 301 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI 301 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 7777777641 113 3334777777776665432110 00000 00000000001112222
Q ss_pred HhcCCChhHHHHHHHHHHHhccChh-hHHHHHhcCCh---------------HHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010019 321 LHAGLSSPSLISASIALKAVAVNDE-ICKSVAENGGI---------------DALLRCIDDSGLQGNKTVARICCSLLSK 384 (520)
Q Consensus 321 L~~~~~~~~~~~a~~aL~~La~~~e-~~~~i~~~Ggv---------------~~Ll~lL~~~~~~~~~~v~~~al~aL~~ 384 (520)
+.-.++.++.+-|+-.|+....+++ |.+-+. ..++ ..++++|++ +|+.+.+.|+.++..
T Consensus 302 ~~I~~~~~LrvlainiLgkFL~n~d~NirYva-Ln~L~r~V~~d~~avqrHr~tIleCL~D----pD~SIkrralELs~~ 376 (866)
T KOG1062|consen 302 MDIRSNSGLRVLAINILGKFLLNRDNNIRYVA-LNMLLRVVQQDPTAVQRHRSTILECLKD----PDVSIKRRALELSYA 376 (866)
T ss_pred HhccCCchHHHHHHHHHHHHhcCCccceeeee-hhhHHhhhcCCcHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHH
Confidence 2212334556666666666554433 322211 1111 235566664 346899999998887
Q ss_pred hhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 385 LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 385 La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
|. +..|...|++ .|+..|. +.++..+..+.+-+..++.
T Consensus 377 lv-n~~Nv~~mv~-----eLl~fL~--~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 377 LV-NESNVRVMVK-----ELLEFLE--SSDEDFKADIASKIAELAE 414 (866)
T ss_pred Hh-ccccHHHHHH-----HHHHHHH--hccHHHHHHHHHHHHHHHH
Confidence 76 4445555544 5777787 5588888888888888874
No 125
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.38 E-value=0.96 Score=42.76 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcC----------------ChHHHHHHHhccCC--CCcHHHHHHHHHHHHHhhCCCch
Q 010019 330 LISASIALKAVAVNDEICKSVAENG----------------GIDALLRCIDDSGL--QGNKTVARICCSLLSKLAGSDSN 391 (520)
Q Consensus 330 ~~~a~~aL~~La~~~e~~~~i~~~G----------------gv~~Ll~lL~~~~~--~~~~~v~~~al~aL~~La~~~~~ 391 (520)
..-+|..|+||+..++.+..+.+.+ .+..|++++..+.+ ....+-......+|.|++..++.
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g 91 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG 91 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence 3456788889988888777665443 34566666665111 00124567888999999999999
Q ss_pred HHHHHhcC--C--HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019 392 KSAIIENG--G--MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441 (520)
Q Consensus 392 k~~Iv~~g--~--l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~ 441 (520)
|..+.+.. . +..|+-.+. +.+..-++-++++|.|+|+....+ ..+..
T Consensus 92 R~~~l~~~~~~~~l~kLl~ft~--~~s~iRR~Gva~~IrNccFd~~~H-~~LL~ 142 (192)
T PF04063_consen 92 RQFFLDPQRYDGPLQKLLPFTE--HKSVIRRGGVAGTIRNCCFDTDSH-EWLLS 142 (192)
T ss_pred HHHHhCchhhhhHHHHHHHHhc--cCcHHHHHHHHHHHHHhhccHhHH-HHhcC
Confidence 99997653 2 445555554 336666778899999999955444 44444
No 126
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.27 E-value=15 Score=40.30 Aligned_cols=258 Identities=15% Similarity=0.140 Sum_probs=136.3
Q ss_pred HHHHHhhcccCcHHHHHHHHHHHHHhhcc---cccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 010019 178 VCSICYKMRCGSKRVLDSCLKTMALLVHD---VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (520)
Q Consensus 178 Lv~lL~~~~~~~~~~~~~al~~La~l~~~---~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (520)
++.+|++. .+.+...|+..++++..- -.....+...|. .|.+.|. .+.++++-.-+.++..+-+-+...+
T Consensus 609 iL~~L~~k---~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 609 ILKLLRSK---PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG--EDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHhcCC---CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC--cccHHHHHHHHHHHHHHhhhhcccc
Confidence 44455553 455666666666665410 000112222221 2233332 3467887777777765544332221
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHH
Q 010019 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS 334 (520)
Q Consensus 255 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~ 334 (520)
-.---.|++|.|..+|++....++.+....+..+|.+....++ +|.-+. ..--|++.|+++ +.++.++|.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~-------~rEWMR--IcfeLvd~Lks~-nKeiRR~A~ 751 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG-------VREWMR--ICFELVDSLKSW-NKEIRRNAT 751 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC-------HHHHHH--HHHHHHHHHHHh-hHHHHHhhh
Confidence 1112358999999999987778888888888888876533221 223322 345577888875 477888888
Q ss_pred HHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccC-
Q 010019 335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFS- 412 (520)
Q Consensus 335 ~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~- 412 (520)
.+++.++. .| |--+.|.-+|.. .+.+ +-+...|..++- ..+.+. |-...+-.+|..|.
T Consensus 752 ~tfG~Is~------ai---GPqdvL~~Llnn-Lkvq--eRq~RvctsvaI--------~iVae~cgpfsVlP~lm~dY~T 811 (975)
T COG5181 752 ETFGCISR------AI---GPQDVLDILLNN-LKVQ--ERQQRVCTSVAI--------SIVAEYCGPFSVLPTLMSDYET 811 (975)
T ss_pred hhhhhHHh------hc---CHHHHHHHHHhc-chHH--HHHhhhhhhhhh--------hhhHhhcCchhhHHHHHhcccC
Confidence 88877752 11 222334444443 2111 233334433321 112222 33445555565543
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
.+..||.-.+.+++.+-.+-.+....-+ .-..|.+-.+|.. .++.-..-|.-.|++|+-+
T Consensus 812 Pe~nVQnGvLkam~fmFeyig~~s~dYv-y~itPlleDAltD--rD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 812 PEANVQNGVLKAMCFMFEYIGQASLDYV-YSITPLLEDALTD--RDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhcc--cchHHHHHHHHHHHHHhcC
Confidence 4567777777777766543222222221 1245666666744 3454455577788888654
No 127
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=4.3 Score=46.87 Aligned_cols=243 Identities=21% Similarity=0.190 Sum_probs=142.9
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHH
Q 010019 239 GFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALV 318 (520)
Q Consensus 239 a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv 318 (520)
+..+|..+...+++|...|.+++++..++..+-+ ++-.....+.+..|-..|...+ ...-+-.|+
T Consensus 662 gwDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkqv-------------hhqelmalV 726 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQV-------------HHQELMALV 726 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCcccc-------------cHHHHHHHH
Confidence 3456666667889999999999999998888843 2333335556666666553322 112356677
Q ss_pred HHHhcCCC-----------hhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhcc------CCCCcH----HHHH
Q 010019 319 HSLHAGLS-----------SPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDS------GLQGNK----TVAR 376 (520)
Q Consensus 319 ~lL~~~~~-----------~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~------~~~~~~----~v~~ 376 (520)
+.|+++-- -..+.+..+++|..- +|-.....+.++||...|+..|-.. .+.++. ++.+
T Consensus 727 dtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfk 806 (2799)
T KOG1788|consen 727 DTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFK 806 (2799)
T ss_pred HHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHH
Confidence 77876320 145678889999987 5666677788999999888877432 122221 1112
Q ss_pred HHHHHHHHhh--CCCchHHHHHhcCCHHHHHHHHhccC----------------------CCHHH--HHHHHHHHHHHhc
Q 010019 377 ICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFS----------------------DDASV--LQEVMSIITVLSL 430 (520)
Q Consensus 377 ~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~lL~~~~----------------------~~~~v--~~~a~~aL~nLa~ 430 (520)
-..+ |-.++ .++.|+..+-..=--+.+.++|+..+ -.|.+ --.||..+-.+-.
T Consensus 807 ilFr-lfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeled 885 (2799)
T KOG1788|consen 807 ILFR-LFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELED 885 (2799)
T ss_pred HHHH-HHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccc
Confidence 2222 22222 45666543211101112222222100 01111 1224444433311
Q ss_pred ---------CCH-HHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC
Q 010019 431 ---------RSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH 499 (520)
Q Consensus 431 ---------~~~-~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h 499 (520)
+.+ ...+.+..+|+...+++.+-. ..+++|-+-..++..++.-+|.+...+...|+..+|.++.--+
T Consensus 886 nifavntPsGqfnpdk~~iynagavRvlirslLl--nypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypf 962 (2799)
T KOG1788|consen 886 NIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLL--NYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPF 962 (2799)
T ss_pred ceeeeccCCCCcCchHhhhcccchhHHHHHHHHh--hChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhh
Confidence 111 134568889999999988765 4678888888888888666899988888889998888775443
No 128
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.07 E-value=8.1 Score=42.19 Aligned_cols=225 Identities=11% Similarity=0.055 Sum_probs=120.3
Q ss_pred hcCcHHHHHHHHhhcccCcHHHHHH---HHHHHHHhhcccccchhHHhcCCcHH----HHHHHhcCCCChHHHHHHHHHH
Q 010019 171 KNGGVELVCSICYKMRCGSKRVLDS---CLKTMALLVHDVQSTETFRTGGGPKL----LVNILIDGNEDPEILNSGFAVV 243 (520)
Q Consensus 171 ~~Gaip~Lv~lL~~~~~~~~~~~~~---al~~La~l~~~~~~~~~i~~~ggi~~----Lv~lL~~~~~~~~v~~~a~~~L 243 (520)
+.+.+|.+-.+|.+.......+... |.+++.+.... .|++. ++.-|.... =..-..++..+
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~----------~aVK~llpsll~~l~~~k--WrtK~aslell 278 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA----------YAVKLLLPSLLGSLLEAK--WRTKMASLELL 278 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc----------chhhHhhhhhHHHHHHHh--hhhHHHHHHHH
Confidence 3456777777776543234455443 44444433322 23333 333332110 01112344445
Q ss_pred HHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhc
Q 010019 244 AASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA 323 (520)
Q Consensus 244 ~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~ 323 (520)
+.++. +..-.-......++|.|.+.|-....++++.+..+|..++.--++. .|.. .+|.|++.+..
T Consensus 279 g~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~-----------dI~~--~ip~Lld~l~d 344 (569)
T KOG1242|consen 279 GAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP-----------DIQK--IIPTLLDALAD 344 (569)
T ss_pred HHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH-----------HHHH--HHHHHHHHhcC
Confidence 44332 2222334445578999999998776788888888888887654442 2332 57888888864
Q ss_pred CCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHH
Q 010019 324 GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK 403 (520)
Q Consensus 324 ~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~ 403 (520)
-. . -...+...|..=+. .. .++.-.+..++-+|.......+..+.+.++..++|++.--+....+. --++.
T Consensus 345 p~-~-~~~e~~~~L~~ttF----V~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la--pfl~~ 415 (569)
T KOG1242|consen 345 PS-C-YTPECLDSLGATTF----VA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA--PFLPS 415 (569)
T ss_pred cc-c-chHHHHHhhcceee----ee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh--hhHHH
Confidence 22 1 12333333333221 11 12333455566666554443445788999999999985432233222 23334
Q ss_pred HHHHHhcc--CCCHHHHHHHHHHHHHHhc
Q 010019 404 LIVVSARF--SDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 404 Lv~lL~~~--~~~~~v~~~a~~aL~nLa~ 430 (520)
|+.-++.- ...|+++.-+..+|+.+-.
T Consensus 416 Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 416 LLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 44333321 2368999999999977654
No 129
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.94 E-value=7.4 Score=37.97 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=101.0
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCChhh-HHHHHhcCCHH
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVV-KESYMELKIDE 264 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~n-r~~i~~~g~i~ 264 (520)
++...++|+..+-.+...-+.+..|+++...-.+-.+|...+ ..+-+.-.++.+|+.+...++.. -..+...+++|
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 344578888888777766666888898887777777775433 23456667788888887544433 33455789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC
Q 010019 265 LILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (520)
Q Consensus 265 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~ 343 (520)
..++.|..+++....-|...+..+-.+|..--=..+.++ .+.. .-.+..++.-|.+.++..+++.+.....+|+.+
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~e---RF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAE---RFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999998765555566666666666543211111111 1211 123444555555555566778888888888877
Q ss_pred hhhHHHH
Q 010019 344 DEICKSV 350 (520)
Q Consensus 344 ~e~~~~i 350 (520)
+..+..+
T Consensus 249 prar~aL 255 (293)
T KOG3036|consen 249 PRARAAL 255 (293)
T ss_pred HHHHHHH
Confidence 7665543
No 130
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=2.3 Score=46.65 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=98.8
Q ss_pred HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHH
Q 010019 347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSII 425 (520)
Q Consensus 347 ~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL 425 (520)
-..|+..|+.-.++.-|.+- =-+|.++|...+..||. .|.... ..+..|+.+++ .+...|+..|.-+|
T Consensus 366 ~~siI~sGACGA~VhGlEDE----f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN--DE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDE----FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN--DEIEVVRLKAIFAL 434 (823)
T ss_pred ccccccccccceeeeechHH----HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 34577788877777766652 13899999999999995 454333 35778999998 66789999999999
Q ss_pred HHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHH
Q 010019 426 TVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDA 505 (520)
Q Consensus 426 ~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~ 505 (520)
..|+.+ -.+....++.+...|... ...+..+.--.|.+. ..+.-.+-.+. +.. +-..+..||..++.
T Consensus 435 ~~Is~~------l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~~-~~~d~~~i~m~---v~~-lL~~L~kyPqDrd~ 501 (823)
T KOG2259|consen 435 TMISVH------LAIREEQLRQILESLEDR--SVDVREALRELLKNA-RVSDLECIDMC---VAH-LLKNLGKYPQDRDE 501 (823)
T ss_pred HHHHHH------heecHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc-CCCcHHHHHHH---HHH-HHHHhhhCCCCcHH
Confidence 988853 122234567777888763 455655544445443 22222222221 222 33556788999999
Q ss_pred HHHHHHHcCCCCCC
Q 010019 506 ATDALRDLGLDDYN 519 (520)
Q Consensus 506 a~aALr~Lg~~~~n 519 (520)
..+++++.|=+..|
T Consensus 502 i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 502 ILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHHhccChh
Confidence 99999999876543
No 131
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=9.6 Score=42.43 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHH
Q 010019 383 SKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL 461 (520)
Q Consensus 383 ~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~v 461 (520)
-+|+ ..|+..+.+.+ ++..|-++|. +..+.++.-|+-.++.|+.. +.....+... .+.++..|++. .|..+
T Consensus 314 I~l~~h~D~e~~ll~~--~~~~Lg~fls--~rE~NiRYLaLEsm~~L~ss--~~s~davK~h-~d~Ii~sLkte-rDvSi 385 (938)
T KOG1077|consen 314 ISLAIHLDSEPELLSR--AVNQLGQFLS--HRETNIRYLALESMCKLASS--EFSIDAVKKH-QDTIINSLKTE-RDVSI 385 (938)
T ss_pred HHHHHHcCCcHHHHHH--HHHHHHHHhh--cccccchhhhHHHHHHHHhc--cchHHHHHHH-HHHHHHHhccc-cchHH
Confidence 3444 34555555554 5777777776 55677777788888888753 3333333333 78888899866 46778
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHh
Q 010019 462 QRSSCFMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 462 qk~A~~aL~nL~~~~~e~~~~l~~ 485 (520)
.+.|.-+|..|+ +.+|.+.+++
T Consensus 386 rrravDLLY~mc--D~~Nak~IV~ 407 (938)
T KOG1077|consen 386 RRRAVDLLYAMC--DVSNAKQIVA 407 (938)
T ss_pred HHHHHHHHHHHh--chhhHHHHHH
Confidence 889999998885 4566666554
No 132
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=92.75 E-value=13 Score=37.98 Aligned_cols=188 Identities=17% Similarity=0.188 Sum_probs=113.5
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (520)
-.++.+++++.+. +..+...+...+..+- ....++.+.++|.. .+..+...+..+|+.+ +++
T Consensus 43 ~~~~~~~~~l~~~---~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d--~~~~vr~~a~~aLg~~--~~~- 104 (335)
T COG1413 43 EAADELLKLLEDE---DLLVRLSAAVALGELG----------SEEAVPLLRELLSD--EDPRVRDAAADALGEL--GDP- 104 (335)
T ss_pred hhHHHHHHHHcCC---CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcC--CCHHHHHHHHHHHHcc--CCh-
Confidence 4677788888763 4555544444444321 12246777888763 4566777777766542 222
Q ss_pred hHHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChh---
Q 010019 253 VKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSP--- 328 (520)
Q Consensus 253 nr~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~--- 328 (520)
..++.|+.+|.. ++..++..+.++|..+-. ..++.+|+..+.......
T Consensus 105 --------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--------------------~~a~~~l~~~l~~~~~~~a~~ 156 (335)
T COG1413 105 --------EAVPPLVELLENDENEGVRAAAARALGKLGD--------------------ERALDPLLEALQDEDSGSAAA 156 (335)
T ss_pred --------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc--------------------hhhhHHHHHHhccchhhhhhh
Confidence 357889999986 344666678888875432 234788888887532110
Q ss_pred --------HHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCC
Q 010019 329 --------SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG 400 (520)
Q Consensus 329 --------~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~ 400 (520)
+...+..+|+. +.+.-.++.+...+... ...+...+..+|..+.... ...
T Consensus 157 ~~~~~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~~~----~~~vr~~Aa~aL~~~~~~~--------~~~ 214 (335)
T COG1413 157 ALDAALLDVRAAAAEALGE----------LGDPEAIPLLIELLEDE----DADVRRAAASALGQLGSEN--------VEA 214 (335)
T ss_pred hccchHHHHHHHHHHHHHH----------cCChhhhHHHHHHHhCc----hHHHHHHHHHHHHHhhcch--------hhH
Confidence 11111111111 22333467777777763 2378888998988877544 244
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 401 MDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 401 l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
.+.+...+. ..+..++..++.+|..+-.
T Consensus 215 ~~~l~~~~~--~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 215 ADLLVKALS--DESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHhcccCc
Confidence 577777777 6678888888888876653
No 133
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.71 E-value=1.1 Score=44.60 Aligned_cols=182 Identities=12% Similarity=0.112 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcC--ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (520)
Q Consensus 315 ~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~G--gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (520)
..+..++...+.. -+--+.-.++-++.++.....+...+ ....+..++....+......+--++++|.|+-.++..+
T Consensus 66 ~~~~~~~~~Wp~~-~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 66 ILLLKILLSWPPE-SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHCCS-CC-C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHhCCCc-cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 4444444444321 12234444444445555444443333 24566666665543344677888999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----CHHHHHHHHHHHHHHhcCCHHHHH-HHHhcCcHHHHHHHHHhCCCCHHHHHHHH
Q 010019 393 SAIIENGGMDKLIVVSARFSD-----DASVLQEVMSIITVLSLRSPENAA-RAMEAGSGDLAIQAMLKFPNAQQLQRSSC 466 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~~~~-----~~~v~~~a~~aL~nLa~~~~~~~~-~i~~~G~i~~lv~~L~~~~~~~~vqk~A~ 466 (520)
..+.+... ..+.+.+..... ++.++-.++..+.|++...-.... .=.....+..+++.+.....++++...+.
T Consensus 145 ~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 145 QLLLSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 88875432 244444443322 577888888888899752111110 00000123455554444446899999999
Q ss_pred HHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019 467 FMIRNLVARNPENRKLLLSNGVEKLIRQAKEN 498 (520)
Q Consensus 467 ~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~ 498 (520)
.||.+|+...+.........|+...+......
T Consensus 224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (268)
T PF08324_consen 224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANK 255 (268)
T ss_dssp HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHcChHHHHHHHHhc
Confidence 99999987666665555557888887766543
No 134
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=7.5 Score=45.02 Aligned_cols=265 Identities=16% Similarity=0.155 Sum_probs=151.5
Q ss_pred HHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC-
Q 010019 152 KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN- 230 (520)
Q Consensus 152 ~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~- 230 (520)
-|--+.|. +.+|...+.++.++..++.++-+ + +-.-..|..+..++...+ .-+...-+..+|+.|+++-
T Consensus 665 cLisllKn--nteNqklFreanGvklilpflin----d-ehRSslLrivscLitvdp---kqvhhqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 665 CLISLLKN--NTENQKLFREANGVKLILPFLIN----D-EHRSSLLRIVSCLITVDP---KQVHHQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHhc--cchhhHHHHhhcCceEEEEeeec----h-HHHHHHHHHHHHHhccCc---ccccHHHHHHHHHHHHhcce
Confidence 35556676 88999999999998888887732 2 122223455555543321 1111122346677776521
Q ss_pred -----CCh----HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-------C--h-----HHHHHHHHHH-H
Q 010019 231 -----EDP----EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-------R--N-----DSIQSLYDAI-R 286 (520)
Q Consensus 231 -----~~~----~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-------~--~-----~~~~~a~~aL-~ 286 (520)
++- .+.+..+.++..+-.-+-..+..|.++|+...|...|-.. + + +...-..+++ .
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 111 2334455666666555566778889999999888887542 1 1 1111111211 1
Q ss_pred HhcCCCCcchhhhhhc--h-HHHHHHHcC---------CHHHHHHHHhc---CCChhHHHHHHHHHHHhccC--------
Q 010019 287 VLLTPDDDQVVASQVY--G-YARRFAKIG---------IARALVHSLHA---GLSSPSLISASIALKAVAVN-------- 343 (520)
Q Consensus 287 ~Ls~~dd~~v~~~~a~--~-~a~~i~~~g---------~l~~Lv~lL~~---~~~~~~~~~a~~aL~~La~~-------- 343 (520)
.+|.+..++..|+..- + ....+.+.| .|..|.++--. +++-..-..||..+..+-.+
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs 894 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS 894 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC
Confidence 2445555555443210 1 112333445 22222222111 11111123566666665321
Q ss_pred ---hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccC-CCHHHH
Q 010019 344 ---DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFS-DDASVL 418 (520)
Q Consensus 344 ---~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~-~~~~v~ 418 (520)
.-.+++|..+|++..+++.+-... +.++-+-+..|-.++ .+|.|....-..|.++.|++.+..+. ++....
T Consensus 895 Gqfnpdk~~iynagavRvlirslLlny----pK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfL 970 (2799)
T KOG1788|consen 895 GQFNPDKQKIYNAGAVRVLIRSLLLNY----PKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFL 970 (2799)
T ss_pred CCcCchHhhhcccchhHHHHHHHHhhC----hHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHh
Confidence 124678999999999998876532 278889999999998 57888888888999999999886543 344455
Q ss_pred HHHHHHHHHHhc
Q 010019 419 QEVMSIITVLSL 430 (520)
Q Consensus 419 ~~a~~aL~nLa~ 430 (520)
-++..++..|+.
T Consensus 971 shalkIvemLga 982 (2799)
T KOG1788|consen 971 SHALKIVEMLGA 982 (2799)
T ss_pred hccHHHHHHHhh
Confidence 666666655553
No 135
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.33 E-value=11 Score=40.10 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=96.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC---C--hhHHHH-HHHHHHH
Q 010019 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL---S--SPSLIS-ASIALKA 339 (520)
Q Consensus 266 Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~---~--~~~~~~-a~~aL~~ 339 (520)
+..+++...++-+-+|.-....++.++|... .+.|.+.++=|.+-+-.+|++.. | +.+... +...|..
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a------~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLac 89 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVA------LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLAC 89 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhh------hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 4445554444545556666667888887643 23456778888899999998643 2 234333 3445566
Q ss_pred hccChhh--HHHHHhcCChHHHHHHHhccCCCC---cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019 340 VAVNDEI--CKSVAENGGIDALLRCIDDSGLQG---NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 340 La~~~e~--~~~i~~~Ggv~~Ll~lL~~~~~~~---~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
.+..+|. ...+++ .||.|+++|+...+.. +-.++..+-.+|..+|+.+.....++..|+++.+.++-..|+
T Consensus 90 FC~~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 90 FCRVPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred HhCChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence 6666663 445554 4899999998764431 245899999999999999999999999999999998766544
No 136
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.16 E-value=4.5 Score=40.89 Aligned_cols=221 Identities=12% Similarity=0.040 Sum_probs=138.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcC-CHHHHHHHHhcC-C-hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cC
Q 010019 237 NSGFAVVAASATGNEVVKESYMELK-IDELILEILSRQ-R-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IG 312 (520)
Q Consensus 237 ~~a~~~L~~~~~~~e~nr~~i~~~g-~i~~Lv~lL~~~-~-~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g 312 (520)
-.|+.++.++.... +-|..+...+ +-..++++++.+ + .+.+=+..-.++-|+.... .++.|-+ ..
T Consensus 167 lfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~----------~aqdi~K~~d 235 (432)
T COG5231 167 LFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE----------CAQDIDKMDD 235 (432)
T ss_pred HHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH----------HHHHHHHHHH
Confidence 35667777776654 4566665444 667888888876 3 2666667767777777542 2334443 25
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHH-------
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS------- 383 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~------- 383 (520)
.+..|+.+.+......+.+-+|+.+.|++. .........-.|-+..-+++|....-. +.++....=..=.
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkys-DEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYS-DEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhhhh
Confidence 678888888865444567778888888875 224455566667677777777543211 1233322111111
Q ss_pred ----------Hh-----hCCC---------chHHHHHhc--CCHHHHHHHHhccCCCHH-HHHHHHHHHHHHhcCCHHHH
Q 010019 384 ----------KL-----AGSD---------SNKSAIIEN--GGMDKLIVVSARFSDDAS-VLQEVMSIITVLSLRSPENA 436 (520)
Q Consensus 384 ----------~L-----a~~~---------~~k~~Iv~~--g~l~~Lv~lL~~~~~~~~-v~~~a~~aL~nLa~~~~~~~ 436 (520)
.| ..+| .|-..+.+. ..+..|.++++ +.++. ...-||.=|..+....|+..
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq--~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ--SNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh--cCCCCceEeeeHhhHHHHHHhCchHH
Confidence 11 1111 122222221 23567788887 33333 45568888888888899999
Q ss_pred HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 437 ~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
..+..-|+-+.++++|. | +++.|.-+|..|+..+.
T Consensus 393 ~vl~Kyg~k~~im~L~n-h-~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 393 AVLSKYGVKEIIMNLIN-H-DDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhhhHHHHHHHhc-C-CCchhhHHHHHHHHHHH
Confidence 99999999999999884 5 57889999988887664
No 137
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.07 E-value=8.1 Score=40.59 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=75.3
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc-hhHHhcCCcHHHHHHHh-cC-CCChHHHHHHHHHHHHHhcC
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILI-DG-NEDPEILNSGFAVVAASATG 249 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~-~~i~~~ggi~~Lv~lL~-~~-~~~~~v~~~a~~~L~~~~~~ 249 (520)
-....|..+++....-.+.+...|+..++.+.+..+.. ..+.++|.++.+++.+. .. ..+.++....-.++..+|.
