RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010020
(520 letters)
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 882 bits (2282), Expect = 0.0
Identities = 365/463 (78%), Positives = 403/463 (87%)
Query: 55 ASKEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKN 114
A+KE KLWGGRFEE VT AVEKF ESIS+DK LYK DIMGSKAHASMLAKQG+I+D D++
Sbjct: 12 AAKEKKLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRD 71
Query: 115 SILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDF 174
SIL GLDEIE++IEAGKF WR DREDVHMN EA LT++IGEPAKKLHTARSRNDQV TD
Sbjct: 72 SILDGLDEIEKEIEAGKFEWRPDREDVHMNNEARLTELIGEPAKKLHTARSRNDQVATDT 131
Query: 175 RLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLE 234
RLWCRDAID I + I+ LQVALV+LA KN L+VPGYTHLQRAQPVLL H LL++VEQLE
Sbjct: 132 RLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLE 191
Query: 235 RDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLE 294
RDAGRL DCR R+NFCPLG+CALAGTGLPIDRFMTA+ L FTAPMRNSIDAVSDRDFVLE
Sbjct: 192 RDAGRLVDCRPRVNFCPLGSCALAGTGLPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLE 251
Query: 295 FLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSA 354
FL ANSI AIHLSRLGEEWVLWASEEFGF+TPSD+VSTGSSIMPQKKNPDPMELVRGKSA
Sbjct: 252 FLFANSITAIHLSRLGEEWVLWASEEFGFVTPSDAVSTGSSIMPQKKNPDPMELVRGKSA 311
Query: 355 RVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIK 414
RVIGDLVT+L LCKGLP AYNRDLQEDKEP FDSV T+ MLEV+ EFAQNITFN ERIK
Sbjct: 312 RVIGDLVTVLALCKGLPTAYNRDLQEDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIK 371
Query: 415 KALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF 474
K+LPAG LDATTLADYLV K VPFR +H IVG AVAL SK C+L DL+L++++S+NPVF
Sbjct: 372 KSLPAGMLDATTLADYLVRKGVPFRETHHIVGAAVALAESKGCELSDLTLEDLKSINPVF 431
Query: 475 DKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGINR 517
++DVYE LGVEN++ KF S+GSTGS V EQL W KL I
Sbjct: 432 EEDVYEVLGVENSVEKFDSYGSTGSRSVLEQLEKWRTKLEITS 474
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 715 bits (1847), Expect = 0.0
Identities = 256/458 (55%), Positives = 315/458 (68%)
Query: 57 KEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSI 116
KLWGGRF E + VE+FT SIS+DK L + DI GS AHA MLAKQG++S+ + I
Sbjct: 2 MSNKLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKI 61
Query: 117 LRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRL 176
L GLDEI +IEAGKF + + ED+HM IEA LT+ IG+ KLHT RSRNDQV TD RL
Sbjct: 62 LAGLDEILEEIEAGKFEFSPELEDIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRL 121
Query: 177 WCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERD 236
+ RD ID I + LQ AL+ LA ++ I+PGYTHLQRAQPV H LLAY E L RD
Sbjct: 122 YLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARD 181
Query: 237 AGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFL 296
RL+D R R+N PLG+ ALAGT PIDR TAE L F NS+DAVSDRDF LEFL
Sbjct: 182 LERLRDARKRVNRSPLGSAALAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFL 241
Query: 297 SANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARV 356
SA S++ +HLSRL EE +LW+S+EFGF+ D+ STGSSIMPQKKNPD EL+RGK+ RV
Sbjct: 242 SAASLLMVHLSRLAEELILWSSQEFGFVELPDAFSTGSSIMPQKKNPDVAELIRGKTGRV 301
Query: 357 IGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKA 416
G+L LLT+ KGLPLAYNRDLQEDKEP FD+V T+ LE A + +T N ER+++A
Sbjct: 302 YGNLTGLLTVMKGLPLAYNRDLQEDKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREA 361
Query: 417 LPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDK 476
G+ AT LADYLV K VPFR +H+IVGKAV + L DLSL+E+++ +P+ +
Sbjct: 362 AGKGFSTATDLADYLVRKGVPFREAHEIVGKAVREAEERGVDLADLSLEELQAFSPLITE 421
Query: 477 DVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLG 514
DVYE L E ++ +S G T V EQ+ A+L
Sbjct: 422 DVYEVLTPEGSVAARNSIGGTAPEQVREQIARAKARLA 459
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 642 bits (1659), Expect = 0.0
Identities = 233/435 (53%), Positives = 302/435 (69%), Gaps = 1/435 (0%)
Query: 80 SISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDRE 139
SIS+D+ L++ DI GS AHA MLA+QG++++ + IL GL +I +IEAG F + E
Sbjct: 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDE 60
Query: 140 DVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKL 199
