Query 010020
Match_columns 520
No_of_seqs 225 out of 1624
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 18:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tj7_A Argininosuccinate lyase 100.0 3E-105 9E-110 855.2 44.8 455 60-514 2-457 (457)
2 2e9f_A Argininosuccinate lyase 100.0 8E-106 3E-110 860.2 40.5 458 59-516 3-462 (462)
3 1k7w_A Delta 2 crystallin; eye 100.0 2E-105 8E-110 858.0 40.4 461 57-518 6-466 (468)
4 3r6q_A Aspartase; aspartate am 100.0 6E-87 2E-91 712.7 40.7 427 33-490 6-462 (468)
5 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 9.8E-88 3.3E-92 720.2 33.1 430 58-512 4-452 (454)
6 1jsw_A L-aspartase, L-aspartat 100.0 1.9E-86 6.7E-91 712.6 36.3 425 32-490 5-465 (478)
7 4adm_A Fumarase C, fumarate hy 100.0 2.1E-86 7.3E-91 710.7 35.2 428 31-488 31-486 (495)
8 3c8t_A Fumarate lyase; structu 100.0 5.9E-86 2E-90 705.6 38.4 421 58-510 4-444 (451)
9 1fur_A Fumarase C, FUMC; hydro 100.0 3.8E-86 1.3E-90 708.0 36.1 423 33-489 5-461 (467)
10 1vdk_A Fumarase C, fumarate hy 100.0 2.7E-86 9.2E-91 709.5 34.6 425 33-491 4-463 (466)
11 1c3c_A Protein (adenylosuccina 100.0 1.5E-85 5.2E-90 698.6 37.1 412 65-506 3-428 (429)
12 4eei_A Adenylosuccinate lyase; 100.0 5E-86 1.7E-90 701.9 33.1 415 64-511 3-435 (438)
13 2pfm_A Adenylosuccinate lyase; 100.0 7E-85 2.4E-89 695.6 41.1 412 64-505 12-439 (444)
14 1yfm_A Fumarase, YFUM; lyase, 100.0 1.4E-85 4.6E-90 704.8 33.4 423 32-488 28-485 (488)
15 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 1.1E-84 3.8E-89 695.9 38.6 419 61-511 5-447 (450)
16 3ocf_A Fumarate lyase:delta cr 100.0 6.1E-85 2.1E-89 696.8 36.3 426 29-486 20-477 (478)
17 3e04_A Fumarase, fumarate hydr 100.0 4.1E-83 1.4E-87 681.5 34.7 420 32-486 30-485 (490)
18 3gtd_A Fumarase C, fumarate hy 100.0 2E-82 6.8E-87 675.8 36.5 421 32-486 25-479 (482)
19 1dof_A Adenylosuccinate lyase; 100.0 1.1E-82 3.8E-87 670.9 28.8 377 62-467 6-398 (403)
20 4hgv_A Fumarase C, fumarate hy 100.0 2.1E-81 7E-86 673.5 35.1 428 32-498 36-495 (495)
21 1yis_A Adenylosuccinate lyase; 100.0 6.2E-80 2.1E-84 663.4 31.1 432 61-518 10-468 (478)
22 2j91_A Adenylosuccinate lyase; 100.0 1.2E-78 4E-83 655.6 32.3 429 61-518 38-496 (503)
23 2qga_B Adenylosuccinate lyase; 100.0 5.8E-79 2E-83 653.5 25.4 420 60-507 9-459 (465)
24 2ptr_A Adenylosuccinate lyase; 100.0 1E-76 3.5E-81 635.6 29.7 411 60-505 10-455 (462)
25 3bhg_A Adenylosuccinate lyase; 100.0 1.8E-74 6E-79 617.9 33.7 415 60-505 13-458 (459)
26 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 7.3E-73 2.5E-77 587.1 21.9 341 58-416 7-355 (359)
27 1x5b_A Signal transducing adap 23.0 78 0.0027 28.1 4.3 58 379-439 30-88 (163)
28 3dcf_A Transcriptional regulat 20.2 4.1E+02 0.014 22.7 9.3 85 111-207 31-126 (218)
No 1
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=2.6e-105 Score=855.18 Aligned_cols=455 Identities=44% Similarity=0.705 Sum_probs=441.1
Q ss_pred ccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHhcCCcccc-cCC
Q 010020 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWR-TDR 138 (520)
Q Consensus 60 ~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~-~~~ 138 (520)
++||+||++++++.+.+|+.+..+|+.++++++.+++|||++|.++|+||++++++|.++|++|..+...++|+++ +.+
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 81 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDA 81 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCC
T ss_pred cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999888888889887 679
Q ss_pred CchhhhHHHHHHHHhCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCcc
Q 010020 139 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218 (520)
Q Consensus 139 ~dv~~~ie~~l~e~~g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~ 218 (520)
||+|||+|+++.+.+|+.|+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+||||
T Consensus 82 ~dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~ 161 (457)
T 1tj7_A 82 EDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQ 161 (457)
T ss_dssp SSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEE
T ss_pred CcHHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcCCe
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCccHHHHHHhcCCCCCCCCccccccchHHHHHHHHH
Q 010020 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSA 298 (520)
Q Consensus 219 P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~~~r~~la~~LG~~~~~~n~~~~~~~rd~~~e~~~~ 298 (520)
||||||||++|+++|.||++||.+++++++.+||||+|++||++++||+++++.|||+.+..|+++|+++||+++|++++
T Consensus 162 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~~ 241 (457)
T 1tj7_A 162 PVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSA 241 (457)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHH
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCCHHHHHHHcCCCCCCCChHHHHHccHHHHHHHHH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccccc
Q 010020 299 NSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 378 (520)
Q Consensus 299 la~la~~L~ria~Dl~ll~s~e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~ 378 (520)
++.++++|+|||+||++|+|+|||||++|+.+.+|||||||||||+.+|.++++|++++|+..+++.+++++|++||||+
T Consensus 242 l~~~a~~L~kia~Di~ll~s~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~RDl 321 (457)
T 1tj7_A 242 AAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDM 321 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHhhcch
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCC
Q 010020 379 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQ 458 (520)
Q Consensus 379 ~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~ 458 (520)
|++|..+++++.++..++..+..+++||+||+++|++++.++++++|+++++|+++|+|||+||++|+++++.|.++|++
T Consensus 322 ~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~~~m~~~l~~~~~~at~l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~ 401 (457)
T 1tj7_A 322 QEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKP 401 (457)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhcCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhHHHHhhcCCCChHHHHhccChhHhhhhcccCCCccHHHHHHHHHHHHHHhh
Q 010020 459 LQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLG 514 (520)
Q Consensus 459 l~el~~~~~~~~~~~~~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~~~~~~l~ 514 (520)
+.|+.+++...+.+.+++++.+++||+.+++.|.++||++|+.|+++++.+++.++
T Consensus 402 l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~~~~~~l~ 457 (457)
T 1tj7_A 402 LEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG 457 (457)
T ss_dssp GGGSCHHHHTTTCTTCCTTHHHHTSHHHHHHTCCSTTCCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhcHHHHHHhCCHHHHHhccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999888676777778889999999999999999999999999999999988763
No 2
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=8.2e-106 Score=860.17 Aligned_cols=458 Identities=50% Similarity=0.820 Sum_probs=436.1
Q ss_pred cccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHhcCCcccccCC
Q 010020 59 VKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138 (520)
Q Consensus 59 ~~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 138 (520)
++|||+||++++++.+++|+.+..+|+.++++++.+++|||++|.++|+||++++++|.++|++|..+...++|++++++
T Consensus 3 ~~~~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~~ 82 (462)
T 2e9f_A 3 HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWREEL 82 (462)
T ss_dssp -----------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCSCCCGGG
T ss_pred ccccCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcccCCcCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999988888999998889
Q ss_pred CchhhhHHHHHHHHhCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cccccccCCC
Q 010020 139 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGL--IVPGYTHLQR 216 (520)
Q Consensus 139 ~dv~~~ie~~l~e~~g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t--~m~GrTH~Q~ 216 (520)
||+||++++++.+.+|+.|+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|+++ +||||||+||
T Consensus 83 ~dv~~~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~~~GrTHlQ~ 162 (462)
T 2e9f_A 83 EDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQR 162 (462)
T ss_dssp CSHHHHHHHHHHHHHCTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEEETTEE
T ss_pred CchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCccccCcccCcc
Confidence 99999999999999998899999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCccHHHHHHhcCCCCCCCCccccccchHHHHHHH
Q 010020 217 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFL 296 (520)
Q Consensus 217 A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~~~r~~la~~LG~~~~~~n~~~~~~~rd~~~e~~ 296 (520)
||||||||||++|+++|.|+++||.+++++++.+||||+|++||++++||+++++.|||+.+..|+++|+++||+++|++
T Consensus 163 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~~a~~LG~~~~~~n~~~~~~~rD~~~e~~ 242 (462)
T 2e9f_A 163 AQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVL 242 (462)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCSSCCCHHHHHHHTTCSEECSCHHHHHHCCHHHHHHH
T ss_pred CeeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCCCCCCHHHHHHHhCCCCCCCCcHHHHHccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccc
Q 010020 297 SANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNR 376 (520)
Q Consensus 297 ~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~er 376 (520)
++++.++++|+|||+||++|+|+|||||++|+.+.+|||||||||||+.+|.++++|++++|+..+++.+++++|++|||
T Consensus 243 ~~l~~~a~~L~kia~Dl~ll~s~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~r 322 (462)
T 2e9f_A 243 SALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLAYNK 322 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCEECSSSSSCEECHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSBCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchHhhh
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcC
Q 010020 377 DLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKE 456 (520)
Q Consensus 377 D~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g 456 (520)
|+|++|..+++++.++..++..+..+++||+||+++|++++.++++++|+++++|+++|+|||+||++|+++++.|.++|
T Consensus 323 Dl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g 402 (462)
T 2e9f_A 323 DLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEG 402 (462)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHHHHHGGGCEECHHHHHHHHSCSSTTHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHhcCccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHhhHHHHhhcCCCChHHHHhccChhHhhhhcccCCCccHHHHHHHHHHHHHHhhhh
Q 010020 457 CQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGIN 516 (520)
Q Consensus 457 ~~l~el~~~~~~~~~~~~~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~~~~~~l~~~ 516 (520)
+++.|+.+++++.+.+.+++++.+++||+.+++.|.++||++|++|+++++++++.++.|
T Consensus 403 ~~l~e~~~~~~~~~~~~l~~~l~~~ldp~~~~~~r~~~gG~a~~~v~~~i~~~~~~l~~~ 462 (462)
T 2e9f_A 403 RALKDLTLEELQAHHPLFAEDALPLLRLETAIHRRRSYGGTAPEAVRERLEEAKKEVGLD 462 (462)
T ss_dssp CCGGGCCHHHHHHHCTTCCGGGGGGGSHHHHTTSCCSTTSSCHHHHHHHHHHHHHHHCCC
T ss_pred cCHHHHHHHHHHHhhhhhHHHHHHhCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHHhhcC
Confidence 999999998878888888888999999999999999999999999999999999988754
No 3
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=2.3e-105 Score=858.04 Aligned_cols=461 Identities=42% Similarity=0.698 Sum_probs=436.8
Q ss_pred cccccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHhcCCccccc
Q 010020 57 KEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRT 136 (520)
Q Consensus 57 ~~~~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~ 136 (520)
|++++||+||+++++++.++|+.+..+|+.++++++.+++|||++|.++|+||++.+++|.++|++|..+...++|++++
T Consensus 6 ~~~~~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~ 85 (468)
T 1k7w_A 6 RGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQ 85 (468)
T ss_dssp -------------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCT
T ss_pred CcccccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcccCccCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999888889999988
Q ss_pred CCCchhhhHHHHHHHHhCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCC
Q 010020 137 DREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 216 (520)
Q Consensus 137 ~~~dv~~~ie~~l~e~~g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~ 216 (520)
++||+||++++++.+.+|+.|+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+||
T Consensus 86 ~~~dv~m~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~ 165 (468)
T 1k7w_A 86 SDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQK 165 (468)
T ss_dssp TCCSHHHHHHHHHHHHHCGGGGGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred CCCchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcC
Confidence 89999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCccHHHHHHhcCCCCCCCCccccccchHHHHHHH
Q 010020 217 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFL 296 (520)
Q Consensus 217 A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~~~r~~la~~LG~~~~~~n~~~~~~~rd~~~e~~ 296 (520)
||||||||||++|+++|.||++||.+++++++.+||||+|++||+++++|+++++.|||+.+..|+++|+++||+++|++
T Consensus 166 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~la~~LG~~~~~~n~~~~~~~rD~~~e~~ 245 (468)
T 1k7w_A 166 AQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFL 245 (468)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCTTCCCHHHHHHHHTCSEECSCHHHHHHCCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCCCChHHHHHHcCCCCCCCChHHHHHccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccc
Q 010020 297 SANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNR 376 (520)
Q Consensus 297 ~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~er 376 (520)
++++.++++|+|||+||++|+|+|||||++|+.+.+|||||||||||+.+|.++++|++++|+..+++.+++++|++|||
T Consensus 246 ~~l~~la~~L~kia~Dl~ll~s~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~r 325 (468)
T 1k7w_A 246 SFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNK 325 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCEEETTEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCchHhhh
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcC
Q 010020 377 DLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKE 456 (520)
Q Consensus 377 D~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g 456 (520)
|+|++|..+++++.++..++..+..+++||+||+++|++++.++ +++|+++++|+++|+|||+||++|+++++.|.++|
T Consensus 326 Dl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~-~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g 404 (468)
T 1k7w_A 326 DLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPE-MLATDLALYLVRKGVPFRQAHTASGKAVHLAETKG 404 (468)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCCGG-GGHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHhCCCEECHHHHHHHhhCC-ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CChhHhhHHHHhhcCCCChHHHHhccChhHhhhhcccCCCccHHHHHHHHHHHHHHhhhhcc
Q 010020 457 CQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGINRS 518 (520)
Q Consensus 457 ~~l~el~~~~~~~~~~~~~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~~~~~~l~~~~~ 518 (520)
+++.|+.+++++.+.+.+++++.+++||+.+++.|.++||++|+.|+++++.++..+++++.
T Consensus 405 ~~l~e~~~~~~~~~~~~l~~~~~~~ldp~~~~~~r~~~GG~a~~~v~~~i~~~~~~l~~~~~ 466 (468)
T 1k7w_A 405 ITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE 466 (468)
T ss_dssp CCGGGCCHHHHHHHCTTCCGGGGGGSCHHHHHTTCCSTTSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhhHHHHHHhCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999887888888888899999999999999999999999999999999999987764
No 4
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=6e-87 Score=712.65 Aligned_cols=427 Identities=21% Similarity=0.232 Sum_probs=388.6
Q ss_pred cccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccc-hhccHHHHHHHHHHHHHHHHHHHHcCCCCHH
Q 010020 33 SLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTES-ISYDKALYKHDIMGSKAHASMLAKQGLISDS 111 (520)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~-~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~ 111 (520)
+.|.|.+|+.+||.|+|||+ +|.+.+++|+.+ .+++..++++++.+++|+|++|.++|+||++
T Consensus 6 r~e~d~~g~~~vp~~~~yg~----------------qt~ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~ 69 (468)
T 3r6q_A 6 RIEKDFLGEKEIPKDAYYGV----------------QTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKE 69 (468)
T ss_dssp EEEEETTEEEEECTTCCCCH----------------HHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCccccCCCccCCcccccCH----------------HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 68999999999999998875 799999999866 4778999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccc----CCCchhhhHH----HHHHHHhC-CCCCc--cc------CCCCchhHHHHHH
Q 010020 112 DKNSILRGLDEIERQIEAGKFMWRT----DREDVHMNIE----AALTDIIG-EPAKK--LH------TARSRNDQVLTDF 174 (520)
Q Consensus 112 ~a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie----~~l~e~~g-~~g~~--lH------~G~S~nDi~~Ta~ 174 (520)
++++|.++|++|..+...++|++++ .++|+|||++ +++.+.+| +.|+| || +||||||+++|++
T Consensus 70 ~a~aI~~a~~~i~~~~~~~~f~~~~~~~g~gt~~nmnvnevia~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~ 149 (468)
T 3r6q_A 70 VGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTAT 149 (468)
T ss_dssp HHHHHHHHHHHHHTTTTGGGCCSCSSCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCccHHhccccccccccHHHHHHHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHH
Confidence 9999999999999887778898764 2789999987 46677889 56776 88 6999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCc
Q 010020 175 RLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA 254 (520)
Q Consensus 175 ~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg 254 (520)
+|++|+++..|.+.|..|+++|.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+||||
T Consensus 150 ~L~~r~~l~~l~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGg 229 (468)
T 3r6q_A 150 HIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGA 229 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccHHH-------HHHhcCCCC-CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cce
Q 010020 255 CALAGTGLPIDRFM-------TAEALEFTA-PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---FGF 323 (520)
Q Consensus 255 ~a~~Gt~~~~~r~~-------la~~LG~~~-~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e---~ge 323 (520)
||+ ||++++++++ +++.|||+. +..|+++|+++||+++|++++++.++++|+|||+||++|+|+| |||
T Consensus 230 tAv-GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~ge 308 (468)
T 3r6q_A 230 TAV-GTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSE 308 (468)
T ss_dssp TTT-SSCTTCCHHHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCC
T ss_pred eec-CCCCCCChHHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Confidence 888 9999999876 699999996 5789999999999999999999999999999999999999877 999
Q ss_pred eeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCccccccccccccccHHHHHHHHHHHHHHHH-HH
Q 010020 324 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSA-EF 402 (520)
Q Consensus 324 v~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~~~~~~~l~~~~~~~~~~l~~~~-~~ 402 (520)
|++|+ .++|||||||||||+.+|.++++|++++|+..+++.++++.+++.+-.....+.++++++.++..++..|. .|
T Consensus 309 i~lp~-~~~GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~ 387 (468)
T 3r6q_A 309 IVLPA-RQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENC 387 (468)
T ss_dssp EECCC-CSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCC-CCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 69999999999999999999999999999999998887654443332223456679999999999999999 89
Q ss_pred HhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCChHHHHhcc
Q 010020 403 AQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYL 482 (520)
Q Consensus 403 l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~~~~~~~~l 482 (520)
++||+||++||++|+..++.++|+|++++ +|+.+++++++|.++|++++|+.+++ ....++++.+++
T Consensus 388 i~gl~vn~erm~~~l~~s~~l~t~La~~l---------gy~~a~~ia~~a~~~g~~l~e~~~~~----~~ls~eel~~~l 454 (468)
T 3r6q_A 388 LKGIKANEERMKEYVEKSIGIITAINPHV---------GYETAAKLAREAYLTGESIRELCIKY----GVLTEEQLNEIL 454 (468)
T ss_dssp GGGCEECHHHHHHHHHTCSTTHHHHHHHH---------HHHHHHHHHHHHHHTCCCSHHHHHHH----TSSCHHHHHHHS
T ss_pred HccCEECHHHHHHHHHcCCchHHhcchhh---------HHHHHHHHHHHHHHhCCCHHHHHHHc----CCCCHHHHHHHc
Confidence 99999999999999999999999999998 89999999999999999999998764 123478899999
Q ss_pred ChhHhhhh
Q 010020 483 GVENAIRK 490 (520)
Q Consensus 483 dp~~~v~~ 490 (520)
||+.++.+
T Consensus 455 dp~~~~~~ 462 (468)
T 3r6q_A 455 NPYEMIHP 462 (468)
T ss_dssp CHHHHTSC
T ss_pred CHHHhcCC
Confidence 99987654
No 5
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=9.8e-88 Score=720.20 Aligned_cols=430 Identities=21% Similarity=0.259 Sum_probs=372.9
Q ss_pred ccccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHhcCCcc--cc
Q 010020 58 EVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFM--WR 135 (520)
Q Consensus 58 ~~~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al~~i~~~~~~~~~~--~~ 135 (520)
++.+|++||+. .++...|++. .++++++.+++|||++|.++|+||++.+++|.++|++|...+..+.+. ..