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL- 184 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL- 184 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-
Confidence 33445556776655455677888899999998776553 45556788888999887 33 3467887777788888886
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhcC
Q 010019 250 NEVVKESYMELKIDELILEILSRQ 273 (520)
Q Consensus 250 ~e~nr~~i~~~g~i~~Lv~lL~~~ 273 (520)
|....+.+.+.+.++.+++++.+.
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCH
Confidence 677889999999999999999764
No 138
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=15 Score=42.81 Aligned_cols=135 Identities=16% Similarity=0.207 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHH
Q 010019 372 KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA 451 (520)
Q Consensus 372 ~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~ 451 (520)
..|.+.|+.-++.+++... ..+++ .++..+++++. ..+++..-..+|-+|+.|+.+.--.-..+ ...++.++..
T Consensus 355 t~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~-p~e~~~aWHgacLaLAELA~rGlLlps~l--~dVvplI~ka 428 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFN-PAEDDSAWHGACLALAELALRGLLLPSLL--EDVVPLILKA 428 (1133)
T ss_pred chhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcC-cCCchhHHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHH
Confidence 4688888888888886543 22222 35556666554 33446666789999999997531111111 1134555555
Q ss_pred H------HhCCCCHHHHHHHHHHHHHHhh-hChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHH
Q 010019 452 M------LKFPNAQQLQRSSCFMIRNLVA-RNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRD 512 (520)
Q Consensus 452 L------~~~~~~~~vqk~A~~aL~nL~~-~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~ 512 (520)
+ -.|+.-..|.-.||.++..++. +++.-.+.++..=+..+|..+.-.- -.|+..|+|||.-
T Consensus 429 L~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 429 LHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 4 1133445577778887777753 4666566677655556665554333 3799999999863
No 139
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.75 E-value=22 Score=38.77 Aligned_cols=163 Identities=14% Similarity=0.014 Sum_probs=89.4
Q ss_pred CHHHHHHHHhcCC---ChhHHHHHHHHHHHhc-cChhh-HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC
Q 010019 313 IARALVHSLHAGL---SSPSLISASIALKAVA-VNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG 387 (520)
Q Consensus 313 ~l~~Lv~lL~~~~---~~~~~~~a~~aL~~La-~~~e~-~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~ 387 (520)
.+.+++......- +-.-...++.|++.+. ..++- ...++ ...+|.+...|.+.. --+...+.++++.+|.
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~----l~vk~ttAwc~g~iad 437 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC----LWVKSTTAWCFGAIAD 437 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce----eehhhHHHHHHHHHHH
Confidence 3555555554321 2233456778888877 33333 34444 345788888887632 2466778888998885
Q ss_pred CCchHHHHHhcCCHHHHHHH-HhccCCCHHHHHHHHHHHHHHhcCCHHHHHH---HHhcCcHHHHHHHHHhC----CCCH
Q 010019 388 SDSNKSAIIENGGMDKLIVV-SARFSDDASVLQEVMSIITVLSLRSPENAAR---AMEAGSGDLAIQAMLKF----PNAQ 459 (520)
Q Consensus 388 ~~~~k~~Iv~~g~l~~Lv~l-L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~---i~~~G~i~~lv~~L~~~----~~~~ 459 (520)
+ ....|--+|-+++.++. +..-.++|.+.-+++|+.-||+.+-++.-.. ++ ..-.+.++..|-.. -++.
T Consensus 438 ~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~ 514 (858)
T COG5215 438 H--VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNES 514 (858)
T ss_pred H--HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccch
Confidence 4 23344445666665553 3223468999999999999998543222211 00 11223333333211 1233
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHH
Q 010019 460 QLQRSSCFMIRNLVARNPENRKLL 483 (520)
Q Consensus 460 ~vqk~A~~aL~nL~~~~~e~~~~l 483 (520)
.....+-.+|..|....++....+
T Consensus 515 n~R~s~fsaLgtli~~~~d~V~~~ 538 (858)
T COG5215 515 NLRVSLFSALGTLILICPDAVSDI 538 (858)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHH
Confidence 444456667776665555544443
No 140
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.70 E-value=0.28 Score=42.43 Aligned_cols=70 Identities=16% Similarity=0.340 Sum_probs=55.3
Q ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
++.|+.+|.... ++.++.-||.=|+.++. .|..|..+-+.|+=+.++++|. ++++.|+.+|+.++.-|..
T Consensus 45 lk~L~~lL~~s~---d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSD---DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHH---HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC---CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 468888996542 35788889999999984 5788888878888899999998 6799999999999887764
No 141
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.58 E-value=4.6 Score=43.58 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=104.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHh
Q 010019 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAV 340 (520)
Q Consensus 264 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~---~~~~~~a~~aL~~L 340 (520)
..+.+++.++++..+..+...|..|+.+- ..++.+....|+..|..++.++.. .+++.....++..|
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~----------~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~el 155 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDP----------TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSEL 155 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccH----------HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 45677788877766666888888888753 346788888999999999998764 35555556666555
Q ss_pred ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQ 419 (520)
Q Consensus 341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~ 419 (520)
....-.....+...+|.....+..... .++.+...|+..|-++..+ +.-++.|.+.--++.|+.-++ ..+..++.
T Consensus 156 mehgvvsW~~~~~~fV~~~a~~V~~~~--~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq--~~n~~i~~ 231 (713)
T KOG2999|consen 156 MEHGVVSWESVSNDFVVSMASYVNAKR--EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ--VSNQRIQT 231 (713)
T ss_pred HhhceeeeeecccHHHHHHHHHHhhhh--hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH--hcchHHHH
Confidence 321111111222233333333332211 1246788999999999855 456677777777899999998 66888888
Q ss_pred HHHHHHHHHhcCCHH
Q 010019 420 EVMSIITVLSLRSPE 434 (520)
Q Consensus 420 ~a~~aL~nLa~~~~~ 434 (520)
.|.+.|-.|..+.|+
T Consensus 232 ~aial~nal~~~a~~ 246 (713)
T KOG2999|consen 232 CAIALLNALFRKAPD 246 (713)
T ss_pred HHHHHHHHHHhhCCh
Confidence 898888888766554
No 142
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.22 E-value=0.94 Score=35.70 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCC
Q 010019 330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG 400 (520)
Q Consensus 330 ~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~ 400 (520)
++.+.||+.+++..+.-.+.+.+.+.++.++++...++- ..+.-.|..+|+-++...+..+.+-+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v---~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV---LSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc---cchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 578999999999887777777778999999998886543 37888999999999999888888877664
No 143
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.10 E-value=12 Score=44.24 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=49.1
Q ss_pred HhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch-HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 351 AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN-KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 351 ~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~-k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
++.+.+|.|.+-|.+. ++ -|+..|+++|..|....-. |.++.+ .++.+.-+|- ..+.-|+..+|..|..++
T Consensus 653 ~seyllPLl~Q~ltD~-EE---~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~--hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDG-EE---AVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLC--HPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HHHHHHHHHHHhccCc-ch---hhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhhee--CchHHHHHHHHHHHHHHH
Confidence 4566678888888774 32 6889999999999854432 333332 3344444554 458899999999999876
Q ss_pred c
Q 010019 430 L 430 (520)
Q Consensus 430 ~ 430 (520)
.
T Consensus 725 ~ 725 (1431)
T KOG1240|consen 725 R 725 (1431)
T ss_pred h
Confidence 3
No 144
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.01 E-value=3.5 Score=40.63 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh----HHH-HHHHHHHHHhcCCCCcchhhhhhchHHHHH
Q 010019 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSI-QSLYDAIRVLLTPDDDQVVASQVYGYARRF 308 (520)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~----~~~-~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i 308 (520)
.-.+.++..+..+++ |++.|..|+++...-.|...|+..+. +-+ -...++++.|...||..+ ..-+
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~ev--------i~fL 135 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEV--------ISFL 135 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHH--------HHHH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHH--------HHHH
Confidence 344667777777776 78899999999998888888876532 444 347889999998776543 2244
Q ss_pred HHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh----------hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019 309 AKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE----------ICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (520)
Q Consensus 309 ~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e----------~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a 378 (520)
.....+|..+..|..++ .-.+.-|...+..+..++. .-..+.. ++..++.-|... +++.+.+..
T Consensus 136 l~tEiiplcLr~me~Gs-elSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~---pS~RLLKhI 209 (262)
T PF04078_consen 136 LQTEIIPLCLRIMEFGS-ELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQ---PSPRLLKHI 209 (262)
T ss_dssp HCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS-----HHHHHHH
T ss_pred HhhchHHHHHHHHHhcc-HHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccC---CChhHHHHH
Confidence 46789999999999875 2233334444444443333 2222221 233344444432 346899999
Q ss_pred HHHHHHhhCCCchHHHHHh
Q 010019 379 CSLLSKLAGSDSNKSAIIE 397 (520)
Q Consensus 379 l~aL~~La~~~~~k~~Iv~ 397 (520)
+++-..|+.++..+.++.+
T Consensus 210 IrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 210 IRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHH
Confidence 9999999999999988875
No 145
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.53 E-value=13 Score=42.40 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=68.9
Q ss_pred HHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCH
Q 010019 381 LLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQ 459 (520)
Q Consensus 381 aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~ 459 (520)
+|+++. .++++...+++.||+..+...++.+ ++..++..+++.|.|++...+..-......-.--.....+....+..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 788887 5689999999999999999999988 78899999999999999754332222221111112222343343455
Q ss_pred HHHHHHHHHHHHHhhhChh
Q 010019 460 QLQRSSCFMIRNLVARNPE 478 (520)
Q Consensus 460 ~vqk~A~~aL~nL~~~~~e 478 (520)
+.-..|+..|+.+...+++
T Consensus 573 ersY~~~siLa~ll~~~~~ 591 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK 591 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc
Confidence 6777899999999876444
No 146
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.53 E-value=13 Score=38.27 Aligned_cols=225 Identities=11% Similarity=0.120 Sum_probs=133.3
Q ss_pred HHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc-c----hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHH
Q 010019 169 ATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-T----ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV 243 (520)
Q Consensus 169 i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~-~----~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L 243 (520)
+.+.|.++.|+..|... +-+....+....++++..+.+ + .+.+.....+.+..++ .+.+++++...+-..|
T Consensus 72 i~~~dll~~Li~~L~~L---~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~-~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKL---DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILL-RGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHTHHHHHHHTGGGS----HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHH-HGGGSTTTHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhC---CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHH-HHhcCccccchHHHHH
Confidence 44568888888888764 444444445555666544321 1 2223333344444444 4456777776666666
Q ss_pred HHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc---CCHHHHHHH
Q 010019 244 AASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI---GIARALVHS 320 (520)
Q Consensus 244 ~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~---g~l~~Lv~l 320 (520)
+.+ .+++.....+.....+..+.+.+..++=++...|..++..|-+.... + +..+... ........+
T Consensus 148 Rec-~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~-~--------~a~fl~~n~d~ff~~~~~L 217 (335)
T PF08569_consen 148 REC-IKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKK-L--------VAEFLSNNYDRFFQKYNKL 217 (335)
T ss_dssp HHH-TTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHH-H--------HHHHHHHTHHHHHHHHHHH
T ss_pred HHH-HhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHH-H--------HHHHHHHHHHHHHHHHHHH
Confidence 665 57888777888888888888888765558888888888876543211 1 0122221 234566677
Q ss_pred HhcCCChhHHHHHHHHHHHhccChhhHHHHH----hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHH
Q 010019 321 LHAGLSSPSLISASIALKAVAVNDEICKSVA----ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAII 396 (520)
Q Consensus 321 L~~~~~~~~~~~a~~aL~~La~~~e~~~~i~----~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv 396 (520)
|.+. +=-++..+...|+.|..+..|...+. +..-+..++.+|++. ++.++-+|.-++.-...+|..-..|.
T Consensus 218 l~s~-NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~----sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 218 LESS-NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK----SKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-----HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred ccCC-CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc----chhhhHHHHHHHHHHHhCCCCChHHH
Confidence 7654 33467889999999987777755433 334467777777763 35899999999988876665444443
Q ss_pred hc--CCHHHHHHHHhccC
Q 010019 397 EN--GGMDKLIVVSARFS 412 (520)
Q Consensus 397 ~~--g~l~~Lv~lL~~~~ 412 (520)
+- .-=+.|+..|..+.
T Consensus 293 ~iL~~Nr~kLl~fl~~f~ 310 (335)
T PF08569_consen 293 DILIKNREKLLRFLKDFH 310 (335)
T ss_dssp HHHHHTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 21 11245666665543
No 147
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.21 E-value=7.8 Score=43.59 Aligned_cols=138 Identities=15% Similarity=0.214 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chh-------
Q 010019 274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDE------- 345 (520)
Q Consensus 274 ~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e------- 345 (520)
+..++-++|.+++.|+--.+. ...+++|+.+|++++ +++.-.+..+..++. +++
T Consensus 300 n~sVVmA~aql~y~lAP~~~~----------------~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~lF~P~lK 361 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKNQV----------------TKIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTLFEPHLK 361 (968)
T ss_pred CcHHHHHHHhHHHhhCCHHHH----------------HHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhhhhhhhh
Confidence 347888889999988853211 234789999999865 233333333333331 111
Q ss_pred ---------h---------HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHH
Q 010019 346 ---------I---------CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIV 406 (520)
Q Consensus 346 ---------~---------~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~ 406 (520)
. -..++..+-|..+++=+..+..+.+..++..+..+|+..|.. .+. ..-.+.-|+.
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~ 436 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQ 436 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHH
Confidence 1 112445555666665555544444446888888888887743 222 2245678999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCCHHHH
Q 010019 407 VSARFSDDASVLQEVMSIITVLSLRSPENA 436 (520)
Q Consensus 407 lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~ 436 (520)
+|+. .++.|..+++..|..|-.++|..-
T Consensus 437 Llss--hde~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 437 LLSS--HDELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred HHhc--ccchhHHHHHHHHHHHHhhChHHH
Confidence 9994 478899999999999988777544
No 148
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.93 E-value=24 Score=35.98 Aligned_cols=178 Identities=13% Similarity=0.185 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHh---cCCHHHHHHHHhcCChHHHHHHHHHHHHhcCC----CCcchhhhhhchHH
Q 010019 233 PEILNSGFAVVAASATGNEVVKESYME---LKIDELILEILSRQRNDSIQSLYDAIRVLLTP----DDDQVVASQVYGYA 305 (520)
Q Consensus 233 ~~v~~~a~~~L~~~~~~~e~nr~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~----dd~~v~~~~a~~~a 305 (520)
.+....++..+..+...+. . ..++. .-.+..+.+.++.+..+-+.-|+.++.-|+.. ++ .
T Consensus 57 ~~~Re~aL~~l~~~l~~~~-~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~-----------~ 123 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRY-L-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED-----------S 123 (309)
T ss_pred HHHHHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc-----------H
Confidence 4444555555555543322 1 12221 12466777777776544444566655555433 22 2
Q ss_pred HHHHHcCCHHHHHHHHhcCCC-hhHHHHHHHHHHHhc---cCh-hhHHHHHhcCChHHHHH--HHhccCC------CCcH
Q 010019 306 RRFAKIGIARALVHSLHAGLS-SPSLISASIALKAVA---VND-EICKSVAENGGIDALLR--CIDDSGL------QGNK 372 (520)
Q Consensus 306 ~~i~~~g~l~~Lv~lL~~~~~-~~~~~~a~~aL~~La---~~~-e~~~~i~~~Ggv~~Ll~--lL~~~~~------~~~~ 372 (520)
..+.+ ...|+|...+..... ..+...++.+|+-++ ..+ +......+ .++.+.. .++.... .+++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 24443 367888888887653 333344444555443 222 21111111 0111111 1111111 1124
Q ss_pred HHHHHHHHHHHHhhC-CCch-HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 373 TVARICCSLLSKLAG-SDSN-KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 373 ~v~~~al~aL~~La~-~~~~-k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
.++..|+.+-+-|.. -+.. .....+ ..+|.|+.+|. +++..|+-.|-.+|+-|.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~--s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLD--SDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 788888888777764 3432 223333 46999999999 789999999888887664
No 149
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.63 E-value=16 Score=41.64 Aligned_cols=154 Identities=11% Similarity=0.061 Sum_probs=88.0
Q ss_pred HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHH
Q 010019 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDA 358 (520)
Q Consensus 280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~ 358 (520)
..=..|..++.++|-.. ..+.++..+. ..|.++++-.-.-|-+.+ .+++-+. .
T Consensus 39 AmK~iIa~M~~G~dmss----------------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~l---------L 92 (757)
T COG5096 39 AMKKIIAQMSLGEDMSS----------------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELAL---------L 92 (757)
T ss_pred HHHHHHHHHhcCCChHH----------------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHH---------H
Confidence 34456666776665322 2455555555 235666665555566665 3332111 1
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 010019 359 LLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438 (520)
Q Consensus 359 Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~ 438 (520)
.++.+.+...++|+.++..|+++|+.|=. .++.. ..++++.+++. ..++.|++.|.-++..|-..+++.
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~-----~el~~-~~~~~ik~~l~--d~~ayVRk~Aalav~kly~ld~~l--- 161 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRV-----KELLG-NIIDPIKKLLT--DPHAYVRKTAALAVAKLYRLDKDL--- 161 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCh-----HHHHH-HHHHHHHHHcc--CCcHHHHHHHHHHHHHHHhcCHhh---
Confidence 12222222334566777777777655421 22322 35677777776 567888888888888877555443
Q ss_pred HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 439 i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
+.+.|.+..+..++.. .+|.|.++|..++..+
T Consensus 162 ~~~~g~~~~l~~l~~D--~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 162 YHELGLIDILKELVAD--SDPIVIANALASLAEI 193 (757)
T ss_pred hhcccHHHHHHHHhhC--CCchHHHHHHHHHHHh
Confidence 3344566666665644 5778888887777776
No 150
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.59 E-value=9.3 Score=39.85 Aligned_cols=233 Identities=13% Similarity=0.075 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH-hcCCcH
Q 010019 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPK 220 (520)
Q Consensus 142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~-~~ggi~ 220 (520)
.......++-+|..-|. ++.+|..+..+|.+..+++.+.... ++......++..+..+..+... ..+. +....+
T Consensus 35 ~~s~Rr~sll~La~K~~---~~~Fr~~~ra~g~~~~l~~~l~~~~-~d~~~~l~~a~i~~~l~~d~~~-~~l~~~~~~~~ 109 (361)
T PF07814_consen 35 SSSVRRSSLLELASKCA---DPQFRRQFRAHGLVKRLFKALSDAP-DDDILALATAAILYVLSRDGLN-MHLLLDRDSLR 109 (361)
T ss_pred CccHHHHHHHHHHHHhC---CHHHHHHHHHcCcHHHHHHHhcccc-chHHHHHHHHHHHHHHccCCcc-hhhhhchhHHH
Confidence 34556778888888888 8999999999999999999885432 1222222223333334444322 2332 334455
Q ss_pred HHHHHHh--cC---CC-------------------------------------ChHHHHHHHHHHHHHh-----------
Q 010019 221 LLVNILI--DG---NE-------------------------------------DPEILNSGFAVVAASA----------- 247 (520)
Q Consensus 221 ~Lv~lL~--~~---~~-------------------------------------~~~v~~~a~~~L~~~~----------- 247 (520)
.++++|. .. .. ...-+..|+.++..+|
T Consensus 110 ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~ 189 (361)
T PF07814_consen 110 LLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSE 189 (361)
T ss_pred HHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhcccchh
Confidence 5566555 10 00 0011123344444442
Q ss_pred ---cCChhhHHHHHhcCCHHHHHHHHhc----CC------h------HHHHHHHHHHHHhcCCCC-cchhhhhhchHHHH
Q 010019 248 ---TGNEVVKESYMELKIDELILEILSR----QR------N------DSIQSLYDAIRVLLTPDD-DQVVASQVYGYARR 307 (520)
Q Consensus 248 ---~~~e~nr~~i~~~g~i~~Lv~lL~~----~~------~------~~~~~a~~aL~~Ls~~dd-~~v~~~~a~~~a~~ 307 (520)
...+.-|+.+.+.|++..+++++.. .. . ..+..+.++|-+-+...+ +.. | .
T Consensus 190 t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~-------~--l 260 (361)
T PF07814_consen 190 TSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQS-------Y--L 260 (361)
T ss_pred hhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchH-------H--H
Confidence 0123346778888899999999862 10 1 122224455555443221 111 1 2
Q ss_pred HH-HcCCHHHHHH-HHhcCCC--hhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHH---HHhc-------cCCCCcH
Q 010019 308 FA-KIGIARALVH-SLHAGLS--SPSLISASIALKAVAV-NDEICKSVAENGGIDALLR---CIDD-------SGLQGNK 372 (520)
Q Consensus 308 i~-~~g~l~~Lv~-lL~~~~~--~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~---lL~~-------~~~~~~~ 372 (520)
+. ..+.++.+.. +++...+ ...+..++..|-||+. +++.|..+...+.+..+.. .+.. .++...-
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 340 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSF 340 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccc
Confidence 22 2233333333 3332211 2335677888889984 5566777665543332221 1111 0111123
Q ss_pred HHHHHHHHHHHHhhCC
Q 010019 373 TVARICCSLLSKLAGS 388 (520)
Q Consensus 373 ~v~~~al~aL~~La~~ 388 (520)
++..-++++|-||+..
T Consensus 341 D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 341 DILILALGLLINLVEH 356 (361)
T ss_pred hHHHHHHHhHHHheee
Confidence 5667788888888843
No 151
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.86 E-value=29 Score=39.07 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=70.3
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (520)
++++.++.=+. ..++.++.-|+.+++.+.-+. +..-...++.+.++ .+++.+...+.-.+.. -+..
T Consensus 86 ~avnt~~kD~~---d~np~iR~lAlrtm~~l~v~~------i~ey~~~Pl~~~l~--d~~~yvRktaa~~vak---l~~~ 151 (734)
T KOG1061|consen 86 LAVNTFLKDCE---DPNPLIRALALRTMGCLRVDK------ITEYLCDPLLKCLK--DDDPYVRKTAAVCVAK---LFDI 151 (734)
T ss_pred hhhhhhhccCC---CCCHHHHHHHhhceeeEeehH------HHHHHHHHHHHhcc--CCChhHHHHHHHHHHH---hhcC
Confidence 34444443333 347777887888877764322 11223456677775 3456666655555544 3456
Q ss_pred hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC
Q 010019 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD 292 (520)
Q Consensus 253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d 292 (520)
+.+.+...|.++.|..++...+..++.+|.++|..+...+
T Consensus 152 ~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 152 DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 7788889999999999999656689999999999887654
No 152
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.53 E-value=1.1 Score=38.72 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=57.1
Q ss_pred CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 400 ~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
.+..|+++|.. +.++.+..-||-=|..++...|.-+..+-+.|+-+.++++|. | .+++|+++|..++.-+...
T Consensus 44 llk~L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-h-~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-H-EDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHh
Confidence 36688999953 347888888999999999888887777777888888888885 5 6899999999998877543
No 153
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.40 E-value=4 Score=46.34 Aligned_cols=224 Identities=13% Similarity=0.137 Sum_probs=134.3
Q ss_pred cCChhhHHHHHhcCCHHHHHHHHhcCC------hHHHHHHHHHHHHhcCCCCcchhhhh-hchHHHHHHHcCCHHHHHHH
Q 010019 248 TGNEVVKESYMELKIDELILEILSRQR------NDSIQSLYDAIRVLLTPDDDQVVASQ-VYGYARRFAKIGIARALVHS 320 (520)
Q Consensus 248 ~~~e~nr~~i~~~g~i~~Lv~lL~~~~------~~~~~~a~~aL~~Ls~~dd~~v~~~~-a~~~a~~i~~~g~l~~Lv~l 320 (520)
.+-|..|..-+..|+.+..+.-++... +......||-+-.+-.- -+.|-+ .++-+.-+.+.+++..++++
T Consensus 533 Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~---gp~f~~~~w~~aenflkls~v~~~L~l 609 (1516)
T KOG1832|consen 533 IKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRL---GPTFVKAQWPAAENFLKLSGVVTMLEL 609 (1516)
T ss_pred HHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHh---ChhhhhhcchHHHHHHHhHHHHHHHHH
Confidence 444555666566666666665444331 14555556555443321 122222 23456677788999999998
Q ss_pred HhcCCC-------hhHHHHHHHHHHHhccChhhHHHHHhc--------CChHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010019 321 LHAGLS-------SPSLISASIALKAVAVNDEICKSVAEN--------GGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (520)
Q Consensus 321 L~~~~~-------~~~~~~a~~aL~~La~~~e~~~~i~~~--------Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L 385 (520)
....++ .+.+..|+.+|.-+..-++...+++.+ .|+..++..-.......+++++..|+.+|-|+
T Consensus 610 ~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIinc 689 (1516)
T KOG1832|consen 610 CQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINC 689 (1516)
T ss_pred HhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhhee
Confidence 875432 256677777777777777776666532 25666655433222223679999999999999
Q ss_pred h-CCCchHHHHH-hcC---CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC--CCC
Q 010019 386 A-GSDSNKSAII-ENG---GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF--PNA 458 (520)
Q Consensus 386 a-~~~~~k~~Iv-~~g---~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~--~~~ 458 (520)
. ..|+++..++ ..| |-+.. .+.+.+ .....++.+.-.|+-. ....||..|+.+|+-. +.+
T Consensus 690 Vc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~-ks~~le~~l~~mw~~V----------r~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 690 VCPPPTTRPSTIVAVGSQSGDRRI--FLGAGT-KSAKLEQVLRQMWEAV----------RGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred ecCCCCcchhhhhhccccCCCccc--cccCCC-chHHHHHHHHHHHHHH----------hcCccHHHHHHHHhccCCCCc
Confidence 6 5667776643 222 11111 222222 2234455555555433 3467999999998531 223
Q ss_pred -HHHHHHHHHHHHHHhhhChhhHHHHHhCCH
Q 010019 459 -QQLQRSSCFMIRNLVARNPENRKLLLSNGV 488 (520)
Q Consensus 459 -~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~ 488 (520)
..+.+-||.+|.-| +|+++.++.+...-.
T Consensus 757 aD~IRalAc~~L~GL-aR~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGL-ARDDTVRQILTKLPL 786 (1516)
T ss_pred HHHHHHHHHHHHhcc-ccCcHHHHHHHhCcc
Confidence 34677799999999 789999888876533
No 154
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.27 E-value=52 Score=37.43 Aligned_cols=252 Identities=12% Similarity=0.115 Sum_probs=123.3
Q ss_pred CcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHH
Q 010019 188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL 265 (520)
Q Consensus 188 ~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~ 265 (520)
+++-+.++||.+|+++-- +.+ .|.++-.++.- ...+-+...|+.+|-.+=+-..+.+..+ ++.
T Consensus 120 pN~LiRasALRvlSsIRv-----p~I-----aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~ 184 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRV-----PMI-----APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEV 184 (968)
T ss_pred CcHHHHHHHHHHHHhcch-----hhH-----HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHH
Confidence 466778899999988631 111 23333333322 2235566667777766544445555544 334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc---
Q 010019 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--- 342 (520)
Q Consensus 266 Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--- 342 (520)
+-.+|..++.-++-.|..+.-..|-+. . ..|.+ -...|..+|..- +.=.+.-+..+|.+-|.