D+HM IE L + IG+ KLHT RSRNDQV TD RL+ RDA+ ++ + LQ AL+
Sbjct: 61 DIHMAIERRLIERIGDVGGKLHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDR 120
Query: 200 ALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAG 259
A ++ I+PGYTHLQRAQP+ H LLAY E LERD RL D R+N PLGA ALAG
Sbjct: 121 AEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLADAYKRVNVSPLGAGALAG 180
Query: 260 TGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 319
T PIDR TAE L F P NS+DAVSDRDFVLEFLSA +++ +HLSRL E+ +LW+++
Sbjct: 181 TTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQ 240
Query: 320 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQ 379
EFGF+ D+ STGSSIMPQKKNPD +EL+RGK+ RVIG L LLT KGLPLAYN+DLQ
Sbjct: 241 EFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQ 300
Query: 380 EDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLV-NKQVPF 438
EDKEP FD+V T++ L + +T N ER+++A AG+ AT LADYLV K VPF
Sbjct: 301 EDKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAEAGFSTATDLADYLVREKGVPF 360
Query: 439 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 498
R +H IVG+AV L K L DL+L E+++++P+F++DV E L EN++ + +S+G T
Sbjct: 361 REAHHIVGRAVRLAEEKGKDLSDLTLAELQAISPLFEEDVREALDPENSVERRTSYGGTA 420
Query: 499 SACVTEQLHSWVAKL 513
A V EQ+ A L
Sbjct: 421 PAEVREQIARARALL 435
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 633 bits (1636), Expect = 0.0
Identities = 254/456 (55%), Positives = 313/456 (68%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
KLWGGRF V++F SIS+DK L ++DI GS AHA MLAKQG+I++ + IL G
Sbjct: 4 KLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEG 63
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
L+E+ +I AGKF D EDVH IEA L + IG+ KLHT RSRNDQV TD RLW R
Sbjct: 64 LEELLEEIRAGKFELDPDDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLR 123
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
D + ++ I+ LQ AL+ LA ++ ++PGYTHLQRAQPV H LLAY E L RD R
Sbjct: 124 DKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIER 183
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L+D R+N PLGA ALAGT PIDR TAE L F A RNS+DAVSDRDF+LEFLSA
Sbjct: 184 LRDALKRVNVSPLGAGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAA 243
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
++I +HLSRL E+ +LW+S EFGFI D STGSSIMPQKKNPD +EL+RGK+ RVIG
Sbjct: 244 ALIMVHLSRLAEDLILWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIGA 303
Query: 360 LVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA 419
L LLT+ KGLPLAYNRDLQEDKEP FDSV T+ L V A +T N ER+++A A
Sbjct: 304 LTGLLTIMKGLPLAYNRDLQEDKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAAEA 363
Query: 420 GYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVY 479
G+ AT LADYLV K VPFR +H+IVG+AV + L DLSL+E++S++P+ D+DVY
Sbjct: 364 GFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVY 423
Query: 480 EYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGI 515
E L E ++ K +S G T V E + A+L
Sbjct: 424 EVLTPEESVAKRNSEGGTAPEEVREAIARAKARLAA 459
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 569 bits (1468), Expect = 0.0
Identities = 225/447 (50%), Positives = 299/447 (66%), Gaps = 1/447 (0%)
Query: 61 LWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGL 120
LWGGRF + V KF S+S+DK L ++DI GS AH ML K G++++ + I+ GL
Sbjct: 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGL 60
Query: 121 DEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEP-AKKLHTARSRNDQVLTDFRLWCR 179
+E++ + G F+ D ED+HM IE L D +GE KLHT RSRNDQV TD RL+ R
Sbjct: 61 NELKEEGREGPFILDPDDEDIHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLR 120
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
D + + ++ LQ AL++LA K+ ++PGYTHLQRAQP+ L H LLAY E L RD R
Sbjct: 121 DHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRAQPITLAHHLLAYAEMLLRDYER 180
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
LQD R+N PLG+ ALAGTG PIDR AE L F A NS+DAVSDRDF+LE L
Sbjct: 181 LQDALKRVNVSPLGSGALAGTGFPIDREYLAELLGFDAVTENSLDAVSDRDFILELLFVA 240
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
++I +HLSR E+ +LW++ EFGF+ D S+GSSIMPQKKNPD EL+RGK+ RV G+