T Consensus 4 ~~~~~~~ry~~--~~~~~~~sd~-----~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~ 76 (454)
T 1q5n_A 4 MSQLYASLFYQ--RDVTEIFSDR-----ALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATG 76 (454)
T ss_dssp --CTTHHHHSC--HHHHHHTSHH-----HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHHHCCHHHHHHHHH
T ss_pred CCCccccccCc--HHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHhh
Confidence 35689999974 6888999864 677899999999999999999999999999999998765322111111 11
Q ss_pred cCCCchhhhHHHHHHHHh----CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 010020 136 TDREDVHMNIEAALTDII----GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGY 211 (520)
Q Consensus 136 ~~~~dv~~~ie~~l~e~~----g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~Gr 211 (520)
...||| ++++..|.+.+ |+.|+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|+|++||||
T Consensus 77 ~~~~dV-ia~~~~l~e~~g~~~g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~Gr 155 (454)
T 1q5n_A 77 LAGNIA-IPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGR 155 (454)
T ss_dssp HHSSSH-HHHHHHHHHHHHTTCTTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ccCCcH-HHHHHHHHHHhccccCCccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecc
Confidence 248999 78899999999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCC------CccHHHHHHhcCCCCCCCCcccc
Q 010020 212 THLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL------PIDRFMTAEALEFTAPMRNSIDA 285 (520)
Q Consensus 212 TH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~------~~~r~~la~~LG~~~~~~n~~~~ 285 (520)
||+||||||||||||++|+++|.|+++||.+++++++.+|||||+ ||+. +.+++++++.|||+.+..| |
T Consensus 156 THlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAv--GT~~~~~~~~~~~~~~~a~~LG~~~~~~~---~ 230 (454)
T 1q5n_A 156 TWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAV--GSLASLQDQGSIVVEAYAKQLKLGQTACT---W 230 (454)
T ss_dssp ETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTT--SSCGGGTTCHHHHHHHHHHHHTCBCCSSC---C
T ss_pred ccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHh--hcCcccccccHHHHHHHHHHhCcCCCCCC---C
Confidence 999999999999999999999999999999999999999999855 6655 5689999999999987654 6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccCC-CCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHH
Q 010020 286 VSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDS-VSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 364 (520)
Q Consensus 286 ~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~-~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~ 364 (520)
+.+||+++|++++++.++++|+|||+||++|+++||||+.+|.. .++|||||||||||+.+|.++++|++++|+.++++
T Consensus 231 ~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~ 310 (454)
T 1q5n_A 231 HGERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIY 310 (454)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999998854 78999999999999999999999999999999987
Q ss_pred HHHccCccccccccccc---cccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcc--cChhHHHHHHHHHHHcCCChh
Q 010020 365 TLCKGLPLAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP--AGYLDATTLADYLVNKQVPFR 439 (520)
Q Consensus 365 ~~~~~~p~~~erD~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~Lv~~G~~fr 439 (520)
. ++|++||||+++. |..+|+++.++..++..+..|++||+||++||++++. .++++||+++.+|+++ +|||
T Consensus 311 ~---~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~-ig~~ 386 (454)
T 1q5n_A 311 Q---SMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPH-MGRL 386 (454)
T ss_dssp H---TTCCCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHHH-HCHH
T ss_pred H---hccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChhHHHHHHHHHHHh-cCHH
Confidence 4 4689999999874 6778999999999999999999999999999999994 7999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-hHHHHhccChhHhhhhcccCCCccHHHHHHHHHHHHHH
Q 010020 440 TSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-DKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAK 512 (520)
Q Consensus 440 ~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~~~~~~ 512 (520)
+||++|+++++.|.++|+++.|++.++ +.+.+.+ ++++.+++||+. +.|+++++|+++++.+|+.
T Consensus 387 ~A~~iv~~~~~~a~~~g~~l~e~~~~~-~~~~~~l~~~~l~~~ldp~~-------~~g~a~~~v~~~~~~~~~~ 452 (454)
T 1q5n_A 387 NAHHVVEAACKTAVAEQKHLKDIISQV-DEVKQYFNPSQLDEIFKPES-------YLGNIQDQIDAVLQEAKGE 452 (454)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHTTC-HHHHTTCCHHHHHHHTCGGG-------GCTTHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhcc-hhhhcCCCHHHHHHhCCHHH-------HcCcHHHHHHHHHHHHhhh
Confidence 999999999999999999999998765 4565666 468999999996 8899999999999866653
No 6
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=1.9e-86 Score=712.63 Aligned_cols=425 Identities=22% Similarity=0.249 Sum_probs=386.4
Q ss_pred ccccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccch-hc--cHHHHHHHHHHHHHHHHHHHHcCCC
Q 010020 32 SSLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESI-SY--DKALYKHDIMGSKAHASMLAKQGLI 108 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~-~~--~~~l~~~~i~~~~A~a~al~e~GiI 108 (520)
-+.|.|.+|+.+||.|.|| |+ +|++.+++|+.+. ++ +..++++++.+++|||+||+++|+|
T Consensus 5 ~r~e~d~~g~~~vp~~~~~------------g~----~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii 68 (478)
T 1jsw_A 5 IRIEEDLLGTREVPADAYY------------GV----HTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTI 68 (478)
T ss_dssp EEEEECSSCEEEEESSCCC------------CH----HHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCcccccCCCcCCCCcccc------------ch----HHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3679999999999777655 45 7999999999875 66 8899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHH-HHHhcCCccccc----CCCchhhhHHH----HHHHHhC-CCCC--ccc------CCCCchhHH
Q 010020 109 SDSDKNSILRGLDEIE-RQIEAGKFMWRT----DREDVHMNIEA----ALTDIIG-EPAK--KLH------TARSRNDQV 170 (520)
Q Consensus 109 ~~~~a~~I~~al~~i~-~~~~~~~~~~~~----~~~dv~~~ie~----~l~e~~g-~~g~--~lH------~G~S~nDi~ 170 (520)
|++++++|.++|++|. ++...++|++++ .++|+|||+|. ++.+.+| +.|+ +|| +||||||++
T Consensus 69 ~~~~a~~I~~a~~~i~~~~~~~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~ 148 (478)
T 1jsw_A 69 PKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAY 148 (478)
T ss_dssp CHHHHHHHHHHHHHHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcchhccCCccchhhccCcccccccHHHHHHHHHHHHcCccccccccccccccccCCCChhhHH
Confidence 9999999999999999 887788999876 59999999985 6678888 5676 677 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 010020 171 LTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFC 250 (520)
Q Consensus 171 ~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~ 250 (520)
+|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+
T Consensus 149 ~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~ 228 (478)
T 1jsw_A 149 PTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEV 228 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCccHHH-------HHHhcCCC-CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q 010020 251 PLGACALAGTGLPIDRFM-------TAEALEFT-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE--- 319 (520)
Q Consensus 251 plGg~a~~Gt~~~~~r~~-------la~~LG~~-~~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~--- 319 (520)
||||||+ ||+++++|++ +++.|||+ .+..|+++++++||+++|++++++.++++|+|||+||++|+|+
T Consensus 229 ~lGg~Av-GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~ 307 (478)
T 1jsw_A 229 NLGATAI-GTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRA 307 (478)
T ss_dssp CCSCCSS-SSCSSCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTT
T ss_pred CCCCccc-cCCccCCcchHHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999898 9999999876 99999999 6788999999999999999999999999999999999999976
Q ss_pred CcceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCccccccccc--cccccHHHHHHHHHHHHH
Q 010020 320 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQ--EDKEPTFDSVKTIVGMLE 397 (520)
Q Consensus 320 e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~~--~~~~~l~~~~~~~~~~l~ 397 (520)
|||||++|+ +++|||||||||||+.+|.++++|++++|+..+++.++++ .++++|.. ..+.++++++.++..++.
T Consensus 308 e~gei~lp~-~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~--~~~e~~~~~p~~~~~l~~s~~~l~~~l~ 384 (478)
T 1jsw_A 308 GLNEINLPE-LQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEA--GQLQLNVMEPVIGQAMFESVHILTNACY 384 (478)
T ss_dssp SCCCEECCC-CSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CBTTBCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEECCC-CCCCCCCCCcccCCHHHHHHHHHHHHHHhHHHHHHHHHhc--cchhhcccchHHHHHHHHHHHHHHHHHH
Confidence 799999997 8999999999999999999999999999999999887764 46777753 346789999999999999
Q ss_pred HHH-HHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-h
Q 010020 398 VSA-EFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-D 475 (520)
Q Consensus 398 ~~~-~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~ 475 (520)
.+. .|++||+||++||++++..++.+++++++++ +|+.++++++.|.++|++++++.+++ +.+ +
T Consensus 385 ~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~l---------g~~~a~~~v~~a~~~g~~l~e~~~~~-----~~l~~ 450 (478)
T 1jsw_A 385 NLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFI---------GHHNGDIVGKICAETGKSVREVVLER-----GLLTE 450 (478)
T ss_dssp HHHHHTGGGCEECHHHHHHHHTTCTTCGGGTHHHH---------CHHHHHHHHHHHHTTCCCHHHHHHHH-----TSSCS
T ss_pred HHHHHHHccCeecHHHHHHHHHhCchHHHHHHHhh---------hHHHHHHHHHHHHHhCCCHHHHHHhc-----CCCCH
Confidence 998 6999999999999999999999999999987 69999999999999999999998864 234 6
Q ss_pred HHHHhccChhHhhhh
Q 010020 476 KDVYEYLGVENAIRK 490 (520)
Q Consensus 476 ~~~~~~ldp~~~v~~ 490 (520)
+++.+++||+.++.+
T Consensus 451 ~~~~~~ldp~~~~~~ 465 (478)
T 1jsw_A 451 AELDDIFSVQNLMHP 465 (478)
T ss_dssp HHHHTSCCC------
T ss_pred HHHHHhCCHHHHhCC
Confidence 889999999985554
No 7
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=2.1e-86 Score=710.74 Aligned_cols=428 Identities=21% Similarity=0.243 Sum_probs=373.9
Q ss_pred cccccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccch-hccHHHHHHHHHHHHHHHHHHHHcCCCC
Q 010020 31 RSSLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESI-SYDKALYKHDIMGSKAHASMLAKQGLIS 109 (520)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~~A~a~al~e~GiI~ 109 (520)
.-+.|.|.+|+.+||.|+|| |+ +|++.+++|+.+. +++..++++++.+++|||++|+++|+||
T Consensus 31 ~~r~e~d~~g~~~vp~~~~~------------G~----~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~~~Gil~ 94 (495)
T 4adm_A 31 NYRIEHDTMGEVRVPAKALW------------RA----QTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSDLGLLA 94 (495)
T ss_dssp CEEEEEETTEEEEEETTCSC------------CH----HHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccCCccCcCCCccCChhhhc------------Cc----hhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35789999999998777655 45 8999999999775 6788999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCccccc----CCCchhhhHHHHHHH--HhCCCCCcccC------CCCchhHHHHHHHHH
Q 010020 110 DSDKNSILRGLDEIERQIEAGKFMWRT----DREDVHMNIEAALTD--IIGEPAKKLHT------ARSRNDQVLTDFRLW 177 (520)
Q Consensus 110 ~~~a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~e--~~g~~g~~lH~------G~S~nDi~~Ta~~L~ 177 (520)
++++++|.++|++|..+...++|++++ .++|+|||+|..+.+ .+| |+|||+ ||||||+++|+++|+
T Consensus 95 ~~~a~aI~~a~~ei~~~~~~~~f~~~~~q~g~gt~~nmnvnevia~ra~lG--G~~vH~~dhVn~g~SsNDv~~Ta~~L~ 172 (495)
T 4adm_A 95 PEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAKG--GVTLHPNDDVNMSQSSNDTFPTATHIA 172 (495)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHT--TCCCCTTTTTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCCCcchhhccccccccccHHHHHHHHHHhC--CCccCcccccCCCCChhhHHHHHHHHH
Confidence 999999999999999887788899764 389999999999988 457 777776 999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccc
Q 010020 178 CRDAID-TIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA 256 (520)
Q Consensus 178 lr~~l~-~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a 256 (520)
+|+++. .|.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||+|
T Consensus 173 lr~~l~~~l~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtA 252 (495)
T 4adm_A 173 ATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTA 252 (495)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Confidence 999985 6999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCccHH-------HHHHhcCC-C-CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccee
Q 010020 257 LAGTGLPIDRF-------MTAEALEF-T-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFGFI 324 (520)
Q Consensus 257 ~~Gt~~~~~r~-------~la~~LG~-~-~~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s---~e~gev 324 (520)
+ ||++++++. +++++||| + .+..|+++|+++||+++|++++++.++++|+|||+||++|+| +|||||
T Consensus 253 v-GT~~~~~~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei 331 (495)
T 4adm_A 253 V-GTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEI 331 (495)
T ss_dssp T-SSCTTSCTTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCE
T ss_pred e-cCCccCChhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceE
Confidence 8 999998874 49999999 4 578899999999999999999999999999999999999998 569999
Q ss_pred eccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCccccccccccccccHHHHHHHHHHHHHHH-HHHH
Q 010020 325 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVS-AEFA 403 (520)
Q Consensus 325 ~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~~~~~~~l~~~~~~~~~~l~~~-~~~l 403 (520)
++|+ .++|||||||||||+.+|.++++|++++|+..++..++++.+++.+......+.++++++.++..++..+ ..|+
T Consensus 332 ~lp~-~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~l 410 (495)
T 4adm_A 332 QLPD-LQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCI 410 (495)
T ss_dssp ECCC-C---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred ECCC-CCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 7999999999999999999999999999999999888876555544333334456899999999999999 6899
Q ss_pred hhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCC-CChHHHHhcc
Q 010020 404 QNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNP-VFDKDVYEYL 482 (520)
Q Consensus 404 ~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~-~~~~~~~~~l 482 (520)
+||+||++||++++..++.++|+|++++ +|+.+.+++++|.++|++++|+.+++ ..+.. ..++++.+++
T Consensus 411 ~gl~vn~erm~~~l~~s~~l~t~La~~i---------gy~~a~~ia~~a~~~g~~l~e~~~~~-~~~~~~ls~eel~~~l 480 (495)
T 4adm_A 411 AGLTANVEHLRRLAESSPSIVTPLNSAI---------GYEEAAAVAKQALKERKTIRQTVIDR-GLIGDRLSIEDLDRRL 480 (495)
T ss_dssp GGCEECHHHHHHHHHHCGGGGGGGHHHH---------CHHHHHHHHHHHHHHTCCHHHHHHHT-TCCBTTBCHHHHHHHT
T ss_pred ccCEECHHHHHHHHhccccHHHHhhhhh---------hHHHHHHHHHHHHHhCCCHHHHHHhC-cccccCCCHHHHHHHc
Confidence 9999999999999999999999999988 56677777889999999999998764 22222 3478899999
Q ss_pred ChhHhh
Q 010020 483 GVENAI 488 (520)
Q Consensus 483 dp~~~v 488 (520)
||+.++
T Consensus 481 dp~~~~ 486 (495)
T 4adm_A 481 DVLAMA 486 (495)
T ss_dssp CHHHHT
T ss_pred CHHHhc
Confidence 999744
No 8
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=5.9e-86 Score=705.56 Aligned_cols=421 Identities=20% Similarity=0.242 Sum_probs=366.8
Q ss_pred ccccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHH-------HHHHHhcC
Q 010020 58 EVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDE-------IERQIEAG 130 (520)
Q Consensus 58 ~~~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al~~-------i~~~~~~~ 130 (520)
++.+|++||+. .++...|++. .++++++.+++|||++|+++|+||++.+++|.++|++ +..+.