T Consensus 185 I~~LLaD~splVvgsAv~AF~evCPer---l---------dLIHk--nyrklC~ll~dv-deWgQvvlI~mL~RYAR~~l 249 (968)
T KOG1060|consen 185 IKKLLADRSPLVVGSAVMAFEEVCPER---L---------DLIHK--NYRKLCRLLPDV-DEWGQVVLINMLTRYARHQL 249 (968)
T ss_pred HHHHhcCCCCcchhHHHHHHHHhchhH---H---------HHhhH--HHHHHHhhccch-hhhhHHHHHHHHHHHHHhcC
Confidence 555566655566677777777666432 1 12221 233333333221 11011112222222221
Q ss_pred -ChhhH---------------------HHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCC
Q 010019 343 -NDEIC---------------------KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG 400 (520)
Q Consensus 343 -~~e~~---------------------~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~ 400 (520)
.+... .-++-.--++.|++..+-..-..|+.|+-+++.+.+.||-..++. ..
T Consensus 250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~------~i 323 (968)
T KOG1060|consen 250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT------KI 323 (968)
T ss_pred CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH------HH
Confidence 11000 001111113344433222111234689999999999998543221 23
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCH-----------------HHHH--------HHHhcCcHHHHHHHHHhC
Q 010019 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-----------------ENAA--------RAMEAGSGDLAIQAMLKF 455 (520)
Q Consensus 401 l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~-----------------~~~~--------~i~~~G~i~~lv~~L~~~ 455 (520)
+++|+++|+.+ +.+|.-.+..++.++...| ...+ .+..++-+..+++=++.+
T Consensus 324 ~kaLvrLLrs~---~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~Y 400 (968)
T KOG1060|consen 324 AKALVRLLRSN---REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTY 400 (968)
T ss_pred HHHHHHHHhcC---CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 67899999854 4556666666666664433 2222 233444455555544442
Q ss_pred --CCCHHHHHHHHHHHHHHhhhChh
Q 010019 456 --PNAQQLQRSSCFMIRNLVARNPE 478 (520)
Q Consensus 456 --~~~~~vqk~A~~aL~nL~~~~~e 478 (520)
+.+..+...|.-||..++.+..+
T Consensus 401 I~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 401 IKSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred HhcCchhHHHHHHHHHHHHHHhhCc
Confidence 23334556666677766655443
No 155
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.40 E-value=3.6 Score=32.42 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019 375 ARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (520)
Q Consensus 375 ~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G 443 (520)
++.+++++++++.++..-..+-+.+.++.++++.+. ++...++--|..+|.-++ ++.+-+..+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~-s~v~siRGT~fy~Lglis-~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN-SPVLSIRGTCFYVLGLIS-STEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh-CCccchHHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 578999999999988888888788999999998874 557888888888888777 4766666665555
No 156
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=87.10 E-value=3.8 Score=38.69 Aligned_cols=132 Identities=8% Similarity=-0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhc-h----HHHHHH-HcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhccCh
Q 010019 276 DSIQSLYDAIRVLLTPDDDQVVASQVY-G----YARRFA-KIGIARALVHSLHAGLS-----SPSLISASIALKAVAVND 344 (520)
Q Consensus 276 ~~~~~a~~aL~~Ls~~dd~~v~~~~a~-~----~a~~i~-~~g~l~~Lv~lL~~~~~-----~~~~~~a~~aL~~La~~~ 344 (520)
.....+|.+|+||+..+.....+-+.. + ..+... +...+..|++++..+.+ ..-....+..|.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 334457888888887665422110000 0 000111 22467888888877321 234566788899999999
Q ss_pred hhHHHHHhcC-ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHH
Q 010019 345 EICKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS 408 (520)
Q Consensus 345 e~~~~i~~~G-gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL 408 (520)
+-++.+.+.. +..++-+++.- .++.+..-..-++++|+|++...+.-..+.....+..|-.+|
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~f-t~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LL 153 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPF-TEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLL 153 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHH-hccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHH
Confidence 9998888654 22234444332 222234555678999999998877777776644344333333
No 157
>PRK09169 hypothetical protein; Validated
Probab=86.46 E-value=1.1e+02 Score=39.20 Aligned_cols=262 Identities=15% Similarity=0.142 Sum_probs=129.0
Q ss_pred CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcc
Q 010019 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQ 295 (520)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~ 295 (520)
..+..++..|++..++......+...-..++ .....+.. ++.-.+..++..|....+ ..-+.+...|..-...+..-
T Consensus 163 ~~v~~lLNalSKWP~~~~c~~aa~~lA~~la-~~~~l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l 240 (2316)
T PRK09169 163 ISFALLLNALSKWPDNTDCQTAAEQLADRLA-SDSRLLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGL 240 (2316)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhc-cCHHHHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHH
Confidence 3566677777776666555544443333333 33333433 333456667777766543 44445555555444333210
Q ss_pred hhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh-ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHH
Q 010019 296 VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV-AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTV 374 (520)
Q Consensus 296 v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L-a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v 374 (520)
. .-...-.+..+++.|.+.++.+....++.+|... +..+.-+.. .+.-+|...+..|++.++. +.
T Consensus 241 ~----------~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~-~~~Q~vAN~LNALSKwp~~---~~ 306 (2316)
T PRK09169 241 L----------QSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLA-LDPQGVANALNALSKWPDT---EA 306 (2316)
T ss_pred H----------HhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhh-cCHHHHHHHHHHHHhCCCc---hH
Confidence 0 0111234666777777767655566666666543 333333333 4445566677777776554 33
Q ss_pred HHHHHHHH-HHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHH
Q 010019 375 ARICCSLL-SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML 453 (520)
Q Consensus 375 ~~~al~aL-~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~ 453 (520)
.+.++..| ..|+..+..... .+..+|.-.+..|.++.+.+. +..+..+|+.=..+++..++.+ ..-.+--.+.+|.
T Consensus 307 cr~aa~~LA~rL~~~~~l~~~-~~aQ~vAN~LNALSKWp~~~~-c~~Aa~~LA~rL~~~~~l~~~~-npQelANaLnALS 383 (2316)
T PRK09169 307 CRQAAEALAERLAQERGLLQA-MNAQAVANALNALSKWPDEEA-CRAAAEALAARLARDAGLRRAL-NAQELANALNALS 383 (2316)
T ss_pred HHHHHHHHHHHHHhChhhhhh-CCHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHhChhhhhhC-CHHHHHHHHHHHH
Confidence 33333333 233333333332 233456666666766654333 3444444443222344433322 1112344455666
Q ss_pred hCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC
Q 010019 454 KFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH 499 (520)
Q Consensus 454 ~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h 499 (520)
+.+.... .+.|+.+|.-=..+.+..+..|-..|+...|. ++.+-
T Consensus 384 Kwp~~~~-cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLn-ALsKW 427 (2316)
T PRK09169 384 KWPDEEA-CRAAAEALAARLARDAGLRAALNAQGVANALN-ALSKW 427 (2316)
T ss_pred cCCCchH-HHHHHHHHHHHHHhchhhhhhcChHHHHHHHH-HHhcC
Confidence 6654433 44555444433344555566666666666664 33344
No 158
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.44 E-value=72 Score=37.15 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=69.0
Q ss_pred CCcHHHHHHHhcCC------CChHHHHHHHHHHHHHhc---CChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 010019 217 GGPKLLVNILIDGN------EDPEILNSGFAVVAASAT---GNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRV 287 (520)
Q Consensus 217 ggi~~Lv~lL~~~~------~~~~v~~~a~~~L~~~~~---~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 287 (520)
|.++.++++|.++. .++....-|++.++++|. +....+ ..++.=.+..+...+++...-++..|||++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 45666777776432 244555667777777763 222111 12232234445555555443555669999999
Q ss_pred hcCCCC-cchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhH
Q 010019 288 LLTPDD-DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC 347 (520)
Q Consensus 288 Ls~~dd-~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~ 347 (520)
.+.-|= ... .+ ..+++...+.|...++-.+..+|+.||..+..+.+..
T Consensus 489 ~~~~df~d~~----------~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 489 FSSIDFKDPN----------NL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHhccCCChH----------HH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 984331 111 12 1356777777875445578999999999888665533
No 159
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.44 E-value=55 Score=35.81 Aligned_cols=195 Identities=13% Similarity=0.154 Sum_probs=103.0
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH---HHHH
Q 010019 261 KIDELILEILSRQRNDSIQSLYDAIRVLLT-PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS---ASIA 336 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~---a~~a 336 (520)
..++.++.-+.+.....+.-|..-|..... .... . ...-.|++..++.++.......+... .-..
T Consensus 250 ~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~----------l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 250 DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-L----------LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred cchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-h----------hhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 367788887777555555555433433322 1111 0 12234566666666654322122211 1122
Q ss_pred HHHhccChhhHHHHHhcC-ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCH
Q 010019 337 LKAVAVNDEICKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA 415 (520)
Q Consensus 337 L~~La~~~e~~~~i~~~G-gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~ 415 (520)
|..+...+.-.+. ++-| .++.+...+... ..+..-.++.-+..|-..-.++-........+.|+..|. ..+.
T Consensus 319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~----~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs--d~sd 391 (675)
T KOG0212|consen 319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDD----REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS--DRSD 391 (675)
T ss_pred HHHHHhhhhhccc-cchHHHHHHHHHHhhcc----hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc--Cchh
Confidence 3334333333322 3332 233444444432 224555666666666544444444444455677777776 4567
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHH-HHHHHHHHHHHHhhh-ChhhH
Q 010019 416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCFMIRNLVAR-NPENR 480 (520)
Q Consensus 416 ~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~-vqk~A~~aL~nL~~~-~~e~~ 480 (520)
.|...++..|+++|... +.. |..+.+..+|..+..+.. +...|...||.|+.. ++|..
T Consensus 392 ~vvl~~L~lla~i~~s~-~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~I 451 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSS-NSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERI 451 (675)
T ss_pred HHHHHHHHHHHHHhcCc-ccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHH
Confidence 89999999999999633 222 445666666655555554 444488888888754 56553
No 160
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.23 E-value=5.4 Score=33.26 Aligned_cols=87 Identities=10% Similarity=0.002 Sum_probs=50.8
Q ss_pred HHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh--cCcHHHHHHHHH
Q 010019 377 ICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME--AGSGDLAIQAML 453 (520)
Q Consensus 377 ~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~--~G~i~~lv~~L~ 453 (520)
.++.+|+..+. -+..-....+ -.+++++..+. ..+..|+..||.+|.|++.. .+..++. ....+.+.+++.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD--DQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 45555666552 2222222222 35788888887 67899999999999999852 2223322 234555566554
Q ss_pred hCCCCHHHHHHHHHHHHHH
Q 010019 454 KFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 454 ~~~~~~~vqk~A~~aL~nL 472 (520)
. .++.|+ +++..|-++
T Consensus 79 D--~d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 79 D--PDENVR-SAAELLDRL 94 (97)
T ss_pred C--CchhHH-HHHHHHHHH
Confidence 3 456665 444555444
No 161
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.74 E-value=18 Score=40.11 Aligned_cols=140 Identities=11% Similarity=0.124 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCC---ChhHHHHHHHHHHHhc----cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019 314 ARALVHSLHAGL---SSPSLISASIALKAVA----VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (520)
Q Consensus 314 l~~Lv~lL~~~~---~~~~~~~a~~aL~~La----~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La 386 (520)
+..+.++++... .+.+...++.+++.|. .+.+.|...+-...++.+.+.|.......+.+-....+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 566666666422 2334455556666554 333333211112345666666654322122244566777777765
Q ss_pred CCCchHHHHHhcCCHHHHHHHHh-ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHH
Q 010019 387 GSDSNKSAIIENGGMDKLIVVSA-RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465 (520)
Q Consensus 387 ~~~~~k~~Iv~~g~l~~Lv~lL~-~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A 465 (520)
... .++.+...+. ....++.++..|+++|..++...|+..+ +.++.++.+...++++...|
T Consensus 475 ~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 475 HPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred Chh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHHH
Confidence 321 2233333333 2334678999999999999866665443 45666777777788887777
Q ss_pred HHHHHH
Q 010019 466 CFMIRN 471 (520)
Q Consensus 466 ~~aL~n 471 (520)
+.+|-.
T Consensus 537 ~~~lm~ 542 (574)
T smart00638 537 VLVLME 542 (574)
T ss_pred HHHHHh
Confidence 666644
No 162
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=85.21 E-value=82 Score=36.69 Aligned_cols=309 Identities=13% Similarity=0.058 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc--C-
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG--G- 217 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~--g- 217 (520)
+|...-..|+.-|.-+.. ..+......+.-.++.++.+++|... +..|+..+-.+ .++++.. .
T Consensus 705 sdlhvt~~a~~~L~tl~~---~~ps~l~~~~~~iL~~ii~ll~Spll-----qg~al~~~l~~------f~alV~t~~~~ 770 (1233)
T KOG1824|consen 705 SDLHVTQLAVAFLTTLAI---IQPSSLLKISNPILDEIIRLLRSPLL-----QGGALSALLLF------FQALVITKEPD 770 (1233)
T ss_pred HHHHHHHHHHHHHHHHHh---cccHHHHHHhhhhHHHHHHHhhCccc-----cchHHHHHHHH------HHHHHhcCCCC
Confidence 555555555555555554 45555556667788889999987532 22222222111 1122211 1
Q ss_pred -CcHHHHHHHhcCCCChH---HH-------HHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHH
Q 010019 218 -GPKLLVNILIDGNEDPE---IL-------NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAI 285 (520)
Q Consensus 218 -gi~~Lv~lL~~~~~~~~---v~-------~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL 285 (520)
....++.++...-.+.. +- ..++.+|...|. +.++.. +...+.+++..+.+ ....-|.-.|
T Consensus 771 l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~--~~s~s~-----a~kl~~~~~s~~s~~~ikvfa~Lsl 843 (1233)
T KOG1824|consen 771 LDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP--QKSKSL-----ATKLIQDLQSPKSSDSIKVFALLSL 843 (1233)
T ss_pred ccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc--ccchhH-----HHHHHHHHhCCCCchhHHHHHHhhh
Confidence 14556666654322211 11 122233333332 222221 12334444444433 3333455555
Q ss_pred HHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhc
Q 010019 286 RVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (520)
Q Consensus 286 ~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~ 365 (520)
..+-...+... ..+.-..+++.+.+ +..+++..|..||+++++.+-. .-+|.+++....
T Consensus 844 GElgr~~~~s~-------------~~e~~~~iieaf~s-p~edvksAAs~ALGsl~vgnl~-------~yLpfil~qi~s 902 (1233)
T KOG1824|consen 844 GELGRRKDLSP-------------QNELKDTIIEAFNS-PSEDVKSAASYALGSLAVGNLP-------KYLPFILEQIES 902 (1233)
T ss_pred hhhccCCCCCc-------------chhhHHHHHHHcCC-ChHHHHHHHHHHhhhhhcCchH-------hHHHHHHHHHhc
Confidence 55554433221 12223345555554 4578999999999999964321 124666776665
Q ss_pred cCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019 366 SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD--ASVLQEVMSIITVLSLRSPENAARAMEAG 443 (520)
Q Consensus 366 ~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~--~~v~~~a~~aL~nLa~~~~~~~~~i~~~G 443 (520)
.+.. ..+.-.++.-.-.=++.+ .-...++.+..+|..|.++ ...+.-...+|.-|+.-+|+.
T Consensus 903 qpk~--QyLLLhSlkevi~~~svd------~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes-------- 966 (1233)
T KOG1824|consen 903 QPKR--QYLLLHSLKEVIVSASVD------GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES-------- 966 (1233)
T ss_pred chHh--HHHHHHHHHHHHHHhccc------hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------
Confidence 4332 244444443221111222 1124577888888777542 334444556677777767753
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHH
Q 010019 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDA 509 (520)
Q Consensus 444 ~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aA 509 (520)
..+.+-..|.. +.+...--+..+++-..+..|.-.+.++...+.+.+.....-.....++|-.+
T Consensus 967 LlpkL~~~~~S--~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv 1030 (1233)
T KOG1824|consen 967 LLPKLKLLLRS--EASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVV 1030 (1233)
T ss_pred HHHHHHHHhcC--CCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 34555555543 34444455666666666666666677777666666644433333445554333
No 163
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=85.20 E-value=14 Score=34.20 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcc------cCcHHHHHHHHHHHHHhhcccccchhHHh-cCCcH
Q 010019 148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR------CGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPK 220 (520)
Q Consensus 148 ~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~------~~~~~~~~~al~~La~l~~~~~~~~~i~~-~ggi~ 220 (520)
+.+..|+..+.. +...+...+++.||+..|+.+|.... ..+...+..++..+-++.+...+...++. .+++.
T Consensus 83 ~~L~~L~v~Lrt-~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRT-NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHH-S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhcc-CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHH
Confidence 556666665553 35667788889999999999986432 12335556666666666655555566665 46788
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHh
Q 010019 221 LLVNILIDGNEDPEILNSGFAVVAASA 247 (520)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~ 247 (520)
.++..|. +.+..+...++..|+.+|
T Consensus 162 ~i~~~L~--s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLD--SPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT----TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHHH
Confidence 8888886 456788888888888776
No 164
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.05 E-value=1.9 Score=27.68 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 401 MDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 401 l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
+|.++++++ .+++.|+..|+.+|..|+.
T Consensus 2 lp~l~~~l~--D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLN--DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT---SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHHHh
Confidence 688999998 7799999999999999874
No 165
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.72 E-value=77 Score=35.95 Aligned_cols=104 Identities=20% Similarity=0.198 Sum_probs=59.3
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch
Q 010019 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN 391 (520)
Q Consensus 312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~ 391 (520)
..|..+..+|.+. ++.+.-+++++|-.|+.++...+..+ ..+++++.+-++. .+.--.+--|..|. . +
T Consensus 243 ~~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~p~alk~Aa-----~~~i~l~~kesdn---nvklIvldrl~~l~--~-~ 310 (948)
T KOG1058|consen 243 RYIRCIYNLLSST-SSAVIFEAAGTLVTLSNDPTALKAAA-----STYIDLLVKESDN---NVKLIVLDRLSELK--A-L 310 (948)
T ss_pred HHHHHHHHHHhcC-CchhhhhhcceEEEccCCHHHHHHHH-----HHHHHHHHhccCc---chhhhhHHHHHHHh--h-h
Confidence 4577888888765 56677788888888877666544433 4566666554443 22222333333333 1 1
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 392 k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
-..|.+ |-+--++.+|. +.+-+|++.++....-|+.
T Consensus 311 ~~~il~-~l~mDvLrvLs--s~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 311 HEKILQ-GLIMDVLRVLS--SPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred hHHHHH-HHHHHHHHHcC--cccccHHHHHHHHHHhhhh
Confidence 122322 34445556665 5567777777777666653
No 166
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.50 E-value=96 Score=36.88 Aligned_cols=240 Identities=13% Similarity=0.170 Sum_probs=127.7
Q ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHHhc---CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHH
Q 010019 230 NEDPEILNSGFAVVAASATGNEVVKESYMEL---KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (520)
Q Consensus 230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~ 306 (520)
+.+..+|..+.+.|..++.. +.. +.+... -+-..|.+.+++.....+...+.+|..|-..-+ .+|..
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~--------~e~~~ 734 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS--------AEHCD 734 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--------HHHHH
Confidence 34678888999999888765 222 122211 122344444444444666666666665543211 12222
Q ss_pred HHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcC------ChHHHHHHHhccCCCCcHHHHHHH--
Q 010019 307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG------GIDALLRCIDDSGLQGNKTVARIC-- 378 (520)
Q Consensus 307 ~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~G------gv~~Ll~lL~~~~~~~~~~v~~~a-- 378 (520)
.+.+ .|+-++=.++.. +....+.+..+|..++. .+...+.| .|...+..+..+. .++ .....+
T Consensus 735 ~i~k--~I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl-~gd-~~~~~as~ 805 (1176)
T KOG1248|consen 735 LIPK--LIPEVILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGL-VGD-STRVVASD 805 (1176)
T ss_pred HHHH--HHHHHHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhh-ccc-HHHHHHHH
Confidence 3333 244444444443 44556777777777763 23334444 4455555555431 111 122222
Q ss_pred HHHHHHhhCCCchHHHHHhcC----CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh
Q 010019 379 CSLLSKLAGSDSNKSAIIENG----GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK 454 (520)
Q Consensus 379 l~aL~~La~~~~~k~~Iv~~g----~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~ 454 (520)
+-++..+... -..+.+.+ .+..+...|. ++++.+.+.|++.+..++..-|+-+-.-...-.++.+..+...
T Consensus 806 Ivai~~il~e---~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 806 IVAITHILQE---FKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred HHHHHHHHHH---HhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh
Confidence 3333333311 11122223 3444444555 7789999999999999998888766554444467777776654
Q ss_pred CCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHH
Q 010019 455 FPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQA 495 (520)
Q Consensus 455 ~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~ 495 (520)
| ...+.++.-.++--|+.+ ..+..+.+..+.-..+|..+
T Consensus 881 ~--k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 881 H--KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred h--hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 4 456667777777777653 45555666654334444333
No 167
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.40 E-value=58 Score=34.28 Aligned_cols=240 Identities=17% Similarity=0.120 Sum_probs=119.2
Q ss_pred cHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHH-hcCCH
Q 010019 189 SKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYM-ELKID 263 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~nr~~i~-~~g~i 263 (520)
+..+...+++.|+++.-.. ..+..+.+......+++.+...- --.++...-++.|.-+..-+...|..++ +.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 4456666777777765332 23444445444444444432111 1123333444555444444455666655 77999
Q ss_pred HHHHHHHhcC----C-----h------HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHH-------
Q 010019 264 ELILEILSRQ----R-----N------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL------- 321 (520)
Q Consensus 264 ~~Lv~lL~~~----~-----~------~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL------- 321 (520)
+.+...|... + . ...-.+..+++|++.+.+-.+....+.. ++.+. +.+..++..+
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~-~r~l~--~llr~cl~~vT~~~~~~ 266 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQ-ARHLT--ILLRHCLLIVTLRDSTE 266 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHH-HHHHH--HHHHHHHhhccccchHH
Confidence 9999999753 1 1 1112255677888876554332111110 11111 1122222111
Q ss_pred --hcCCC---hhHHHHHHHHHHHhccChhhHHH-HHhcCC--hHHHHHHHhccC-----CCCcHHHHHHHHHHHHHhhCC
Q 010019 322 --HAGLS---SPSLISASIALKAVAVNDEICKS-VAENGG--IDALLRCIDDSG-----LQGNKTVARICCSLLSKLAGS 388 (520)
Q Consensus 322 --~~~~~---~~~~~~a~~aL~~La~~~e~~~~-i~~~Gg--v~~Ll~lL~~~~-----~~~~~~v~~~al~aL~~La~~ 388 (520)
.++.- +.+....+.++...-. .|+|.+ +..-.| .+++..+|.... ++...+++.+.+.+|..+|..
T Consensus 267 elhshav~~L~nv~~k~~~~~~~~~p-~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~ 345 (532)
T KOG4464|consen 267 ELHSHAVNLLDNVPEKCLDVLAGAKP-HECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARS 345 (532)
T ss_pred HHhhccCCccCCchhhhhhcccCCCC-cchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhh
Confidence 11110 1222333433332221 233322 222222 345555554321 111247888999999999988
Q ss_pred CchHHHHHhcCCHHHHHHHHhccCC---------------CHHHHHHHHHHHHHHhcCC
Q 010019 389 DSNKSAIIENGGMDKLIVVSARFSD---------------DASVLQEVMSIITVLSLRS 432 (520)
Q Consensus 389 ~~~k~~Iv~~g~l~~Lv~lL~~~~~---------------~~~v~~~a~~aL~nLa~~~ 432 (520)
+.+.........+|+|.++=++..- +..++.-+.-.|..||.++
T Consensus 346 ~R~~Rkylr~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKes 404 (532)
T KOG4464|consen 346 HRVMRKYLRQQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKES 404 (532)
T ss_pred hHHHHHHHHHhcCCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcc
Confidence 8877777777899988876554322 2345555566666666543
No 168
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=83.36 E-value=70 Score=34.41 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhcCC---hhhHHHHHhcCCHHHHHHHHhcCC---h---HHHHH-HHHHHHHhcCCCCcchhhhhhch
Q 010019 234 EILNSGFAVVAASATGN---EVVKESYMELKIDELILEILSRQR---N---DSIQS-LYDAIRVLLTPDDDQVVASQVYG 303 (520)
Q Consensus 234 ~v~~~a~~~L~~~~~~~---e~nr~~i~~~g~i~~Lv~lL~~~~---~---~~~~~-a~~aL~~Ls~~dd~~v~~~~a~~ 303 (520)
+.+..|+-.+...+... ..+|..+.++=|.+-+=++|++.+ + .+.+. +..+|...|.+.+--. |
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAs-----h- 99 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELAS-----H- 99 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhcc-----C-
Confidence 34446666666666432 336778888888888889998752 1 44444 6777888887664311 1
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCChh------HHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhc
Q 010019 304 YARRFAKIGIARALVHSLHAGLSSP------SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (520)
Q Consensus 304 ~a~~i~~~g~l~~Lv~lL~~~~~~~------~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~ 365 (520)
++++ +.||.|.+.+..+.|++ ++.++...|..++..+.--+.++..||++.+-++-..
T Consensus 100 --~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 100 --EEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred --HHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 2444 35999999999876554 7889999999999877667788899999998876543
No 169
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.90 E-value=21 Score=39.53 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=113.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH---HhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010019 263 DELILEILSRQRNDSIQSLYDAIR---VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA 339 (520)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~a~~aL~---~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~ 339 (520)
....+++|+....++..+|..+++ |++-....+. .+. +.+. ..++..+...++... -.+...|+.+|+.
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e-----~~e-~kl~-D~aF~~vC~~v~D~s-l~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE-----SEE-EKLK-DAAFSSVCRAVRDRS-LSVRVEAAKALGE 307 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch-----hhh-hhhH-HHHHHHHHHHHhcCc-eeeeehHHHHhch
Confidence 456677777655566666655444 4442111110 011 1222 235667777777643 3456778888888
Q ss_pred hc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHh---------h-----CCCchHHHHHhcCCHHHH
Q 010019 340 VA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL---------A-----GSDSNKSAIIENGGMDKL 404 (520)
Q Consensus 340 La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L---------a-----~~~~~k~~Iv~~g~l~~L 404 (520)
+- +.+++..+..+..+.. =++... .-.+..-....+. + ..++.-..|+..|+.-.+
T Consensus 308 ~~~vSee~i~QTLdKKlms----~lRRkr-----~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~ 378 (823)
T KOG2259|consen 308 FEQVSEEIIQQTLDKKLMS----RLRRKR-----TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGAL 378 (823)
T ss_pred HHHhHHHHHHHHHHHHHhh----hhhhhh-----hcccchHHHHhcCCcccCccccccCchhhcccccccccccccccee
Confidence 76 5677766666543222 121100 0111111222222 0 123344558888999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh---ChhhHH
Q 010019 405 IVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR---NPENRK 481 (520)
Q Consensus 405 v~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~---~~e~~~ 481 (520)
|.-|. .+--+|+++|+..++.|+...|.-+... ++.|+..+.. ....|.-+|..+|..++.+ +.++..
