Query 010019
Match_columns 520
No_of_seqs 302 out of 1681
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 18:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmz_A APC variant protein; pr 100.0 1E-39 3.4E-44 346.2 25.0 371 118-517 28-452 (458)
2 3ul1_B Importin subunit alpha- 100.0 1.8E-38 6.3E-43 342.9 33.1 389 95-513 26-428 (510)
3 3tpo_A Importin subunit alpha- 100.0 6.5E-37 2.2E-41 332.2 37.1 361 123-513 77-447 (529)
4 3now_A UNC-45 protein, SD10334 100.0 2.4E-36 8.2E-41 337.5 31.6 365 120-513 375-780 (810)
5 3nmz_A APC variant protein; pr 100.0 1.3E-35 4.4E-40 314.6 23.1 324 141-478 94-454 (458)
6 3l6x_A Catenin delta-1; cateni 100.0 3.5E-34 1.2E-38 310.4 30.3 361 123-514 49-475 (584)
7 1xm9_A Plakophilin 1; armadill 100.0 5.7E-34 2E-38 303.7 29.7 362 124-517 4-451 (457)
8 4b8j_A Importin subunit alpha- 100.0 1.8E-32 6.2E-37 296.3 38.3 361 122-513 74-441 (528)
9 3l6x_A Catenin delta-1; cateni 100.0 1.6E-33 5.3E-38 305.4 29.7 350 123-489 91-490 (584)
10 3nmw_A APC variant protein; AR 100.0 6.9E-34 2.4E-38 292.6 21.9 278 191-480 47-340 (354)
11 1xm9_A Plakophilin 1; armadill 100.0 2.9E-32 1E-36 290.5 28.5 301 174-498 3-382 (457)
12 1wa5_B Importin alpha subunit; 100.0 6.6E-31 2.3E-35 284.5 39.2 361 123-513 88-455 (530)
13 3now_A UNC-45 protein, SD10334 100.0 3.7E-31 1.2E-35 295.8 33.6 369 123-515 291-694 (810)
14 3nmw_A APC variant protein; AR 100.0 5.1E-32 1.7E-36 278.7 21.2 269 233-517 46-336 (354)
15 3ul1_B Importin subunit alpha- 100.0 1.8E-30 6.2E-35 280.4 32.3 360 123-512 101-475 (510)
16 2jdq_A Importin alpha-1 subuni 100.0 5.8E-30 2E-34 269.4 35.3 360 124-513 22-388 (450)
17 1jdh_A Beta-catenin; beta-cate 100.0 2.4E-30 8.3E-35 278.3 32.9 362 123-516 60-490 (529)
18 3tpo_A Importin subunit alpha- 100.0 3E-30 1E-34 279.8 33.3 359 123-511 120-493 (529)
19 1jdh_A Beta-catenin; beta-cate 100.0 2.3E-30 7.8E-35 278.4 31.6 364 123-517 18-387 (529)
20 2z6h_A Catenin beta-1, beta-ca 100.0 1.5E-29 5.1E-34 280.5 29.0 364 123-517 15-384 (644)
21 4b8j_A Importin subunit alpha- 100.0 1.9E-28 6.4E-33 264.8 35.8 362 123-516 118-497 (528)
22 2z6h_A Catenin beta-1, beta-ca 100.0 1.7E-28 5.8E-33 272.1 35.9 364 122-515 56-486 (644)
23 2jdq_A Importin alpha-1 subuni 100.0 3.3E-28 1.1E-32 256.0 32.5 360 123-514 65-442 (450)
24 2z6g_A B-catenin; FULL-length, 100.0 1.7E-28 5.8E-33 277.8 31.1 369 123-516 151-582 (780)
25 1wa5_B Importin alpha subunit; 100.0 8.6E-28 2.9E-32 260.0 34.6 360 123-515 131-510 (530)
26 2z6g_A B-catenin; FULL-length, 100.0 1.2E-27 4E-32 270.9 33.5 364 123-516 193-623 (780)
27 4hxt_A De novo protein OR329; 99.9 3.3E-26 1.1E-30 221.5 23.3 240 217-476 2-243 (252)
28 4db8_A Armadillo-repeat protei 99.9 6.7E-26 2.3E-30 220.5 19.2 238 217-474 12-251 (252)
29 4hxt_A De novo protein OR329; 99.9 6.6E-25 2.2E-29 212.3 22.4 241 261-519 2-245 (252)
30 4db8_A Armadillo-repeat protei 99.9 7.1E-24 2.4E-28 206.2 20.4 237 261-515 12-251 (252)
31 3tt9_A Plakophilin-2; cell adh 99.9 2.7E-24 9.2E-29 207.7 15.3 203 218-431 9-230 (233)
32 3opb_A SWI5-dependent HO expre 99.9 3.9E-23 1.3E-27 227.3 24.6 322 175-515 336-728 (778)
33 3tt9_A Plakophilin-2; cell adh 99.9 1.3E-23 4.3E-28 203.0 14.6 200 262-475 9-230 (233)
34 3opb_A SWI5-dependent HO expre 99.9 1.5E-22 5.3E-27 222.6 24.8 352 118-497 330-757 (778)
35 4db6_A Armadillo repeat protei 99.9 3.8E-22 1.3E-26 188.6 20.2 198 259-474 10-209 (210)
36 4db6_A Armadillo repeat protei 99.9 1.1E-21 3.8E-26 185.4 20.9 196 310-514 10-208 (210)
37 1xqr_A HSPBP1 protein; armadil 99.9 7.9E-21 2.7E-25 190.5 21.9 213 276-506 55-275 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 2.8E-20 9.7E-25 186.5 22.9 223 234-472 55-285 (296)
39 3grl_A General vesicular trans 99.7 4.5E-14 1.5E-18 152.0 29.5 344 118-486 17-406 (651)
40 3grl_A General vesicular trans 99.6 5.5E-14 1.9E-18 151.3 24.4 300 174-487 22-355 (651)
41 4gmo_A Putative uncharacterize 99.2 1.2E-10 4.3E-15 129.6 14.7 201 261-473 34-257 (684)
42 4fdd_A Transportin-1; heat rep 99.2 3.7E-10 1.3E-14 128.6 17.7 337 123-499 129-495 (852)
43 4gmo_A Putative uncharacterize 99.1 7.6E-10 2.6E-14 123.2 17.7 197 312-513 34-256 (684)
44 1oyz_A Hypothetical protein YI 99.1 9.5E-09 3.2E-13 100.9 21.9 228 215-514 21-249 (280)
45 1oyz_A Hypothetical protein YI 99.1 2E-08 6.9E-13 98.5 22.1 251 123-469 24-277 (280)
46 4fdd_A Transportin-1; heat rep 98.9 6.4E-08 2.2E-12 110.1 22.4 349 141-515 371-742 (852)
47 3ltm_A Alpha-REP4; protein eng 98.9 6.2E-08 2.1E-12 90.9 17.0 186 217-475 19-204 (211)
48 3ltj_A Alpharep-4; protein eng 98.8 1E-07 3.5E-12 88.6 17.0 185 216-473 13-197 (201)
49 3ltm_A Alpha-REP4; protein eng 98.8 9.9E-08 3.4E-12 89.4 16.5 187 172-431 18-204 (211)
50 3ltj_A Alpharep-4; protein eng 98.8 1.7E-07 5.7E-12 87.2 15.7 185 172-429 13-197 (201)
51 2vgl_B AP-2 complex subunit be 98.7 9.6E-07 3.3E-11 96.4 22.6 305 124-473 123-456 (591)
52 2vgl_B AP-2 complex subunit be 98.7 8E-07 2.7E-11 97.1 21.7 271 174-479 122-424 (591)
53 1b3u_A Protein (protein phosph 98.7 2.9E-06 1E-10 91.2 24.5 302 172-514 280-586 (588)
54 1w63_A Adapter-related protein 98.6 1.3E-05 4.5E-10 87.9 28.7 287 173-508 142-462 (618)
55 1b3u_A Protein (protein phosph 98.6 2.2E-06 7.5E-11 92.2 20.5 265 174-474 165-431 (588)
56 1w63_A Adapter-related protein 98.6 6.8E-06 2.3E-10 90.2 24.6 264 173-485 179-462 (618)
57 1qgr_A Protein (importin beta 98.6 4.8E-06 1.6E-10 94.1 23.2 326 123-475 129-480 (876)
58 1ibr_B P95, importin beta-1 su 98.5 3.7E-07 1.3E-11 95.1 11.7 283 172-475 127-438 (462)
59 2bpt_A Importin beta-1 subunit 98.4 6.9E-06 2.4E-10 92.6 19.7 326 122-475 134-483 (861)
60 1ho8_A Vacuolar ATP synthase s 98.4 5E-05 1.7E-09 79.2 23.5 324 168-512 72-470 (480)
61 1ibr_B P95, importin beta-1 su 98.4 4.6E-06 1.6E-10 86.8 15.8 283 123-430 129-437 (462)
62 1qgr_A Protein (importin beta 98.3 1.2E-05 4E-10 90.9 18.4 318 172-513 127-477 (876)
63 2bpt_A Importin beta-1 subunit 98.1 5.1E-05 1.7E-09 85.5 18.7 310 141-479 381-716 (861)
64 1u6g_C TIP120 protein, CAND1; 97.9 2.7E-05 9.3E-10 91.9 11.8 271 123-432 7-286 (1230)
65 3dad_A FH1/FH2 domain-containi 97.9 0.00039 1.3E-08 69.3 17.0 177 317-500 123-318 (339)
66 2vgl_A Adaptor protein complex 97.8 0.038 1.3E-06 60.4 33.6 295 123-475 112-434 (621)
67 2vgl_A Adaptor protein complex 97.6 0.012 4.1E-07 64.3 24.8 268 176-484 114-406 (621)
68 4ady_A RPN2, 26S proteasome re 97.6 0.068 2.3E-06 60.5 30.9 207 219-479 474-681 (963)
69 1ho8_A Vacuolar ATP synthase s 97.5 0.081 2.8E-06 55.2 28.6 239 222-476 172-478 (480)
70 3b2a_A TON_1937, putative unch 97.3 0.003 1E-07 59.6 13.3 183 174-389 34-220 (265)
71 4ady_A RPN2, 26S proteasome re 97.2 0.05 1.7E-06 61.6 24.2 279 174-519 393-680 (963)
72 1te4_A Conserved protein MTH18 97.2 5E-05 1.7E-09 65.6 -0.4 120 311-471 11-130 (131)
73 3dad_A FH1/FH2 domain-containi 97.1 0.033 1.1E-06 55.4 19.1 185 265-464 122-326 (339)
74 1te4_A Conserved protein MTH18 97.1 6.5E-05 2.2E-09 64.8 -0.6 119 261-427 12-130 (131)
75 2qk2_A LP04448P; mini spindles 96.9 0.02 6.9E-07 54.2 15.6 181 265-474 19-205 (242)
76 1u6g_C TIP120 protein, CAND1; 96.9 0.061 2.1E-06 63.2 22.4 274 175-477 436-724 (1230)
77 2qk2_A LP04448P; mini spindles 96.8 0.0095 3.3E-07 56.5 11.9 181 221-430 19-205 (242)
78 2iw3_A Elongation factor 3A; a 96.8 0.045 1.5E-06 62.4 18.9 250 232-513 65-322 (986)
79 2iw3_A Elongation factor 3A; a 96.5 0.34 1.2E-05 55.3 23.8 305 121-473 13-323 (986)
80 3b2a_A TON_1937, putative unch 96.2 0.1 3.6E-06 49.2 14.6 184 219-431 35-219 (265)
81 3c2g_A SYS-1 protein; beta-cat 95.6 0.26 9E-06 49.0 14.8 134 333-472 263-401 (619)
82 2qk1_A Protein STU2; STU2P, XM 95.6 0.32 1.1E-05 46.5 15.5 188 267-473 22-219 (249)
83 3tjz_B Coatomer subunit gamma; 95.4 0.29 9.8E-06 49.5 14.9 217 174-437 105-323 (355)
84 2db0_A 253AA long hypothetical 95.3 1.7 5.8E-05 39.6 18.5 197 234-473 47-245 (253)
85 2qk1_A Protein STU2; STU2P, XM 95.1 0.21 7.1E-06 47.7 12.5 191 222-430 21-220 (249)
86 2db0_A 253AA long hypothetical 95.0 1.8 6.1E-05 39.4 17.1 186 262-484 33-220 (253)
87 2f31_A Diaphanous protein homo 94.7 1 3.5E-05 42.5 15.9 149 344-497 34-209 (233)
88 4hat_C Exportin-1; heat repeat 94.5 4.7 0.00016 46.4 23.8 96 370-474 465-569 (1023)
89 3c2g_A SYS-1 protein; beta-cat 93.9 0.2 6.9E-06 49.8 9.1 124 373-501 258-381 (619)
90 2fv2_A RCD1 required for cell 93.9 1.7 5.9E-05 41.4 15.2 178 236-428 73-266 (268)
91 1wa5_C Importin alpha RE-expor 93.6 10 0.00035 43.1 24.2 327 123-474 124-525 (960)
92 3tjz_B Coatomer subunit gamma; 93.2 2.4 8E-05 42.7 16.0 139 314-477 70-208 (355)
93 2x1g_F Cadmus; transport prote 93.1 14 0.00049 41.7 24.5 145 328-484 479-626 (971)
94 3eg5_B Protein diaphanous homo 93.1 3 0.0001 42.4 16.8 148 344-496 100-274 (383)
95 2x1g_F Cadmus; transport prote 93.0 1.7 5.9E-05 49.4 16.7 216 192-430 480-722 (971)
96 2bnx_A Diaphanous protein homo 92.5 3.6 0.00012 41.8 16.6 147 345-496 39-212 (386)
97 2x19_B Importin-13; nuclear tr 92.0 19 0.00066 40.5 24.4 221 189-429 462-713 (963)
98 3ebb_A Phospholipase A2-activa 91.6 3.2 0.00011 40.8 14.3 155 337-499 126-288 (304)
99 2fv2_A RCD1 required for cell 90.9 5.6 0.00019 37.9 14.4 159 191-351 71-233 (268)
100 2x19_B Importin-13; nuclear tr 90.6 26 0.00087 39.5 25.6 316 173-513 529-892 (963)
101 2f31_A Diaphanous protein homo 89.8 3.6 0.00012 38.6 12.5 152 211-366 38-210 (233)
102 1wa5_C Importin alpha RE-expor 89.2 34 0.0011 38.7 23.2 184 232-429 471-669 (960)
103 3ebb_A Phospholipase A2-activa 88.9 12 0.00043 36.5 16.0 137 232-383 161-301 (304)
104 3eg5_B Protein diaphanous homo 88.6 6.3 0.00022 39.9 14.1 153 211-366 104-276 (383)
105 4hat_C Exportin-1; heat repeat 87.8 4.3 0.00015 46.8 13.6 150 327-485 467-631 (1023)
106 3ibv_A Exportin-T; karyopherin 86.6 24 0.00082 40.3 18.8 227 220-474 493-768 (980)
107 2bnx_A Diaphanous protein homo 83.9 17 0.00059 36.7 14.4 149 216-366 46-214 (386)
108 1lsh_A Lipovitellin (LV-1N, LV 75.5 9.7 0.00033 44.0 10.3 135 314-470 393-539 (1056)
109 3ibv_A Exportin-T; karyopherin 74.7 69 0.0023 36.5 17.1 252 189-472 21-304 (980)
110 3l9t_A Putative uncharacterize 70.7 70 0.0024 30.0 15.8 141 316-486 74-219 (240)
111 3a6p_A Exportin-5; exportin-5, 68.4 1.8E+02 0.0062 33.8 19.9 229 218-473 46-330 (1204)
112 4ffb_C Protein STU2; tubulin f 67.5 82 0.0028 29.5 13.8 150 264-430 58-212 (278)
113 3m1i_C Exportin-1; heat repeat 66.6 24 0.00084 40.4 11.1 98 326-430 466-569 (1049)
114 1upk_A MO25 protein; transfera 65.9 1.1E+02 0.0037 30.3 19.7 223 169-411 74-309 (341)
115 3gjx_A Exportin-1; transport, 58.4 59 0.002 37.5 12.1 99 370-477 491-598 (1073)
116 4ffb_C Protein STU2; tubulin f 57.8 95 0.0033 29.0 11.9 138 141-289 67-211 (278)
117 1upk_A MO25 protein; transfera 53.2 1.8E+02 0.0061 28.7 19.7 170 305-485 71-248 (341)
118 3gjx_A Exportin-1; transport, 43.1 28 0.00096 40.1 6.2 101 327-432 493-597 (1073)
119 4dvg_B Diaphanous protein; cyt 36.9 2.4E+02 0.008 25.4 10.9 177 315-495 69-276 (353)
120 3gae_A Protein DOA1; UFD3, CDC 35.3 57 0.0019 30.8 6.1 106 371-479 103-222 (253)
121 1lsh_A Lipovitellin (LV-1N, LV 34.6 5.6E+02 0.019 29.1 22.5 128 266-432 445-578 (1056)
122 3m1i_C Exportin-1; heat repeat 30.1 6.4E+02 0.022 28.4 19.9 184 312-511 48-259 (1049)
123 4e2i_2 DNA polymerase alpha su 29.6 42 0.0014 25.7 3.2 31 71-101 6-37 (78)
124 3oc3_A Helicase MOT1, MOT1; re 27.4 46 0.0016 35.6 4.1 141 261-429 263-403 (800)
125 2k5j_A Uncharacterized protein 26.9 56 0.0019 24.9 3.6 23 73-95 24-46 (80)
126 1t1h_A Gspef-atpub14, armadill 25.5 22 0.00076 26.4 1.1 22 80-101 56-78 (78)
127 3kxe_C Antitoxin protein PARD- 24.5 57 0.002 25.5 3.3 34 66-99 11-45 (88)
128 1x5b_A Signal transducing adap 24.4 1.7E+02 0.0057 25.5 6.7 72 121-202 51-122 (163)
129 3pst_A Protein DOA1; protein d 23.8 5.4E+02 0.019 26.0 11.2 108 371-481 275-396 (425)
130 1y66_A Engrailed homeodomain; 23.1 86 0.0029 20.8 3.3 24 63-95 21-44 (52)
131 3ldz_A STAM-1, signal transduc 22.8 2E+02 0.0067 24.2 6.7 72 121-203 41-112 (140)
132 2keb_A DNA polymerase subunit 21.6 73 0.0025 25.5 3.3 40 56-101 20-60 (101)
133 2v6z_M DNA polymerase epsilon 20.2 1.7E+02 0.0057 23.4 5.2 25 79-103 22-46 (99)
134 3ldz_A STAM-1, signal transduc 20.0 2.1E+02 0.0073 24.0 6.4 57 371-429 55-113 (140)
No 1
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=346.15 Aligned_cols=371 Identities=16% Similarity=0.170 Sum_probs=285.9
Q ss_pred CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhccc---------C
Q 010019 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC---------G 188 (520)
Q Consensus 118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~---------~ 188 (520)
++-.+.+..|.+.+.+ .|.++ ..+.|-.++. +++.|..++++|+||.||++|+..+. +
T Consensus 28 ~~~~~~~~~l~~~~~~-------~~~~~---~~~~ll~~~~---~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~ 94 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGT-------HDKDD---MSRTLLAMSS---SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRG 94 (458)
T ss_dssp ------------------------CCHH---HHHHHHHHHS---STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCC
T ss_pred CchHHHHHHHHHHhcC-------CCHHH---HHHHHHHHHc---CCcHHHHHHHCCCHHHHHHHHhcccccccccccccC
Confidence 4445567788888876 55554 4444444454 67789999999999999999997543 4
Q ss_pred cHHHHHHHHHHHHHhhcccccc-hhHHhcCCc----------HHHHHHHhcCCCCh------------HHHHHHHHHHHH
Q 010019 189 SKRVLDSCLKTMALLVHDVQST-ETFRTGGGP----------KLLVNILIDGNEDP------------EILNSGFAVVAA 245 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~-~~i~~~ggi----------~~Lv~lL~~~~~~~------------~v~~~a~~~L~~ 245 (520)
+++++.+|+++|+++..+++.. ...++.+.+ +.+++++.+.+.+. +.++.|+|+|.+
T Consensus 95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n 174 (458)
T 3nmz_A 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence 5788888888888888777543 333445555 55667776653111 234589999999
Q ss_pred HhcCChhhHHHHHhcCCHHHHHHHHhcC-----------ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CC
Q 010019 246 SATGNEVVKESYMELKIDELILEILSRQ-----------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GI 313 (520)
Q Consensus 246 ~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-----------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~ 313 (520)
++. ++++|+.+++.|++++|+.+|... ..+++++|+|+|+|||.+++.. ...+.+. |+
T Consensus 175 ls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~---------k~~i~~~~Ga 244 (458)
T 3nmz_A 175 LSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN---------KATLCSMKGC 244 (458)
T ss_dssp HTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH---------HHHHHHCHHH
T ss_pred hcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc---------HHHHHHcCCc
Confidence 954 689999999999999999999531 1267889999999999987532 1245444 55
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCc
Q 010019 314 ARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDS 390 (520)
Q Consensus 314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~ 390 (520)
||+|+.+|++ .+.+++..++|+|+||+. +++++..|++.|||++|+++|..+. +..+++.++++|+||+. +++
T Consensus 245 Ip~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~---~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 245 MRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC---SHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHccCCHH
Confidence 9999999986 467899999999999996 4689999999999999999876532 34899999999999997 889
Q ss_pred hHHHHH-hcCCHHHHHHHHhccCCCH--HHHHHHHHHHHHHhc---CCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019 391 NKSAII-ENGGMDKLIVVSARFSDDA--SVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (520)
Q Consensus 391 ~k~~Iv-~~g~l~~Lv~lL~~~~~~~--~v~~~a~~aL~nLa~---~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~ 464 (520)
++..|+ ..|+++.|+++|....+.. .++++|+|+|+||+. +++++++.++++|+++.|+++|+. ++..++++
T Consensus 321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~ 398 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSN 398 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC--CChHHHHH
Confidence 999998 7899999999998433221 589999999999997 799999999999999999999965 57889999
Q ss_pred HHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh-CcchHHHHHHHHHHcCCCC
Q 010019 465 SCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN-HEICKDAATDALRDLGLDD 517 (520)
Q Consensus 465 A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~-h~~~~~~a~aALr~Lg~~~ 517 (520)
|+|+|+||+.++++++..+++.|+.+.|..++.. ++.++..|..||++|.-++
T Consensus 399 A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999988899999999999999999888754 3567899999999997654
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.8e-38 Score=342.95 Aligned_cols=389 Identities=12% Similarity=0.130 Sum_probs=307.7
Q ss_pred HhhcCcccCCccccCCCCCC----CCCCcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010019 95 LSLQGVDLSGIVKCVPGESS----LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVAT 170 (520)
Q Consensus 95 f~~qgvdls~i~~~~~~~~~----~~~~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~ 170 (520)
++.|..+.+++..+.+.... ........+++.|+..+.| +|.+.+.+|+..+|++.+. +..+.+..++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s-------~d~~~q~~a~~~~rklls~-e~~ppi~~ii 97 (510)
T 3ul1_B 26 FERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINS-------NNLESQLQATQAARKLLSR-EKQPPIDNII 97 (510)
T ss_dssp ---------------------------CCSSCCHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTC-SSCCCHHHHH
T ss_pred HHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 56666666655443222110 0111222358899999988 8999999999999998876 3455688899
Q ss_pred hcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010019 171 KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG 249 (520)
Q Consensus 171 ~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~ 249 (520)
++|+||+||++|++. +++.++..|.++|++++.+. +.+..+++.|++|.|+++|+ +++.++++.|+|+|++++.+
T Consensus 98 ~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HTTHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhC
Confidence 999999999999865 35677766667776665443 33678899999999999997 46799999999999999998
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhcCCh-----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC
Q 010019 250 NEVVKESYMELKIDELILEILSRQRN-----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG 324 (520)
Q Consensus 250 ~e~nr~~i~~~g~i~~Lv~lL~~~~~-----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~ 324 (520)
++.+|..+.+.|++++|+.+|.+... ..+++++|+|++++.+.++... .....|++|.|+.+|..
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~---------~~~~~~~lp~L~~LL~~- 243 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHH- 243 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCC---------HHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhH---------HHHHHhHHHHHHHHHhc-
Confidence 89999999999999999999987532 6788999999999998776553 22235789999999986
Q ss_pred CChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHH
Q 010019 325 LSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMD 402 (520)
Q Consensus 325 ~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~ 402 (520)
.+.+++.++||+|++|+. .++..+.+++.|+++.|+.+|... +..++..++++|++|+ +++.++..+++.|+++
T Consensus 244 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 244 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319 (510)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC----ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence 467899999999999995 556677889999999999999862 3589999999999997 5678888999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHH
Q 010019 403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRK 481 (520)
Q Consensus 403 ~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~ 481 (520)
.|+.+|+ +.++.+++.+||+|+||+.+++++++.+.+.|+++.++.+|.. ++..++++|+|+|+|++.. +++++.
T Consensus 320 ~L~~LL~--~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~Nl~~~~~~~~~~ 395 (510)
T 3ul1_B 320 VFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGTVEQIV 395 (510)
T ss_dssp GCC-CTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 9999998 6789999999999999999999999999999999999999975 6899999999999999864 789999
Q ss_pred HHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019 482 LLLSNGVEKLIRQAKENH-EICKDAATDALRDL 513 (520)
Q Consensus 482 ~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L 513 (520)
.+++.|+.+.|..++... +.....+..||+++
T Consensus 396 ~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999998888877443 34555666777654
No 3
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=6.5e-37 Score=332.16 Aligned_cols=361 Identities=12% Similarity=0.150 Sum_probs=306.3
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.++.+...+.| +|.+.+.+++..+|++.+. +..+....+++.|+||.||.+|++. +++.++..|.++|++
T Consensus 77 ~l~~lv~~l~s-------~d~~~q~~a~~~~rklLs~-~~~~~i~~ii~~G~ip~Lv~lL~~~--~~~~~q~~Aa~aL~n 146 (529)
T 3tpo_A 77 SVEDIVKGINS-------NNLESQLQATQAARKLLSR-EKQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN 146 (529)
T ss_dssp CHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTS-SSCCCHHHHHHTTHHHHHHHHHTCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcC-CCCchHHHHHHCCCHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 47788888887 8899999999999998765 2556688899999999999999865 367777777777777
Q ss_pred hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-----H
Q 010019 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D 276 (520)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-----~ 276 (520)
++.+. +.+..+++.|++|.|+.+|. +.+.+++..|+|+|++++..++.+|..+++.|++++|+.+|..... .
T Consensus 147 ia~~~~~~~~~vv~~Gaip~Lv~LL~--s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~ 224 (529)
T 3tpo_A 147 IASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 224 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH
Confidence 76544 23578889999999999997 4578999999999999999889999999999999999999986532 6
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCC
Q 010019 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGG 355 (520)
Q Consensus 277 ~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Gg 355 (520)
.+++++|+|++++.+.++... .....|++|.|+.+|.. .+++++.++||+|++|+. .++..+.+++.|+
T Consensus 225 ~~~~a~~~L~nl~~~~~~~~~---------~~~~~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~ 294 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGV 294 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTCCC---------HHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcccchhh---------HHHHhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccc
Confidence 788999999999998766553 22235789999999986 467899999999999995 5567788899999
Q ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (520)
Q Consensus 356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~ 434 (520)
++.|+.+|... +..++..++.+|+||+ +++..+..+++.|+++.|+.+|+ +.++.+++.|||+|+||+.++++
T Consensus 295 i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 295 VPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp HHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHhcCC----ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHH
Confidence 99999999862 3589999999999997 56788889999999999999998 67899999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-hChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHH
Q 010019 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRD 512 (520)
Q Consensus 435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~-~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~ 512 (520)
+...+++.|+++.++.+|.. ++..++++|+|+|.|++. .+++++..+++.|+.+.|..++... +.....+..||.+
T Consensus 369 ~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n 446 (529)
T 3tpo_A 369 QIQQVVNHGLVPFLVGVLSK--ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 446 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999975 688999999999999986 4789999999999998888877543 3445566777766
Q ss_pred c
Q 010019 513 L 513 (520)
Q Consensus 513 L 513 (520)
+
T Consensus 447 i 447 (529)
T 3tpo_A 447 I 447 (529)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-36 Score=337.54 Aligned_cols=365 Identities=13% Similarity=0.130 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHH-hcCcHHHHHHHHhhcccCcHHHHHHHHH
Q 010019 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLK 198 (520)
Q Consensus 120 ~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~-~~Gaip~Lv~lL~~~~~~~~~~~~~al~ 198 (520)
+...++.|+..+.+. ..|.+....++..|..++. ++..|..++ +.|+||.|+++|++. +..++..|++
T Consensus 375 i~~Lv~~l~~lL~~~-----~~d~~v~~~AveaLayLS~---~~~vk~~lv~d~g~Ip~LV~LL~s~---d~~i~~~al~ 443 (810)
T 3now_A 375 ALKLAEACRRFLIKP-----GKDKDIRRWAADGLAYLTL---DAECKEKLIEDKASIHALMDLARGG---NQSCLYGVVT 443 (810)
T ss_dssp HHHHHHHHHHHHHCS-----SCCSSHHHHHHHHHHHHTT---SHHHHHHHHHCHHHHHHHHHHHHTT---CGGGHHHHHH
T ss_pred HHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHHhC---CcHHHHHHHHccchHHHHHHHhCCC---ChHHHHHHHH
Confidence 445677888888771 1267788899999999998 566666666 589999999999974 6678888888
Q ss_pred HHHHhhccccc------------------------------c---hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHH
Q 010019 199 TMALLVHDVQS------------------------------T---ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAA 245 (520)
Q Consensus 199 ~La~l~~~~~~------------------------------~---~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~ 245 (520)
+|++++.+.+. + ..++++|++|.|+.+|++ +++++++.++|+|+|
T Consensus 444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~N 521 (810)
T 3now_A 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNA 521 (810)
T ss_dssp HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 88888865421 1 567789999999999984 579999999999999
Q ss_pred HhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC
Q 010019 246 SATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL 325 (520)
Q Consensus 246 ~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~ 325 (520)
++. ++++|..+++.|++++|+.+|++++...+++|+|+|.+|+...++...|+. .. ..|++|+|+.+|....
T Consensus 522 LA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~-----~~--~~~aIppLv~LL~~~~ 593 (810)
T 3now_A 522 VCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG-----QR--SLDVIRPLLNLLQQDC 593 (810)
T ss_dssp HHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT-----HH--HHHTHHHHHHTTSTTS
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc-----hh--hhcHHHHHHHHhCCCC
Confidence 985 577999999999999999999998778899999999999987665543321 01 1369999999997533
Q ss_pred ChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHh-cCCHHH
Q 010019 326 SSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIE-NGGMDK 403 (520)
Q Consensus 326 ~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~-~g~l~~ 403 (520)
+...+.+++++|+||+. ++++++.|++.||++.|+.+|.+.. ..++++|+++|+||+.+++.+..+++ .|+++.
T Consensus 594 ~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~----~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~ 669 (810)
T 3now_A 594 TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH----LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF 669 (810)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC----TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC----HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHH
Confidence 33345689999999995 4789999999999999999998632 26999999999999999888888885 789999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL 482 (520)
Q Consensus 404 Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~-~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~ 482 (520)
|+.+|. +++..+++.|||+|+||+.+++++++.+++ .|+++.|+++|.. ++.++|+.|+|+|.|++..++++...
T Consensus 670 Lv~LL~--s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s--~d~~vq~~A~~aL~NL~~~s~e~~~~ 745 (810)
T 3now_A 670 LALLCE--DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN--PSPAVQHRGIVIILNMINAGEEIAKK 745 (810)
T ss_dssp HHHGGG--CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhc--CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC--CCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999998 678999999999999999888999999999 8999999999954 78999999999999998888999999
Q ss_pred HHhCCHHHHHHHHHHhC----cchHHHHHHHHHHc
Q 010019 483 LLSNGVEKLIRQAKENH----EICKDAATDALRDL 513 (520)
Q Consensus 483 l~~~G~~~lL~~~~~~h----~~~~~~a~aALr~L 513 (520)
+++.|+.+.|..++..+ +....+|..||..+
T Consensus 746 l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 746 LFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 99999999999887655 24556777887764
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=314.60 Aligned_cols=324 Identities=13% Similarity=0.125 Sum_probs=271.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcH----------HHHHHHHhhcc-cCc------H----HHHHHHHHH
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGV----------ELVCSICYKMR-CGS------K----RVLDSCLKT 199 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gai----------p~Lv~lL~~~~-~~~------~----~~~~~al~~ 199 (520)
++++.+.+|+..|.++... .++......+.|++ +.+++++++.+ .++ + ..+++|+++
T Consensus 94 ~~~~~~~~a~~al~ni~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~a 171 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHS--QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCV 171 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHH--SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHH
Confidence 4578999999999999997 67777777888888 77777787652 111 0 224578888
Q ss_pred HHHhhcccccchhHHhcCCcHHHHHHHhcC---------CCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHH
Q 010019 200 MALLVHDVQSTETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEI 269 (520)
Q Consensus 200 La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~l 269 (520)
|.++..+.+.|..+++.|++++|+++|... ..++.++..|+|+|.++|..++.+|..+... |+||.|+.+
T Consensus 172 L~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~L 251 (458)
T 3nmz_A 172 LMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251 (458)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHG
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHH
Confidence 888876666789999999999999999531 1346789999999999998887788888754 569999999
Q ss_pred HhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHH
Q 010019 270 LSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICK 348 (520)
Q Consensus 270 L~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~ 348 (520)
|++.+.+++..|+|+|++|+..++. ++...|++.|++|+|+++|....+..+++.++.+||||+. +++++.
T Consensus 252 L~s~~~~v~~~A~~aL~nLs~~~~~--------~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 252 LKSESEDLQQVIASVLRNLSWRADV--------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSCCH--------HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 9987779999999999999985321 1233677999999999987655567889999999999997 889999
Q ss_pred HHH-hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHH
Q 010019 349 SVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS 423 (520)
Q Consensus 349 ~i~-~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~ 423 (520)
.|+ ..|+++.|+.+|....+....++++.|+++|+||+ ++++++..|+++|+++.|+.+|+ +++..++++|+|
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~--~~~~~v~~~A~~ 401 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTIVSNACG 401 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS--CSCHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc--CCChHHHHHHHH
Confidence 998 89999999999986433211258999999999998 58999999999999999999998 668999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh
Q 010019 424 IITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (520)
Q Consensus 424 aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e 478 (520)
+|+||+.+++++++.+++.|+++.|+++|.. ++..+++.|+|+|+||+.++|+
T Consensus 402 aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 402 TLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHh
Confidence 9999998899999999999999999999953 6899999999999999887764
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.5e-34 Score=310.44 Aligned_cols=361 Identities=11% Similarity=0.084 Sum_probs=291.1
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..|...+.+ ++.+.+.+|+..|+.+|.. +.++|..+++.|+||+||++|++. +..++..|.++|.+
T Consensus 49 ~i~~LV~~L~s-------~~~~~q~~Aa~~L~~La~~--~~~~k~~V~~~G~Ip~LV~LL~s~---~~~vq~~Aa~AL~n 116 (584)
T 3l6x_A 49 ELPEVIAMLGF-------RLDAVKSNAAAYLQHLCYR--NDKVKTDVRKLKGIPVLVGLLDHP---KKEVHLGACGALKN 116 (584)
T ss_dssp CHHHHHHHTTC-------SCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHGGGCS---SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCC-------CCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCcHHHHHHHCCC---CHHHHHHHHHHHHH
Confidence 36677778777 6788899999999999987 899999999999999999999984 78899889999999
Q ss_pred hhcc--cccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhc--------
Q 010019 203 LVHD--VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-------- 272 (520)
Q Consensus 203 l~~~--~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~-------- 272 (520)
++.+ .+++..++++|||+.|+++|++. .+.++++.++++|.+++. ++.+|..|++ +++++|+++|..
T Consensus 117 La~~~~~~nk~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 117 ISFGRDQDNKIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HTSSSCHHHHHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC--
T ss_pred HHccCCHHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccc
Confidence 8863 46689999999999999999863 357899999999999976 7889999996 579999998721
Q ss_pred --------C--ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CCHHHHHHHHhcC-----CChhHHHHHHHH
Q 010019 273 --------Q--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAG-----LSSPSLISASIA 336 (520)
Q Consensus 273 --------~--~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~l~~Lv~lL~~~-----~~~~~~~~a~~a 336 (520)
+ +..++.+|+++|+||+.++++ +.+.|.+. |++++|+.+|+.. .+...+++++++
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~---------~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~a 264 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSE---------ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCL 264 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHH---------HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHH---------HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence 1 238889999999999986532 12366765 5568999999853 345688999999
Q ss_pred HHHhccChhh--------------------------HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC-
Q 010019 337 LKAVAVNDEI--------------------------CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD- 389 (520)
Q Consensus 337 L~~La~~~e~--------------------------~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~- 389 (520)
|+||+..-+. ...+.+.++++.|+.+|..+. +..++++|+++|+||+.+.
T Consensus 265 L~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~---~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK---TPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHSSCS
T ss_pred HHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC---CHHHHHHHHHHHHHHHcCCc
Confidence 9999954210 111223344567888997642 3589999999999997442
Q ss_pred ----chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCC------CH
Q 010019 390 ----SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN------AQ 459 (520)
Q Consensus 390 ----~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~------~~ 459 (520)
.++..|.+.||+|.|+++|. ++++.+++.+||+|+||+. ++.++..| +.|+++.|+++|..... ..
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~--s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~ 417 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLT--NEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSE 417 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchH
Confidence 34456667899999999998 7789999999999999996 55666555 78999999999964311 46
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC---cchHHHHHHHHHHcC
Q 010019 460 QLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH---EICKDAATDALRDLG 514 (520)
Q Consensus 460 ~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h---~~~~~~a~aALr~Lg 514 (520)
.++..||++|.||++++++++..+++.|+.+.|..++..+ +....+|..+|++|-
T Consensus 418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 418 DTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998774 356777888888874
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.7e-34 Score=303.72 Aligned_cols=362 Identities=14% Similarity=0.146 Sum_probs=291.1
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l 203 (520)
+..|...+.+ ++.+.+..|+..|+++|.. ++..+..+++.|+||.|+++|++. ++.++..|.++|.++
T Consensus 4 l~~lv~~L~s-------~~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s~---~~~~~~~A~~aL~nL 71 (457)
T 1xm9_A 4 IPKAVQYLSS-------QDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSP---NQNVQQAAAGALRNL 71 (457)
T ss_dssp HHHHHHHHHS-------SCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-------CCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHH
Confidence 5667777777 6778899999999999986 777888999999999999999974 778888888888888
Q ss_pred hcc-cccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh--------cC-
Q 010019 204 VHD-VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS--------RQ- 273 (520)
Q Consensus 204 ~~~-~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~--------~~- 273 (520)
+.+ .+.+..++++||+|.|+++|+. +++.++++.++|+|.+++.. +.+|..+++ |++++|+++|. +.
T Consensus 72 a~~~~~~k~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 72 VFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence 765 4568889999999999999973 34789999999999999976 789999999 99999999993 22
Q ss_pred -------ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CCHHHHHHHHhcC-----CChhHHHHHHHHHHHh
Q 010019 274 -------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAG-----LSSPSLISASIALKAV 340 (520)
Q Consensus 274 -------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~l~~Lv~lL~~~-----~~~~~~~~a~~aL~~L 340 (520)
..+++++|+|+|+|||.++++ .+.+.+. |++++|+.+|+.+ .+..++.+++++|++|
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~~----------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSADAG----------RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTSHHH----------HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred chhcccccHHHHHHHHHHHHHHccCHHH----------HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 226777999999999986332 3366677 9999999999862 3445778889999998
Q ss_pred ccC---------------------------------------------------hhhHHHHHhcCChHHHHHHHhccCCC
Q 010019 341 AVN---------------------------------------------------DEICKSVAENGGIDALLRCIDDSGLQ 369 (520)
Q Consensus 341 a~~---------------------------------------------------~e~~~~i~~~Ggv~~Ll~lL~~~~~~ 369 (520)
+.. ++..+.+.+.|+++.|+.+|....
T Consensus 219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-- 296 (457)
T 1xm9_A 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-- 296 (457)
T ss_dssp TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC--
T ss_pred ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC--
Confidence 621 112234567788999999998742
Q ss_pred CcHHHHHHHHHHHHHhhCCC-ch-----HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019 370 GNKTVARICCSLLSKLAGSD-SN-----KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~-~~-----k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G 443 (520)
++.+++.|+++|+||+... .. +..|.++||+|.|+++|. +++..+++.|+|+|+||+. ++++...+ ..|
T Consensus 297 -~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~--~~~~~v~~~A~~aL~nls~-~~~~~~~i-~~~ 371 (457)
T 1xm9_A 297 -KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMSR-HPLLHRVM-GNQ 371 (457)
T ss_dssp -CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHT-SGGGHHHH-HHH
T ss_pred -CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh--CCCHhHHHHHHHHHHHHhc-CHHHHHHH-HHh
Confidence 3589999999999998543 32 233457899999999998 7789999999999999996 66665544 568
Q ss_pred cHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC--cchHHHHHHHHHHcCCCC
Q 010019 444 SGDLAIQAMLKFPN----AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH--EICKDAATDALRDLGLDD 517 (520)
Q Consensus 444 ~i~~lv~~L~~~~~----~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h--~~~~~~a~aALr~Lg~~~ 517 (520)
+++.|+++|..... +.+++..++++|.|+..+++++...+.+.|+.+.|..++... +.....|...|.++-.+-
T Consensus 372 ~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 99999999975322 257888999999999988999999999999999888887654 356777888888876544
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.8e-32 Score=296.29 Aligned_cols=361 Identities=12% Similarity=0.112 Sum_probs=305.9
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
..+..|...+.+ +|.+.+..|+..|+++++. ...+++..+++.|++|.|+++|++. +++.++..|+++|+
T Consensus 74 ~~l~~lv~~L~s-------~~~~~~~~A~~~L~~l~s~-~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~v~~~A~~~L~ 143 (528)
T 4b8j_A 74 ESLPAMIGGVYS-------DDNNLQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVQFLTRE--DFPQLQFEAAWALT 143 (528)
T ss_dssp -CHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTC-SSSCCHHHHHHTTCHHHHHHHHTCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CCHHHHHHHHHHHHHHhcC-CCCchHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 347778888876 6888899999999999875 2336788899999999999999874 23788888888888
Q ss_pred Hhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-ChHHHH
Q 010019 202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQ 279 (520)
Q Consensus 202 ~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-~~~~~~ 279 (520)
+++.+. +.+..+++.|+++.|+.+|.+ .+.+++..++|+|++++..++.+|..+.+.|+++.|+.+|... +..++.