T Consensus 4 ~~~~~~~ry~~--~~~~~~~sd~-----~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~~~~~--- 73 (451)
T 3c8t_A 4 DSPLYGRSFAD--DKMRELFSAQ-----SFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLRDDT--- 73 (451)
T ss_dssp --CCSSCCCSC--HHHHHHTSHH-----HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHHHHHH---
T ss_pred CCCccccccCc--HHHHHHcCCH-----HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHHHHHh---
Confidence 45789999974 6899999864 5678999999999999999999999999999999863 11111
Q ss_pred CcccccCCCchhhhHHHHHHHHhCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Q 010020 131 KFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPG 210 (520)
Q Consensus 131 ~~~~~~~~~dv~~~ie~~l~e~~g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~G 210 (520)
....||| +++++.|.+.+|+.|+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|++++|||
T Consensus 74 ----~~~~~dV-ia~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~G 148 (451)
T 3c8t_A 74 ----EIVGYPI-LPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAG 148 (451)
T ss_dssp ----HHHSSSH-HHHHHHHHHHHGGGGGGSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred ----hcCCCcH-HHHHHHHHHHcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeec
Confidence 1247999 68899999999977999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCc------cHHHHHHhcCCCCCCCCccc
Q 010020 211 YTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI------DRFMTAEALEFTAPMRNSID 284 (520)
Q Consensus 211 rTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~~------~r~~la~~LG~~~~~~n~~~ 284 (520)
|||+||||||||||||++|+++|.|+++||.+++++++.+|||||+ ||+.++ +++++++.|||+.+..|
T Consensus 149 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAv--GT~~~~~~~~~~~~~~~a~~LGl~~~~~~--- 223 (451)
T 3c8t_A 149 RTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGAS--GTLASLGTRGLDVQRELARELNLGVPSIT--- 223 (451)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCCTT--SSCGGGTTCHHHHHHHHHHHHTCBCCSSC---
T ss_pred ccCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhh--hcCcccccccHHHHHHHHHHhCCCCCCCC---
Confidence 9999999999999999999999999999999999999999999854 777777 89999999999987654
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccCC-CCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHH
Q 010020 285 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDS-VSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363 (520)
Q Consensus 285 ~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~-~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~ 363 (520)
|+.+||+++|++++++.++++|+|||+||++|+++||||+.+|.. .++|||||||||||+.+|.++++|++++|+.+++
T Consensus 224 ~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~ 303 (451)
T 3c8t_A 224 WHSARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSM 303 (451)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC---------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999998853 7899999999999999999999999999999998
Q ss_pred HHHHccCccccccccccc---cccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcc--cChhHHHHHHHHHHHcCCCh
Q 010020 364 LTLCKGLPLAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP--AGYLDATTLADYLVNKQVPF 438 (520)
Q Consensus 364 ~~~~~~~p~~~erD~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~Lv~~G~~f 438 (520)
+.+ +|.+||||+++. |..+++++.++..++..+..|++||+||++||++++. .++++||+++.+|+++ +||
T Consensus 304 ~~~---~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~-ig~ 379 (451)
T 3c8t_A 304 LDA---MIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPH-TGR 379 (451)
T ss_dssp HHH---TCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTGGGHHHHHHHHHHH-HCH
T ss_pred Hhc---CchhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccChHHHHHHHHHHHHh-CCH
Confidence 754 589999999864 6778999999999999999999999999999999995 7999999999999999 999
Q ss_pred hhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-hHHHHhccChhHhhhhcccCCCccHHHHHHHHHHHH
Q 010020 439 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-DKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWV 510 (520)
Q Consensus 439 r~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~~~~ 510 (520)
|+||++|+++++.|.++|+++.|++.++ +.+.+.+ ++++.+++||+. +.|+++.+++++++..+
T Consensus 380 ~~A~~iv~~~~~~a~~~g~~l~e~~~~~-~~~~~~l~~~~l~~~ldp~~-------~~~~~~~~~~~~~~~~~ 444 (451)
T 3c8t_A 380 KEAHDIVYLGCRRAVEDKTGLFEVLRTM-PEVAKPLGEEALRDLTDPRN-------YLGSAGAMVDNVLGGRE 444 (451)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHTTC-HHHHHHHCHHHHHHHTCGGG-------CCTTHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhcC-hhhhccCCHHHHHHhCCHHH-------HhchHHHHHHHHHHhcc
Confidence 9999999999999999999999998765 3343444 468889999995 99999999999886443
No 9
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=3.8e-86 Score=708.02 Aligned_cols=423 Identities=20% Similarity=0.238 Sum_probs=385.4
Q ss_pred cccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccchhc-cHHHHHHHHHHHHHHHHHHHHcCCCCHH
Q 010020 33 SLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESISY-DKALYKHDIMGSKAHASMLAKQGLISDS 111 (520)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~~~-~~~l~~~~i~~~~A~a~al~e~GiI~~~ 111 (520)
+.|.|.+|+.+||.|+ |||+ +|++.+++|+.+... +..++++++.+++|||+||+++|+||++
T Consensus 5 r~e~d~~g~~~vp~~~------------~~g~----~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~ 68 (467)
T 1fur_A 5 RSEKDSMGAIDVPADK------------LWGA----QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEE 68 (467)
T ss_dssp EEEEETTEEEEECTTC------------CCCH----HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred CccccCCCCccCCccc------------ccch----hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 6799999999987666 4555 799999999988755 9999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccc----CCCchhhhHHHHH----HHHhC-CCCCc--cc------CCCCchhHHHHHH
Q 010020 112 DKNSILRGLDEIERQIEAGKFMWRT----DREDVHMNIEAAL----TDIIG-EPAKK--LH------TARSRNDQVLTDF 174 (520)
Q Consensus 112 ~a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l----~e~~g-~~g~~--lH------~G~S~nDi~~Ta~ 174 (520)
++++|.++|++|.++...++|++++ .++|+|||++..+ .+.+| +.|+| || +|+||||+++|++
T Consensus 69 ~a~~I~~a~~~i~~~~~~~~f~~~~~q~g~~~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~ 148 (467)
T 1fur_A 69 KASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAM 148 (467)
T ss_dssp HHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccchhhhccccccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHH
Confidence 9999999999999887778888765 4799999999866 88898 88888 88 9999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCC
Q 010020 175 RLWCRDAIDT-IVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 253 (520)
Q Consensus 175 ~L~lr~~l~~-l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plG 253 (520)
+|++|+++.. |.+.|..|+++|.++|++|++++||||||+||||||||||||++|+++|.||++||.+++++++.+|||
T Consensus 149 ~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lG 228 (467)
T 1fur_A 149 HVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALG 228 (467)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccHHH-------HHHhcCCCC-CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cc
Q 010020 254 ACALAGTGLPIDRFM-------TAEALEFTA-PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---FG 322 (520)
Q Consensus 254 g~a~~Gt~~~~~r~~-------la~~LG~~~-~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e---~g 322 (520)
|||+ ||+++++|.+ +|+.|||+. +..|+++|+++||+++|++++++.++++|+|||+||++|+|+| ||
T Consensus 229 gtAv-GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~g 307 (467)
T 1fur_A 229 GTAV-GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIG 307 (467)
T ss_dssp CTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCC
T ss_pred cchh-cCCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCce
Confidence 9898 9999999866 999999994 7889999999999999999999999999999999999999776 99
Q ss_pred eeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccccccc--ccccHHHHHHHHHHHHHHHH
Q 010020 323 FITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQE--DKEPTFDSVKTIVGMLEVSA 400 (520)
Q Consensus 323 ev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~~~--~~~~l~~~~~~~~~~l~~~~ 400 (520)
||++|+ .++|||||||||||+.+|.++++|++++|+..+++.++++ .++|||... ....+++++.++..++..+.
T Consensus 308 ei~lp~-~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~--g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~ 384 (467)
T 1fur_A 308 EISIPE-NEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGAS--GNFELNVFRPMVIHNFLQSVRLLADGMESFN 384 (467)
T ss_dssp SEECCC-CSCCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CBTTBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEECCC-CCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 4699999999999999999999999999999999987763 577788532 22478899999999999995
Q ss_pred -HHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-hHHH
Q 010020 401 -EFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-DKDV 478 (520)
Q Consensus 401 -~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~~~~ 478 (520)
.|++||+||++||++++..++.++|+|++++ +|+.+++++++|.++|++++|+..++ ..+ ++++
T Consensus 385 ~~~l~gl~vn~erm~~~l~~~~~l~t~La~~l---------g~~~a~~~~~~a~~~g~~l~e~~~~~-----~~l~~~e~ 450 (467)
T 1fur_A 385 KHCAVGIEPNRERINQLLNESLMLVTALNTHI---------GYDKAAEIAKKAHKEGLTLKAAALAL-----GYLSEAEF 450 (467)
T ss_dssp HHTGGGCEECHHHHHHHHHHCSTTHHHHHTTS---------CHHHHHHHHHHHHHHTCCHHHHHHHT-----TSSCHHHH
T ss_pred HHHHccCeeCHHHHHHHHHhCccHHHHhHhhc---------cHHHHHHHHHHHHHcCCCHHHHHHhc-----CCCCHHHH
Confidence 5999999999999999999998899888765 69999999999999999999998764 334 6789
Q ss_pred HhccChhHhhh
Q 010020 479 YEYLGVENAIR 489 (520)
Q Consensus 479 ~~~ldp~~~v~ 489 (520)
.+++||+.++.
T Consensus 451 ~~~ldp~~~~~ 461 (467)
T 1fur_A 451 DSWVRPEQMVG 461 (467)
T ss_dssp HHHCCGGGC--
T ss_pred HHhcCHHHHhC
Confidence 99999997443
No 10
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=2.7e-86 Score=709.51 Aligned_cols=425 Identities=20% Similarity=0.246 Sum_probs=386.1
Q ss_pred cccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccch-hc--cHHHHHHHHHHHHHHHHHHHHcCCCC
Q 010020 33 SLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESI-SY--DKALYKHDIMGSKAHASMLAKQGLIS 109 (520)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~-~~--~~~l~~~~i~~~~A~a~al~e~GiI~ 109 (520)
+.|.|.+|+.+||.|+ +||+ +|++.+++|+.+. ++ +..++++++.+++|||+||+++|+||
T Consensus 4 r~e~d~~g~~~vp~~~------------~~g~----~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~ 67 (466)
T 1vdk_A 4 RIERDTMGEVRVPADK------------YWGA----QTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELP 67 (466)
T ss_dssp CEEEETTEEEECCTTC------------CCCH----HHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cccccCCCCcCCCccc------------ccch----hhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 6789999999987666 4555 7999999999885 36 89999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCccccc----CCCchhhhHHHHH----HHHhC-CCC-Cccc------CCCCchhHHHHH
Q 010020 110 DSDKNSILRGLDEIERQIEAGKFMWRT----DREDVHMNIEAAL----TDIIG-EPA-KKLH------TARSRNDQVLTD 173 (520)
Q Consensus 110 ~~~a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l----~e~~g-~~g-~~lH------~G~S~nDi~~Ta 173 (520)
++++++|.++|++|.++...++|++++ .++|+|||++..+ .+.+| +.| ++|| +|+||||+++|+
T Consensus 68 ~~~a~~I~~a~~~i~~~~~~~~f~~~~~q~~~~~~~~mn~~~via~~a~e~~g~~~g~~~lHp~~~Vn~g~SsnD~~~Ta 147 (466)
T 1vdk_A 68 EEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTA 147 (466)
T ss_dssp HHHHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCCCchhhhccccccccccHHHHHHHHHHHHhCccccccccccccCcCCCCChhhHHHHH
Confidence 999999999999999887778888876 5899999999876 88999 777 8888 999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 010020 174 FRLWCRDAID-TIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL 252 (520)
Q Consensus 174 ~~L~lr~~l~-~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~pl 252 (520)
++|++|+++. .|.+.|..|+++|.++|++|++++||||||+||||||||||||++|+++|.||++||.+++++++.+||
T Consensus 148 ~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~l 227 (466)
T 1vdk_A 148 MYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAI 227 (466)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCccHHH-------HHHhcCCCC-CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---c
Q 010020 253 GACALAGTGLPIDRFM-------TAEALEFTA-PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---F 321 (520)
Q Consensus 253 Gg~a~~Gt~~~~~r~~-------la~~LG~~~-~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e---~ 321 (520)
||||+ ||+++++|++ +|+.|||+. +..|+++++++||+++|++++++.++++|+|||+||++|+|+| |
T Consensus 228 Gg~Av-GT~~~~~~~~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~ 306 (466)
T 1vdk_A 228 GGTAV-GTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGI 306 (466)
T ss_dssp TCTTT-SSCTTSCTTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSC
T ss_pred Ccccc-CCCccCCchHHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 99898 9999999865 799999994 7889999999999999999999999999999999999999776 9
Q ss_pred ceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccccc--ccccccHHHHHHHHHHHHHHH
Q 010020 322 GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL--QEDKEPTFDSVKTIVGMLEVS 399 (520)
Q Consensus 322 gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~--~~~~~~l~~~~~~~~~~l~~~ 399 (520)
|||++|+. ++|||||||||||+.+|.++++|++++|+..+++.++.+ .+++++. ...+.++++++.++..++..+
T Consensus 307 gei~lp~~-~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~--g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~ 383 (466)
T 1vdk_A 307 GEITIPAN-EPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQ--GNFQLNVYKPVMAYSTLESINLLADAVASF 383 (466)
T ss_dssp CSEECCCC-SCCSSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CBTTBCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEECCCC-CCcCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999974 699999999999999999999999999999999988864 3555553 223558999999999999999
Q ss_pred H-HHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-hHH
Q 010020 400 A-EFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-DKD 477 (520)
Q Consensus 400 ~-~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~~~ 477 (520)
. .|++||+||++||++++..++.++|+|+++| +|+.+++++++|.++|++++|+..++ +.+ +++
T Consensus 384 ~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~l---------g~~~a~~~v~~a~~~g~~l~e~~~~~-----~~l~~~~ 449 (466)
T 1vdk_A 384 DAHLAQGIEPNLERIEEYLQKNPMLATALNKAI---------GYDKAAEIVKKALKEKKTLKQAALEL-----GYLTEEE 449 (466)
T ss_dssp HHHTGGGCEECHHHHHHHHTTCGGGGHHHHHHH---------CSHHHHTTTTTSCC--CCHHHHHHHT-----SSSCHHH
T ss_pred HHHHhccCEEcHHHHHHHHHhcchHHHHHHHhc---------cHHHHHHHHHHHHHcCCCHHHHHHhc-----CCCCHHH
Confidence 5 6999999999999999999999999999987 58889999999989999999998764 344 678
Q ss_pred HHhccChhHhhhhc
Q 010020 478 VYEYLGVENAIRKF 491 (520)
Q Consensus 478 ~~~~ldp~~~v~~r 491 (520)
+.+++||+.++.++
T Consensus 450 ~~~~ldp~~~~~~~ 463 (466)
T 1vdk_A 450 FDRIVVPMRLAKPH 463 (466)
T ss_dssp HHHHCCHHHHHCCC
T ss_pred HHHHcCHHHhcCCC
Confidence 99999999877654
No 11
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=1.5e-85 Score=698.59 Aligned_cols=412 Identities=19% Similarity=0.224 Sum_probs=369.9
Q ss_pred CCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHH----HHHHHHHhcCCcccccCCCc
Q 010020 65 RFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGL----DEIERQIEAGKFMWRTDRED 140 (520)
Q Consensus 65 r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al----~~i~~~~~~~~~~~~~~~~d 140 (520)
||+ ..++...|++ +.++++++.+++|||++|+++|+||++.+++|.++| +.+..+... ..||
T Consensus 3 ry~--~~~~~~~~sd-----~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~d~~~i~~~~~~-------~~~d 68 (429)
T 1c3c_A 3 RYS--LSPMKDLWTE-----EAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFKKIEEK-------TNHD 68 (429)
T ss_dssp GGC--CTTHHHHTSH-----HHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHHHHHHH-------HCCH
T ss_pred Ccc--cHHHHHHcCh-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHHhc-------cCCC
Confidence 564 2567778875 467889999999999999999999999999999994 666655321 3789
Q ss_pred hhhhHHHHHHHHhCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCcccc
Q 010020 141 VHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPV 220 (520)
Q Consensus 141 v~~~ie~~l~e~~g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~ 220 (520)
| +++++.|.+.+|+.|+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+||||||
T Consensus 69 V-ia~~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~ 147 (429)
T 1c3c_A 69 V-VAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPT 147 (429)
T ss_dssp H-HHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEE
T ss_pred h-HHHHHHHHHHcCcccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCcCCCcCcCC
Confidence 9 788999999999779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCccH---HHHHHhcCCCCCCCCccccccchHHHHHHHH
Q 010020 221 LLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR---FMTAEALEFTAPMRNSIDAVSDRDFVLEFLS 297 (520)
Q Consensus 221 TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~~~r---~~la~~LG~~~~~~n~~~~~~~rd~~~e~~~ 297 (520)
||||||++|+++|.|+++||.+++++++.+|||||+ ||+.++++ +++++.|||+.+..| ||+.+||+++|+++
T Consensus 148 T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAv--Gt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~e~~~ 223 (429)
T 1c3c_A 148 SFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAV--GNYANVPPEVEEKALSYLGLKPEPVS--TQVVPRDRHAFYLS 223 (429)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTT--SSCSSSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhh--cCCccCCHHHHHHHHHHcCCCCCCCC--cCccCcHHHHHHHH
Confidence 999999999999999999999999999999999854 66666665 899999999987765 78899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcceeeccCC-CCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccc
Q 010020 298 ANSIIAIHLSRLGEEWVLWASEEFGFITPSDS-VSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNR 376 (520)
Q Consensus 298 ~la~la~~L~ria~Dl~ll~s~e~gev~l~~~-~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~er 376 (520)
+++.++++|+|||+||++|+++||||+.+|.. +++|||||||||||+.+|.++++|++++|+..+++. ++|.+|||
T Consensus 224 ~l~~~a~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~~er 300 (429)
T 1c3c_A 224 TLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLE---NIALWHER 300 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHHH---TTCCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhccccccCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh---cCCccccc
Confidence 99999999999999999999999999998853 789999999999999999999999999999998865 55899999
Q ss_pred cccc---ccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcc--cChhHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 010020 377 DLQE---DKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP--AGYLDATTLADYLVNKQVPFRTSHDIVGKAVAL 451 (520)
Q Consensus 377 D~~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~ 451 (520)
|+++ +|..+++++.++..++..+..+++||+||++||++++. .++++||+++.+|+++|+|||+||++|+++++.