Sbjct: 241 ALIMVHLSRFAEDLILWSTGEFGFVELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGN 300
Query: 360 LVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA 419
L +L K LPLAYNRDLQEDKEP FD++KT+ LE++ IT N ER+++A A
Sbjct: 301 LTGMLMTLKALPLAYNRDLQEDKEPLFDALKTVELSLEMATGMLDTITVNKERMEEAASA 360
Query: 420 GYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVY 479
G+ +AT LADYLV K VPFR +H IVG+ VA + + L++L+L+E++ +P FD+DVY
Sbjct: 361 GFSNATELADYLVRKGVPFREAHHIVGELVATAIERGKGLEELTLEELQKFSPEFDEDVY 420
Query: 480 EYLGVENAIRKFSSFGSTGSACVTEQL 506
E L E+++ K + G T V + +
Sbjct: 421 EALDPESSVEKRDAKGGTAPEEVLQAI 447
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 471 bits (1215), Expect = e-163
Identities = 198/447 (44%), Positives = 281/447 (62%), Gaps = 1/447 (0%)
Query: 61 LWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGL 120
LWGGRF ++ ++F +S+ +D L + DI+GS A + L G+++ ++ + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEAL 62
Query: 121 DEIERQIEAG-KFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
+E+ ++ A + + +D ED+H +E L D +G+ KKLHT RSRNDQV TD +LWC+
Sbjct: 63 NELLEEVRANPQQILASDAEDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCK 122
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
D + ++ ++++LQ ALV+ A N+ ++PGYTHLQRAQPV H LAYVE L RD R
Sbjct: 123 DQVAELLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESR 182
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
LQD R++ PLG+ ALAGT IDR A L F + RNS+D+VSDRD VLE LS
Sbjct: 183 LQDALKRLDVSPLGSGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDA 242
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
SI +HLSR E+ + + S E GF+ SD V++GSS+MPQKKNPD +EL+RGK RV G
Sbjct: 243 SISMVHLSRFAEDLIFFNSGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGA 302
Query: 360 LVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA 419
L +L KGLPLAYN+D+QEDKE FD++ T + L ++A I R ++A
Sbjct: 303 LTGMLMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQ 362
Query: 420 GYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVY 479
GY +AT LADYLV K VPFR +H IVG+AV + + L+DL L E++ + V DVY
Sbjct: 363 GYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFSSVIGDDVY 422
Query: 480 EYLGVENAIRKFSSFGSTGSACVTEQL 506
L +++ + K ++ G V + +
Sbjct: 423 PILSLQSCLDKRAAKGGVSPQQVAQAI 449
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 468 bits (1207), Expect = e-160
Identities = 198/460 (43%), Positives = 290/460 (63%), Gaps = 1/460 (0%)
Query: 61 LWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGL 120
LWGGRF ++ ++F +S+ +D L + DI+GS A + L G++S+ ++ + L
Sbjct: 3 LWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELAL 62
Query: 121 DEIERQIEAG-KFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
+E++ ++ + + +D ED+H +E L +G+ KKLHT RSRNDQV TD +LWCR
Sbjct: 63 NELKLEVMEDPEQILLSDAEDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCR 122
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
++ ++ +LQ +V +A +++G ++PGYTHLQRAQPV H LAYVE ERD R
Sbjct: 123 QQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSR 182
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L+D R++ CPLG+ ALAGT PIDR A L F RNS+D+VSDRD V+E +S
Sbjct: 183 LEDALTRLDTCPLGSGALAGTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVA 242
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
SI +HLSRL E+ + + S E GFI +D+V++GSS+MPQKKNPD +EL+RGK+ RV G
Sbjct: 243 SISMLHLSRLAEDLIFYNSGESGFIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGA 302
Query: 360 LVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA 419
L ++ K LPLAYN+D+QEDKE FD++ T +E++A I N ER +A
Sbjct: 303 LAGMMMTVKALPLAYNKDMQEDKEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAAKQ 362
Query: 420 GYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVY 479
GY +AT LADYLV K +PFR +H IVG AV ++K C L++LSL++++ + V + DVY
Sbjct: 363 GYANATELADYLVAKGIPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDVIEDDVY 422
Query: 480 EYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGINRSS 519
+ L +E+ + K + G V + +L +S
Sbjct: 423 QILTIESCLEKRCALGGVSPEQVAYAVEQADKRLAARDTS 462
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 376 bits (969), Expect = e-128