T Consensus 144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 144 NIASGTSENTKVVIDHGAVPIFVKLLGS--SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred HHhCCCHHHHHHHHhCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence 887653 346778889999999999985 5789999999999999988888999999999999999999544 458889
Q ss_pred HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHH
Q 010019 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDA 358 (520)
Q Consensus 280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~ 358 (520)
.++|+|++|+....... .....|+++.|+.+|.. .++.++..++++|++|+.. ++..+.+++.|+++.
T Consensus 222 ~a~~~L~~L~~~~~~~~----------~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPS----------FEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp HHHHHHHHHHCSSSCCC----------HHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCCc----------HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 99999999998753322 33457999999999975 4688999999999999954 455678899999999
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCC-CHHHHHHHHHHHHHHhcCCHHHH
Q 010019 359 LLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSD-DASVLQEVMSIITVLSLRSPENA 436 (520)
Q Consensus 359 Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~-~~~v~~~a~~aL~nLa~~~~~~~ 436 (520)
|+.+|... +..++..|+++|++|+. ++..+..+++.|+++.|+.+|. +. ++.+++.|||+|.||+.++++..
T Consensus 291 Lv~lL~~~----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~A~~~L~nl~~~~~~~~ 364 (528)
T 4b8j_A 291 LVELLLHP----SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT--QNLKKSIKKEACWTISNITAGNKDQI 364 (528)
T ss_dssp HHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCC----ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc--CCCcHHHHHHHHHHHHHHHCCCHHHH
Confidence 99999863 25899999999999985 6677888999999999999998 55 89999999999999999899999
Q ss_pred HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019 437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDL 513 (520)
Q Consensus 437 ~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L 513 (520)
..+++.|+++.|+.+|.. +++.+++.|+|+|.|++.. +++++..+++.|+.+.|..++... +.....+..+|.+|
T Consensus 365 ~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 365 QAVINAGIIGPLVNLLQT--AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp HHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999976 4889999999999999876 799999999999998888877553 34566677777765
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.6e-33 Score=305.36 Aligned_cols=350 Identities=12% Similarity=0.097 Sum_probs=280.8
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
+|..|+..+.+ ++.+.+..|+..|++++.. .+.++|..|+++|+||+|+.+|++. .+.+++..+..+|.+
T Consensus 91 ~Ip~LV~LL~s-------~~~~vq~~Aa~AL~nLa~~-~~~~nk~~I~~~GaIp~LV~LL~s~--~~~~~~e~aa~aL~n 160 (584)
T 3l6x_A 91 GIPVLVGLLDH-------PKKEVHLGACGALKNISFG-RDQDNKIAIKNCDGVPALVRLLRKA--RDMDLTEVITGTLWN 160 (584)
T ss_dssp HHHHHHHGGGC-------SSHHHHHHHHHHHHHHTSS-SCHHHHHHHHHTTHHHHHHHHHHHC--CSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCC-------CCHHHHHHHHHHHHHHHcc-CCHHHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 68899999988 7889999999999999983 2589999999999999999999974 255666666666666
Q ss_pred hhcccccchhHHhcCCcHHHHHHHh----------------cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHH
Q 010019 203 LVHDVQSTETFRTGGGPKLLVNILI----------------DGNEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDEL 265 (520)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~----------------~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~ 265 (520)
|....+.+..++. +|++.|+++|. ++..+.+++..|.++|+|++..++++|+.+++. |+++.
T Consensus 161 LS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~ 239 (584)
T 3l6x_A 161 LSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDA 239 (584)
T ss_dssp HTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHH
T ss_pred HhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHH
Confidence 6555555777874 68999999872 123467999999999999998888889999986 56789
Q ss_pred HHHHHhcC------ChHHHHHHHHHHHHhcCCCCcchh----hh------------hhchHHHHHHHcCCHHHHHHHHhc
Q 010019 266 ILEILSRQ------RNDSIQSLYDAIRVLLTPDDDQVV----AS------------QVYGYARRFAKIGIARALVHSLHA 323 (520)
Q Consensus 266 Lv~lL~~~------~~~~~~~a~~aL~~Ls~~dd~~v~----~~------------~a~~~a~~i~~~g~l~~Lv~lL~~ 323 (520)
|+.+|++. +...+++|+++|+|||...+..++ +- ........+...+++++|+.+|+.
T Consensus 240 LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~ 319 (584)
T 3l6x_A 240 LIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319 (584)
T ss_dssp HHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence 99999862 348899999999999976321110 00 000111123334567889999987
Q ss_pred CCChhHHHHHHHHHHHhccCh-----hhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhc
Q 010019 324 GLSSPSLISASIALKAVAVND-----EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN 398 (520)
Q Consensus 324 ~~~~~~~~~a~~aL~~La~~~-----e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~ 398 (520)
+.+..+++.|++||+||+... .++..+.+.||++.|+++|... +..+++.++++|+||+.++.++..| ..
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~----~~~v~~~A~~aL~nLs~~~~~~~~I-~~ 394 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE----HERVVKAASGALRNLAVDARNKELI-GK 394 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS----CHHHHHHHHHHHHHHHTTCSCHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhCChhHHHHH-Hh
Confidence 667889999999999998542 3445666789999999999863 2489999999999999988888877 67
Q ss_pred CCHHHHHHHHhccCC------CHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 399 GGMDKLIVVSARFSD------DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 399 g~l~~Lv~lL~~~~~------~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
|++|.||++|..... +..++..+|++|.||+.+++++++.++++|+++.|+.+++.++..+.+++.|+|+|+||
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 999999999973211 47889999999999999999999999999999999999987555789999999999999
Q ss_pred hhhChhhHHHHHhCCHH
Q 010019 473 VARNPENRKLLLSNGVE 489 (520)
Q Consensus 473 ~~~~~e~~~~l~~~G~~ 489 (520)
+.+++++..+.+.|..
T Consensus 475 -~~~~elr~~~kk~G~~ 490 (584)
T 3l6x_A 475 -WGYKELRKPLEKEGWK 490 (584)
T ss_dssp -HTSHHHHHHHHTTTCC
T ss_pred -HcCHHHHHHHHHcCCC
Confidence 5689999999988764
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=6.9e-34 Score=292.64 Aligned_cols=278 Identities=14% Similarity=0.178 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcC---------CCChHHHHHHHHHHHHHhcCChhhHHHHHhc-
Q 010019 191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL- 260 (520)
Q Consensus 191 ~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~- 260 (520)
..++.|+++|..+..+.+.|..+++.||++.|+++|... ..+++++..|+|+|.++|..++.+|..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 446677888888877767789999999999999999631 1246899999999999998888899888755
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L 340 (520)
|+||.|+.+|++.+.++++.|+|+|++|+..++. ++...+++.|+||+|+++|.+..+.++++.++++|++|
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~--------~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADV--------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH--------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH--------HHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5599999999987779999999999999985321 12336779999999999876555678899999999999
Q ss_pred cc-ChhhHHHHH-hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019 341 AV-NDEICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFSDD 414 (520)
Q Consensus 341 a~-~~e~~~~i~-~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~ 414 (520)
+. +++++..|+ ..|+++.|+++|....+....++++.|+++|+||+ ++++++..++++|+++.|+++|+ +++
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~~~ 276 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHS 276 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--CSC
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--CCC
Confidence 97 778998988 79999999999986432211258999999999998 48999999999999999999998 678
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhH
Q 010019 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENR 480 (520)
Q Consensus 415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~ 480 (520)
..++++|+++|+||+.+++++++.+++.|+++.|+++|.. ++..++++|+|+|+||+..+++..
T Consensus 277 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998899999999999999999999954 688999999999999988776653
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.9e-32 Score=290.51 Aligned_cols=301 Identities=10% Similarity=0.090 Sum_probs=245.4
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc-chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (520)
.+|.|+.+|++. +.+++..|+.+|..++.+++. +..+++.|++|.|+++|++ ++++++..|+++|++++..+++
T Consensus 3 ~l~~lv~~L~s~---~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 3 TIPKAVQYLSSQ---DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSS---CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHH
Confidence 589999999985 667888899999988765543 6689999999999999984 6789999999999999988799
Q ss_pred hHHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh--------c
Q 010019 253 VKESYMELKIDELILEILS-RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH--------A 323 (520)
Q Consensus 253 nr~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~--------~ 323 (520)
+|..+++.|++++|+++|+ +++.+++..++|+|+||+.+++++. .+++ |++|+|+.+|. +
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~----------~i~~-g~i~~Lv~ll~~~~s~~~~~ 146 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE----------ELIA-DALPVLADRVIIPFSGWCDG 146 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH----------HHHH-HHHHHHHHHTTHHHHTCC--
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH----------HHHh-ccHHHHHHHHhccccccccC
Confidence 9999999999999999999 6566999999999999999876654 6778 99999999993 2
Q ss_pred C-------CChhHHHHHHHHHHHhccChhhHHHHHhc-CChHHHHHHHhcc-----CCCCcHHHHHHHHHHHHHhhC---
Q 010019 324 G-------LSSPSLISASIALKAVAVNDEICKSVAEN-GGIDALLRCIDDS-----GLQGNKTVARICCSLLSKLAG--- 387 (520)
Q Consensus 324 ~-------~~~~~~~~a~~aL~~La~~~e~~~~i~~~-Ggv~~Ll~lL~~~-----~~~~~~~v~~~al~aL~~La~--- 387 (520)
. .+..++++++|+|+||+.++++++.+++. |+++.|+.+|... .+. .+++.|+.+|++|+.
T Consensus 147 ~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~---~~~e~a~~~L~nLs~~~~ 223 (457)
T 1xm9_A 147 NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD---KSVENCMCVLHNLSYRLD 223 (457)
T ss_dssp -------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC---TTHHHHHHHHHHHTTTHH
T ss_pred ccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCch---HHHHHHHHHHHhcccchh
Confidence 1 23567789999999999889999999998 9999999999852 222 578899999999862
Q ss_pred ------------------------------------------------CCchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019 388 ------------------------------------------------SDSNKSAIIENGGMDKLIVVSARFSDDASVLQ 419 (520)
Q Consensus 388 ------------------------------------------------~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~ 419 (520)
++...+.+.+.|+++.|+.+|.. ++++.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~~~~e 302 (457)
T 1xm9_A 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLE 302 (457)
T ss_dssp HHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHH
T ss_pred ccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh-cCCHHHHH
Confidence 12233456677889999999974 56799999
Q ss_pred HHHHHHHHHhcCCHH----HHHHHH-hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHH
Q 010019 420 EVMSIITVLSLRSPE----NAARAM-EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQ 494 (520)
Q Consensus 420 ~a~~aL~nLa~~~~~----~~~~i~-~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~ 494 (520)
.|+|+|+|||.++.. ..+.++ ++|+++.|+++|.. ++..++++|||+|+||+ .+++++..+.+.+ .+.|..
T Consensus 303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~--~~~~v~~~A~~aL~nls-~~~~~~~~i~~~~-i~~Lv~ 378 (457)
T 1xm9_A 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS--GNSDVVRSGASLLSNMS-RHPLLHRVMGNQV-FPEVTR 378 (457)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC--SCHHHHHHHHHHHHHHH-TSGGGHHHHHHHT-HHHHHH
T ss_pred HHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC--CCHhHHHHHHHHHHHHh-cCHHHHHHHHHhh-hHHHHH
Confidence 999999999986543 223344 68999999999954 68999999999999995 5677777666544 444445
Q ss_pred HHHh
Q 010019 495 AKEN 498 (520)
Q Consensus 495 ~~~~ 498 (520)
.+..
T Consensus 379 lL~~ 382 (457)
T 1xm9_A 379 LLTS 382 (457)
T ss_dssp TTTS
T ss_pred hccC
Confidence 5543
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=6.6e-31 Score=284.48 Aligned_cols=361 Identities=13% Similarity=0.144 Sum_probs=305.4
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..|...+.+ ++.+.+..|+..|+++++. .+.+++..+++.|++|.|+++|++. .+..++..|+++|+.
T Consensus 88 ~i~~lv~~L~s-------~~~~~~~~A~~~L~~ll~~-~~~~~~~~~~~~g~i~~Lv~~L~~~--~~~~v~~~A~~~L~~ 157 (530)
T 1wa5_B 88 ELPQMTQQLNS-------DDMQEQLSATVKFRQILSR-EHRPPIDVVIQAGVVPRLVEFMREN--QPEMLQLEAAWALTN 157 (530)
T ss_dssp CHHHHHHHHSC-------SSHHHHHHHHHHHHHHTCC-SSSCSHHHHHHTTCHHHHHHTTSTT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CCHHHHHHHHHHHHHHhCC-CCCccHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 36677777776 6788899999999999875 2355677888999999999999874 267888888888888
Q ss_pred hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (520)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a 281 (520)
++.+. +.+..++..|+++.|+++|++ .+.+++..|+|+|++++..++.++..+...|+++.|+.+|.+.+.+++..|
T Consensus 158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 235 (530)
T 1wa5_B 158 IASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHH
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHH
Confidence 87643 235677789999999999985 578999999999999998888899999999999999999998666899999
Q ss_pred HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHH
Q 010019 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALL 360 (520)
Q Consensus 282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll 360 (520)
+|+|++|+.++++... .....|+++.|+.+|.. .++.++..++++|++|+. .++.++.+++.|+++.|+
T Consensus 236 ~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp HHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCCCCc---------HHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 9999999987633321 34457899999999975 467899999999999995 567788899999999999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019 361 RCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439 (520)
Q Consensus 361 ~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i 439 (520)
.+|.+. +..++..|+++|++|+. ++.....+++.|+++.|+.+|. ++++.+++.|+++|.+|+..++++.+.+
T Consensus 306 ~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~ 379 (530)
T 1wa5_B 306 ELLSHE----STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAV 379 (530)
T ss_dssp HGGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHCCC----ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999852 35899999999999984 5677778889999999999998 5689999999999999999899999999
Q ss_pred HhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-Ch--hhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019 440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NP--ENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDL 513 (520)
Q Consensus 440 ~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~--e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L 513 (520)
++.|+++.|+.+|.. +++.+++.|+|+|.|++.. ++ +....+++.|+.+.|..++... +.....+..||.+|
T Consensus 380 ~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 380 IDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455 (530)
T ss_dssp HHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 999999999999976 5789999999999999875 45 8899999999998888877543 45666777777765
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-31 Score=295.77 Aligned_cols=369 Identities=15% Similarity=0.103 Sum_probs=293.9
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
++..|...+.+ .+...+.+|+..|...|. ++.+|..+.+.|+ |+|+.++++. +..++.||+.+|+.
T Consensus 291 ~v~~li~Ll~s-------~~~~~q~~A~~al~~aa~---~~~~R~~I~~~gv-~~L~~Ll~s~---~~~vr~~Al~~L~k 356 (810)
T 3now_A 291 ILQMILAMATT-------DDELQQRVACECLIAASS---KKDKAKALCEQGV-DILKRLYHSK---NDGIRVRALVGLCK 356 (810)
T ss_dssp HHHHHHHHHHS-------SCHHHHHHHHHHHHHHTT---SHHHHHTTHHHHH-HHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCC-------CCHHHHHHHHHHHHHHcC---CcHHHHHHHHcCc-HHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 57788888887 677788899999999887 7889999999986 9999999864 56788899999988
Q ss_pred hhccc--ccchhHHhcCCc----HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH-hcCCHHHHHHHHhcCCh
Q 010019 203 LVHDV--QSTETFRTGGGP----KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRN 275 (520)
Q Consensus 203 l~~~~--~~~~~i~~~ggi----~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~-~~g~i~~Lv~lL~~~~~ 275 (520)
+.... +.....+..|++ +.++++|.+...+.+++.+++|+|++++.+ .+.|..++ +.|++|.|+++|++.+.
T Consensus 357 l~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~ 435 (810)
T 3now_A 357 LGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQ 435 (810)
T ss_dssp HHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred hccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCCh
Confidence 86321 222244445654 456667775444788999999999999764 56777777 57999999999998766
Q ss_pred HHHHHHHHHHHHhcCCCCcc------h---hhhh--------------hchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019 276 DSIQSLYDAIRVLLTPDDDQ------V---VASQ--------------VYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (520)
Q Consensus 276 ~~~~~a~~aL~~Ls~~dd~~------v---~~~~--------------a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~ 332 (520)
.++..|.++|.||+.+.+.+ . .|+. ..++.+.+++.|++|+|+.+|++ +++.+++.
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~ 514 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQEL 514 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHH
Confidence 88889999999999865421 0 0110 01123678899999999999987 46889999
Q ss_pred HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHH---HhcCCHHHHHHHHh
Q 010019 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI---IENGGMDKLIVVSA 409 (520)
Q Consensus 333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I---v~~g~l~~Lv~lL~ 409 (520)
++|+|+||+.+++++..+++.|++++|+.+|... +...++.|+++|.+|+.+.+....+ ...|++|+|+++|.
T Consensus 515 Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~----~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~ 590 (810)
T 3now_A 515 IARVLNAVCGLKELRGKVVQEGGVKALLRMALEG----TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQ 590 (810)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC----CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhC
Confidence 9999999999999999999999999999999864 2478999999999998543333322 11369999999997
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh-CCH
Q 010019 410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS-NGV 488 (520)
Q Consensus 410 ~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~-~G~ 488 (520)
+..+...+.+|+++|.||+..++++++.++++|+++.|+++|.. +++.+|+.|+++|+||+. +++.+..+++ .|+
T Consensus 591 -~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s--~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~ 666 (810)
T 3now_A 591 -QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME--DHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDR 666 (810)
T ss_dssp -TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--CCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSH
T ss_pred -CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCc
Confidence 22355666799999999999888999999999999999999974 467899999999999965 6778888886 699
Q ss_pred HHHHHHHHHhC-cchHHHHHHHHHHcCC
Q 010019 489 EKLIRQAKENH-EICKDAATDALRDLGL 515 (520)
Q Consensus 489 ~~lL~~~~~~h-~~~~~~a~aALr~Lg~ 515 (520)
.+.|..++... .+.+..|..||.+|..
T Consensus 667 l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 667 VKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 99988877554 3678889999999864
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.1e-32 Score=278.72 Aligned_cols=269 Identities=19% Similarity=0.211 Sum_probs=227.9
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-----------ChHHHHHHHHHHHHhcCCCCcchhhhhh
Q 010019 233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-----------RNDSIQSLYDAIRVLLTPDDDQVVASQV 301 (520)
Q Consensus 233 ~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-----------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a 301 (520)
...++.|+|+|.+++.+ +++|+.+++.|++++|+.+|.+. +.+++++|+|+|++||.+++.
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~------- 117 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA------- 117 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH-------
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH-------
Confidence 35556899999999875 78999999999999999999631 127888999999999987752
Q ss_pred chHHHHHHHc-CCHHHHHHHHhcCCChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019 302 YGYARRFAKI-GIARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (520)
Q Consensus 302 ~~~a~~i~~~-g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a 378 (520)
+.+.+... |+||+|+.+|++ .+++++..++|+|+||+. +++++..|++.|||++|+++|..+. +.++++.+
T Consensus 118 --~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~---~~~~~~~A 191 (354)
T 3nmw_A 118 --NKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSV 191 (354)
T ss_dssp --HHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHH
T ss_pred --HHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---CHHHHHHH
Confidence 12245455 459999999986 467899999999999996 4689999999999999999875432 24899999
Q ss_pred HHHHHHhhC-CCchHHHHH-hcCCHHHHHHHHhccCCC--HHHHHHHHHHHHHHhc---CCHHHHHHHHhcCcHHHHHHH
Q 010019 379 CSLLSKLAG-SDSNKSAII-ENGGMDKLIVVSARFSDD--ASVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQA 451 (520)
Q Consensus 379 l~aL~~La~-~~~~k~~Iv-~~g~l~~Lv~lL~~~~~~--~~v~~~a~~aL~nLa~---~~~~~~~~i~~~G~i~~lv~~ 451 (520)
+++|+||+. ++++|..|+ ..|++|.|+++|+...+. ..++++++++|+||+. .++++++.+.++|+++.|+++
T Consensus 192 ~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~l 271 (354)
T 3nmw_A 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271 (354)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHH
Confidence 999999997 778999998 789999999999743222 1699999999999997 799999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh-CcchHHHHHHHHHHcCCCC
Q 010019 452 MLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN-HEICKDAATDALRDLGLDD 517 (520)
Q Consensus 452 L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~-h~~~~~~a~aALr~Lg~~~ 517 (520)
|+. ++..++++|+|+|+||+.++++++..+++.|+.+.|..++.. ++..+..|..||++|...+
T Consensus 272 L~~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 272 LKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp TTC--SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HcC--CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 964 578899999999999987899999999999999999888754 3567889999999998654
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.98 E-value=1.8e-30 Score=280.36 Aligned_cols=360 Identities=13% Similarity=0.116 Sum_probs=295.8
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..|.+.+.+. .+++.+.+|+..|.++++. +++++..++++|+||.|+.+|++. +..++..|+++|.+
T Consensus 101 ~ip~LV~lL~~~------~~~~lq~~Aa~aL~nias~--~~e~~~~vv~~GaIp~Lv~lL~s~---~~~v~e~A~~aL~n 169 (510)
T 3ul1_B 101 LIPKFVSFLGKT------DCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASP---HAHISEQAVWALGN 169 (510)
T ss_dssp HHHHHHHHTTCT------TCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCC------CCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 477888888752 4577889999999999987 899999999999999999999884 77888888899988
Q ss_pred hhccc-ccchhHHhcCCcHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHH
Q 010019 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI 278 (520)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~ 278 (520)
++.+. ..+..+++.|+++.|+.+|..... ...++..++|++.++|.............|+++.|+.+|.+.+.+++
T Consensus 170 La~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 249 (510)
T 3ul1_B 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249 (510)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence 87665 336777899999999999976432 34677889999999987654444555556899999999998877999
Q ss_pred HHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChH
Q 010019 279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGID 357 (520)
Q Consensus 279 ~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~ 357 (520)
..|||+|++|+...+.+ .+.+.+.|+++.|+.+|+. ++..++..++++|++++ .+++++..+++.|+++
T Consensus 250 ~~A~~aL~~L~~~~~~~---------~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 250 ADSCWAISYLTDGPNER---------IEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319 (510)
T ss_dssp HHHHHHHHHHTSSCHHH---------HHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhhchhhh---------HHHHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence 99999999999766433 2356688999999999986 45778999999999998 5778889999999999
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-CCHHH
Q 010019 358 ALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-RSPEN 435 (520)
Q Consensus 358 ~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~-~~~~~ 435 (520)
.|+.+|... +..++..|+++|+||+ ++++.+..+++.|++|.|+.+|. +.+..++++|+|+|+||+. .++++
T Consensus 320 ~L~~LL~~~----~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~Aa~aL~Nl~~~~~~~~ 393 (510)
T 3ul1_B 320 VFPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS--KADFKTQKEAAWAITNYTSGGTVEQ 393 (510)
T ss_dssp GCC-CTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhcCC----CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHccCCHHH
Confidence 999999753 3589999999999998 56778888999999999999998 7799999999999999986 46788
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh------ChhhHHHHHhCCHHHHHHHHHHhCc--chHHHHH
Q 010019 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR------NPENRKLLLSNGVEKLIRQAKENHE--ICKDAAT 507 (520)
Q Consensus 436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~------~~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~ 507 (520)
+..+++.|+++.|+.+|.. .+++++..+.++|.|+... ....+..|.+.|+.+.|..+ ..|+ +....|.
T Consensus 394 ~~~L~~~g~i~~L~~LL~~--~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~ 470 (510)
T 3ul1_B 394 IVYLVHCGIIEPLMNLLSA--KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASL 470 (510)
T ss_dssp HHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHH
Confidence 9999999999999999954 6899999999999999631 12345566788999998665 4664 3344555
Q ss_pred HHHHH
Q 010019 508 DALRD 512 (520)
Q Consensus 508 aALr~ 512 (520)
..|..
T Consensus 471 ~iie~ 475 (510)
T 3ul1_B 471 NLIEK 475 (510)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.98 E-value=5.8e-30 Score=269.45 Aligned_cols=360 Identities=12% Similarity=0.114 Sum_probs=297.2
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhc-CcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~-Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
+..|.+.+.+ +|.+....|+..|+++++...++.. ..+.+. |++|.|+++|++. ++..++..|++.|+.
T Consensus 22 l~~l~~~l~s-------~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~--~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 22 TSDMIEMIFS-------KSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRK--ENCTLQFESAWVLTN 91 (450)
T ss_dssp CHHHHHHHHS-------SCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence 5566667766 6788889999999998653113333 445666 9999999999874 267888888888888
Q ss_pred hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhc-CChHHHHH
Q 010019 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQS 280 (520)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~-~~~~~~~~ 280 (520)
+..+. +.+..+++.|+++.|+++|++ ++++++..++++|++++...+.+|..+++.|+++.|+.+|++ .+.+++..
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~ 169 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH
Confidence 87543 334567788999999999984 578999999999999998888899999999999999999996 35588999
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHH
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL 359 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~L 359 (520)
++|+|++|+.++++.... .+. .+++|.|+.+|+. .+..++..++|+|.+|+. .++.+..+.+.|+++.|
T Consensus 170 a~~~L~~l~~~~~~~~~~--------~~~-~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 239 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEF--------AKV-SPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239 (450)
T ss_dssp HHHHHHHHHCCSSSCCCG--------GGT-GGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHhCCCCCCCCH--------HHH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence 999999999865322211 122 6899999999985 467899999999999995 56788889999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 010019 360 LRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438 (520)
Q Consensus 360 l~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~ 438 (520)
+.+|.+ .+..++..++++|++|+.. ++.+..+++.|+++.|+.+|. ++++.+++.++++|.+|+.+++++.+.
T Consensus 240 ~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~vr~~a~~~L~~l~~~~~~~~~~ 313 (450)
T 2jdq_A 240 VELLMH----NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS--SPKESIKKEACWTISNITAGNRAQIQT 313 (450)
T ss_dssp HHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHCC----CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999974 2358999999999999965 455667889999999999998 568999999999999999989999999
Q ss_pred HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019 439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDL 513 (520)
Q Consensus 439 i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L 513 (520)
+++.|+++.++++|.. +++.+++.|||+|.|++.+ +++....+++.|+.+.|..++... +..+..|..||.+|
T Consensus 314 ~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 388 (450)
T 2jdq_A 314 VIDANIFPALISILQT--AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388 (450)
T ss_dssp HHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999986 5789999999999999876 788899999989888888877543 45677777787765
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.98 E-value=2.4e-30 Score=278.25 Aligned_cols=362 Identities=19% Similarity=0.190 Sum_probs=286.6
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..|...+.++ .|.+....++..|++++. +++++..+.+.|++|.|+++|++. ++.++..|+.+|.+
T Consensus 60 ~i~~Lv~~L~~~------~~~~~~~~a~~~L~~ls~---~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~ 127 (529)
T 1jdh_A 60 MVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHN 127 (529)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcC------CCHHHHHHHHHHHHHHHc---CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 566677666541 467888999999999987 567999999999999999999874 67888888888888
Q ss_pred hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHH
Q 010019 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS 280 (520)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~ 280 (520)
++.+. ..+..+++.|+++.|+++|++ ++.+++..++.+|.+++..+++++..+.+.|+++.|+.+|+++.. .....
T Consensus 128 l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 205 (529)
T 1jdh_A 128 LLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 205 (529)
T ss_dssp HHHHCTTHHHHHHHHTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HhcCCcchHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHH
Confidence 87653 346677789999999999985 568888889999999998889999999999999999999998755 55566
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCH---------------------------------------HHHHHHH
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIA---------------------------------------RALVHSL 321 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l---------------------------------------~~Lv~lL 321 (520)
++.+|++|+..++++. .+.+.|++ |.|+.+|
T Consensus 206 a~~~L~~l~~~~~~~~----------~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll 275 (529)
T 1jdh_A 206 TSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275 (529)
T ss_dssp HHHHHHHHTTSTTHHH----------HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcccHH----------HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH
Confidence 8999999998766544 34444444 5555555
Q ss_pred hcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-Cc---hHHHHH
Q 010019 322 HAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS---NKSAII 396 (520)
Q Consensus 322 ~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~---~k~~Iv 396 (520)
++ .+++++..++++|++|+. ++++++.+.+.||++.|+++|....+ +..++..++++|++|+.. ++ .+..++
T Consensus 276 ~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 276 GS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD--REDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp TC-SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC--HHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 43 357788899999999995 46799999999999999999987433 248999999999999865 33 467899
Q ss_pred hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Q 010019 397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN----- 471 (520)
Q Consensus 397 ~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~n----- 471 (520)
+.|+++.|+++|+. ..++.+++.++|+|+|++. +++++..+.+.|+++.++++|.. +++.++++|+|++.|
T Consensus 353 ~~~~i~~L~~lL~~-~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~n~~~~~ 428 (529)
T 1jdh_A 353 LHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQQQFVE 428 (529)
T ss_dssp HTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHHH--HHHHHC-----------CBT
T ss_pred HcCChhHHHHHhcc-ccchHHHHHHHHHHHHHhc-ChhhhHHHHHcCCHHHHHHHHHH--HhHHHHHHHhcccCchhhhc
Confidence 99999999999973 3347999999999999996 66778899999999999999975 567888888887766
Q ss_pred -----------------HhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcCCC
Q 010019 472 -----------------LVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLGLD 516 (520)
Q Consensus 472 -----------------L~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg~~ 516 (520)
| ..+++++..+.+.|+.+.|..++... +..+..|..||.+|+.+
T Consensus 429 ~~~~~~i~~~~~~al~~L-~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 429 GVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp TBCHHHHHHHHHHHHHHH-TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHHH-hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 5 34678888999998888887776443 45677889999998754
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.98 E-value=3e-30 Score=279.75 Aligned_cols=359 Identities=12% Similarity=0.102 Sum_probs=295.4
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..|...+.++ .+.+.+.+|+..|.++++. +..++..++++|+||.|+.+|++. +..++..|+++|++
T Consensus 120 ~ip~Lv~lL~~~------~~~~~q~~Aa~aL~nia~~--~~~~~~~vv~~Gaip~Lv~LL~s~---~~~v~e~A~~aL~n 188 (529)
T 3tpo_A 120 LIPKFVSFLGKT------DCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASP---HAHISEQAVWALGN 188 (529)
T ss_dssp HHHHHHHHHTCT------TCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCC------CCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 477888888652 5578889999999999997 888999999999999999999885 77888888888888
Q ss_pred hhccc-ccchhHHhcCCcHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHH
Q 010019 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI 278 (520)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~ 278 (520)
++.+. ..+..+++.|+++.|+.+|..... ...++..++|++.++|...+.........|++|.|+.+|.+.+.+++
T Consensus 189 La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 268 (529)
T 3tpo_A 189 IAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 268 (529)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHH
Confidence 87654 346778899999999999975432 34677889999999987655455555566899999999998877999
Q ss_pred HHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChH
Q 010019 279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGID 357 (520)
Q Consensus 279 ~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~ 357 (520)
..|||+|++|+...+.+ .+.+.+.|+++.|+.+|.+ ++..++..++.+|++|+ .+++.+..+++.|+++
T Consensus 269 ~~a~~aL~~l~~~~~~~---------~~~v~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 269 ADSCWAISYLTDGPNER---------IEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp HHHHHHHHHHHSSCHHH---------HHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHhhhhhhhh---------HHHHHhccchHHHHHHhcC-CChhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 99999999999866433 3356688999999999986 46778999999999998 5778899999999999
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-CCHHH
Q 010019 358 ALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-RSPEN 435 (520)
Q Consensus 358 ~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~-~~~~~ 435 (520)
.|+.+|... +..++..|+++|+||+. +++.+..+++.|++|.|+.+|. +++..++++|+|+|+||+. .++++
T Consensus 339 ~L~~LL~~~----~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nl~~~~~~~~ 412 (529)
T 3tpo_A 339 VFPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS--KADFKTQKAAAWAITNYTSGGTVEQ 412 (529)
T ss_dssp GHHHHTTCS----SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHcCC----CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999853 35899999999999985 6677888999999999999998 7789999999999999986 47889
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh------ChhhHHHHHhCCHHHHHHHHHHhCc--chHHHHH
Q 010019 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR------NPENRKLLLSNGVEKLIRQAKENHE--ICKDAAT 507 (520)
Q Consensus 436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~------~~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~ 507 (520)
...+++.|+++.|+.+|.. .+++++..+.++|.|+... ....+..|.+.|+.+.|..+ ..|+ +....|.
T Consensus 413 ~~~l~~~g~i~~L~~LL~~--~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~ 489 (529)
T 3tpo_A 413 IVYLVHCGIIEPLMNLLSA--KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASL 489 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHH
Confidence 9999999999999999954 6899999999999999631 12334556788988888665 4665 2334455
Q ss_pred HHHH
Q 010019 508 DALR 511 (520)
Q Consensus 508 aALr 511 (520)
..|.
T Consensus 490 ~iie 493 (529)
T 3tpo_A 490 NLIE 493 (529)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 19
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.98 E-value=2.3e-30 Score=278.45 Aligned_cols=364 Identities=16% Similarity=0.149 Sum_probs=307.2
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
++..|...+.+ +|......++..|.+++. +.+++..+.. .|++|.|+++|+++ .+..++..++.+|.
T Consensus 18 ~i~~Lv~lL~~-------~~~~v~~~A~~~L~~l~~---~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~ 85 (529)
T 1jdh_A 18 AIPELTKLLND-------EDQVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLH 85 (529)
T ss_dssp HHHHHHHHHTC-------SCHHHHHHHHHHHHHHHT---SHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred hHHHHHHHhCC-------CCHHHHHHHHHHHHHHHc---CCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 57778887776 678888999999999998 4567766665 49999999999864 36788888899998
Q ss_pred HhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (520)
Q Consensus 202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a 281 (520)
.+..+.+.+..+.+.|+++.|+++|++ ++++++..++++|.++|..++..+..+.+.|+++.|+++|++.+..+...+
T Consensus 86 ~ls~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 86 NLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred HHHcCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 887666667888999999999999974 468999999999999998877889999999999999999998766888888
Q ss_pred HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH
Q 010019 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR 361 (520)
Q Consensus 282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~ 361 (520)
+.+|.+|+..++ ++.+.+.+.|+++.|+.+|+++.+......++.+|++|+.+++++..+++.|+++.|+.
T Consensus 164 ~~~L~~la~~~~---------~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ 234 (529)
T 1jdh_A 164 TDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 234 (529)
T ss_dssp HHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHhCCH---------HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 999999998542 23347778899999999999876666778889999999999999999999999999999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019 362 CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441 (520)
Q Consensus 362 lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~ 441 (520)
++.+. +..++..++++|.+|+....... ...|+++.|+++|. ++++.+++.++++|++|+.++++++..+.+
T Consensus 235 ll~~~----~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 306 (529)
T 1jdh_A 235 HLTDP----SQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306 (529)
T ss_dssp TTTSS----CHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhCC----ChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99763 35899999999999996543322 22478999999997 779999999999999999988999999999
Q ss_pred cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh---hHHHHHhCCHHHHHHHHHHhCc--chHHHHHHHHHHcCCC
Q 010019 442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE---NRKLLLSNGVEKLIRQAKENHE--ICKDAATDALRDLGLD 516 (520)
Q Consensus 442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e---~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~aALr~Lg~~ 516 (520)
.|+++.++++|..+++++.++..|+++|+||+.++++ .+..+++.|+.+.|..++.... ..+..+..+|+++...
T Consensus 307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 9999999999987656689999999999999876554 4778899988888888775542 5677888999999865
Q ss_pred C
Q 010019 517 D 517 (520)
Q Consensus 517 ~ 517 (520)
+
T Consensus 387 ~ 387 (529)
T 1jdh_A 387 P 387 (529)
T ss_dssp G
T ss_pred h
Confidence 4
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=280.54 Aligned_cols=364 Identities=16% Similarity=0.143 Sum_probs=304.0
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
++..|...+.+ ++......++..|..++.. ..++..+.. .|+++.|+++|++. .+.+++..|+.+|.
T Consensus 15 ~i~~Lv~lL~~-------~~~~vr~~A~~~L~~La~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~ 82 (644)
T 2z6h_A 15 AIPELTKLLND-------EDQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLH 82 (644)
T ss_dssp THHHHHHHHTC-------SCHHHHHHHHHHHHHHHTS---TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC-------CCHHHHHHHHHHHHHHHCC---ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 46677777766 6788889999999999984 456766665 49999999999864 36788888899998
Q ss_pred HhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (520)
Q Consensus 202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a 281 (520)
.++.+.+.+..+.+.|+++.|+++|++ ++++++..++++|.+++..++..+..+++.|+++.|+++|++.+..++..+
T Consensus 83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a 160 (644)
T 2z6h_A 83 NLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160 (644)
T ss_dssp HHTTSHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred HHhcChhhHHHHHHcCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence 887666667888899999999999974 468999999999999998777888899999999999999998766777778
Q ss_pred HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH
Q 010019 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR 361 (520)
Q Consensus 282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~ 361 (520)
+.+|++|+..++ ++...+.+.|+++.|+.+|++......+..++.+|++|+.+++++..+++.|+++.|+.
T Consensus 161 ~~~L~~La~~~~---------~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ 231 (644)
T 2z6h_A 161 TDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 231 (644)
T ss_dssp HHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHhcCc---------HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 889999997432 22347778899999999999876566788999999999999999999999999999999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019 362 CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441 (520)
Q Consensus 362 lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~ 441 (520)
++... +..++..++++|++|+...... ....|+++.|+++|+ ++++.+++.++++|++|+.+++++++.+.+
T Consensus 232 ll~~~----~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~--~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~ 303 (644)
T 2z6h_A 232 HLTDP----SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQ 303 (644)
T ss_dssp TTTCS----CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcC----CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99763 3589999999999998543221 122378999999998 678999999999999999988999999999
Q ss_pred cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh---hHHHHHhCCHHHHHHHHHHhC--cchHHHHHHHHHHcCCC
Q 010019 442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE---NRKLLLSNGVEKLIRQAKENH--EICKDAATDALRDLGLD 516 (520)
Q Consensus 442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e---~~~~l~~~G~~~lL~~~~~~h--~~~~~~a~aALr~Lg~~ 516 (520)
.|+++.|+++|..+++...++..|+++|+||+.++++ .+..+++.|+.+.|..++... +.....|..+|++|...
T Consensus 304 ~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 304 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 9999999999987555589999999999999876553 456688899998888887653 25677889999999865
Q ss_pred C
Q 010019 517 D 517 (520)
Q Consensus 517 ~ 517 (520)
+
T Consensus 384 ~ 384 (644)
T 2z6h_A 384 P 384 (644)
T ss_dssp G
T ss_pred H
Confidence 4
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=1.9e-28 Score=264.80 Aligned_cols=362 Identities=14% Similarity=0.162 Sum_probs=300.5
Q ss_pred HHHHHHHHhhcCCCCCChhh-HHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDED-LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d-~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
.+..|...+.+ ++ .+.+..|+..|..++.. ++.++..+++.|++|.|+.+|++. +..++..|+++|+
T Consensus 118 ~v~~Lv~lL~~-------~~~~~v~~~A~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~aL~ 185 (528)
T 4b8j_A 118 VVPRFVQFLTR-------EDFPQLQFEAAWALTNIASG--TSENTKVVIDHGAVPIFVKLLGSS---SDDVREQAVWALG 185 (528)
T ss_dssp CHHHHHHHHTC-------TTCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHH
T ss_pred CHHHHHHHhCC-------CCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhCCcHHHHHHHhcCC---CHHHHHHHHHHHH
Confidence 47778888776 44 78888999999999996 799999999999999999999874 7788888888888
Q ss_pred Hhhcccc-cchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHH
Q 010019 202 LLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (520)
Q Consensus 202 ~l~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~ 280 (520)
+++.+.+ .+..+...|+++.|+.+|.. ..+..++..++|+|.++|...+ ........|+++.|+.+|.+.+.+++..
T Consensus 186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~-~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 263 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLANGALLPLLAQLNE-HTKLSMLRNATWTLSNFCRGKP-QPSFEQTRPALPALARLIHSNDEEVLTD 263 (528)
T ss_dssp HHHHTCHHHHHHHHHTTCHHHHHHTCCT-TCCHHHHHHHHHHHHHHHCSSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHhCCChhhHHHHHHCCcHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8876542 36677888999999999953 3578999999999999997653 3344456899999999998877799999
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHH
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL 359 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~L 359 (520)
++++|.+|+...+.+. +.+.+.|+++.|+.+|... +..++..++++|++|+. +++..+.+++.|+++.|
T Consensus 264 a~~aL~~l~~~~~~~~---------~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L 333 (528)
T 4b8j_A 264 ACWALSYLSDGTNDKI---------QAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCL 333 (528)
T ss_dssp HHHHHHHHTSSCHHHH---------HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHcCCHHHH---------HHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHH
Confidence 9999999997654332 3667889999999999864 57789999999999995 67788889999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHHH
Q 010019 360 LRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAA 437 (520)
Q Consensus 360 l~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~~ 437 (520)
+.+|.... +..++..|+++|+||+. +++....+++.|+++.|+.+|. ..++.+++.|+++|.+|+.. ++++..
T Consensus 334 ~~lL~~~~---~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~ 408 (528)
T 4b8j_A 334 LSLLTQNL---KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ--TAEFDIKKEAAWAISNATSGGSHDQIK 408 (528)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHcCCC---cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99998631 35899999999999985 5667778899999999999998 56899999999999999986 789999
Q ss_pred HHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh-----------hHHHHHhCCHHHHHHHHHHhCc--chHH
Q 010019 438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE-----------NRKLLLSNGVEKLIRQAKENHE--ICKD 504 (520)
Q Consensus 438 ~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e-----------~~~~l~~~G~~~lL~~~~~~h~--~~~~ 504 (520)
.+++.|+++.++.+|.. .++.++..|+++|.||....+. ....+.+.|+.+.|..++ .|+ +...