T Consensus 301 d~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~a~~la~~L~~~gig~~~A~~iv~~~~~~ 380 (429)
T 1c3c_A 301 DISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALK 380 (429)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9987 46778999999999999999999999999999999995 788999999999999999999999999999999
Q ss_pred HHHcCCChhHhhHHHHhhcCCCC-hHHHHhccChhHhhhhcccCCCccHHHHHHHH
Q 010020 452 CVSKECQLQDLSLDEMRSLNPVF-DKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 506 (520)
Q Consensus 452 a~~~g~~l~el~~~~~~~~~~~~-~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l 506 (520)
|.++|+++.|++.++ +.+.+.+ ++++.+++||+. |.|+++.++++++
T Consensus 381 a~~~g~~l~e~~~~~-~~~~~~l~~~~l~~~ldp~~-------~~~~a~~~~~~~~ 428 (429)
T 1c3c_A 381 TWNSEKHFLEYLLED-EEVKKLVTKEELEELFDISY-------YLKHVDHIFERFE 428 (429)
T ss_dssp HHTSSSCHHHHHHTC-HHHHTTCCHHHHHHTTCTHH-------HHTTHHHHHHTTC
T ss_pred HHHhCCCHHHHHhCC-hhhhccCCHHHHHHhCCHHH-------HhhhHHHHHHHHh
Confidence 999999999998865 4455556 458999999996 8899999988754
No 12
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=5e-86 Score=701.88 Aligned_cols=415 Identities=16% Similarity=0.172 Sum_probs=354.7
Q ss_pred CCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHH----HHHHHHHhcCCcccccCCC
Q 010020 64 GRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGL----DEIERQIEAGKFMWRTDRE 139 (520)
Q Consensus 64 ~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al----~~i~~~~~~~~~~~~~~~~ 139 (520)
.||+ +.++...|++.. .++..++++.|+++++++ |+||++.+++|.+++ +++.+... ..+|
T Consensus 3 ~ry~--~~~m~~~fs~~~-----~~~~~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~~d~~~i~~~e~-------~~~h 67 (438)
T 4eei_A 3 KRYD--VAEISKIWADEN-----KYAKMLEVELAILEALED-RMVPKGTAAEIRARAQIRPERVDEIEK-------VTKH 67 (438)
T ss_dssp GGGC--CHHHHHHHSHHH-----HHHHHHHHHHHHHHHGGG-TTSCTTHHHHHHHHCCCCHHHHHHHHH-------HHSC
T ss_pred cccC--cHHHHHHcChHH-----HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhhCCCCHHHHHHHHH-------hcCC
Confidence 3674 678999999765 455677888999999999 999999999998874 22322211 2378
Q ss_pred chhhhHHHHHHHHhCCC-CCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCcc
Q 010020 140 DVHMNIEAALTDIIGEP-AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218 (520)
Q Consensus 140 dv~~~ie~~l~e~~g~~-g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~ 218 (520)
||+ ++++.|.+.+|+. |+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|+|+|||||||+||||
T Consensus 68 dV~-a~~~~l~e~~g~~~~~~iH~G~SsnDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~ 146 (438)
T 4eei_A 68 DII-AFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAE 146 (438)
T ss_dssp HHH-HHHHHHHTTSCTTTTTTTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEE
T ss_pred CHH-HHHHHHHHHcCHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccCccCC
Confidence 994 8999999999965 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCccH---HHHHHhcCCCCCCCCccccccchHHHHHH
Q 010020 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR---FMTAEALEFTAPMRNSIDAVSDRDFVLEF 295 (520)
Q Consensus 219 P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~~~r---~~la~~LG~~~~~~n~~~~~~~rd~~~e~ 295 (520)
|||||||+++|+++|.|+++||.+++++++.+|||| |+ ||++++++ +++++.|||+.+ .++ +|+.+||+++|+
T Consensus 147 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgG-Av-GT~~~~~~~~~~~~a~~LG~~~~-~~~-~~v~~rD~~~e~ 222 (438)
T 4eei_A 147 PMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSG-AV-GNYCILTTEDEKKAADILGLPVE-EVS-TQVIPRDRIAKL 222 (438)
T ss_dssp EEETHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCC-TT-SCCSSSCHHHHHHHHHHHTCCBC-SSC-SSSCCTHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcc-Hh-hCcccccHHHHHHHHHHcCCCCC-Ccc-ccccccHHHHHH
Confidence 999999999999999999999999999999999995 55 99999988 789999999843 344 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcceeecc-CCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccc
Q 010020 296 LSANSIIAIHLSRLGEEWVLWASEEFGFITPS-DSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAY 374 (520)
Q Consensus 296 ~~~la~la~~L~ria~Dl~ll~s~e~gev~l~-~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~ 374 (520)
+++++.++++|+|||+||++|+++||||+.+| .++++|||||||||||+.+|.++++|++++|++.+ +++++|++|
T Consensus 223 ~~~l~~~a~~L~kia~Di~ll~~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~---~~~~~~~~~ 299 (438)
T 4eei_A 223 ISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSI---ALENCVLWH 299 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTCSEECCC------------CCCCHHHHHHHHHHHHHHHHHHH---HHHTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeccccccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH---HHhccchhc
Confidence 99999999999999999999999999999987 56789999999999999999999999999999854 456789999
Q ss_pred ccccccc---cccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcc--cChhHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 010020 375 NRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP--AGYLDATTLADYLVNKQVPFRTSHDIVGKAV 449 (520)
Q Consensus 375 erD~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v 449 (520)
|||++++ |..+++++.++..++..+..++++|+||+++|++++. .+++++|+++++|+++|+|||+||++|++++
T Consensus 300 erdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~~Lv~~g~~~~~Ah~~v~~~~ 379 (438)
T 4eei_A 300 ERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVA 379 (438)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHHHHHHSSCCHHHHHHHHHHC-
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999876 7789999999999999999999999999999999995 5889999999999999999999999999999
Q ss_pred HHHHHcCCChhHhhHHHHhhcCCCC----hHHHHhccChhHhhhhcccCCCccHHHHHHHHHHHHH
Q 010020 450 ALCVSKECQLQDLSLDEMRSLNPVF----DKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVA 511 (520)
Q Consensus 450 ~~a~~~g~~l~el~~~~~~~~~~~~----~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~~~~~ 511 (520)
++|.+ |+++.|+++++++.+...+ +.++.+++| .|||++|+.|+++++..++
T Consensus 380 ~~a~~-g~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~gG~a~~~v~~~l~~~~~ 435 (438)
T 4eei_A 380 FDLKQ-GESFSKKLQKVMHDEHNIILDIPEMDFEGIKK---------TYLKEIDHVFDRSVKARGE 435 (438)
T ss_dssp -------CCHHHHHHHHHHHTTCCCCCCCCCSHHHHHH---------HHTTTHHHHHHHHCSCC--
T ss_pred HHHhc-CCCHHHHHHHHHhhhhccccCCCHHHHHHHHH---------hcCCchHHHHHHHHHHhhc
Confidence 99999 9999999999877776654 566777777 3999999999999865444
No 13
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=7e-85 Score=695.57 Aligned_cols=412 Identities=20% Similarity=0.239 Sum_probs=376.0
Q ss_pred CCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHH----HHHHHHHhcCCcccccCCC
Q 010020 64 GRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGL----DEIERQIEAGKFMWRTDRE 139 (520)
Q Consensus 64 ~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al----~~i~~~~~~~~~~~~~~~~ 139 (520)
.||+ +.++...|++ ..++++++.+++|||++|.++|+||++.+++|.++| +.+..+.. ...|
T Consensus 12 ~~~~--~~~~~~i~sd-----~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~d~~~i~~~~~-------~~~~ 77 (444)
T 2pfm_A 12 SRYT--RPEMGAIWTE-----ENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDRIYEIEK-------ETRH 77 (444)
T ss_dssp CTTC--CHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHCCCCHHHHHHHHH-------HHCC
T ss_pred Hhcc--hHHHHHHcCh-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHhc-------cCCC
Confidence 5886 4788888875 467889999999999999999999999999999995 66665532 1478
Q ss_pred chhhhHHHHHHHHh--CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCc
Q 010020 140 DVHMNIEAALTDII--GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRA 217 (520)
Q Consensus 140 dv~~~ie~~l~e~~--g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A 217 (520)
|| +++++.|.+.+ |+.|+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|||
T Consensus 78 dV-ia~~~~l~e~~g~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A 156 (444)
T 2pfm_A 78 DV-VAFTRAVSETPALGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHA 156 (444)
T ss_dssp HH-HHHHHHHHTCTTCCGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEE
T ss_pred CH-HHHHHHHHHHcCCCcccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCccc
Confidence 89 78899999999 7789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCccH---HHHHHhcCCCCCCCCccccccchHHHHH
Q 010020 218 QPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR---FMTAEALEFTAPMRNSIDAVSDRDFVLE 294 (520)
Q Consensus 218 ~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~~~r---~~la~~LG~~~~~~n~~~~~~~rd~~~e 294 (520)
|||||||||++|+++|.|+++||.+++++++.+|||||+ ||+.++++ +++++.|||+.+..| ||+.+||+++|
T Consensus 157 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAv--Gt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~e 232 (444)
T 2pfm_A 157 EPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAV--GTYANIDPFVEKYVCENLGLEAAPIS--TQTLQRDRHAH 232 (444)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTT--SSCTTSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHHH
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhh--ccCCcCCHHHHHHHHHHhCCCCCCCC--cCccCcHHHHH
Confidence 999999999999999999999999999999999999854 66666655 899999999987765 68899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcceeeccCC-CCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCccc
Q 010020 295 FLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDS-VSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 373 (520)
Q Consensus 295 ~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~-~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~ 373 (520)
++++++.++++|+|||+||++|+++||||+.+|.. .++|||||||||||+.+|.++++|++++|+..+++. ++|.+
T Consensus 233 ~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~ 309 (444)
T 2pfm_A 233 YMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYE---NVPLW 309 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHH---TSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcCccCCcccCCHHHHHHHHHHHHHHHHHHHHHH---hCccc
Confidence 99999999999999999999999999999998853 789999999999999999999999999999998864 45899
Q ss_pred ccccccc---ccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcc--cChhHHHHHHHHHHHcCCChhhHHHHHHHH
Q 010020 374 YNRDLQE---DKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP--AGYLDATTLADYLVNKQVPFRTSHDIVGKA 448 (520)
Q Consensus 374 ~erD~~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~ 448 (520)
||||+++ +|..+++++.++..++..+..+++||+||++||++++. .++++||+++.+|+++|+|||+||++|+++
T Consensus 310 ~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~la~~L~~~gig~~~A~~iv~~~ 389 (444)
T 2pfm_A 310 HERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPK 389 (444)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999987 46788899999999999999999999999999999995 788999999999999999999999999999
Q ss_pred HHHHHHcCCChhHhhHHHHhhcCCCC-hHHHHhccChhHhhhhcccCCCccHHHHHHH
Q 010020 449 VALCVSKECQLQDLSLDEMRSLNPVF-DKDVYEYLGVENAIRKFSSFGSTGSACVTEQ 505 (520)
Q Consensus 449 v~~a~~~g~~l~el~~~~~~~~~~~~-~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~ 505 (520)
++.|.++|+++.|++.++ +.+.+.+ ++++.+++||+. |.|+++++++++
T Consensus 390 ~~~a~~~g~~l~e~~~~~-~~~~~~l~~~~l~~~ldp~~-------~~~~a~~~~~~~ 439 (444)
T 2pfm_A 390 AMEAWETQVQFKELVEAD-ERITSKLTQEEINECFNYEH-------HMQHVDTIFERL 439 (444)
T ss_dssp HHHHHHHTCCHHHHHHTC-HHHHTTSCHHHHHHHTCGGG-------GGTTHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHhcc-hhhhccCCHHHHHHhCCHHH-------HHhHHHHHHHHH
Confidence 999999999999998865 4455666 468999999995 899999999875
No 14
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=1.4e-85 Score=704.80 Aligned_cols=423 Identities=19% Similarity=0.229 Sum_probs=379.3
Q ss_pred ccccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccchh---ccHHHHHHHHHHHHHHHHHHHHcCCC
Q 010020 32 SSLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESIS---YDKALYKHDIMGSKAHASMLAKQGLI 108 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~~---~~~~l~~~~i~~~~A~a~al~e~GiI 108 (520)
-+.|.|.+|+.+||.|+|| |+ +|++.+++|+.+.. ++..++++++.+++|||+||+++|+|
T Consensus 28 ~r~e~d~~g~~~vp~~~~~------------g~----~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil 91 (488)
T 1yfm_A 28 FRTETDAFGEIHVPADKYW------------GA----QTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGL 91 (488)
T ss_dssp EEEECSSSCCEEEESSCCC------------CH----HHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCcccccCCCcCCCccchh------------ch----HHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4789999999998776644 55 89999999998864 78999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHHHHhcCCccccc----CCCchhhhHHHHH----HHHhC-CCC-Cccc------CCCCchhHHHH
Q 010020 109 SDSDKNSILRGLDEIERQIEAGKFMWRT----DREDVHMNIEAAL----TDIIG-EPA-KKLH------TARSRNDQVLT 172 (520)
Q Consensus 109 ~~~~a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l----~e~~g-~~g-~~lH------~G~S~nDi~~T 172 (520)
|++.+++|.++|++|.++...++|++++ .++|+|||++..+ .|.+| +.| ++|| +||||||+++|
T Consensus 92 ~~~~a~aI~~a~~ei~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~vHp~d~Vn~g~SsNDv~~T 171 (488)
T 1yfm_A 92 DPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPT 171 (488)
T ss_dssp CHHHHHHHHHHHHHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccCCCcchhhccccccccccHHHHHHHHHHHHhCccccCCccCcccCcCCCCChhhHHHH
Confidence 9999999999999999887778899876 5899999998866 48888 677 7888 99999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 010020 173 DFRLWCRDAID-TIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCP 251 (520)
Q Consensus 173 a~~L~lr~~l~-~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~p 251 (520)
+++|++|+++. .|.+.|..|+++|.++|++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+|
T Consensus 172 a~~L~lr~~l~~~l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~ 251 (488)
T 1yfm_A 172 VMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLA 251 (488)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCccHHH-------HHHhcCCCC-CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---
Q 010020 252 LGACALAGTGLPIDRFM-------TAEALEFTA-PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE--- 320 (520)
Q Consensus 252 lGg~a~~Gt~~~~~r~~-------la~~LG~~~-~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e--- 320 (520)
|||||+ ||++++++++ +|+.|||+. +..|+++++++||+++|++++++.++++|+|||+||++|+|+|
T Consensus 252 lGgtAv-GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g 330 (488)
T 1yfm_A 252 QGGTAV-GTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCG 330 (488)
T ss_dssp TTCTTT-SSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSS
T ss_pred CCCccc-cCCccCChhHHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 999898 9999999864 799999994 7889999999999999999999999999999999999999776
Q ss_pred cceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccccc--ccccccHHHHHHHHHHHHHH
Q 010020 321 FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL--QEDKEPTFDSVKTIVGMLEV 398 (520)
Q Consensus 321 ~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~--~~~~~~l~~~~~~~~~~l~~ 398 (520)
||||++|+ .++|||||||||||+.+|.++++|++++|+..+++.++.+ .+++++. ...+.++++++.++..++..