T Consensus 379 VhGlE--DEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfND--E~~~VRL~ai~aL~~Is~~l~i~eeql~ 449 (823)
T KOG2259|consen 379 VHGLE--DEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFND--EIEVVRLKAIFALTMISVHLAIREEQLR 449 (823)
T ss_pred eeech--HHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhcc--HHHHHHHHHHHHHHHHHHHheecHHHHH
Confidence 99887 4456899999999999999888766543 4677776633 3456777788888888643 455555
Q ss_pred HHH
Q 010019 482 LLL 484 (520)
Q Consensus 482 ~l~ 484 (520)
.|+
T Consensus 450 ~il 452 (823)
T KOG2259|consen 450 QIL 452 (823)
T ss_pred HHH
Confidence 554
No 170
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.43 E-value=17 Score=41.96 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=54.1
Q ss_pred CCHHHHHHHHhcCCh---HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHH
Q 010019 261 KIDELILEILSRQRN---DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIAL 337 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~---~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL 337 (520)
++.+.|++-+..... +....++.++.+-+.. ...++.+...++.. ++.....+...+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------------------~~~~~~I~e~lk~k-np~~k~~~~~~l 395 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------------------SKMSEAILEALKGK-NPQIKGECLLLL 395 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------------------HHHHHHHHHHhcCC-ChhhHHHHHHHH
Confidence 455666666654322 5555666666662211 12356777777754 454544433333
Q ss_pred HHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019 338 KAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (520)
Q Consensus 338 ~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La 386 (520)
.... ..+. ..+..+.+..++..+-.+..+.+.+|..++..+++.+.
T Consensus 396 ~r~~~~~~~---~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 396 DRKLRKLGP---KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred HHHHhhcCC---cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 3322 2221 23344445555555544443345688888888887765
No 171
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=81.98 E-value=13 Score=33.92 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=84.1
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCch
Q 010019 314 ARALVHSLHA-GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSN 391 (520)
Q Consensus 314 l~~Lv~lL~~-~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~ 391 (520)
++.++..|.. ...+++...+..++..+- +..++...+ -.-+.+-..+..... +-...++.+|..|= +.++.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~----d~~i~~~~~l~~lfp~~~dv 77 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEM----DSLIIAFSALTALFPGPPDV 77 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHC----CHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccc----hhHHHHHHHHHHHhCCCHHH
Confidence 4455555553 223556667777776663 222222221 111333444443222 23345666666664 66777
Q ss_pred HHHHH-hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 010019 392 KSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCFMI 469 (520)
Q Consensus 392 k~~Iv-~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~-vqk~A~~aL 469 (520)
...+. ..|.++.++.++.+++++..++..++.+|..=|. + +.++..+...+.+.|-+.++.. .+.. ++--|+..|
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d-~~~r~~I~~~~~~~L~~~~~~~-~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-D-KSCRTFISKNYVSWLKELYKNS-KDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-S-HHHHHCCHHHCHHHHHHHTTTC-C-HH-CHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-c-HHHHHHHHHHHHHHHHHHHccc-cchHHHHHHHHHHH
Confidence 77764 5566788888888777889999999999987664 4 4555555556778888877544 3333 555555544
Q ss_pred H
Q 010019 470 R 470 (520)
Q Consensus 470 ~ 470 (520)
.
T Consensus 155 ~ 155 (157)
T PF11701_consen 155 C 155 (157)
T ss_dssp H
T ss_pred h
Confidence 3
No 172
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.57 E-value=18 Score=35.78 Aligned_cols=159 Identities=11% Similarity=0.100 Sum_probs=86.5
Q ss_pred ChhhHHHHHhcC--CHHHHHHHHhcCC----hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cC-CHHHHHHHH
Q 010019 250 NEVVKESYMELK--IDELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IG-IARALVHSL 321 (520)
Q Consensus 250 ~e~nr~~i~~~g--~i~~Lv~lL~~~~----~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g-~l~~Lv~lL 321 (520)
++..-..+...+ +...+..++.... ...+.-+++++.|+-.....+. .+.. .+ .+...+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~----------~~~~~~~~~i~~~~~~~ 162 (268)
T PF08324_consen 93 HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ----------LLLSHFDSSILELLSSL 162 (268)
T ss_dssp CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH----------HHHCTHHTCHHHHCHCC
T ss_pred CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH----------HHHhcccchHHHHHHHH
Confidence 444434443332 3455566665542 2555558999999988765543 3332 12 222332222
Q ss_pred hcCC---ChhHHHHHHHHHHHhccChhhHHHHHhcC---ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHH
Q 010019 322 HAGL---SSPSLISASIALKAVAVNDEICKSVAENG---GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI 395 (520)
Q Consensus 322 ~~~~---~~~~~~~a~~aL~~La~~~e~~~~i~~~G---gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I 395 (520)
.... +..++..++..+.|+++.--.... .+.. .+..+++.+.. ...+.+.+..++-+|++|...+......
T Consensus 163 ~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~~~~~ll~~i~~~~~~--~~~d~Ea~~R~LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 163 LSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEEWQSELLSSIIEVLSR--EESDEEALYRLLVALGTLLSSSDSAKQL 239 (268)
T ss_dssp CTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHCHC--CHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcc--ccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence 2221 356777888888999842111100 1111 12344443222 2234699999999999999777766666
Q ss_pred HhcCCHHHHHHHHhccCCCHHHHHHH
Q 010019 396 IENGGMDKLIVVSARFSDDASVLQEV 421 (520)
Q Consensus 396 v~~g~l~~Lv~lL~~~~~~~~v~~~a 421 (520)
.+.=++...+........++.+++-+
T Consensus 240 ~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 240 AKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp CCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHcChHHHHHHHHhcccchHHHHHh
Confidence 66444555555555456677776543
No 173
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.44 E-value=14 Score=30.78 Aligned_cols=74 Identities=5% Similarity=0.084 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC--CHHHHHHHH
Q 010019 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN--GVEKLIRQA 495 (520)
Q Consensus 418 ~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~--G~~~lL~~~ 495 (520)
++.++.+|+..+..-+.......+ -.+++++..+.. .++.|...||.+|.|++.. .+..++.. .+.+.|.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D--~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDD--QDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKL 76 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 456777787776655555444433 367888888854 6899999999999999632 22334432 455555554
Q ss_pred HH
Q 010019 496 KE 497 (520)
Q Consensus 496 ~~ 497 (520)
..
T Consensus 77 ~~ 78 (97)
T PF12755_consen 77 SA 78 (97)
T ss_pred Hc
Confidence 43
No 174
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=80.69 E-value=63 Score=32.07 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=91.1
Q ss_pred hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC--
Q 010019 215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD-- 292 (520)
Q Consensus 215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d-- 292 (520)
....++.++..|...++.+-+...|..+++.+. .+. ..+.|-+..+....++....-.+|..+--.+
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 345789999999877777777667777776643 221 2233333332211133232333333332111
Q ss_pred ---CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCC
Q 010019 293 ---DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ 369 (520)
Q Consensus 293 ---d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~ 369 (520)
.+..+|.+++.-.. ...+-+..|-..|...+.+..-+. .++++| .+.||=..+..+......
T Consensus 134 ~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry--~amF~L----------Rn~g~EeaI~al~~~l~~- 198 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERY--RAMFYL----------RNIGTEEAINALIDGLAD- 198 (289)
T ss_pred ccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHH--hhhhHh----------hccCcHHHHHHHHHhccc-
Confidence 11222322222111 011223333333333222212111 333333 233443333333332222
Q ss_pred CcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
+++-.+..+..+|+.|-+. -++|.|.+.|..-..+|-|+-.|+-+|..++.
T Consensus 199 ~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred chHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 2456778888888876432 35788888888777789999999999998884
No 175
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=79.78 E-value=20 Score=32.51 Aligned_cols=135 Identities=17% Similarity=0.198 Sum_probs=73.3
Q ss_pred CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh
Q 010019 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297 (520)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~ 297 (520)
.+..++..|......+++...+.-++..+- +..++.+.+ -.-+.+-..+.....+....++.++..|--.. +
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~---~- 75 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGP---P- 75 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT---H-
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCC---H-
Confidence 455666666542334455555555555542 445555432 12233333343333345555666666655322 1
Q ss_pred hhhhchHHHHHH-HcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhcc
Q 010019 298 ASQVYGYARRFA-KIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS 366 (520)
Q Consensus 298 ~~~a~~~a~~i~-~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~ 366 (520)
+-+-.+. ..|.++.++.++.+.. +...+..++-+|.. |..++.|+..+...|++.|-+.++..
T Consensus 76 -----dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~a-Ac~d~~~r~~I~~~~~~~L~~~~~~~ 140 (157)
T PF11701_consen 76 -----DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSA-ACIDKSCRTFISKNYVSWLKELYKNS 140 (157)
T ss_dssp -----HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH-HTTSHHHHHCCHHHCHHHHHHHTTTC
T ss_pred -----HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHHHHHHHccc
Confidence 2222444 6788999999988333 45555555555544 44556666666667788888887653
No 176
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=78.41 E-value=46 Score=37.33 Aligned_cols=246 Identities=12% Similarity=0.020 Sum_probs=131.3
Q ss_pred CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHH
Q 010019 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL 197 (520)
Q Consensus 118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al 197 (520)
.+.+.+|++|-.... .|..+..+-+..|-++.. ..+.|.+. .-..|.|++.|..... -+. .....
T Consensus 270 D~~~~aLrfLD~l~~--------kdn~qKs~Flk~Ls~~ip---~fp~rv~~--~kiLP~L~~el~n~~~-vp~-~LP~v 334 (700)
T KOG2137|consen 270 DPGLKALRFLDDLPQ--------KDNSQKSSFLKGLSKLIP---TFPARVLF--QKILPTLVAELVNTKM-VPI-VLPLV 334 (700)
T ss_pred Cchhhhhhhcccccc--------cCcHHHHHHHHHHHHhhc---cCCHHHHH--HhhhhHHHHHhccccc-ccc-ccchh
Confidence 445567777766543 356667777777777776 45556554 3578888888753210 000 11111
Q ss_pred HHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHH---HHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCC
Q 010019 198 KTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG---FAVVAASATGNEVVKESYMELKIDELILEILSRQR 274 (520)
Q Consensus 198 ~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a---~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~ 274 (520)
..|+.... .........|.|..+++. +...++...- ..+|.+ .....-++..++|.|...++..+
T Consensus 335 ~~i~~~~s-----~~~~~~~~~p~l~pi~~~-~~~~~~~l~i~e~mdlL~~------Kt~~e~~~~~IlplL~~S~~~~~ 402 (700)
T KOG2137|consen 335 LLIAEGLS-----QNEFGPKMLPALKPIYSA-SDPKQALLFILENMDLLKE------KTPPEEVKEKILPLLYRSLEDSD 402 (700)
T ss_pred hhhhhccc-----hhhhhhhhhHHHHHHhcc-CCcccchhhHHhhHHHHHh------hCChHHHHHHHHHHHHHHhcCcc
Confidence 22222110 112223345566666653 2222221111 111211 11223334466777777776644
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcC
Q 010019 275 NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354 (520)
Q Consensus 275 ~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~G 354 (520)
..++..+...+-..+.-=|. ..++.-.+|.|-++--.+++..++.+++.++..+. +.+ -..-
T Consensus 403 ~~iQ~~~L~~lptv~e~iD~------------~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~l---D~~~ 464 (700)
T KOG2137|consen 403 VQIQELALQILPTVAESIDV------------PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRL---DKAA 464 (700)
T ss_pred hhhHHHHHHhhhHHHHhccH------------HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHH---HHHH
Confidence 45555666666555533221 34555678888888554456678889999998887 222 2233
Q ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHh
Q 010019 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409 (520)
Q Consensus 355 gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~ 409 (520)
.++.+.-++... ...++.++...+.+..++....-....+.-..++|.++-+..
T Consensus 465 v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 465 VLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred hHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 334444443322 112247888888888888755444334444568888887765
No 177
>PRK09169 hypothetical protein; Validated
Probab=78.09 E-value=2.2e+02 Score=36.73 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019 445 GDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE 500 (520)
Q Consensus 445 i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~ 500 (520)
+.-.+.+|.+.+..... +.++..|.--..++++.+..|-..|+...|. ++.+-+
T Consensus 459 LaN~LnALsKWp~~~~c-~~aa~~LA~rl~~~~~l~~af~~Q~lAN~Ln-ALsKwp 512 (2316)
T PRK09169 459 LANALNALSKWPDEAAC-RRAAEALAARLAGDAELRQALDAQGLANALN-ALSKWP 512 (2316)
T ss_pred HHHHHHHHhcCCchHHH-HHHHHHHHHHHhcChhhhhhcChHHHHHHHH-HHhcCC
Confidence 44556667777654433 4444444444467888888888888887774 444444
No 178
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=1.4e+02 Score=34.41 Aligned_cols=215 Identities=10% Similarity=0.050 Sum_probs=113.9
Q ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH
Q 010019 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (520)
Q Consensus 230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~ 309 (520)
.+.+-+...|+..++.+..+- .-+..+...+++...++.|+..+.-+--+|...+..||. +.
T Consensus 738 d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-----------------vy 799 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-----------------VY 799 (982)
T ss_pred CCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-----------------hc
Confidence 344566677777777776422 334566677888888888877655455566666666662 22
Q ss_pred HcCCHHHHHHHHhcCCC-h---hHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010019 310 KIGIARALVHSLHAGLS-S---PSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (520)
Q Consensus 310 ~~g~l~~Lv~lL~~~~~-~---~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~ 384 (520)
....+|.|.+--.+.++ . ..++ +=-++.+++ ...|.+..-.+ +|+...-.+.++++......+|+.|++
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lk-VGEai~k~~qa~Gel~~~y~~-----~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLK-VGEAILKVAQALGELVFKYKA-----VLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceeh-HHHHHHHHHHHhccHHHHHHH-----HHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 23567777763332221 1 1111 113333333 22232222221 333332222223333567788999988
Q ss_pred hhCCC--chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh---cCcHHHHHHHHHhCCCCH
Q 010019 385 LAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME---AGSGDLAIQAMLKFPNAQ 459 (520)
Q Consensus 385 La~~~--~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~---~G~i~~lv~~L~~~~~~~ 459 (520)
|+.-- .....+.+ .+..++.+.+. .+++.+++.|+-.|..+-.+..+-.-.+.. -.....+...+..|+ +.
T Consensus 874 Lcq~~a~~vsd~~~e--v~~~Il~l~~~-d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~-dd 949 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHE--VLQLILSLETT-DGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHD-DD 949 (982)
T ss_pred HHHHHhhhhhHHHHH--HHHHHHHHHcc-CCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCc-hh
Confidence 87211 11123332 45666666653 567889999999988776543332222222 123445555566664 34
Q ss_pred HHHHHHHHHHHHH
Q 010019 460 QLQRSSCFMIRNL 472 (520)
Q Consensus 460 ~vqk~A~~aL~nL 472 (520)
.+...||.+|-.+
T Consensus 950 ~~klhaql~leei 962 (982)
T KOG4653|consen 950 GLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHHHH
Confidence 5566677766544
No 179
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.62 E-value=7.5 Score=37.87 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHhcCC---HHHHHHHHhcc---CCCHHHHHHHHHHHHHHhcCCHHHHHHH-HhcCcHH
Q 010019 374 VARICCSLLSKLAGSDSNKSAIIENGG---MDKLIVVSARF---SDDASVLQEVMSIITVLSLRSPENAARA-MEAGSGD 446 (520)
Q Consensus 374 v~~~al~aL~~La~~~~~k~~Iv~~g~---l~~Lv~lL~~~---~~~~~v~~~a~~aL~nLa~~~~~~~~~i-~~~G~i~ 446 (520)
-++-++.+|..|+..+.|.+.|...+- ++.|+..|.++ .+++..+|-|+..|.+||..+...+..+ .+.+.+.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 467899999999999999998887665 45555555443 3578899999999999999887777554 4456788
Q ss_pred HHHHHHHh
Q 010019 447 LAIQAMLK 454 (520)
Q Consensus 447 ~lv~~L~~ 454 (520)
.|+..+..
T Consensus 220 ~Li~FiE~ 227 (257)
T PF12031_consen 220 HLIAFIED 227 (257)
T ss_pred HHHHHHHH
Confidence 88888865
No 180
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.59 E-value=45 Score=38.39 Aligned_cols=179 Identities=12% Similarity=0.116 Sum_probs=103.1
Q ss_pred hHHHHHhcCcHHHHHHHHhhccc-----CcHHHHHHHHHHHHHhhcccccchhHHh------c--CCcHHHHHHH-hcCC
Q 010019 165 NAAVATKNGGVELVCSICYKMRC-----GSKRVLDSCLKTMALLVHDVQSTETFRT------G--GGPKLLVNIL-IDGN 230 (520)
Q Consensus 165 ~r~~i~~~Gaip~Lv~lL~~~~~-----~~~~~~~~al~~La~l~~~~~~~~~i~~------~--ggi~~Lv~lL-~~~~ 230 (520)
...-+.+.|++..++++++.... .-.++...||.+|+-+..=-.-+.++.. . .|+..++..- -+++
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 34567888999999999875431 1235677888888755321000122221 1 2566555542 2222
Q ss_pred -CChHHHHHHHHHHHHHhcCChhhHHHHHhc-CC---HHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCCcchhhhhhchH
Q 010019 231 -EDPEILNSGFAVVAASATGNEVVKESYMEL-KI---DELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGY 304 (520)
Q Consensus 231 -~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~---i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~ 304 (520)
-+++++..|+.+|.++....+.+|...+.. |- -+. ..|..+. .+.+.+..+-.|
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r--~~l~~~~ks~~le~~l~~mw------------------ 732 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR--IFLGAGTKSAKLEQVLRQMW------------------ 732 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc--ccccCCCchHHHHHHHHHHH------------------
Confidence 379999999999999766665676544321 11 000 0111111 122222222222
Q ss_pred HHHHH-HcCCHHHHHHHHhcCC---Ch-hHHHHHHHHHHHhccChhhHHHHHhcCChH--HHHHHHhc
Q 010019 305 ARRFA-KIGIARALVHSLHAGL---SS-PSLISASIALKAVAVNDEICKSVAENGGID--ALLRCIDD 365 (520)
Q Consensus 305 a~~i~-~~g~l~~Lv~lL~~~~---~~-~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~--~Ll~lL~~ 365 (520)
.-+ ..+||..|++||+-.. +. .+..-||.+|..|+.+++.++.+.+.-.+. .+-.+|+.
T Consensus 733 --~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~e 798 (1516)
T KOG1832|consen 733 --EAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAE 798 (1516)
T ss_pred --HHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhC
Confidence 333 5689999999998532 22 456779999999999999988877654332 23445543
No 181
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=77.02 E-value=45 Score=30.53 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=69.6
Q ss_pred CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---
Q 010019 400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG--SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA--- 474 (520)
Q Consensus 400 ~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G--~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~--- 474 (520)
.+..+..+|+ ++++..+-.++..+..++..++ ...+.+.| .+..++..++. ++.+.+.+.++.++..+..
T Consensus 26 l~~ri~~LL~--s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 26 LVTRINSLLQ--SKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHhC--CCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 4566778887 6678878888888887775321 23333444 36777878876 4667788889998888863
Q ss_pred hChhhHHHHHhCCHHHHHHHHHHhCc--chHHHHHHHHHHc
Q 010019 475 RNPENRKLLLSNGVEKLIRQAKENHE--ICKDAATDALRDL 513 (520)
Q Consensus 475 ~~~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~aALr~L 513 (520)
+.|+...++.--.+..++.-++..-. .|...+-.+|..|
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATL 141 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 46776666665555555555554444 5555555555543
No 182
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=75.87 E-value=96 Score=31.56 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=82.4
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhccC---hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh---
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAVN---DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--- 386 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~---~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--- 386 (520)
.+..+...++.+.. +-+.-|+.++.-|+.. .+....+.+ ...++|...+.+.... ..+...|+.+|+-++
T Consensus 87 L~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~--~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 87 LLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSAS--PKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccc--hHHHHHHHHHHHHHHHhh
Confidence 46677777777653 2334455555555533 233444554 3457888888875433 355556666776664
Q ss_pred CCC-chHHHHHhcCCHHHHHHH--Hhc--------cCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHhcCcHHHHHHHHHh
Q 010019 387 GSD-SNKSAIIENGGMDKLIVV--SAR--------FSDDASVLQEVMSIITVLSLRSPE-NAARAMEAGSGDLAIQAMLK 454 (520)
Q Consensus 387 ~~~-~~k~~Iv~~g~l~~Lv~l--L~~--------~~~~~~v~~~a~~aL~nLa~~~~~-~~~~i~~~G~i~~lv~~L~~ 454 (520)
+.+ +......+ .++.+... ++. ..+++.+.-.|+.+-+-|...-|. ...... ...++.+..+|.
T Consensus 163 ~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~- 238 (309)
T PF05004_consen 163 GSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLD- 238 (309)
T ss_pred cCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhc-
Confidence 222 22221111 22322111 111 112356777766555544433333 223332 335788999885
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 010019 455 FPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 455 ~~~~~~vqk~A~~aL~nL~~ 474 (520)
+++..|+..|..+|+-|..
T Consensus 239 -s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 239 -SDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred -CCCHHHHHHHHHHHHHHHH
Confidence 3689999999999988853
No 183
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=75.30 E-value=1.4e+02 Score=34.34 Aligned_cols=125 Identities=11% Similarity=0.170 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ 450 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~ 450 (520)
|.++.+-+---|.+.+.... ..++. ++..+..=++ ..++.++-.|+.+++-| +.++.... .++++.+
T Consensus 68 d~ElKrL~ylYl~~yak~~P-~~~lL---avNti~kDl~--d~N~~iR~~AlR~ls~l--~~~el~~~-----~~~~ik~ 134 (757)
T COG5096 68 DVELKRLLYLYLERYAKLKP-ELALL---AVNTIQKDLQ--DPNEEIRGFALRTLSLL--RVKELLGN-----IIDPIKK 134 (757)
T ss_pred CHHHHHHHHHHHHHHhccCH-HHHHH---HHHHHHhhcc--CCCHHHHHHHHHHHHhc--ChHHHHHH-----HHHHHHH
Confidence 34677766666666664333 12222 3556666666 67899999999888844 44444332 3567777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh-CcchHHHHHHHHHHc
Q 010019 451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN-HEICKDAATDALRDL 513 (520)
Q Consensus 451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~-h~~~~~~a~aALr~L 513 (520)
.+. | .++.|.|.|+.+|..+=..+++ .+.+.|....+..++.. .|.|...|..+|+.+
T Consensus 135 ~l~-d-~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 135 LLT-D-PHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred Hcc-C-CcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 773 4 5789999999999999544544 35677888888877744 478888888888764
No 184
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=74.52 E-value=35 Score=31.56 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHH
Q 010019 327 SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV 406 (520)
Q Consensus 327 ~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~ 406 (520)
+.+..+++.+++-|+..-.+ +++ .-++.+...|.+ +++.|.+.|+-+|..|...+-.|. +...+..++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~---~ve-~~~~~l~~~L~D----~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~ 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN---LVE-PYLPNLYKCLRD----EDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILK 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH---HHH-hHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHH
Confidence 45778888899988854332 232 225677777876 246899999999999986653332 1112367777
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcC
Q 010019 407 VSARFSDDASVLQEVMSIITVLSLR 431 (520)
Q Consensus 407 lL~~~~~~~~v~~~a~~aL~nLa~~ 431 (520)
++. .+++.|+..|...+..+...
T Consensus 71 ~l~--D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLV--DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHc--CCCHHHHHHHHHHHHHHHHh
Confidence 786 67899999999999999875
No 185
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=74.34 E-value=1e+02 Score=31.05 Aligned_cols=171 Identities=16% Similarity=0.096 Sum_probs=96.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC--h
Q 010019 267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--D 344 (520)
Q Consensus 267 v~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~--~ 344 (520)
+..+++.+..+++.|...|+-.|.-|. .+++ ..++.+...++.. +..++..++.+|..+... .
T Consensus 33 ~P~v~~~~~~vR~~al~cLGl~~Lld~-------------~~a~-~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 33 LPAVQSSDPAVRELALKCLGLCCLLDK-------------ELAK-EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhCh-------------HHHH-HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCc
Confidence 366677666777778888887776553 2332 2367777888654 567888889999887732 2
Q ss_pred hhHHHHHh---cCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHH-hcc-CCCHHHHH
Q 010019 345 EICKSVAE---NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS-ARF-SDDASVLQ 419 (520)
Q Consensus 345 e~~~~i~~---~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL-~~~-~~~~~v~~ 419 (520)
+....... ..+...+++++....+..+++++..++..++.|-.++.... ....+..|+-+- ... .+++.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 22211111 11233444444433333356899999999999865443222 011222332222 111 13456555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC
Q 010019 420 EVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP 456 (520)
Q Consensus 420 ~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~ 456 (520)
---..+-..|..+++|+..+ ..+.++.+..++..+.
T Consensus 175 ~L~~Ffp~y~~s~~~~Q~~l-~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 175 CLSVFFPVYASSSPENQERL-AEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHHHhCcc
Confidence 55555667787777776544 4557777777666544
No 186
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=73.24 E-value=1.5e+02 Score=32.68 Aligned_cols=74 Identities=12% Similarity=0.237 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHhcC--CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC---C
Q 010019 413 DDASVLQEVMSIITVLSLR--SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN---G 487 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~--~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~---G 487 (520)
++.-|+..|+.+|.-.++. ++-..+. ....+-+.+.. .+.+|...|..+++|| ++.+-+..+.+. |
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d~~~~~s-----v~~~lkRclnD--~DdeVRdrAsf~l~~~--~~~da~~pl~~sd~~~ 569 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISDVVSPQS-----VENALKRCLND--QDDEVRDRASFLLRNM--RLSDACEPLFSSDELG 569 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccccccHHH-----HHHHHHHHhhc--ccHHHHHHHHHHHHhh--hhhhhhhccccccccC
Confidence 4667888889999776653 1111111 12233334432 4678999999999998 344444444432 4
Q ss_pred HHHHHHHH
Q 010019 488 VEKLIRQA 495 (520)
Q Consensus 488 ~~~lL~~~ 495 (520)
-.+.+..-
T Consensus 570 dipsle~~ 577 (898)
T COG5240 570 DIPSLELE 577 (898)
T ss_pred CcchhHHh
Confidence 44444433
No 187
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=72.03 E-value=72 Score=31.44 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=45.7
Q ss_pred cCcHHHHHHHHhhcccCcHHH----HHHH-HHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010019 172 NGGVELVCSICYKMRCGSKRV----LDSC-LKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (520)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~~~~~----~~~a-l~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~ 246 (520)
.-++|+|+++++..+..-..+ ...- -..++++ -.|-++.+-+++.+..-+.=+...++.++..+
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv-----------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l 140 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV-----------GDGDIEPLKELIEDPDADEYVRMAAISALAFL 140 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH-----------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 358999999997642100000 1111 1112222 23457778888876555566677788888888
Q ss_pred hcCChhhHHHHHh
Q 010019 247 ATGNEVVKESYME 259 (520)
Q Consensus 247 ~~~~e~nr~~i~~ 259 (520)
...++..|+.+++
T Consensus 141 ~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 141 VHEGPISREEVIQ 153 (249)
T ss_pred HHcCCCCHHHHHH
Confidence 7777777776654
No 188
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.91 E-value=2e+02 Score=32.91 Aligned_cols=211 Identities=14% Similarity=0.153 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCC
Q 010019 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGI 313 (520)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~ 313 (520)
.+|..-+..+...|..++..|..+ |..+..+|.+.++.+.-+|+.+|-+|+.+.. .+.. +
T Consensus 221 ~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-------------alk~--A 280 (948)
T KOG1058|consen 221 SLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-------------ALKA--A 280 (948)
T ss_pred HHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccCCHH-------------HHHH--H
Confidence 344444455555554444444333 3456666666555555556666666664431 1111 2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHH
Q 010019 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS 393 (520)
Q Consensus 314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~ 393 (520)
...+++++-..+|..++-=..--|..|.. ....+.+ |-+--++++|+. ++-++..-++...--|+.+-. -.