Identities = 129/325 (39%), Positives = 176/325 (54%), Gaps = 3/325 (0%)
Query: 88 YKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEA 147
+ D+ KAHA LA+ GL+ +IL LDEI I A + M +E
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEE 60
Query: 148 ALTDIIGE-PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGL 206
L + GE +HT RS ND V T RL RDA+D ++ +++ L AL A +++
Sbjct: 61 VLAERAGELNGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDT 120
Query: 207 IVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PI 264
++PG THLQ AQP L H L A+ +LERD RL++ R+N PLG A+ PI
Sbjct: 121 VMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVLPLGGGAVGTGANAPPI 180
Query: 265 DRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFI 324
DR AE L F P NS AVSDRDF++E LSA +++A+ LS++ + L +S EFG +
Sbjct: 181 DRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEV 240
Query: 325 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEP 384
D+ GSSIMPQK NP +ELVRG + RVIG+L LL KG PL N D ++E
Sbjct: 241 ELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPVEREA 300
Query: 385 TFDSVKTIVGMLEVSAEFAQNITFN 409
DS + L + + + N
Sbjct: 301 LPDSFDLLDAALRLLTGVLEGLEVN 325
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 249 bits (637), Expect = 7e-79
Identities = 109/312 (34%), Positives = 158/312 (50%), Gaps = 17/312 (5%)
Query: 64 GRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEI 123
GRF + FT+ ++ L + DI G A AK ++ + +I++ LDE+
Sbjct: 1 GRFTVPADALMGIFTDRSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAIIKALDEV 60
Query: 124 ERQIEAG-KFMWRTDREDVHMNIEAALTDIIGE-------PAKKLHTARSRNDQVLTDFR 175
+ +A F + +E + L ++IGE P K+HT +S NDQV T R
Sbjct: 61 AEEGKADDAFPLKVIQEGSGTAVNMNLNEVIGELLGQLVHPNDKVHTGQSSNDQVPTALR 120
Query: 176 LWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLE 234
L + A+ + ++ ++ +L AL + A + ++ PG THLQ A PV L L Y L
Sbjct: 121 LALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALT 180
Query: 235 RDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF---MTAEALEF----TAPMRNSIDAVS 287
RD RL+ R+ PLG GTGL D + A+ L F P NS +A S
Sbjct: 181 RDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNSFEATS 240
Query: 288 DRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVST-GSSIMPQKKNPDPM 346
DRD V+EF A +++A HLS+ + L +S FGF+ S GSSIMP K NPD +
Sbjct: 241 DRDAVVEFSGALALLATHLSKFANDLRLLSSGPFGFVELSLPEGEPGSSIMPGKVNPDQL 300
Query: 347 ELVRGKSARVIG 358
EL+RGK+ RV G
Sbjct: 301 ELLRGKAGRVFG 312
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 213 bits (545), Expect = 2e-60
Identities = 122/375 (32%), Positives = 179/375 (47%), Gaps = 8/375 (2%)
Query: 81 ISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAG--KFMWRTDR 138
A H +AH ML G+++ +L D R +AG + R
Sbjct: 431 SEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLL---DAHRRLRDAGFAPLLARPAP 487
Query: 139 EDVHMNIEAALTDIIGEPAKK-LHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALV 197
++M EA L + +GE L TARSRND T +L R+A ++ RL+ ALV
Sbjct: 488 RGLYMLYEAYLIERLGEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALV 547
Query: 198 KLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACAL 257
A N +P Y+ Q A P L H LLA L R+ L ++ CPLGA A
Sbjct: 548 FKASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAG 607
Query: 258 AGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWA 317
GT PID A L F P NS+DAV+ RD VL FLSA + I+ LSRL ++ LW
Sbjct: 608 GGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWT 667
Query: 318 SEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 377
+ EF ++ D+++ GSS++PQKKNP +E V+G++ V G L + P + + +
Sbjct: 668 TREFALVSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFE 727
Query: 378 L-QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLV-NKQ 435
P + I V + + R++ L G + AT +A+ LV +
Sbjct: 728 AGSPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGVSATAVAESLVVRRS 787
Query: 436 VPFRTSHDIVGKAVA 450
+ FR++H VG+A+
Sbjct: 788 ISFRSAHTQVGQAIR 802
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 187 bits (478), Expect = 3e-56
Identities = 86/263 (32%), Positives = 115/263 (43%), Gaps = 54/263 (20%)