T Consensus 331 ~gei~lp~-~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~--g~~eln~~~p~~~~~l~~s~~~l~~~l~~ 407 (488)
T 1yfm_A 331 YHELMLPE-NEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQ--GQFELNVFKPVMIANLLNSIRLITDAAYS 407 (488)
T ss_dssp CCCEECCC-CSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CBTTBCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEECCC-CCCcCCCcccccCcHHHHHHHHHHHHHHhHHHHHHHHHhc--ccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 4699999999999999999999999999999999988864 3555553 22345799999999999999
Q ss_pred HH-HHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-hH
Q 010020 399 SA-EFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-DK 476 (520)
Q Consensus 399 ~~-~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~~ 476 (520)
+. .|++||+||++||++++..++.++|+|++++ +|+.+++++++|.++|++++|+.+++ +.+ ++
T Consensus 408 ~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~l---------g~~~a~~i~~~a~~~g~~l~e~~~~~-----~~l~~e 473 (488)
T 1yfm_A 408 FRVHCVEGIKANEPRIHELLTKSLMLVTALNPKI---------GYDAASKVAKNAHKKGITLKESALEL-----GVLTEK 473 (488)
T ss_dssp HHHHTGGGCEECHHHHHHHHHHCSGGGTTTGGGT---------CHHHHHHHHHHHHHHTCCHHHHHHHT-----TSCCHH
T ss_pred HHHHHHccCEECHHHHHHHHccCchHHHHHHHhc---------cHHHHHHHHHHHHHhCCCHHHHHHhc-----CCCCHH
Confidence 96 5999999999999999999998899888866 59999999999999999999998764 344 67
Q ss_pred HHHhccChhHhh
Q 010020 477 DVYEYLGVENAI 488 (520)
Q Consensus 477 ~~~~~ldp~~~v 488 (520)
++.+++||+.++
T Consensus 474 el~~~ldp~~~~ 485 (488)
T 1yfm_A 474 EFDEWVVPEHML 485 (488)
T ss_dssp HHHHHCCGGGCC
T ss_pred HHHHhcCHHHhc
Confidence 899999999733
No 15
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=1.1e-84 Score=695.90 Aligned_cols=419 Identities=24% Similarity=0.299 Sum_probs=369.3
Q ss_pred cccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHH-------HHHHHhcCCcc
Q 010020 61 LWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDE-------IERQIEAGKFM 133 (520)
Q Consensus 61 ~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al~~-------i~~~~~~~~~~ 133 (520)
+++ ||.. +.++...|++. .++++++.+++|||++|.++|+||++.+++|.++|++ +..+..
T Consensus 5 ~~~-ry~~-~~~~~~i~s~~-----~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~~~~~~----- 72 (450)
T 1re5_A 5 LFD-AYFT-APAMREIFSDR-----GRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIA----- 72 (450)
T ss_dssp TTH-HHHS-CHHHHHHTSHH-----HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHHHHHH-----
T ss_pred chh-hccC-CHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHh-----
Confidence 344 6753 57888888754 6788999999999999999999999999999999853 222211
Q ss_pred cccCCCchhhhHHHHHHHHhC---CC-CCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 010020 134 WRTDREDVHMNIEAALTDIIG---EP-AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVP 209 (520)
Q Consensus 134 ~~~~~~dv~~~ie~~l~e~~g---~~-g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~ 209 (520)
...|||| ++++.|.+.+| +. ++|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|++++||
T Consensus 73 --~~~~dV~-a~~~~l~e~~g~~~~~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~ 149 (450)
T 1re5_A 73 --TAGNSAI-PLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLV 149 (450)
T ss_dssp --HHSSSHH-HHHHHHHHHHHHHCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred --ccCccHH-HHHHHHHHHhCCCCCcccccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeee
Confidence 2479997 77888999998 76 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCccH------HHHHHhcCCCCCCCCcc
Q 010020 210 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR------FMTAEALEFTAPMRNSI 283 (520)
Q Consensus 210 GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~~~r------~~la~~LG~~~~~~n~~ 283 (520)
||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+ ||+.++++ +++++.|||+.+..
T Consensus 150 GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGG-Av-Gt~~~~~~~~~~~~~~la~~LG~~~~~~--- 224 (450)
T 1re5_A 150 GRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGG-AS-GSLAALGSKAMPVAEALAEQLKLTLPEQ--- 224 (450)
T ss_dssp EEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TT-SSCGGGGGGHHHHHHHHHHHHTCBCCSS---
T ss_pred ccccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-hh-cCCcccCcchHHHHHHHHHHhCcCCCCc---
Confidence 999999999999999999999999999999999999999999996 54 99999998 99999999998765
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccC-CCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHH
Q 010020 284 DAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 362 (520)
Q Consensus 284 ~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~-~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~ 362 (520)
+|+++||++++++++++.++++|+|||+||++|+++||||+.+|. +.++|||||||||||+.+|.++++|++++|+..+
T Consensus 225 ~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~ 304 (450)
T 1re5_A 225 PWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLST 304 (450)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeecccccCCCccccCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999885 3789999999999999999999999999999998
Q ss_pred HHHHHccCcccccccccc---ccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcc--cChhHHHHHHHHHHHcCCC
Q 010020 363 LLTLCKGLPLAYNRDLQE---DKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP--AGYLDATTLADYLVNKQVP 437 (520)
Q Consensus 363 ~~~~~~~~p~~~erD~~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~Lv~~G~~ 437 (520)
++ +++|.+||||+++ +|..+++++.++..++..+..+++||+||++||++++. .++++||+++.+|++ |+|
T Consensus 305 ~~---~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~Ae~l~~~L~~-gig 380 (450)
T 1re5_A 305 LF---AAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQ-RLG 380 (450)
T ss_dssp HH---HTCCCCTTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHH-HSC
T ss_pred HH---HhChhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcChhHHHHHHHHHhc-CCC
Confidence 87 3568899999987 67889999999999999999999999999999999995 789999999999999 999
Q ss_pred hhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-hHHHHhccChhHhhhhcccCCCccHHHHHHHHHHHHH
Q 010020 438 FRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-DKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVA 511 (520)
Q Consensus 438 fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~~~~~ 511 (520)
||+||++|++++++|.++|+++.|++.++ +.+.+.+ ++++.+++||+. +.|+++.++++++++...
T Consensus 381 ~~~A~~~v~~~~~~a~~~g~~l~e~~~~~-~~~~~~l~~~~l~~~ldp~~-------~~~~a~~~~~~~~~~~~~ 447 (450)
T 1re5_A 381 RDRAHHLLEQCCQRAVAEQRHLRAVLGDE-PQVSAELSGEELDRLLDPAH-------YLGQARVWVARAVSEHQR 447 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHTC-HHHHHHSCHHHHHHHTCGGG-------CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHhC-hhhccCCCHHHHHHhcCHHH-------HhhhHHHHHHHHHhhccc
Confidence 99999999999999999999999998765 3444445 458889999995 999999999998876543
No 16
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=6.1e-85 Score=696.82 Aligned_cols=426 Identities=21% Similarity=0.195 Sum_probs=371.9
Q ss_pred cccccccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccch-hcc--HHHHHHHHHHHHHHHHHHHHc
Q 010020 29 SLRSSLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESI-SYD--KALYKHDIMGSKAHASMLAKQ 105 (520)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~-~~~--~~l~~~~i~~~~A~a~al~e~ 105 (520)
+.--+.|.|++|+.+||.|+|||+ +|.+.+++|+.+. ++. ..+++++..+++|+|++|+++
T Consensus 20 ~~~~r~e~d~~g~~~vp~~~~yG~----------------qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~ 83 (478)
T 3ocf_A 20 GSMTRREQDSLGERDIPMDAYFGI----------------QTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKL 83 (478)
T ss_dssp ---CEEEEETTEEEEECTTCSSCH----------------HHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccccccCCCccCCcccccCH----------------HHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 344588999999999999998875 7999999998664 343 699999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHHHHhcCCccccc----CCCchhhhHH----HHHHHHhC-CCCCc--cc------CCCCchh
Q 010020 106 GLISDSDKNSILRGLDEIERQIEAGKFMWRT----DREDVHMNIE----AALTDIIG-EPAKK--LH------TARSRND 168 (520)
Q Consensus 106 GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie----~~l~e~~g-~~g~~--lH------~G~S~nD 168 (520)
|+||++.+++|.++|++|..+...++|+++. .++|+|||++ +++.+.+| +.|+| || +|+||||
T Consensus 84 G~l~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmnvnevia~~a~e~~G~~~G~~~~vHpndhVn~g~SsND 163 (478)
T 3ocf_A 84 RQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTND 163 (478)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTTTGGGCCCBTTCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCccccCCCcchhhccCCccccchHHHHHHHHHHHHhchhcCCCCccCCCCCCCCCCChhh
Confidence 9999999999999999999887778898764 3899999987 45678889 67888 99 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 010020 169 QVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMN 248 (520)
Q Consensus 169 i~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~ 248 (520)
+++|+++|++|+++..|.+.|..|+++|.++|++|+|++||||||+|+|||+||||||++|+++|.|+++||.+++++++
T Consensus 164 v~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~ 243 (478)
T 3ocf_A 164 VYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFR 243 (478)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCCCccH-------HHHHHhcCCCC-CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 010020 249 FCPLGACALAGTGLPIDR-------FMTAEALEFTA-PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE- 319 (520)
Q Consensus 249 ~~plGg~a~~Gt~~~~~r-------~~la~~LG~~~-~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~- 319 (520)
.+||||+|+ ||++++++ ++++++|||+. +..|+++++++||+++|++++++.++++|+|||+||++|+|+
T Consensus 244 ~~~lGgtAv-GTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgp 322 (478)
T 3ocf_A 244 EVNLGGTAI-GTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGP 322 (478)
T ss_dssp EECTTC------------CHHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBS
T ss_pred HhCCCCeee-CCCcCCChhHHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999888 99999886 45799999994 688999999999999999999999999999999999999986
Q ss_pred --CcceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCccccccccccccccHHHHHHHHHHHHH
Q 010020 320 --EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLE 397 (520)
Q Consensus 320 --e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~~~~~~~l~~~~~~~~~~l~ 397 (520)
+||||++|+ +++|||||||||||+.+|.++++|++|+|+..++..+.++.+++.+-.......++++++.++..++.
T Consensus 323 r~g~gEi~lp~-~q~GSSiMP~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~~g~leln~~~p~i~~~l~~s~~ll~~~~~ 401 (478)
T 3ocf_A 323 RSGLGEIRLPA-VQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMT 401 (478)
T ss_dssp SSSCCCEECCC-CSCCBTTBTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEECCC-CCCcCCCCCcccCcHHHHHHHHHHHHHHhHHHHHHHHHhcCcchhcccchhHHHHHHHHHHHHHHHHH
Confidence 699999995 79999999999999999999999999999999998777654333221111223468999999999999
Q ss_pred HHHH-HHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCChH
Q 010020 398 VSAE-FAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDK 476 (520)
Q Consensus 398 ~~~~-~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~~~ 476 (520)
.+.. |++||+||++||++++..++.++|+|++++ +|+.+++++++|.++|++++|+.++. ++.++
T Consensus 402 ~~~~~~v~gl~vn~erm~~~l~~s~~lvtaLa~~i---------gy~~a~~ia~~A~~~g~~l~e~~~~~-----~~s~e 467 (478)
T 3ocf_A 402 NLAERCVDGIEANVERCRAGAEESISLATALVPVV---------GYARAAEIAKQALASGQTVMEVAISK-----GLDAS 467 (478)
T ss_dssp HHHHHTGGGCEECHHHHHHHHHTCGGGGGGGHHHH---------HHHHHHHHHHHHHHHCCCHHHHHHHT-----TCCCH
T ss_pred HHHHHhhCCCEECHHHHHHHHHhCccHHHHhhHHH---------HHHHHHHHHHHHHHhCCCHHHHHHHc-----CCCHH
Confidence 9975 899999999999999999999999999998 89999999999999999999998753 22568
Q ss_pred HHHhccChhH
Q 010020 477 DVYEYLGVEN 486 (520)
Q Consensus 477 ~~~~~ldp~~ 486 (520)
++.+++||++
T Consensus 468 el~~~ldp~~ 477 (478)
T 3ocf_A 468 ALTIMLDPLR 477 (478)
T ss_dssp HHHHHTCSCC
T ss_pred HHHHhcCccc
Confidence 8999999974
No 17
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.1e-83 Score=681.46 Aligned_cols=420 Identities=20% Similarity=0.230 Sum_probs=372.9
Q ss_pred ccccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccch---hccHHHHHHHHHHHHHHHHHHHHcCCC
Q 010020 32 SSLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESI---SYDKALYKHDIMGSKAHASMLAKQGLI 108 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~---~~~~~l~~~~i~~~~A~a~al~e~GiI 108 (520)
-+.|.|++|+.+||.|+|||+ +|.+.+++|+.+. +++..++++...+++|+|++|.++| |
T Consensus 30 ~r~e~D~~G~~~vp~~~~~g~----------------qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~~~G-l 92 (490)
T 3e04_A 30 FRIEYDTFGELKVPNDKYYGA----------------QTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYG-L 92 (490)
T ss_dssp EEEEEETTEEEEEETTCCCCH----------------HHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGGGGT-C
T ss_pred CCcccccCcCccCcchhhhhH----------------HHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhhhcC-C
Confidence 489999999999999998876 7999999999775 4678999999999999999999999 9
Q ss_pred CHHhHHHHHHHHHHHHHHHhcCCcccc---cC-CCchhhh----HHHHHHHHhC-CCCCc--cc------CCCCchhHHH
Q 010020 109 SDSDKNSILRGLDEIERQIEAGKFMWR---TD-REDVHMN----IEAALTDIIG-EPAKK--LH------TARSRNDQVL 171 (520)
Q Consensus 109 ~~~~a~~I~~al~~i~~~~~~~~~~~~---~~-~~dv~~~----ie~~l~e~~g-~~g~~--lH------~G~S~nDi~~ 171 (520)
|++.+++|.++|++|..+...++||++ ++ ++++||| |++++.|++| +.|+| || +||||||+++
T Consensus 93 ~~~~a~aI~~a~~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~ 172 (490)
T 3e04_A 93 DPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFP 172 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHH
Confidence 999999999999999998888899854 33 8999998 5678889999 77876 46 4999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 010020 172 TDFRLWCRDAID-TIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFC 250 (520)
Q Consensus 172 Ta~~L~lr~~l~-~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~ 250 (520)
|+++|++++.+. .|.+.|..|+++|.++|++|+|++||||||+|+|||+||||||++|+++|.|+++||.+++++++.+
T Consensus 173 Ta~~l~~~~~~~~~L~~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~ 252 (490)
T 3e04_A 173 TAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYEL 252 (490)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998884 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCccHHH-------HHHhcCCCC-CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q 010020 251 PLGACALAGTGLPIDRFM-------TAEALEFTA-PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE--- 319 (520)
Q Consensus 251 plGg~a~~Gt~~~~~r~~-------la~~LG~~~-~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~--- 319 (520)
||||||+ ||++++++++ +++.|||+. +..|+++++++||+++|++++++.++++|+|||+||++|+|+
T Consensus 253 ~lGgtAv-GTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~ 331 (490)
T 3e04_A 253 AAGGTAV-GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRS 331 (490)
T ss_dssp CTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSS
T ss_pred CCCCccc-cCCCcCChhHHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999998 9999998754 999999996 688999999999999999999999999999999999999985
Q ss_pred CcceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccccccc--ccccHHHHHHHHHHHHH
Q 010020 320 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQE--DKEPTFDSVKTIVGMLE 397 (520)
Q Consensus 320 e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~~~--~~~~l~~~~~~~~~~l~ 397 (520)
+||||++|+ .++||||||||+||+.+|.++++|++++|+.+++..+..+ .++|++... .-.++++++.++..++.
T Consensus 332 g~gEi~lp~-~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~~--g~~eln~~~p~~~~~ll~s~~ll~~~~~ 408 (490)
T 3e04_A 332 GLGELILPE-NEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSN--GHFELNVFKPMMIKNVLHSARLLGDASV 408 (490)
T ss_dssp SCCCEECCC-CSCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CBTTBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEECCC-CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 599999995 6999999999999999999999999999999888655532 344444311 11457888888888888
Q ss_pred HHH-HHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-h
Q 010020 398 VSA-EFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-D 475 (520)
Q Consensus 398 ~~~-~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~ 475 (520)
.+. .|++||+||++||++++.+++.++|+|++++ +|+.+++++++|.++|++++|+.++. +++ +
T Consensus 409 ~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~i---------Gy~~a~~iak~A~~~g~~l~e~~~~~-----~~ls~ 474 (490)
T 3e04_A 409 SFTENCVVGIQANTERINKLMNESLMLVTALNPHI---------GYDKAAKIAKTAHKNGSTLKETAIEL-----GYLTA 474 (490)
T ss_dssp HHHHHTGGGCEECHHHHHHHHHHCSGGGGGGHHHH---------CHHHHHHHHHHHHHHTCCHHHHHHHH-----TSCCH
T ss_pred HHHHHHHccCEECHHHHHHHHhhchHHHHHhhhHH---------HHHHHHHHHHHHHHHCCCHHHHHHHc-----CCCCH
Confidence 886 6999999999999999999999999999998 89999999999999999999998753 334 6
Q ss_pred HHHHhccChhH
Q 010020 476 KDVYEYLGVEN 486 (520)
Q Consensus 476 ~~~~~~ldp~~ 486 (520)
+++.+++||+.