T Consensus 409 ~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~v~~ 485 (528)
T 4b8j_A 409 YLVSEGCIKPLCDLLIC--PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHDNNEIYE 485 (528)
T ss_dssp HHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCSSHHHHH
T ss_pred HHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCCCHHHHH
Confidence 99999999999999965 6889999999999999754333 577788889988887764 554 4456
Q ss_pred HHHHHHHHcCCC
Q 010019 505 AATDALRDLGLD 516 (520)
Q Consensus 505 ~a~aALr~Lg~~ 516 (520)
.|...|..+--.
T Consensus 486 ~a~~il~~~~~~ 497 (528)
T 4b8j_A 486 KAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHCCC
Confidence 677777766433
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.7e-28 Score=272.11 Aligned_cols=364 Identities=17% Similarity=0.175 Sum_probs=293.4
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
..+..|...+.++ .+.+.+..++..|+.++. +.+++..+.+.|++|.|+++|++. +..++..|+.+|.
T Consensus 56 ~~i~~Lv~~L~~~------~~~~~~~~A~~~L~~Ls~---~~~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~ 123 (644)
T 2z6h_A 56 QMVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLH 123 (644)
T ss_dssp HHHHHHHHHHHSC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHTTTHHHHHHHHTTCS---SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcC------CCHHHHHHHHHHHHHHhc---ChhhHHHHHHcCCHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 3566777777652 467888999999999887 566999999999999999999874 6788888888888
Q ss_pred Hhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHH
Q 010019 202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQ 279 (520)
Q Consensus 202 ~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~ 279 (520)
+++.+. +.+..+++.|+++.|+++|++. +.+++..++.+|.+++..++++|..+.+.|+++.|+.+|++... ..+.
T Consensus 124 nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 201 (644)
T 2z6h_A 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201 (644)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHhCcchhHHHHHHCCChHHHHHHHCcC--CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHH
Confidence 887553 3356777899999999999854 67888888899999998889999999999999999999998754 6677
Q ss_pred HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHH---------------------------------------HH
Q 010019 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALV---------------------------------------HS 320 (520)
Q Consensus 280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv---------------------------------------~l 320 (520)
.++.+|++|+...+++. .+.+.|+++.|+ .+
T Consensus 202 ~a~~~L~nLs~~~~~~~----------~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~l 271 (644)
T 2z6h_A 202 TTSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 271 (644)
T ss_dssp HHHHHHHHHTTCTTHHH----------HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHH----------HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHH
Confidence 89999999998766544 455555555554 44
Q ss_pred HhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-Cc---hHHHH
Q 010019 321 LHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS---NKSAI 395 (520)
Q Consensus 321 L~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~---~k~~I 395 (520)
|++ .+.+++..++++|++|+. ++++++.+.+.|+++.|+.+|....+. ..++..|+.+|++|+.. ++ .+..+
T Consensus 272 L~~-~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~--~~v~~~a~~aL~nL~~~~~~~~~~q~~v 348 (644)
T 2z6h_A 272 LGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLTSRHQEAEMAQNAV 348 (644)
T ss_dssp TTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCc--HHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 443 356788899999999995 468899999999999999999875332 48999999999999864 32 34568
Q ss_pred HhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC--------------------
Q 010019 396 IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF-------------------- 455 (520)
Q Consensus 396 v~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~-------------------- 455 (520)
++.|+++.|+++|+. ..++.+++.++|+|+||+. ++++++.+++.|+++.|+++|...
T Consensus 349 ~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nLa~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 349 RLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHTTHHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHccChHHHHHHhCc-cCchHHHHHHHHHHHHHcc-CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 889999999999973 3357999999999999997 567779999999999999999752
Q ss_pred CCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcCC
Q 010019 456 PNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLGL 515 (520)
Q Consensus 456 ~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg~ 515 (520)
..+..++..++.+|++|+ ++++++..+.+.|+.+.|..++... +..+..|..+|.+|+-
T Consensus 427 ~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp SCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHh-cCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 123556777888888884 6789999999998888888877543 4567778888888764
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=3.3e-28 Score=256.01 Aligned_cols=360 Identities=13% Similarity=0.118 Sum_probs=293.1
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..|...+.+. .+.+.+..++..|..++.. +++++..+.+.|++|.|+.+|++. ++.++..|+++|..
T Consensus 65 ~i~~L~~~L~~~------~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~---~~~vr~~a~~~L~~ 133 (450)
T 2jdq_A 65 VVARFVEFLKRK------ENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSE---FEDVQEQAVWALGN 133 (450)
T ss_dssp HHHHHHHHHTCT------TCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCC------CCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 466777777661 2678889999999999986 778888888999999999999874 77888888888888
Q ss_pred hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCCHHHHHHHHhcCChHHHHH
Q 010019 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQS 280 (520)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~-e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~ 280 (520)
+..+. ..+..+++.|+++.|+++|.+ ..+.+++..++++|++++... +..+..++ .|+++.|+.+|++.+..++..
T Consensus 134 l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~ 211 (450)
T 2jdq_A 134 IAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLAD 211 (450)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHH
T ss_pred HccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHH
Confidence 87654 235667788999999999973 357899999999999999654 33333333 789999999999877788899
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHH
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL 359 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~L 359 (520)
++|+|++|+..... ..+.+.+.|+++.|+.+|+. ++..++..++++|++|+. +++.++.+.+.|+++.|
T Consensus 212 a~~~L~~l~~~~~~---------~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 281 (450)
T 2jdq_A 212 ACWALSYLSDGPND---------KIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281 (450)
T ss_dssp HHHHHHHHTSSSHH---------HHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHCCCcH---------HHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHH
Confidence 99999999976432 23466688999999999984 467899999999999995 45667778899999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHHH
Q 010019 360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAA 437 (520)
Q Consensus 360 l~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~~ 437 (520)
+.+|.+. +..++..|+++|++|+ ++++....+++.|+++.|+.+|. .+++.+++.+|++|.+|+.+ ++++.+
T Consensus 282 ~~ll~~~----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 282 LHLLSSP----KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp HHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999862 3589999999999999 56778888999999999999998 56899999999999999976 788889
Q ss_pred HHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh-----------hHHHHHhCCHHHHHHHHHHhCc--chHH
Q 010019 438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE-----------NRKLLLSNGVEKLIRQAKENHE--ICKD 504 (520)
Q Consensus 438 ~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e-----------~~~~l~~~G~~~lL~~~~~~h~--~~~~ 504 (520)
.+++.|+++.++++|.. .++.+++.|+++|.+++...+. ....+.+.|+.+.|..++ .|+ ....
T Consensus 356 ~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~ 432 (450)
T 2jdq_A 356 YLVELGCIKPLCDLLTV--MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ-SHENQEIYQ 432 (450)
T ss_dssp HHHHHTCHHHHHHGGGS--SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHH-CHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHH-cCCCHHHHH
Confidence 89999999999999965 5789999999999999764332 345677777777776643 454 3455
Q ss_pred HHHHHHHHcC
Q 010019 505 AATDALRDLG 514 (520)
Q Consensus 505 ~a~aALr~Lg 514 (520)
.|..+|.++-
T Consensus 433 ~a~~~l~~~~ 442 (450)
T 2jdq_A 433 KAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
Confidence 6777777653
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=1.7e-28 Score=277.80 Aligned_cols=369 Identities=18% Similarity=0.152 Sum_probs=300.5
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
++..|...+.+ .+...+..|+..|..++. +..++..+.. .|+++.|+++|++. .+..++..|+.+|.
T Consensus 151 ~ip~Lv~lL~~-------~d~~vr~~A~~~L~~L~~---~~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~ 218 (780)
T 2z6g_A 151 AIPELTKLLND-------EDQVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLH 218 (780)
T ss_dssp HHHHHHHHHHC-------SCHHHHHHHHHHHHHHHT---SHHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCC-------CCHHHHHHHHHHHHHHhC---CChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 56677777765 677888899999999998 4556777775 48999999999864 37788888888888
Q ss_pred HhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (520)
Q Consensus 202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a 281 (520)
.+..+.+.+..+.+.|+++.|+++|++ .+..++..|+++|.++|..++..+..+++.|+++.|+++|++.+..++..+
T Consensus 219 ~Ls~~~~~~~~i~~~g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a 296 (780)
T 2z6g_A 219 NLSHHREGLLAIFKSGGIPALVNMLGS--PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 296 (780)
T ss_dssp HHHTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred HHhCCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 887665557788889999999999975 468999999999999998878889999999999999999998666788889
Q ss_pred HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH
Q 010019 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR 361 (520)
Q Consensus 282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~ 361 (520)
+.+|++|+..++ +....+.+.|+++.|+.+|+.+........++.+|++|+..++++..+++.|+++.|+.
T Consensus 297 ~~aL~~La~~~~---------e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~ 367 (780)
T 2z6g_A 297 TDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 367 (780)
T ss_dssp HHHHHHHHTTCH---------HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGG
T ss_pred HHHHHHHhcCCh---------HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHH
Confidence 999999997432 22336778899999999999865556677889999999998899999999999988877
Q ss_pred HHhcc-----------------------------------CCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHH
Q 010019 362 CIDDS-----------------------------------GLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLI 405 (520)
Q Consensus 362 lL~~~-----------------------------------~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv 405 (520)
+|.+. ....+..++..|+++|++|+.. ++++..+++.|+++.|+
T Consensus 368 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv 447 (780)
T 2z6g_A 368 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447 (780)
T ss_dssp GTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 66431 1123568889999999999865 57888999999999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCCHHH---HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019 406 VVSARFSDDASVLQEVMSIITVLSLRSPEN---AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL 482 (520)
Q Consensus 406 ~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~---~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~ 482 (520)
++|...++.+.+++.|+++|.+|+.++++. +..+...|+++.|+++|.. ++.+.+++.|||+|+||+. +++++..
T Consensus 448 ~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~-~~~~~v~~~A~~aL~nLa~-~~~~~~~ 525 (780)
T 2z6g_A 448 RTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAP 525 (780)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHHS-SHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 999854445699999999999999866653 4578899999999999964 4557999999999999964 6777899
Q ss_pred HHhCCHHHHHHHHHHhCc-----------------------chHHHHHHHHHHcCCC
Q 010019 483 LLSNGVEKLIRQAKENHE-----------------------ICKDAATDALRDLGLD 516 (520)
Q Consensus 483 l~~~G~~~lL~~~~~~h~-----------------------~~~~~a~aALr~Lg~~ 516 (520)
+.+.|+.+.|..++.... .....+..||++|..+
T Consensus 526 i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~ 582 (780)
T 2z6g_A 526 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582 (780)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence 999999988888775421 1234578888888654
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=8.6e-28 Score=260.01 Aligned_cols=360 Identities=13% Similarity=0.116 Sum_probs=299.3
Q ss_pred HHHHHHHHhhcCCCCCChh-hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDE-DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~-d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La 201 (520)
.+..|...+.+ + +.+.+..++..|..++.. ++.++..+++.|++|.|+.+|++. +..++..|+++|.
T Consensus 131 ~i~~Lv~~L~~-------~~~~~v~~~A~~~L~~l~~~--~~~~~~~~~~~g~i~~Lv~lL~~~---~~~vr~~A~~aL~ 198 (530)
T 1wa5_B 131 VVPRLVEFMRE-------NQPEMLQLEAAWALTNIASG--TSAQTKVVVDADAVPLFIQLLYTG---SVEVKEQAIWALG 198 (530)
T ss_dssp CHHHHHHTTST-------TSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHHHHHC---CHHHHHHHHHHHH
T ss_pred CHHHHHHHhCC-------CCCHHHHHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 46777777765 4 678889999999999996 788899999999999999999974 7888888888888
Q ss_pred Hhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHH
Q 010019 202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (520)
Q Consensus 202 ~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~ 280 (520)
+++.+. ..+..++..|+++.|+++|.+ .+.+++..++|+|.++|.............|+++.|+.+|.+.+..++..
T Consensus 199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~ 276 (530)
T 1wa5_B 199 NVAGDSTDYRDYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 276 (530)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHH
T ss_pred HHhCCCccchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHH
Confidence 887653 335667788999999999985 67899999999999999765344556667899999999998877788899
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHH
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL 359 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~L 359 (520)
++|+|.+|+...+. ..+.+.+.|+++.|+.+|.. .+..++..++++|++|+. +++..+.+.+.|+++.|
T Consensus 277 a~~~L~~L~~~~~~---------~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 346 (530)
T 1wa5_B 277 ACWAISYLSDGPQE---------AIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL 346 (530)
T ss_dssp HHHHHHHHHSSCHH---------HHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCCHH---------HHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHH
Confidence 99999999976432 23356688999999999985 467889999999999994 56778888999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CH--HH
Q 010019 360 LRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SP--EN 435 (520)
Q Consensus 360 l~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~--~~ 435 (520)
+.+|... +..++..|+++|++|+. +++....+++.|+++.|+.+|. ..++.+++.++++|.+|+.. ++ ++
T Consensus 347 ~~lL~~~----~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~ 420 (530)
T 1wa5_B 347 RLLLSSP----KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE--VAEYKTKKEACWAISNASSGGLQRPDI 420 (530)
T ss_dssp HHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTTCTHH
T ss_pred HHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999863 35899999999999984 6677778889999999999998 56899999999999999874 45 78
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh-----------hHHHHHhCCHHHHHHHHHHhCc--ch
Q 010019 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE-----------NRKLLLSNGVEKLIRQAKENHE--IC 502 (520)
Q Consensus 436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e-----------~~~~l~~~G~~~lL~~~~~~h~--~~ 502 (520)
...+++.|+++.++.+|.. .++.++..|+++|.++....+. .+..+.+.|+.+.|..+. .|+ ..
T Consensus 421 ~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~-~~~~~~v 497 (530)
T 1wa5_B 421 IRYLVSQGCIKPLCDLLEI--ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ-QNENDKI 497 (530)
T ss_dssp HHHHHHTTCHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG-GCSCHHH
T ss_pred HHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH-cCCCHHH
Confidence 8899999999999999964 5899999999999999754322 456788889998887754 564 45
Q ss_pred HHHHHHHHHHcCC
Q 010019 503 KDAATDALRDLGL 515 (520)
Q Consensus 503 ~~~a~aALr~Lg~ 515 (520)
+..|..+|.++-.
T Consensus 498 ~~~a~~il~~~~~ 510 (530)
T 1wa5_B 498 YEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHCC
Confidence 6678888887653
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=1.2e-27 Score=270.93 Aligned_cols=364 Identities=17% Similarity=0.189 Sum_probs=291.4
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..|...+.++ .+.+....++..|+.++. +..++..+.+.|+||.|+++|++. +..++..|+++|.+
T Consensus 193 ~i~~Lv~~L~~~------~d~~vr~~Aa~aL~~Ls~---~~~~~~~i~~~g~I~~Lv~lL~~~---~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 193 MVSAIVRTMQNT------NDVETARCTSGTLHNLSH---HREGLLAIFKSGGIPALVNMLGSP---VDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC------CCHHHHHHHHHHHHHHhC---CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 466666666541 377888999999999887 577899999999999999999874 67888888888888
Q ss_pred hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHH
Q 010019 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS 280 (520)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~ 280 (520)
++.+. ..+..+++.|+++.|+++|++ .+.++...++.+|.+++..++++|..+++.|+++.|+.+|+.... .....
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~ 338 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 338 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 87654 335666789999999999985 568888899999999998889999999999999999999998755 45556
Q ss_pred HHHHHHHhcCCCCcchhhhhhchHHHHHHHcC---------------------------------------CHHHHHHHH
Q 010019 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIG---------------------------------------IARALVHSL 321 (520)
Q Consensus 281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g---------------------------------------~l~~Lv~lL 321 (520)
++.+|++|+..++++. .+++.| +++.|+.+|
T Consensus 339 a~~aL~~Ls~~~~~~~----------~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL 408 (780)
T 2z6g_A 339 TSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 408 (780)
T ss_dssp HHHHHHHHHTSTTHHH----------HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred HHHHHHHhhcChHHHH----------HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH
Confidence 8999999998765544 233333 455666666
Q ss_pred hcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-Cc---hHHHHH
Q 010019 322 HAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS---NKSAII 396 (520)
Q Consensus 322 ~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~---~k~~Iv 396 (520)
+. .+..++..++++|++|+. ++++++.+++.||++.|+++|....+. ..++..|+++|++|+.. ++ .+..++
T Consensus 409 ~~-~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~--~~v~~~Al~aL~nL~~~~~~~~~~~~~v~ 485 (780)
T 2z6g_A 409 GS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLTSRHQDAEMAQNAVR 485 (780)
T ss_dssp TC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSSTTHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCH--HHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 53 357788999999999995 568899999999999999999874332 37999999999999864 33 356788
Q ss_pred hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC--------------------
Q 010019 397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP-------------------- 456 (520)
Q Consensus 397 ~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~-------------------- 456 (520)
+.|+++.|+++|.. .+.+.+++.+||+|+||+. +++++..+.+.|+++.|+++|....
T Consensus 486 ~~~~l~~L~~lL~~-~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~ 563 (780)
T 2z6g_A 486 LHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563 (780)
T ss_dssp HTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred HcCCHHHHHHHhcC-CChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence 99999999999972 3456999999999999996 6778889999999999999996521
Q ss_pred CCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcCCC
Q 010019 457 NAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLGLD 516 (520)
Q Consensus 457 ~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg~~ 516 (520)
....++..++.+|++|+ .+++++..+.+.|+.+.|..++... +..+..|..||.+|..+
T Consensus 564 ~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 564 RMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp CHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 12456777888899995 6789999999999988888877543 35677788899888643
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=3.3e-26 Score=221.49 Aligned_cols=240 Identities=18% Similarity=0.283 Sum_probs=214.1
Q ss_pred CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcch
Q 010019 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (520)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v 296 (520)
|+++.|+++|++ ++++++..++++|.+++..++.++..+++.|+++.|+++|++.+.+++..++++|.+|+.+++
T Consensus 2 ~~i~~L~~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--- 76 (252)
T 4hxt_A 2 NDVEKLVKLLTS--TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--- 76 (252)
T ss_dssp CHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---
T ss_pred CcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh---
Confidence 568999999975 458999999999999998888899999999999999999998877899999999999998642
Q ss_pred hhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHH
Q 010019 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375 (520)
Q Consensus 297 ~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~ 375 (520)
++.+.+.+.|+++.|+.+|++ +++.++..++++|++|+ .+++++..+.+.|+++.|+.+|.+. +..++
T Consensus 77 ------~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----~~~~~ 145 (252)
T 4hxt_A 77 ------EAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQ 145 (252)
T ss_dssp ------HHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHH
T ss_pred ------HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHH
Confidence 223467789999999999986 46789999999999999 7889999999999999999999863 35899
Q ss_pred HHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh
Q 010019 376 RICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK 454 (520)
Q Consensus 376 ~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~ 454 (520)
..++++|++|+. +++.+..+++.|+++.|+.+|. ++++.+++.++++|.+|+..++++++.+.+.|+++.++++|..
T Consensus 146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence 999999999996 5666688999999999999998 6789999999999999999899999999999999999999964
Q ss_pred CCCCHHHHHHHHHHHHHHhhhC
Q 010019 455 FPNAQQLQRSSCFMIRNLVARN 476 (520)
Q Consensus 455 ~~~~~~vqk~A~~aL~nL~~~~ 476 (520)
+++.+++.|+|+|+||+...
T Consensus 224 --~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 224 --TDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp --SCHHHHHHHHHHHHHHHHTC
T ss_pred --CcHHHHHHHHHHHHHHHcCC
Confidence 57899999999999997653
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=6.7e-26 Score=220.50 Aligned_cols=238 Identities=17% Similarity=0.197 Sum_probs=209.3
Q ss_pred CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcch
Q 010019 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (520)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v 296 (520)
...+.+++.|.+ ++++++..|+++|.++...++.++..+++.|+++.|+++|++.+.+++..|+++|.+|+.+++
T Consensus 12 ~~~~~~~~~L~s--~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--- 86 (252)
T 4db8_A 12 SELPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--- 86 (252)
T ss_dssp CSHHHHHHHHHS--SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---
T ss_pred chHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH---
Confidence 357889999984 578899999999987666677889999999999999999998877899999999999998542
Q ss_pred hhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhH-HHHHhcCChHHHHHHHhccCCCCcHHHH
Q 010019 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC-KSVAENGGIDALLRCIDDSGLQGNKTVA 375 (520)
Q Consensus 297 ~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~-~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~ 375 (520)
++.+.+.+.|+++.|+.+|++ +++.++..++++|++|+.+++++ ..+.+.|+++.|+.+|.+. +..++
T Consensus 87 ------~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~ 155 (252)
T 4db8_A 87 ------EQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQIL 155 (252)
T ss_dssp ------HHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHH
T ss_pred ------HHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC----CHHHH
Confidence 233477889999999999997 46789999999999999888877 8999999999999999763 35899
Q ss_pred HHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh
Q 010019 376 RICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK 454 (520)
Q Consensus 376 ~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~ 454 (520)
..++++|++|+. +++++..+++.|+++.|+++|. ++++.+++.++++|.+|+..+++++..+.+.|+++.++++|..
T Consensus 156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence 999999999996 5677888899999999999998 6689999999999999999899999999999999999999954
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 010019 455 FPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 455 ~~~~~~vqk~A~~aL~nL~~ 474 (520)
+++.++++|+|+|.||+.
T Consensus 234 --~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 234 --ENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp --SSSHHHHTHHHHHHTTC-
T ss_pred --CCHHHHHHHHHHHHHHhc
Confidence 578999999999999963
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=6.6e-25 Score=212.35 Aligned_cols=241 Identities=17% Similarity=0.295 Sum_probs=214.7
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L 340 (520)
|+++.|+++|++.+.+++..|+++|.+|+..++ ++.+.+++.|+++.|+.+|++. +..++..++++|++|
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l 71 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPA---------SAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI 71 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc---------HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 678999999998877888999999999998763 2345788999999999999874 578999999999999
Q ss_pred ccC-hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHH
Q 010019 341 AVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVL 418 (520)
Q Consensus 341 a~~-~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~ 418 (520)
+.+ ++++..+.+.|+++.|+.+|.+. +.+++..++++|++|+ .+++++..+++.|+++.|+++|+ ++++.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~ 145 (252)
T 4hxt_A 72 ASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQ 145 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHH
Confidence 976 89999999999999999999852 3589999999999999 67899999999999999999998 6789999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019 419 QEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN 498 (520)
Q Consensus 419 ~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~ 498 (520)
+.++++|++|+..++++...+.+.|+++.++.+|.. +++.+++.|+++|.|++..+++.+..+.+.|+.+.|..++..
T Consensus 146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence 999999999999899999999999999999999963 678999999999999988899999999999999999888754
Q ss_pred C-cchHHHHHHHHHHcCCCCCC
Q 010019 499 H-EICKDAATDALRDLGLDDYN 519 (520)
Q Consensus 499 h-~~~~~~a~aALr~Lg~~~~n 519 (520)
. +..+..|..+|++|+...++
T Consensus 224 ~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 224 TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp SCHHHHHHHHHHHHHHHHTCBC
T ss_pred CcHHHHHHHHHHHHHHHcCCCc
Confidence 3 46788899999999866554
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=7.1e-24 Score=206.15 Aligned_cols=237 Identities=19% Similarity=0.258 Sum_probs=208.7
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L 340 (520)
...+.++..|.+.+.+++..|+++|+++...+ .++.+.+++.|+++.|+.+|++. ++.++..++++|++|
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~---------~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG---------NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 81 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH---------HHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---------CchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 45789999999988899999999998765432 12345788999999999999875 578999999999999
Q ss_pred cc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH-HHHHhcCCHHHHHHHHhccCCCHHHH
Q 010019 341 AV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK-SAIIENGGMDKLIVVSARFSDDASVL 418 (520)
Q Consensus 341 a~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k-~~Iv~~g~l~~Lv~lL~~~~~~~~v~ 418 (520)
+. +++++..+++.|+++.|+.+|.+. +..++..|+++|++|+.+++++ ..+++.|+++.|+++|+ ++++.++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~ 155 (252)
T 4db8_A 82 ASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQIL 155 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHH
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh--CCCHHHH
Confidence 95 789999999999999999999872 3589999999999999988888 88999999999999998 6789999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019 419 QEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN 498 (520)
Q Consensus 419 ~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~ 498 (520)
+.++++|++|+..++++...+.+.|+++.++++|.. +++.+++.|+++|.|++..+++.+..+++.|+.+.|..++..
T Consensus 156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence 999999999999899999999999999999999964 489999999999999988899999999999999998888754
Q ss_pred C-cchHHHHHHHHHHcCC
Q 010019 499 H-EICKDAATDALRDLGL 515 (520)
Q Consensus 499 h-~~~~~~a~aALr~Lg~ 515 (520)
. +..+..|..||.+|..
T Consensus 234 ~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 234 ENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SSSHHHHTHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 3 4677889999999863
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=207.69 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=171.3
Q ss_pred CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-Ccch
Q 010019 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD-DDQV 296 (520)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d-d~~v 296 (520)
.+|.+|++|++.+.+.+++..++++|.++|..++.+|..+++.|+||+||++|++++.++++.|+|+|+||+.++ +++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk- 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK- 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH-
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH-
Confidence 578999999865544589999999999999888999999999999999999999987799999999999999853 343
Q ss_pred hhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHh----ccC-----
Q 010019 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCID----DSG----- 367 (520)
Q Consensus 297 ~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~----~~~----- 367 (520)
..|++.|+||+|+++|++..+.++++.++++||+|+..++++..|++ +|+++|+.++. ...
T Consensus 88 ---------~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 88 ---------LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp ---------HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCC
T ss_pred ---------HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccc
Confidence 37889999999999998655678999999999999999999999997 57999988652 110
Q ss_pred ---CCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCC-HHHHHHHHhcc----CCCHHHHHHHHHHHHHHhcC
Q 010019 368 ---LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGG-MDKLIVVSARF----SDDASVLQEVMSIITVLSLR 431 (520)
Q Consensus 368 ---~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~-l~~Lv~lL~~~----~~~~~v~~~a~~aL~nLa~~ 431 (520)
...+.+++..|.++|+||+. ++++|..|.+++| |+.|+.+++.. ..+...+|+|+++|+||+.+
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 01246899999999999987 4599999998865 69999999853 12457899999999999985
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.9e-23 Score=227.33 Aligned_cols=322 Identities=12% Similarity=0.084 Sum_probs=246.5
Q ss_pred HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcC-CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh--
Q 010019 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG-GPKLLVNILIDGNEDPEILNSGFAVVAASATGNE-- 251 (520)
Q Consensus 175 ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~g-gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e-- 251 (520)
.+.+++.|.+. +.+-+.||++.|+-++.+.+.+..++... .++.|+++++. ..+..+.-.++.++.|++...+
T Consensus 336 a~~~~~~L~~~---~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 336 SEIFINAISRR---IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHTTTC---CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHhcC---CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCccc
Confidence 34444444442 33447899999999987766678887654 49999999975 3456778888999999875222
Q ss_pred ------------------------------------hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcc
Q 010019 252 ------------------------------------VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ 295 (520)
Q Consensus 252 ------------------------------------~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~ 295 (520)
.+|..+.+.|+++.|+.++++.+..++..|+|+|.+|+.++++|
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 16778889999999999999988889999999999999987776
Q ss_pred hhhhhhchHHHHHHHcCCHHHHHHHHhcCCCh--hHHHHHHHHHHHhccChhhHHHHHh---cCChHHHHHHHhccCCCC
Q 010019 296 VVASQVYGYARRFAKIGIARALVHSLHAGLSS--PSLISASIALKAVAVNDEICKSVAE---NGGIDALLRCIDDSGLQG 370 (520)
Q Consensus 296 v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~--~~~~~a~~aL~~La~~~e~~~~i~~---~Ggv~~Ll~lL~~~~~~~ 370 (520)
. .+++.|++++|+.+|.++++. ..+..|+.||.+|+...+....+.. .|+|++|+++|...++..
T Consensus 492 ~----------~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~ 561 (778)
T 3opb_A 492 P----------QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD 561 (778)
T ss_dssp H----------HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred H----------HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcc
Confidence 6 788999999999999987633 2788999999999854433333321 389999999998322211
Q ss_pred ---------cHHH-HHHHHHHHHHhhCCCc-----hHHHHHhc-CCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019 371 ---------NKTV-ARICCSLLSKLAGSDS-----NKSAIIEN-GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (520)
Q Consensus 371 ---------~~~v-~~~al~aL~~La~~~~-----~k~~Iv~~-g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~ 434 (520)
-..+ ..+|+.+|.|||+.++ .+..|++. |+++.|.++|. ++++.++++||++|+||+. +++
T Consensus 562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--s~n~~VrrAA~elI~NL~~-~~e 638 (778)
T 3opb_A 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--DENVPLQRSTLELISNMMS-HPL 638 (778)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHT-SGG
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--CCCHHHHHHHHHHHHHHhC-CcH
Confidence 0113 5699999999998763 47778885 99999999998 7789999999999999997 677
Q ss_pred HH-HHHHhcC------cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC-CHHHHHHHHHHh---CcchH
Q 010019 435 NA-ARAMEAG------SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN-GVEKLIRQAKEN---HEICK 503 (520)
Q Consensus 435 ~~-~~i~~~G------~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~-G~~~lL~~~~~~---h~~~~ 503 (520)
.. +.+...+ .++.++.++. .++..+|+.|+|||+|+++.++..+..+++. +....+..++.. .++.+
T Consensus 639 ~i~~k~~~~~~~~~~~rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~ 716 (778)
T 3opb_A 639 TIAAKFFNLENPQSLRNFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELR 716 (778)
T ss_dssp GTGGGTSCCSSHHHHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHhhcCchhhccHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHH
Confidence 64 4554332 3778998884 4899999999999999988899999999998 454444455544 24566
Q ss_pred HHHHHHHHHcCC
Q 010019 504 DAATDALRDLGL 515 (520)
Q Consensus 504 ~~a~aALr~Lg~ 515 (520)
.-+..+|++|.+
T Consensus 717 ~R~~~~l~NL~~ 728 (778)
T 3opb_A 717 QRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 679999999986
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=202.97 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=169.1
Q ss_pred CHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010019 262 IDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA 339 (520)
Q Consensus 262 ~i~~Lv~lL~~~~~--~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~ 339 (520)
.++.||++|++.+. +++..|+++|.+|+..++. +.+.+.+.|+||+|+++|++. +++++..|+|+|+|
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~---------~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~n 78 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSE---------ARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRN 78 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH---------HHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 58999999998876 7788899999999975431 233778999999999999874 67899999999999
Q ss_pred hcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHh----c----
Q 010019 340 VAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA----R---- 410 (520)
Q Consensus 340 La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~----~---- 410 (520)
|+. +++++..|++.|||++|+++|.... +.++++.++++|++|+..+++|..|++ +|+++|++++. .
T Consensus 79 La~~~~~nk~~I~~~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~ 154 (233)
T 3tt9_A 79 LVFEDNDNKLEVAELNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEG 154 (233)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGG
T ss_pred HHhCCHHHHHHHHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccc
Confidence 996 6899999999999999999998532 248999999999999999999999998 57999998652 1
Q ss_pred ------cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CcHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhh
Q 010019 411 ------FSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDLAIQAMLK----FPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 411 ------~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~-G~i~~lv~~L~~----~~~~~~vqk~A~~aL~nL~~~ 475 (520)
+..++.++++|.++|+||+..++++++.+.++ |+++.|+.+++. ...+.+.+++|..+|+||+.+
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 12377999999999999998889999999987 457999999875 233557889999999999654
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.5e-22 Score=222.64 Aligned_cols=352 Identities=14% Similarity=0.084 Sum_probs=271.6
Q ss_pred CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHH
Q 010019 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSC 196 (520)
Q Consensus 118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~a 196 (520)
..+..+.+.++..+.+ .+.+.+..|++.|.-+.. ++.-|..+++ .|+++.|+++++.. .+..+.-.+
T Consensus 330 ~si~~La~~~~~~L~~-------~~~~~~~~AvEgLaYLSl---~~~VKe~L~~d~~~L~~Lv~llk~~--~d~s~~Yga 397 (778)
T 3opb_A 330 INLKQLSEIFINAISR-------RIVPKVEMSVEALAYLSL---KASVKIMIRSNESFTEILLTMIKSQ--KMTHCLYGL 397 (778)
T ss_dssp CCHHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHHTT---SSHHHHHHHHCHHHHHHHHHHHTTT--CCTTHHHHH
T ss_pred CcHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHHhC---CHHHHHHHHhCHHHHHHHHHHHhCC--CCchHHHHH
Confidence 3455677778888776 455568888888888877 6777787777 56699999999853 255677788
Q ss_pred HHHHHHhhcccc---------------------------------------cchhHHhcCCcHHHHHHHhcCCCChHHHH
Q 010019 197 LKTMALLVHDVQ---------------------------------------STETFRTGGGPKLLVNILIDGNEDPEILN 237 (520)
Q Consensus 197 l~~La~l~~~~~---------------------------------------~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~ 237 (520)
+..|+++++..+ .+..+++.|+++.|+.++++ .++.++.
T Consensus 398 l~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S--~s~~~re 475 (778)
T 3opb_A 398 LVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN--LSPNCKQ 475 (778)
T ss_dssp HHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG--SCHHHHH
T ss_pred HHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHH
Confidence 888888875332 12344577999999999975 5789999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh---HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCH
Q 010019 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN---DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIA 314 (520)
Q Consensus 238 ~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~---~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l 314 (520)
.++++|.+++. +..+|..+++.|++++|+.+|.++.. ....+|+++|.+|+...++...|+.. . -.|++
T Consensus 476 ~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~-~------~~~aI 547 (778)
T 3opb_A 476 QVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY-S------ALNAI 547 (778)
T ss_dssp HHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS-C------STTHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC-c------cccch
Confidence 99999999975 58899999999999999999998754 27788999999999777776644320 0 03899
Q ss_pred HHHHHHHhcCCChh------------H-HHHHHHHHHHhccCh-----hhHHHHHhc-CChHHHHHHHhccCCCCcHHHH
Q 010019 315 RALVHSLHAGLSSP------------S-LISASIALKAVAVND-----EICKSVAEN-GGIDALLRCIDDSGLQGNKTVA 375 (520)
Q Consensus 315 ~~Lv~lL~~~~~~~------------~-~~~a~~aL~~La~~~-----e~~~~i~~~-Ggv~~Ll~lL~~~~~~~~~~v~ 375 (520)
++|+++|..++... . +.+|+.||.|||..+ +.++.|++. |+++.|.++|.+. +..++
T Consensus 548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~----n~~Vr 623 (778)
T 3opb_A 548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE----NVPLQ 623 (778)
T ss_dssp HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS----SHHHH
T ss_pred HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC----CHHHH
Confidence 99999998322211 2 568999999999764 457888985 9999999999862 35899
Q ss_pred HHHHHHHHHhhCCCchH-HHHHhcC------CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CcHHH
Q 010019 376 RICCSLLSKLAGSDSNK-SAIIENG------GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDL 447 (520)
Q Consensus 376 ~~al~aL~~La~~~~~k-~~Iv~~g------~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~-G~i~~ 447 (520)
++|+.+|+||+.+++.. ..+.+.+ +++.|+.+++ +++..++++|+|+|+|++..++..++.+++. ++++.
T Consensus 624 rAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~ 701 (778)
T 3opb_A 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIEN 701 (778)
T ss_dssp HHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHH
Confidence 99999999999988864 3454322 4889999998 7899999999999999987799999999998 79999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhh-----ChhhHHHHHhC-CHHHHHHHHHH
Q 010019 448 AIQAMLKFPNAQQLQRSSCFMIRNLVAR-----NPENRKLLLSN-GVEKLIRQAKE 497 (520)
Q Consensus 448 lv~~L~~~~~~~~vqk~A~~aL~nL~~~-----~~e~~~~l~~~-G~~~lL~~~~~ 497 (520)
++.+++.-.++.+++..+..+++||+.. ..+....+.+. .....+..+++
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk 757 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLK 757 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHS
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHh
Confidence 9999987546899999999999999852 22344455522 44455555553
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=3.8e-22 Score=188.63 Aligned_cols=198 Identities=19% Similarity=0.247 Sum_probs=173.9
Q ss_pred hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010019 259 ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (520)
Q Consensus 259 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~ 338 (520)
..|..+.|+.+|++.+.+++..|+++|.+|+..++. +.+.+.+.|+++.|+++|++. ++.++..++++|+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~---------~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~ 79 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNE---------QIQAVIDAGALPALVQLLSSP-NEQILQEALWALS 79 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH---------HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH---------HHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 457899999999987779999999999999965432 234778899999999999874 6789999999999
Q ss_pred Hhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHH
Q 010019 339 AVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDAS 416 (520)
Q Consensus 339 ~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~ 416 (520)
+|+ .++++++.+++.|+++.|+.+|.+. +..++..|+++|++|+. +++.+..+++.|+++.|+++|+ ++++.
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~ 153 (210)
T 4db6_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQ 153 (210)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHH
T ss_pred HHhcCCcHHHHHHHHCCCHHHHHHHHcCC----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc--CCCHH
Confidence 999 5788999999999999999999863 35899999999999994 5677788999999999999998 67899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 417 v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
+++.++++|++|+..+++++..+.+.|+++.+++++.. +++.++++|+++|++|+.
T Consensus 154 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHhc
Confidence 99999999999999889999999999999999999964 689999999999999953
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=1.1e-21 Score=185.43 Aligned_cols=196 Identities=20% Similarity=0.307 Sum_probs=175.3
Q ss_pred HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-C
Q 010019 310 KIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-G 387 (520)
Q Consensus 310 ~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~ 387 (520)
..|+.+.|+.+|++ .++.++..++++|++|+ .+++++..+++.|+++.|+++|.+. +..++..|+++|++|+ +
T Consensus 10 ~~~~~~~l~~LL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 10 HGSELPQMVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASG 84 (210)
T ss_dssp ---CHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTS
T ss_pred ccchhHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC
Confidence 35789999999986 46889999999999999 6788999999999999999999863 3589999999999999 5
Q ss_pred CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHH
Q 010019 388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF 467 (520)
Q Consensus 388 ~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~ 467 (520)
+++++..+++.|+++.|+.+|+ ++++.+++.++++|+||+..++++...+++.|+++.++++|.. ++..+++.|+|
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~ 160 (210)
T 4db6_A 85 GNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALW 160 (210)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHH
Confidence 7789999999999999999998 6689999999999999999899999999999999999999964 58899999999
Q ss_pred HHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcC
Q 010019 468 MIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLG 514 (520)
Q Consensus 468 aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg 514 (520)
+|.|++..+++.+..+.+.|+.+.|..++... +..+..|..||++|.
T Consensus 161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 99999888899999999999999998887643 467888999999986
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=7.9e-21 Score=190.51 Aligned_cols=213 Identities=16% Similarity=0.151 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHH-HHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhc
Q 010019 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVH-SLHAGLSSPSLISASIALKAVAV-NDEICKSVAEN 353 (520)
Q Consensus 276 ~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~-lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~ 353 (520)
+....|...|..|+.+.| ++..|.+.|++|+|+. +|++ +++.++..|+|+|++++. ++++++.+++.