T Consensus 281 a~~~i~l~~kesdnnvklIvldrl~~l~~---~~~~il~-~l~mDvLrvLss----~dldvr~Ktldi~ldLvssrN-ve 351 (948)
T KOG1058|consen 281 ASTYIDLLVKESDNNVKLIVLDRLSELKA---LHEKILQ-GLIMDVLRVLSS----PDLDVRSKTLDIALDLVSSRN-VE 351 (948)
T ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhh---hhHHHHH-HHHHHHHHHcCc----ccccHHHHHHHHHHhhhhhcc-HH
Confidence 34444554444433332222222233321 1112222 222333444443 123566666665555543321 12
Q ss_pred HHHhcCCHHHHHHHHhccCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010019 394 AIIENGGMDKLIVVSARFSD----DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMI 469 (520)
Q Consensus 394 ~Iv~~g~l~~Lv~lL~~~~~----~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL 469 (520)
.|+.. .=-++++.|.. +..-+..-..+|...+.+-|+.+..+ ++.+++.+.. .++..-......+
T Consensus 352 div~~----Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv-----V~~ll~fisD--~N~~aas~vl~Fv 420 (948)
T KOG1058|consen 352 DIVQF----LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV-----VSLLLDFISD--SNEAAASDVLMFV 420 (948)
T ss_pred HHHHH----HHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH-----HHHHHHHhcc--CCHHHHHHHHHHH
Confidence 22210 00112333322 23345556667777776666665544 3555555532 2333222233344
Q ss_pred HHHhhhChhhHHHHH
Q 010019 470 RNLVARNPENRKLLL 484 (520)
Q Consensus 470 ~nL~~~~~e~~~~l~ 484 (520)
+......|..|..++
T Consensus 421 rE~iek~p~Lr~~ii 435 (948)
T KOG1058|consen 421 REAIEKFPNLRASII 435 (948)
T ss_pred HHHHHhCchHHHHHH
Confidence 444444555554444
No 189
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=70.86 E-value=22 Score=34.37 Aligned_cols=146 Identities=12% Similarity=0.201 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC---Ch-HHH-HHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc
Q 010019 237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ---RN-DSI-QSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI 311 (520)
Q Consensus 237 ~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~---~~-~~~-~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~ 311 (520)
+.++..+..+++ |++.|..|.++..---|-..|... .. +.+ -.+.+++..|..+|+..+ -+.+...
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~v--------i~fLltT 188 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYV--------IKFLLTT 188 (315)
T ss_pred HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHH--------HHHHHhh
Confidence 455555555554 778899999887655555555432 11 433 358899999999987644 2344456
Q ss_pred CCHHHHHHHHhcCCChhHHHH-HHHHHHHhccChh----hHHHHHhcCChHHHHHHHhcc-CCCCcHHHHHHHHHHHHHh
Q 010019 312 GIARALVHSLHAGLSSPSLIS-ASIALKAVAVNDE----ICKSVAENGGIDALLRCIDDS-GLQGNKTVARICCSLLSKL 385 (520)
Q Consensus 312 g~l~~Lv~lL~~~~~~~~~~~-a~~aL~~La~~~e----~~~~i~~~Ggv~~Ll~lL~~~-~~~~~~~v~~~al~aL~~L 385 (520)
..+|.++..+..++. .-+. +...+..+..+|. .|+.+-+--+|..+++-|..+ .+.+...+.+.++++--.|
T Consensus 189 eivPLcLrIme~gSE--lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRL 266 (315)
T COG5209 189 EIVPLCLRIMELGSE--LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRL 266 (315)
T ss_pred hHHHHHHHHHHhhhH--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheee
Confidence 789999999988752 2222 3333333334443 344443333333333222110 0001124555565555555
Q ss_pred hCCCchHH
Q 010019 386 AGSDSNKS 393 (520)
Q Consensus 386 a~~~~~k~ 393 (520)
+..+..|.
T Consensus 267 sd~p~aR~ 274 (315)
T COG5209 267 SDKPHARA 274 (315)
T ss_pred cCCHhHHH
Confidence 55554443
No 190
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=70.26 E-value=83 Score=33.89 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhh-----CCCchHHHHHhcCC--HHHHHHHHhc-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Q 010019 373 TVARICCSLLSKLA-----GSDSNKSAIIENGG--MDKLIVVSAR-FSDDASVLQEVMSIITVLSLRSPENAARAMEAGS 444 (520)
Q Consensus 373 ~v~~~al~aL~~La-----~~~~~k~~Iv~~g~--l~~Lv~lL~~-~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~ 444 (520)
..+..+.++++|++ +-|..+.+--...| +..++++-.. ..++..|+.++..+|.|+. ...+.+.+.|-
T Consensus 448 n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll----Qvlq~i~~~~~ 523 (728)
T KOG4535|consen 448 NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL----QFLQPIEKPTF 523 (728)
T ss_pred hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH----HHHHHhhhccH
Confidence 46677888888885 33432322222112 3344443222 2346789999999999987 34444555544
Q ss_pred HHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhhChhh-HHHHH-hCCHHHHHHHHHHhCcc--hHHHHHHHHH
Q 010019 445 GDLAIQAMLK------FPNAQQLQRSSCFMIRNLVARNPEN-RKLLL-SNGVEKLIRQAKENHEI--CKDAATDALR 511 (520)
Q Consensus 445 i~~lv~~L~~------~~~~~~vqk~A~~aL~nL~~~~~e~-~~~l~-~~G~~~lL~~~~~~h~~--~~~~a~aALr 511 (520)
.+.+-..|.. .+....||-+||.+|.||.. |+.. -+.+- .--+++.|-.+...|.. ..-.|++||-
T Consensus 524 ~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk-n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 524 AEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK-NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHHHHHHhcccceecccccccchHHHHHHHHhhc-CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 3333333322 24578899999999999965 3332 11111 11345666666655542 3345666664
No 191
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.02 E-value=1.2e+02 Score=34.90 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcc
Q 010019 146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD 206 (520)
Q Consensus 146 ~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~ 206 (520)
...++..|+.+.++ ......+...+.+.+.++.|+.. |+=+-.+|++.++++++-
T Consensus 744 k~~gL~~l~~l~e~---r~~~~~~~~ekvl~i~ld~Lkde---dsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 744 KGYGLQMLRHLIEK---RKKATLIQGEKVLAIALDTLKDE---DSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred hHHHHHHHHHHHHh---cchhhhhhHHHHHHHHHHHhccc---CceeeHHHHHHHHHHHHh
Confidence 45678888888874 35566677788888888888863 655667788888888743
No 192
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=68.85 E-value=3.5 Score=35.69 Aligned_cols=50 Identities=30% Similarity=0.506 Sum_probs=34.1
Q ss_pred CCchhhhhccCccccccccccccccccCCCCCCCCCCCCCCcceecccccCCCCCcchhhhhhHHHH--HHHHHHHHh
Q 010019 3 TVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAF--DEVVKENME 78 (520)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetf--De~V~eni~ 78 (520)
.+|+|||+-+|.+-+.-++-|.- + .+.-||-||+ |.|. |+| ++.|-|.|.
T Consensus 47 qiP~SY~~t~Sksi~mfL~mqgI-----------------~-LleGDVwGHR-------KDin-EYy~i~~~vi~~I~ 98 (131)
T PF08004_consen 47 QIPPSYYKTLSKSIKMFLEMQGI-----------------E-LLEGDVWGHR-------KDIN-EYYEIPESVIERIK 98 (131)
T ss_pred eCChHHHHHHhHHHHHHHHhcCc-----------------e-eecccccccc-------CCCc-ccccCCHHHHHHHH
Confidence 47999999999998876665541 1 1556999998 6664 455 555544443
No 193
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.72 E-value=62 Score=38.41 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=95.5
Q ss_pred CHHHHHHHHhcC---CChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC
Q 010019 313 IARALVHSLHAG---LSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS 388 (520)
Q Consensus 313 ~l~~Lv~lL~~~---~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~ 388 (520)
..|.++++.+.+ ++++++..|..||+.+. .+.++|..- .+.|+..|..++. +.+..++.-+++-||..
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~---p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPS---PRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCC---ceeeecchheccchhhh
Confidence 467777777653 36789999999999887 788888664 4799999997643 47888888888888743
Q ss_pred CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHH
Q 010019 389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM 468 (520)
Q Consensus 389 ~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~a 468 (520)
-.| +++ -.-+.|..-|+ ..++.|++.|..+|++|-+.+ .+.-.|.+..+...+.. .++++.--|-..
T Consensus 992 fpn---lie-~~T~~Ly~rL~--D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D--~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen 992 FPN---LIE-PWTEHLYRRLR--DESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLED--PNAEISDLAKSF 1058 (1251)
T ss_pred ccc---ccc-hhhHHHHHHhc--CccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcC--CcHHHHHHHHHH
Confidence 221 222 24556667676 678999999999999999743 22225667777666754 456654444433
Q ss_pred HHHH
Q 010019 469 IRNL 472 (520)
Q Consensus 469 L~nL 472 (520)
...|
T Consensus 1059 F~El 1062 (1251)
T KOG0414|consen 1059 FKEL 1062 (1251)
T ss_pred HHHh
Confidence 3333
No 194
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.84 E-value=2.5e+02 Score=32.95 Aligned_cols=186 Identities=13% Similarity=0.111 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH
Q 010019 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (520)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~ 310 (520)
..-++..|||+++..|...=.+...+ ..+.....+.|... .-.+...|+-||..+-.+.... +++.+..+
T Consensus 475 ~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~------~e~~~~hv- 545 (1010)
T KOG1991|consen 475 YGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA------DEKVSAHV- 545 (1010)
T ss_pred hhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh------hhhHhhhh-
Confidence 34567789999998874322222222 34667777788743 3388888888999887765421 11112222
Q ss_pred cCCHHHHHHHHhcCCChhHHHHHHHHH-HH----hc-cChhhHHHHHhcCChHHHHHHHhcc--CCCCcHHHHHHHHHHH
Q 010019 311 IGIARALVHSLHAGLSSPSLISASIAL-KA----VA-VNDEICKSVAENGGIDALLRCIDDS--GLQGNKTVARICCSLL 382 (520)
Q Consensus 311 ~g~l~~Lv~lL~~~~~~~~~~~a~~aL-~~----La-~~~e~~~~i~~~Ggv~~Ll~lL~~~--~~~~~~~v~~~al~aL 382 (520)
-+.++.|+.+.+... .+.+..+...+ .. |+ .-.+.|+.++ ...++++... .++.+.+=.-.|.|+|
T Consensus 546 p~~mq~lL~L~ne~E-nd~Lt~vme~iV~~fseElsPfA~eL~q~La-----~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 546 PPIMQELLKLSNEVE-NDDLTNVMEKIVCKFSEELSPFAVELCQNLA-----ETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred hHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHhhchhHHHHHHHHH-----HHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 134566777776653 22233332222 11 22 1223444444 3556666531 1111123334566666
Q ss_pred HHhh---CCCchHHHHH---hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019 383 SKLA---GSDSNKSAII---ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (520)
Q Consensus 383 ~~La---~~~~~k~~Iv---~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~ 434 (520)
+.+. .+-++...+. +.-.+|.+-.+|+ .+-.++-+.++..+..++.-.++
T Consensus 620 ~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~--~~i~dfyeE~~ei~~~~t~~~~~ 675 (1010)
T KOG1991|consen 620 RTISTILLSLENHPEVLKQLEPIVLPVIGFILK--NDITDFYEELLEIVSSLTFLSKE 675 (1010)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHhhhhhhhcc
Confidence 6654 3333444332 2234566666777 34567888899998888775543
No 195
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=66.89 E-value=45 Score=37.22 Aligned_cols=140 Identities=10% Similarity=0.129 Sum_probs=74.5
Q ss_pred HHHHHHHHhcC---CChhHHHHHHHHHHHhcc----Ch------hhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHH
Q 010019 314 ARALVHSLHAG---LSSPSLISASIALKAVAV----ND------EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS 380 (520)
Q Consensus 314 l~~Lv~lL~~~---~~~~~~~~a~~aL~~La~----~~------e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~ 380 (520)
+..+..+++.. .++.+...++.+++.|.. .. ..+...+....++.+...+....+..+.+-...++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 44444555421 123455556666666652 21 011122223345677777663222223456677888
Q ss_pred HHHHhhCCCchHHHHHhcCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCH
Q 010019 381 LLSKLAGSDSNKSAIIENGGMDKLIVVSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQ 459 (520)
Q Consensus 381 aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~ 459 (520)
+|+|+.. + ..++.+...+... .....++-.|+++|..++...|+... +.++.++.+...+.
T Consensus 513 aLgN~g~-~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 513 ALGNLGH-P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHT--G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-H
T ss_pred HhhccCC-c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCCh
Confidence 8888742 1 2456666666532 23678899999999988776665443 45667777777778
Q ss_pred HHHHHHHHHHHH
Q 010019 460 QLQRSSCFMIRN 471 (520)
Q Consensus 460 ~vqk~A~~aL~n 471 (520)
++.-.|..+|-.
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 876666555443
No 196
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=66.28 E-value=6.9 Score=29.27 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHH
Q 010019 70 DEVVKENMEDLGMEPTEALQDAIQT 94 (520)
Q Consensus 70 De~V~eni~~~~m~p~eal~~aI~q 94 (520)
|+-+-.-+-++.|+||||++.++.|
T Consensus 21 e~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 21 EEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4455556778999999999999987
No 197
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=66.21 E-value=8.9 Score=24.43 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhc
Q 010019 263 DELILEILSRQRNDSIQSLYDAIRVLL 289 (520)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 289 (520)
+|.++++++..+.+++.+|+.+|..++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 688999999877789999999998775
No 198
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.10 E-value=1.7e+02 Score=30.13 Aligned_cols=171 Identities=11% Similarity=0.051 Sum_probs=121.4
Q ss_pred HHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC---hhh---HHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019 305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN---DEI---CKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (520)
Q Consensus 305 a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~---~e~---~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a 378 (520)
+..+...+.+..|+..|... +-+..++++....++... ... +.-+.+ ..-+.+..++..+ +. +++.-.+
T Consensus 69 a~Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy-~~--~dial~~ 143 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGY-EN--PDIALNC 143 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGG-GS--TTTHHHH
T ss_pred HHHHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHh-cC--ccccchH
Confidence 34666778899999988865 456788888888887732 211 223333 2223444444543 33 3677788
Q ss_pred HHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCc---HHHHHHHHHhC
Q 010019 379 CSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS---GDLAIQAMLKF 455 (520)
Q Consensus 379 l~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~---i~~lv~~L~~~ 455 (520)
=..|+.....+.....|.....+..+.+.++ ..+-+|.-.|..++..|-.+++......+.... ......+| .
T Consensus 144 g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll--~ 219 (335)
T PF08569_consen 144 GDMLRECIKHESLAKIILYSECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL--E 219 (335)
T ss_dssp HHHHHHHTTSHHHHHHHHTSGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC--T
T ss_pred HHHHHHHHhhHHHHHHHhCcHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc--c
Confidence 8888888888888888888788888888887 678999999999999988889988888887664 34555555 4
Q ss_pred CCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019 456 PNAQQLQRSSCFMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 456 ~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~ 485 (520)
+++..+++++.-+|..+-. ++.+...|..
T Consensus 220 s~NYvtkrqslkLL~elll-dr~n~~vm~~ 248 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLL-DRSNFNVMTR 248 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHH-SGGGHHHHHH
T ss_pred CCCeEeehhhHHHHHHHHH-chhHHHHHHH
Confidence 4799999999999999953 5666555554
No 199
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=62.12 E-value=2.3e+02 Score=31.37 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=75.2
Q ss_pred CCHHHHHHHHhcCCCh-hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC---
Q 010019 312 GIARALVHSLHAGLSS-PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--- 387 (520)
Q Consensus 312 g~l~~Lv~lL~~~~~~-~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~--- 387 (520)
.++..+.+.++++.-+ .....+...+......+. ..+ ++.+.+++.......+..+...|+-++++|..
T Consensus 357 ~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt--~~~-----l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 357 PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT--EEI-----LKALFELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC--HHH-----HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 3577777777765422 122233333333322221 122 34556666543222234566777777777752
Q ss_pred -CCchH-HHHHhcCCHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHH-hCCCCHHHH
Q 010019 388 -SDSNK-SAIIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML-KFPNAQQLQ 462 (520)
Q Consensus 388 -~~~~k-~~Iv~~g~l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~-~~~~~~~vq 462 (520)
+.+.. ..+++ ..++.+.+.|... ..+...+.-.+.+|.|+... . .++.+...+. ..+....++
T Consensus 430 ~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--~---------~i~~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 430 VNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--S---------SIKVLEPYLEGAEPLSTFIR 497 (574)
T ss_pred cCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--h---------HHHHHHHhcCCCCCCCHHHH
Confidence 22211 22322 3566666665432 12333344566666666542 1 2333333343 333456788
Q ss_pred HHHHHHHHHHhhhChhhH
Q 010019 463 RSSCFMIRNLVARNPENR 480 (520)
Q Consensus 463 k~A~~aL~nL~~~~~e~~ 480 (520)
..|.||++.++...|+..
T Consensus 498 ~~Av~Alr~~a~~~p~~v 515 (574)
T smart00638 498 LAAILALRNLAKRDPRKV 515 (574)
T ss_pred HHHHHHHHHHHHhCchHH
Confidence 899999999975555443
No 200
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.90 E-value=25 Score=41.44 Aligned_cols=107 Identities=10% Similarity=0.180 Sum_probs=79.1
Q ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHH
Q 010019 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN 435 (520)
Q Consensus 356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~ 435 (520)
.|.+++.++.+....+++++.+|.-+|+.+.--. ..+.+ ..+|.|+.+|..+ ++|.|+-+++.+++-|+.+-|..
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fce-s~l~llftimeks-p~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCE-SHLPLLFTIMEKS-PSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHH-HHHHHHHHHHhcC-CCceeeecchheccchhhhcccc
Confidence 4566677766555566789999999998886321 23433 4689999999874 58999999999999999877654
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
... .-+.+.+-| |-.++.|++.|...|.+|..
T Consensus 996 ie~-----~T~~Ly~rL--~D~~~~vRkta~lvlshLIL 1027 (1251)
T KOG0414|consen 996 IEP-----WTEHLYRRL--RDESPSVRKTALLVLSHLIL 1027 (1251)
T ss_pred cch-----hhHHHHHHh--cCccHHHHHHHHHHHHHHHH
Confidence 332 345666666 44689999999999999964
No 201
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=60.89 E-value=1.4e+02 Score=27.52 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019 233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (520)
Q Consensus 233 ~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g 312 (520)
+.+...++.+++-+|..++..-+ ..++.+...|+..+..+.+.|..+|..|...|-.++ +..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-------------k~~ 63 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-------------KGQ 63 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-------------hhh
Confidence 55667788888888877654322 457888999998777888899999999988764443 112
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhccC
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAVN 343 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~ 343 (520)
.+..++.++.. +++++...|...+..+...
T Consensus 64 l~~~~l~~l~D-~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 64 LFSRILKLLVD-ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhHHHHHHHcC-CCHHHHHHHHHHHHHHHHh
Confidence 23666677754 4677888888888888743
No 202
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=60.85 E-value=2.3e+02 Score=30.07 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCC-----hHHHHHHHHHHHHhcCCC-CcchhhhhhchHH
Q 010019 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-----NDSIQSLYDAIRVLLTPD-DDQVVASQVYGYA 305 (520)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~aL~~Ls~~d-d~~v~~~~a~~~a 305 (520)
+..+...++++|.|+.-.+...++.+.+......+++.+.... ....-.=.+.|+-|+.-. +.| .
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~R---------s 180 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHR---------S 180 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHH---------H
Confidence 3467788899999998888888999998887777776665321 122222234444443321 222 3
Q ss_pred HHHHHcCCHHHHHHHHhcCC--Ch------------hHHHHHHHHHHHhccC
Q 010019 306 RRFAKIGIARALVHSLHAGL--SS------------PSLISASIALKAVAVN 343 (520)
Q Consensus 306 ~~i~~~g~l~~Lv~lL~~~~--~~------------~~~~~a~~aL~~La~~ 343 (520)
+.+++.+|++.+.+.|...- ++ +...+++.+++|++..
T Consensus 181 ql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 181 QLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred HHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 46668999999999997521 11 2335566777888753
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=60.66 E-value=3.8e+02 Score=32.48 Aligned_cols=276 Identities=8% Similarity=0.033 Sum_probs=130.8
Q ss_pred HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhc----CC
Q 010019 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT----GN 250 (520)
Q Consensus 175 ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~----~~ 250 (520)
++.|.+.++.- ...+....||.-|..+..-- ..+..-...+|.+|.++.. ...+++..|+.+|..+.. ..
T Consensus 424 vs~lts~IR~l--k~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 424 VSVLTSCIRAL--KTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLMD--SEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHHhh--hcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhhccCCC
Confidence 45555555543 23344455666666554211 1222333467888888863 467888888887776543 22
Q ss_pred hhhHHHHHhcCCHHHHHHHHhcCChHHHHH------------HH------HHHHHhcCCCCcch---hhhhhchHHHHHH
Q 010019 251 EVVKESYMELKIDELILEILSRQRNDSIQS------------LY------DAIRVLLTPDDDQV---VASQVYGYARRFA 309 (520)
Q Consensus 251 e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~------------a~------~aL~~Ls~~dd~~v---~~~~a~~~a~~i~ 309 (520)
..+-..| ..=..|.|-.++...+...++- |. ..++.-...+++.- +-..-.....++.
T Consensus 498 ~~daniF-~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 498 PSDANIF-PEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred cccchhh-HhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 2222233 3345666666666532222221 11 11221111111110 0000111122332
Q ss_pred HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC
Q 010019 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD 389 (520)
Q Consensus 310 ~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~ 389 (520)
+ .++..+.-|-..+++-++......|.-|+ .-+.+.+.=+.|+..|-.+..+.+..+..+-..-|.-++..-
T Consensus 577 ~--~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 577 H--TVEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred H--HHHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 2 23333333333333445555555555554 344444443444444433322223344433343444333221
Q ss_pred chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010019 390 SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMI 469 (520)
Q Consensus 390 ~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL 469 (520)
. ..-++.+-+|.|.+.|. ...+.|...|+.+|..|+...-=.+..+. ..++.+.=+| -||+ .=+.+.+|..|
T Consensus 649 G--~rs~seyllPLl~Q~lt--D~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL-~hPN-~WIR~~~~~iI 720 (1431)
T KOG1240|consen 649 G--WRSVSEYLLPLLQQGLT--DGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLL-CHPN-LWIRRAVLGII 720 (1431)
T ss_pred e--eeeHHHHHHHHHHHhcc--CcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhhe-eCch-HHHHHHHHHHH
Confidence 1 11235567899999997 66789999999999999852110111111 1122222222 3765 45778888877
Q ss_pred HHHh
Q 010019 470 RNLV 473 (520)
Q Consensus 470 ~nL~ 473 (520)
...+
T Consensus 721 ~~~~ 724 (1431)
T KOG1240|consen 721 AAIA 724 (1431)
T ss_pred HHHH
Confidence 7663
No 204
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=59.58 E-value=1.5e+02 Score=32.14 Aligned_cols=136 Identities=9% Similarity=0.052 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHH-HhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc----C--CHHHH-HHHHhcC
Q 010019 372 KTVARICCSLLSKLAGSDSNKSAI-IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL----R--SPENA-ARAMEAG 443 (520)
Q Consensus 372 ~~v~~~al~aL~~La~~~~~k~~I-v~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~----~--~~~~~-~~i~~~G 443 (520)
.-+..+|.+++..+..++..+... .-..+...+...|. ++.-.+++.+.|++.||+. + +++.. ..+...
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~--d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~- 481 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLE--DKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL- 481 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhh--hHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-
Confidence 345556677777777777666542 33456666777675 4456788999999999974 2 22222 222111
Q ss_pred cHHHHHH-HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcch---------HHHHHHHHHHc
Q 010019 444 SGDLAIQ-AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEIC---------KDAATDALRDL 513 (520)
Q Consensus 444 ~i~~lv~-~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~---------~~~a~aALr~L 513 (520)
.+..+++ +.+...++.+|.-+|..+|.|+. ...+.+.+.|...++...+..--+| +=.|.-|+.||
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnll----Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLL----QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH----HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 1222222 22333456778889999999983 3344455556666666665544322 22366666666
Q ss_pred C
Q 010019 514 G 514 (520)
Q Consensus 514 g 514 (520)
-
T Consensus 558 f 558 (728)
T KOG4535|consen 558 F 558 (728)
T ss_pred h
Confidence 3
No 205
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=58.89 E-value=2.5e+02 Score=29.78 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hhh--------
Q 010019 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEI-------- 346 (520)
Q Consensus 276 ~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e~-------- 346 (520)
..++-..|....|....++.. ...+..|+++|.+ +++-..++.++.-|..+ ++.
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~--------------~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLA--------------TELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchH--------------HHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 444446677777665443321 1235667777754 44556677777777655 332
Q ss_pred -----HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccCCCHHHHHH
Q 010019 347 -----CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDASVLQE 420 (520)
Q Consensus 347 -----~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~~~~~v~~~ 420 (520)
+|++.. -.+|.|++-.+... .+.....+.+|..+-.+-.....+-+. ..+|.|++.|. .+++.++..
T Consensus 312 vklLykQR~F~-~~~p~L~~~~~~~~----~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~--~~~~~v~~s 384 (415)
T PF12460_consen 312 VKLLYKQRFFT-QVLPKLLEGFKEAD----DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLS--LPDADVLLS 384 (415)
T ss_pred hhhHHhHHHHH-HHHHHHHHHHhhcC----hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 333332 22455555555432 246677788888887553322222222 35799999997 778899999
Q ss_pred HHHHHHHHhcCCHHH
Q 010019 421 VMSIITVLSLRSPEN 435 (520)
Q Consensus 421 a~~aL~nLa~~~~~~ 435 (520)
++.+|..+...+++.