T Consensus 475 eeld~~ldP~~ 485 (490)
T 3e04_A 475 EQFDEWVKPKD 485 (490)
T ss_dssp HHHHHHCCGGG
T ss_pred HHHHHHcCHHH
Confidence 78999999996
No 18
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=2e-82 Score=675.80 Aligned_cols=421 Identities=19% Similarity=0.206 Sum_probs=376.8
Q ss_pred ccccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccch-hccHHHHHHHHHHHHHHHHHHHHcCCCCH
Q 010020 32 SSLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESI-SYDKALYKHDIMGSKAHASMLAKQGLISD 110 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~~A~a~al~e~GiI~~ 110 (520)
-+.|.|++|+.+||.|+|||+ +|.+.+++|+.+. +++..++++...+++|+|.+|.++|+||+
T Consensus 25 ~r~e~d~~g~~~vp~~~~~g~----------------qt~Ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~~G~l~~ 88 (482)
T 3gtd_A 25 YRIESDSFGEIQIEEKFYWGA----------------QTQRSLNNFKISKQKMPKILIRALAILKKCAAQVNYEFGDLEY 88 (482)
T ss_dssp EEEEEETTEEEEEETTCCCCH----------------HHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred CcCccccCCCccCCcccccCH----------------HHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 478999999999999998875 7999999999774 67899999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhcCCccccc---C-CCchhhhH----HHHHHHHhC-CCCCc--cc------CCCCchhHHHHH
Q 010020 111 SDKNSILRGLDEIERQIEAGKFMWRT---D-REDVHMNI----EAALTDIIG-EPAKK--LH------TARSRNDQVLTD 173 (520)
Q Consensus 111 ~~a~~I~~al~~i~~~~~~~~~~~~~---~-~~dv~~~i----e~~l~e~~g-~~g~~--lH------~G~S~nDi~~Ta 173 (520)
+.+++|.++|++|..+...++||++. + ++++|||+ ++++.+++| +.|+| +| +||||||+++|+
T Consensus 89 ~~a~aI~~a~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta 168 (482)
T 3gtd_A 89 KIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTA 168 (482)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHH
Confidence 99999999999999988888998653 3 88999985 567788898 77765 35 599999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 010020 174 FRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL 252 (520)
Q Consensus 174 ~~L~lr~~l-~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~pl 252 (520)
++|++++.+ +.|.+.|..|+++|.++|++|+|++||||||+|+||||||||||++|++.|.|+++||.+++++++.+||
T Consensus 169 ~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~l 248 (482)
T 3gtd_A 169 MHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQ 248 (482)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999988 4799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCccHH-------HHHHhcCCCC-CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---Cc
Q 010020 253 GACALAGTGLPIDRF-------MTAEALEFTA-PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE---EF 321 (520)
Q Consensus 253 Gg~a~~Gt~~~~~r~-------~la~~LG~~~-~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~---e~ 321 (520)
||+|+ ||+++++++ ++++.|||+. +..|+++++++||+++|++++++.++++|+|||+||++|+|+ +|
T Consensus 249 GgtAv-GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~ 327 (482)
T 3gtd_A 249 GGTAV-GTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGL 327 (482)
T ss_dssp TCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSC
T ss_pred CCccc-cCCCcCCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCe
Confidence 99987 999999875 5999999996 678999999999999999999999999999999999999985 69
Q ss_pred ceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcccccccccc--ccccHHHHHHHHHHHHHHH
Q 010020 322 GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQE--DKEPTFDSVKTIVGMLEVS 399 (520)
Q Consensus 322 gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~~~--~~~~l~~~~~~~~~~l~~~ 399 (520)
|||++|+ .++|||||||||||+.+|.++++|++++|+..++..+... ..+|++... ...++++++.++..++..+
T Consensus 328 gEi~lp~-~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~--g~~eln~~~pl~~~~~l~s~~ll~~~~~~~ 404 (482)
T 3gtd_A 328 GELHLPE-NEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSN--GHLELNVFKPVIIYNILQSIELLSDSVNSF 404 (482)
T ss_dssp CCEECCC-CSCCCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTC--CBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCC-CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 6999999999999999999999999999999888765542 356666421 1135677777777777777
Q ss_pred H-HHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-hHH
Q 010020 400 A-EFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-DKD 477 (520)
Q Consensus 400 ~-~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~~~ 477 (520)
. .|++||+||++||++++.+++.++|+|++++ +|+.+++++++|.++|++++|++++. +++ +++
T Consensus 405 ~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~i---------Gy~~a~~ia~~A~~~g~~l~e~~~~~-----~~ls~ee 470 (482)
T 3gtd_A 405 VTHCVKGLEPNIARINTLRDKSLMLVTVLNPHI---------GYDNAAKIAKEAHKYGITLKEAAKKL-----NFLSEEE 470 (482)
T ss_dssp HHHTTTTCEECHHHHHHHHHHCGGGHHHHHHHH---------CHHHHHHHHHHHHHHTCCHHHHHHHT-----TSCCHHH
T ss_pred HHHHHccCEECHHHHHHHHhhhhHHHHHhhhHH---------HHHHHHHHHHHHHHhCCCHHHHHHHc-----CCCCHHH
Confidence 6 6999999999999999999999999999988 79999999999999999999998752 334 678
Q ss_pred HHhccChhH
Q 010020 478 VYEYLGVEN 486 (520)
Q Consensus 478 ~~~~ldp~~ 486 (520)
+.+++||+.
T Consensus 471 ld~~ldP~~ 479 (482)
T 3gtd_A 471 FDKIVVPEK 479 (482)
T ss_dssp HHHHHSCC-
T ss_pred HHHHcCHHH
Confidence 999999996
No 19
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=1.1e-82 Score=670.87 Aligned_cols=377 Identities=20% Similarity=0.213 Sum_probs=333.5
Q ss_pred ccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHH---HHHHHHHHhcCCcccccCC
Q 010020 62 WGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG---LDEIERQIEAGKFMWRTDR 138 (520)
Q Consensus 62 ~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~a---l~~i~~~~~~~~~~~~~~~ 138 (520)
|++||.. .++...|++ +.++++++.+++|||++|.++|+||++.+++|.++ ++.+..+. ....
T Consensus 6 ~~~ry~~--~~~~~i~sd-----~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~d~~~~~~~~-------~~~~ 71 (403)
T 1dof_A 6 FDWRYGS--EEIRRLFTN-----EAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRLE-------RETG 71 (403)
T ss_dssp GGTTSSC--HHHHTTSSH-----HHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC---------------
T ss_pred cccccCc--HHHHHHcCh-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHh-------hccC
Confidence 7889974 678888874 57888999999999999999999999999999988 22222221 1137
Q ss_pred CchhhhHHHHHHHHhCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCcc
Q 010020 139 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218 (520)
Q Consensus 139 ~dv~~~ie~~l~e~~g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~ 218 (520)
||| +++++.|.+.+| |+|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|+|++||||||+||||
T Consensus 72 ~dV-ia~~~~l~e~~G--g~~vH~g~SsnD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~ 148 (403)
T 1dof_A 72 HDI-LSLVLLLEQKSG--CRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAE 148 (403)
T ss_dssp CHH-HHHHHHHHHHHC--CSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEE
T ss_pred CcH-HHHHHHHHHHcC--CCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCcccc
Confidence 888 788999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCC------CccHHHHHHhcCCCCCCCCcccccc-chHH
Q 010020 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL------PIDRFMTAEALEFTAPMRNSIDAVS-DRDF 291 (520)
Q Consensus 219 P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~------~~~r~~la~~LG~~~~~~n~~~~~~-~rd~ 291 (520)
||||||||++|+++|.|| +||.+++++++.+||||++ ||+. +.+++++++.|||+.+.. +|+. +||+
T Consensus 149 P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGgAv--Gt~~~~~~~~~~~~~~~a~~lGl~~~~~---~~~~~~rD~ 222 (403)
T 1dof_A 149 PITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGGAV--GTMASWGELGLEVRRRVAERLGLPHHVI---TTQVAPRES 222 (403)
T ss_dssp EEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCCTT--SSCGGGGGGHHHHHHHHHHHTTCCBCSS---CSSSCCHHH
T ss_pred cCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccHHH--hhCcccccccHHHHHHHHHHhCcCCCCC---cchhhccHH
Confidence 999999999999999999 9999999999999999855 6655 558999999999997654 5788 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCc
Q 010020 292 VLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLP 371 (520)
Q Consensus 292 ~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p 371 (520)
++|++++++.++++|+|||+||++|+++|||||++| . +|||||||||||+.+|.++++|++++|+..+++. ++|
T Consensus 223 ~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~ei~lp--~-~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~ 296 (403)
T 1dof_A 223 FAVLASALALMAAVFERLAVEIRELSRPEIGEVVEG--G-GGSSAMPHKANPTASERIVSLARYVRALTHVAFE---NVA 296 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEESC--C----------CCCHHHHHHHHHHHHHHHHHHHHHH---TTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccCeEeCC--C-CccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH---cCc
Confidence 999999999999999999999999999999999999 4 9999999999999999999999999999998864 568
Q ss_pred cccccccccc---cccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcc--cChhHHHHHHHHHHHcCCChhhHHHHHH
Q 010020 372 LAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP--AGYLDATTLADYLVNKQVPFRTSHDIVG 446 (520)
Q Consensus 372 ~~~erD~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~Lv~~G~~fr~Ah~~v~ 446 (520)
.+||||+++. |..+|+++.++..++..+..+++||+||++||++++. .++++||+++.+|+++|+|||+||++|+
T Consensus 297 ~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~~l~~~L~~~gig~~~A~~iv~ 376 (403)
T 1dof_A 297 LWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAK 376 (403)
T ss_dssp CCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999999874 6789999999999999999999999999999999995 7888999999999999999999999999
Q ss_pred HHHHHHHHcCC-ChhHhhHHHH
Q 010020 447 KAVALCVSKEC-QLQDLSLDEM 467 (520)
Q Consensus 447 ~~v~~a~~~g~-~l~el~~~~~ 467 (520)
+++++|.++|+ +++|++++++
T Consensus 377 ~~~~~a~~~g~~~l~e~~~~~~ 398 (403)
T 1dof_A 377 EVKALTFEYQKWPVERLIEDAL 398 (403)
T ss_dssp TCCCCCCGGGGCCHHHHHHHHH
T ss_pred HHHHHHHHhCCcCHHHHHHHHh
Confidence 99999999998 9999988754
No 20
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.1e-81 Score=673.51 Aligned_cols=428 Identities=18% Similarity=0.174 Sum_probs=368.0
Q ss_pred ccccccccccCCccccchhccccCCcccccccCCCcccHHHHHHhcccch-hccHHHHHHHHHHHHHHHHHHHHcCCCCH
Q 010020 32 SSLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESI-SYDKALYKHDIMGSKAHASMLAKQGLISD 110 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~~A~a~al~e~GiI~~ 110 (520)
-+.|.|++|+.+||.|+|||+ +|.+.+++|+.+. +++..+++++..+++|+|++|.++|+||+
T Consensus 36 ~r~e~d~~g~~~vp~~~~~g~----------------qt~ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~lG~l~~ 99 (495)
T 4hgv_A 36 TRTETDTFGPIEVASDRYWGA----------------QAQRSLGNFKIGWEKQPLAIVRALGIVKQAAARANMALGRLDP 99 (495)
T ss_dssp EEEEEETTEEEEEETTCCCCH----------------HHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred CeeeecCCCCccCCCccchHH----------------HHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 488999999999999988875 8999999999764 78899999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhcCCccccc----CCCchhhhHHH----HHHHHhC-CCC--------CcccCCCCchhHHHHH
Q 010020 111 SDKNSILRGLDEIERQIEAGKFMWRT----DREDVHMNIEA----ALTDIIG-EPA--------KKLHTARSRNDQVLTD 173 (520)
Q Consensus 111 ~~a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~----~l~e~~g-~~g--------~~lH~G~S~nDi~~Ta 173 (520)
+.+++|.++|++|..+...++||++. .++..|||++. +..+.+| +.| .+||+|+||||+++|+
T Consensus 100 ~~a~aI~~A~~ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA 179 (495)
T 4hgv_A 100 AIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTA 179 (495)
T ss_dssp HHHHHHHHHHHHHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhhccchhhhhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHH
Confidence 99999999999999998889999753 38889999865 4456676 444 3599999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 010020 174 FRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL 252 (520)
Q Consensus 174 ~~L~lr~~l-~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~pl 252 (520)
++|++++.+ +.|.+.|..|+++|.++|++|++++|+||||+|||+||||||||++|+++|.|+++||.+++++++.+++
T Consensus 180 ~~l~~~~~~~~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~l 259 (495)
T 4hgv_A 180 MHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQ 259 (495)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999877 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCC--CccH-----HHHHHhcCCC-CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---c
Q 010020 253 GACALAGTGL--PIDR-----FMTAEALEFT-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---F 321 (520)
Q Consensus 253 Gg~a~~Gt~~--~~~r-----~~la~~LG~~-~~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e---~ 321 (520)
||+|+ ||+. +.+. +++++.+||. .+..|+++|+++||++++++++++.++++|+|||+||++|+|+| |
T Consensus 260 GgtAv-Gtg~~~~~~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~ 338 (495)
T 4hgv_A 260 GGTAV-GTGLNAPVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGL 338 (495)
T ss_dssp TCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSC
T ss_pred Ccchh-hhcccCchhHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceee
Confidence 99886 5554 4443 4578888888 45778999999999999999999999999999999999999976 5
Q ss_pred ceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCccccccccccccccHHHHHHHHHHHHHHH-H
Q 010020 322 GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVS-A 400 (520)
Q Consensus 322 gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~erD~~~~~~~l~~~~~~~~~~l~~~-~ 400 (520)
+|+.+| ++++||||||||+||+.+|.++++|++++|+..++..+..+.+++++.+.+....++++++..+..++..+ .
T Consensus 339 ~Ei~~p-~~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~ 417 (495)
T 4hgv_A 339 GELSLP-ENEPGSSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTD 417 (495)
T ss_dssp CCEECC-CCSCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEecC-cCCcccccCccccChHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666 57999999999999999999999999999999998888876555665555665566777676666655555 5
Q ss_pred HHHhhcccCHHHHHHhcccChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCC-hHHHH
Q 010020 401 EFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF-DKDVY 479 (520)
Q Consensus 401 ~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~-~~~~~ 479 (520)
.|++||+||++||++++.+++.++|+|++++ +|+.+.+++++|.++|++++|+..+. +.+ ++++.