T Consensus 55 e~k~~Al~~L~~lv~~~d----------na~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~ 123 (296)
T 1xqr_A 55 QEREGALELLADLCENMD----------NAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 123 (296)
T ss_dssp HHHHHHHHHHHHHHTSHH----------HHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhChh----------hHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 445567888888887544 3557889999999999 9985 568899999999999995 56778889999
Q ss_pred CChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS 432 (520)
Q Consensus 354 Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~ 432 (520)
||+++|+.+|+..+ +..+++.|+++|++|+. ++...+.++++||++.|+.+|+ ++++.++..+||+|++|+.++
T Consensus 124 g~l~~Ll~LL~~~~---~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 124 GALRKLLRLLDRDA---CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp THHHHHHHHHHHCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCC
Confidence 99999999998632 24899999999999984 5677888999999999999998 679999999999999999989
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh--CCHHHHHHHHHHh---CcchHHHH
Q 010019 433 PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS--NGVEKLIRQAKEN---HEICKDAA 506 (520)
Q Consensus 433 ~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~--~G~~~lL~~~~~~---h~~~~~~a 506 (520)
++++..+++.|+++.|+.+|.. .+..+++.|+++|.||+...+........ .....+|...+.. |..|+++-
T Consensus 199 ~~~~~~vv~~g~i~~Lv~LL~~--~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~ 275 (296)
T 1xqr_A 199 PEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEEL 275 (296)
T ss_dssp GGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHcC--CChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999999999999999954 57889999999999998776655554433 2355666555444 44577653
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=2.8e-20 Score=186.48 Aligned_cols=223 Identities=13% Similarity=0.138 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILE-ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (520)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g 312 (520)
+-...|+..|..++. +.+|...|.+.|++++|+. +|++....++..|+|+|++++.+++. ..+.+++.|
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~---------~~~~vv~~g 124 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA---------IQEQVLGLG 124 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH---------HHHHHHHCC
Confidence 445678888888875 5568889999999999999 99987779999999999999986532 233677899
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCc
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDS 390 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~ 390 (520)
++|+|+.+|++.++..+++.|+|||++|+. ++...+.+.+.||++.|+.+|.+. +..++..+|++|++|+ ++++
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~----d~~v~~~A~~aLs~L~~~~~~ 200 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVGHPE 200 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCChH
Confidence 999999999976567899999999999995 566778899999999999999862 3589999999999998 5678
Q ss_pred hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc--Cc---HHHHHHHHHhCCCCHHHHHHH
Q 010019 391 NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA--GS---GDLAIQAMLKFPNAQQLQRSS 465 (520)
Q Consensus 391 ~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~--G~---i~~lv~~L~~~~~~~~vqk~A 465 (520)
.+..+++.|+++.|+.+|. ++++.+++.++.+|.+|+...+.....+... .. ++...+.++.|..+.++.+.|
T Consensus 201 ~~~~vv~~g~i~~Lv~LL~--~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~ 278 (296)
T 1xqr_A 201 HKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFC 278 (296)
T ss_dssp GHHHHHHTTHHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHc--CCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 8999999999999999998 6788999999999999998766555544321 11 222233344343344555556
Q ss_pred HHHHHHH
Q 010019 466 CFMIRNL 472 (520)
Q Consensus 466 ~~aL~nL 472 (520)
...|.++
T Consensus 279 ~~il~~~ 285 (296)
T 1xqr_A 279 EKLLQTC 285 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.66 E-value=4.5e-14 Score=152.00 Aligned_cols=344 Identities=12% Similarity=0.090 Sum_probs=255.1
Q ss_pred CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHH
Q 010019 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL 197 (520)
Q Consensus 118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al 197 (520)
..+.+.|+.|...+++. .-.+....|+..|+.++++ +|..+ -++|+|.|+..|+... .|.++...+|
T Consensus 17 qs~~etI~~L~~Rl~~~------tl~eDRR~Av~~Lk~~sk~-----y~~~V-g~~~l~~li~~L~~d~-~D~e~v~~~L 83 (651)
T 3grl_A 17 HTEAETIQKLCDRVASS------TLLDDRRNAVRALKSLSKK-----YRLEV-GIQAMEHLIHVLQTDR-SDSEIIGYAL 83 (651)
T ss_dssp -CHHHHHHHHHHHHHHC------CSHHHHHHHHHHHHHTTTT-----TTTHH-HHHTHHHHHHHHHSCT-TCHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhc------cchhHHHHHHHHHHHHHHH-----hHHHh-hhhhHHHHHHHHhccc-ccHHHHHHHH
Confidence 34556788888777763 5578889999999998875 55444 4678999999998753 5778888899
Q ss_pred HHHHHhhccccc------------------chhHH-hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-hHHHH
Q 010019 198 KTMALLVHDVQS------------------TETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-VKESY 257 (520)
Q Consensus 198 ~~La~l~~~~~~------------------~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~-nr~~i 257 (520)
.+|.++....+. .+.|. +.++++.|+.+|+ +.+-.+...++..|..+|...+. +++.|
T Consensus 84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR~~alqlL~~L~~~r~~~~Q~~I 161 (651)
T 3grl_A 84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVRWPGVKLLTSLLKQLGPQVQQII 161 (651)
T ss_dssp HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999776543211 11232 4578999999997 45788888999999999877666 78888
Q ss_pred Hhc-CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHHHhcCC--C-hhHHHH
Q 010019 258 MEL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL--S-SPSLIS 332 (520)
Q Consensus 258 ~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~lL~~~~--~-~~~~~~ 332 (520)
... ++++.|+.+|....+.++..+..+|.+|+.++. +.++++ -+|+++.|+++++... + ..+..+
T Consensus 162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~----------~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D 231 (651)
T 3grl_A 162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG----------AIQKIVAFENAFERLLDIITEEGNSDGGIVVED 231 (651)
T ss_dssp HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH----------HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH----------HHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence 866 899999999987544444449999999998653 234555 5699999999998743 1 356789
Q ss_pred HHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCC--CcHHHHHH---HHHHHHHhhCC-------CchHHHHHhcC
Q 010019 333 ASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQ--GNKTVARI---CCSLLSKLAGS-------DSNKSAIIENG 399 (520)
Q Consensus 333 a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~--~~~~v~~~---al~aL~~La~~-------~~~k~~Iv~~g 399 (520)
++..|.+|. .|..|...+.+.|+++.|..+|....+. .......+ ++.+++.|... ..|..++.+.|
T Consensus 232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 999999999 5667888999999999999998642211 01123334 66777777533 24677899999
Q ss_pred CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC-----cHHHHHHH---HHhCCCCHHHHHHHHHHHHH
Q 010019 400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG-----SGDLAIQA---MLKFPNAQQLQRSSCFMIRN 471 (520)
Q Consensus 400 ~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G-----~i~~lv~~---L~~~~~~~~vqk~A~~aL~n 471 (520)
+++.|++++....-...++..|+.+++.+..+++.++..+.... ..+.++.+ |-.......++-.||..+..
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a 391 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC 391 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 99999999985444688999999999999999999999887643 11233332 22223457788889999999
Q ss_pred HhhhChhhHHHHHhC
Q 010019 472 LVARNPENRKLLLSN 486 (520)
Q Consensus 472 L~~~~~e~~~~l~~~ 486 (520)
...+|++.+..++..
T Consensus 392 y~~~N~~~Q~~i~~~ 406 (651)
T 3grl_A 392 FLYKNQKGQGEIVST 406 (651)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 998999877777754
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=5.5e-14 Score=151.33 Aligned_cols=300 Identities=12% Similarity=0.117 Sum_probs=226.1
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV- 252 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~- 252 (520)
.|+.|++=+++.+ -.+-...|+..|-++..+. +.-+.++|++.|+..|++..+|.++...++.+|.++...++.
T Consensus 22 tI~~L~~Rl~~~t--l~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 22 TIQKLCDRVASST--LLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHCC--SHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4666666666542 3334556777777777654 566678899999999999889999999999999886554332
Q ss_pred ----------------hHHHHH-hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CCH
Q 010019 253 ----------------VKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIA 314 (520)
Q Consensus 253 ----------------nr~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~l 314 (520)
+.+.|+ +.+.++.|+++|++.+-.++..+...|..|+.....+ +.+.|... +|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~--------~Q~~Il~~p~gi 168 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ--------VQQIILVSPMGV 168 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH--------HHHHHHHSTTHH
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHhCcccH
Confidence 233555 4578999999998866688888999999999765332 34566644 999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHH-hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchH
Q 010019 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNK 392 (520)
Q Consensus 315 ~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~-~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k 392 (520)
+.|+++|.+.. ..+..++..+|.+|+.++...++++ -.|+++.|+.++..........++..|+.+|.||. .|+.|+
T Consensus 169 ~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ 247 (651)
T 3grl_A 169 SRLMDLLADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ 247 (651)
T ss_dssp HHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence 99999998643 4466778999999996555555555 55999999999986332112478899999999998 467799
Q ss_pred HHHHhcCCHHHHHHHHhccCC----CHHHHHH---HHHHHHHHhcC------CHHHHHHHHhcCcHHHHHHHHHhCCCCH
Q 010019 393 SAIIENGGMDKLIVVSARFSD----DASVLQE---VMSIITVLSLR------SPENAARAMEAGSGDLAIQAMLKFPNAQ 459 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~~~~----~~~v~~~---a~~aL~nLa~~------~~~~~~~i~~~G~i~~lv~~L~~~~~~~ 459 (520)
..+.+.|+++.|..+|....+ .+....+ ++.++.-|+.. ++.|+..+.+.|+++.+++++....-..
T Consensus 248 ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~ 327 (651)
T 3grl_A 248 NFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA 327 (651)
T ss_dssp HHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCH
T ss_pred HHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCH
Confidence 999999999999999862111 1223344 56667777665 4578889999999999999987654467
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhCC
Q 010019 460 QLQRSSCFMIRNLVARNPENRKLLLSNG 487 (520)
Q Consensus 460 ~vqk~A~~aL~nL~~~~~e~~~~l~~~G 487 (520)
.++.+|..++..+..+|+.++..|.+..
T Consensus 328 ~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 328 DILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 8889999999999889999999998753
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.19 E-value=1.2e-10 Score=129.56 Aligned_cols=201 Identities=12% Similarity=0.077 Sum_probs=152.5
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L 340 (520)
..+.++++.|++.+...+..||++|.+|+.+... .+.+.+.|++.+++.-+-..++.++...|+++|+||
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~----------~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKC----------RKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL 103 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHH----------HHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHH----------HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3466778889987778899999999999975433 236668899988776544445678999999999999
Q ss_pred cc--ChhhHHHHHhcCChHHHHHHHhccCC------C-----C--c----HHHHHHHHHHHHHhh-CCCchHHHHHhcCC
Q 010019 341 AV--NDEICKSVAENGGIDALLRCIDDSGL------Q-----G--N----KTVARICCSLLSKLA-GSDSNKSAIIENGG 400 (520)
Q Consensus 341 a~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~------~-----~--~----~~v~~~al~aL~~La-~~~~~k~~Iv~~g~ 400 (520)
+. ..+.|..+++.|++++|+.++....+ . . . .++...++.+|++|+ ++++....+.+.|+
T Consensus 104 ~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 104 AQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc
Confidence 94 57899999999999999999864210 0 0 0 245567899999998 56677778999999
Q ss_pred HHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHH--HHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 401 MDKLIVVSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDL--AIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 401 l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~--lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
++.|+..|... .....++..++.+|.+|+..+++..+.+.+.|.... ++..+..+.. ..+..+|+.|.|+.
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHh
Confidence 99999988533 345789999999999999999999999998875332 2222334432 34568999999984
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.17 E-value=3.7e-10 Score=128.60 Aligned_cols=337 Identities=12% Similarity=0.023 Sum_probs=205.7
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHH--H--HhcCcHHHHHHHHhhcccCcHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAV--A--TKNGGVELVCSICYKMRCGSKRVLDSCLK 198 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~--i--~~~Gaip~Lv~lL~~~~~~~~~~~~~al~ 198 (520)
.+..|...+.+ ++......++..|..+|+. .+..... + .-.+.+|.|+.++++ .+..+...|++
T Consensus 129 ll~~L~~~l~~-------~~~~~r~~al~~L~~i~~~--~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~A~~ 196 (852)
T 4fdd_A 129 LLPKLCSLLDS-------EDYNTCEGAFGALQKICED--SAEILDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSHAVA 196 (852)
T ss_dssp HHHHHHHHHSC-------SSHHHHHHHHHHHHHHHHH--HTTHHHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH--hHHHhchhhhcchHHHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 57777777766 5666777888888888874 2221100 0 012356777776665 37788888999
Q ss_pred HHHHhhcccccchhHHh--cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChH
Q 010019 199 TMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRND 276 (520)
Q Consensus 199 ~La~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~ 276 (520)
+++.+..... ..+.. ...++.+++++. .++.++...+++++..++......-...++ +.++.++.+++..+++
T Consensus 197 aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~--d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~ 271 (852)
T 4fdd_A 197 CVNQFIISRT--QALMLHIDSFIENLFALAG--DEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDEN 271 (852)
T ss_dssp HHHTTTTTTC--HHHHTSHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHH
T ss_pred HHHHHHhccc--HHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHH
Confidence 9988764431 22211 134566666664 457899999999999987644322111112 4778888888876668
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH---cCCHHHHHHHHh----------cC-----------CChhHHHH
Q 010019 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLH----------AG-----------LSSPSLIS 332 (520)
Q Consensus 277 ~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~---~g~l~~Lv~lL~----------~~-----------~~~~~~~~ 332 (520)
+...|++.+..++.....+ .+.+ ...+|.|+..|. .. .+-.+...
T Consensus 272 vr~~a~e~l~~l~~~~~~~-----------~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~ 340 (852)
T 4fdd_A 272 VALEACEFWLTLAEQPICK-----------DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKC 340 (852)
T ss_dssp HHHHHHHHHHHHTTSTTHH-----------HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHH
T ss_pred HHHHHHHHHHHHhcchhHH-----------HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHH
Confidence 8888999999988643211 1111 134666766662 21 11135667
Q ss_pred HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
++.+|..|+.... ..+.. ..++.+..++.+ .+..+...|+.+|++++........-.-.+.++.++..|+ .
T Consensus 341 a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~--d 411 (852)
T 4fdd_A 341 SAAALDVLANVYR--DELLP-HILPLLKELLFH----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS--D 411 (852)
T ss_dssp HHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTC----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC--C
Confidence 8888888873211 11111 234555555543 3468999999999999965432111112356788888887 6
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI 492 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL 492 (520)
.++.|+..++++|.+++...+.......-.+.++.+++.|.. +++.|++.||++|.+++...+.....++ .++.+.|
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d--~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L 488 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD--SNKRVQEAACSAFATLEEEACTELVPYL-AYILDTL 488 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHH
Confidence 689999999999999985221110001112356777777753 5799999999999999754222222222 2445555
Q ss_pred HHHHHhC
Q 010019 493 RQAKENH 499 (520)
Q Consensus 493 ~~~~~~h 499 (520)
..++..+
T Consensus 489 ~~~l~~~ 495 (852)
T 4fdd_A 489 VFAFSKY 495 (852)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 5555554
No 43
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.13 E-value=7.6e-10 Score=123.21 Aligned_cols=197 Identities=10% Similarity=0.052 Sum_probs=154.9
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH-HHhccCCCCcHHHHHHHHHHHHHhh--CC
Q 010019 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR-CIDDSGLQGNKTVARICCSLLSKLA--GS 388 (520)
Q Consensus 312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~-lL~~~~~~~~~~v~~~al~aL~~La--~~ 388 (520)
..|.||++.|++ +++..+..||++|++|+.+++.++.+...|+|..++. +|.+ .+.+|+.+|+++|+||+ +.
T Consensus 34 ~~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D----~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD----NNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC----SCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhhcC
Confidence 356677788876 5677899999999999998899999999999988665 4554 23589999999999998 45
Q ss_pred CchHHHHHhcCCHHHHHHHHhccCCC-------------------HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHH
Q 010019 389 DSNKSAIIENGGMDKLIVVSARFSDD-------------------ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI 449 (520)
Q Consensus 389 ~~~k~~Iv~~g~l~~Lv~lL~~~~~~-------------------~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv 449 (520)
++.+..+++.|++++|..+|+..... ..+.++++.+|++||..+.+....+...|+++.++
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence 68888999999999999998642110 24667899999999988888888999999999999
Q ss_pred HHHHh-CCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHH--HhCc-chHHHHHHHHHHc
Q 010019 450 QAMLK-FPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAK--ENHE-ICKDAATDALRDL 513 (520)
Q Consensus 450 ~~L~~-~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~--~~h~-~~~~~a~aALr~L 513 (520)
..|.. ......++..|+.+|.+++..|++....+.+.|...++..++ ..+. .-...++..|+++
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNV 256 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhH
Confidence 98844 334578999999999999989999999999887543332222 2332 3355677888875
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.10 E-value=9.5e-09 Score=100.90 Aligned_cols=228 Identities=11% Similarity=0.004 Sum_probs=148.3
Q ss_pred hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc
Q 010019 215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294 (520)
Q Consensus 215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~ 294 (520)
..+.++.|++.|. ++++.+...|+++|+.+. . .++++.|+.+|++.+..+...|+++|..+...+..
T Consensus 21 ~~~~i~~L~~~L~--~~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 21 KKLNDDELFRLLD--DHNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HTSCHHHHHHHTT--CSSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHhhHHHHHHHHH--cCCHHHHHHHHHHHHccC--C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 3457888889886 357888888999998764 1 23678899999876667788899999887643321
Q ss_pred chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHH
Q 010019 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKT 373 (520)
Q Consensus 295 ~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~ 373 (520)
+. ..++.|...+...+++.+...++++|+++.. ++.... ..++.|+.+|.+ +++.
T Consensus 88 -------------~~--~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d----~~~~ 143 (280)
T 1oyz_A 88 -------------ED--NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFD----KSTN 143 (280)
T ss_dssp -------------HH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC----SCHH
T ss_pred -------------ch--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhC----CCHH
Confidence 00 1233343333334567788888999988863 222111 235677777664 2457
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHH
Q 010019 374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML 453 (520)
Q Consensus 374 v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~ 453 (520)
+...++.+|+++.. .++++.|+.+|. .+++.|+..++++|..+...++ ..++.++.++.
T Consensus 144 vR~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~ 202 (280)
T 1oyz_A 144 VRRATAFAISVIND----------KATIPLLINLLK--DPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQ 202 (280)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhc
Confidence 88888888887653 247888999887 6688899999999988864333 24566666664
Q ss_pred hCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHHHcC
Q 010019 454 KFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLG 514 (520)
Q Consensus 454 ~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~Lg 514 (520)
. .++.|+..|+++|.++. +++ +.+.|..++. .++....|..||..+|
T Consensus 203 d--~~~~vR~~A~~aL~~~~--~~~---------~~~~L~~~l~-d~~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 203 D--KNEEVRIEAIIGLSYRK--DKR---------VLSVLCDELK-KNTVYDDIIEAAGELG 249 (280)
T ss_dssp C--SCHHHHHHHHHHHHHTT--CGG---------GHHHHHHHHT-SSSCCHHHHHHHHHHC
T ss_pred C--CCHHHHHHHHHHHHHhC--CHh---------hHHHHHHHhc-CccHHHHHHHHHHhcC
Confidence 3 56888888888888873 332 3333434432 2445555666666665
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.05 E-value=2e-08 Score=98.52 Aligned_cols=251 Identities=14% Similarity=0.048 Sum_probs=173.8
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
++..|...+.+ ++......|+..|..+.. .+++|.|+.+|++. +..+...|..+|+.
T Consensus 24 ~i~~L~~~L~~-------~~~~vr~~A~~~L~~~~~-------------~~~~~~L~~~l~d~---~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 24 NDDELFRLLDD-------HNSLKRISSARVLQLRGG-------------QDAVRLAIEFCSDK---NYIRRDIGAFILGQ 80 (280)
T ss_dssp CHHHHHHHTTC-------SSHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHTCS---SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHc-------CCHHHHHHHHHHHHccCC-------------chHHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 36677777765 567777777877776542 24789999999864 77788888888887
Q ss_pred hhcccccchhHHhcCCcHHHHHHHhc---CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHH
Q 010019 203 LVHDVQSTETFRTGGGPKLLVNILID---GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ 279 (520)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~---~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~ 279 (520)
+.... ..++.++.+|.+ ...++.+...++++|+.++..+.... ...++.|+..|++.+..++.
T Consensus 81 l~~~~---------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~ 146 (280)
T 1oyz_A 81 IKICK---------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRR 146 (280)
T ss_dssp SCCCT---------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHH
T ss_pred hcccc---------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHH
Confidence 64221 123334444321 24578899999999998764332111 23578888888876668888
Q ss_pred HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHH
Q 010019 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDAL 359 (520)
Q Consensus 280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~L 359 (520)
.|+++|..+.. .++++.|+.+|++ +++.+...++++|..+..... ..++.|
T Consensus 147 ~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~--------~~~~~L 197 (280)
T 1oyz_A 147 ATAFAISVIND--------------------KATIPLLINLLKD-PNGDVRNWAAFAININKYDNS--------DIRDCF 197 (280)
T ss_dssp HHHHHHHTC-----------------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH--------HHHHHH
T ss_pred HHHHHHHhcCC--------------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH--------HHHHHH
Confidence 89999986642 2478999999975 467788999999998853221 235677
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019 360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439 (520)
Q Consensus 360 l~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i 439 (520)
+.+|.+ .+..+...++.+|+.+. ....++.|+.+|+ . +.++..++.+|..+..
T Consensus 198 ~~~l~d----~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~--d--~~vr~~a~~aL~~i~~--------- 250 (280)
T 1oyz_A 198 VEMLQD----KNEEVRIEAIIGLSYRK----------DKRVLSVLCDELK--K--NTVYDDIIEAAGELGD--------- 250 (280)
T ss_dssp HHHTTC----SCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHT--S--SSCCHHHHHHHHHHCC---------
T ss_pred HHHhcC----CCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhc--C--ccHHHHHHHHHHhcCc---------
Confidence 777764 24589999999999876 2357899999997 2 2388899999998753
Q ss_pred HhcCcHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010019 440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMI 469 (520)
Q Consensus 440 ~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL 469 (520)
...++.|.+++..+++ ..+...+..+|
T Consensus 251 --~~~~~~L~~~l~~~~~-~~~~~~~~~~l 277 (280)
T 1oyz_A 251 --KTLLPVLDTMLYKFDD-NEIITSAIDKL 277 (280)
T ss_dssp --GGGHHHHHHHHTTSSC-CHHHHHHHHHH
T ss_pred --hhhhHHHHHHHhcCCC-cHHHHHHHHHh
Confidence 2467888888877654 44555555554
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.91 E-value=6.4e-08 Score=110.06 Aligned_cols=349 Identities=11% Similarity=0.044 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc-chhHHhcCCc
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP 219 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~-~~~i~~~ggi 219 (520)
.+......++..|..++.. ... ...-.-.+.+|.|+.+|+.. ++.+...|.++++.+...... .....-.+.+
T Consensus 371 ~~~~~R~aa~~alg~i~~~--~~~-~~~~~l~~~l~~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 444 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEG--CMQ-GMIPYLPELIPHLIQCLSDK---KALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTT--THH-HHGGGHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc--chH-HHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566677777777764 221 11112245788888888653 667766666666655432100 0111122456
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhh
Q 010019 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS 299 (520)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~ 299 (520)
+.+++.|.. .++.++..++++|.++|......-..+. .+.++.|+.+++.........+..++..++..-.. .+.
T Consensus 445 ~~L~~~L~d--~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~--~~~ 519 (852)
T 4fdd_A 445 TELLKRILD--SNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH--HLN 519 (852)
T ss_dssp HHHHHHHTC--SSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGG--GGC
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhh--hhc
Confidence 777777753 4789999999999998743221111111 35677788888766544444455555555421000 000
Q ss_pred hhchHHHHHHHcCCHHHHHHHHhcCC--ChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhcc---------
Q 010019 300 QVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDS--------- 366 (520)
Q Consensus 300 ~a~~~a~~i~~~g~l~~Lv~lL~~~~--~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~--------- 366 (520)
+ . .+.+ ..+|.|++.+.... ++++ ..++.+|..++. .......+.. .++.++.++...
T Consensus 520 ~-~----~~~~-~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~--i~~~~~~~l~~~l~~~~~~~~ 590 (852)
T 4fdd_A 520 K-P----EYIQ-MLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEP--VYQRCVNLVQKTLAQAMLNNA 590 (852)
T ss_dssp C-H----HHHH-HHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred c-H----HHHH-HHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 0 0 1221 24677776655433 3444 467777777762 2222222111 234455555431
Q ss_pred ----CCCCcHHHHHHHHHHHHHhhC--CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019 367 ----GLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM 440 (520)
Q Consensus 367 ----~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~ 440 (520)
.+.++.+++..++.+|+.++. .++.+..+.+.+.++.++..+. ..++.+++.+.++|..++...++.....+
T Consensus 591 ~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~l 668 (852)
T 4fdd_A 591 QPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQHVKPCI 668 (852)
T ss_dssp CTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred CCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC--CCChhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 112234788899999999973 2444455556688899999887 56799999999999999864444333322
Q ss_pred hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh---CcchHHHHHHHHHHcCC
Q 010019 441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN---HEICKDAATDALRDLGL 515 (520)
Q Consensus 441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~---h~~~~~~a~aALr~Lg~ 515 (520)
.. .++.+++.+ ..+++.+.++|+|++..++...++....++. .+.+.|...+.. +....+.+..++..||.
T Consensus 669 ~~-~lp~l~~~l--~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 669 AD-FMPILGTNL--NPEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp HH-HHHHHHHTC--CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTH-HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHc--CccchHHHHHHHHHHHHHHHHhhHhHHHHHH-HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 22 456666666 3357889999999999997543332222222 444444444432 12456667777777763
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.87 E-value=6.2e-08 Score=90.85 Aligned_cols=186 Identities=11% Similarity=0.081 Sum_probs=143.7
Q ss_pred CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcch
Q 010019 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (520)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v 296 (520)
+.++.|++.|+ +.+..+...++++|+.+.. .++++.|+++|.+.+..+...++++|..+..
T Consensus 19 ~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 19 EKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 45788999987 4578999999999876531 3578999999997666888889999987652
Q ss_pred hhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHH
Q 010019 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR 376 (520)
Q Consensus 297 ~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~ 376 (520)
.+.++.|+.+|++ +++.+...++++|..+.. .+.++.|+.+|.+ ++..+..
T Consensus 80 --------------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~ 130 (211)
T 3ltm_A 80 --------------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD----EDWFVRI 130 (211)
T ss_dssp --------------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHH
T ss_pred --------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC----CCHHHHH
Confidence 2357899999875 467888999999998853 2457888888864 2468999
Q ss_pred HHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC
Q 010019 377 ICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP 456 (520)
Q Consensus 377 ~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~ 456 (520)
.++.+|+.+.. ...++.|+.+|+ ..++.|+..++.+|..+.. ...++.|..++..
T Consensus 131 ~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d-- 185 (211)
T 3ltm_A 131 AAAFALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAET-- 185 (211)
T ss_dssp HHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC--
Confidence 99999998842 247889999997 6789999999999999853 2356778888875
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q 010019 457 NAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 457 ~~~~vqk~A~~aL~nL~~~ 475 (520)
.++.|++.|..+|.++...
T Consensus 186 ~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 186 GTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp CCHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 5789999999999998543
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.84 E-value=1e-07 Score=88.63 Aligned_cols=185 Identities=11% Similarity=0.090 Sum_probs=144.2
Q ss_pred cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcc
Q 010019 216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ 295 (520)
Q Consensus 216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~ 295 (520)
.+..+.+++.|+ +.+..+...++++|..+.. .+.++.|+++|...+..+...|+++|..+..
T Consensus 13 ~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred CcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 356778888886 4578999999999986531 2578999999987666788889999987642
Q ss_pred hhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHH
Q 010019 296 VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375 (520)
Q Consensus 296 v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~ 375 (520)
..+++.|+.+|.+ +++.+...++++|+.+.. ...++.|+.+|.+ +++.+.
T Consensus 75 ---------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr 124 (201)
T 3ltj_A 75 ---------------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD----EDWFVR 124 (201)
T ss_dssp ---------------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHH
T ss_pred ---------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC----CCHHHH
Confidence 2358899999975 567888999999998753 2357788888864 246899
Q ss_pred HHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC
Q 010019 376 RICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF 455 (520)
Q Consensus 376 ~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~ 455 (520)
..++.+|+.+.. .+.++.|+.++. ..++.|+..++.+|..+. ++ ..++.+..++..
T Consensus 125 ~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d- 180 (201)
T 3ltj_A 125 IAAAFALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAET- 180 (201)
T ss_dssp HHHHHHHHHHTC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhC-
Confidence 999999998752 357889999997 678999999999999984 22 256777888865
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 010019 456 PNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 456 ~~~~~vqk~A~~aL~nL~ 473 (520)
.++.|+..|..+|..+-
T Consensus 181 -~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 181 -GTGFARKVAVNYLETHK 197 (201)
T ss_dssp -CCHHHHHHHHHHHHHCC
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 57899999999998873
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.82 E-value=9.9e-08 Score=89.43 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=143.9
Q ss_pred cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (520)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e 251 (520)
.+.++.|+.+|++. +..+...|+..|+.+.. .++++.|+++|.+ .+..+...++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~---~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~--- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD---SYYVRRAAAYALGKIGD----------ERAVEPLIKALKD--EDAWVRRAAADALGQIGD--- 79 (211)
T ss_dssp GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC---
T ss_pred HhHHHHHHHHHcCC---CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC---
Confidence 46899999999863 78888888888887542 2467889999873 578999999999987631
Q ss_pred hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHH
Q 010019 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (520)
Q Consensus 252 ~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~ 331 (520)
.++++.|+.+|++.+..++..|+++|..+.. ...++.|+.+|.+ +++.+..
T Consensus 80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~ 130 (211)
T 3ltm_A 80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRI 130 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhC-CCHHHHH
Confidence 3578899999987766888889999987753 2357889998864 5678899
Q ss_pred HHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019 332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411 (520)
Q Consensus 332 ~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~ 411 (520)
.++.+|+++.. ...++.|+.++.+ ++..|...++.+|+.+.. ..+++.|..+++
T Consensus 131 ~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-- 184 (211)
T 3ltm_A 131 AAAFALGEIGD----------ERAVEPLIKALKD----EDGWVRQSAADALGEIGG----------ERVRAAMEKLAE-- 184 (211)
T ss_dssp HHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHH--
T ss_pred HHHHHHHHcCC----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHh--
Confidence 99999999842 2357888888864 245899999999998843 246778888998
Q ss_pred CCCHHHHHHHHHHHHHHhcC
Q 010019 412 SDDASVLQEVMSIITVLSLR 431 (520)
Q Consensus 412 ~~~~~v~~~a~~aL~nLa~~ 431 (520)
.+++.|+..|..+|..+...
T Consensus 185 d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 185 TGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HCCHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHhcCCC
Confidence 57899999999999988754
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.76 E-value=1.7e-07 Score=87.18 Aligned_cols=185 Identities=13% Similarity=0.102 Sum_probs=143.8
Q ss_pred cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (520)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e 251 (520)
.+..+.++++|++. +..+...|+..|+.+.. .+.++.|+++|. ..+..+...++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~---~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~--- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD---SYYVRRAAAYALGKIGD----------ERAVEPLIKALK--DEDAWVRRAAADALGQIGD--- 74 (201)
T ss_dssp HHHHHHHHHHTTCS---CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC---
T ss_pred CcchHHHHHHhcCC---CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCC---
Confidence 46788999999874 78888888888887542 235788999996 4578899999999987531
Q ss_pred hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHH
Q 010019 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (520)
Q Consensus 252 ~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~ 331 (520)
..+++.|+.+|...+..++..|+++|..+.. ..+++.|+.+|.+ +++.+..
T Consensus 75 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~ 125 (201)
T 3ltj_A 75 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRI 125 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHcC-CCHHHHH
Confidence 2578899999987666888889999987642 1357889998864 4678889
Q ss_pred HHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019 332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411 (520)
Q Consensus 332 ~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~ 411 (520)
.++++|+.+.. ...++.|+.++.+ ++..+...++.+|+.+.. ..+++.|..+++
T Consensus 126 ~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~-- 179 (201)
T 3ltj_A 126 AAAFALGEIGD----------ERAVEPLIKALKD----EDGWVRQSAADALGEIGG----------ERVRAAMEKLAE-- 179 (201)
T ss_dssp HHHHHHHHHTC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHH--
T ss_pred HHHHHHHHhCC----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHh--
Confidence 99999998842 3457788888875 245899999999998832 236788888997
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 010019 412 SDDASVLQEVMSIITVLS 429 (520)
Q Consensus 412 ~~~~~v~~~a~~aL~nLa 429 (520)
..++.|+..+..+|..|-
T Consensus 180 d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 180 TGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HCCHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 568999999999998765
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.72 E-value=9.6e-07 Score=96.43 Aligned_cols=305 Identities=11% Similarity=0.064 Sum_probs=174.0
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (520)
Q Consensus 124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l 203 (520)
+..+...+.+ .++.....|+..+.++++. +++ .+.+.+.+|.|..+|.. .++.++..|+.+|..+
T Consensus 123 ~~~l~~~L~d-------~~~~VRk~A~~al~~i~~~--~p~---~~~~~~~~~~l~~lL~d---~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 123 CEPLRKCLKD-------EDPYVRKTAAVCVAKLHDI--NAQ---MVEDQGFLDSLRDLIAD---SNPMVVANAVAALSEI 187 (591)
T ss_dssp HHHHHHHSSC-------SCHHHHHHHHHHHHHHHHS--SCC---CHHHHHHHHHHHHTTSC---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-------CChHHHHHHHHHHHHHHhh--Chh---hcccccHHHHHHHHhCC---CChhHHHHHHHHHHHH
Confidence 3446666554 6777778888889888875 443 33345788999999975 3788999999999998
Q ss_pred hcccccchhH-HhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHH
Q 010019 204 VHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY 282 (520)
Q Consensus 204 ~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 282 (520)
..+.+....+ ...+.++.+++.|.. .++..+...+++++..+...+... ...++.+...|++.+..++.+|+
T Consensus 188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~ 260 (591)
T 2vgl_B 188 SESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAV 260 (591)
T ss_dssp TTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHH
T ss_pred HhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHH
Confidence 7654211001 111235667777753 467888888888887764433222 23566777777766668888999
Q ss_pred HHHHHhcCCC--CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhH------------
Q 010019 283 DAIRVLLTPD--DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEIC------------ 347 (520)
Q Consensus 283 ~aL~~Ls~~d--d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~------------ 347 (520)
+++..+...- +.. ..+.+. ....++|+.++. ++++++..++.+|..+.. +++..
T Consensus 261 ~~i~~l~~~~~~~~~--------~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~ 329 (591)
T 2vgl_B 261 KVLMKFLELLPKDSD--------YYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYN 329 (591)
T ss_dssp HHHHHSCCSCCBTTB--------SHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTT
T ss_pred HHHHHHhhccCCCHH--------HHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccC
Confidence 9999987421 110 111222 235677776653 456777777777777652 22110
Q ss_pred ------HH-------HHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019 348 ------KS-------VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414 (520)
Q Consensus 348 ------~~-------i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~ 414 (520)
.. ++....++.++.-|..+..+.+.+++..++.+|+.++...... ....++.|+++|+ ...
T Consensus 330 d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~--~~~ 403 (591)
T 2vgl_B 330 DPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQ--TKV 403 (591)
T ss_dssp SCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHH--TCC
T ss_pred ChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHc--ccc
Confidence 00 1122233333333333322233456666666666666432110 1123456666665 344
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
..+...+..+|..|..+.|+.. ..+++.+.+.+.. ..++.+...++|+|...+
T Consensus 404 ~~v~~e~i~~l~~ii~~~p~~~-----~~~v~~L~~~l~~-~~~~~~~~~~~wilGey~ 456 (591)
T 2vgl_B 404 NYVVQEAIVVIRDIFRKYPNKY-----ESIIATLCENLDS-LDEPDARAAMIWIVGEYA 456 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSC-----CTTHHHHHHTTTT-CCSHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHCcchH-----HHHHHHHHHHHHh-ccCHHHHHHHHHHHHccc
Confidence 5555555556665554333321 2344555555532 235666667777777664
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.71 E-value=8e-07 Score=97.06 Aligned_cols=271 Identities=11% Similarity=0.124 Sum_probs=166.6
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (520)
.+|.+..+|.+ .++.+...|..++..+....+ ..+.+.+.++.+.++|. +.++.++..|+.+|..++..++..
T Consensus 122 l~~~l~~~L~d---~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 122 LCEPLRKCLKD---EDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIA--DSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHHSSC---SCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHcCC---CChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhC--CCChhHHHHHHHHHHHHHhhCCCc
Confidence 35667777765 378888888888877765432 22333456788888885 467899999999999998765432
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHH
Q 010019 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (520)
Q Consensus 254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a 333 (520)
...-...+.+..|+..+...++-.+.....+|..++..++. .. ...++.+..+|++ .++.++.+|
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~---------~~-----~~~l~~l~~~l~~-~~~~V~~ea 259 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR---------EA-----QSICERVTPRLSH-ANSAVVLSA 259 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH---------HH-----HHHHHHHTTCSCS-STTHHHHHH
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH---------HH-----HHHHHHHHHHHcC-CChHHHHHH
Confidence 10001123466777777665555555677778777744321 11 1246677777764 467899999
Q ss_pred HHHHHHhcc----ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCch-----------------
Q 010019 334 SIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSN----------------- 391 (520)
Q Consensus 334 ~~aL~~La~----~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~----------------- 391 (520)
++++.++.. +++..+.+.. ...+.|+.++. + ++.++..++.+|..++. +++.
T Consensus 260 ~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~--~---d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~ 333 (591)
T 2vgl_B 260 VKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS--G---EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIY 333 (591)
T ss_dssp HHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT--S---CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHH
T ss_pred HHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc--C---CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHH
Confidence 999999873 3344443332 33466666543 1 24677777777777752 1110
Q ss_pred --HHH------HHhcCCHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHH
Q 010019 392 --KSA------IIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL 461 (520)
Q Consensus 392 --k~~------Iv~~g~l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~v 461 (520)
+.+ +++...++.++.-|..| ..+..+++.++++|..++.+.+..... .++.+++++.. ....+
T Consensus 334 Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~-----~v~~Ll~ll~~--~~~~v 406 (591)
T 2vgl_B 334 VKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER-----CVSTLLDLIQT--KVNYV 406 (591)
T ss_dssp HHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHHHT--CCHHH
T ss_pred HHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH-----HHHHHHHHHcc--cchHH
Confidence 011 11223344444433333 346788888888888888877655443 35677777764 34556
Q ss_pred HHHHHHHHHHHhhhChhh
Q 010019 462 QRSSCFMIRNLVARNPEN 479 (520)
Q Consensus 462 qk~A~~aL~nL~~~~~e~ 479 (520)
.+++..+++++..++|+.
T Consensus 407 ~~e~i~~l~~ii~~~p~~ 424 (591)
T 2vgl_B 407 VQEAIVVIRDIFRKYPNK 424 (591)
T ss_dssp HHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHCcch
Confidence 677777888887666654
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.67 E-value=2.9e-06 Score=91.19 Aligned_cols=302 Identities=10% Similarity=0.009 Sum_probs=187.0
Q ss_pred cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc--hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010019 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG 249 (520)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~--~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~ 249 (520)
...+|.++.+++. .+..+...|..++..+...-... ........+|.+.++++ ..+..+...+++++..++..
T Consensus 280 ~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~--d~~~~vR~~a~~~l~~l~~~ 354 (588)
T 1b3u_A 280 TDLVPAFQNLMKD---CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS--DANQHVKSALASVIMGLSPI 354 (588)
T ss_dssp HTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT--CSCHHHHHHHHTTGGGGHHH
T ss_pred hHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHH
Confidence 3467888888865 36777777777777665432110 00222345677777775 34678888888888776532
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhH
Q 010019 250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (520)
Q Consensus 250 ~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~ 329 (520)
-. ++. .....++.++.+|+....+++..++.+|..++..-.. .......+|.|..++++ .+..+
T Consensus 355 ~~--~~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~------------~~~~~~~lp~l~~~~~d-~~~~v 418 (588)
T 1b3u_A 355 LG--KDN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI------------RQLSQSLLPAIVELAED-AKWRV 418 (588)
T ss_dssp HC--HHH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH------------HHHHHHHHHHHHHHHTC-SSHHH
T ss_pred hh--HhH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH------------HHHHHHHHHHHHHHhcC-CCchH
Confidence 11 111 2234778889999876667877888777766532110 01112357888888765 34567
Q ss_pred HHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHH
Q 010019 330 LISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVV 407 (520)
Q Consensus 330 ~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~l 407 (520)
...++.+|..++. ..+. .....++.++.+|.+ .+..|...++.+|+.++..-.... . ....+|.|+.+
T Consensus 419 r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~~~-~-~~~llp~l~~~ 488 (588)
T 1b3u_A 419 RLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEKFGKEW-A-HATIIPKVLAM 488 (588)
T ss_dssp HHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHHHHCHHH-H-HHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHhCchh-H-HHHHHHHHHHH
Confidence 7888888888863 2221 111234566666654 235899999999999974321111 1 22467777776
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCC
Q 010019 408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNG 487 (520)
Q Consensus 408 L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G 487 (520)
++ ..+..++..++.++..++..-. ........++.++..+.. .++.|+..+++++..++..-.. .+....
T Consensus 489 ~~--~~~~~~R~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~ 558 (588)
T 1b3u_A 489 SG--DPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGD--PVANVRFNVAKSLQKIGPILDN---STLQSE 558 (588)
T ss_dssp TT--CSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGC--SCHHHHHHHHHHHHHHGGGSCH---HHHHHH
T ss_pred hh--CCCHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHHHHHHHhch---hhhHHH
Confidence 65 5678999999999999885211 112223466777777643 5789999999999999753222 223345
Q ss_pred HHHHHHHHHHh-CcchHHHHHHHHHHcC
Q 010019 488 VEKLIRQAKEN-HEICKDAATDALRDLG 514 (520)
Q Consensus 488 ~~~lL~~~~~~-h~~~~~~a~aALr~Lg 514 (520)
+.+.|..++.. .++.+..|..||..|.
T Consensus 559 ~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 559 VKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 56666664322 2456777888887664
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.64 E-value=1.3e-05 Score=87.93 Aligned_cols=287 Identities=10% Similarity=0.047 Sum_probs=183.6
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (520)
..+|.+..+|++. ++.+...|+.++..+.... ++.++ +.++.+.++|. ..++.++..|+.++..++..+++
T Consensus 142 ~l~~~l~~~L~~~---~~~VRk~A~~al~~l~~~~---p~~v~-~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 142 DLAGEVEKLLKTS---NSYLRKKAALCAVHVIRKV---PELME-MFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHC---GGGGG-GGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHC---hHHHH-HHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChH
Confidence 3577788888763 7888888888888776543 33332 44556666665 45789999999999998765433
Q ss_pred hHHHHHhcCCHHHHHHHHhc---------------CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHH
Q 010019 253 VKESYMELKIDELILEILSR---------------QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL 317 (520)
Q Consensus 253 nr~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~L 317 (520)
....+. ..++.++.+|.. .++-.+.....+|+.++..+. ... ...++.|
T Consensus 213 ~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~-------------~~~-~~~~~~L 276 (618)
T 1w63_A 213 MLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD-------------DSS-EAMNDIL 276 (618)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH-------------HHH-HTTHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH-------------HHH-HHHHHHH
Confidence 223332 578889988874 123444557788888886542 111 2355666
Q ss_pred HHHHhcC-----CChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019 318 VHSLHAG-----LSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (520)
Q Consensus 318 v~lL~~~-----~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (520)
..+++.. .+..++..++.++..+...++... .+++.|..+|.+. + +.++..|+.+|..++.. .
T Consensus 277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~~-d---~~vr~~aL~~L~~i~~~---~ 344 (618)
T 1w63_A 277 AQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLNN-D---KNIRYVALTSLLKTVQT---D 344 (618)
T ss_dssp HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTCS-S---TTTHHHHHHHHHHHHHH---H
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhCC-C---CchHHHHHHHHHHHHhh---C
Confidence 6666521 124677888899988865443222 3457788887752 2 26888899999888743 1
Q ss_pred HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
..++. ...+.++..+. .++..|+..++.+|..|+. ++|...+ ++.+...+.. .+.++++.+..+|..+
T Consensus 345 p~~~~-~~~~~i~~~l~--d~d~~Ir~~alelL~~l~~--~~nv~~i-----v~eL~~~l~~--~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 345 HNAVQ-RHRSTIVDCLK--DLDVSIKRRAMELSFALVN--GNNIRGM-----MKELLYFLDS--CEPEFKADCASGIFLA 412 (618)
T ss_dssp HHHHG-GGHHHHHHGGG--SSCHHHHHHHHHHHHHHCC--SSSTHHH-----HHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHcc--CCChhHHHHHHHHHHHHcc--cccHHHH-----HHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence 22332 35667777776 6788999999999999884 3444444 3556666654 5788888999999999
Q ss_pred hhhChhh----HHHHH----hC------CHHHHHHHHHHhCcchHHHHHH
Q 010019 473 VARNPEN----RKLLL----SN------GVEKLIRQAKENHEICKDAATD 508 (520)
Q Consensus 473 ~~~~~e~----~~~l~----~~------G~~~lL~~~~~~h~~~~~~a~a 508 (520)
+.+.+.. ...++ .. .+...++++...+|+.+..+..