T Consensus 385 ~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 385 SLETLKMILEEAPEL 399 (415)
T ss_pred HHHHHHHHHHcCHHH
Confidence 999999998765443
No 206
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=58.75 E-value=1.8e+02 Score=28.27 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCChhhHHHHHhcCcHHH-HHH-H------Hhhcc--cCcHHHHHHHHHHHHHhhcccccchhHHhcCC
Q 010019 149 LFDKLIELCGGNEGSVNAAVATKNGGVEL-VCS-I------CYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGG 218 (520)
Q Consensus 149 al~~L~~l~~~~~~~~~r~~i~~~Gaip~-Lv~-l------L~~~~--~~~~~~~~~al~~La~l~~~~~~~~~i~~~gg 218 (520)
++.+|.+--+. .+.-...+-...+++. |++ + |+... .......+.||..|..+...-+.+..|+++..
T Consensus 65 aL~EL~rkreq--~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ahi 142 (315)
T COG5209 65 ALDELFRKREQ--SPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAHI 142 (315)
T ss_pred HHHHHHHHHhc--CCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeeccc
Confidence 77777665554 4554444555555553 222 2 22211 12234477888888887766555666777765
Q ss_pred cHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChh-hHHHHHhcCCHHHHHHHHhcCCh
Q 010019 219 PKLLVNILIDG---NEDPEILNSGFAVVAASATGNEV-VKESYMELKIDELILEILSRQRN 275 (520)
Q Consensus 219 i~~Lv~lL~~~---~~~~~v~~~a~~~L~~~~~~~e~-nr~~i~~~g~i~~Lv~lL~~~~~ 275 (520)
.-.+-.+|... +...-+...++.+++.+...+.. .-..+....++|.+++++..+++
T Consensus 143 plflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSE 203 (315)
T COG5209 143 PLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSE 203 (315)
T ss_pred ceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhH
Confidence 54555555433 23334555677888877654332 23344466899999999988654
No 207
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=57.26 E-value=1.8e+02 Score=30.37 Aligned_cols=104 Identities=9% Similarity=0.073 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHhhCCCchHHHHHhcCC---HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHH
Q 010019 371 NKTVARICCSLLSKLAGSDSNKSAIIENGG---MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDL 447 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~---l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~ 447 (520)
+..+..+|+.+|+.+-.+++....+-+.-+ +...+..+.....+..+....+|+|+.=-.+ ..++...-+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHH
Confidence 458999999999999887766666543322 4555666654445678888888888753332 11333333333
Q ss_pred HHH---HHHhCCCCHHHHHHHHHHHHHHhhhChhh
Q 010019 448 AIQ---AMLKFPNAQQLQRSSCFMIRNLVARNPEN 479 (520)
Q Consensus 448 lv~---~L~~~~~~~~vqk~A~~aL~nL~~~~~e~ 479 (520)
++. .+..+-....+..++..+++++....|+.
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~ 168 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ 168 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 333 34443345667788888889887766655
No 208
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=57.25 E-value=2.2e+02 Score=28.64 Aligned_cols=171 Identities=14% Similarity=0.132 Sum_probs=92.5
Q ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH
Q 010019 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (520)
Q Consensus 230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~ 309 (520)
+.++.+.+.|+++++-+|.-+...-. ..++.+...+.....++...|+.+|+-+..--.... +...........
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~-~~~~~~~~~~~~ 111 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI-FDSESDNDESVD 111 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh-ccchhccCccch
Confidence 45679999999999999876543222 235677888866555666678888887654321111 000000000011
Q ss_pred HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHH-HHHhhCC
Q 010019 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSL-LSKLAGS 388 (520)
Q Consensus 310 ~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~a-L~~La~~ 388 (520)
....+..+.+.|.+. +++++.-++-.+..|....-... ....+..|+-+.=+.....+. -.+++++. +-..+.+
T Consensus 112 ~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~-~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 112 SKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQ-RLRQCLSVFFPVYASS 186 (298)
T ss_pred HhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcH-HHHHHHHHHHHHHHcC
Confidence 224567777777765 56788888888888764432221 012223333222111111223 34555554 4445644
Q ss_pred -CchHHHHHhcCCHHHHHHHHhccC
Q 010019 389 -DSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 389 -~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
++++. .+....+|.+-.+.+.+.
T Consensus 187 ~~~~Q~-~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 187 SPENQE-RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred CHHHHH-HHHHHHHHHHHHHHhCcc
Confidence 44544 444567888888777544
No 209
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.46 E-value=4.8e+02 Score=32.10 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhH-HHHHhcC
Q 010019 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC-KSVAENG 354 (520)
Q Consensus 276 ~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~-~~i~~~G 354 (520)
.+++-+...|+-++.|--...|++. | .+.|+.++..-+..+|-.+--.|.+.+|.++..=.++ +..-+.+
T Consensus 901 ~ivrlgf~~lrlIssDfLqSLp~sc-------i--~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~ 971 (1610)
T KOG1848|consen 901 KIVRLGFSCLRLISSDFLQSLPTSC-------I--LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDS 971 (1610)
T ss_pred hHHHhhhhhhhhhhhcchhcCChHH-------H--HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhh
Confidence 6667777778877765444444332 1 2456666666665556556567778888876322221 1122222
Q ss_pred ChHHHHHHHhccCCCCcHHHHHHHHH--HHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCC
Q 010019 355 GIDALLRCIDDSGLQGNKTVARICCS--LLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSD 413 (520)
Q Consensus 355 gv~~Ll~lL~~~~~~~~~~v~~~al~--aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~ 413 (520)
.-...++-+.... ....+..++++ ++.+|+. .++.|.++ +.|++..+.+.+..|+.
T Consensus 972 ~~~~~~e~~~ss~--~~~~~l~e~lwi~ll~~L~~~~~dsr~eV-RngAvqtlfri~~Shg~ 1030 (1610)
T KOG1848|consen 972 CAYNSVEDLYSSM--KSKEILPEVLWIMLLVHLADLCEDSRAEV-RNGAVQTLFRIFNSHGS 1030 (1610)
T ss_pred hhhcchhhhcccc--cchhhhhhHHHHHHHHHHHHHhccchHHH-hhhHHHHHHHHHhhhcc
Confidence 2122233333221 12355666655 3455663 34445555 55999999999997764
No 210
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.52 E-value=5.3e+02 Score=32.05 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=82.5
Q ss_pred HhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC--CCHH
Q 010019 339 AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS--DDAS 416 (520)
Q Consensus 339 ~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~--~~~~ 416 (520)
+++...|.|...-+.|=-+.+.+.|.-...+.-..-..-|..-++.|+..- ++.+- --++.|+-=|-||. .++.
T Consensus 938 ~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a--~~kl~--p~l~kLIPrLyRY~yDP~~~ 1013 (1702)
T KOG0915|consen 938 KISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA--GEKLE--PYLKKLIPRLYRYQYDPDKK 1013 (1702)
T ss_pred cchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH--HHhhh--hHHHHhhHHHhhhccCCcHH
Confidence 555556666666666666666666642111000111223444444454321 11111 12334444444443 4455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh-hhHHHHHhCCHHHHHHHH
Q 010019 417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP-ENRKLLLSNGVEKLIRQA 495 (520)
Q Consensus 417 v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~-e~~~~l~~~G~~~lL~~~ 495 (520)
| ..++.-+|+.-..++.+...-.-..+...|+-.|. +....|.+.+|.||+.|-.+.| +.....+- ..-..+.+.
T Consensus 1014 V-q~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt--~kewRVReasclAL~dLl~g~~~~~~~e~lp-elw~~~fRv 1089 (1702)
T KOG0915|consen 1014 V-QDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT--SKEWRVREASCLALADLLQGRPFDQVKEKLP-ELWEAAFRV 1089 (1702)
T ss_pred H-HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHHH
Confidence 5 55777788766556554433333345555555553 3578899999999999965422 22211111 222223333
Q ss_pred HHh-CcchHHHHHHHHHHcC
Q 010019 496 KEN-HEICKDAATDALRDLG 514 (520)
Q Consensus 496 ~~~-h~~~~~~a~aALr~Lg 514 (520)
|.. |.+.+.+|-.|.+-|+
T Consensus 1090 mDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1090 MDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 433 3355555655555543
No 211
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.04 E-value=17 Score=30.93 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHH
Q 010019 375 ARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417 (520)
Q Consensus 375 ~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v 417 (520)
+...+..|..||..|+.-..+++.|+++.|+.+|. +++.+|
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~--HeN~DI 103 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLS--HENTDI 103 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHC--CCCcce
Confidence 36778888999999999999999999999999996 556555
No 212
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.70 E-value=15 Score=37.79 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC
Q 010019 420 EVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN 486 (520)
Q Consensus 420 ~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~ 486 (520)
+....|++||..++++...+.+-||+++++.--.-...+|-+.+....++|+|...|.++++.+-..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 3667899999999999999999999998875433334578888899999999988888888776644
No 213
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.40 E-value=20 Score=36.89 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=53.8
Q ss_pred HHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019 377 ICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441 (520)
Q Consensus 377 ~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~ 441 (520)
+..+.|++|+ .++++.+.|.+.||++.++.--.-...+|-+++...-++.+|..++.+|++-+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 3567888887 6899999999999999988754433458999999999999999988888877754
No 214
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=50.22 E-value=7.5 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=18.6
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhhc
Q 010019 74 KENMEDLGMEPTEALQDAIQTLSLQ 98 (520)
Q Consensus 74 ~eni~~~~m~p~eal~~aI~qf~~q 98 (520)
++.+..-++.||.+||++|++|..+
T Consensus 46 ~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 46 RQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp -SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred CCcCCcccceECHHHHHHHHHHHHH
Confidence 4566677899999999999999554
No 215
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=49.54 E-value=2.3e+02 Score=27.92 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=25.5
Q ss_pred HhcCCHHHHHHHHhccCCC-------HHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019 396 IENGGMDKLIVVSARFSDD-------ASVLQEVMSIITVLSLRSPENAARAME 441 (520)
Q Consensus 396 v~~g~l~~Lv~lL~~~~~~-------~~v~~~a~~aL~nLa~~~~~~~~~i~~ 441 (520)
.+..+.|+|+++++.. ++ ..+-+..-.+|+.++.++.+..+.+++
T Consensus 70 re~~A~~~li~l~~~~-~~~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~ 121 (249)
T PF06685_consen 70 REERALPPLIRLFSQD-DDFLEDLFGDFITEDLPRILASVGDGDIEPLKELIE 121 (249)
T ss_pred hhhhhHHHHHHHHcCC-cchHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHh
Confidence 3456788888888632 21 124455556666666655555444443
No 216
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.23 E-value=1.7e+02 Score=33.16 Aligned_cols=127 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh-cCCHH
Q 010019 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS-LRSPE 434 (520)
Q Consensus 356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa-~~~~~ 434 (520)
|..++..+-.+.+..+..|.-.+|..|+.|..+......-+-.+-.+.+..=+. ...|.|+.+|+-+|+.+= ....+
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~--Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK--DREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHHHHhcCCCCC
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC--CHHHHHHHH
Q 010019 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN--GVEKLIRQA 495 (520)
Q Consensus 435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~--G~~~lL~~~ 495 (520)
.+... ..++.+++..| +++|.+.| +.|+ +.++.....+++. .+-...|++
T Consensus 161 e~~v~------n~l~~liqnDp-S~EVRRaa---LsnI-~vdnsTlp~IveRarDV~~anRrl 212 (892)
T KOG2025|consen 161 ECPVV------NLLKDLIQNDP-SDEVRRAA---LSNI-SVDNSTLPCIVERARDVSGANRRL 212 (892)
T ss_pred cccHH------HHHHHHHhcCC-cHHHHHHH---HHhh-ccCcccchhHHHHhhhhhHHHHHH
No 217
>PHA00617 ribbon-helix-helix domain containing protein
Probab=47.90 E-value=27 Score=28.03 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=18.7
Q ss_pred HHHHHhhcCCChhHHHHHHHHHH
Q 010019 73 VKENMEDLGMEPTEALQDAIQTL 95 (520)
Q Consensus 73 V~eni~~~~m~p~eal~~aI~qf 95 (520)
+.+-....+++..+.+++||++|
T Consensus 54 LD~LA~~~GrsRSelIreAI~~Y 76 (80)
T PHA00617 54 LEQVAIKMKKSKSEIIREALEKY 76 (80)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHH
Confidence 44445578999999999999997
No 218
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=47.15 E-value=4.7e+02 Score=29.54 Aligned_cols=146 Identities=10% Similarity=0.058 Sum_probs=76.5
Q ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHH---hcCCChhHHHHHHHHHH
Q 010019 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL---HAGLSSPSLISASIALK 338 (520)
Q Consensus 262 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL---~~~~~~~~~~~a~~aL~ 338 (520)
.+..++..++ .....+..+++.|.|+-.+.-.+ .++... ++.+...+ +..++..++...+....
T Consensus 590 ~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~-----------~~~~s~-~~~i~~~~~~~~s~~~knl~ia~atlal 656 (745)
T KOG0301|consen 590 LVGTLIPILN-ADPANQLLVVRCLANLFSNPAGR-----------ELFMSR-LESILDPVIEASSLSNKNLQIALATLAL 656 (745)
T ss_pred HHHhhhcccc-cchhHHHHHHHHHHHhccCHHHH-----------HHHHHH-HHHHhhhhhhhhcccchhHHHHHHHHHH
Confidence 3444444444 22244555888888887653211 222111 22222222 22333445444444334
Q ss_pred HhccChhhHHHHHhcCChHHHHHHHhccCCCC-cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHH
Q 010019 339 AVAVNDEICKSVAENGGIDALLRCIDDSGLQG-NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417 (520)
Q Consensus 339 ~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~-~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v 417 (520)
|++.- ..+.-.+.|+.+.+..++....+.. +-+..-..+-+|++|+..+....++.+.-.++.++.-++.....+.
T Consensus 657 n~sv~--l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~- 733 (745)
T KOG0301|consen 657 NYSVL--LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPS- 733 (745)
T ss_pred HHHHH--HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCch-
Confidence 44321 1122234788888888887543321 1133345677788888888888888777788888888875543333
Q ss_pred HHHHHH
Q 010019 418 LQEVMS 423 (520)
Q Consensus 418 ~~~a~~ 423 (520)
.++.+.
T Consensus 734 ~k~~a~ 739 (745)
T KOG0301|consen 734 GKNIAR 739 (745)
T ss_pred hhHHHH
Confidence 344433
No 219
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.51 E-value=1.1e+02 Score=26.97 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 370 GNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
+++.++..|+.+|-.+..| +.....|.+.+.+..|+.++......+.|++.++..+..-+.
T Consensus 49 ~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 49 KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4568888999999888865 445667888888999999998665555688888888876653
No 220
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.32 E-value=1.1e+02 Score=30.99 Aligned_cols=37 Identities=5% Similarity=0.157 Sum_probs=23.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL 482 (520)
Q Consensus 444 ~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~ 482 (520)
.+..+++-+++ -+..|-+.||+++..+.+........
T Consensus 130 vii~vvkslKN--lRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 130 VIIAVVKSLKN--LRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666654 46778889999998887643443333
No 221
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=46.10 E-value=61 Score=31.74 Aligned_cols=81 Identities=10% Similarity=0.041 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCH-------HHHHHHHhcCChHHH-HHHHHHHHHhcCCCCcchhhhhhchHH
Q 010019 234 EILNSGFAVVAASATGNEVVKESYMELKID-------ELILEILSRQRNDSI-QSLYDAIRVLLTPDDDQVVASQVYGYA 305 (520)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i-------~~Lv~lL~~~~~~~~-~~a~~aL~~Ls~~dd~~v~~~~a~~~a 305 (520)
.-|..++.++..+|. .|.|-+.|...+-. ..|+++|....+.+. +.|.-.|.+|+..+.. -+
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~---------~~ 208 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEA---------AA 208 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHH---------HH
Confidence 456789999999876 56788877766543 344555554444444 4599999999987742 35
Q ss_pred HHHH-HcCCHHHHHHHHhcC
Q 010019 306 RRFA-KIGIARALVHSLHAG 324 (520)
Q Consensus 306 ~~i~-~~g~l~~Lv~lL~~~ 324 (520)
+.++ +.+.|..|+..+...
T Consensus 209 r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 209 RAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred HHHHHhhchHHHHHHHHHHH
Confidence 6777 678999999988753
No 222
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=45.99 E-value=73 Score=30.14 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=46.5
Q ss_pred HHHhcCCHHHHHHHHhccCCC----------------HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh-CC
Q 010019 394 AIIENGGMDKLIVVSARFSDD----------------ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK-FP 456 (520)
Q Consensus 394 ~Iv~~g~l~~Lv~lL~~~~~~----------------~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~-~~ 456 (520)
.+.+.|++..++++|+...+. ..+...++..|..+|.++++|...+.+. ++.+...+.. +.
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQI 115 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhc
Confidence 456778888888888653322 4788999999999999999999988653 3322333322 11
Q ss_pred CCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHH
Q 010019 457 NAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQ 494 (520)
Q Consensus 457 ~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~ 494 (520)
... -.+.-++..+...|++....+.+.-+..++..
T Consensus 116 ~~~---~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~l 150 (207)
T PF01365_consen 116 GYG---LGALDVLTEIFRDNPELCESISEEHIEKFIEL 150 (207)
T ss_dssp -TT---HHHHHHHHHHHTT-------------------
T ss_pred cCC---chHHHHHHHHHHCcHHHHHHhhHHHHHHHHHH
Confidence 111 13445566666778888888777665555543
No 223
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=44.63 E-value=1.6e+02 Score=34.25 Aligned_cols=149 Identities=12% Similarity=0.062 Sum_probs=74.7
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-H-cCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010019 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-IGIARALVHSLHAGLSSPSLISASIALK 338 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~-~g~l~~Lv~lL~~~~~~~~~~~a~~aL~ 338 (520)
.++|.|++...+......-+-..+|.++-.+ -++. .+. + ...+|.|++.|.- +|..++..+..+|.
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~-vP~~----------vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTN-VPKQ----------VLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIP 934 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhc-CCHH----------hhccchhhHHHHHHHhcCC-CccchhhhHhhhhh
Confidence 4677777777643222223333444444331 1111 222 1 2467888888864 57777677777776
Q ss_pred HhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHH
Q 010019 339 AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASV 417 (520)
Q Consensus 339 ~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v 417 (520)
-+..-.+.-..---.-.||.++.+=+++ +.....|...|+.+|..|.. -|...-.-.+-.++..|...|. ....-|
T Consensus 935 ~~l~~~~tL~t~~~~Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld--DkKRlV 1011 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLSTLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD--DKKRLV 1011 (1030)
T ss_pred HHHHhccccchHHHhHHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC--cHHHHH
Confidence 5543222111111111234444432322 21014677889999999986 4544333333344555666664 333456
Q ss_pred HHHHHHH
Q 010019 418 LQEVMSI 424 (520)
Q Consensus 418 ~~~a~~a 424 (520)
+++|..+
T Consensus 1012 R~eAv~t 1018 (1030)
T KOG1967|consen 1012 RKEAVDT 1018 (1030)
T ss_pred HHHHHHH
Confidence 6666543
No 224
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=43.63 E-value=2.2e+02 Score=24.83 Aligned_cols=75 Identities=8% Similarity=-0.055 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L 200 (520)
..+++.|+..+.+ +++..+..||.-|..+.+. -+..+...+.....+.-|+.++...+..+..+...++..+
T Consensus 36 k~a~raL~krl~~-------~n~~vql~AL~lLd~~vkN-cg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll 107 (133)
T cd03561 36 KEAARAIRKKIKY-------GNPHVQLLALTLLELLVKN-CGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELI 107 (133)
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHh-CChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 4678899998887 7888888888888776664 2455667777767777788888753224667776666666
Q ss_pred HHh
Q 010019 201 ALL 203 (520)
Q Consensus 201 a~l 203 (520)
..-
T Consensus 108 ~~W 110 (133)
T cd03561 108 LAW 110 (133)
T ss_pred HHH
Confidence 554
No 225
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=43.44 E-value=4.2e+02 Score=27.97 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-Cch-------------H
Q 010019 328 PSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSN-------------K 392 (520)
Q Consensus 328 ~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~-------------k 392 (520)
....-..|....|.. ++.....+ +..|+++|.+ +++-..+...+.-|.+. ++. |
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~-----~~~L~~lL~~------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLyk 317 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATEL-----LDKLLELLSS------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYK 317 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHH-----HHHHHHHhCC------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHh
Confidence 344556677777763 33222222 3467777765 25677788888888765 433 2
Q ss_pred HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
+.+.. -.+|.|++..+. .+...+.+.+-+|++|...-|...-.---...+|.+++.|.. .+..++..+...|..+
T Consensus 318 QR~F~-~~~p~L~~~~~~--~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~--~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 318 QRFFT-QVLPKLLEGFKE--ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL--PDADVLLSSLETLKMI 392 (415)
T ss_pred HHHHH-HHHHHHHHHHhh--cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 33333 357777777763 344478888999999987666443222113468999999943 6778888888888888
Q ss_pred hhhChhh
Q 010019 473 VARNPEN 479 (520)
Q Consensus 473 ~~~~~e~ 479 (520)
...+++.
T Consensus 393 l~~~~~~ 399 (415)
T PF12460_consen 393 LEEAPEL 399 (415)
T ss_pred HHcCHHH
Confidence 6555444
No 226
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=40.56 E-value=3.8e+02 Score=26.57 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=68.0
Q ss_pred HHHHHhcCcHH-HHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHH
Q 010019 166 AAVATKNGGVE-LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (520)
Q Consensus 166 r~~i~~~Gaip-~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (520)
|..+++.+.++ -|+.+|.+.. ++..+...+++.|..++-- ... + ....+.+......-.....
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~-~~~~l~~~~l~LLV~LT~P-----~~~-------~---~~~~~~~~~~~~~~~~l~~ 96 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYK-DDDKLFLACLRLLVNLTWP-----IEL-------L---VESQPKDKNQRRNIPELLK 96 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhcc-CchHHHHHHHHHHHHhCCC-----HHH-------h---ccCCCCChHHHHHHHHHHH
Confidence 44444444444 3444444432 3678888899999988731 111 0 0000011111111111111
Q ss_pred HHhcCChhhHHHHHhcCCHHHHHHHHhc----C----Ch---HHHHHHHHHHHHhcCCCCcchhhhh------hch-HHH
Q 010019 245 ASATGNEVVKESYMELKIDELILEILSR----Q----RN---DSIQSLYDAIRVLLTPDDDQVVASQ------VYG-YAR 306 (520)
Q Consensus 245 ~~~~~~e~nr~~i~~~g~i~~Lv~lL~~----~----~~---~~~~~a~~aL~~Ls~~dd~~v~~~~------a~~-~a~ 306 (520)
.+ -..|..|.+.+++..++.++.. . ++ ..++...-.++|+..-.++...... .++ --.
T Consensus 97 ~l----~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~ 172 (266)
T PF04821_consen 97 YL----QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIW 172 (266)
T ss_pred HH----HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHH
Confidence 11 2357777777777777766632 1 11 6667788899999877554322111 011 123
Q ss_pred HHHHcCCHHHHHHHHhc
Q 010019 307 RFAKIGIARALVHSLHA 323 (520)
Q Consensus 307 ~i~~~g~l~~Lv~lL~~ 323 (520)
.+.+.|....|+.+.++
T Consensus 173 ~l~~~~v~~lLL~l~s~ 189 (266)
T PF04821_consen 173 ALFESGVLDLLLTLASS 189 (266)
T ss_pred HHHHcCHHHHHHHHHhC
Confidence 33455666666666654
No 227
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=39.37 E-value=5.8e+02 Score=28.44 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
-+..+|+.+|...+-+-+.+ +........|-+.|+ ..+.+|+..|.-+|.+|-.
T Consensus 502 ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRcln--D~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 502 IVRSAAVQALSKFALNISDV--VSPQSVENALKRCLN--DQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhh--cccHHHHHHHHHHHHhhhh
Confidence 57778888888777443211 111112234455665 5678999999999998764
No 228
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.98 E-value=3.4e+02 Score=30.26 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=62.3
Q ss_pred cCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh--cCCHHHHHHHHhcC
Q 010019 366 SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS--LRSPENAARAMEAG 443 (520)
Q Consensus 366 ~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa--~~~~~~~~~i~~~G 443 (520)
+.+..+..|...+|..|+.++.+-.--+..+-.|-++.|.+-+- ...+.|+.+|+-+|+-+- ..+++|..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~--DRE~~VR~eAv~~L~~~Qe~~~neen~~------ 170 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF--DREKAVRREAVKVLCYYQEMELNEENRI------ 170 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhccCChHHHH------
Confidence 34555678999999999998855322223333354555554332 446889999999998764 23555432
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL 484 (520)
Q Consensus 444 ~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~ 484 (520)
...++..++..|+ .+|.+.| +.|+. .++.....++
T Consensus 171 -~n~l~~~vqnDPS-~EVRr~a---llni~-vdnsT~p~Il 205 (885)
T COG5218 171 -VNLLKDIVQNDPS-DEVRRLA---LLNIS-VDNSTYPCIL 205 (885)
T ss_pred -HHHHHHHHhcCcH-HHHHHHH---HHHee-eCCCcchhHH
Confidence 3456666776654 4666554 55652 3333344444
No 229
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=38.20 E-value=2.3e+02 Score=24.78 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhc
Q 010019 370 GNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARF-SDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~ 430 (520)
+++.++..|+.+|-.+..| +.....|.....+..|+.++... ..++.|++.++..|.+.+.
T Consensus 49 ~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 49 GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4568888999999988854 33566777767888899988754 4578899999888887764
No 230
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.54 E-value=1.9e+02 Score=32.86 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=43.1
Q ss_pred CCHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010019 261 KIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA 339 (520)
Q Consensus 261 g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~ 339 (520)
++|..|+.+--+. ++++.+.|.-+|.-.+..|-. .+|..|++|..+.++.+.--++.||+-
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------------------~~~s~V~lLses~N~HVRyGaA~ALGI 615 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------------------QLPSTVSLLSESYNPHVRYGAAMALGI 615 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChh------------------hchHHHHHHhhhcChhhhhhHHHHHhh
Confidence 4556666653333 458888888888877765521 357777888776677777777777765
Q ss_pred hccC
Q 010019 340 VAVN 343 (520)
Q Consensus 340 La~~ 343 (520)
-+..
T Consensus 616 aCAG 619 (929)
T KOG2062|consen 616 ACAG 619 (929)
T ss_pred hhcC
Confidence 5543
No 231
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=37.52 E-value=3.2e+02 Score=24.85 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=50.7
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCC--HHHHHHHHhccCCCHHHHHHHHHHHHHHhc---C
Q 010019 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG--MDKLIVVSARFSDDASVLQEVMSIITVLSL---R 431 (520)
Q Consensus 357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~--l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~---~ 431 (520)
..+..+|.+.. +.-...++.++..+..... .+.+.+.|+ +..++..|++ .+.+.+.+.+|.+|..|.. +
T Consensus 28 ~ri~~LL~s~~----~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 28 TRINSLLQSKS----AYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHhCCCC----hhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 34666776532 3556778877777664321 344445443 7888999986 4567889999999888763 4
Q ss_pred CHHHHHHHHh
Q 010019 432 SPENAARAME 441 (520)
Q Consensus 432 ~~~~~~~i~~ 441 (520)
-|+..+++..