T Consensus 418 ~~i~gl~vn~erm~~~l~~s~~lvtaL~~~i---------Gy~~A~~iak~A~~~g~~lre~~~~~-----~~ls~eeld 483 (495)
T 4hgv_A 418 NCVVGIEAREDNIKAALDRSLMLVTALAPKI---------GYDNAAKIAKTAHKNGTTLREEAVGG-----GYVTDEEFD 483 (495)
T ss_dssp HTGGGCEECHHHHHHHHHHCSGGGGGTHHHH---------CHHHHHHHHHHHHHHTCCHHHHHHTT-----TSSCHHHHH
T ss_pred HHhccCEECHHHHHHHHhcChhHHHHhhHHH---------HHHHHHHHHHHHHHhCCCHHHHHHHc-----CCCCHHHHH
Confidence 7999999999999999999998888888776 67777888888999999999986542 334 67899
Q ss_pred hccChhHhhhhcccCCCcc
Q 010020 480 EYLGVENAIRKFSSFGSTG 498 (520)
Q Consensus 480 ~~ldp~~~v~~r~~~gG~a 498 (520)
+++||+. |.|||
T Consensus 484 ~lldP~~-------~~gpA 495 (495)
T 4hgv_A 484 AVVRPET-------MIGPA 495 (495)
T ss_dssp HHCCGGG-------SSSCC
T ss_pred HhCCHHH-------hcCCC
Confidence 9999996 88875
No 21
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.2e-80 Score=663.43 Aligned_cols=432 Identities=16% Similarity=0.166 Sum_probs=336.6
Q ss_pred cccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCC--CCHHhHHHHHHHHHHHHHHHhcCCcccccCC
Q 010020 61 LWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGL--ISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138 (520)
Q Consensus 61 ~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~Gi--I~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 138 (520)
.|.+||+.+ .++...|++..++. ..+++++|++++++++|+ ||++++++|.++++++..+...+ +. ...+
T Consensus 10 pl~~ry~~~-~~m~~~fs~~~~~~-----~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~~~-~e-~~~~ 81 (478)
T 1yis_A 10 VLSTRYCKN-SPLVSILSETNKAT-----LWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRS-EE-RKLK 81 (478)
T ss_dssp HHHHTTTTT-CTHHHHTSHHHHHH-----HHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHHHH-HH-HHSS
T ss_pred CcccccCCh-HHHHHHcCchHHHH-----HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHHhh-HH-HhcC
Confidence 466788743 33899999876444 566788999999999999 99999999999876554332111 11 2458
Q ss_pred CchhhhHHHHHHHHhCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCcc
Q 010020 139 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218 (520)
Q Consensus 139 ~dv~~~ie~~l~e~~g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~ 218 (520)
||||.+++ .|.+.+|+.|+|||+|+||||+.+|+..|++|+++..|.+.|..|+++|.++|++|+|++||||||+||||
T Consensus 82 ~DV~a~v~-~l~e~~g~~~~~iH~G~TS~Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~ 160 (478)
T 1yis_A 82 HDVMAHNH-AFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTAS 160 (478)
T ss_dssp CHHHHHHH-HHHHHCTTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEE
T ss_pred CcHHHHHH-HHHHhhhhchhheeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccce
Confidence 99988877 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCC------CCccH-------HHHHHhcCCCCCCCCcccc
Q 010020 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTG------LPIDR-------FMTAEALEFTAPMRNSIDA 285 (520)
Q Consensus 219 P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~------~~~~r-------~~la~~LG~~~~~~n~~~~ 285 (520)
||||||||++|+++|.||++||.+++++++..++||+ +||+ ||+|+ +++++.|||+.+..|+. |
T Consensus 161 P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg~--~GT~a~~~~~f~~d~~~~~~v~~~~a~~LG~~~~~~~s~-~ 237 (478)
T 1yis_A 161 LVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGA--TGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITG-Q 237 (478)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCTT--TSSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSSCS-S
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hccchhhhcccCcchhhHHHHHHHHHHHhCcCCCCCccc-c
Confidence 9999999999999999999999999999988888765 3998 88888 88999999997766764 8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccC-CCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHH
Q 010020 286 VSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 364 (520)
Q Consensus 286 ~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~-~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~ 364 (520)
+++||+++|++++++.++++|+|||+||++|+| +||+++|. .+++|||||||||||+.+|.++++|++++|++++++
T Consensus 238 ~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s--~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~ 315 (478)
T 1yis_A 238 TYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQA--FGELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEAL 315 (478)
T ss_dssp SCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSEECC-------------CCCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhheeccccCCCCccccCCcccCCHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999 99999984 468999999999999999999999999999999888
Q ss_pred HHHccCcccccccccc---ccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhccc--ChhHHHHHHHHHHHcCCChh
Q 010020 365 TLCKGLPLAYNRDLQE---DKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFR 439 (520)
Q Consensus 365 ~~~~~~p~~~erD~~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~--~~~~at~la~~Lv~~G~~fr 439 (520)
..+++ .++|||+.. .+..+++++..+..++..+..|++||+||+++|++++.. +++.++.++++|+++|+|||
T Consensus 316 ~~~~~--~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~~~~~~~te~v~~~l~~~G~~~~ 393 (478)
T 1yis_A 316 TILAD--QGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQ 393 (478)
T ss_dssp HHHHT--CCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHhcc--CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhCCChHHHHHHHHHHHHcCCCHH
Confidence 77775 468888754 335788999999999999999999999999999999976 45545668999999999999
Q ss_pred hHHHHHHHHHHHHH----HcCCChhHhhHHHHhhcCCCChHHHHhcc-ChhHhhhhcccCCCccHHHHHHHH-HHHHHHh
Q 010020 440 TSHDIVGKAVALCV----SKECQLQDLSLDEMRSLNPVFDKDVYEYL-GVENAIRKFSSFGSTGSACVTEQL-HSWVAKL 513 (520)
Q Consensus 440 ~Ah~~v~~~v~~a~----~~g~~l~el~~~~~~~~~~~~~~~~~~~l-dp~~~v~~r~~~gG~a~~~v~~~l-~~~~~~l 513 (520)
+||++|++++.++. ++|+++.++..+ +.+. ..++++.+++ ||+. |+|++|++|++++ ..++..+
T Consensus 394 ~Ah~~v~~~a~~~~~~v~~~g~~~~~l~~~--~~~~-l~~~el~~~l~dp~~-------~~g~a~~~v~~~~~~~~~~~l 463 (478)
T 1yis_A 394 QAHAVIRKTALEAKQLQATQKVDIRQTMAD--PFFD-SVRDRVVGLVNNPIN-------FTGRCVSQTESFIAKELKPTI 463 (478)
T ss_dssp -------------------------CCCTT--TTST-TTHHHHHHHHHCGGG-------GSTTHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHhcC--CCCC-CCHHHHHHHHhCHHH-------HcCcHHHHHHHHHHHHHHHHH
Confidence 99999999887663 567765444321 1111 2267899999 9995 9999999999999 5788888
Q ss_pred hhhcc
Q 010020 514 GINRS 518 (520)
Q Consensus 514 ~~~~~ 518 (520)
++++.
T Consensus 464 ~~~~~ 468 (478)
T 1yis_A 464 DKYLD 468 (478)
T ss_dssp GGGCC
T ss_pred HHHHH
Confidence 87653
No 22
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=1.2e-78 Score=655.57 Aligned_cols=429 Identities=17% Similarity=0.178 Sum_probs=357.8
Q ss_pred cccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCC-CCHHhHHHHHHHHHHHHHHHhcCCcccccCCC
Q 010020 61 LWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGL-ISDSDKNSILRGLDEIERQIEAGKFMWRTDRE 139 (520)
Q Consensus 61 ~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~Gi-I~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 139 (520)
.+.+||+. .++...|++..++. ..+++++|+|++++++|+ ||++++++|.++++++..+...+ +. ...+|
T Consensus 38 pl~~ry~~--~~m~~~fS~~~~~~-----~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~~~-~e-~~~~h 108 (503)
T 2j91_A 38 PLASRYAS--PEMCFVFSDRYKFR-----TWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAE-EE-KRLRH 108 (503)
T ss_dssp HHHHTTSC--HHHHHHTSHHHHHH-----HHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHHHH-HH-HHHSC
T ss_pred CcccccCC--HHHHHHhChhHHHH-----HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHHhh-hh-hhcCC
Confidence 46778963 58999999876444 566778999999999999 99999999998875543221111 11 23589
Q ss_pred chhhhHHHHHHHHhCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCccc
Q 010020 140 DVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQP 219 (520)
Q Consensus 140 dv~~~ie~~l~e~~g~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~A~P 219 (520)
|||..++ .+.+.+|+.|+|||+|+||||+.+|+..|++|+++..|.+.|..|+++|.++|++|+++|||||||+|||||
T Consensus 109 DV~a~v~-~l~e~~g~~~~~iH~G~TS~Di~dta~~L~lr~al~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P 187 (503)
T 2j91_A 109 DVMAHVH-TFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQL 187 (503)
T ss_dssp HHHHHHH-HHHHHCTTTGGGTTTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEE
T ss_pred cHHHHHH-HHHHHhccccccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcccee
Confidence 9988776 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCC------CCccH-------HHHHHhcCCCCCCCCccccc
Q 010020 220 VLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTG------LPIDR-------FMTAEALEFTAPMRNSIDAV 286 (520)
Q Consensus 220 ~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~------~~~~r-------~~la~~LG~~~~~~n~~~~~ 286 (520)
|||||||++|+++|.|+++||.+++++++.+++||+ + ||+ ||+|+ +++++.|||+.+..|+ .|+
T Consensus 188 ~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG~-~-GT~a~~~~~f~~D~~~~~~v~~~~a~~LGl~~~~~~s-~~~ 264 (503)
T 2j91_A 188 TTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGT-T-GTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIIT-GQT 264 (503)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCCT-T-SSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSCC-SSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-c-cchhhhccccCCchHHHHHHHHHHHHHhCCCCCCCcc-ccc
Confidence 999999999999999999999999999988888755 3 888 88887 8899999999766666 489
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccC-CCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHH
Q 010020 287 SDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLT 365 (520)
Q Consensus 287 ~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~-~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~ 365 (520)
++||+++|++++++.++++|+|||+||++|+| +|||++|. .+++|||||||||||+.+|.++++|++++|++++++.
T Consensus 265 ~~rd~~~e~~~~la~la~~L~kia~Dirll~s--~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~ 342 (503)
T 2j91_A 265 YTRKVDIEVLSVLASLGASVHKICTDIRLLAN--LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQ 342 (503)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSEECCC-----------CCCCCHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cceeeccccCCCCCCCCCccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999985 4589999999999999999999999999999998877
Q ss_pred HHccCcccccccccc---ccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhccc--ChhHHHHHHHHHHHcCCChhh
Q 010020 366 LCKGLPLAYNRDLQE---DKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRT 440 (520)
Q Consensus 366 ~~~~~p~~~erD~~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~--~~~~at~la~~Lv~~G~~fr~ 440 (520)
.+++ .++|||+.. .+..+++++..+..++..+..|++||+||+++|++++.. +++.++.++++|+++|+||++
T Consensus 343 ~~~~--~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~erm~~~l~~s~~~~ate~v~~~lv~~G~~~~~ 420 (503)
T 2j91_A 343 TASV--QWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQD 420 (503)
T ss_dssp HHHT--CCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHHHHHHHHSHHHHHHHHC--CCCHHH
T ss_pred HHcc--CcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHCCCCHHH
Confidence 7764 478999754 345788999999999999999999999999999999975 555456789999999999999
Q ss_pred HHHHHHHHHHHHHH----c--CCChhHhhHHHHhhcCCCC---hHHHHhccChhHhhhhcccCCCccHHHHHHHHH-HHH
Q 010020 441 SHDIVGKAVALCVS----K--ECQLQDLSLDEMRSLNPVF---DKDVYEYLGVENAIRKFSSFGSTGSACVTEQLH-SWV 510 (520)
Q Consensus 441 Ah~~v~~~v~~a~~----~--g~~l~el~~~~~~~~~~~~---~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~-~~~ 510 (520)
||++|++.++++-+ . +.++.+.+. ..+.+ ++++.+++||+. |+|+++++|+++++ .++
T Consensus 421 Ah~~v~~~a~~~g~~V~~~~~~~~l~e~l~-----~~~~~~l~~eel~~~ldp~~-------~~g~a~~~v~~~l~~~~~ 488 (503)
T 2j91_A 421 CHEKIRVLSQQAASVVKQEGGDNDLIERIQ-----VDAYFSPIHSQLDHLLDPSS-------FTGRASQQVQRFLEEEVY 488 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCHHHHHH-----HCGGGHHHHTTHHHHTCGGG-------GSTTHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHhcccHHHHHh-----cCcccCCCHHHHHHhcCHHH-------hCCcHHHHHHHHHHHHHH
Confidence 99999888876533 2 235555433 22322 457889999995 99999999999996 789
Q ss_pred HHhhhhcc
Q 010020 511 AKLGINRS 518 (520)
Q Consensus 511 ~~l~~~~~ 518 (520)
..++++++
T Consensus 489 ~~l~~~~~ 496 (503)
T 2j91_A 489 PLLKPYES 496 (503)
T ss_dssp HHHGGGCC
T ss_pred HHHHHHHH
Confidence 88887654
No 23
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=5.8e-79 Score=653.47 Aligned_cols=420 Identities=14% Similarity=0.159 Sum_probs=349.2
Q ss_pred ccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHc-CCCCHHhHHHHHHHHHHHHHHHhcCCcc----c
Q 010020 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQ-GLISDSDKNSILRGLDEIERQIEAGKFM----W 134 (520)
Q Consensus 60 ~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~-GiI~~~~a~~I~~al~~i~~~~~~~~~~----~ 134 (520)
.+|++||+.+++++...|+ |+.++++++.+++||++||+++ |+||++.+++|.+ +.++..++..+.+. +
T Consensus 9 s~~~gRy~~~~~~~~~~~s-----d~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~-l~~~~~~~~~~d~~~i~~~ 82 (465)
T 2qga_B 9 SPIDGRYKKACGELSAFFS-----EHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEV-LNQIATNITDSDIARVKAI 82 (465)
T ss_dssp STTTTTTHHHHGGGGGTSS-----HHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHH-HHHHHHCCCHHHHHHHHHH
T ss_pred CcccccccCCcHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHHH
Confidence 4699999877678888886 4678899999999999999999 9999999999874 44333222111111 1
Q ss_pred -ccCCCchhhhHHHHHHHHhC--------CCCCcccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Q 010020 135 -RTDREDVHMNIEAALTDIIG--------EPAKKLHTARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKNE 204 (520)
Q Consensus 135 -~~~~~dv~~~ie~~l~e~~g--------~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~-~l~~~L~~l~~~L~~lA~~~~ 204 (520)
...+||| +++|+.|.+.+| +.|+|||+|+|||||++|+++|++|+++. .|.+.|..|+++|.++|++|+
T Consensus 83 e~~~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~ 161 (465)
T 2qga_B 83 EEETNHDV-KAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYS 161 (465)
T ss_dssp HHHHSCHH-HHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccCCCh-HHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1248999 999999999998 56899999999999999999999999999 799999999999999999999
Q ss_pred CccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCC------CCC------ccHHHHHHh
Q 010020 205 GLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGT------GLP------IDRFMTAEA 272 (520)
Q Consensus 205 ~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt------~~~------~~r~~la~~ 272 (520)
+||||||||+||||||||||||++|+++|.|+++||.+++ .+++||||+ || .+| +++..+++.
T Consensus 162 ~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAv-GT~~a~~~~~p~~d~~~~~~~~~~~~ 236 (465)
T 2qga_B 162 HVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVK----VCAKFNGAV-GNFNAHKVASKDTDWVNTIGLFLKKH 236 (465)
T ss_dssp TCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSC----CEECCCCTT-SSCHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH----Hhccccchh-cCccccccccCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 567777887 88 345 667677778
Q ss_pred cCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccCCCCCCCCCCCCCCCchhHHHhhhh
Q 010020 273 LEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGK 352 (520)
Q Consensus 273 LG~~~~~~n~~~~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~ 352 (520)
|||+.+.. + +++.+||+++|++++++.++++|+|||+||++|+|+++. .+.++++++|||||||||||+.+|.++++
T Consensus 237 LGl~~~~~-~-~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~-~e~~~~~~~GSSiMP~K~NP~~~e~~~g~ 313 (465)
T 2qga_B 237 FNLTYSIY-C-TQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLL-KLKVKEKEVGSSTMPHKVNPIDFENAEGN 313 (465)
T ss_dssp HCCEECCC-C-SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE-EEC-------CCSCTTCCCCHHHHHHHHH
T ss_pred hCCCCCCC-c-cchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce-eeeCCCCCCCCCCCCCCCChHHHHHHHHH
Confidence 99996643 2 789999999999999999999999999999999999873 34456789999999999999999999999
Q ss_pred HhhhhccHHHHHHHHccCccccccccccc--cccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcccChhH-HHHHHH
Q 010020 353 SARVIGDLVTLLTLCKGLPLAYNRDLQED--KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLD-ATTLAD 429 (520)
Q Consensus 353 a~~v~g~~~~~~~~~~~~p~~~erD~~~~--~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~-at~la~ 429 (520)
++.+.|....++..+ .+++||||++++ +..+++++..+..++..+..+++||+||+++|++++..++.+ +++++.
T Consensus 314 ~~~~~~~~~~~~~~l--~~~~~erdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~~ae~v~~ 391 (465)
T 2qga_B 314 LHIANAFFKLFSSKL--PTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQI 391 (465)
T ss_dssp HHHHHHHHHHHHHHT--TCCSTTBCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhh--cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCChHHHHHHH
Confidence 999999998887766 368999999886 456899999999999999999999999999999999877655 789999
Q ss_pred HHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhh-cCCCChHHHHhccChhHhhhhcccCCCccHHHHHHHHH
Q 010020 430 YLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRS-LNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLH 507 (520)
Q Consensus 430 ~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~-~~~~~~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~l~ 507 (520)
+|+++|+ ++||++|+++++.+..++.++.++..+. +. +...+.+++. ++||+. |.|+++++|+++++
T Consensus 392 ~L~~~G~--~~A~~iv~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~-~ldp~~-------y~G~a~~~v~~~~~ 459 (465)
T 2qga_B 392 VMKRHNY--VDAYEELKQFTRGKVIDQKIMQEFIKTK-CAFLPQDVVDQLL-ELTPAT-------YTGYADYLAKNVER 459 (465)
T ss_dssp HHHHTTC--SCHHHHHHHHHTTSCCCHHHHHHHHHHH-STTSCHHHHHHHH-HCCGGG-------CCTTHHHHHHTHHH
T ss_pred HHHHhCh--HHHHHHHHHHHhhhhhccCCHHHHHHhc-hhcCCcchHHHHH-hcCHHH-------hCCcHHHHHHHHHH
Confidence 9998865 8999999999873333444456665443 21 2111235777 999995 99999999999873
No 24
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=1e-76 Score=635.61 Aligned_cols=411 Identities=16% Similarity=0.153 Sum_probs=352.2
Q ss_pred ccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHc-CC--CC---HHhHHHHHHHHHHHHHHHhcCCcc
Q 010020 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQ-GL--IS---DSDKNSILRGLDEIERQIEAGKFM 133 (520)
Q Consensus 60 ~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~-Gi--I~---~~~a~~I~~al~~i~~~~~~~~~~ 133 (520)
.+|++||+.+++++...|+ |+.++++++.+++||+++|+++ |+ || ++++++|.++|+++..+ .+.