T Consensus 413 a~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~ 462 (618)
T 1w63_A 413 AEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQ 462 (618)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHH
Confidence 7653222 12221 12 2445666777777766554433
No 55
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.59 E-value=2.2e-06 Score=92.18 Aligned_cols=265 Identities=9% Similarity=0.018 Sum_probs=165.6
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (520)
.+|.+..+++. ++..+...|+.+|+.+..... ........+|.+..+++ .++..+...++.++..++...+.
T Consensus 165 l~~~l~~l~~d---~~~~VR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 165 LRQYFRNLCSD---DTPMVRRAAASKLGEFAKVLE--LDNVKSEIIPMFSNLAS--DEQDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp HHHHHHHHHTC---SCHHHHHHHHHHHHHHHHTSC--HHHHHHTHHHHHHHHHT--CSCHHHHTTHHHHHHHHHHHSCH-
T ss_pred HHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhc--HHhHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCH-
Confidence 45666666654 377888888888887764321 22223445677777775 34678888888888877643221
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHH
Q 010019 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (520)
Q Consensus 254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a 333 (520)
. ......++.+..++...+..++..++.+|..++..-.. .......++.++.+++. +++.+...+
T Consensus 237 -~-~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~------------~~~~~~l~~~l~~~l~d-~~~~vr~~a 301 (588)
T 1b3u_A 237 -E-DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP------------EITKTDLVPAFQNLMKD-CEAEVRAAA 301 (588)
T ss_dssp -H-HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH------------HHHHHTHHHHHHHHHTC-SSHHHHHHH
T ss_pred -H-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc------------ccchhHHHHHHHHHhCC-CcHHHHHHH
Confidence 1 12234677888888765557788899999888742110 11223468899999875 457788889
Q ss_pred HHHHHHhccC--hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019 334 SIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411 (520)
Q Consensus 334 ~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~ 411 (520)
+.+|..++.. ++......-...++.+..++.+ .++.+...++.+|..++..-.. ... ....+|.+..+|+
T Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d----~~~~vR~~a~~~l~~l~~~~~~-~~~-~~~l~p~l~~~l~-- 373 (588)
T 1b3u_A 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSD----ANQHVKSALASVIMGLSPILGK-DNT-IEHLLPLFLAQLK-- 373 (588)
T ss_dssp HHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC----SCHHHHHHHHTTGGGGHHHHCH-HHH-HHHTHHHHHHHHT--
T ss_pred HHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhH-hHH-HHHHHHHHHHHhC--
Confidence 9999988732 2211111122345667777664 2468999999999998732111 111 2246788888887
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 412 ~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
..++.|+..++.+|..++...... ......++.+...+.. .+..++..++.+|..++.
T Consensus 374 d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 374 DECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAED--AKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp CSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHH
Confidence 567899999999988876421110 0112345566665532 567777778887777753
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.59 E-value=6.8e-06 Score=90.19 Aligned_cols=264 Identities=11% Similarity=0.083 Sum_probs=174.2
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc-hhHHhcCCcHHHHHHHhcC-------------CCChHHHHH
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDG-------------NEDPEILNS 238 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~-------------~~~~~v~~~ 238 (520)
+.++.+..+|.. .++.++..|+.+|..+...++.. ..+ ...++.++++|.+. ..++..|..
T Consensus 179 ~~~~~l~~lL~D---~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 179 MFLPATKNLLNE---KNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp GGGGGTTTSTTC---CCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred HHHHHHHHHhCC---CCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 344455555543 47788989999999887543210 112 35688888888641 347889999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC------ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019 239 GFAVVAASATGNEVVKESYMELKIDELILEILSRQ------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (520)
Q Consensus 239 a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g 312 (520)
.+++++.++..++... ....+.|-.+++.. +..++-.+++++..+.... .+.+ .
T Consensus 254 il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~--------------~l~~-~ 313 (618)
T 1w63_A 254 ILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES--------------GLRV-L 313 (618)
T ss_dssp HHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH--------------HHHH-H
T ss_pred HHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH--------------HHHH-H
Confidence 9999999886544322 23456666666421 2277778899998875421 1221 3
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (520)
+++.|..+|.+ ++++++.-++.+|..++.... .+++ .....++.++.+ .+..+...++.+|..|+... |-
T Consensus 314 a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d----~d~~Ir~~alelL~~l~~~~-nv 383 (618)
T 1w63_A 314 AINILGRFLLN-NDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKD----LDVSIKRRAMELSFALVNGN-NI 383 (618)
T ss_dssp HHHHHHHHHTC-SSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGS----SCHHHHHHHHHHHHHHCCSS-ST
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccC----CChhHHHHHHHHHHHHcccc-cH
Confidence 57888888875 457788888899988874321 2222 234566777764 23589999999999998643 33
Q ss_pred HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
..| ++.|...+. ..+..++..++.+|..+|.+.+...... ++.++++++... ..+...+...++.+
T Consensus 384 ~~i-----v~eL~~~l~--~~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~ll~lL~~~~--~~v~~~~~~~l~~i 449 (618)
T 1w63_A 384 RGM-----MKELLYFLD--SCEPEFKADCASGIFLAAEKYAPSKRWH-----IDTIMRVLTTAG--SYVRDDAVPNLIQL 449 (618)
T ss_dssp HHH-----HHHHHHHHH--HCCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHHHHHHHHTG--GGSCSSHHHHHHHH
T ss_pred HHH-----HHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence 434 357777777 5689999999999999998654443333 567777776632 34555667778888
Q ss_pred hhhChhhHHHHHh
Q 010019 473 VARNPENRKLLLS 485 (520)
Q Consensus 473 ~~~~~e~~~~l~~ 485 (520)
..++|+.+...+.
T Consensus 450 i~~~p~l~~~~v~ 462 (618)
T 1w63_A 450 ITNSVEMHAYTVQ 462 (618)
T ss_dssp HHHSCSTHHHHHH
T ss_pred HhcChhHHHHHHH
Confidence 7778877665543
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.56 E-value=4.8e-06 Score=94.14 Aligned_cols=326 Identities=10% Similarity=0.022 Sum_probs=189.6
Q ss_pred HHHHHHHHhhcCCCCCChh--hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDE--DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~--d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L 200 (520)
.+..|...+.+ + +......++..|..+++.- +++. ..-.-...++.++..++..+ .+..++..|++++
T Consensus 129 ll~~l~~~l~~-------~~~~~~~r~~al~~l~~l~~~~-~~~~-~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l 198 (876)
T 1qgr_A 129 LIPQLVANVTN-------PNSTEHMKESTLEAIGYICQDI-DPEQ-LQDKSNEILTAIIQGMRKEE-PSNNVKLAATNAL 198 (876)
T ss_dssp HHHHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHHS-CHHH-HGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHhc-CHhh-HHhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHH
Confidence 45556666655 4 6666777888888888630 1111 01111234566666665431 1467778888888
Q ss_pred HHhhcccccc--hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHH
Q 010019 201 ALLVHDVQST--ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI 278 (520)
Q Consensus 201 a~l~~~~~~~--~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~ 278 (520)
..+...-... ........++.+.+.+. ..+.++...+++++..++......-...+....++.++..+....+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 276 (876)
T 1qgr_A 199 LNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA 276 (876)
T ss_dssp HHHGGGCHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 8765321000 00000112344444443 4567888899999998876544332333444678888888776556778
Q ss_pred HHHHHHHHHhcCCCC------------cchhhhhhchHHHHHHHcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHh
Q 010019 279 QSLYDAIRVLLTPDD------------DQVVASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAV 340 (520)
Q Consensus 279 ~~a~~aL~~Ls~~dd------------~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~------~~~~~~~a~~aL~~L 340 (520)
..++..+..++.... ...+........+... ...++.++..|.... +..+...++.+|..|
T Consensus 277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 888888887764210 0000000011122122 235788888886421 235667788888888
Q ss_pred ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc--hHHHHHhcCCHHHHHHHHhccCCCHHHH
Q 010019 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSAIIENGGMDKLIVVSARFSDDASVL 418 (520)
Q Consensus 341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~ 418 (520)
+..-. . ..++.++..+.....+.++.+...++.+|+.++.... ...... ...++.++..|. ..++.|+
T Consensus 356 ~~~~~--~-----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~--d~~~~vr 425 (876)
T 1qgr_A 356 ATCCE--D-----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK--DPSVVVR 425 (876)
T ss_dssp HHHHG--G-----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT--CSSHHHH
T ss_pred HHHCc--H-----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC--CCCHHHH
Confidence 73211 1 1244445444433223457899999999999986432 222222 246888999987 6689999
Q ss_pred HHHHHHHHHHhcCCHHHH--HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 419 QEVMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 419 ~~a~~aL~nLa~~~~~~~--~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
..|+++|.+++...+... .... ...++.++..|.. ++.|+..|+|+|.+++..
T Consensus 426 ~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 426 DTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA---EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHH
Confidence 999999999986433210 0000 1245666666643 488999999999999743
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.52 E-value=3.7e-07 Score=95.11 Aligned_cols=283 Identities=6% Similarity=-0.021 Sum_probs=169.0
Q ss_pred cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH---hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 010019 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR---TGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT 248 (520)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~---~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~ 248 (520)
.+.+|.|+..+++.. .+..+...++.+|..++.+.. ..+. ....++.++..|.....+.++...+++++.++..
T Consensus 127 ~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC--GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCC--chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 467888888887631 156677778888887775431 1111 1235677778886432368899999999988653
Q ss_pred CChhhHH-HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCCh
Q 010019 249 GNEVVKE-SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS 327 (520)
Q Consensus 249 ~~e~nr~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~ 327 (520)
.-+.+-. .....-.++.|.+.+.....++...++++|..++...... |. . ....+.++.++..++. .+.
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~---~----~~~~~l~~~~~~~~~~-~~~ 273 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY--ME---T----YMGPALFAITIEAMKS-DID 273 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--CT---T----TTTTTHHHHHHHHHHC-SSH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH--HH---H----HHHHHHHHHHHHHHcC-Cch
Confidence 2111110 0001113445555555444577788999998887532111 00 0 0111456677777765 356
Q ss_pred hHHHHHHHHHHHhccChhhHH------------------HHHh---cCChHHHHHHHhccC---CCCcHHHHHHHHHHHH
Q 010019 328 PSLISASIALKAVAVNDEICK------------------SVAE---NGGIDALLRCIDDSG---LQGNKTVARICCSLLS 383 (520)
Q Consensus 328 ~~~~~a~~aL~~La~~~e~~~------------------~i~~---~Ggv~~Ll~lL~~~~---~~~~~~v~~~al~aL~ 383 (520)
++...++..+..++....... .+.+ ...++.++..|.... ++.+..+...|+.+|.
T Consensus 274 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~ 353 (462)
T 1ibr_B 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM 353 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHH
Confidence 788888888877764321000 0111 123455666665421 1112367888999999
Q ss_pred HhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhcCcHHHHHHHHHhCCCCHHHH
Q 010019 384 KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQ 462 (520)
Q Consensus 384 ~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~-~~~~~i~~~G~i~~lv~~L~~~~~~~~vq 462 (520)
.|+..-. . .+.. ..++.+...|+ +.+..+++.++.+|..++.+.. +.....+ ...++.++..|.. .++.|+
T Consensus 354 ~l~~~~~-~-~~~~-~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d--~~~~Vr 425 (462)
T 1ibr_B 354 LLATCCE-D-DIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVVVR 425 (462)
T ss_dssp HHHHHTT-T-THHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGC--SCHHHH
T ss_pred HHHHhcc-H-HHHH-HHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcC--CCHHHH
Confidence 9874322 1 2222 35566777776 6689999999999999996432 2111111 4567888888854 579999
Q ss_pred HHHHHHHHHHhhh
Q 010019 463 RSSCFMIRNLVAR 475 (520)
Q Consensus 463 k~A~~aL~nL~~~ 475 (520)
..|||+|.+++..
T Consensus 426 ~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 426 DTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999754
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.42 E-value=6.9e-06 Score=92.62 Aligned_cols=326 Identities=12% Similarity=0.104 Sum_probs=187.0
Q ss_pred HHHHHHHHHhhcCCCCCChh-hHHHHHHHHHHHHHHhcCCCChhhH-HHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHH
Q 010019 122 QSLERLKQLDLNSKDKFSDE-DLNEMMGLFDKLIELCGGNEGSVNA-AVATKNGGVELVCSICYKMRCGSKRVLDSCLKT 199 (520)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~-d~~~~~~al~~L~~l~~~~~~~~~r-~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~ 199 (520)
..+..|...+.+ + +......++..|..+|+.- .+..+ ..-.....++.++..+.... .+..++..++++
T Consensus 134 ~ll~~L~~~l~~-------~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~al~~ 204 (861)
T 2bpt_A 134 ELMKIMVDNTGA-------EQPENVKRASLLALGYMCESA-DPQSQALVSSSNNILIAIVQGAQSTE-TSKAVRLAALNA 204 (861)
T ss_dssp HHHHHHHHHTST-------TSCHHHHHHHHHHHHHHHHTS-STTSSTTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHcC-ChhhhHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHH
Confidence 467777777765 4 6677778888888888741 12111 00011224556666665421 256788888888
Q ss_pred HHHhhcccccchhHH----hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh
Q 010019 200 MALLVHDVQSTETFR----TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275 (520)
Q Consensus 200 La~l~~~~~~~~~i~----~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~ 275 (520)
+..++.--. ..+. ....++.+.+.+. +.+.++...++.++..++......-...+....++.++..+...+.
T Consensus 205 l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 280 (861)
T 2bpt_A 205 LADSLIFIK--NNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPND 280 (861)
T ss_dssp HHHHGGGCH--HHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSH
T ss_pred HHHHHHHHH--HHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 877642110 0110 0112344444443 4578888899999988875433221122222556666667766555
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhh--------hchHHHHHHHcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhc
Q 010019 276 DSIQSLYDAIRVLLTPDDDQVVASQ--------VYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVA 341 (520)
Q Consensus 276 ~~~~~a~~aL~~Ls~~dd~~v~~~~--------a~~~a~~i~~~g~l~~Lv~lL~~~~------~~~~~~~a~~aL~~La 341 (520)
.+...++..+..++........+.. .....+.+. ...+|.|+..|+... +..+...++.+|..|+
T Consensus 281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~ 359 (861)
T 2bpt_A 281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA 359 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHH
Confidence 7788888888877643100000000 000111222 236788888887532 1356678888888887
Q ss_pred cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc--hHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSAIIENGGMDKLIVVSARFSDDASVLQ 419 (520)
Q Consensus 342 ~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~ 419 (520)
..-. ...++.++..+.....+.+..+.+.++.+|+.++.... .-...+. ..++.++..+. ..++.|+.
T Consensus 360 ~~~~-------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~--d~~~~vr~ 429 (861)
T 2bpt_A 360 QNCG-------NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKE 429 (861)
T ss_dssp HHHG-------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHH
T ss_pred HHcc-------HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC--CCcHHHHH
Confidence 4211 12234455554433223457899999999999995432 1112222 35677777776 56899999
Q ss_pred HHHHHHHHHhcCCHHHH--HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 420 EVMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 420 ~a~~aL~nLa~~~~~~~--~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
.++++|..++..-+... ... -...++.++..|.. ++.++..|||+|.+++..
T Consensus 430 ~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 430 TTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQD---HPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHh
Confidence 99999999885211100 000 11246677777743 388999999999999753
No 60
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.39 E-value=5e-05 Score=79.23 Aligned_cols=324 Identities=14% Similarity=0.111 Sum_probs=194.3
Q ss_pred HHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccc---cchhH-HhcCCcHHHHHHHhc--CCCChHHHHHHHH
Q 010019 168 VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---STETF-RTGGGPKLLVNILID--GNEDPEILNSGFA 241 (520)
Q Consensus 168 ~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~---~~~~i-~~~ggi~~Lv~lL~~--~~~~~~v~~~a~~ 241 (520)
......++..++.+|+.. ...++....|.-++-++.+.+ .+..+ .+...... .++.. ..++.-.+..++.
T Consensus 72 l~~~~~~~~~~l~lL~~~--~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~--~l~~~~~~~dd~~~ll~a~~ 147 (480)
T 1ho8_A 72 FKVNGKTLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLE--QLFDVSLKGDFQTVLISGFN 147 (480)
T ss_dssp --CSSTTHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHH--HHHHHCSCSSHHHHHHHHHH
T ss_pred hhcCchHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccch--HHHHHHhcccchHHHHHHHH
Confidence 333456788899999875 466788888888888877654 33333 22222111 12221 1233444455555
Q ss_pred HHHHHhcCChhhHHHHHhcCCHH--HHHHHHhcCC-hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC--CHHH
Q 010019 242 VVAASATGNEVVKESYMELKIDE--LILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARA 316 (520)
Q Consensus 242 ~L~~~~~~~e~nr~~i~~~g~i~--~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g--~l~~ 316 (520)
++..++......-+.+- ..+. .++..|+... .+.+--++..|..|...+..|. .+.+.+ .+++
T Consensus 148 l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~----------~f~~~~~~~~~~ 215 (480)
T 1ho8_A 148 VVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRD----------VIWLHEKKFMPT 215 (480)
T ss_dssp HHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHH----------HHHTTHHHHHHH
T ss_pred HHHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHH----------HHHHcccchhHH
Confidence 55554321111111100 1112 3555665532 2344457788888888776665 444332 3677
Q ss_pred HHHHHhcC-------------C---ChhHHHHHHHHHHHhccChhhHHHHHhcCCh--HHHHHHHhccCCCCcHHHHHHH
Q 010019 317 LVHSLHAG-------------L---SSPSLISASIALKAVAVNDEICKSVAENGGI--DALLRCIDDSGLQGNKTVARIC 378 (520)
Q Consensus 317 Lv~lL~~~-------------~---~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv--~~Ll~lL~~~~~~~~~~v~~~a 378 (520)
++..++.. + ...++-.++.++|-|+.+++....+...+.. ..|+++++....+ ++.+-+
T Consensus 216 l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KE---KvvRv~ 292 (480)
T 1ho8_A 216 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKE---KVSRLC 292 (480)
T ss_dssp HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSH---HHHHHH
T ss_pred HHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccc---hhHHHH
Confidence 76655521 1 1244678899999999999988888877643 5667777775543 899999
Q ss_pred HHHHHHhhCCC--ch----HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc---------------------C
Q 010019 379 CSLLSKLAGSD--SN----KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL---------------------R 431 (520)
Q Consensus 379 l~aL~~La~~~--~~----k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~---------------------~ 431 (520)
+++|+||...+ +. ++.++..++++.+-.+-.++-+++++.+.--...-.|-. -
T Consensus 293 la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W 372 (480)
T 1ho8_A 293 ISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW 372 (480)
T ss_dssp HHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence 99999998654 21 223444455555555555555678776654333322221 1
Q ss_pred CH---------HHHHHHHhcC--cHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019 432 SP---------ENAARAMEAG--SGDLAIQAMLKF--------PNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI 492 (520)
Q Consensus 432 ~~---------~~~~~i~~~G--~i~~lv~~L~~~--------~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL 492 (520)
+| +|+..+.+.+ .+..|+++|+.. +.++.+..-||--|..++...|+-+..+-+.|+-..+
T Consensus 373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V 452 (480)
T 1ho8_A 373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI 452 (480)
T ss_dssp CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH
T ss_pred CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH
Confidence 22 2333333322 367888888741 4578889999999999998899999888888999999
Q ss_pred HHHHHhCcchHHHHHHHHHH
Q 010019 493 RQAKENHEICKDAATDALRD 512 (520)
Q Consensus 493 ~~~~~~h~~~~~~a~aALr~ 512 (520)
+++| .|+ ..++.+.||.-
T Consensus 453 M~Lm-~h~-d~~Vr~~AL~a 470 (480)
T 1ho8_A 453 MELL-NHS-DSRVKYEALKA 470 (480)
T ss_dssp HHHT-SCS-SHHHHHHHHHH
T ss_pred HHHh-cCC-CHHHHHHHHHH
Confidence 8887 665 35555555543
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.38 E-value=4.6e-06 Score=86.80 Aligned_cols=283 Identities=9% Similarity=-0.014 Sum_probs=164.9
Q ss_pred HHHHHHHHhhcCCCCCChh--hHHHHHHHHHHHHHHhcCCCC-hhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDE--DLNEMMGLFDKLIELCGGNEG-SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT 199 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~--d~~~~~~al~~L~~l~~~~~~-~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~ 199 (520)
.+..|...+.+ + +......++..|+.+|+. . +..-... -...++.++.+|+... .+..++..|+++
T Consensus 129 ll~~L~~~l~~-------~~~~~~~r~~al~~l~~l~~~--~~~~~~~~~-~~~ll~~l~~~l~~~~-~~~~vr~~a~~~ 197 (462)
T 1ibr_B 129 LIPQLVANVTN-------PNSTEHMKESTLEAIGYICQD--IDPEQLQDK-SNEILTAIIQGMRKEE-PSNNVKLAATNA 197 (462)
T ss_dssp HHHHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHH--SCGGGTGGG-HHHHHHHHHHHHSTTC-CCHHHHHHHHHH
T ss_pred HHHHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHh--CCchhhHhH-HHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Confidence 56666666665 4 667777889999998874 2 1110111 1236777888886531 156788888888
Q ss_pred HHHhhccccc-c-hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHH
Q 010019 200 MALLVHDVQS-T-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDS 277 (520)
Q Consensus 200 La~l~~~~~~-~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~ 277 (520)
+..++.--.. . ......-.++.+.+.+. +.+.++...+++++..++......-...+..+.++.++..++...+++
T Consensus 198 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 275 (462)
T 1ibr_B 198 LLNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV 275 (462)
T ss_dssp HHHHTTTTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 8875421100 0 00000001333333332 456888889999999887544321111122266777888887766688
Q ss_pred HHHHHHHHHHhcCCC------------CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC------ChhHHHHHHHHHHH
Q 010019 278 IQSLYDAIRVLLTPD------------DDQVVASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKA 339 (520)
Q Consensus 278 ~~~a~~aL~~Ls~~d------------d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~------~~~~~~~a~~aL~~ 339 (520)
...++..+..++... +.+..........+... ...+|.++..|.... +..+...++.+|..
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~ 354 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 888888888776431 00000000011111111 235677777776431 23567788889988
Q ss_pred hccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc---hHHHHHhcCCHHHHHHHHhccCCCHH
Q 010019 340 VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS---NKSAIIENGGMDKLIVVSARFSDDAS 416 (520)
Q Consensus 340 La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~---~k~~Iv~~g~l~~Lv~lL~~~~~~~~ 416 (520)
|+..-. ..+. ...++.+...|. +.+..+...++.+|+.++.... .+..+ ...+|.++.+|+ ..++.
T Consensus 355 l~~~~~--~~~~-~~~~~~l~~~l~----~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~--d~~~~ 423 (462)
T 1ibr_B 355 LATCCE--DDIV-PHVLPFIKEHIK----NPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMK--DPSVV 423 (462)
T ss_dssp HHHHTT--TTHH-HHHHHHHHHHTT----CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGG--CSCHH
T ss_pred HHHhcc--HHHH-HHHHHHHHHHhc----CCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhc--CCCHH
Confidence 873211 1111 122344444444 2457899999999999995322 11112 356888999987 66899
Q ss_pred HHHHHHHHHHHHhc
Q 010019 417 VLQEVMSIITVLSL 430 (520)
Q Consensus 417 v~~~a~~aL~nLa~ 430 (520)
|+..||++|.+++.
T Consensus 424 Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 424 VRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999986
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.32 E-value=1.2e-05 Score=90.91 Aligned_cols=318 Identities=8% Similarity=0.019 Sum_probs=181.5
Q ss_pred cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHh---cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 010019 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT 248 (520)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~---~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~ 248 (520)
...+|.|+..+.+.. .+..+...++.++..++.... ++... ...++.++..|.....+.++...+++++..++.
T Consensus 127 ~~ll~~l~~~l~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 127 PELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 356788888887631 156677778888888775321 11111 123556666675432367888899999988764
Q ss_pred CChhh--HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC
Q 010019 249 GNEVV--KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS 326 (520)
Q Consensus 249 ~~e~n--r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~ 326 (520)
.-..+ ... .....++.+...+...+.++...++.+|..++....... ........++.++..+.. .+
T Consensus 204 ~~~~~~~~~~-~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~---------~~~~~~~l~~~~~~~~~~-~~ 272 (876)
T 1qgr_A 204 FTKANFDKES-ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM---------ETYMGPALFAITIEAMKS-DI 272 (876)
T ss_dssp GCHHHHTSHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC---------HHHHTTTHHHHHHHHHTC-SS
T ss_pred HHHHHHHhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHhcC-Cc
Confidence 32211 111 111245666666655455777788998988775321110 011222467777777654 35
Q ss_pred hhHHHHHHHHHHHhccChh----------------------hHHHHHhcCChHHHHHHHhccCC---CCcHHHHHHHHHH
Q 010019 327 SPSLISASIALKAVAVNDE----------------------ICKSVAENGGIDALLRCIDDSGL---QGNKTVARICCSL 381 (520)
Q Consensus 327 ~~~~~~a~~aL~~La~~~e----------------------~~~~i~~~Ggv~~Ll~lL~~~~~---~~~~~v~~~al~a 381 (520)
..+...++..+..++.... ..+... ...++.++..|....+ +.+..+...+..+
T Consensus 273 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~ 351 (876)
T 1qgr_A 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHH
Confidence 6777888888877763210 000000 1234566666653211 1223678888888
Q ss_pred HHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhcCcHHHHHHHHHhCCCCHH
Q 010019 382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQ 460 (520)
Q Consensus 382 L~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~-~~~~~i~~~G~i~~lv~~L~~~~~~~~ 460 (520)
|..|+..-. ..++. ..++.+...+. ..++.+++.++++|..++.+.. +...... ...++.++..|.. .++.
T Consensus 352 l~~l~~~~~--~~~~~-~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d--~~~~ 423 (876)
T 1qgr_A 352 LMLLATCCE--DDIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVV 423 (876)
T ss_dssp HHHHHHHHG--GGGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC--SSHH
T ss_pred HHHHHHHCc--HhhHH-HHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC--CCHH
Confidence 888874211 11221 23455555665 5689999999999999997543 3333322 3467888888853 5789
Q ss_pred HHHHHHHHHHHHhhhChhhH--HHHHhCCHHHHHHHHHHhCcchHHHHHHHHHHc
Q 010019 461 LQRSSCFMIRNLVARNPENR--KLLLSNGVEKLIRQAKENHEICKDAATDALRDL 513 (520)
Q Consensus 461 vqk~A~~aL~nL~~~~~e~~--~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~L 513 (520)
|+..|+|+|.+++...+... ...+. .+.+.|...+...+..+..+..||..+
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~l~~~~~v~~~a~~al~~l 477 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTSSTTTHH-HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhcccHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999986543310 01111 223333333333334455556666554
No 63
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.15 E-value=5.1e-05 Score=85.47 Aligned_cols=310 Identities=12% Similarity=0.071 Sum_probs=175.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc--hhHHhcCC
Q 010019 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGG 218 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~--~~i~~~gg 218 (520)
.+......++..|..++.. -.+..-.... ...+|.|+..++. .++.+...++.+++.+...-... ..-.-...
T Consensus 381 ~~~~~r~~a~~~l~~i~~~-~~~~~~~~~l-~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDG-PDKVQRTYYV-HQALPSILNLMND---QSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSS-SCHHHHHHHH-HHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred CChhHHHHHHHHHHHHHcC-CCHHHHHHHH-HHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 3444555667777777653 0111111111 2356777777654 35666655555555544221000 00011234
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-----hhhHHHHHhcCCHHHHHHHHhcCC--hHHHHHHHHHHHHhcCC
Q 010019 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGN-----EVVKESYMELKIDELILEILSRQR--NDSIQSLYDAIRVLLTP 291 (520)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~-----e~nr~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~Ls~~ 291 (520)
++.+++.|.. ++.++..+++++.+++... +.....+ ..+++.|+.++.+.+ ..++..++.+|..+...
T Consensus 456 l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 456 VQACLIGLQD---HPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHHTS---CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---ChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 6677777753 3888889999998876421 1111111 245778888887543 36777788888888754
Q ss_pred CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC--------C------ChhHHHHHHHHHHHhcc-ChhhHHHHHhcCCh
Q 010019 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAG--------L------SSPSLISASIALKAVAV-NDEICKSVAENGGI 356 (520)
Q Consensus 292 dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~--------~------~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv 356 (520)
..... . .... ..+|.+++.|... . ...++..++.+|.+++. ..+......+ ..+
T Consensus 531 ~~~~~-----~----~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~ 599 (861)
T 2bpt_A 531 ATDTV-----A----ETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLM 599 (861)
T ss_dssp CCGGG-----H----HHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred cchhh-----H----HHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHH
Confidence 32211 0 1111 2567777777642 1 12456678888888873 2221111111 234
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (520)
Q Consensus 357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~ 434 (520)
+.++.++..... + .+...++.+++.++.. ++....+- ..+|.++..|+ .+++.++..++.++..++....+
T Consensus 600 ~~l~~~l~~~~~--~-~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 600 GLFFRLLEKKDS--A-FIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALN--QVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp HHHHHHHHSTTG--G-GTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHH--CTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHccCCC--C-cHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhch
Confidence 566777765311 1 5788889999988732 22222232 36788888886 56778999999999988753333
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhh
Q 010019 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479 (520)
Q Consensus 435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~ 479 (520)
...... ...++.+++.+.....+..++..+..++..++...++.
T Consensus 673 ~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~ 716 (861)
T 2bpt_A 673 DFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp GGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred hccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh
Confidence 222221 23456677777643224678888999999997643333
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.95 E-value=2.7e-05 Score=91.94 Aligned_cols=271 Identities=11% Similarity=0.076 Sum_probs=160.9
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
.+..|-+.+.+ .|.+....|+..|.+..+. ....-..-.....++.|++.|.+ .+..++..|+.+|+.
T Consensus 7 ~l~~lL~~l~s-------~d~~~R~~A~~~L~~~l~~--~~~~~~~~~~~~il~~Ll~~L~d---~~~~vR~~A~~~L~~ 74 (1230)
T 1u6g_C 7 HISNLLEKMTS-------SDKDFRFMATNDLMTELQK--DSIKLDDDSERKVVKMILKLLED---KNGEVQNLAVKCLGP 74 (1230)
T ss_dssp HHHHHHHHTTC-------SSHHHHHHHHHHHHHHTSS--SCCSCCTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-------CCHhHHHHHHHHHHHHHcc--cccCCChhHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHH
Confidence 34555555655 7888888999999887764 21100001112467778888864 377788778888887
Q ss_pred hhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh------HHHHHhcCCHHHHHHHHhc-CCh
Q 010019 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV------KESYMELKIDELILEILSR-QRN 275 (520)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n------r~~i~~~g~i~~Lv~lL~~-~~~ 275 (520)
+...-. +..+ ...++.+++.|. +++..++..++.+|+.++...... ..... ...+|.|+..+.. .+.
T Consensus 75 l~~~~~--~~~~-~~i~~~Ll~~l~--d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~-~~llp~L~~~l~~~~~~ 148 (1230)
T 1u6g_C 75 LVSKVK--EYQV-ETIVDTLCTNML--SDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDV 148 (1230)
T ss_dssp HHTTSC--HHHH-HHHHHHHHHHTT--CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCH
T ss_pred HHHhCC--HHHH-HHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHH-HHHHHHHHHHHcCCCch
Confidence 764321 1111 123455555554 345667777888887776432211 11122 2478889999974 445
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCC
Q 010019 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGG 355 (520)
Q Consensus 276 ~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Gg 355 (520)
.++..|+.+|..++..-.... ..+. ...++.|+..|.. +++.+...++.+|..++..... .+. ...
T Consensus 149 ~~~~~al~~l~~~~~~~~~~l-----~~~~-----~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~--~~~-~~~ 214 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGGLL-----VNFH-----PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN--IVF-VDL 214 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCSSC-----TTTH-----HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC------C-TTH
T ss_pred HHHHHHHHHHHHHHHHhHhHH-----HHHH-----HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCH--HHH-HHH
Confidence 777778888988874211100 0011 1245666666664 4567888999999999843221 121 234
Q ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHH--hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAII--ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS 432 (520)
Q Consensus 356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv--~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~ 432 (520)
++.++..|....+. .+...++.+|..++..... .+. -...++.++..+. .+++.+++.++.++..++...
T Consensus 215 l~~l~~~L~~~~~~---~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 215 IEHLLSELSKNDSM---STTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHHTCSS---CSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccCCch---hHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHC
Confidence 67888888764221 3556677888777632111 111 1246788888887 567889999999988887543
No 65
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.89 E-value=0.00039 Score=69.27 Aligned_cols=177 Identities=16% Similarity=0.194 Sum_probs=134.8
Q ss_pred HHHHHhcCCChhHHHHHHHHHHH-hccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHH
Q 010019 317 LVHSLHAGLSSPSLISASIALKA-VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI 395 (520)
Q Consensus 317 Lv~lL~~~~~~~~~~~a~~aL~~-La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I 395 (520)
+++-|.+. +...++.+..-|.. +..+.++...++..+|+..|+.+.... +...+..++.+|.+|....+....|
T Consensus 123 iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 123 ILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhccccccch
Confidence 33445543 34567788888887 667789999999999999999999764 2489999999999999988888777
Q ss_pred Hh-cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCc----------HHHHHHHHH-hCCCCHHHHH
Q 010019 396 IE-NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS----------GDLAIQAML-KFPNAQQLQR 463 (520)
Q Consensus 396 v~-~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~----------i~~lv~~L~-~~~~~~~vqk 463 (520)
++ ...|..|..++. +....|.+.|+..|..++..++.+...+.++=- ...++..|+ ....+.++|.
T Consensus 198 vs~~~fI~~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 198 VAHSDTIQWLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hCCHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 74 346788888888 678999999999999999877767665543211 567888885 2347899999
Q ss_pred HHHHHHHHHhhhCh------hhHHHHHhCCHHHHHHHHHHhCc
Q 010019 464 SSCFMIRNLVARNP------ENRKLLLSNGVEKLIRQAKENHE 500 (520)
Q Consensus 464 ~A~~aL~nL~~~~~------e~~~~l~~~G~~~lL~~~~~~h~ 500 (520)
+|-.+|.-+-..-+ +....+-+.|+...+...+..+.
T Consensus 276 ~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~ 318 (339)
T 3dad_A 276 YTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAG 318 (339)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccC
Confidence 98877766654433 34455667899999998887774
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.83 E-value=0.038 Score=60.38 Aligned_cols=295 Identities=12% Similarity=0.110 Sum_probs=180.5
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~ 202 (520)
++..++.-+.+ .++-...-|++.|..+.. ++ +. ...+|.+.++|.+.+ .++-+...|+-++..
T Consensus 112 ~iN~l~kDl~~-------~n~~ir~lALr~L~~i~~----~e----~~-~~l~~~v~~~l~~~d-~~~~VRK~A~~al~k 174 (621)
T 2vgl_A 112 INNAIKNDLAS-------RNPTFMGLALHCIANVGS----RE----MA-EAFAGEIPKILVAGD-TMDSVKQSAALCLLR 174 (621)
T ss_dssp HHHHHHHHHHS-------CCHHHHHHHHHHHHHHCC----HH----HH-HHHTTHHHHHHHCSS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-------CCHHHHHHHHHHhhccCC----HH----HH-HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHH
Confidence 45566666655 455545555555555432 22 11 135677778883221 377787777777777
Q ss_pred hhcccccchhHHh-cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh----cC----
Q 010019 203 LVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS----RQ---- 273 (520)
Q Consensus 203 l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~----~~---- 273 (520)
+..-. ++.+. .+.++.+.++|. ..++.++..|+.++..+|..++ +.+. ..++.+++.|. .+
T Consensus 175 l~~~~---p~~~~~~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~~~~~---~~~~--~~~~~~~~~L~~ll~~~~~~~ 244 (621)
T 2vgl_A 175 LYRTS---PDLVPMGDWTSRVVHLLN--DQHLGVVTAATSLITTLAQKNP---EEFK--TSVSLAVSRLSRIVTSASTDL 244 (621)
T ss_dssp HHHHC---GGGCCCCSCHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCH---HHHT--THHHHHHHHHHHHHHCCSSSC
T ss_pred HHHhC---hhhcCchhHHHHHHHHhC--CCCccHHHHHHHHHHHHHHhCh---HHHH--HHHHHHHHHHHHHHhCCCCCc
Confidence 66433 34444 367888999885 4578999999999999886443 2221 34555555554 21
Q ss_pred ---------ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC--------C--hhHHHHHH
Q 010019 274 ---------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--------S--SPSLISAS 334 (520)
Q Consensus 274 ---------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~--------~--~~~~~~a~ 334 (520)
++=.+......|..++..+++.. .+.+.+ .++.++..+...+ + ..++-+++
T Consensus 245 ~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~--------~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~ 314 (621)
T 2vgl_A 245 QDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV--------RGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (621)
T ss_dssp STTEETTEESHHHHHHHHHHGGGSSSCSSHHH--------HHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCchHHHHHHHHHHHhCCCCCHHH--------HHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHH
Confidence 12233446667777765443221 112222 3444443332211 2 26777888
Q ss_pred HHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019 335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414 (520)
Q Consensus 335 ~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~ 414 (520)
.++..+..+++..+. ++..|..+|.. .++.++-.++..|..++........+ . .-.+.++..|+ +.++
T Consensus 315 ~~i~~l~~~~~~~~~-----~~~~L~~~L~~----~~~niry~aL~~l~~l~~~~~~~~~~-~-~~~~~i~~~L~-~d~d 382 (621)
T 2vgl_A 315 SLIIHHDSEPNLLVR-----ACNQLGQFLQH----RETNLRYLALESMCTLASSEFSHEAV-K-THIETVINALK-TERD 382 (621)
T ss_dssp HHHHHHCCCHHHHHH-----HHHHHHHHSSC----SCHHHHHHHHHHHHHHTTCTTTHHHH-H-TTHHHHHHHHT-TCCC
T ss_pred HHHHhcCCcHHHHHH-----HHHHHHHHhcC----CCcchHHHHHHHHHHHHhccCcHHHH-H-HHHHHHHHHhc-cCCC
Confidence 888888755544333 34567777753 23589999999999998653222333 2 35677888885 2457
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (520)
Q Consensus 415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~ 475 (520)
+.|+..++-+|..|+ +++|...++. .+...+.. .+....+.+..+|..++.+
T Consensus 383 ~~Ir~~aL~lL~~l~--~~~Nv~~Iv~-----eL~~yl~~--~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 383 VSVRQRAVDLLYAMC--DRSNAQQIVA-----EMLSYLET--ADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHHHHH-----HHHHHHHH--CCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHc--ChhhHHHHHH-----HHHHHHHh--cCHHHHHHHHHHHHHHHHh
Confidence 999999999999998 5677766653 45556654 4678888888888888754
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.59 E-value=0.012 Score=64.32 Aligned_cols=268 Identities=10% Similarity=0.051 Sum_probs=168.1
Q ss_pred HHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 010019 176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE 255 (520)
Q Consensus 176 p~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~ 255 (520)
..+..=|.+ .++-+...||.+|+++.. +++.+ ..++.+.++|.+.+.++-+...|+-++..+...+++
T Consensus 114 N~l~kDl~~---~n~~ir~lALr~L~~i~~-----~e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--- 181 (621)
T 2vgl_A 114 NAIKNDLAS---RNPTFMGLALHCIANVGS-----REMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--- 181 (621)
T ss_dssp HHHHHHHHS---CCHHHHHHHHHHHHHHCC-----HHHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---
T ss_pred HHHHHhcCC---CCHHHHHHHHHHhhccCC-----HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---
Confidence 344444444 477788899999999853 33332 346778888854456889999999999888765443
Q ss_pred HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh----c--CC----
Q 010019 256 SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH----A--GL---- 325 (520)
Q Consensus 256 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~----~--~~---- 325 (520)
.+...+.++.|.++|...+..++.+|+.+|..++..+.. .+ ...+|.++..|. . .+
T Consensus 182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~------------~~--~~~~~~~~~~L~~ll~~~~~~~~~~ 247 (621)
T 2vgl_A 182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE------------EF--KTSVSLAVSRLSRIVTSASTDLQDY 247 (621)
T ss_dssp GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH------------HH--TTHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH------------HH--HHHHHHHHHHHHHHHhCCCCCccch
Confidence 222347899999999776668888899999988754311 01 123444444333 2 11
Q ss_pred ------ChhHHHHHHHHHHHhccC--hhhHHHHHhcCChHHHHHHHhccCC-----CCcH--HHHHHHHHHHHHhhCCCc
Q 010019 326 ------SSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGL-----QGNK--TVARICCSLLSKLAGSDS 390 (520)
Q Consensus 326 ------~~~~~~~a~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~lL~~~~~-----~~~~--~v~~~al~aL~~La~~~~ 390 (520)
++-.+......|..++.. ++....+.+ .++.++..+.+.+. +.|. .|+-+|..++..+...++
T Consensus 248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~ 325 (621)
T 2vgl_A 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN 325 (621)
T ss_dssp EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH
Confidence 344566677777777742 344444433 12333332221110 0122 788889999888864332
Q ss_pred hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019 391 NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR 470 (520)
Q Consensus 391 ~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~ 470 (520)
... .++..|..+|. +.++.++..++.+|..++...|+. .++. .....++..|+.+ ++..+++.|.-.|.