T Consensus 102 ~p~l~Rei~t 111 (165)
T PF08167_consen 102 KPTLTREIAT 111 (165)
T ss_pred CCchHHHHhh
Confidence 5555555543
No 232
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=37.38 E-value=12 Score=37.29 Aligned_cols=11 Identities=55% Similarity=1.117 Sum_probs=7.2
Q ss_pred CCchhhhhccC
Q 010019 3 TVPKSYYKHFS 13 (520)
Q Consensus 3 ~~~~~~~~~~~ 13 (520)
||||+||+||-
T Consensus 62 ~VPK~wF~HFY 72 (304)
T KOG1640|consen 62 TVPKRWFSHFY 72 (304)
T ss_pred cCcHHHHHHHH
Confidence 56777777763
No 233
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=35.97 E-value=3.4e+02 Score=31.78 Aligned_cols=180 Identities=14% Similarity=0.138 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcc-hhhhhhch---HHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010019 263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ-VVASQVYG---YARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (520)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~-v~~~~a~~---~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~ 338 (520)
...++++|+.. ++-..+..++.-+..|+..- ...|.+.. +.+.+. ...+|.|++.....+ ...+..-..+|+
T Consensus 817 a~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~-~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 817 AEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAP-GSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCC-ccchhHHHHHHH
Confidence 44566666653 33344566666555554321 11111211 112222 257899998887432 345566667777
Q ss_pred HhccChhhHHHHHhc--CChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCC-
Q 010019 339 AVAVNDEICKSVAEN--GGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDD- 414 (520)
Q Consensus 339 ~La~~~e~~~~i~~~--Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~- 414 (520)
++..+- -++.+... .-.|.|++.|+- ++..++-..+.+|.-+- .++.....=++ -.+|.++.+=..+..+
T Consensus 893 hVl~~v-P~~vllp~~~~LlPLLLq~Ls~----~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~ 966 (1030)
T KOG1967|consen 893 HVLTNV-PKQVLLPQFPMLLPLLLQALSM----PDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNM 966 (1030)
T ss_pred HHHhcC-CHHhhccchhhHHHHHHHhcCC----CccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcch
Confidence 765421 12333321 124555665553 33467677777776654 23322222221 2456666655533332
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHH
Q 010019 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM 452 (520)
Q Consensus 415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L 452 (520)
..|++.|+.+|..|+.+-|...-.-..-.++..+...|
T Consensus 967 ~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L 1004 (1030)
T KOG1967|consen 967 MVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL 1004 (1030)
T ss_pred hHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc
Confidence 67899999999999976665443332222334444444
No 234
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=35.63 E-value=1.7e+02 Score=33.11 Aligned_cols=130 Identities=11% Similarity=0.123 Sum_probs=87.5
Q ss_pred CChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHH
Q 010019 325 LSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK 403 (520)
Q Consensus 325 ~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~ 403 (520)
+|+.++..|...|..|. ...++|..= .|.++..|..++. |.+..++.-.|+-++.+-.+ .++ .--+.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~eh-----lpllIt~mek~p~---P~IR~NaVvglgD~~vcfN~---~~d-e~t~y 975 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEH-----LPLLITSMEKHPI---PRIRANAVVGLGDFLVCFNT---TAD-EHTHY 975 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhCCC---cceeccceeeccccceehhh---hhH-HHHHH
Confidence 46788888888888765 677777543 5899999998754 47888888777777643211 111 11234
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 404 Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
|.+-|. ..+..|++.|..++..|-+.+ . +--.|-.+.+...|.. .++++...|-.....+++.
T Consensus 976 LyrrL~--De~~~V~rtclmti~fLilag---q--~KVKGqlg~ma~~L~d--eda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 976 LYRRLG--DEDADVRRTCLMTIHFLILAG---Q--LKVKGQLGKMALLLTD--EDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred HHHHhc--chhhHHHHHHHHHHHHHHHcc---c--eeeccchhhhHhhccC--CcchHHHHHHHHHHHHHhc
Confidence 555444 567899999999999988632 1 1123556666666644 5777877888888777654
No 235
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=35.48 E-value=2e+02 Score=25.64 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 370 GNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
.|+.++..|+.+|-.+..| +.....|.+.+.+..|+.++.. ..++.|++.++..+.+-+
T Consensus 53 ~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 53 KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWA 113 (142)
T ss_pred CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHH
Confidence 4568888999999888865 3456678888889999998875 457899999988887766
No 236
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=35.31 E-value=2.1e+02 Score=24.99 Aligned_cols=71 Identities=4% Similarity=-0.050 Sum_probs=52.4
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRS-PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 401 l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~-~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
+..|-.=|. +.+|.++-.|+..|-.+..+. +.....+...+.+..++.++..++..+.|++.+...+..-+
T Consensus 39 ~r~l~krl~--~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 39 VRLLKKRLN--NKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 344555565 578999999988888887653 44556777777888888888776666668888888887764
No 237
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=35.21 E-value=52 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=25.6
Q ss_pred HHHHHhhcCCChhHHHHHHHHHH-hhcCcccC
Q 010019 73 VKENMEDLGMEPTEALQDAIQTL-SLQGVDLS 103 (520)
Q Consensus 73 V~eni~~~~m~p~eal~~aI~qf-~~qgvdls 103 (520)
..+.+++++|++.+|++-.+.|+ ..+|+++.
T Consensus 17 a~~i~~~lGl~~s~ai~~fl~qvv~~~~lPF~ 48 (83)
T TIGR02384 17 AYAVFEELGLTPSTAIRMFLKQVIREQGLPFD 48 (83)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 34456889999999999999998 77887663
No 238
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=35.20 E-value=75 Score=27.43 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=34.2
Q ss_pred cceeccc-ccCCCCCcchhhhhhHHHHHHHHHHHHh-----------h-cCC-------ChhHHHHHHHHHHhhcCccc
Q 010019 44 FFVRTDL-TAHEMGPPKTVRTISQEAFDEVVKENME-----------D-LGM-------EPTEALQDAIQTLSLQGVDL 102 (520)
Q Consensus 44 ~~~~~~~-~~~~~~~~~~~~~isQetfDe~V~eni~-----------~-~~m-------~p~eal~~aI~qf~~qgvdl 102 (520)
|.||+|+ ++++||.++++-+....+.- +....-. + -+| +-++.+.+.-++.+..|++-
T Consensus 5 ivVR~DL~~~~~m~kGkiaAQ~aHAav~-a~~~~~~~~~~~~~~~~~~~~g~~KVVLkv~~e~eL~~L~~~a~~~gi~~ 82 (116)
T cd02429 5 VILRRDLQTKLSWPLGAVIAQACHAAVA-VIHLFRSDPDTKKYAYLSNLDNMHKVVLEVPDEAALKNLSSKLTENSIKH 82 (116)
T ss_pred EEEeccccccCCCCccHHHHHHHHHHHH-HHHHHhhCchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHcCCCe
Confidence 6799998 78999999866555544432 2211111 0 123 33456677766677777753
No 239
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=35.04 E-value=2.8e+02 Score=25.91 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=47.3
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS 388 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~ 388 (520)
.-..|+..|+...+..++...+.+|..|..+--+. + .+.|-++.++.-+.....+.|.++...++.+++.|.+.
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~-r-L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH-R-LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh-h-cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 45777888887666678888888888887432211 1 13455666665554332223347888999898888754
No 240
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=34.70 E-value=4.3e+02 Score=25.52 Aligned_cols=140 Identities=12% Similarity=0.069 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhccCh-hhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019 314 ARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (520)
Q Consensus 314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~-e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (520)
++.|+--+...+++..+...+.+|+.++.++ .+...++ ..|..+.... . .+...-+.+.+..+-...+ +
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~-----~~L~~L~~~~-~---~~~~~~~~rLl~~lw~~~~-r 71 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVL-----QTLVSLVEQG-S---LELRYVALRLLTLLWKAND-R 71 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHH-----HHHHHHHcCC-c---hhHHHHHHHHHHHHHHhCc-h
Confidence 4555555666667788888999999999766 4433333 2333333321 1 1232334444444432221 1
Q ss_pred HHHHhcCCHHHHHHH--Hh---c---cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019 393 SAIIENGGMDKLIVV--SA---R---FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~l--L~---~---~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~ 464 (520)
. . +.+..++.. ++ . ........-....++..+|...|++...+ +..+...+. +.+++.++..
T Consensus 72 ~-f---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~l-----l~~ls~~L~-~~~~~~~~al 141 (234)
T PF12530_consen 72 H-F---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDL-----LPLLSGCLN-QSCDEVAQAL 141 (234)
T ss_pred H-H---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHH-----HHHHHHHHh-ccccHHHHHH
Confidence 1 0 223333332 11 0 11122333333456777777666633222 345555553 3345556666
Q ss_pred HHHHHHHHh
Q 010019 465 SCFMIRNLV 473 (520)
Q Consensus 465 A~~aL~nL~ 473 (520)
|.-+|+.++
T Consensus 142 ale~l~~Lc 150 (234)
T PF12530_consen 142 ALEALAPLC 150 (234)
T ss_pred HHHHHHHHH
Confidence 666666665
No 241
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.84 E-value=5.7e+02 Score=28.62 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=70.0
Q ss_pred HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
..+++ |.+..+++-+. +.+..|+..+|..|+-++- ...-....+..|.++.+.+-+-. ..+.|.++|..+|+-+
T Consensus 86 ~~~V~-~~~~h~lRg~e--skdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~D--RE~~VR~eAv~~L~~~ 159 (885)
T COG5218 86 EELVA-GTFYHLLRGTE--SKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFD--REKAVRREAVKVLCYY 159 (885)
T ss_pred hHHHH-HHHHHHHhccc--CcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHH
Confidence 44443 44555555555 6788999999999998873 33334445556666666655533 5788999999999887
Q ss_pred h--hhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHHHcCCCC
Q 010019 473 V--ARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDD 517 (520)
Q Consensus 473 ~--~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~Lg~~~ 517 (520)
- ..+++++ +..++....++.| ...|-.+||-++..||
T Consensus 160 Qe~~~neen~-------~~n~l~~~vqnDP-S~EVRr~allni~vdn 198 (885)
T COG5218 160 QEMELNEENR-------IVNLLKDIVQNDP-SDEVRRLALLNISVDN 198 (885)
T ss_pred HhccCChHHH-------HHHHHHHHHhcCc-HHHHHHHHHHHeeeCC
Confidence 4 2355553 2234555555555 3445567777776665
No 242
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.83 E-value=5.1e+02 Score=29.70 Aligned_cols=85 Identities=19% Similarity=0.090 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHH
Q 010019 326 SSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKL 404 (520)
Q Consensus 326 ~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~L 404 (520)
+.++.+.|..+|+-++ .+++.| +..+++|+.+. |+-|.-.+.-+|+--+....++.+|- |
T Consensus 568 nDDVrRaAVialGFVl~~dp~~~---------~s~V~lLses~---N~HVRyGaA~ALGIaCAGtG~~eAi~-------l 628 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRDPEQL---------PSTVSLLSESY---NPHVRYGAAMALGIACAGTGLKEAIN-------L 628 (929)
T ss_pred chHHHHHHHHHheeeEecChhhc---------hHHHHHHhhhc---ChhhhhhHHHHHhhhhcCCCcHHHHH-------H
Confidence 4567777777777665 445544 44556776542 34577777777776665555565552 2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 405 IVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 405 v~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
++-|.. ....-|++.||-+++-+..
T Consensus 629 Lepl~~-D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 629 LEPLTS-DPVDFVRQGALIALAMIMI 653 (929)
T ss_pred Hhhhhc-ChHHHHHHHHHHHHHHHHH
Confidence 333321 2234577778888776654
No 243
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=33.72 E-value=2.3e+02 Score=25.31 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 370 GNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
.|+.++..|+.+|-.++.| +.....|.+...+..|+.++... .++.|++..+..|...+.
T Consensus 49 ~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 49 KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHH
Confidence 4568888899999988854 34566788888899999999753 678999998888877653
No 244
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=33.65 E-value=7.5e+02 Score=28.01 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=83.2
Q ss_pred CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHH---hcCCh-HHHHHHHHHHHHhcC--C
Q 010019 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL---SRQRN-DSIQSLYDAIRVLLT--P 291 (520)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL---~~~~~-~~~~~a~~aL~~Ls~--~ 291 (520)
|-..+-+++.....++..+..++++|.|+-. |..+++.++.. ...++..+ .+.++ .++.+.+....|++. .
T Consensus 587 ~~~~~~~li~~~~~~~an~ll~vR~L~N~f~-~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~ 663 (745)
T KOG0301|consen 587 GQNLVGTLIPILNADPANQLLVVRCLANLFS-NPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLI 663 (745)
T ss_pred hhHHHHhhhcccccchhHHHHHHHHHHHhcc-CHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 3444444444444567888899999999865 57788888754 33333222 22222 343332323333331 1
Q ss_pred CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC----hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC
Q 010019 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS----SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG 367 (520)
Q Consensus 292 dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~----~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~ 367 (520)
.+ -.+.++.+.|..++...-+ -+..-....||.+|+..+....++...=.|.-++.-++...
T Consensus 664 ~~--------------~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 664 QD--------------NEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred hc--------------ccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhc
Confidence 00 0124677777777765332 22333456688999988878888888878888888887654
Q ss_pred CCCcHHHHHHHHHH
Q 010019 368 LQGNKTVARICCSL 381 (520)
Q Consensus 368 ~~~~~~v~~~al~a 381 (520)
+. +..+..+..
T Consensus 730 ~~---~~~k~~a~~ 740 (745)
T KOG0301|consen 730 SN---PSGKNIARD 740 (745)
T ss_pred cC---chhhHHHHH
Confidence 33 344444443
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=33.59 E-value=3.4e+02 Score=24.08 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L 200 (520)
..+++.|+..+.+ +++..+..||.-|..+.+. =+......+...+.+..|+.+++.. .+..+...++..+
T Consensus 40 k~a~ral~krl~~-------~n~~vql~AL~LLe~~vkN-CG~~fh~evas~~fl~~l~~l~~~~--~~~~Vk~kil~li 109 (142)
T cd03569 40 KYAMRALKKRLLS-------KNPNVQLYALLLLESCVKN-CGTHFHDEVASREFMDELKDLIKTT--KNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHHHcC-------CChHHHHHHHHHHHHHHHH-CCHHHHHHHhhHHHHHHHHHHHccc--CCHHHHHHHHHHH
Confidence 4688999999887 7888888888777665552 1466677788888999999988752 3667776666666
Q ss_pred HHh
Q 010019 201 ALL 203 (520)
Q Consensus 201 a~l 203 (520)
-.-
T Consensus 110 ~~W 112 (142)
T cd03569 110 QAW 112 (142)
T ss_pred HHH
Confidence 543
No 246
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=33.39 E-value=7.7e+02 Score=28.06 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=48.4
Q ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 355 gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
.++.|...+.+ .+..+++.++..+-..+..-+ -..+..-.+|.|-.+ -.+..+..++-+++.++..+.
T Consensus 390 IlplL~~S~~~----~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 390 ILPLLYRSLED----SDVQIQELALQILPTVAESID--VPFVKQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHHHHHHhcC----cchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcc-hhcccchHHHHHHHHHHHHHH
Confidence 34566666654 235789999999988886543 334444567888777 344668899999999999888
No 247
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=33.38 E-value=3.3e+02 Score=24.71 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=73.1
Q ss_pred CHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019 262 IDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (520)
Q Consensus 262 ~i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L 340 (520)
.++.|+++|+... .++.+++.++|+.|-.-|-.+. |.+.. ..+.-. ....+... .+......+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~---------k~~~~--~~~~~~---~~~~~~~~-~~~~l~~~~~ 75 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKH---------KSIQK--SLDSKS---SENSNDES-TDISLPMMGI 75 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHH---------hcccc--cCCccc---cccccccc-hhhHHhhccC
Confidence 3566778888763 3888889888887776653322 11111 111000 00001111 1221111223
Q ss_pred c-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCCchHHHHHhcCCHHHHHHHHhccCCCHHH
Q 010019 341 A-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDASV 417 (520)
Q Consensus 341 a-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v 417 (520)
. ..+|....++ +..|++.|++.+-. .-...++.++-++- .+..+...+- ..+|.++..++ ..++..
T Consensus 76 ~~~~ee~y~~vv----i~~L~~iL~D~sLs---~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~--~~~~~~ 144 (160)
T PF11865_consen 76 SPSSEEYYPTVV----INALMRILRDPSLS---SHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIR--TCPDSL 144 (160)
T ss_pred CCchHHHHHHHH----HHHHHHHHHhhhhH---HHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHH--hCCHHH
Confidence 2 4566666554 67888888764321 22334444444443 2222222232 37899999998 345588
Q ss_pred HHHHHHHHHHHh
Q 010019 418 LQEVMSIITVLS 429 (520)
Q Consensus 418 ~~~a~~aL~nLa 429 (520)
+|....-|+.|.
T Consensus 145 ~e~~~~qL~~lv 156 (160)
T PF11865_consen 145 REFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHH
Confidence 887777776654
No 248
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=32.61 E-value=3.7e+02 Score=25.87 Aligned_cols=121 Identities=12% Similarity=0.176 Sum_probs=68.2
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHH
Q 010019 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA 436 (520)
Q Consensus 357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~ 436 (520)
..|.+++...++..-+.+..=++.+++.|+..-..|..+-....+..++++......-..+..-...+|..|...+|+
T Consensus 89 ~~L~~fv~~npkAWap~i~~Wsl~Llgelssk~~~R~~~~~~~~~~e~l~~Wmsc~a~r~L~~i~~~cl~~l~~~~~d-- 166 (213)
T PF14837_consen 89 DVLSRFVEANPKAWAPLISAWSLELLGELSSKYAGRRGVPHSSSLNELLQLWMSCQATRTLMDIYNQCLSKLINSCPD-- 166 (213)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHhcHHHHHHHHHHHHHHHHHHcCCcH--
Confidence 355555555444333566677889999998776667666666677777777652211112222233333333333443
Q ss_pred HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHH
Q 010019 437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKL 491 (520)
Q Consensus 437 ~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~l 491 (520)
+.++.+++.--.|+... -|.+..+++- -......+++.|+...
T Consensus 167 ------~Cv~~Ll~tsv~hsphF------DWVvahigs~FP~tIis~lL~~GlkdF 210 (213)
T PF14837_consen 167 ------ACVDALLDTSVQHSPHF------DWVVAHIGSCFPGTIISRLLSCGLKDF 210 (213)
T ss_pred ------HHHHHHHHHHhccCCch------hhhHHHHHhhCcHHHHHHHHHHHHHHh
Confidence 23445555554565544 3778888654 3445566777776643
No 249
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=32.45 E-value=2.7e+02 Score=24.72 Aligned_cols=74 Identities=9% Similarity=-0.043 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhc---ccCcHHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM---RCGSKRVLDSCL 197 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~---~~~~~~~~~~al 197 (520)
..+++.|+..+.+ +++..+..||.-|..+-+. =+......++..+.+.-|+++++.. ...+..+...++
T Consensus 37 k~a~rai~krl~~-------~n~~v~l~AL~LLe~~vkN-CG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil 108 (139)
T cd03567 37 QLAVRLLAHKIQS-------PQEKEALQALTVLEACMKN-CGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKII 108 (139)
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH-cCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 4688889998887 7788888888777665542 2566777888888998899988631 123556665555
Q ss_pred HHHHH
Q 010019 198 KTMAL 202 (520)
Q Consensus 198 ~~La~ 202 (520)
..+-.
T Consensus 109 ~li~~ 113 (139)
T cd03567 109 ELLYS 113 (139)
T ss_pred HHHHH
Confidence 55443
No 250
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.40 E-value=2.5e+02 Score=31.06 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=55.3
Q ss_pred CCHHHHHHH-HhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010019 261 KIDELILEI-LSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA 339 (520)
Q Consensus 261 g~i~~Lv~l-L~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~ 339 (520)
|++..|+.. ....++++.++|.-+|.-.|.+|- ..++..+++|....+..+..-.+.+|+-
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------------------~~lv~tvelLs~shN~hVR~g~AvaLGi 612 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------------------DLLVGTVELLSESHNFHVRAGVAVALGI 612 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc------------------chhhHHHHHhhhccchhhhhhhHHHhhh
Confidence 455555555 333345888888888888777663 2466677777765566676666667765
Q ss_pred hccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019 340 VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (520)
Q Consensus 340 La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La 386 (520)
-+.+...+. +++.|-.++.+ .+.-|...||-+++-+-
T Consensus 613 acag~G~~~------a~diL~~L~~D----~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 613 ACAGTGDKV------ATDILEALMYD----TNDFVRQSAMIAVGMIL 649 (926)
T ss_pred hhcCCccHH------HHHHHHHHhhC----cHHHHHHHHHHHHHHHH
Confidence 443221110 12233333433 22246666676766654
No 251
>PF12125 Beta-TrCP_D: D domain of beta-TrCP; InterPro: IPR021977 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found associated with PF00646 from PFAM, PF00400 from PFAM. The protein that contains this domain functions as a ubiquitin ligase. Ubiquitination is required to direct proteins towards the proteasome for degradation. This protein is part of the WD40 class of F box proteins. The D domain of these F box proteins is involved in mediating the dimerisation of the protein. Dimerisation is necessary to polyubiquitinate substrates so this D domain is vital in directing substrates towards the proteasome for degradation. ; PDB: 2P64_A 1P22_A.
Probab=31.15 E-value=10 Score=25.99 Aligned_cols=17 Identities=47% Similarity=0.913 Sum_probs=12.9
Q ss_pred hhhhccCcccccccccc
Q 010019 7 SYYKHFSNSEQIDFQKQ 23 (520)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (520)
.||.-+|.+||+||-.+
T Consensus 2 ~~F~~Wse~eQvdFVe~ 18 (40)
T PF12125_consen 2 EYFDKWSESEQVDFVEQ 18 (40)
T ss_dssp HHHTTS-HHHHHHHHHH
T ss_pred chhhccCchhHHHHHHH
Confidence 47888899999999654
No 252
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=30.95 E-value=1.8e+02 Score=23.82 Aligned_cols=70 Identities=10% Similarity=0.000 Sum_probs=45.3
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh
Q 010019 403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (520)
Q Consensus 403 ~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e 478 (520)
..+..|. .+.+.++.+|+..|+.|..... ...+--.+.+..+...++ + .++-|--+|.-.+..|+...|+
T Consensus 7 ~al~~L~--dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~-d-~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLN--DPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK-D-EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHcc--CCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC-C-CCchHHHHHHHHHHHHHHHChH
Confidence 3444554 5678899999999999986443 111212344555666564 3 4666777888888888766665
No 253
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=30.67 E-value=1.5e+02 Score=27.82 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=52.8
Q ss_pred CCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhhC
Q 010019 399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK--FPNAQQLQRSSCFMIRNLVARN 476 (520)
Q Consensus 399 g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~--~~~~~~vqk~A~~aL~nL~~~~ 476 (520)
...+.+..-+. ++++-+++.++-++...... +-.+.+...... +..+.-||+...|+|+.+...+
T Consensus 120 ~~~~~~~~W~~--s~~~w~rR~~~v~~~~~~~~-----------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 120 EALELLEKWAK--SDNEWVRRAAIVMLLRYIRK-----------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp GHHHHHHHHHH--CSSHHHHHHHHHCTTTHGGG-----------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 34566666777 78899999888777666542 333444444433 3357789999999999998889
Q ss_pred hhhHHHHHhCC
Q 010019 477 PENRKLLLSNG 487 (520)
Q Consensus 477 ~e~~~~l~~~G 487 (520)
++....+++..
T Consensus 187 ~~~v~~~l~~~ 197 (213)
T PF08713_consen 187 PDEVLEFLQKN 197 (213)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHC
Confidence 98888777653
No 254
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=29.61 E-value=90 Score=26.57 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=30.6
Q ss_pred HHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhc
Q 010019 331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (520)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~ 365 (520)
-.....|..|+..++.-..+++.|+++.|+.+|..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H 98 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSH 98 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC
Confidence 44567788899999999999999999999999975
No 255
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=29.50 E-value=4.2e+02 Score=24.29 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=50.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhhChhh
Q 010019 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK--FPNAQQLQRSSCFMIRNLVARNPEN 479 (520)
Q Consensus 402 ~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~--~~~~~~vqk~A~~aL~nL~~~~~e~ 479 (520)
+.+-.-+. ++++-+++.++.++.....+ .+-.+.++..... +.++.-||+...|+|+.+...+++.
T Consensus 108 ~~~~~w~~--s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~ 175 (197)
T cd06561 108 DLLEEWAK--SENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPER 175 (197)
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 56666666 77888999888888776653 2233444444433 2346679999999999998778877
Q ss_pred HHHHHhC
Q 010019 480 RKLLLSN 486 (520)
Q Consensus 480 ~~~l~~~ 486 (520)
...+++.
T Consensus 176 v~~~l~~ 182 (197)
T cd06561 176 VIAFLEK 182 (197)
T ss_pred HHHHHHH
Confidence 6666654
No 256
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=29.27 E-value=3.2e+02 Score=31.05 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=73.2
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCC
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSD 389 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--~~~ 389 (520)
-+|.|+..|..+++|.+..++...|+.+++ .+....... ..|.+-|.+ .+..|++.|+-++..|- +.-
T Consensus 934 hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t-----~yLyrrL~D----e~~~V~rtclmti~fLilagq~ 1004 (1128)
T COG5098 934 HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHT-----HYLYRRLGD----EDADVRRTCLMTIHFLILAGQL 1004 (1128)
T ss_pred HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHH-----HHHHHHhcc----hhhHHHHHHHHHHHHHHHccce
Confidence 589999999999988888899988888774 333333322 344444443 24589999999998885 332
Q ss_pred chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019 390 SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS 432 (520)
Q Consensus 390 ~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~ 432 (520)
..| |-++.+..+|. .+++.+..-|=..+..++..+
T Consensus 1005 KVK------Gqlg~ma~~L~--deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 1005 KVK------GQLGKMALLLT--DEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred eec------cchhhhHhhcc--CCcchHHHHHHHHHHHHHhcc
Confidence 222 66778888887 678888888888888887643
No 257
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.74 E-value=9.7e+02 Score=27.78 Aligned_cols=129 Identities=15% Similarity=0.222 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhCCCchH-HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHH-HHHH-------hcC
Q 010019 373 TVARICCSLLSKLAGSDSNK-SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA-ARAM-------EAG 443 (520)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k-~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~-~~i~-------~~G 443 (520)
.....+.++|..+..+.=.- ..+.....+-.+..+|. ...+...-.++.+|+.+|.-..++. +.++ +..