T Consensus 10 s~~~gRy~~~~~~~~~~fs-----d~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g----~~~ 80 (462)
T 2ptr_A 10 SPVDGRYGDKVSALRGIFS-----EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEE----DAA 80 (462)
T ss_dssp STTTTTTGGGSGGGGGTTS-----HHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHH----HHH
T ss_pred CcccccccCchHHHHHHCC-----cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccC----CHH
Confidence 3599999987789999999 5689999999999999999999 66 34 89999999999876432 111
Q ss_pred c-----ccCCCchhhhHHHHHHHHhCC------CCCcccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 010020 134 W-----RTDREDVHMNIEAALTDIIGE------PAKKLHTARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLAL 201 (520)
Q Consensus 134 ~-----~~~~~dv~~~ie~~l~e~~g~------~g~~lH~G~S~nDi~~Ta~~L~lr~~l~-~l~~~L~~l~~~L~~lA~ 201 (520)
. ...+||+ ++++..+.+.+|+ .++|||+|+||||+++|+++|++|+++. .|.+.|..|+++|.++|+
T Consensus 81 ~~~~~~~~~~~dv-~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~ 159 (462)
T 2ptr_A 81 RIKTIERTTNHDV-KAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAV 159 (462)
T ss_dssp HHHHHHHHHSCHH-HHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccCCCH-HHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2238999 9999999999984 5799999999999999999999999999 599999999999999999
Q ss_pred HcCCccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCC------CC------ccHHHH
Q 010020 202 KNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTG------LP------IDRFMT 269 (520)
Q Consensus 202 ~~~~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~------~~------~~r~~l 269 (520)
+|++++||||||+||||||||||||++|+++|.|+++||.+++ ..+++|| ++ ||+ ++ +++ .+
T Consensus 160 ~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~---~~~~~~G-Av-GT~~~~~~~~~~~~~~~v~~-~~ 233 (462)
T 2ptr_A 160 QYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVE---ILGKING-AV-GNYNAHIAAYPEVDWHQFSE-EF 233 (462)
T ss_dssp HTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---CEECCCC-TT-SSCHHHHHHCTTSCHHHHHH-HH
T ss_pred HccCCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHH---HHhccCc-hh-cchhhcccccCcccHHHHHH-HH
Confidence 9999999999999999999999999999999999999999988 4677776 54 664 23 444 55
Q ss_pred HHhcCCCCCCCCccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccCCCCCCCCCCCCCCCchhHHH
Q 010020 270 AEALEFTAPMRNSID-AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMEL 348 (520)
Q Consensus 270 a~~LG~~~~~~n~~~-~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~~~~GSSiMPqKrNP~~~E~ 348 (520)
++.|||. .|+++ |+++||+++|++++++.++++|+|||+||++|+|+|+ +.++++++++|||||||||||+.+|.
T Consensus 234 ~~~LGl~---~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~-~~E~~~~~~~GSSiMP~K~NP~~~E~ 309 (462)
T 2ptr_A 234 VTSLGIQ---WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNH-FKQKTIAGEIGSSTMPHKVNPIDFEN 309 (462)
T ss_dssp HHHTTCE---ECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-EEECCCTTCCSCSSCTTCCCCHHHHH
T ss_pred HHHhCCC---CCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-hhccCCCCCCcCCCCCCCCCcHHHHH
Confidence 6669995 56788 5999999999999999999999999999999999998 55666789999999999999999999
Q ss_pred hhhhHhhhhccHHHHHHHHccCc-cccccccccccc--cHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcccChhHHH
Q 010020 349 VRGKSARVIGDLVTLLTLCKGLP-LAYNRDLQEDKE--PTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDAT 425 (520)
Q Consensus 349 i~~~a~~v~g~~~~~~~~~~~~p-~~~erD~~~~~~--~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at 425 (520)
++++|++++|+..+++.++ | .+||||++++.. ++++++..+..++..+..+++||+||++||++++..++.++|
T Consensus 310 i~~~a~~v~g~~~~~~~~~---~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~~t 386 (462)
T 2ptr_A 310 SEGNLGLSNAVLQHLASKL---PVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHTTCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHhh---hhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCchHH
Confidence 9999999999999887654 5 699999987553 799999999999999999999999999999999998888888
Q ss_pred HHHHHHHHc-CCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCChHHHHhccChhHhhhhcccCCCccHHHHHH
Q 010020 426 TLADYLVNK-QVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTE 504 (520)
Q Consensus 426 ~la~~Lv~~-G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~ 504 (520)
+.++.++.+ |++ +||++|+++++.+..+|+++.|++.+ +. +.+.+.+++. ++||+. |.|+++.++++
T Consensus 387 e~~~~~l~~~G~~--~A~~iv~~~~~~~~~~~~~l~e~~~~-~~-~~~~~~~~l~-~ldp~~-------~~~~a~~~~~~ 454 (462)
T 2ptr_A 387 EPIQTVMRRYGIE--KPYEKLKELTRGKRVDAEGMKQFIDG-LA-LPEEEKARLK-AMTPAN-------YIGRAITMVDE 454 (462)
T ss_dssp HHHHHHHHHTTCS--SHHHHHHHC-----CCHHHHHHHHHT-SS-SCHHHHHHHH-TCCGGG-------CCTTHHHHHHH
T ss_pred HHHHHHHHhhChH--HHHHHHHHHHHHHHHcCCCHHHHHHh-cC-CCcccHHHHH-hCCHHH-------HhChHHHHHHH
Confidence 888888877 777 99999999999887788888888753 21 2222356788 999995 99999988876
Q ss_pred H
Q 010020 505 Q 505 (520)
Q Consensus 505 ~ 505 (520)
.
T Consensus 455 ~ 455 (462)
T 2ptr_A 455 L 455 (462)
T ss_dssp G
T ss_pred H
Confidence 4
No 25
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.8e-74 Score=617.85 Aligned_cols=415 Identities=16% Similarity=0.152 Sum_probs=337.5
Q ss_pred ccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHc-CC--C---CHHhHHHHHHHHHHHHHHH-h-cCC
Q 010020 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQ-GL--I---SDSDKNSILRGLDEIERQI-E-AGK 131 (520)
Q Consensus 60 ~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~-Gi--I---~~~~a~~I~~al~~i~~~~-~-~~~ 131 (520)
.+|++||+.+++++...|+ |..++++++.+++||++||+++ |+ | +++++++|.++++++..+. . ..+
T Consensus 13 s~~~gRy~~~~~~~~~~fs-----d~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d~~~~~~ 87 (459)
T 3bhg_A 13 SPIDGRYVNKTRALSPYFS-----EFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKE 87 (459)
T ss_dssp STTTTTTHHHHGGGTTTSS-----HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CcccccccCChHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccccHHHHHH
Confidence 3699999877779999998 4688999999999999999999 88 4 4899999999886653210 0 000
Q ss_pred cccccCCCchhhhHHHHHHHHhCC------CCCcccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Q 010020 132 FMWRTDREDVHMNIEAALTDIIGE------PAKKLHTARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKNE 204 (520)
Q Consensus 132 ~~~~~~~~dv~~~ie~~l~e~~g~------~g~~lH~G~S~nDi~~Ta~~L~lr~~l~-~l~~~L~~l~~~L~~lA~~~~ 204 (520)
.+ ...+||| +++|+.|.+.+|+ .|+|||+|+|||||++|+++|++|+++. .|.+.|..|+++|.++|++|+
T Consensus 88 ~e-~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~ 165 (459)
T 3bhg_A 88 FE-KQTNHDV-KAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHA 165 (459)
T ss_dssp HT-TTCSSHH-HHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HH-HhcCCCh-HHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00 2358999 9999999999983 5799999999999999999999999999 699999999999999999999
Q ss_pred CccccccccCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCC------CCC------ccHHHHHHh
Q 010020 205 GLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGT------GLP------IDRFMTAEA 272 (520)
Q Consensus 205 ~t~m~GrTH~Q~A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt------~~~------~~r~~la~~ 272 (520)
+++||||||+||||||||||||++|+++|.|+++||.+++ .++.||||+ || .+| +++ .+++.
T Consensus 166 ~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAv-GT~~a~~~~~~~~~~~~~~~-~~~~~ 239 (459)
T 3bhg_A 166 DVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVL----IPAKFNGAV-GNYNAHVAAYPEVDWRKHCA-NFVTS 239 (459)
T ss_dssp TCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCSS-SSCHHHHHHCTTSCHHHHHH-HHHHH
T ss_pred CCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccccc-ccccccccccCcccHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999987 356666787 88 233 544 45555
Q ss_pred cCCCCCCCCccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccCCCCCCCCCCCCCCCchhHHHhhh
Q 010020 273 LEFTAPMRNSID-AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRG 351 (520)
Q Consensus 273 LG~~~~~~n~~~-~~~~rd~~~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~ 351 (520)
|||..+ +++ ++++||+++|++++++.++++|+|||+||++|+|.++ ..++++++++|||||||||||+.+|.+++
T Consensus 240 LGl~~~---~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~-~~e~~~~~~~GSSiMP~K~NP~~~e~~~g 315 (459)
T 3bhg_A 240 LGLSFN---AYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGY-FKQKTIAEEVGSSTMPHKVNPIDFENAEG 315 (459)
T ss_dssp TTCEEC---SSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-EEECC------CCSSCCCCCTHHHHHHHH
T ss_pred hCCCCC---ccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-eehccCCCCCCCCCCCCCcChHHHHHHHH
Confidence 999743 455 7899999999999999999999999999999999988 33556678999999999999999999999
Q ss_pred hHhhhhccHHHHHHHHccCccccccccccccc--cHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcccChhHHHHHHH
Q 010020 352 KSARVIGDLVTLLTLCKGLPLAYNRDLQEDKE--PTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLAD 429 (520)
Q Consensus 352 ~a~~v~g~~~~~~~~~~~~p~~~erD~~~~~~--~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~ 429 (520)
+++.+.|....++..+ .+++||||+++++. .+++++..+..+++.+..+++||+||+++|++++..++.++++.++
T Consensus 316 ~~~l~~~~~~~~~~~l--~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~~te~~~ 393 (459)
T 3bhg_A 316 NLGLSNALFIHFANKL--TQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQ 393 (459)
T ss_dssp HHHHHHHHHHHHHHHT--TCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTEEECHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCchHHHHHH
Confidence 9999999888876644 14799999987643 6899999999999999999999999999999999888877777776
Q ss_pred -HHHHcCCChhhHHHHHHHHHHHHHHcCCChhHhhHHHHhhcCCCChHHHHhccChhHhhhhcccCCCccHHHHHHH
Q 010020 430 -YLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQ 505 (520)
Q Consensus 430 -~Lv~~G~~fr~Ah~~v~~~v~~a~~~g~~l~el~~~~~~~~~~~~~~~~~~~ldp~~~v~~r~~~gG~a~~~v~~~ 505 (520)
.|+++|++ +||++|+++++....++.+|.+++.+ +. +.+...+++. ++||.. |.|.++.+++++
T Consensus 394 ~~L~~~G~~--~A~~iv~~~~~~~~~~~~~l~~~l~~-l~-~~~~~~~~l~-~~dp~~-------y~g~a~~~~~~~ 458 (459)
T 3bhg_A 394 TVMRRYNEP--NAYEQLKELTRGQMIDAENLKKFIKT-LS-IPEEAKAELM-KLTPET-------YTGLATQLVKAF 458 (459)
T ss_dssp HHHHHTTCT--THHHHHHHHHTTSCCCHHHHHHHHHT-SC-SCHHHHHHHH-HCCGGG-------CCTTHHHHHHHC
T ss_pred HHHHHhChH--HHHHHHHHHHhhcccccccHHHHHHh-cC-CCchhHHHHH-hCCHHH-------HhCcHHHHHHhc
Confidence 45566776 99999999998221122345555432 00 1111235665 899995 999999998763
No 26
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=7.3e-73 Score=587.10 Aligned_cols=341 Identities=21% Similarity=0.168 Sum_probs=283.7
Q ss_pred ccccccCCCcccHHHHHHhcccchhccHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHhcCCcccccC
Q 010020 58 EVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTD 137 (520)
Q Consensus 58 ~~~~~g~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~~A~a~al~e~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~ 137 (520)
++.+|+.+|+ +.++...|++.. ++++...+++|||++|+++|+||++++++|.++|+++..+...-+ .....
T Consensus 7 ~~~l~~~~~~--~~~m~~~fs~~~-----~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~~~-~~~~~ 78 (359)
T 2fel_A 7 EHPFLSGLFG--DSEIIELFSAKA-----DIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALR-HGVAK 78 (359)
T ss_dssp SCTTTHHHHC--CHHHHGGGSHHH-----HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHHHH-HHHHH
T ss_pred cccccccccC--CHHHHHHcCcHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHHHH-hhccc
Confidence 4567887775 568999998764 456777888999999999999999999999999876531110000 00011
Q ss_pred CCchhhhHHHHHHHHhC-CCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCC
Q 010020 138 REDVHMNIEAALTDIIG-EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 216 (520)
Q Consensus 138 ~~dv~~~ie~~l~e~~g-~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~GrTH~Q~ 216 (520)
.++.+.++++.+.+.+| +.++|||+|+||||++||+++|++|+++..|.+.|..|+++|.++|++|++++||||||+||
T Consensus 79 ~~~~~~~~~~~l~~~~g~~~~~~vH~G~SsnDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~~~GrTHlQ~ 158 (359)
T 2fel_A 79 DGVVVPELIRQMRAAVAGQAADKVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQA 158 (359)
T ss_dssp HSSSHHHHHHHHHTTSCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCcHHHHHHHHHHHcCccccchhcCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcc
Confidence 22344677888888898 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCC----ccHHHHHHhcCCCCCCCCccccccchHHH
Q 010020 217 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP----IDRFMTAEALEFTAPMRNSIDAVSDRDFV 292 (520)
Q Consensus 217 A~P~TfG~~la~~~~~l~r~~~rL~~~~~r~~~~plGg~a~~Gt~~~----~~r~~la~~LG~~~~~~n~~~~~~~rd~~ 292 (520)
|||||||||+++|+++|.|+++||.+++++++.+||||++++|++++ .+++++++.|||+.+. +|+++||++
T Consensus 159 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGT~~~~~~~~~~~~~~~a~~LG~~~~~----~~~~~RD~~ 234 (359)
T 2fel_A 159 AIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRP----QWHNQRDGI 234 (359)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCCTTSSCTTTGGGHHHHHHHHHHHHTCBCCC----CCTTCCHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHhccCccCcchHHHHHHHHHHHhCcCCCc----hHHhccHHH
Confidence 99999999999999999999999999999999999999764455543 6789999999999765 589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccCCCCCCCCCCCCCCCchhHHHhhhhHhhhhccHHHHHHHHccCcc
Q 010020 293 LEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 372 (520)
Q Consensus 293 ~e~~~~la~la~~L~ria~Dl~ll~s~e~gev~l~~~~~~GSSiMPqKrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~ 372 (520)
+|++++++.++++|+|||+||++|+|.| ||+.+|. ++|||||||||||+.+|.++++++++.|++++++.++ +.
T Consensus 235 ~e~~~~l~~~a~~L~kia~Dirll~s~e-~Ei~~~~--~~GSS~MP~K~NP~~~E~i~~~a~~v~~~~~~~~~~~---~~ 308 (359)
T 2fel_A 235 AEFANLLSLVTGTLGKFGQDIALMAEIG-SEIRLSG--GGGSSAMPHKQNPVNAETLVTLARFNAVQISALHQSL---VQ 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTEEEC--------------CCHHHHHHHHHHHHHHHHHHHHHHTT---CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CeecCCC--CCCCccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHh---hc
Confidence 9999999999999999999999999999 9999884 5999999999999999999999999999999988655 67
Q ss_pred cccccc---ccccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHh
Q 010020 373 AYNRDL---QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKA 416 (520)
Q Consensus 373 ~~erD~---~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~ 416 (520)
|+|||. ..+|..+|+++..+..+|..+..++++|+||+++|...
T Consensus 309 ~~er~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 309 EQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 999996 45678899999999999999999999999999999764
No 27
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=22.97 E-value=78 Score=28.07 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=28.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHhcccChhHHHHHHHHHHHc-CCChh
Q 010020 379 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNK-QVPFR 439 (520)
Q Consensus 379 ~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~Lv~~-G~~fr 439 (520)
.++|..+.+.++.+..--....+++..|+ .|+...-.+-...|-.|.+.+|+. |.+|+
T Consensus 30 ~~Dw~~~leicD~I~~~~~~~keA~ral~---krl~~~n~~vql~AL~LLd~~vkNcG~~Fh 88 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGSTPNGAKDCLKAIM---KRVNHKVPHVALQALTLLGACVANCGKIFH 88 (163)
T ss_dssp SCCHHHHHHHHHHHHHSSSHHHHHHHHHH---HHHTCSSHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CcCHHHHHHHHHHHhCCCccHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45677777877776532222222222211 011100011224466788888887 77665
No 28
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=20.21 E-value=4.1e+02 Score=22.69 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=49.5
Q ss_pred HhHHHHHHHHHHHHHHHhcCCcccccCCCchhhhHHHHHHHHhC-CCCCcccCCCCchhHHHHHHHHHHHHHHHHHH---
Q 010020 111 SDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIG-EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIV--- 186 (520)
Q Consensus 111 ~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~e~~g-~~g~~lH~G~S~nDi~~Ta~~L~lr~~l~~l~--- 186 (520)
+.-++|.++..++..+. ++.- + -.+.+.+.+| ..+..-|+-.|..|++...+.-.+.+....+.
T Consensus 31 ~~r~~Il~aa~~l~~~~---G~~~------~---tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~ 98 (218)
T 3dcf_A 31 DRRTQIIKVATELFREK---GYYA------T---SLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIA 98 (218)
T ss_dssp HHHHHHHHHHHHHHHHT---CTTT------C---CHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHc---Cccc------C---cHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776542 2221 1 1467788888 55554455569999998777665555444332
Q ss_pred -------HHHHHHHHHHHHHHHHcCCcc
Q 010020 187 -------RSIQRLQVALVKLALKNEGLI 207 (520)
Q Consensus 187 -------~~L~~l~~~L~~lA~~~~~t~ 207 (520)
+.+..+...+.....+++...
T Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 126 (218)
T 3dcf_A 99 AGPGSPGERIHALLVEHTRTILRNLDAN 126 (218)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcchHHH
Confidence 344555555666555554433
Done!