T Consensus 326 ~~~-----~~~~~L~~~L~--~~~~niry~aL~~l~~l~~~~~~~--~~~~-~~~~~i~~~L~~d-~d~~Ir~~aL~lL~ 394 (621)
T 2vgl_A 326 LLV-----RACNQLGQFLQ--HRETNLRYLALESMCTLASSEFSH--EAVK-THIETVINALKTE-RDVSVRQRAVDLLY 394 (621)
T ss_dssp HHH-----HHHHHHHHHSS--CSCHHHHHHHHHHHHHHTTCTTTH--HHHH-TTHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhc--CCCcchHHHHHHHHHHHHhccCcH--HHHH-HHHHHHHHHhccC-CCHhHHHHHHHHHH
Confidence 222 35667888886 668999999999999999876531 1222 3456677777523 57889999999999
Q ss_pred HHhhhChhhHHHHH
Q 010019 471 NLVARNPENRKLLL 484 (520)
Q Consensus 471 nL~~~~~e~~~~l~ 484 (520)
.++ ++.+...++
T Consensus 395 ~l~--~~~Nv~~Iv 406 (621)
T 2vgl_A 395 AMC--DRSNAQQIV 406 (621)
T ss_dssp HHC--CHHHHHHHH
T ss_pred HHc--ChhhHHHHH
Confidence 985 455555544
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.58 E-value=0.068 Score=60.49 Aligned_cols=207 Identities=10% Similarity=0.066 Sum_probs=131.2
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCcchh
Q 010019 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVV 297 (520)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~dd~~v~ 297 (520)
++.|..+|... +..+...+..+++.+-.+.- |.+ ++..|+..+... .+.+.+.++..|.-+...+.
T Consensus 474 ~e~L~~~L~dd--~~~~~~~AalALGli~vGTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~---- 540 (963)
T 4ady_A 474 YEALKEVLYND--SATSGEAAALGMGLCMLGTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ---- 540 (963)
T ss_dssp HHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG----
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHhhhhcccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh----
Confidence 46677777632 33344456666665432221 222 345666665443 44778888888887776553
Q ss_pred hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI 377 (520)
Q Consensus 298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~ 377 (520)
..++.++++|....++.+...++.+++--.....+.. .|+.|+..+.... +..+...
T Consensus 541 --------------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~---~d~VRra 597 (963)
T 4ady_A 541 --------------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDS---NDDVRRA 597 (963)
T ss_dssp --------------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCS---CHHHHHH
T ss_pred --------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCC---cHHHHHH
Confidence 3578889999876667666666666642222222221 2345666665433 2478999
Q ss_pred HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCC
Q 010019 378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN 457 (520)
Q Consensus 378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~ 457 (520)
|.-+|+.++..+. ..++.+++.|.. +.++.|+..++.+|..++.+++.. .+++.|..++ |..
T Consensus 598 AViaLGlI~~g~~--------e~v~rlv~~L~~-~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~--~D~ 659 (963)
T 4ady_A 598 AVIALGFVLLRDY--------TTVPRIVQLLSK-SHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT--KDP 659 (963)
T ss_dssp HHHHHHHHTSSSC--------SSHHHHTTTGGG-CSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH--TCS
T ss_pred HHHHHHhhccCCH--------HHHHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc--cCC
Confidence 9999998864432 346677776654 458999999999999999876531 1345555554 446
Q ss_pred CHHHHHHHHHHHHHHhhhChhh
Q 010019 458 AQQLQRSSCFMIRNLVARNPEN 479 (520)
Q Consensus 458 ~~~vqk~A~~aL~nL~~~~~e~ 479 (520)
+..|.+.|..+|..+-.++.+.
T Consensus 660 d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 660 VDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp SHHHHHHHHHHHHHHSTTCCTT
T ss_pred CHHHHHHHHHHHHHHhcCCccc
Confidence 8899999999999997664443
No 69
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.53 E-value=0.081 Score=55.21 Aligned_cols=239 Identities=11% Similarity=0.066 Sum_probs=150.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC--CHHHHHHHHhcC-------------Ch----HHHHHHH
Q 010019 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK--IDELILEILSRQ-------------RN----DSIQSLY 282 (520)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g--~i~~Lv~lL~~~-------------~~----~~~~~a~ 282 (520)
++..|... ++...+..++.++..+.. .+..|..|.+.+ .+++++.+++.. .+ .++=.++
T Consensus 172 ~~~~L~~~-~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 172 LINILQNI-EQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHhccc-cCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 44455432 233445567777777765 577999998764 367777665532 11 2333477
Q ss_pred HHHHHhcCCCCcchhhhhhchHHHHHHHcCCH--HHHHHHHhcCCChhHHHHHHHHHHHhccCh-----hhHH-HHHhcC
Q 010019 283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIA--RALVHSLHAGLSSPSLISASIALKAVAVND-----EICK-SVAENG 354 (520)
Q Consensus 283 ~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l--~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~-----e~~~-~i~~~G 354 (520)
-.++-|++.++. ++.+...+.. +.|+++++......+.+-++.+|.||...+ .... .++..+
T Consensus 250 l~iWlLSF~~~~----------~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~ 319 (480)
T 1ho8_A 250 LLIWLLTFNPVF----------ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGN 319 (480)
T ss_dssp HHHHHHTTSHHH----------HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHC
T ss_pred HHHHHHHcCHHH----------HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHcc
Confidence 788888886532 2355544433 677888888665667788889999998543 2223 233334
Q ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHHHh-------hCCCchHHHHH------------------------hc--CCH
Q 010019 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKL-------AGSDSNKSAII------------------------EN--GGM 401 (520)
Q Consensus 355 gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L-------a~~~~~k~~Iv------------------------~~--g~l 401 (520)
+ ..+++.|.... -.|.++.+..-.+...| ++.|+-+..+- +. ..+
T Consensus 320 ~-l~~l~~L~~rk-~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~ll 397 (480)
T 1ho8_A 320 A-LPTVQSLSERK-YSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIF 397 (480)
T ss_dssp H-HHHHHHHHSSC-CSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHH
T ss_pred c-hHHHHHHhhCC-CCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHH
Confidence 4 55666665421 12335554433222221 21122222221 11 236
Q ss_pred HHHHHHHhcc--------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 402 DKLIVVSARF--------SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 402 ~~Lv~lL~~~--------~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
..|+++|... +.++.+..-||-=|..++...|+-+..+-+.|+=+.++++|. | .+++|+++|-.++.-+.
T Consensus 398 k~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~-h-~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 398 RQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN-H-SDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS-C-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc-C-CCHHHHHHHHHHHHHHH
Confidence 8899999732 347888999999999999989988888888899888888884 5 58999999999988775
Q ss_pred hhC
Q 010019 474 ARN 476 (520)
Q Consensus 474 ~~~ 476 (520)
.++
T Consensus 476 ~~~ 478 (480)
T 1ho8_A 476 GYT 478 (480)
T ss_dssp HHS
T ss_pred Hhc
Confidence 543
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.33 E-value=0.003 Score=59.62 Aligned_cols=183 Identities=7% Similarity=0.091 Sum_probs=130.3
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhH-HhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (520)
.+..|..+|.. .|+.+...++.+|--++.+-+..... .-....+.++++++ +.+..+...|++++..+..+.+-
T Consensus 34 ~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 34 ALFLILELAGE---DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCCC
Confidence 56678888865 47888888888887777553222222 22456788888885 56789999999999998877766
Q ss_pred hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (520)
Q Consensus 253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~ 332 (520)
....+.+ ++..|.+++.++.+-....|+..|..|..-...+ +.+..|..++ .+.|+.++..
T Consensus 109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~----------------~V~~~l~sLl-~Skd~~vK~a 169 (265)
T 3b2a_A 109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK----------------LVRTYINELV-VSPDLYTKVA 169 (265)
T ss_dssp CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH----------------HHHHHHHHHH-TCSSHHHHHH
T ss_pred CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH----------------HHHHHHHHHH-hCCChhHHHH
Confidence 6777765 5678888888766666677999999884333211 2467888888 4468899999
Q ss_pred HHHHHHHhccC---hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC
Q 010019 333 ASIALKAVAVN---DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD 389 (520)
Q Consensus 333 a~~aL~~La~~---~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~ 389 (520)
+..+|.+++.. .++...|+ .-+-.+|+. .|+.+++-|+.+|-.+.+.+
T Consensus 170 gl~~L~eia~~S~D~~i~~~I~-----~eI~elL~~----eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 170 GFCLFLNMLNSSADSGHLTLIL-----DEIPSLLQN----DNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHGGGCSSCCCGGGTT-----TTHHHHHTC----SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcccCCHHHHHHHH-----HHHHHHHcC----CCHHHHHHHHHHHHHHHcCc
Confidence 99999999853 23333333 234456664 24689999999999998764
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.22 E-value=0.05 Score=61.55 Aligned_cols=279 Identities=13% Similarity=0.127 Sum_probs=161.9
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC---C---ChHHHHHHHHHHHHHh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---E---DPEILNSGFAVVAASA 247 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~---~~~v~~~a~~~L~~~~ 247 (520)
++..|-..|.....++..+...|+-+|..+..+.. .+ .+..|.+.|.+.+ . .+.++..|+..|+.+.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 34444444432111355666667777665543321 11 3566777776432 1 1456666777777764
Q ss_pred cCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCCh
Q 010019 248 TGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS 327 (520)
Q Consensus 248 ~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~ 327 (520)
.... ++ .+++.|+.+|...+......|+.+|.-+-.+..+ ..++..|+..+.+..+.
T Consensus 466 ~GS~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn----------------~~ai~~LL~~~~e~~~e 522 (963)
T 4ady_A 466 MGSA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK----------------PEAIHDMFTYSQETQHG 522 (963)
T ss_dssp TTCC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC----------------HHHHHHHHHHHHHCSCH
T ss_pred cCCC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC----------------HHHHHHHHHHHhccCcH
Confidence 4321 22 2456788888765433333566666644222211 11356677766654456
Q ss_pred hHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHh-hCCCchHHHHHhcCCHHHHH
Q 010019 328 PSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL-AGSDSNKSAIIENGGMDKLI 405 (520)
Q Consensus 328 ~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L-a~~~~~k~~Iv~~g~l~~Lv 405 (520)
.+.+.++.+|+-+. .+++ .++.+++.|... + ++-+...++-+++-- ++... .. +++.|+
T Consensus 523 ~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~-~--dp~vRygaa~alglAyaGTGn-~~------aIq~LL 583 (963)
T 4ady_A 523 NITRGLAVGLALINYGRQE---------LADDLITKMLAS-D--ESLLRYGGAFTIALAYAGTGN-NS------AVKRLL 583 (963)
T ss_dssp HHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHC-S--CHHHHHHHHHHHHHHTTTSCC-HH------HHHHHH
T ss_pred HHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhC-C--CHHHHHHHHHHHHHHhcCCCC-HH------HHHHHH
Confidence 78888899998876 3333 356777788753 2 245555555555432 33332 22 355666
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019 406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 406 ~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~ 485 (520)
+.+..+ .+..|+..|+.+|..++.++++. ++.++..|.. ..++.|.+.|++||..+.++++..
T Consensus 584 ~~~~~d-~~d~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~-~~d~~VR~gAalALGli~aGn~~~------ 646 (963)
T 4ady_A 584 HVAVSD-SNDDVRRAAVIALGFVLLRDYTT---------VPRIVQLLSK-SHNAHVRCGTAFALGIACAGKGLQ------ 646 (963)
T ss_dssp HHHHHC-SCHHHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGG-CSCHHHHHHHHHHHHHHTSSSCCH------
T ss_pred HHhccC-CcHHHHHHHHHHHHhhccCCHHH---------HHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCCcH------
Confidence 666543 46789999999999998887643 4455555544 468999999999999997766532
Q ss_pred CCHHHHHHHHHHh-CcchHHHHHHHHHHcCCCCCC
Q 010019 486 NGVEKLIRQAKEN-HEICKDAATDALRDLGLDDYN 519 (520)
Q Consensus 486 ~G~~~lL~~~~~~-h~~~~~~a~aALr~Lg~~~~n 519 (520)
.+.+.|..+... ...+...|.-||.-+|.-.+|
T Consensus 647 -~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 647 -SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp -HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred -HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 233455444311 123445567777777776665
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.17 E-value=5e-05 Score=65.57 Aligned_cols=120 Identities=8% Similarity=0.017 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc
Q 010019 311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS 390 (520)
Q Consensus 311 ~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~ 390 (520)
...++.|+.+|++ +++.+...++++|..+.. ..++.|+.+|.+ +++.+...++.+|+++..
T Consensus 11 ~~~~~~l~~~L~~-~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d----~~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 11 SSGLVPRGSHMAD-ENKWVRRDVSTALSRMGD-----------EAFEPLLESLSN----EDWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp ----------CCS-SCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGC----SCHHHHHHHHHHHGGGCS---
T ss_pred cccHHHHHHHhcC-CCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcC----CCHHHHHHHHHHHHhcCC---
Confidence 3567888888875 455566667776665531 126788888874 246899999999988753
Q ss_pred hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019 391 NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR 470 (520)
Q Consensus 391 ~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~ 470 (520)
..+++.|+.+|+ .+++.|+..++++|..+.. + ..++.|+.+++. .++.|+..|+++|.
T Consensus 72 -------~~a~~~L~~~L~--d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d--~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -------ERAVEPLIKLLE--DDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAET--GTGFARKVAVNYLE 129 (131)
T ss_dssp -------HHHHHHHHHHHH--HCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTS--CCTHHHHHHHHHGG
T ss_pred -------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 135888999997 5688999999999998862 2 356778888743 57889999998876
Q ss_pred H
Q 010019 471 N 471 (520)
Q Consensus 471 n 471 (520)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 4
No 73
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.11 E-value=0.033 Score=55.42 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=122.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-hcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC
Q 010019 265 LILEILSRQRNDSIQSLYDAIRV-LLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (520)
Q Consensus 265 ~Lv~lL~~~~~~~~~~a~~aL~~-Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~ 343 (520)
.+++-|.+.+....+.+..-|.. +..|. +.+.++++.+|+..|+.....+ +.+.+..++.||.+|...
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~----------~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDK----------DLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF 190 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCT----------THHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcch----------HHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc
Confidence 34455555444555555555655 33333 3456899999999999999765 577899999999999877
Q ss_pred hhhHHHHHh-cCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc-hHHHHHhc-------CC---HHHHHHHHhc-
Q 010019 344 DEICKSVAE-NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS-NKSAIIEN-------GG---MDKLIVVSAR- 410 (520)
Q Consensus 344 ~e~~~~i~~-~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~-~k~~Iv~~-------g~---l~~Lv~lL~~- 410 (520)
..-...++. ...|..+..++.. .+..|++.|+.+|..+....+ +...+.++ .| .+.|+..|++
T Consensus 191 v~Gm~gvvs~~~fI~~lyslv~s----~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~ 266 (339)
T 3dad_A 191 VDGMLGVVAHSDTIQWLYTLCAS----LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK 266 (339)
T ss_dssp HHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT
T ss_pred cccccchhCCHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc
Confidence 555555553 3345566666663 346899999999999986543 44433321 12 6688888853
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCH--HHH----HHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019 411 FSDDASVLQEVMSIITVLSLRSP--ENA----ARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (520)
Q Consensus 411 ~~~~~~v~~~a~~aL~nLa~~~~--~~~----~~i~~~G~i~~lv~~L~~~~~~~~vqk~ 464 (520)
.+.+..++.+++..|-.+-..-| +.. ..+-+.|.-..+.+.|+.+..+++.+++
T Consensus 267 ~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 267 NGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 24689999999988776654333 322 3334456556677778776667776655
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.08 E-value=6.5e-05 Score=64.84 Aligned_cols=119 Identities=8% Similarity=0.019 Sum_probs=79.2
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L 340 (520)
..++.|+.+|++.+..++..|+++|..+-. ..++.|+.+|++ +++.+...++++|+++
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~---------------------~~~~~L~~~L~d-~~~~vR~~A~~aL~~~ 69 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD---------------------EAFEPLLESLSN-EDWRIRGAAAWIIGNF 69 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS---------------------TTHHHHHHGGGC-SCHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc---------------------hHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Confidence 455667777766544555555555543321 136889999885 5788889999999988
Q ss_pred ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHH
Q 010019 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQE 420 (520)
Q Consensus 341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~ 420 (520)
.. ...++.|+.+|.+. ++.|...++.+|+.+.. ..+++.|+.+|+ .+++.|+..
T Consensus 70 ~~----------~~a~~~L~~~L~d~----~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~--d~~~~vr~~ 123 (131)
T 1te4_A 70 QD----------ERAVEPLIKLLEDD----SGFVRSGAARSLEQIGG----------ERVRAAMEKLAE--TGTGFARKV 123 (131)
T ss_dssp CS----------HHHHHHHHHHHHHC----CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT--SCCTHHHHH
T ss_pred CC----------HHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh--CCCHHHHHH
Confidence 52 12378889999752 23899999999998752 245788999997 678899999
Q ss_pred HHHHHHH
Q 010019 421 VMSIITV 427 (520)
Q Consensus 421 a~~aL~n 427 (520)
++.+|..
T Consensus 124 A~~aL~~ 130 (131)
T 1te4_A 124 AVNYLET 130 (131)
T ss_dssp HHHHGGG
T ss_pred HHHHHHh
Confidence 9998864
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.94 E-value=0.02 Score=54.18 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=117.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCC-CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-
Q 010019 265 LILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV- 342 (520)
Q Consensus 265 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~- 342 (520)
.+.+.+.+.+-..+..|...|..+... ..... .. +. ..++.|..+|...++..+...++.+|..|+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~-----~~----~~--~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN-----GE----YG--ALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC-----CC----CH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC-----CC----HH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 466677665447777777777777653 11100 00 11 2366778888523467788899999999983
Q ss_pred -ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHH
Q 010019 343 -NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV 421 (520)
Q Consensus 343 -~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a 421 (520)
.+++...+. -.++.|+..+.+ .+..+...++.+|.+++...... ..++.+...|+ ..++.+++.+
T Consensus 88 l~~~~~~~~~--~ilp~ll~~l~d----~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~--~~~~~vr~~~ 153 (242)
T 2qk2_A 88 LAKRFSNYAS--ACVPSLLEKFKE----KKPNVVTALREAIDAIYASTSLE------AQQESIVESLS--NKNPSVKSET 153 (242)
T ss_dssp HGGGGHHHHH--HHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTT--CSCHHHHHHH
T ss_pred HhhhHHHHHH--HHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHc--CCChHHHHHH
Confidence 222222211 135666666664 24589999999999998654321 24567777787 5689999999
Q ss_pred HHHHHHHhcCC-HHH--HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 422 MSIITVLSLRS-PEN--AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 422 ~~aL~nLa~~~-~~~--~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
+..|..+.... |+. ...+ . ..++.++..|.. .++.|+..|..+|..++.
T Consensus 154 l~~l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 154 ALFIARALTRTQPTALNKKLL-K-LLTTSLVKTLNE--PDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHTS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHH-H-HHHHHHHHHhcC--CChHHHHHHHHHHHHHHH
Confidence 99999965443 431 2222 1 367888888843 678999999999998864
No 76
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.90 E-value=0.061 Score=63.25 Aligned_cols=274 Identities=9% Similarity=0.083 Sum_probs=151.2
Q ss_pred HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH--hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR--TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (520)
Q Consensus 175 ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~--~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (520)
+|.+...|+. .+..+...++..++.++.... ..+. -...++.+++.|.......+++..++.++..++.....
T Consensus 436 l~~l~~~l~~---~~~~vr~~~~~~L~~l~~~~~--~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~ 510 (1230)
T 1u6g_C 436 VKALHKQMKE---KSVKTRQCCFNMLTELVNVLP--GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 510 (1230)
T ss_dssp HHHHHHHTTC---SCHHHHHHHHHHHHHHHHHST--TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHHhcc---CCHHHHHHHHHHHHHHHHHch--hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH
Confidence 3444444554 255565666777766654321 1111 12345667777765433458888888888887643222
Q ss_pred h-HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCcchhhh-hhchHHHHHHHcCCHHHHHHHHhcC-CChh
Q 010019 253 V-KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVAS-QVYGYARRFAKIGIARALVHSLHAG-LSSP 328 (520)
Q Consensus 253 n-r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-dd~~v~~~-~a~~~a~~i~~~g~l~~Lv~lL~~~-~~~~ 328 (520)
. -..+. ...++.|+..+......+...++.++..++.. .......+ ....+.. ..++.++..+... .+.+
T Consensus 511 ~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-----~ll~~ll~~l~~~d~~~~ 584 (1230)
T 1u6g_C 511 QVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK-----DLFTCTIKRLKAADIDQE 584 (1230)
T ss_dssp GGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH-----HHHHHHHHHHSCSSSCHH
T ss_pred HHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH-----HHHHHHHHHHhccCCCHH
Confidence 1 22222 36889999988775556666677777766621 00000000 0001111 2477888888533 3567
Q ss_pred HHHHHHHHHHHhccC--hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc--hHHHHHhcCCHHHH
Q 010019 329 SLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSAIIENGGMDKL 404 (520)
Q Consensus 329 ~~~~a~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~Iv~~g~l~~L 404 (520)
+...++.+|+.|+.. +... .-++.++.+|....... .....++.++..++.+.. .-..+. ...++.|
T Consensus 585 vr~~a~~~lg~L~~~~g~~~~------~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~-~~i~~~L 655 (1230)
T 1u6g_C 585 VKERAISCMGQIICNLGDNLG------SDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVL-GEGVPIL 655 (1230)
T ss_dssp HHHHHHHHHHHHHHHTGGGCC------THHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhh------hhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHH-HHHHHHH
Confidence 888888899888732 2211 12344555544322211 355678888888875421 112222 2456777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhhCh
Q 010019 405 IVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK-----FPNAQQLQRSSCFMIRNLVARNP 477 (520)
Q Consensus 405 v~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~-----~~~~~~vqk~A~~aL~nL~~~~~ 477 (520)
...++ ..+..++.+++.+|..++...++.. ..+.+..++.. ...+..+...+..+|..++...+
T Consensus 656 ~~~l~--~~~~~~r~~a~~al~~l~~~~~~~~-------~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~ 724 (1230)
T 1u6g_C 656 ASFLR--KNQRALKLGTLSALDILIKNYSDSL-------TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 (1230)
T ss_dssp HHHTT--SCCHHHHHHHHHHHHHHHHHCCTTC-------CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHH--hCCHHHHHHHHHHHHHHHhcccccC-------CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCc
Confidence 77776 6789999999999999986443210 11222222211 13566777777778888865444
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.79 E-value=0.0095 Score=56.51 Aligned_cols=181 Identities=10% Similarity=0.111 Sum_probs=114.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh-HHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhcCCCCcchhh
Q 010019 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVV-KESYMELKIDELILEILS-RQRNDSIQSLYDAIRVLLTPDDDQVVA 298 (520)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n-r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~dd~~v~~ 298 (520)
.+.+.+. +.+-+....|+..|..++..++.. ...+ ...++.|...|. ..+..++..|+.+|..|+.. .+..|
T Consensus 19 ~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l~~~~ 92 (242)
T 2qk2_A 19 DFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKG--LAKRF 92 (242)
T ss_dssp THHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HGGGG
T ss_pred HHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--HhhhH
Confidence 4566664 345666677777777765432111 0001 134667777884 55557888899999998842 11111
Q ss_pred hhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019 299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (520)
Q Consensus 299 ~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a 378 (520)
. .+.. ..+|.|+..+.+. +..+...++.+|..+...... .. .++.+...|. +.++.+...+
T Consensus 93 ~---~~~~-----~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-~~-----ll~~l~~~l~----~~~~~vr~~~ 153 (242)
T 2qk2_A 93 S---NYAS-----ACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-EA-----QQESIVESLS----NKNPSVKSET 153 (242)
T ss_dssp H---HHHH-----HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-HH-----HHHHHHHHTT----CSCHHHHHHH
T ss_pred H---HHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-HH-----HHHHHHHHHc----CCChHHHHHH
Confidence 1 1121 2588999988863 467888889999888743211 11 1234444444 3457899999
Q ss_pred HHHHHHhhCC--Cc--hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 379 CSLLSKLAGS--DS--NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 379 l~aL~~La~~--~~--~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
+..|..+... ++ ....+- ..+|.|+.+|. ..++.|+..|..+|..|+.
T Consensus 154 l~~l~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 154 ALFIARALTRTQPTALNKKLLK--LLTTSLVKTLN--EPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHTTCCGGGCCHHHHH--HHHHHHHHHHT--SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHH--HHHHHHHHHhc--CCChHHHHHHHHHHHHHHH
Confidence 9999996533 22 223332 46888999997 6789999999999998884
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.77 E-value=0.045 Score=62.44 Aligned_cols=250 Identities=14% Similarity=0.142 Sum_probs=151.6
Q ss_pred ChHHHHHHHHHHHHHhcCChh--hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH
Q 010019 232 DPEILNSGFAVVAASATGNEV--VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (520)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~--nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~ 309 (520)
+.+-.+.|+.++..+|..... .-+.+. .+.++.+++.+......+...|-.++..+...-.+ + .+
T Consensus 65 ~k~~~~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~---------~--a~- 131 (986)
T 2iw3_A 65 DKKTAANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP---------V--AI- 131 (986)
T ss_dssp SHHHHHHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG---------G--GH-
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH---------H--HH-
Confidence 333337888888888843221 112222 25667777766654445555544444444321111 0 11
Q ss_pred HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chhh-HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC
Q 010019 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG 387 (520)
Q Consensus 310 ~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~-~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~ 387 (520)
...+|.|+..|.....=..+..++.+|..|+. .++. ...+. ..||.+-++|.+. .++|..+|..++..++.
T Consensus 132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~d~----k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP--ELIPVLSETMWDT----KKEVKAAATAAMTKATE 204 (986)
T ss_dssp -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHHHHHHHHTTCS----SHHHHHHHHHHHHHHGG
T ss_pred -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc--chhcchHhhcccC----cHHHHHHHHHHHHHHHh
Confidence 23589999999865433467788888888883 2332 12222 3467777777653 35899999999988886
Q ss_pred CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHH
Q 010019 388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF 467 (520)
Q Consensus 388 ~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~ 467 (520)
.-+|++.- ..+|.|++.|... +-...++-.|+.-++=..-....+ +=.+|.|.+.|.. ....++|+++.
T Consensus 205 ~~~n~d~~---~~~~~~~~~~~~p----~~~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~--~~~~~~r~~~~ 273 (986)
T 2iw3_A 205 TVDNKDIE---RFIPSLIQCIADP----TEVPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNE--RETGIKRKSAV 273 (986)
T ss_dssp GCCCTTTG---GGHHHHHHHHHCT----THHHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTS--SSHHHHHHHHH
T ss_pred cCCCcchh---hhHHHHHHHhcCh----hhhHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhcc--CcchhheeeEE
Confidence 55555422 5689999999832 224445555554433111000000 0135788888854 46778899999
Q ss_pred HHHHHhh--hChhhHHHHHhCCHHHHHHHHHHh--CcchHHHHHHHHHHc
Q 010019 468 MIRNLVA--RNPENRKLLLSNGVEKLIRQAKEN--HEICKDAATDALRDL 513 (520)
Q Consensus 468 aL~nL~~--~~~e~~~~l~~~G~~~lL~~~~~~--h~~~~~~a~aALr~L 513 (520)
.+.||+. .+|.....|+-. ..|-|...... +|+++.+|..|+..|
T Consensus 274 ~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 274 IIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred EEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 9999984 688888888864 33444444444 478999999988776
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.51 E-value=0.34 Score=55.26 Aligned_cols=305 Identities=11% Similarity=0.049 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L 200 (520)
...++.+...+.. .+.++...+...+..+... +...+ ....+.+..|.+.+... .+. ..|+.++
T Consensus 13 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~k--~~~---~~a~~~~ 76 (986)
T 2iw3_A 13 IKVLEELFQKLSV-------ATADNRHEIASEVASFLNG--NIIEH--DVPEHFFGELAKGIKDK--KTA---ANAMQAV 76 (986)
T ss_dssp HHHHHHHHHHHTT-------CCTTTHHHHHHHHHHHHTS--SCSSS--SCCHHHHHHHHHHHTSH--HHH---HHHHHHH
T ss_pred HHHHHHHHhhccc-------cchhHHHHHHHHHHHHHhc--ccccc--ccchhHHHHHHHHHhcc--CCH---HHHHHHH
Confidence 3445566665554 3345566777777777764 21111 11135666777766542 122 6677777
Q ss_pred HHhhcccccch--hHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-ChhhHHHHHhcCCHHHHHHHHhcCCh-H
Q 010019 201 ALLVHDVQSTE--TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILSRQRN-D 276 (520)
Q Consensus 201 a~l~~~~~~~~--~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-~e~nr~~i~~~g~i~~Lv~lL~~~~~-~ 276 (520)
..++......+ +..--+.++.+++.+. .....+...|-.++..++.. ++.. + ..++|.|+..|.+... .
T Consensus 77 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a---~--~~~~~~~~~~~~~~~kw~ 149 (986)
T 2iw3_A 77 AHIANQSNLSPSVEPYIVQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPVA---I--KALLPHLTNAIVETNKWQ 149 (986)
T ss_dssp HHHTCTTTCCTTTHHHHHTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGG---H--HHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhcCCCCCcccchHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHH---H--HHHHHHHHHHhccccchH
Confidence 77764331111 1111134555555543 23455655554444444322 2222 2 3468899999976544 5
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCCh
Q 010019 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI 356 (520)
Q Consensus 277 ~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv 356 (520)
....|+.+|..|+... +. .-+..+. ..||.+.+.|... .+++.+.+..++..++.--+|+.. ..-|
T Consensus 150 ~k~~~l~~~~~~~~~~--~~------~~~~~~~--~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~---~~~~ 215 (986)
T 2iw3_A 150 EKIAILAAFSAMVDAA--KD------QVALRMP--ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI---ERFI 215 (986)
T ss_dssp HHHHHHHHHHHHHHHS--HH------HHHHHHH--HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT---GGGH
T ss_pred HHHHHHHHHHHHHHHh--HH------HHHHhcc--chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch---hhhH
Confidence 5666888888887432 11 0112232 4688888888764 478888888888777632222211 1236
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc--CCHH
Q 010019 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL--RSPE 434 (520)
Q Consensus 357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~--~~~~ 434 (520)
|.|+++|.+. + + +..|.-.|+.-..-.+....... =.+|.|.+-|+ .....+++.++-++-|||. ++|.
T Consensus 216 ~~~~~~~~~p-~----~-~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~--~~~~~~~r~~~~~~~n~~~lv~~~~ 286 (986)
T 2iw3_A 216 PSLIQCIADP-T----E-VPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLN--ERETGIKRKSAVIIDNMCKLVEDPQ 286 (986)
T ss_dssp HHHHHHHHCT-T----H-HHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHT--SSSHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHhcCh-h----h-hHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhc--cCcchhheeeEEEEcchhhhcCCHH
Confidence 8999999973 2 2 45566666554433332222111 13577777776 4578899999999999994 6776
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
-...++- ..+|-+-+..... .+|++...|..|+..|.
T Consensus 287 ~~~~f~~-~l~p~~~~~~~~~-~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 287 VIAPFLG-KLLPGLKSNFATI-ADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHT-TTHHHHHHHTTTC-CSHHHHHHHHHHHHHHH
T ss_pred HHhhhhh-hhhhHHHHHhhcc-CCHHHHHHHHHHHHHHH
Confidence 6666543 3556665555444 68998888888888873
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.25 E-value=0.1 Score=49.21 Aligned_cols=184 Identities=11% Similarity=0.095 Sum_probs=124.9
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh
Q 010019 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297 (520)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~-e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~ 297 (520)
+..+..+|. ..++.++..++.+|..+...- ...+...++ ..++.+++++++.++.+.-.|.++|..|..+-....
T Consensus 35 l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~- 110 (265)
T 3b2a_A 35 LFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS- 110 (265)
T ss_dssp HHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH-
T ss_pred HHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH-
Confidence 345566663 567888888898888876542 223333333 578999999988777777889999999887654322
Q ss_pred hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI 377 (520)
Q Consensus 298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~ 377 (520)
..+.+ .+..|.+++++. +.-....++-.|..|-..... .. .+..+.+++.+ .|..+...
T Consensus 111 --------~~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-~~-----V~~~l~sLl~S----kd~~vK~a 169 (265)
T 3b2a_A 111 --------KTFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-KL-----VRTYINELVVS----PDLYTKVA 169 (265)
T ss_dssp --------HHHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-HH-----HHHHHHHHHTC----SSHHHHHH
T ss_pred --------HHHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-HH-----HHHHHHHHHhC----CChhHHHH
Confidence 13333 467888888853 455667888888888433222 22 24578888833 24689999
Q ss_pred HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010019 378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431 (520)
Q Consensus 378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~ 431 (520)
++.+|.++++..+.+..+ + +.+.-+-.+|+ +.++.+++-|+.+|-.+..+
T Consensus 170 gl~~L~eia~~S~D~~i~-~-~I~~eI~elL~--~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 170 GFCLFLNMLNSSADSGHL-T-LILDEIPSLLQ--NDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHGGGCSSCCCG-G-GTTTTHHHHHT--CSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcccCCHHHH-H-HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHcC
Confidence 999999998643222211 1 23444666787 77999999999999998864
No 81
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.59 E-value=0.26 Score=48.99 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=98.7
Q ss_pred HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (520)
Q Consensus 333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~ 412 (520)
++-.|.-|..+.....-++++.||..+...+.. +|.++++++|.+|-..+....-...=. ..-+|.+++.++.|.
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinY----pN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQY----PNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeec----CCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC
Confidence 333344444555567889999999998888774 345899999999988764432221111 245899999998775
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC-----CCHHHHHHHHHHHHHH
Q 010019 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP-----NAQQLQRSSCFMIRNL 472 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~-----~~~~vqk~A~~aL~nL 472 (520)
+.+|...+.+.|+|...+......-.+..|++.++-..+.+++ .+..-.+-||..++|.
T Consensus 338 -eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 338 -DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp -CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred -CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 6788999999999999877777777788999999998887665 3455566799888886
No 82
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.32 Score=46.45 Aligned_cols=188 Identities=9% Similarity=0.068 Sum_probs=112.9
Q ss_pred HHHHhcCChHHHHHHHHHHHH-hcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc--C
Q 010019 267 LEILSRQRNDSIQSLYDAIRV-LLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--N 343 (520)
Q Consensus 267 v~lL~~~~~~~~~~a~~aL~~-Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~ 343 (520)
.+.+.+..-..+++|...|.. ++.+. .+.... .. .+. ..+..|...|...++..+...+|.+|..|+. .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~-~~----~~~--~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQT-KKLKST-SQ----NYS--NLLGIYGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCT-TC----CCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccC-cc----cHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 445555444666777777887 76431 111000 00 000 2366777778444556677889999999982 2
Q ss_pred -hhhH-HHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC-chHHHH-HhcCCHHHHHHHHhccCCCHHHHH
Q 010019 344 -DEIC-KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-SNKSAI-IENGGMDKLIVVSARFSDDASVLQ 419 (520)
Q Consensus 344 -~e~~-~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~-~~k~~I-v~~g~l~~Lv~lL~~~~~~~~v~~ 419 (520)
+++. ..... .++.+++.+.+ ..+.|++.+..+|..++.+- .....- .+ ..++.|+..|+ +.++.+++
T Consensus 94 ~~~f~~~y~~~--llp~ll~~l~d----kk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~--~k~~~vk~ 164 (249)
T 2qk1_A 94 TPGFSKDYVSL--VFTPLLDRTKE----KKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMK--HKTPQIRM 164 (249)
T ss_dssp TTTSCHHHHHH--HHHHHHHGGGC----CCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTT--CSSHHHHH
T ss_pred cccccHHHHHH--HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHc--CCChHHHH
Confidence 2222 22211 24556665554 23578899999988887421 111000 00 24567777886 56899999
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 420 EVMSIITVLSLRSPE---NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 420 ~a~~aL~nLa~~~~~---~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
.++.+|..++...+. .-...+....++.+.+.|.. .++.|+..|..++..++
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D--~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND--TQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 999999998864432 22222324578899999943 58889888888888875
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.36 E-value=0.29 Score=49.46 Aligned_cols=217 Identities=7% Similarity=0.047 Sum_probs=114.6
Q ss_pred cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (520)
Q Consensus 174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (520)
++..|..=|.+ +++-+...|+.+|+.+.... +++ ...+.+.+.|. +.++-+...|+-++..++...++
T Consensus 105 v~Nsl~kDl~~---~N~~iR~lALRtL~~I~~~~-----m~~-~l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe- 172 (355)
T 3tjz_B 105 VTSSLTKDMTG---KEDSYRGPAVRALCQITDST-----MLQ-AIERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFD- 172 (355)
T ss_dssp GHHHHHHHHHS---SCHHHHHHHHHHHHHHCCTT-----THH-HHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHH-
T ss_pred HHHHHHhhcCC---CcHhHHHHHHHHHhcCCCHH-----HHH-HHHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHH-
Confidence 34455554544 46777889999999987432 111 12234444554 45788988998888888765543
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC--ChhHHH
Q 010019 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLI 331 (520)
Q Consensus 254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~--~~~~~~ 331 (520)
.+ + +.++.+-+++.+.+..++-+|..+|..++..|. . .+..|+..+..+. ++-.+.
T Consensus 173 --~v-~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~----------------a~~kLv~~l~~~~l~~~~~q~ 230 (355)
T 3tjz_B 173 --VV-K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L----------------AVSKMISKFTRHGLKSPFAYC 230 (355)
T ss_dssp --HH-H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H----------------HHHHHHHHHHSSCCSCHHHHH
T ss_pred --HH-H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H----------------HHHHHHHHHhcCCCcChHHHH
Confidence 32 3 678888888887666777788888888876541 1 2344555555532 333333
Q ss_pred HHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019 332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411 (520)
Q Consensus 332 ~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~ 411 (520)
.....+..+...++ .+--..+++++.....+.+..|+-+|+.+|..|...+. .+. ..++..|..+|.
T Consensus 231 ~llr~l~~~~~~d~-------~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~~~-~~a~~~L~~fLs-- 297 (355)
T 3tjz_B 231 MMIRVASRQLEDED-------GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---KEL-APAVSVLQLFCS-- 297 (355)
T ss_dssp HHHHHHTCC------------------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHH--
T ss_pred HHHHHHHHhccccc-------hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---HHH-HHHHHHHHHHHc--
Confidence 33333334432221 01112334444433333456899999999988865322 122 245667777787
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHH
Q 010019 412 SDDASVLQEVMSIITVLSLRSPENAA 437 (520)
Q Consensus 412 ~~~~~v~~~a~~aL~nLa~~~~~~~~ 437 (520)
+.++.++-.|+..|..+...+|+..+
T Consensus 298 s~d~niryvaLr~L~~l~~~~P~~v~ 323 (355)
T 3tjz_B 298 SPKAALRYAAVRTLNKVAMKHPSAVT 323 (355)
T ss_dssp SSSSSSHHHHHHCC------------
T ss_pred CCCchHHHHHHHHHHHHHHHCcHHHH
Confidence 67889999999999999887775543
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.27 E-value=1.7 Score=39.57 Aligned_cols=197 Identities=12% Similarity=0.174 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (520)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g 312 (520)
.++..|+..+..++...++.-+.+ +..|+-+++.... +..+..++++..++.. ++ .++. +
T Consensus 47 tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~P----------e~v~-~ 107 (253)
T 2db0_A 47 TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KP----------ELVK-S 107 (253)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CH----------HHHH-H
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh---CH----------HHHH-h
Confidence 467788888888776555443333 3456656665433 7778888888888753 23 3332 3
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch
Q 010019 313 IARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN 391 (520)
Q Consensus 313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~ 391 (520)
.+|.|..=.+-+ |+.++.+...+|..++ .|++.-..++ +-+..++.+ ++. .=.-.++..+..|. +|
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smlts-kd~---~Dkl~aLnFi~alG---en 174 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSS-KNR---EDKLTALNFIEAMG---EN 174 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTSC-SSH---HHHHHHHHHHHTCC---TT
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhcC-CCh---HHHHHHHHHHHHHh---cc
Confidence 567777666655 7788899999999999 6787665555 456667763 222 22334555555444 33
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010019 392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471 (520)
Q Consensus 392 k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~n 471 (520)
...-+. -.+|.|..+|. .++.-|+..++-+|.+|+.-+|..++.+. ..++-|.. .+..|++..--+|.-
T Consensus 175 ~~~yv~-PfLprL~aLL~--D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D--~S~lv~~~V~egL~r 243 (253)
T 2db0_A 175 SFKYVN-PFLPRIINLLH--DGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND--TSSLVNKTVKEGISR 243 (253)
T ss_dssp THHHHG-GGHHHHHGGGG--CSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCC--SCHHHHHHHHHHHHH
T ss_pred CccccC-cchHHHHHHHc--CcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcC--cHHHHHHHHHHHHHH
Confidence 333332 46899999997 77999999999999999999988665543 22333322 345577776666666
Q ss_pred Hh
Q 010019 472 LV 473 (520)
Q Consensus 472 L~ 473 (520)
++
T Consensus 244 l~ 245 (253)
T 2db0_A 244 LL 245 (253)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 85
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.21 Score=47.75 Aligned_cols=191 Identities=8% Similarity=0.090 Sum_probs=109.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH-HhcCChhhHHHHHh-cCCHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCcc-hh
Q 010019 222 LVNILIDGNEDPEILNSGFAVVAA-SATGNEVVKESYME-LKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQ-VV 297 (520)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~-~~~~~e~nr~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~dd~~-v~ 297 (520)
+.+.|. +.+-+....++..|.. ++..+......-.+ ...+..|...|... +..++..|+.+|..|+.+= + ..
T Consensus 21 f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l--~~~~ 96 (249)
T 2qk1_A 21 FQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL--KTPG 96 (249)
T ss_dssp HHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--CTTT
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc--cccc
Confidence 334443 3455666677777877 65332211000001 12456777777433 3367778999999988421 1 11
Q ss_pred hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHH
Q 010019 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR 376 (520)
Q Consensus 298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~ 376 (520)
|.. .|... .+|++++.+++. ...++..+..+|-.++. .+. +...+-++.+++-|-....+.++.+..