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~ald--pr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~ 284 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALD--PREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAK 284 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcC--ccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhc
Confidence 45667888888887554222 23334455777777887 5567777888888888886333332 1221 122
Q ss_pred c---HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh-------hHHHHHhCCHHHHHHHHHHhCcchHHH
Q 010019 444 S---GDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE-------NRKLLLSNGVEKLIRQAKENHEICKDA 505 (520)
Q Consensus 444 ~---i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e-------~~~~l~~~G~~~lL~~~~~~h~~~~~~ 505 (520)
- ...|++.|... ...+. .-||+-+-|-..++++ .|..+...|....|........+..|+
T Consensus 285 ~veRF~piv~gl~~~-e~~~l-~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldv 354 (1102)
T KOG1924|consen 285 PVERFRPIVEGLDFL-EKQQL-QVACMQFINALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDV 354 (1102)
T ss_pred chhhhhhHHHHHhcc-chHHH-HHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHH
Confidence 2 35667777542 33333 3477766666556553 355666778777777665554333333
No 258
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=28.50 E-value=2.6e+02 Score=23.36 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=43.0
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHH
Q 010019 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVM 422 (520)
Q Consensus 357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~ 422 (520)
..+..+|.-+... .......++..|..|+.+|.....+.+.|+++.|-++-. .-++..+...-
T Consensus 30 ~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~--~~~~~~~~~id 92 (98)
T PF14726_consen 30 LLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP--NVEPNLQAEID 92 (98)
T ss_pred HHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh--cCCHHHHHHHH
Confidence 3455555544322 235778999999999999999999999999998666543 23455444433
No 259
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=4.8e+02 Score=26.66 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019 314 ARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (520)
Q Consensus 314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (520)
|..+++-+++ ..+.+-+.||.++..+.. .++.+... .+.++..|.......+.-|.+.|-.+|..+..+-.-.
T Consensus 131 ii~vvkslKN-lRS~VsraA~~t~~difs~ln~~i~~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~ 204 (334)
T KOG2933|consen 131 IIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNSIDQE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ 204 (334)
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH
Confidence 4445555543 235677888999888873 33444442 3344444332223345678899999998876442211
Q ss_pred HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
-.++.|+..++ ..++.++..++....+...
T Consensus 205 ------~~L~~L~~~~~--~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 205 ------KLLRKLIPILQ--HSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred ------HHHHHHHHHHh--hhchhhhhhhhccccccce
Confidence 23455666676 3478888888877766544
No 260
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=28.19 E-value=1.9e+02 Score=23.72 Aligned_cols=60 Identities=23% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019 372 KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (520)
Q Consensus 372 ~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~ 434 (520)
+.++..++..|+.|....+ ...+--.+.+..+...|+ .+++-|=-+|..+|+.|+...|+
T Consensus 17 ~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~--d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 17 PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLK--DEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHHHChH
Confidence 4799999999999986554 111222245667777776 66888999999999999987664
No 261
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=27.86 E-value=1.4e+02 Score=33.20 Aligned_cols=148 Identities=11% Similarity=0.051 Sum_probs=71.0
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhccCh-hhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC----
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG---- 387 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~-e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~---- 387 (520)
++..+.+++....-. -..+..+|..|.... .--..++ ..+..++.......++.+...|+-+++.|..
T Consensus 396 av~~i~~~I~~~~~~--~~ea~~~l~~l~~~~~~Pt~e~l-----~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT--DDEAAQLLASLPFHVRRPTEELL-----KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHHH-----HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCC--HHHHHHHHHHHHhhcCCCCHHHH-----HHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 466667777664311 123445555554221 1112222 3444444321111123566777777777752
Q ss_pred CC-------chHHHHHhcCCHHHHHHHHhc--cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC-CC
Q 010019 388 SD-------SNKSAIIENGGMDKLIVVSAR--FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF-PN 457 (520)
Q Consensus 388 ~~-------~~k~~Iv~~g~l~~Lv~lL~~--~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~-~~ 457 (520)
.. .....+. ...++.+...+.. ...+..-+.-++.+|.|+-. | ..++.+...+... ..
T Consensus 469 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCII-EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp T-----------SS---GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S
T ss_pred cccccccccccchhhH-HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcccc
Confidence 21 1111222 2356666666652 13455666778888888764 2 2445555444433 33
Q ss_pred CHHHHHHHHHHHHHHhhhChhh
Q 010019 458 AQQLQRSSCFMIRNLVARNPEN 479 (520)
Q Consensus 458 ~~~vqk~A~~aL~nL~~~~~e~ 479 (520)
...++..|.||++.++...++.
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~ 558 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEK 558 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHH
T ss_pred chHHHHHHHHHHHHHhhcCcHH
Confidence 5667778999999886666643
No 262
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=27.47 E-value=69 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.559 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 010019 66 QEAFDEVVKENMEDLGMEPTEALQDAIQTL 95 (520)
Q Consensus 66 QetfDe~V~eni~~~~m~p~eal~~aI~qf 95 (520)
-++++++++++-+++.|+ .+|+++.|++|
T Consensus 30 k~aIE~aI~~~~~~~~L~-~~a~~~vie~f 58 (133)
T PF12960_consen 30 KEAIEQAIREHFDGNRLD-PDAVKEVIEKF 58 (133)
T ss_pred HHHHHHHHHHHcCCCcCC-HHHHHHHHHHH
Confidence 478999999999999999 88999999998
No 263
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=26.64 E-value=18 Score=22.21 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=7.2
Q ss_pred hhHHHHHHHH
Q 010019 64 ISQEAFDEVV 73 (520)
Q Consensus 64 isQetfDe~V 73 (520)
.|||||...=
T Consensus 10 LSQeTF~~LW 19 (25)
T PF08563_consen 10 LSQETFSDLW 19 (25)
T ss_dssp -STCCHHHHH
T ss_pred ccHHHHHHHH
Confidence 7999998653
No 264
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=26.44 E-value=56 Score=26.66 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhhcCcccCCc
Q 010019 85 TEALQDAIQTLSLQGVDLSGI 105 (520)
Q Consensus 85 ~eal~~aI~qf~~qgvdls~i 105 (520)
+|-|.+|++||..+++-.++|
T Consensus 63 qEIl~dAlqQWA~~n~kY~DI 83 (91)
T PF15127_consen 63 QEILSDALQQWAENNIKYSDI 83 (91)
T ss_pred HHHHHHHHHHHHHhCccccCC
Confidence 356889999999988877776
No 265
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=26.33 E-value=2e+02 Score=27.12 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=38.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHhhhChhhHHHHHhC
Q 010019 434 ENAARAMEAGSGDLAIQAMLKFPNA----------------QQLQRSSCFMIRNLVARNPENRKLLLSN 486 (520)
Q Consensus 434 ~~~~~i~~~G~i~~lv~~L~~~~~~----------------~~vqk~A~~aL~nL~~~~~e~~~~l~~~ 486 (520)
.+.+-+.+.|+++.++.+|+..-+. ..+.+.++..|+.++..|++++..+.++
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~ 102 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH 102 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4455566778888888888653222 3678899999999998899998877653
No 266
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=25.57 E-value=3.3e+02 Score=22.73 Aligned_cols=51 Identities=12% Similarity=-0.044 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCC--ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHh
Q 010019 314 ARALVHSLHAGL--SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCID 364 (520)
Q Consensus 314 l~~Lv~lL~~~~--~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~ 364 (520)
-..+..+|+++. +......+...|..|+..+.-.+.+.+.|+++.|-++-.
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 355666677665 334567788888999999888899999999998666543
No 267
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=25.53 E-value=1.5e+02 Score=32.76 Aligned_cols=18 Identities=6% Similarity=0.051 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 010019 373 TVARICCSLLSKLAGSDS 390 (520)
Q Consensus 373 ~v~~~al~aL~~La~~~~ 390 (520)
++.+.|+.++--|+..++
T Consensus 55 ~l~~~Ai~a~~DLcEDed 72 (556)
T PF05918_consen 55 DLQEEAINAQLDLCEDED 72 (556)
T ss_dssp GGHHHHHHHHHHHHT-SS
T ss_pred hhHHHHHHHHHHHHhccc
Confidence 466666666666665543
No 268
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.05 E-value=5.7e+02 Score=23.87 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-H-----cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccCh-hhHHHH
Q 010019 278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-----IGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSV 350 (520)
Q Consensus 278 ~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~-----~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~-e~~~~i 350 (520)
+.+|...|..++..-+.|.-|| |+..+. + .+.-+.|+..+-..+++.+...|+.+|..|-... .+-...
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~----yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFG----YWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHh----hHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 4456666666666544555333 344444 2 2345666666665566677778888887775322 211111
Q ss_pred HhcC-------------------ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhc
Q 010019 351 AENG-------------------GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSAR 410 (520)
Q Consensus 351 ~~~G-------------------gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~ 410 (520)
-+.. ....|+..|.... +..+....+.+|..|..+ |=.|- +.|-++.++.-++.
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~---~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~ 152 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK---SPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRP 152 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHH
Confidence 1111 1234555565422 347889999999999754 43332 23555555554433
Q ss_pred c--CCCHHHHHHHHHHHHHHhc
Q 010019 411 F--SDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 411 ~--~~~~~v~~~a~~aL~nLa~ 430 (520)
+ +.++.++..++.++..|..
T Consensus 153 ~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 153 LLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHhcCCCcHHHHHHHHHHHHHc
Confidence 1 4678888888888877754
No 269
>PHA01748 hypothetical protein
Probab=24.27 E-value=97 Score=23.28 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 010019 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTL 95 (520)
Q Consensus 63 ~isQetfDe~V~eni~~~~m~p~eal~~aI~qf 95 (520)
+|++|...+ +-+..+..+++..|+++++|+++
T Consensus 8 rLp~el~~e-ld~~a~~~g~~RSE~Ir~Ai~~~ 39 (60)
T PHA01748 8 KIEEDLLEL-LDRYAIKHGLNRSEAIRKAIEKM 39 (60)
T ss_pred ECCHHHHHH-HHHHHHHhCCCHHHHHHHHHHHH
Confidence 355554432 33444456889999999999986
No 270
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=23.56 E-value=1.2e+03 Score=27.20 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHH---HHHHHHHHHHhhcccccchhHHhcC
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRV---LDSCLKTMALLVHDVQSTETFRTGG 217 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~---~~~al~~La~l~~~~~~~~~i~~~g 217 (520)
.+...+..++..|..+++.. ....+.. ..+..|.|++-+... -+.+ +..|+.++.+... ...
T Consensus 307 aN~~v~~~aa~~l~~ia~~l-r~~~~~~--~~~v~p~lld~lkek---k~~l~d~l~~~~d~~~ns~~---------l~~ 371 (815)
T KOG1820|consen 307 ANINVVMLAAQILELIAKKL-RPLFRKY--AKNVFPSLLDRLKEK---KSELRDALLKALDAILNSTP---------LSK 371 (815)
T ss_pred cchhHHHHHHHHHHHHHHhc-chhhHHH--HHhhcchHHHHhhhc---cHHHHHHHHHHHHHHHhccc---------HHH
Confidence 44556667788888888751 2222222 246778887777542 3333 4444554444211 112
Q ss_pred CcHHHHHHHhcCCCChHHHHHHHHHHH
Q 010019 218 GPKLLVNILIDGNEDPEILNSGFAVVA 244 (520)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (520)
..+.+++.|+. .++.+...+..++.
T Consensus 372 ~~~~I~e~lk~--knp~~k~~~~~~l~ 396 (815)
T KOG1820|consen 372 MSEAILEALKG--KNPQIKGECLLLLD 396 (815)
T ss_pred HHHHHHHHhcC--CChhhHHHHHHHHH
Confidence 34566666663 34544444334443
No 271
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=23.46 E-value=2.8e+02 Score=25.24 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=48.6
Q ss_pred ccccCCCCCcchhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH-hhcCcccCCccccCCCCCCCCCCcHHHHHHHH
Q 010019 49 DLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLSGIVKCVPGESSLKDNPLIQSLERL 127 (520)
Q Consensus 49 ~~~~~~~~~~~~~~~isQetfDe~V~eni~~~~m~p~eal~~aI~qf-~~qgvdls~i~~~~~~~~~~~~~~~~~~l~~L 127 (520)
|+|+...+.......-++|. ..+...+=.--+.+.+.=+.+ +.=|..+ | -++.|. .....+..+
T Consensus 63 ~lg~~~~~~~~~~~~S~~EQ------agl~~~~~~~~~~L~~lN~~Y~~kFGfpF--i-i~v~g~------s~~~IL~~l 127 (158)
T TIGR03180 63 RIGEKPAGQAAYAATSRREQ------AGVDGADEETRAALLEGNAAYEEKFGRIF--L-IRAAGR------SAEEMLDAL 127 (158)
T ss_pred cccCccccccchhhhhHHHH------hcccCCCHHHHHHHHHHHHHHHHHCCCeE--E-EeeCCC------CHHHHHHHH
Confidence 77776654444333222333 144433322333445555555 3345432 3 333332 234568888
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHHHHHHhc
Q 010019 128 KQLDLNSKDKFSDEDLNEMMGLFDKLIELCG 158 (520)
Q Consensus 128 ~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~ 158 (520)
...+.+ ...++...++.++.+++.
T Consensus 128 ~~Rl~n-------~~e~E~~~al~Ev~kIa~ 151 (158)
T TIGR03180 128 QARLPN-------DPEQELTIAAEQLRKINR 151 (158)
T ss_pred HHHhCC-------CHHHHHHHHHHHHHHHHH
Confidence 888887 556778899999988775
No 272
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.27 E-value=1.2e+03 Score=27.00 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 412 ~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
-.+..|+..|+.+|+.+...++.....+ .-.+.+.+. -.+.+|...|..++.++-
T Consensus 477 LEn~ivRaaAv~alaKfg~~~~~l~~sI-----~vllkRc~~--D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFGAQDVVLLPSI-----LVLLKRCLN--DSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCCccccH-----HHHHHHHhc--CchHHHHHHHHHHHHHhh
Confidence 4577888999999999886554322221 223333332 246778888999999885
No 273
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=23.24 E-value=1.2e+02 Score=26.09 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=27.9
Q ss_pred cceecccccCCCCCcchhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhcCc
Q 010019 44 FFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGV 100 (520)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~isQetfDe~V~eni~~~~m~p~eal~~aI~qf~~qgv 100 (520)
|.||+|+ +|+.++++-+...-+.-..-+.. .. . .+.+++|...|.
T Consensus 5 lvVr~DL---~M~~GKiaAQ~~HAa~~~~~~~~--~~--~-----~~~~~~W~~~G~ 49 (115)
T TIGR00283 5 IVIRDDL---GMGKGKIAAQVCHAAIIGFLKSK--RK--N-----PSLRRKWLDEGQ 49 (115)
T ss_pred EEEeCCC---CCChhHHHHHHHHHHHHHHHHHH--hc--C-----HHHHHHHHHcCC
Confidence 6799998 79999887777665544322211 00 1 455677877774
No 274
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=23.07 E-value=1.4e+02 Score=26.28 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=48.9
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHH--HHHHHHHHHHHHh
Q 010019 360 LRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDAS--VLQEVMSIITVLS 429 (520)
Q Consensus 360 l~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~--v~~~a~~aL~nLa 429 (520)
++.|+....++++.++..|+.+|-.+..| +.....+.+...+..|..++......+. |++.+...|...+
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 33343333335678999999999988854 4566777777788899998876554444 8888887776655
No 275
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.73 E-value=4.4e+02 Score=23.47 Aligned_cols=73 Identities=8% Similarity=-0.056 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L 200 (520)
..+++.|+..+.+ .++..+..||.-|..+.+. =+......++....+..|+.+++.. .+..+...++..|
T Consensus 36 k~a~ral~KRl~~-------~n~~v~l~AL~LLe~~vkN-CG~~fh~evask~Fl~eL~kl~~~~--~~~~Vk~kil~li 105 (144)
T cd03568 36 KDCLKAIMKRLNH-------KDPNVQLRALTLLDACAEN-CGKRFHQEVASRDFTQELKKLINDR--VHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH-CCHHHHHHHhhHHHHHHHHHHhccc--CCHHHHHHHHHHH
Confidence 4688889888887 7888888888777666553 2556677778888888898888764 3566666555555
Q ss_pred HHh
Q 010019 201 ALL 203 (520)
Q Consensus 201 a~l 203 (520)
-..
T Consensus 106 ~~W 108 (144)
T cd03568 106 KQW 108 (144)
T ss_pred HHH
Confidence 443
No 276
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.43 E-value=3.2e+02 Score=24.00 Aligned_cols=71 Identities=7% Similarity=0.038 Sum_probs=50.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhcCcHHHHHHHHHhCCCCHH--HHHHHHHHHHHHh
Q 010019 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRS-PENAARAMEAGSGDLAIQAMLKFPNAQQ--LQRSSCFMIRNLV 473 (520)
Q Consensus 401 l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~-~~~~~~i~~~G~i~~lv~~L~~~~~~~~--vqk~A~~aL~nL~ 473 (520)
+..|..=|. +.+|.++-.|+..|-.+..+. +.....+.....+..+..+....+.... |++.+...|...+
T Consensus 44 ~~~l~krl~--~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 44 ARALRKRLK--HGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHT--TSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 345556665 578999999999988888655 3444556556677888887777665554 8888877777664
No 277
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=22.16 E-value=1.8e+02 Score=19.15 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhh
Q 010019 72 VVKENMEDLGMEPTEALQDAIQTLSL 97 (520)
Q Consensus 72 ~V~eni~~~~m~p~eal~~aI~qf~~ 97 (520)
.+.+-.+..+++.++.++.+|.+|-.
T Consensus 13 ~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 13 RLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 34555667889999999999999854
No 278
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.14 E-value=7.7e+02 Score=24.35 Aligned_cols=206 Identities=10% Similarity=0.103 Sum_probs=111.9
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~ 268 (520)
+......|+..|+.++..-+ .+.....-+..|++++.+.-++......++..+..+.....-.+ +....+++
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp--~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~------~~~~~i~~ 83 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLP--PDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP------ESAVKILR 83 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCC--HhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh------hhHHHHHH
Confidence 66677778888877764432 33344445677888775544555555555666665553322111 12333333
Q ss_pred HHhcC-C-----hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH--cCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019 269 ILSRQ-R-----NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGLSSPSLISASIALKAV 340 (520)
Q Consensus 269 lL~~~-~-----~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~--~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L 340 (520)
.+-.. . ...+......|..|.... + ..+.. .+.+..+++++....||.-+--++..+..+
T Consensus 84 ~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~----------~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 84 SLFQNVDVQSLPQSTRYAVYQLLDSLLENH--R----------EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHh--H----------HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 33222 1 144445666776665321 1 12222 245778888888777886666666666655
Q ss_pred ccChhhHHHHHhcCChHHHHHHHhcc------CCCCc------HHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHH
Q 010019 341 AVNDEICKSVAENGGIDALLRCIDDS------GLQGN------KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS 408 (520)
Q Consensus 341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~------~~~~~------~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL 408 (520)
...-+ + ....+-+.+.+..+ +...+ .++...-..+ |+.++.- ..-++|.|++=|
T Consensus 152 ~~~~~----~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~c---l~s~~~f-----a~~~~p~LleKL 217 (262)
T PF14500_consen 152 LQEFD----I--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNC---LSSTPLF-----APFAFPLLLEKL 217 (262)
T ss_pred HHhcc----c--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHH---hcCcHhh-----HHHHHHHHHHHH
Confidence 43222 1 23345556665432 11111 1333222222 3333322 224688999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhc
Q 010019 409 ARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 409 ~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
. ++.+.++..++.+|...+.
T Consensus 218 ~--s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 218 D--STSPSVKLDSLQTLKACIE 237 (262)
T ss_pred c--CCCcHHHHHHHHHHHHHHH
Confidence 8 7788899999999987654
No 279
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.57 E-value=1.4e+03 Score=28.60 Aligned_cols=138 Identities=10% Similarity=0.115 Sum_probs=78.2
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chhh-HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-C
Q 010019 312 GIARALVHSLHAGLSSPSLISASIALKAVAV-NDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-S 388 (520)
Q Consensus 312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~-~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~ 388 (520)
+.+..++..|.+ +...+...|..+|+.+.. ++.. +..-++.|.... ++.+ .+.|.++|+.+++.-.. .
T Consensus 816 ~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R---~~Ds-----sasVREAaldLvGrfvl~~ 886 (1692)
T KOG1020|consen 816 PYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR---LNDS-----SASVREAALDLVGRFVLSI 886 (1692)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh---hccc-----hhHHHHHHHHHHhhhhhcc
Confidence 456777777764 335677788899999874 4432 223333332222 2222 25799999999986643 3
Q ss_pred CchHHHHHhcCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHH-HHHHHH
Q 010019 389 DSNKSAIIENGGMDKLIVVSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSC 466 (520)
Q Consensus 389 ~~~k~~Iv~~g~l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~-vqk~A~ 466 (520)
++.-.+..+ .+ ..+. ...-.|++.+...|+-+|...|+--. ..+...+++.+-.++.+ +++-++
T Consensus 887 ~e~~~qyY~-----~i---~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 887 PELIFQYYD-----QI---IERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred HHHHHHHHH-----HH---HhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHH
Confidence 333333222 12 2222 23568999999999999987765432 12333444444334444 666666
Q ss_pred HHHHHH
Q 010019 467 FMIRNL 472 (520)
Q Consensus 467 ~aL~nL 472 (520)
..+.++
T Consensus 953 etf~kl 958 (1692)
T KOG1020|consen 953 ETFLKL 958 (1692)
T ss_pred HHHHHH
Confidence 666555
No 280
>PLN02892 isocitrate lyase
Probab=21.25 E-value=72 Score=35.00 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHhh
Q 010019 68 AFDEVVKENMEDLGMEPTEALQDAIQTLSL 97 (520)
Q Consensus 68 tfDe~V~eni~~~~m~p~eal~~aI~qf~~ 97 (520)
||||+|.+-|..++....+.-+ .+++|..
T Consensus 316 tf~eav~~~i~~~~~~~~~~~~-~~~~~~~ 344 (570)
T PLN02892 316 TFSEAVADAIKSMNISENEKRR-RLNEWMA 344 (570)
T ss_pred cHHHHHHHHHHhcccccchhHH-HHHHHHh
Confidence 7999998888777764444433 4666644
No 281
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=21.01 E-value=7.2e+02 Score=24.69 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=49.6
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh--HHHHHhcCChHHHHHHHhcc--------CCCCcHHHHHHHHHHH
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEI--CKSVAENGGIDALLRCIDDS--------GLQGNKTVARICCSLL 382 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~--~~~i~~~Ggv~~Ll~lL~~~--------~~~~~~~v~~~al~aL 382 (520)
.+|+++.++..+ +++.+..+|.+|..+..+-.. -..+.+.|-.+++-+.+... ++.+...+...+..+|
T Consensus 120 iiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 489999999876 577888999999988743221 12356667666665555432 1233467888888888
Q ss_pred HHhh
Q 010019 383 SKLA 386 (520)
Q Consensus 383 ~~La 386 (520)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 8884
No 282
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=20.74 E-value=29 Score=24.34 Aligned_cols=14 Identities=21% Similarity=0.683 Sum_probs=11.0
Q ss_pred chhhhhccCccccc
Q 010019 5 PKSYYKHFSNSEQI 18 (520)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (520)
+.++|+||.|.+.+
T Consensus 30 ~~~~y~~f~~k~~l 43 (47)
T PF00440_consen 30 KGSFYRYFPSKDDL 43 (47)
T ss_dssp HHHHHHHCSSHHHH
T ss_pred hhhHHHHcCCHHHH
Confidence 45789999998764
No 283
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.44 E-value=5.9e+02 Score=22.58 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhcc----CCCHHHHHHHHHHHHHHh
Q 010019 370 GNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARF----SDDASVLQEVMSIITVLS 429 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~----~~~~~v~~~a~~aL~nLa 429 (520)
.|+.++-.|+.+|-.+..| +.....|.+.+.+..++.++..+ ..++.|++..+..|-.-+
T Consensus 50 ~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 50 PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4567888888888888743 45667788888888899988632 246788888888776554
No 284
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=20.32 E-value=1.7e+02 Score=25.22 Aligned_cols=49 Identities=24% Similarity=0.378 Sum_probs=30.6
Q ss_pred cceecccccCCCCCcchhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhcCcccCCcc
Q 010019 44 FFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIV 106 (520)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~isQetfDe~V~eni~~~~m~p~eal~~aI~qf~~qgvdls~i~ 106 (520)
|.||+|+ +|+.++++-+...-+.-..... +.-. .+.++.|+..| ...|+
T Consensus 5 ivVr~DL---~m~~GKiaAQ~~HAa~~~~~~~----~~~~-----~~~~~~W~~~G--~~KiV 53 (115)
T cd02430 5 LVVRNDL---KMGKGKIAAQCAHAALGAYKKA----MKSN-----PELLRAWEREG--QKKIV 53 (115)
T ss_pred EEEeCCC---CCCcchHHHHHHHHHHHHHHHH----HhcC-----HHHHHHHHhcC--CcEEE
Confidence 6799998 7999988777776654433211 1111 34667788888 34554
No 285
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=20.26 E-value=1.1e+03 Score=25.36 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHHhccChhhHHHHHhcCChHHHHHHHh--ccCCCCcHHHHHHHHHHHHHhhCCC-chHHHHHhcC---CHHHH
Q 010019 331 ISASIALKAVAVNDEICKSVAENGGIDALLRCID--DSGLQGNKTVARICCSLLSKLAGSD-SNKSAIIENG---GMDKL 404 (520)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~--~~~~~~~~~v~~~al~aL~~La~~~-~~k~~Iv~~g---~l~~L 404 (520)
..+-.++.||+...--. -.+..|..+|. +.....+..+.+-|+..|+.+.... +.+..-+..+ .++.+
T Consensus 233 ~~~w~~m~nL~~S~~g~------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl 306 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHLGH------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSL 306 (464)
T ss_pred hhHHHHHHHHHcCccHH------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHH
Confidence 34444566665432111 12356677773 2222235678888888888876332 2222222222 56777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 405 IVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 405 v~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
..+|+ .+++.|--+.+..+.++-
T Consensus 307 ~~al~--~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 307 LNALK--SNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHh--CCCCeehHHHHHHHHHHH
Confidence 77887 445556556666666655
No 286
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=9.6e+02 Score=26.83 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC---CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCCh
Q 010019 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG---IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI 356 (520)
Q Consensus 280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g---~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv 356 (520)
.|-..+-.|..++|.-.-++.++..+-..+-.| ++..|+..--+..+.++.+.|..||+-++..+- ..+
T Consensus 516 ~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~l 587 (926)
T COG5116 516 MADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLL 587 (926)
T ss_pred HHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chh
Confidence 344555566666665443444443333444323 333333331111234577777777777665432 224
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
...+++|+.+ .|.-|.....-+|+--+.+...+. ++..|-.++. ..+.-|++.||-++..+..
T Consensus 588 v~tvelLs~s---hN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~--D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 588 VGTVELLSES---HNFHVRAGVAVALGIACAGTGDKV------ATDILEALMY--DTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred hHHHHHhhhc---cchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhh--CcHHHHHHHHHHHHHHHHh
Confidence 4556677653 233455555555554433222222 2233333444 4456788888888876654
Done!