T Consensus 97 f~~--~y~~~-----llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~----~~~~~~l~~ll~~l~~~l~~k~~~vk~ 164 (249)
T 2qk1_A 97 FSK--DYVSL-----VFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP----LASSGRNEDMLKDILEHMKHKTPQIRM 164 (249)
T ss_dssp SCH--HHHHH-----HHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT----TCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred ccH--HHHHH-----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc----cccCCcHHHHHHHHHHHHcCCChHHHH
Confidence 110 12222 478999988764 35677777777777763 111 111111333333332222234578999
Q ss_pred HHHHHHHHhhCC-Cch-HH--HHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 377 ICCSLLSKLAGS-DSN-KS--AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 377 ~al~aL~~La~~-~~~-k~--~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
.++.+|..++.. +.. .. .-+.-..+|.|..+|. ..++.|++.|..+|..++.
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 999999999733 221 11 1221256899999997 6689999999999998873
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.00 E-value=1.8 Score=39.43 Aligned_cols=186 Identities=14% Similarity=0.154 Sum_probs=120.6
Q ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010019 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (520)
Q Consensus 262 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La 341 (520)
.+..++.+|...-=.++.||...+..++..-. .+.+ -.+..|+-+++....-+.-...+.+++.++
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-------------el~e-pl~~kL~vm~~ksEaIpltqeIa~a~G~la 98 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-------------DLYE-PMLKKLFSLLKKSEAIPLTQEIAKAFGQMA 98 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-------------GGHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-------------HHHH-HHHHHHHHHHhhcccCchHHHHHHHHhHHH
Confidence 45667777754222688999999998875321 1111 235556666666443345577888999998
Q ss_pred -cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019 342 -VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQ 419 (520)
Q Consensus 342 -~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~ 419 (520)
.+++....++ |.+..=.+ -+++.+.-....+|..++ .+|+.-..| +.-+..++. +.+..=+-
T Consensus 99 ~i~Pe~v~~vV-----p~lfanyr----igd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt--skd~~Dkl 162 (253)
T 2db0_A 99 KEKPELVKSMI-----PVLFANYR----IGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS--SKNREDKL 162 (253)
T ss_dssp HHCHHHHHHHH-----HHHHHHSC----CCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS--CSSHHHHH
T ss_pred HhCHHHHHhhH-----HHHHHHHh----cCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc--CCChHHHH
Confidence 6777654443 33333222 345678888888998888 456544433 446777887 66655566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019 420 EVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL 484 (520)
Q Consensus 420 ~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~ 484 (520)
.++..|..|...++... .-.++.+..+| |.++.-|...|.-+|-|++..+|..|+.+.
T Consensus 163 ~aLnFi~alGen~~~yv-----~PfLprL~aLL--~D~deiVRaSaVEtL~~lA~~npklRkii~ 220 (253)
T 2db0_A 163 TALNFIEAMGENSFKYV-----NPFLPRIINLL--HDGDEIVRASAVEALVHLATLNDKLRKVVI 220 (253)
T ss_dssp HHHHHHHTCCTTTHHHH-----GGGHHHHHGGG--GCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhccCcccc-----CcchHHHHHHH--cCcchhhhHHHHHHHHHHHHcCHHHHHHHH
Confidence 67777776665443332 23467888777 557888888899999999888888776544
No 87
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.68 E-value=1 Score=42.47 Aligned_cols=149 Identities=12% Similarity=0.207 Sum_probs=99.4
Q ss_pred hhhHHHHHhcCChHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccCCCH
Q 010019 344 DEICKSVAENGGIDALLRCIDDSGL-------QGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDA 415 (520)
Q Consensus 344 ~e~~~~i~~~Ggv~~Ll~lL~~~~~-------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~~~~ 415 (520)
.+..+.+ ..||+..|+.+|..... ..+...+..++.+|+.|..+..+...+.+. +++..|...|. +.++
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~--s~~~ 110 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVP 110 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC--TTSH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC--CCCc
Confidence 3566777 57899999999875321 114578899999999999887777777654 56788888886 7789
Q ss_pred HHHHHHHHHHHHHhcCCH-HH-HHHHHh----------cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh------
Q 010019 416 SVLQEVMSIITVLSLRSP-EN-AARAME----------AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP------ 477 (520)
Q Consensus 416 ~v~~~a~~aL~nLa~~~~-~~-~~~i~~----------~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~------ 477 (520)
.++..++..|+.+|.-.. +. ...+.+ ..-...+++.++. .++.+. +.+|+.+-|..-.++
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~-~~~~e~-~~~~m~lIN~li~~~~dl~~R 188 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS-GTSIAL-KVGCLQLINALITPAEELDFR 188 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST-TSCHHH-HHHHHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc-CChHHH-HHHHHHHHHHHHCCCCCHHHH
Confidence 999999999999987432 11 222211 1123345555533 234444 456777667654433
Q ss_pred -hhHHHHHhCCHHHHHHHHHH
Q 010019 478 -ENRKLLLSNGVEKLIRQAKE 497 (520)
Q Consensus 478 -e~~~~l~~~G~~~lL~~~~~ 497 (520)
..|..|...|..+++..+..
T Consensus 189 ~~lR~ef~~~Gl~~il~~l~~ 209 (233)
T 2f31_A 189 VHIRSELMRLGLHQVLQELRE 209 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHCChHHHHHHHhc
Confidence 23567778899999987764
No 88
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.48 E-value=4.7 Score=46.39 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=62.7
Q ss_pred CcHHHHHHHHHHHHHhhCCCch---HHHHHhcCCHHHHHHHHhccC---CCHHHHHHHHHHHHHHhc---CCHHHHHHHH
Q 010019 370 GNKTVARICCSLLSKLAGSDSN---KSAIIENGGMDKLIVVSARFS---DDASVLQEVMSIITVLSL---RSPENAARAM 440 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~~---k~~Iv~~g~l~~Lv~lL~~~~---~~~~v~~~a~~aL~nLa~---~~~~~~~~i~ 440 (520)
.+....+++|.+++.+++.... +..+. ..++.|+.++.... ..+.++..+||+|...+. ++++.-..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-- 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-- 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH--
Confidence 4578999999999999976532 22233 46888888886311 123455678899886552 23433222
Q ss_pred hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
.+..+++.| +.++++||..|||++.+++.
T Consensus 541 ---vl~~L~~~l--~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 541 ---VILKLFEFM--HETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp ---HHHHHHHHT--TCSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHh--hcCCHHHHHHHHHHHHHHHH
Confidence 233344444 44578999999999999975
No 89
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.92 E-value=0.2 Score=49.80 Aligned_cols=124 Identities=11% Similarity=0.122 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHH
Q 010019 373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM 452 (520)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L 452 (520)
.|+..+..+|..|....+.-+-+++.+|+..+...++ ..+..+.+.+|..|...+. ....+..= -...++.+++.+
T Consensus 258 QVvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~Tvin--YpN~~l~RaG~KLLLQVSD-aksL~~t~-L~e~LPFi~~~i 333 (619)
T 3c2g_A 258 QVIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQ--YPNNDLIRAGCKLLLQVSD-AKALAKTP-LENILPFLLRLI 333 (619)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHTT-CGGGGTSC-CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccceeecccceeEEEEee--cCCcHHHHhhhheeeeecc-hHHHhhcc-ccccchHHHHHh
Confidence 3556666666555544444456899999999999998 5688999999999988763 22211111 134678999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcc
Q 010019 453 LKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEI 501 (520)
Q Consensus 453 ~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~ 501 (520)
..|++ .+|...+...|.|.+++.....+.-+..|+..+|.....+++.
T Consensus 334 ~~h~e-DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~ 381 (619)
T 3c2g_A 334 EIHPD-DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPR 381 (619)
T ss_dssp HHCCC-HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCC
T ss_pred ccCCC-cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCC
Confidence 99964 5677899999999999888888888899999999999988863
No 90
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.88 E-value=1.7 Score=41.43 Aligned_cols=178 Identities=12% Similarity=0.186 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh----HHHH-HHHHHHHHhcCCCCcchhhhhhchHHHHHHH
Q 010019 236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (520)
Q Consensus 236 ~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~----~~~~-~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~ 310 (520)
.+.++..+..+|+ |++.|..|++++..--|-..|+..+. +.++ ...++++.|...||..+ ..-+.+
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV--------i~fLL~ 143 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV--------INFLLT 143 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHH--------HHHHHh
Confidence 3566666777765 78899999999998888899987643 4444 47889999998777544 224457
Q ss_pred cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHh----cCCh-HHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010019 311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE----NGGI-DALLRCIDDSGLQGNKTVARICCSLLSKL 385 (520)
Q Consensus 311 ~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~----~Ggv-~~Ll~lL~~~~~~~~~~v~~~al~aL~~L 385 (520)
.+.+|..+..|+.|++ -.+.-|...+..+..++.--..+.. --.| ..|-.+...-.+.+++.+.+..+++--.|
T Consensus 144 tEiiplCLrime~Gse-lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 144 TEIIPLCLRIMESGSE-LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp TTHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccH-HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 7899999999998863 2233344444444433332111111 0001 12222222222334578999999999999
Q ss_pred hCCCchHHHHHhcCCHH------HHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019 386 AGSDSNKSAIIENGGMD------KLIVVSARFSDDASVLQEVMSIITVL 428 (520)
Q Consensus 386 a~~~~~k~~Iv~~g~l~------~Lv~lL~~~~~~~~v~~~a~~aL~nL 428 (520)
+.++..++++.+. +| .+-..++ +++..+++-...+.|+
T Consensus 223 sdn~rar~aL~~~--LP~~Lrd~tf~~~l~---~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 223 SDNPRAREALRQC--LPDQLKDTTFAQVLK---DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp TTSHHHHHHHHHH--SCGGGTSSTTHHHHT---SCHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHh--CcHHhhChHHHHHHh---cCHHHHHHHHHHHHhc
Confidence 9999988888652 22 1223332 4777777766666654
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.55 E-value=10 Score=43.08 Aligned_cols=327 Identities=10% Similarity=0.007 Sum_probs=154.1
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCC----CChhhHHHH--HhcCcHHHHHHHHhhc----cc--Cc-
Q 010019 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN----EGSVNAAVA--TKNGGVELVCSICYKM----RC--GS- 189 (520)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~----~~~~~r~~i--~~~Gaip~Lv~lL~~~----~~--~~- 189 (520)
.+..|.+.+.+ ++...+..++..|..+|++- .+++.+..+ .-....|.++.++... .. .+
T Consensus 124 ll~~L~~~l~s-------~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~ 196 (960)
T 1wa5_C 124 LLSDLASRLSN-------DDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196 (960)
T ss_dssp HHHHHHTTCCS-------SCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--C
T ss_pred HHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 45666666554 45556777888888888741 122222211 1123356666655321 00 11
Q ss_pred H------HHHHHHHHHHHHhhcccccchhHHhc---CCcHHHHHHHhcCC----CC---------hHHHHHHHHHHHHHh
Q 010019 190 K------RVLDSCLKTMALLVHDVQSTETFRTG---GGPKLLVNILIDGN----ED---------PEILNSGFAVVAASA 247 (520)
Q Consensus 190 ~------~~~~~al~~La~l~~~~~~~~~i~~~---ggi~~Lv~lL~~~~----~~---------~~v~~~a~~~L~~~~ 247 (520)
. ..+..+++.+..+.... .+..... .-++.+..+|.... .+ .++..+++.++..++
T Consensus 197 ~~~~~~~~~~~~~~k~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~ 274 (960)
T 1wa5_C 197 ASLNILFDVLLVLIKLYYDFNCQD--IPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYT 274 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSC--CCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHH
Confidence 1 11223444444433111 1222221 12345566664311 00 135566777777666
Q ss_pred cCChhhHHHHHhcCCHHHHHHHHhcC-----ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019 248 TGNEVVKESYMELKIDELILEILSRQ-----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH 322 (520)
Q Consensus 248 ~~~e~nr~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~ 322 (520)
..+...-...+ ...++..+.++... .+.+...++..+..++.....+..|. ..++...+++ +.++..|.
T Consensus 275 ~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~-~~~~l~~li~----~~i~~~m~ 348 (960)
T 1wa5_C 275 TRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFN-NESAMNNITE----QIILPNVT 348 (960)
T ss_dssp HHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGC-SHHHHHHHHH----HTHHHHHS
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHc-CchHHHHHHH----HHhHHhcC
Confidence 54432211111 13455666666531 23666778888877765332221110 0122333332 12222221
Q ss_pred c---------------------CCC-hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC--CCCcHHHHHHH
Q 010019 323 A---------------------GLS-SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG--LQGNKTVARIC 378 (520)
Q Consensus 323 ~---------------------~~~-~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~--~~~~~~v~~~a 378 (520)
- ..+ ......+..+|..|+..-. +.++. -.++.+...+..+. ...+....+.|
T Consensus 349 ~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaa 425 (960)
T 1wa5_C 349 LREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLY 425 (960)
T ss_dssp CCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC----CHHHHHHH
T ss_pred CCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 0 011 1234455666666663221 12211 01233333444211 12345788899
Q ss_pred HHHHHHhhCCCchHHHHHhc-----CCHH----HHHHHHhcc-CCCHHHHHHHHHHHHHHhcC-CHHHHHHHHhcCcHHH
Q 010019 379 CSLLSKLAGSDSNKSAIIEN-----GGMD----KLIVVSARF-SDDASVLQEVMSIITVLSLR-SPENAARAMEAGSGDL 447 (520)
Q Consensus 379 l~aL~~La~~~~~k~~Iv~~-----g~l~----~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~-~~~~~~~i~~~G~i~~ 447 (520)
+.+++.++.....+..-... ...+ .++..|... ..++.++..+||+|..++.. .++.. ...++.
T Consensus 426 l~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l-----~~~l~~ 500 (960)
T 1wa5_C 426 IYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-----IELMPI 500 (960)
T ss_dssp HHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH-----HHHHHH
T ss_pred HHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH-----HHHHHH
Confidence 99999998432111000000 1111 233334421 12899999999999998853 22222 224566
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 448 AIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 448 lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
+++.|.. .+..|+..||+||.+++.
T Consensus 501 l~~~L~d--~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 501 LATFLQT--DEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHTTC--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCC--CChhHHHHHHHHHHHHHh
Confidence 7777742 478999999999999975
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.21 E-value=2.4 Score=42.70 Aligned_cols=139 Identities=10% Similarity=-0.036 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHH
Q 010019 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS 393 (520)
Q Consensus 314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~ 393 (520)
.+.+++++.+ +|...++-+..++..++..++-. + =++..+.+=|.+ +|+-+.-.|+++|+++...+ .-+
T Consensus 70 f~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~----~N~~iR~lALRtL~~I~~~~-m~~ 138 (355)
T 3tjz_B 70 FFAMTKLFQS-NDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTG----KEDSYRGPAVRALCQITDST-MLQ 138 (355)
T ss_dssp HHHHHGGGGC-CCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHS----SCHHHHHHHHHHHHHHCCTT-THH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCC----CcHhHHHHHHHHHhcCCCHH-HHH
Confidence 4556667765 46667777777777777432211 1 112334433443 34577788888888886433 222
Q ss_pred HHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019 394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 394 ~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~ 473 (520)
. ..+.+.+.|. ..+|.|++.|+.+...|...+|+..+ +.++.+.+++.. .++.|+-+|..++..+.
T Consensus 139 ~-----l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d--~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 139 A-----IERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASS--DNIMVQYHALGLLYHVR 204 (355)
T ss_dssp H-----HHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTC--SSHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcC--CCccHHHHHHHHHHHHH
Confidence 2 3345666776 67899999999999999887777543 567777777743 67888888888888885
Q ss_pred hhCh
Q 010019 474 ARNP 477 (520)
Q Consensus 474 ~~~~ 477 (520)
..++
T Consensus 205 ~~d~ 208 (355)
T 3tjz_B 205 KNDR 208 (355)
T ss_dssp TTCH
T ss_pred hhch
Confidence 4444
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.09 E-value=14 Score=41.74 Aligned_cols=145 Identities=13% Similarity=0.007 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC-CCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHH
Q 010019 328 PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG-LQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLI 405 (520)
Q Consensus 328 ~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~-~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv 405 (520)
..++.++.+|+.++..-... ....++.++.++...+ ++.++.|...+|.+|+.++.. ..+...+- ..++.|+
T Consensus 479 ~~~eaal~~l~~iae~~~~~----~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~ 552 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGE----EKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLV 552 (971)
T ss_dssp HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHH
Confidence 45677888899887421110 0133455666554333 112468999999999999832 11111111 2355566
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhC-hhhHHHHH
Q 010019 406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN-PENRKLLL 484 (520)
Q Consensus 406 ~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~-~e~~~~l~ 484 (520)
..|. +.|+..||++|.++|....+...... ...+..+.+++....-+...+..+..+|..++... ++......
T Consensus 553 ~~l~-----~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 553 RGLN-----SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHH-----SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHhC-----hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6552 67899999999999954333222221 23445556666653345677778888888886532 24444433
No 94
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.06 E-value=3 Score=42.41 Aligned_cols=148 Identities=11% Similarity=0.192 Sum_probs=98.7
Q ss_pred hhhHHHHHhcCChHHHHHHHhccC-------CCCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccCCCH
Q 010019 344 DEICKSVAENGGIDALLRCIDDSG-------LQGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDA 415 (520)
Q Consensus 344 ~e~~~~i~~~Ggv~~Ll~lL~~~~-------~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~~~~ 415 (520)
.+..+.++ .+|+..|+++|.... ...+......++.+|+.|..+..+...+.+. .++..|+..|. +..+
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~--s~~~ 176 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVP 176 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC--TTSH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC--CCch
Confidence 35567776 789999999986421 1123578899999999999887777776654 45788888887 7789
Q ss_pred HHHHHHHHHHHHHhcCCH-HH-HHHHHh----------cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh------
Q 010019 416 SVLQEVMSIITVLSLRSP-EN-AARAME----------AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP------ 477 (520)
Q Consensus 416 ~v~~~a~~aL~nLa~~~~-~~-~~~i~~----------~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~------ 477 (520)
.++..++-.|+.+|.-.. ++ ...+++ ..-...++..|+.. .+.+.+ .+|+.+-|..-.++
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~-~~~m~lIN~li~~~~dl~~R 254 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALK-VGCLQLINALITPAEELDFR 254 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHH-HHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHH-HHHHHHHHHHHcCCCCHHHH
Confidence 999999999999997442 32 222221 12244555555432 455553 56666666644332
Q ss_pred -hhHHHHHhCCHHHHHHHHH
Q 010019 478 -ENRKLLLSNGVEKLIRQAK 496 (520)
Q Consensus 478 -e~~~~l~~~G~~~lL~~~~ 496 (520)
..+..|...|+.+++..+.
T Consensus 255 ~~lR~ef~~~Gl~~il~~lr 274 (383)
T 3eg5_B 255 VHIRSELMRLGLHQVLQELR 274 (383)
T ss_dssp HHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHCChHHHHHHHh
Confidence 2356677889999998743
No 95
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.99 E-value=1.7 Score=49.41 Aligned_cols=216 Identities=10% Similarity=0.054 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019 192 VLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (520)
Q Consensus 192 ~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~ 268 (520)
....++.++.++..+-.. .. ...++.++.++..-. .++.+...++++++..+..-..+.+.+ ..+++.|+.
T Consensus 480 ~~eaal~~l~~iae~~~~--~~--~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~ 553 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGG--EE--KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVR 553 (971)
T ss_dssp HHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCh--hh--hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHH
Confidence 455666677776543211 00 133455666553322 268889999999988764211122211 135666777
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH--cCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhcc--C
Q 010019 269 ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGL-SSPSLISASIALKAVAV--N 343 (520)
Q Consensus 269 lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~--~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~--~ 343 (520)
.|. ..+...||++|.+|+..- +. .+.- ...+..|..++.+.. +...+..+..++..++. .
T Consensus 554 ~l~---~~v~~~A~~al~~l~~~~--~~----------~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 554 GLN---SSMSAQATLGLKELCRDC--QL----------QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHH---SSCHHHHHHHHHHHHHHC--HH----------HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HhC---hHHHHHHHHHHHHHHHHH--HH----------hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 773 467788999999999432 21 2221 134566667777643 45666777777777763 2
Q ss_pred hhhHHHHHhcCChHHHHHHHhccCCCC--cH---HHHHHHHHHHHHhhCC--C---c---------hHHHHHhcCCHHHH
Q 010019 344 DEICKSVAENGGIDALLRCIDDSGLQG--NK---TVARICCSLLSKLAGS--D---S---------NKSAIIENGGMDKL 404 (520)
Q Consensus 344 ~e~~~~i~~~Ggv~~Ll~lL~~~~~~~--~~---~v~~~al~aL~~La~~--~---~---------~k~~Iv~~g~l~~L 404 (520)
.+.+....+ ..+++++..+....+.. +. .-...++..|+.+... + + .-..+ ....++.+
T Consensus 619 ~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l 696 (971)
T 2x1g_F 619 PEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIF 696 (971)
T ss_dssp TTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHH
Confidence 233333222 12345555443221111 11 2233444444444211 0 0 11112 23578888
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 405 IVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 405 v~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
..++..+..++.+.+.+|+++..++.
T Consensus 697 ~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 697 KRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHH
Confidence 88888776788999999999998764
No 96
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.52 E-value=3.6 Score=41.82 Aligned_cols=147 Identities=12% Similarity=0.210 Sum_probs=98.6
Q ss_pred hhHHHHHhcCChHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccCCCHH
Q 010019 345 EICKSVAENGGIDALLRCIDDSGL-------QGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDAS 416 (520)
Q Consensus 345 e~~~~i~~~Ggv~~Ll~lL~~~~~-------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~~~~~ 416 (520)
+..+.+. .+|+..|+.+|..... ..+......++.+|+.|..+..+...+... +++..|...|. +.++.
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~--s~~~~ 115 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN 115 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC--TTSHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC--CCCch
Confidence 5566675 6889999998864311 114578899999999999887777766554 56888888886 77899
Q ss_pred HHHHHHHHHHHHhcCCH-HH-HHHHH----------hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh------
Q 010019 417 VLQEVMSIITVLSLRSP-EN-AARAM----------EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE------ 478 (520)
Q Consensus 417 v~~~a~~aL~nLa~~~~-~~-~~~i~----------~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e------ 478 (520)
++..++..|..+|.-.. +- ...++ +..-...+++.+..+ .+... +.+|+.+-|..-.+++
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~-~~a~m~lIN~lv~~~~dl~~R~ 193 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIAL-KVGCLQLINALITPAEELDFRV 193 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHH-HHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHH-HHHHHHHHHHHHCCCCCHHHHH
Confidence 99999999999987432 11 22221 112234566666433 34454 4567766666544333
Q ss_pred -hHHHHHhCCHHHHHHHHH
Q 010019 479 -NRKLLLSNGVEKLIRQAK 496 (520)
Q Consensus 479 -~~~~l~~~G~~~lL~~~~ 496 (520)
.|..|...|+.++|..+.
T Consensus 194 ~LR~Ef~~~GL~~il~~Lr 212 (386)
T 2bnx_A 194 HIRSELMRLGLHQVLQELR 212 (386)
T ss_dssp HHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHCChHHHHHHHh
Confidence 467778899999997664
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.95 E-value=19 Score=40.50 Aligned_cols=221 Identities=12% Similarity=0.052 Sum_probs=119.3
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHH
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN-EDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~-~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv 267 (520)
+-.....++.+++++..+-.... ..-++.++..|..-. +++.+...++++++..+..-..+.+ +. ..+++.|+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~ 535 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVL 535 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHH
Confidence 33445556666666653321100 122345555553322 4678888999999887642122222 22 26888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhcc-C-h
Q 010019 268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAV-N-D 344 (520)
Q Consensus 268 ~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~-~-~ 344 (520)
..|.. ..++..||++|.+++.+- +..+. .|... .+..|..++.... +...+..+..+++.++. - .
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~--~~~l~---p~~~~-----il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICREC--KYDLP---PYAAN-----IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHT--GGGCT---TTHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHH--HHHHH---hhHHH-----HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 88854 577888999999999532 11110 11112 3445556666533 45566777788888763 2 2
Q ss_pred hhHHHHHhcCChHHHHHHHhccCCC-CcHHHH---HHHHHHHHHhh---CC--C------------------chHHHHHh
Q 010019 345 EICKSVAENGGIDALLRCIDDSGLQ-GNKTVA---RICCSLLSKLA---GS--D------------------SNKSAIIE 397 (520)
Q Consensus 345 e~~~~i~~~Ggv~~Ll~lL~~~~~~-~~~~v~---~~al~aL~~La---~~--~------------------~~k~~Iv~ 397 (520)
+......+ ..+++++..+...... .+.+.. ...+.+|+.++ +. + .....+ .
T Consensus 604 ~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 681 (963)
T 2x19_B 604 EEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-L 681 (963)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-H
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-H
Confidence 33333332 2334444444321100 122222 24444444443 21 1 001112 2
Q ss_pred cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 398 NGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 398 ~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
...++.+..++..+..++.+.+.+|.++..++
T Consensus 682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 24567778888877788999999999999875
No 98
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.59 E-value=3.2 Score=40.81 Aligned_cols=155 Identities=9% Similarity=0.091 Sum_probs=96.7
Q ss_pred HHHhccChhhHHHHHhcCChHHHHH-HHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc--CC
Q 010019 337 LKAVAVNDEICKSVAENGGIDALLR-CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SD 413 (520)
Q Consensus 337 L~~La~~~e~~~~i~~~Ggv~~Ll~-lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~--~~ 413 (520)
|+-++.++.....+.+.+.-..++. ++....+...+..+--+++++.|+-.++..+..+... .+.+++.+... +.
T Consensus 126 lRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~~il~~~~~~~~~~ 203 (304)
T 3ebb_A 126 LRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RESLMSHAIELKSGS 203 (304)
T ss_dssp HHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HHHHHHHHHGGGSSC
T ss_pred HHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HHHHHHHHHHHhcCC
Confidence 3333344444444443333344443 3332111223456788999999999998888887752 35555555432 35
Q ss_pred CHHHHHHHHHHHHHHhcC-----CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCH
Q 010019 414 DASVLQEVMSIITVLSLR-----SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGV 488 (520)
Q Consensus 414 ~~~v~~~a~~aL~nLa~~-----~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~ 488 (520)
+..++-.+...+.|++.. +.+.... ....+..++. ...+.+...-+..||.+|+...++..+.....|+
T Consensus 204 nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~-~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~ 277 (304)
T 3ebb_A 204 NKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILE-VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGV 277 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHT-TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred ChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHh-ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCH
Confidence 788999999999999863 1111111 2334444454 3467888889999999998877776666667799
Q ss_pred HHHHHHHHHhC
Q 010019 489 EKLIRQAKENH 499 (520)
Q Consensus 489 ~~lL~~~~~~h 499 (520)
...+..+....
T Consensus 278 ~~~v~~~~~~~ 288 (304)
T 3ebb_A 278 DSQIKKYSSVS 288 (304)
T ss_dssp HHHGGGGGGCC
T ss_pred HHHHHHHHhCC
Confidence 98887777553
No 99
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=90.85 E-value=5.6 Score=37.92 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCCh---HHHHHHHHHHHHHhcC-ChhhHHHHHhcCCHHHH
Q 010019 191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP---EILNSGFAVVAASATG-NEVVKESYMELKIDELI 266 (520)
Q Consensus 191 ~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~---~v~~~a~~~L~~~~~~-~e~nr~~i~~~g~i~~L 266 (520)
...++||.-+-.++...+.|..|++++.+-.|-.+|+..+... -+.-.++.+++.+... +.+.-..+.+.+++|..
T Consensus 71 nRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred hHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 4468888888777766677899999988888888887655443 3555677888887643 33334455688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh
Q 010019 267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI 346 (520)
Q Consensus 267 v~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~ 346 (520)
++.|..+++-...-|.-.+..+..+|..-.-+.+..+.--.+ ...+..++.-|...+.+.+++.....--.|+.++..
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av--~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHV--AMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 999999875333335555555555443211111111211111 124555555555555667888999988899988877
Q ss_pred HHHHH
Q 010019 347 CKSVA 351 (520)
Q Consensus 347 ~~~i~ 351 (520)
+..+.
T Consensus 229 r~aL~ 233 (268)
T 2fv2_A 229 REALR 233 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 100
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.65 E-value=26 Score=39.48 Aligned_cols=316 Identities=10% Similarity=0.043 Sum_probs=152.9
Q ss_pred CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHh--cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010019 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN 250 (520)
Q Consensus 173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~ 250 (520)
..++.|+..|.. +.++..|..++..++.+. +..+.. ...++.+..++.+..-+.+.+...+.+++.++...
T Consensus 529 ~vl~~l~~~l~~-----~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 529 SVLPLVLHALGN-----PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp TTHHHHHHHTTC-----GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC-----chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 455666665532 345555566666655332 122221 12233445555543335677777788888876433
Q ss_pred h-hhHHHHHhcCCHHHHHHHHhc----C-ChHHHH-------HHHHHHHHhcCCCCcchh----------hhhhchHHHH
Q 010019 251 E-VVKESYMELKIDELILEILSR----Q-RNDSIQ-------SLYDAIRVLLTPDDDQVV----------ASQVYGYARR 307 (520)
Q Consensus 251 e-~nr~~i~~~g~i~~Lv~lL~~----~-~~~~~~-------~a~~aL~~Ls~~dd~~v~----------~~~a~~~a~~ 307 (520)
+ +.+..+.+ ..+++++..+.. . +.+... ..+.+++.+.......+. +...+. ...
T Consensus 602 ~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 679 (963)
T 2x19_B 602 QVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNP-VVV 679 (963)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCH-HHH
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCc-hHH
Confidence 2 33443332 355666655542 2 222222 122333444321110000 000000 111
Q ss_pred HHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhc-cCCCCcHHHHHHHHHHHH
Q 010019 308 FAKIGIARALVHSLHAGL-SSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSLLS 383 (520)
Q Consensus 308 i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~-~~~~~~~~v~~~al~aL~ 383 (520)
+. ...++.+..++.... +..+.+.+|.++..++. .++.. .-++.++..+-. +...+.+. .+.++.
T Consensus 680 ~~-~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~------~~l~~~~~~l~~~~~~~~~~~----~l~l~~ 748 (963)
T 2x19_B 680 VL-QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA------PMVPQLCEMLGRMYSTIPQAS----ALDLTR 748 (963)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG------GGHHHHHHHHHHHHHHSCCHH----HHHHHH
T ss_pred HH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc------ccHHHHHHHHHHHHHcCCccH----HHHHHH
Confidence 22 235777777777654 56788889999988752 22211 113444433321 11001122 334444
Q ss_pred Hhh----CCCchHHHHHh--cCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC-----cHHHHHHH
Q 010019 384 KLA----GSDSNKSAIIE--NGGMDKLIVVSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAG-----SGDLAIQA 451 (520)
Q Consensus 384 ~La----~~~~~k~~Iv~--~g~l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G-----~i~~lv~~ 451 (520)
.+. ..+.....+.+ ...+..++.++... .+.|++++.....|..+....+... .... .++.++..
T Consensus 749 ~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~---~~~~~~~~~i~~~~~~~ 825 (963)
T 2x19_B 749 QLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF---LCERLDVKAVFQCAVLA 825 (963)
T ss_dssp HHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG---GCTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH---cCCcccHHHHHHHHHHH
Confidence 442 22222232322 12244555555532 3469999999999999886555432 1112 23445555
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhhC--hhhHHHHHhCCHHHHHHHHHH-----hCcchHHHHHHHHHHc
Q 010019 452 MLKFPNAQQLQRSSCFMIRNLVARN--PENRKLLLSNGVEKLIRQAKE-----NHEICKDAATDALRDL 513 (520)
Q Consensus 452 L~~~~~~~~vqk~A~~aL~nL~~~~--~e~~~~l~~~G~~~lL~~~~~-----~h~~~~~~a~aALr~L 513 (520)
++ + .+..+.+.++..+.++.... ++....++..-...++..++. .|+.+-+..+..|+.|
T Consensus 826 l~-~-~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l 892 (963)
T 2x19_B 826 LK-F-PEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFAL 892 (963)
T ss_dssp TT-C-SCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHH
T ss_pred cC-C-CCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHH
Confidence 64 4 57889999999999997643 244444555444444443321 2345555555555443
No 101
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.83 E-value=3.6 Score=38.63 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=90.8
Q ss_pred hhHHhcCCcHHHHHHHhcCC---------CChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCChHHHHH
Q 010019 211 ETFRTGGGPKLLVNILIDGN---------EDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS 280 (520)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~---------~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~~~~~~~ 280 (520)
..| ..+|+..|+++|.... .+.+.+..++++|..++. +......++.. +++..|...|.+....+...
T Consensus 38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 344 4678888888875421 135677788899988764 45566666654 57888888777655577777
Q ss_pred HHHHHHHhcCCCC--c-chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHH-hccChh-------hHHH
Q 010019 281 LYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA-VAVNDE-------ICKS 349 (520)
Q Consensus 281 a~~aL~~Ls~~dd--~-~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~-La~~~e-------~~~~ 349 (520)
+...|..+|...+ . ....-.+.++.+...+..-..++++.|+...+.+.+.. |..|-| +....+ .+..
T Consensus 116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~-~m~lIN~li~~~~dl~~R~~lR~e 194 (233)
T 2f31_A 116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVG-CLQLINALITPAEELDFRVHIRSE 194 (233)
T ss_dssp HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHH
Confidence 8888888887654 2 22112233333333344567888888875444444444 444444 333222 2334
Q ss_pred HHhcCChHHHHHHHhcc
Q 010019 350 VAENGGIDALLRCIDDS 366 (520)
Q Consensus 350 i~~~Ggv~~Ll~lL~~~ 366 (520)
+... |+..+++-|+..
T Consensus 195 f~~~-Gl~~il~~l~~~ 210 (233)
T 2f31_A 195 LMRL-GLHQVLQELREI 210 (233)
T ss_dssp HHHT-THHHHHHHHHHC
T ss_pred HHHC-ChHHHHHHHhcc
Confidence 4444 466666777653
No 102
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=89.22 E-value=34 Score=38.73 Aligned_cols=184 Identities=9% Similarity=0.043 Sum_probs=100.5
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC----cchhhhh--hchHH
Q 010019 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD----DQVVASQ--VYGYA 305 (520)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd----~~v~~~~--a~~~a 305 (520)
.+-+...++|+++..+..- .++.+ ..+++.++..|...+..++..||++|.+++...+ ....|.. -..|.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~--~~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL--TKAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS--CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred CceehHHHHHHHHHHHhhC--CHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 7889999999999987542 22222 2356777877775544677889999999987432 0011100 01122
Q ss_pred HHHHHcCCHHHHHHHHhcCC-Ch---hHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccC-CCCcHHHHHHH
Q 010019 306 RRFAKIGIARALVHSLHAGL-SS---PSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSG-LQGNKTVARIC 378 (520)
Q Consensus 306 ~~i~~~g~l~~Lv~lL~~~~-~~---~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~-~~~~~~v~~~a 378 (520)
. ..++.|+.++.... .+ .....+..+|..++. .++... ... ..++.|+..+.... +..++.+...+
T Consensus 547 ~-----~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~ 619 (960)
T 1wa5_C 547 E-----ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIMAKNPSNPRFTHYT 619 (960)
T ss_dssp H-----HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred H-----HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 1 24566777777641 00 012344555555441 122221 111 12345555554421 22345677778
Q ss_pred HHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 379 CSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 379 l~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
+.+|+.++.. ++....+. ...+|.+...|..+ .....+.+...+..+.
T Consensus 620 ~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~--~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 620 FESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSED--IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTT--CTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhh--hHhhHHHHHHHHHHHH
Confidence 8888888743 33333333 34678888888743 3345566666655543
No 103
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=88.90 E-value=12 Score=36.48 Aligned_cols=137 Identities=10% Similarity=0.059 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh----cCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHH
Q 010019 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS----RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARR 307 (520)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~ 307 (520)
.+..+..+++++.|+.. ++..|+.+... ...+++.+. +.+..++..++.++.|++.---....+ + .
T Consensus 161 ~p~n~ml~lR~l~NlF~-~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~----~---~ 230 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFV-GQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI----E---G 230 (304)
T ss_dssp CHHHHHHHHHHHHHGGG-SHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH----H---H
T ss_pred ChHHHHHHHHHHHHccC-CchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc----h---H
Confidence 45667889999999864 67788877753 234444443 223366666777888887521000000 0 0
Q ss_pred HHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 010019 308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (520)
Q Consensus 308 i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~ 383 (520)
....+..+..+++...|.+.+--++.||++|...+.....+.+.=++...+.-+.+.+.. +. +..|+..|-
T Consensus 231 --~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~--~k-v~~~~~~~~ 301 (304)
T 3ebb_A 231 --KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEP--AK-VSECCRFIL 301 (304)
T ss_dssp --HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSS--HH-HHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCc--hh-HHHHHHHHH
Confidence 011355566666665678888889999999985555555555554555544444443222 23 455555554
No 104
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.58 E-value=6.3 Score=39.95 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=94.7
Q ss_pred hhHHhcCCcHHHHHHHhcC---------CCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCChHHHHH
Q 010019 211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS 280 (520)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~~~~~~~ 280 (520)
..|. .+|+..|+++|.+- ..+.+.+..++++|..++ .+......++.. .++..|...|.+....+...
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 4554 67888888888531 224577888889998875 455566667755 57888888887766677777
Q ss_pred HHHHHHHhcCCCC--c-chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hh------hHHHH
Q 010019 281 LYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DE------ICKSV 350 (520)
Q Consensus 281 a~~aL~~Ls~~dd--~-~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e------~~~~i 350 (520)
+...|..+|...+ + ....-.+.++.+...+..-..++++.|+...+.+.+..+...+-.+... ++ .+..+
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 261 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 261 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8999999887664 1 2222223444444445567889999988654455544444333333322 22 23344
Q ss_pred HhcCChHHHHHHHhcc
Q 010019 351 AENGGIDALLRCIDDS 366 (520)
Q Consensus 351 ~~~Ggv~~Ll~lL~~~ 366 (520)
...| +..++.-|+..
T Consensus 262 ~~~G-l~~il~~lr~~ 276 (383)
T 3eg5_B 262 MRLG-LHQVLQELREI 276 (383)
T ss_dssp HHTT-HHHHHHHHTTS
T ss_pred HHCC-hHHHHHHHhcC
Confidence 4555 55566667753
No 105
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.80 E-value=4.3 Score=46.76 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHhccC--hhhHHHHHhcCChHHHHHHHhccCCC-CcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHH
Q 010019 327 SPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQ-GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK 403 (520)
Q Consensus 327 ~~~~~~a~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~lL~~~~~~-~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~ 403 (520)
=...+.++++++.++.. ++.-..++ ...++.|+.++...... ....+...+|++|+..+..-...... +++
T Consensus 467 W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-----L~~ 540 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-----LRT 540 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-----HHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-----HHH
Confidence 35678899999999843 22122222 13467788887642111 11234447789998877432111122 444
Q ss_pred HHHHHhc--cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh------cCcHHHHHHHHHh--CCCCHHHHHHHHHHHHHHh
Q 010019 404 LIVVSAR--FSDDASVLQEVMSIITVLSLRSPENAARAME------AGSGDLAIQAMLK--FPNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 404 Lv~lL~~--~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~------~G~i~~lv~~L~~--~~~~~~vqk~A~~aL~nL~ 473 (520)
++..|-. +.+++.|++.||++|.+||. +.+..+.. ...++.+++.+.. ..-+..-...+.-+|..++
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4443322 14568999999999999996 33334432 1134444433322 1234455566777888887
Q ss_pred hhC--hhhHHHHHh
Q 010019 474 ARN--PENRKLLLS 485 (520)
Q Consensus 474 ~~~--~e~~~~l~~ 485 (520)
... .+.+..+++
T Consensus 618 ~~~~~~~~~~~~l~ 631 (1023)
T 4hat_C 618 SEERSVAERNRLLS 631 (1023)
T ss_dssp TTCCSHHHHHHHHH
T ss_pred HhCCCHhhHHHHHH
Confidence 543 333444443
No 106
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=86.60 E-value=24 Score=40.32 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=117.9
Q ss_pred HHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhc--C----ChHHHHHHHHHHHHhcC
Q 010019 220 KLLVNILIDG---NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR--Q----RNDSIQSLYDAIRVLLT 290 (520)
Q Consensus 220 ~~Lv~lL~~~---~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~--~----~~~~~~~a~~aL~~Ls~ 290 (520)
+.++.++++. ...+.++..++++++..+..-.. ....+++++..+-+ + +..++..||.++.++|.
T Consensus 493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 3444444421 34688999999999886643221 12457777777765 2 22677789999999986
Q ss_pred CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhc----C--C--Chh----------------HHHHHHHHHHHhc----c
Q 010019 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHA----G--L--SSP----------------SLISASIALKAVA----V 342 (520)
Q Consensus 291 ~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~----~--~--~~~----------------~~~~a~~aL~~La----~ 342 (520)
.-.... .+.++.++..++. . + +.+ -+-...-+++.|. .
T Consensus 567 ~~~~~L--------------~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~ 632 (980)
T 3ibv_A 567 SIKKQV--------------VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL 632 (980)
T ss_dssp HTTTTC--------------SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC
T ss_pred HhhHHh--------------hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC
Confidence 433211 1234444444432 1 0 000 1222333333333 2
Q ss_pred ChhhHHHHHhcCChHHHHHHHhccC----CC-CcHHHHHHHHHHHHHhh-CCCc--h----HHHHHhcCCHHHHHHHHhc
Q 010019 343 NDEICKSVAENGGIDALLRCIDDSG----LQ-GNKTVARICCSLLSKLA-GSDS--N----KSAIIENGGMDKLIVVSAR 410 (520)
Q Consensus 343 ~~e~~~~i~~~Ggv~~Ll~lL~~~~----~~-~~~~v~~~al~aL~~La-~~~~--~----k~~Iv~~g~l~~Lv~lL~~ 410 (520)
..+.+....+ ..+++++.-+.... .. .+..-....+.+|+.++ +-++ + ...+.. ...+.+..+|..
T Consensus 633 ~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~-~~~~~il~~l~~ 710 (980)
T 3ibv_A 633 TPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFN-KASDEIFLILDR 710 (980)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHH-HHHHHHHHHHHh
Confidence 3444444433 23455554443221 11 11113346677788887 3221 1 122222 467888888998
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019 411 FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (520)
Q Consensus 411 ~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~ 474 (520)
+..+..|++.++.++..+..--... + ...++.+++.|-.+....+ .....|.+..++.
T Consensus 711 ~~~~~~irea~~~~~~r~i~~lg~~---~--~p~lp~~i~~ll~~~~~~e-~~~fL~l~~qli~ 768 (980)
T 3ibv_A 711 MGFNEDIRGAVRFTSGRIINVVGPD---M--LPKVPQLISILLNSIDMNE-LVDVLSFISQLIH 768 (980)
T ss_dssp SCCSHHHHHHHHHHHHHHTTTTHHH---H--TTTHHHHHHHHHHHCCTTT-HHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHccHh---H--HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHH
Confidence 8889999999999999886421111 1 2345555555543212111 2344555555554
No 107
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=83.87 E-value=17 Score=36.72 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=89.5
Q ss_pred cCCcHHHHHHHhcC---------CCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCChHHHHHHHHHH
Q 010019 216 GGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQSLYDAI 285 (520)
Q Consensus 216 ~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL 285 (520)
.+|+..|+.+|.+- ..+.+.+..++++|..++. +......++.. +++..|...|.+....+...+...|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 57888888887542 1135677888899988764 45566666655 5788888887765556666788888
Q ss_pred HHhcCCCCc---chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh-------hHHHHHhcCC
Q 010019 286 RVLLTPDDD---QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE-------ICKSVAENGG 355 (520)
Q Consensus 286 ~~Ls~~dd~---~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e-------~~~~i~~~Gg 355 (520)
..+|...++ ....-.+.++.+...+..-..+|++.++.+.+.+.+..+...+-.|....+ .+..+...|
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G- 203 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG- 203 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-
Confidence 888876541 111112333333344445678899988765445554444333333433222 234455554
Q ss_pred hHHHHHHHhcc
Q 010019 356 IDALLRCIDDS 366 (520)
Q Consensus 356 v~~Ll~lL~~~ 366 (520)
+..++.-|+..
T Consensus 204 L~~il~~Lr~~ 214 (386)
T 2bnx_A 204 LHQVLQELREI 214 (386)
T ss_dssp HHHHHHHHTTC
T ss_pred hHHHHHHHhcc
Confidence 66667777753
No 108
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.51 E-value=9.7 Score=43.98 Aligned_cols=135 Identities=12% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHHHHHHHhcC---CChhHHHHHHHHHHHhc----cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019 314 ARALVHSLHAG---LSSPSLISASIALKAVA----VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (520)
Q Consensus 314 l~~Lv~lL~~~---~~~~~~~~a~~aL~~La----~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La 386 (520)
+..+..+++.. .++.+...+..+++.|. .+...|. ...++.+.+.+....+..+.+-...++.+|+|+.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 44455555432 12444455666666664 2322221 1224555555433222223456678888998876
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHH
Q 010019 387 GSDSNKSAIIENGGMDKLIVVSARF-----SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL 461 (520)
Q Consensus 387 ~~~~~k~~Iv~~g~l~~Lv~lL~~~-----~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~v 461 (520)
.. ..++.|...+... +....++..|+++|..++...|+..+.+ ++.+..+...++++
T Consensus 469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~i--------l~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI--------VLPIFLNVAIKSEL 530 (1056)
T ss_dssp CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH--------HHHHHHCTTSCHHH
T ss_pred Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHH--------HHHHhcCCCCChHH
Confidence 42 2456666665421 2246788999999999998777655443 55566555667777
Q ss_pred HHHHHHHHH
Q 010019 462 QRSSCFMIR 470 (520)
Q Consensus 462 qk~A~~aL~ 470 (520)
...|+..|-
T Consensus 531 RiaA~~~Lm 539 (1056)
T 1lsh_A 531 RIRSCIVFF 539 (1056)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 109
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=74.72 E-value=69 Score=36.51 Aligned_cols=252 Identities=9% Similarity=0.018 Sum_probs=123.9
Q ss_pred cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCC-ChHHHHHHHHHHHHHhc-CChh----hHHHHHhcCC
Q 010019 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE-DPEILNSGFAVVAASAT-GNEV----VKESYMELKI 262 (520)
Q Consensus 189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~-~~~v~~~a~~~L~~~~~-~~e~----nr~~i~~~g~ 262 (520)
++..+..|...|..+-.. .++......+|.+... +..++..|+..|.+... -.++ .+..+.
T Consensus 21 d~~~r~~A~~~L~~~q~s---------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr---- 87 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS---------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR---- 87 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS---------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHcC---------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH----
Confidence 445555555555544221 1234455556654332 67777777777766443 2233 343333
Q ss_pred HHHHHHHHhcC----Ch-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHH
Q 010019 263 DELILEILSRQ----RN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIAL 337 (520)
Q Consensus 263 i~~Lv~lL~~~----~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL 337 (520)
..|+.++... .+ -++...|.+|..+...+=+. . + .+.++.|+.++..+.........+..|
T Consensus 88 -~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~---W-----p~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 88 -DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----N---W-----NDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp -HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----T---C-----TTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----c---C-----chHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 2344444432 22 33344666666655321000 0 0 135677777776532112233334444
Q ss_pred HHhcc---------Chh-------hHHHHHhcC---ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhc
Q 010019 338 KAVAV---------NDE-------ICKSVAENG---GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN 398 (520)
Q Consensus 338 ~~La~---------~~e-------~~~~i~~~G---gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~ 398 (520)
..|.. ..+ .+..+.+.. +++..+.+|..+....++.++..++.+|......-+ -..|++.
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~ 232 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNE 232 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcc
Confidence 42220 000 122222210 134455556543211245788899999988876533 2456665
Q ss_pred CCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019 399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS--PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (520)
Q Consensus 399 g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~--~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL 472 (520)
+.++.+.++|. ++.+++.||.+|..+..+. ++....++..=.+..++..+....+|.++.+.-|..+..+
T Consensus 233 ~ll~~l~~~L~----~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ 304 (980)
T 3ibv_A 233 PCMNLLYSFLQ----IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQ 304 (980)
T ss_dssp HHHHHHHHHTT----SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC----ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 56666666665 5899999999999998653 4444444332111222222221135666665555555443
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=70.69 E-value=70 Score=29.95 Aligned_cols=141 Identities=12% Similarity=0.092 Sum_probs=85.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhc-cCCCCcHHHHHHHHHHHHHhhC--CCchH
Q 010019 316 ALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSLLSKLAG--SDSNK 392 (520)
Q Consensus 316 ~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~-~~~~~~~~v~~~al~aL~~La~--~~~~k 392 (520)
.+...|-.+...++..-|+.+|..+ . -.+.++.++.. .....+-.|++.++.+++.++. .++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~------------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S------------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T------------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c------------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence 4444455444345666677777766 2 11233444443 2233457899999999988863 3331
Q ss_pred HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 010019 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF--PNAQQLQRSSCFMIR 470 (520)
Q Consensus 393 ~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~--~~~~~vqk~A~~aL~ 470 (520)
.++.+...++ .+++.|++.|...+.--+.+ +.- ..-.+.++.++... ..+.-||+..+|+|+
T Consensus 140 -------~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~-~~~------k~dp~~ll~iL~~L~~D~s~yVrKSVan~Lr 203 (240)
T 3l9t_A 140 -------ALPIIDEWLK--SSNLHTRRAATEGLRIWTNR-PYF------KENPNEAIRRIADLKEDVSEYVRKSVGNALR 203 (240)
T ss_dssp -------THHHHHHHHH--CSSHHHHHHHHHHTCSGGGS-TTT------TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhc--CCCHHHHHHHHHhhHHHhcc-chh------hcCHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5667777777 78999999888776542321 100 11122233333222 246779999999999
Q ss_pred HHhhhChhhHHHHHhC
Q 010019 471 NLVARNPENRKLLLSN 486 (520)
Q Consensus 471 nL~~~~~e~~~~l~~~ 486 (520)
.++-.+|+-...+++.
T Consensus 204 D~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 204 DISKKFPDLVKIELKN 219 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHhhhCHHHHHHHHHH
Confidence 9988899987777764
No 111
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=68.42 E-value=1.8e+02 Score=33.80 Aligned_cols=229 Identities=11% Similarity=0.057 Sum_probs=116.7
Q ss_pred CcHHHHHHHhcCCCChHHHHHHHHHHHHHhc-----CChhhHHHHHhcCCHHHHHHHHhcC------ChHHHHH-HHHHH
Q 010019 218 GPKLLVNILIDGNEDPEILNSGFAVVAASAT-----GNEVVKESYMELKIDELILEILSRQ------RNDSIQS-LYDAI 285 (520)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~-----~~e~nr~~i~~~g~i~~Lv~lL~~~------~~~~~~~-a~~aL 285 (520)
+...+...|...+.+..+...|+..|.+... -+++.|..|.+ .|+..+.+. .+..+++ .+.++
T Consensus 46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-----~ll~~l~~~~~~~~~~~~~vr~kla~~l 120 (1204)
T 3a6p_A 46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-----SVMELIANGTLNILEEENHIKDALSRIV 120 (1204)
T ss_dssp THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-----HHHHHHHHSSCCTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-----HHHHHHHhhccccccccHHHHHHHHHHH
Confidence 3344444444334567777788777776542 24555555543 344554432 2244444 66667
Q ss_pred HHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-------hhh-----HHHHHhc
Q 010019 286 RVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-------DEI-----CKSVAEN 353 (520)
Q Consensus 286 ~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-------~e~-----~~~i~~~ 353 (520)
..++..+-+ +.+ .+.++.|+++++. +......++.+|..|+.. ... +..+.+.
T Consensus 121 a~Ia~~d~p--------~~W-----p~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~ 185 (1204)
T 3a6p_A 121 VEMIKREWP--------QHW-----PDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN 185 (1204)
T ss_dssp HHHHHHHST--------TTC-----TTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCc--------ccc-----hHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence 666543211 000 1457888888865 233455566666666421 011 1112211
Q ss_pred CChHHH----HHHHhccCC---------------CCcHHHHHHHHHHHHHhhCCCchHHHHHhcC--CHHHHHHHHhccC
Q 010019 354 GGIDAL----LRCIDDSGL---------------QGNKTVARICCSLLSKLAGSDSNKSAIIENG--GMDKLIVVSARFS 412 (520)
Q Consensus 354 Ggv~~L----l~lL~~~~~---------------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g--~l~~Lv~lL~~~~ 412 (520)
++.+ ..+|..+.. .++..++..++.++.+....-.. ..+++.. .++.+..++
T Consensus 186 --~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l---- 258 (1204)
T 3a6p_A 186 --MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLL---- 258 (1204)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGG----
T ss_pred --HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHc----
Confidence 3333 333432100 01235777778887766544322 2333432 344444433
Q ss_pred CCHHHHHHHHHHHHHHhcCC--HHHHHHHHhc---CcHHHHHHHHHhC------CCCHHHHHHHHHHHHHHh
Q 010019 413 DDASVLQEVMSIITVLSLRS--PENAARAMEA---GSGDLAIQAMLKF------PNAQQLQRSSCFMIRNLV 473 (520)
Q Consensus 413 ~~~~v~~~a~~aL~nLa~~~--~~~~~~i~~~---G~i~~lv~~L~~~------~~~~~vqk~A~~aL~nL~ 473 (520)
.++.++..|+.+|..++.+. ++....++.. .++..++..+... ..+..+.+.-|.++..+.
T Consensus 259 ~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 259 NEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 36789999999999999754 4443333321 1233445444311 123567778888888775
No 112
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=67.54 E-value=82 Score=29.50 Aligned_cols=150 Identities=9% Similarity=0.037 Sum_probs=77.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHH-HhcCCChhHHHHHHHHHHHhcc
Q 010019 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS-LHAGLSSPSLISASIALKAVAV 342 (520)
Q Consensus 264 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~l-L~~~~~~~~~~~a~~aL~~La~ 342 (520)
+.+-..+...+-.++..++.+|..++..-.... +. ......++ ...+|.|++- |.+ +...+...+..+|..++.
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~--~~-~~~~~~~~-~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSS--LK-NAHNITLI-STWTPLLVEKGLTS-SRATTKTQSMSCILSLCG 132 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-----CC-HHHHHHHH-HHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh--cc-cchhHHHH-HHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHH
Confidence 344445543333777778888877764321100 00 00001111 2346666653 332 234455566665555431
Q ss_pred ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC---CC-chHHHHHhcCCHHHHHHHHhccCCCHHHH
Q 010019 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG---SD-SNKSAIIENGGMDKLIVVSARFSDDASVL 418 (520)
Q Consensus 343 ~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~---~~-~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~ 418 (520)
. .+....+++.+.....+.++.++..++..|..+.. .. -+-...+. ..++.+..+|. ..++.|+
T Consensus 133 ~---------~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~--d~~~~VR 200 (278)
T 4ffb_C 133 L---------DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG--HGDRNVR 200 (278)
T ss_dssp T---------SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT--CSSHHHH
T ss_pred h---------cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh--CCcHHHH
Confidence 1 11223334444333334567899999999888752 11 11111111 23456667776 6789999
Q ss_pred HHHHHHHHHHhc
Q 010019 419 QEVMSIITVLSL 430 (520)
Q Consensus 419 ~~a~~aL~nLa~ 430 (520)
+.|..++..|..
T Consensus 201 ~aA~~l~~~ly~ 212 (278)
T 4ffb_C 201 SQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 113
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=66.58 E-value=24 Score=40.35 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHHHHHHHhccCCC-----CcHHHHHHHHHHHHHhhCCCchHHHHHhcC
Q 010019 326 SSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQ-----GNKTVARICCSLLSKLAGSDSNKSAIIENG 399 (520)
Q Consensus 326 ~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~Ll~lL~~~~~~-----~~~~v~~~al~aL~~La~~~~~k~~Iv~~g 399 (520)
+-..+..++++++.++.. .+... ..-++.++..|-..++. +.+-+...+|++++..+..-........ .
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e----~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~ 540 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTE----KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-T 540 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHH----HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-H
T ss_pred CHHHHHHHHHHHHHHhcccCchhh----HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-H
Confidence 334577889999998742 11100 01122333333221111 1223344688999987732111112222 3
Q ss_pred CHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019 400 GMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (520)
Q Consensus 400 ~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~ 430 (520)
.++.+++.|. ..++.|+..||.+|.++|.
T Consensus 541 vl~~ll~~l~--~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 541 VILKLFEFMH--ETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHTT--SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 4566666665 5579999999999999996
No 114
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=65.87 E-value=1.1e+02 Score=30.26 Aligned_cols=223 Identities=11% Similarity=0.102 Sum_probs=135.7
Q ss_pred HHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc----chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHH
Q 010019 169 ATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS----TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (520)
Q Consensus 169 i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~----~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (520)
+.+.+.+..|+..|..- +-+....+....+++...+.+ .-+.+.. -|.++..|-.+.+++++...+-..|+
T Consensus 74 i~~~dll~~Li~~l~~L---~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLR 148 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLI---DFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHSHHHHHHHTGGGS---CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccC---CchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHH
Confidence 34557888888877764 444444455556666654321 1122222 35555555555567777666555555
Q ss_pred HHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc---CCHHHHHHHH
Q 010019 245 ASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI---GIARALVHSL 321 (520)
Q Consensus 245 ~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~---g~l~~Lv~lL 321 (520)
.+ .+++.....+...+.+..+.+.+...+=++...|..++.-|.+....-+ + .+... ........||
T Consensus 149 ec-ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lv--------a-efL~~nyd~Ff~~y~~Ll 218 (341)
T 1upk_A 149 EC-IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLS--------A-EFLEQHYDRFFSEYEKLL 218 (341)
T ss_dssp HH-HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHH--------H-HHHHHTHHHHHHHHHHHT
T ss_pred HH-HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHH--------H-HHHHHhHHHHHHHHHHHh
Confidence 54 6788888888888888888888876544887888888887765321111 1 12211 1345566677
Q ss_pred hcCCChhHHHHHHHHHHHhccChhhHHHHH----hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHh
Q 010019 322 HAGLSSPSLISASIALKAVAVNDEICKSVA----ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIE 397 (520)
Q Consensus 322 ~~~~~~~~~~~a~~aL~~La~~~e~~~~i~----~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~ 397 (520)
.+. +=-+++.+...|+.|..+..|...+. +..-+..++.+|++. ++.++-+|.-++.-...+|..-..|.+
T Consensus 219 ~S~-NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~----sk~Iq~EAFhVFKvFVANP~K~~~I~~ 293 (341)
T 1upk_A 219 HSE-NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK----SRNIQFEAFHVFKVFVANPNKTQPILD 293 (341)
T ss_dssp TCS-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred cCC-cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc----hhchhhhhhhheeeeeeCCCCChHHHH
Confidence 654 33467889999999987766655443 334567788888763 358999999999887766644333322
Q ss_pred c--CCHHHHHHHHhcc
Q 010019 398 N--GGMDKLIVVSARF 411 (520)
Q Consensus 398 ~--g~l~~Lv~lL~~~ 411 (520)
- .-=+.|++.|..+
T Consensus 294 IL~~Nr~kLl~fl~~f 309 (341)
T 1upk_A 294 ILLKNQAKLIEFLSKF 309 (341)
T ss_dssp HHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 1 1124555555544
No 115
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=58.41 E-value=59 Score=37.50 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=61.7
Q ss_pred CcHHHHHHHHHHHHHhhCCCc---hHHHHHhcCCHHHHHHHHhccCC---CHHHHHHHHHHHHHHhc---CCHHHHHHHH
Q 010019 370 GNKTVARICCSLLSKLAGSDS---NKSAIIENGGMDKLIVVSARFSD---DASVLQEVMSIITVLSL---RSPENAARAM 440 (520)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~---~k~~Iv~~g~l~~Lv~lL~~~~~---~~~v~~~a~~aL~nLa~---~~~~~~~~i~ 440 (520)
.+....+.+|++++.+|+.-. .+..+. ..++.|+.+...-.+ .+.+....|+++...+. .+++.-..
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-- 566 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-- 566 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH--
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH--
Confidence 357889999999999997532 333444 357777777652111 23455556677765542 23332222
Q ss_pred hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh
Q 010019 441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477 (520)
Q Consensus 441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~ 477 (520)
.+..+++.| +.++++||..||.++..++...+
T Consensus 567 ---vl~~L~~~m--~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 567 ---VVNKLFEFM--HETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp ---HHHHHHHHT--TCCSTTHHHHHHHHHHHHHHHTG
T ss_pred ---HHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHH
Confidence 234555555 45678999999999999975433
No 116
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=57.77 E-value=95 Score=29.02 Aligned_cols=138 Identities=7% Similarity=0.046 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHhcCC-CC--hhhHHHHHhcCcHHHHHHH-HhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc
Q 010019 141 EDLNEMMGLFDKLIELCGGN-EG--SVNAAVATKNGGVELVCSI-CYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216 (520)
Q Consensus 141 ~d~~~~~~al~~L~~l~~~~-~~--~~~r~~i~~~Gaip~Lv~l-L~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ 216 (520)
.+...+..++..|..++... .. ........-...+|.|+.= |.+ ....+...++.++..+.........+
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~---~k~~~~~~a~~~l~~~~~~~~~~~~~--- 140 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTS---SRATTKTQSMSCILSLCGLDTSITQS--- 140 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHTSSSSHHH---
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhcCcHHHH---
Confidence 66777778888888777531 01 1111122223456666653 433 24556666666665554221111111
Q ss_pred CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC---ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 010019 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATG---NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (520)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~---~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 289 (520)
++.++..+. ..++.+...++.+|..+... ...+...++. .+++.+..+|...+.+++..|..++..|-
T Consensus 141 --~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 141 --VELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp --HHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 233333343 45788888888888776421 0011111111 23445566666655577777777766554
No 117
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=53.16 E-value=1.8e+02 Score=28.70 Aligned_cols=170 Identities=11% Similarity=0.075 Sum_probs=120.3
Q ss_pred HHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccCh-h----hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHH
Q 010019 305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-E----ICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379 (520)
Q Consensus 305 a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~-e----~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al 379 (520)
++.+...+.+..|+..|..- +-+..++++....+|.... + ...-+.. --+.+..++. +.+.+ ++.-.|=
T Consensus 71 ~~ei~~~dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~-gYe~~--diAl~~G 144 (341)
T 1upk_A 71 AQELYNSGLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLK-GYESP--EIALNCG 144 (341)
T ss_dssp HHHHHHHSHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHH-GGGST--TTHHHHH
T ss_pred HHHHHHhCHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHH-hhccc--hhHhHHH
Confidence 45677778899998888764 4567888888888876432 1 1223333 2334444444 33433 5666666
Q ss_pred HHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCc---HHHHHHHHHhCC
Q 010019 380 SLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS---GDLAIQAMLKFP 456 (520)
Q Consensus 380 ~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~---i~~lv~~L~~~~ 456 (520)
..|+-...++.....|...+.+..+.+.++ .++-+|...|..++..|-.++.......+.... ....-.+| .+
T Consensus 145 ~mLRecir~e~la~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll--~S 220 (341)
T 1upk_A 145 IMLRECIRHEPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL--HS 220 (341)
T ss_dssp HHHHHHHTSHHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHhHHHHHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh--cC
Confidence 677777788888888888888888888887 678999999999999998888888888877664 34445555 45
Q ss_pred CCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019 457 NAQQLQRSSCFMIRNLVARNPENRKLLLS 485 (520)
Q Consensus 457 ~~~~vqk~A~~aL~nL~~~~~e~~~~l~~ 485 (520)
++..++|++.-+|..+-. ++.|...|..
T Consensus 221 ~NYVTkRQSlKLLgelLl-dr~N~~vM~~ 248 (341)
T 1upk_A 221 ENYVTKRQSLKLLGELLL-DRHNFTIMTK 248 (341)
T ss_dssp SSHHHHHHHHHHHHHHHH-SGGGHHHHHH
T ss_pred CcchhHHHHHHHHHHHHh-CchHHHHHHH
Confidence 789999999999999954 4555555543
No 118
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=43.07 E-value=28 Score=40.15 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHhccC--hh-hHHHHHhcCChHHHHHHHhccCCCCcH-HHHHHHHHHHHHhhCCCchHHHHHhcCCHH
Q 010019 327 SPSLISASIALKAVAVN--DE-ICKSVAENGGIDALLRCIDDSGLQGNK-TVARICCSLLSKLAGSDSNKSAIIENGGMD 402 (520)
Q Consensus 327 ~~~~~~a~~aL~~La~~--~e-~~~~i~~~Ggv~~Ll~lL~~~~~~~~~-~v~~~al~aL~~La~~~~~k~~Iv~~g~l~ 402 (520)
-.....+||+++.++.. ++ .+..+.+ .++.|+.+.....+..++ .+....|.+++..+..-.....+.+ -.+.
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~--vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~vl~ 569 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVT--VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-TVVN 569 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHH
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHH--HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-HHHH
Confidence 35678899999999842 21 2233332 356666666432111112 3444466788877633211222322 2344
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019 403 KLIVVSARFSDDASVLQEVMSIITVLSLRS 432 (520)
Q Consensus 403 ~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~ 432 (520)
.|++.|. ..++.|++.||.++..+|...
T Consensus 570 ~L~~~m~--~~~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 570 KLFEFMH--ETHDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp HHHHHTT--CCSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHHHHHH
Confidence 5555554 557899999999999998643
No 119
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=36.88 E-value=2.4e+02 Score=25.43 Aligned_cols=177 Identities=18% Similarity=0.266 Sum_probs=98.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC--CCCcH--HHHHHHHHHHHHhhCCCc
Q 010019 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG--LQGNK--TVARICCSLLSKLAGSDS 390 (520)
Q Consensus 315 ~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~--~~~~~--~v~~~al~aL~~La~~~~ 390 (520)
.-|.++|+...|.+++....-..+. ..-.+.+.++..||+.-|+.+-.... +..+. +--+.||.+|+..-...+
T Consensus 69 kyladllktrddmdllnemvvvfrs--ssvsfiktfvsvgglanlmaiykkkieaensntaideerkccevlryvfaeed 146 (353)
T 4dvg_B 69 KYLADLLKTRDDMDLLNEMVVVFRS--SSVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEED 146 (353)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHH--SCHHHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhccchHHHhhhheEEEec--cchhHHHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhccc
Confidence 3455677765555666555544443 23467788999999999888765422 22222 223579999998865555
Q ss_pred hHHHHHh-cCCHHHHHHHHhccCCCHHHHHHHHHHHH--HHhcCCHHH---------H-----HHHHhcCc----HHHHH
Q 010019 391 NKSAIIE-NGGMDKLIVVSARFSDDASVLQEVMSIIT--VLSLRSPEN---------A-----ARAMEAGS----GDLAI 449 (520)
Q Consensus 391 ~k~~Iv~-~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~--nLa~~~~~~---------~-----~~i~~~G~----i~~lv 449 (520)
...++++ .||++.|+.-|+...-.|.-+-..+.-+. .-...+|.+ + ..++..|. .-...
T Consensus 147 atvalieidggvelllkgmnskritpdnqldilleitltssmvehpsqeglylggdvcvmnafsnlvsegvdmkkflsff 226 (353)
T 4dvg_B 147 ATVALIEIDGGVELLLKGMNSKRITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLSFF 226 (353)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHCSBCTTSTTCBCCHHHHHHHHHHHHHHTTSCSSTTHHHH
T ss_pred ceEEEEEecccHHHHhcccccCcCCCccccceeeeEeehhhhhcCccccceeecCceeeehhhHHHHhccccHHHHHHHH
Confidence 5556555 47899999999844335655444332221 111122221 1 12333342 22233
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhhChh------hHHHHHhCCHHHHHHHH
Q 010019 450 QAMLKFPNAQQLQRSSCFMIRNLVARNPE------NRKLLLSNGVEKLIRQA 495 (520)
Q Consensus 450 ~~L~~~~~~~~vqk~A~~aL~nL~~~~~e------~~~~l~~~G~~~lL~~~ 495 (520)
.+..+ +...........+|.||. ..|+ .+..+++-|...-|...
T Consensus 227 slfsk-sksekfkhaslvlinnli-dqpelehrmdvrnsfieiglvnelenm 276 (353)
T 4dvg_B 227 SLFSK-SKSEKFKHASLVLINNLI-DQPELEHRMDVRNSFIEIGLVNELENM 276 (353)
T ss_dssp HHHHH-CCCHHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHhh-hhhhhcccceeehhhccc-cchhhHhhhhhhhhheeeehhhHhhhc
Confidence 33433 345555555556777774 3443 35667777887766443
No 120
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=35.35 E-value=57 Score=30.76 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHHHhhCCCc-hHHHHHhcCCHHHHHHHHhc-cC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019 371 NKTVARICCSLLSKLAGSDS-NKSAIIENGGMDKLIVVSAR-FS-----DDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~-~k~~Iv~~g~l~~Lv~lL~~-~~-----~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G 443 (520)
++..+--+++++.|+-.++. .+..+......+.+++.+.. +. .+..++-.+...+.|++......+. +..
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e 179 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLE 179 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTT
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHH
Confidence 35677889999999998888 67666543223444443321 11 2456777778888888862111000 122
Q ss_pred cHHHHHHHHHh----C---CCCHHHHHHHHHHHHHHhhhChhh
Q 010019 444 SGDLAIQAMLK----F---PNAQQLQRSSCFMIRNLVARNPEN 479 (520)
Q Consensus 444 ~i~~lv~~L~~----~---~~~~~vqk~A~~aL~nL~~~~~e~ 479 (520)
....+++++.. . ..+.+...-+..|+.+|+..+++.
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~ 222 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 222 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHH
Confidence 34455555543 1 136677788889999998765544
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=34.56 E-value=5.6e+02 Score=29.15 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=78.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC----C--ChhHHHHHHHHHHH
Q 010019 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG----L--SSPSLISASIALKA 339 (520)
Q Consensus 266 Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~----~--~~~~~~~a~~aL~~ 339 (520)
|.+.+.+.+.+....+..+|.|+-.. ..++.|..++... . ...+...|++||.+
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~g~p--------------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~ 504 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNAGQP--------------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRN 504 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCG--------------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTT
T ss_pred HHHHHhcCChHHHHHHHHHhhccCCh--------------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHH
Confidence 44444554445566678888887642 2366676666431 1 13567789999999
Q ss_pred hccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019 340 VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQ 419 (520)
Q Consensus 340 La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~ 419 (520)
++... ...++ +.++.+..+..+ +.++...|+.+| +-.+|+. .-+..+...|. +-.+..|..
T Consensus 505 ~~~~~---p~~v~----~il~~i~~n~~e--~~EvRiaA~~~L--m~t~P~~-------~~l~~ia~~l~-~E~~~QV~s 565 (1056)
T 1lsh_A 505 IAKRD---PRKVQ----EIVLPIFLNVAI--KSELRIRSCIVF--FESKPSV-------ALVSMVAVRLR-REPNLQVAS 565 (1056)
T ss_dssp GGGTC---HHHHH----HHHHHHHHCTTS--CHHHHHHHHHHH--HHTCCCH-------HHHHHHHHHHT-TCSCHHHHH
T ss_pred hhhhc---hHHHH----HHHHHHhcCCCC--ChHHHHHHHHHH--HHHCcCH-------HHHHHHHHHHh-hCchHHHHH
Confidence 98432 11122 467788765433 358888877666 3334432 12446666776 335788888
Q ss_pred HHHHHHHHHhcCC
Q 010019 420 EVMSIITVLSLRS 432 (520)
Q Consensus 420 ~a~~aL~nLa~~~ 432 (520)
.....|.+|+..+
T Consensus 566 fv~S~l~sla~s~ 578 (1056)
T 1lsh_A 566 FVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcC
Confidence 8999999988643
No 122
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=30.07 E-value=6.4e+02 Score=28.38 Aligned_cols=184 Identities=13% Similarity=0.061 Sum_probs=99.4
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhcc------ChhhHHHHHhcCChHHHHHHHhccCCCC-----cHHHHHHHHH
Q 010019 312 GIARALVHSLHAGLSSPSLISASIALKAVAV------NDEICKSVAENGGIDALLRCIDDSGLQG-----NKTVARICCS 380 (520)
Q Consensus 312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~------~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~-----~~~v~~~al~ 380 (520)
++...+..+|....+..++.-|+.+|.+... .++.+..|. ..|+.++......+ +..+....+.
T Consensus 48 ~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir-----~~ll~~l~~~~~~~~~~~~~~~i~~kl~~ 122 (1049)
T 3m1i_C 48 DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIR-----NFVVGMIISMCQDDEVFKTQKNLINKSDL 122 (1049)
T ss_dssp TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH-----HHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH-----HHHHHHHHhhCCccccchhhHHHHHHHHH
Confidence 4566667777665566777778888877642 344444443 24555554422100 1357777788
Q ss_pred HHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC----C-----HHHH----HHHHh--cC
Q 010019 381 LLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR----S-----PENA----ARAME--AG 443 (520)
Q Consensus 381 aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~----~-----~~~~----~~i~~--~G 443 (520)
++..++.. ++.= -+.++.|++.++ .++..++.++.+|..|+.. + ...+ ..+.+ ..
T Consensus 123 ~ia~Ia~~~~p~~W-----p~ll~~L~~~~~---~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~ 194 (1049)
T 3m1i_C 123 TLVQILKQEWPQNW-----PEFIPELIGSSS---SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQ 194 (1049)
T ss_dssp HHHHHHHHHTTTTC-----TTHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccc-----hHHHHHHHHHHc---cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 88888732 2110 134677777775 3566778888888887731 0 0111 11211 11
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHH
Q 010019 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALR 511 (520)
Q Consensus 444 ~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr 511 (520)
....+...|... .+..+...+..++.++..--+ ...+.+......+.......+.....|..+|.
T Consensus 195 i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~ 259 (1049)
T 3m1i_C 195 IFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMTSPDTRAITLKCLT 259 (1049)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhCCCHhHHHHHHHHHH
Confidence 244456666654 457788888888877654222 12244455555554333233444444444443
No 123
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=29.57 E-value=42 Score=25.66 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCChhHHH-HHHHHHHhhcCcc
Q 010019 71 EVVKENMEDLGMEPTEAL-QDAIQTLSLQGVD 101 (520)
Q Consensus 71 e~V~eni~~~~m~p~eal-~~aI~qf~~qgvd 101 (520)
+-.+++++.|+++|++++ ...++++...+++
T Consensus 6 e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~ 37 (78)
T 4e2i_2 6 QQLAEELQIFGLDCEEALIEKLVELCVQYGQN 37 (78)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCC
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC
Confidence 457899999999999877 6677777776654
No 124
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=27.37 E-value=46 Score=35.59 Aligned_cols=141 Identities=16% Similarity=0.090 Sum_probs=85.5
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (520)
Q Consensus 261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L 340 (520)
.++..|+..+....=++...+.-.|+.+ .|.-. .+ .+.++.++..|++. |.+++.-|+.+|..+
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~----------~L--d~Vv~aVL~GL~D~-DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVE----------DK--DGLCRKLVSLLSSP-DEDIKLLSAELLCHF 326 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCC----------CH--HHHHHHHHHHTTCS-SHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHH----------HH--HHHHHHHHhhcCCc-ccHHHHHHHHHhhhh
Confidence 3444555433332227777777788888 22111 11 24577777777764 678888899999988
Q ss_pred ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHH
Q 010019 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQE 420 (520)
Q Consensus 341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~ 420 (520)
+ .++....++ ..+.++|.+. ++-+ .-....+.+|+.|...+.+ +-....-+|.|.-.|+ +.-++|+..
T Consensus 327 A-~p~~l~~LL-----~iLWd~L~~L-DDLS-ASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLR--HtITSVR~A 394 (800)
T 3oc3_A 327 P-ITDSLDLVL-----EKCWKNIESE-ELIS-VSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFT--SPVPEVRTS 394 (800)
T ss_dssp C-CSSTHHHHH-----HHHHHHHHTC-CSCC-TTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGT--CSSHHHHHH
T ss_pred c-chhhHHHHH-----HHHHHHhhhh-cccc-hhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhc--CCcHHHHHH
Confidence 8 333333333 4677777754 2211 2334566777777654421 1111245777777886 568999999
Q ss_pred HHHHHHHHh
Q 010019 421 VMSIITVLS 429 (520)
Q Consensus 421 a~~aL~nLa 429 (520)
++.+|..+.
T Consensus 395 VL~TL~tfL 403 (800)
T 3oc3_A 395 ILNMVKNLS 403 (800)
T ss_dssp HHHHTTTCC
T ss_pred HHHHHHHHH
Confidence 999998776
No 125
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=26.91 E-value=56 Score=24.89 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=18.1
Q ss_pred HHHHHhhcCCChhHHHHHHHHHH
Q 010019 73 VKENMEDLGMEPTEALQDAIQTL 95 (520)
Q Consensus 73 V~eni~~~~m~p~eal~~aI~qf 95 (520)
+.+-.+..+.+..+.+++||.+|
T Consensus 24 Ld~la~~~g~srselireAi~~y 46 (80)
T 2k5j_A 24 LDDLEVQRNLPRADLLREAVDQY 46 (80)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 33444456799999999999998
No 126
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=25.51 E-value=22 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.6
Q ss_pred cCCChhHHHHHHHHHH-hhcCcc
Q 010019 80 LGMEPTEALQDAIQTL-SLQGVD 101 (520)
Q Consensus 80 ~~m~p~eal~~aI~qf-~~qgvd 101 (520)
-++.||.++++.|++| +.+|++
T Consensus 56 ~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 56 AGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCEECTTTHHHHHHHHHHSCCC
T ss_pred hhCccCHHHHHHHHHHHHHcCCC
Confidence 4788999999999999 667763
No 127
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=24.45 E-value=57 Score=25.48 Aligned_cols=34 Identities=12% Similarity=0.282 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHhhcC
Q 010019 66 QEAFDEVVKENMEDLGM-EPTEALQDAIQTLSLQG 99 (520)
Q Consensus 66 QetfDe~V~eni~~~~m-~p~eal~~aI~qf~~qg 99 (520)
-+.+.+.|.+.+..=.- +..|+++++|..|+.+.
T Consensus 11 ~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re 45 (88)
T 3kxe_C 11 GDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENE 45 (88)
T ss_dssp CHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Confidence 56677788888877665 78899999999987653
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.43 E-value=1.7e+02 Score=25.47 Aligned_cols=72 Identities=8% Similarity=-0.039 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L 200 (520)
..+++.|+..+.+ +++..+..||.-|..+-+. =+..+...++....+.-|+.+++.. .++.+...++..|
T Consensus 51 keA~ral~krl~~-------~n~~vql~AL~LLd~~vkN-cG~~Fh~evas~~Fl~el~~l~~~~--~~~~Vk~kil~li 120 (163)
T 1x5b_A 51 KDCLKAIMKRVNH-------KVPHVALQALTLLGACVAN-CGKIFHLEVCSRDFATEVRAVIKNK--AHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHHHTC-------SSHHHHHHHHHHHHHHHHH-TCHHHHHHHTSHHHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH-hhHHHHHHHhhHHHHHHHHHHHccC--CCHHHHHHHHHHH
Confidence 4678888888887 6788888888777655552 1466777777778888888888642 3567766666655
Q ss_pred HH
Q 010019 201 AL 202 (520)
Q Consensus 201 a~ 202 (520)
-.
T Consensus 121 ~~ 122 (163)
T 1x5b_A 121 VE 122 (163)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 129
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=23.78 E-value=5.4e+02 Score=26.04 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHHhhCCCchHHHHHhcC-CHHHHHHHHhc-c-----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019 371 NKTVARICCSLLSKLAGSDSNKSAIIENG-GMDKLIVVSAR-F-----SDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g-~l~~Lv~lL~~-~-----~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G 443 (520)
++..+--++++|.||-.++.....+.... ..+.+++.+.. + ..+..++-.+...+.|++.-....+ .+..
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~e 351 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLE 351 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTT
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHH
Confidence 35677889999999988887545454332 23555655421 1 1135677777777888886211100 0112
Q ss_pred cHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHhhhChhhHH
Q 010019 444 SGDLAIQAMLK-------FPNAQQLQRSSCFMIRNLVARNPENRK 481 (520)
Q Consensus 444 ~i~~lv~~L~~-------~~~~~~vqk~A~~aL~nL~~~~~e~~~ 481 (520)
....+++++.. ...+.+...-+..||.||+...++.+.
T Consensus 352 l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~ 396 (425)
T 3pst_A 352 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 396 (425)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34456666651 124778888899999999866665543
No 130
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=23.08 E-value=86 Score=20.76 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 010019 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTL 95 (520)
Q Consensus 63 ~isQetfDe~V~eni~~~~m~p~eal~~aI~qf 95 (520)
.|||||.-|..+. +++ -+.+|+||
T Consensus 21 eitqetlheyaqk----lgl-----nqqaieqf 44 (52)
T 1y66_A 21 EITQETLHEYAQK----LGL-----NQQAIEQF 44 (52)
T ss_dssp HHHHHHHHHHHHH----HHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCc-----cHHHHHHH
Confidence 5889888877654 222 15677775
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.76 E-value=2e+02 Score=24.23 Aligned_cols=72 Identities=13% Similarity=0.006 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (520)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L 200 (520)
..+++.|+..+.+ +++..+..||.-|..+.+. -+......++....+.-|+.+++.. ++.+...++..+
T Consensus 41 k~a~rai~Krl~~-------~n~~~ql~AL~LLe~~vkN-cG~~f~~evas~~Fl~el~~l~~~~---~~~Vk~kil~li 109 (140)
T 3ldz_A 41 KDCLRSIMRRVNH-------KDPHVAMQALTLLGACVSN-CGKIFHLEVCSRDFASEVSNVLNKG---HPKVCEKLKALM 109 (140)
T ss_dssp HHHHHHHHHHHTC-------SSHHHHHHHHHHHHHHHHH-SCHHHHHHHSSHHHHHHHHHHHHHS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-------CChHHHHHHHHHHHHHHHh-cCHHHHHHHhhHHHHHHHHHHhccC---CHHHHHHHHHHH
Confidence 4678888888887 6777888887766554442 2455566666666777778877653 566766666655
Q ss_pred HHh
Q 010019 201 ALL 203 (520)
Q Consensus 201 a~l 203 (520)
-.-
T Consensus 110 ~~W 112 (140)
T 3ldz_A 110 VEW 112 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 132
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.63 E-value=73 Score=25.46 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCcchhhhhhHHHHHHHHHHHHhhcCCChhHHH-HHHHHHHhhcCcc
Q 010019 56 GPPKTVRTISQEAFDEVVKENMEDLGMEPTEAL-QDAIQTLSLQGVD 101 (520)
Q Consensus 56 ~~~~~~~~isQetfDe~V~eni~~~~m~p~eal-~~aI~qf~~qgvd 101 (520)
||.|++=.+ +-++|-.++|+++|++++ ...+++|...++|
T Consensus 20 ~~~~~~Vsa------e~L~eEfdefGi~~~d~VldKc~ELC~~y~ld 60 (101)
T 2keb_A 20 GPGSMSASA------QQLAEELQIFGLDCEEALIEKLVELCVQYGQN 60 (101)
T ss_dssp ----CCCCH------HHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCC
T ss_pred CCchhhccH------HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 566655433 457788889999999987 7788888887774
No 133
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=20.15 E-value=1.7e+02 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=16.2
Q ss_pred hcCCChhHHHHHHHHHHhhcCcccC
Q 010019 79 DLGMEPTEALQDAIQTLSLQGVDLS 103 (520)
Q Consensus 79 ~~~m~p~eal~~aI~qf~~qgvdls 103 (520)
..||+++.-.+.....|+.+|+-|.
T Consensus 22 ~~~M~~~rlrk~I~k~FKL~Gl~Lr 46 (99)
T 2v6z_M 22 QVDMAPERLRSRALSAFKLRGLLLR 46 (99)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCEEC
T ss_pred hhcccHHHHHHHHHHHhhhcceeec
Confidence 4578886555666666999998663
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.00 E-value=2.1e+02 Score=23.99 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019 371 NKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (520)
Q Consensus 371 ~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa 429 (520)
++.++..|+.+|-.+..| +.....|.+...+..++.++.+ .++.|++.++..+...+
T Consensus 55 n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~--~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 55 DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK--GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHH
Confidence 446667777777776643 2334456556667777887763 47889998888887655
Done!