Query: 143 MNIEAALTDIIGEPAKKLH------TARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVAL 196
+E L GE A LH RS ND T RL RDA+D ++ ++ L AL
Sbjct: 14 ALVEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDAL 73
Query: 197 VKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA 256
A ++G ++PG THLQ AQPV L + L A+ + L RD RL++
Sbjct: 74 ALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEEA------------- 120
Query: 257 LAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLW 316
V E L A ++ A HLS++ E+ L
Sbjct: 121 ----------------------------------AVAEALDALALAAAHLSKIAEDLRLL 146
Query: 317 ASEEFGFITPSDSV-STGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN 375
S EFG + GSSIMPQK NP ELVRG + VIG+LV +LT KG P N
Sbjct: 147 LSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDN 206
Query: 376 RDLQEDKEPTFDSVKTIVGMLEV 398
D +E DS+ ++ L +
Sbjct: 207 EDSPSMREILADSLLLLIDALRL 229
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 158 bits (402), Expect = 8e-43
Identities = 115/413 (27%), Positives = 198/413 (47%), Gaps = 43/413 (10%)
Query: 87 LYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDV----- 141
L K KAH ML ++ L+ + IL L ++E +I + ++ ED+
Sbjct: 37 LLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVE-EIPEEQLLYTEQHEDLFFLVE 95
Query: 142 HMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLAL 201
H+ + A +D + +H RSRND +T +R+ R + ++ LQ ++++LA
Sbjct: 96 HLISQEAKSDFV----SNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAA 151
Query: 202 KNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTG 261
++ I+P YTH Q AQP H LA + ++RD R++ +N P+GA AL+ T
Sbjct: 152 DHKETIMPAYTHTQPAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTS 211
Query: 262 LPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEF 321
PI R A+ L FT + NS DAV+ D++LE S ++ + SR +++L A++E+
Sbjct: 212 FPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEY 271
Query: 322 GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQED 381
IT + SSIMPQK+NP +E R ++ +G+ T+ + P D ++D
Sbjct: 272 DGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGDIVDTEDD 331
Query: 382 KEP-----------TFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADY 430
+P F + ++ ++V + + ++ K A + T AD
Sbjct: 332 LQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSY-----KHA-----ITITDFADV 381
Query: 431 LV-NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYL 482
L N +PFR +H +A ++SL++ + L+ + KDV YL
Sbjct: 382 LTKNYGIPFRHAHH-AASVIA----------NMSLEQKKELHELCFKDVNIYL 423
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 126 bits (317), Expect = 2e-31
Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 14/354 (3%)
Query: 59 VKLW-GGRFEESVTDAVEKFTE-SISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSI 116
+K+W GG EE D + + I DK L K++I+ A+ LA++ LI++ +
Sbjct: 1 MKIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCV 60
Query: 117 LRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRL 176
+ L +I + D EDVH IE + G+ K SRN+QV D L
Sbjct: 61 INALIDIYK----NGIEIDLDLEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNL 116
Query: 177 WCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERD 236
+ ID I+ + L + + N +PGYTH ++A P+ + + L
Sbjct: 117 F---IIDKIIEIEKILYEIIKVIPGFNLKGRLPGYTHFRQAMPMTVNTYINYIKSILYHH 173
Query: 237 AGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFL 296
L + + P G + G+ + +E L ++N + + S +E +
Sbjct: 174 INNLDSFLMDLREMPYGYGSGYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENI 233
Query: 297 SANSI--IAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSA 354
S I +A+ LSR+ ++ +++ G IT D +TGSS+MP K+NPD +EL +G +A
Sbjct: 234 S-YLISSLAVDLSRICQDIIIYYEN--GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAA 290
Query: 355 RVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITF 408
I L + Y+RD Q K+ T + +L + NI F
Sbjct: 291 ESISVLSFIAQSELNKTTGYHRDFQIVKDSTISFINNFERILLGLPDLLYNIKF 344
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 95.4 bits (238), Expect = 5e-21
Identities = 94/388 (24%), Positives = 163/388 (42%), Gaps = 19/388 (4%)
Query: 102 LAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPA-KKL 160
A+ G+I I E +E K + DV + AL + +GE A + +
Sbjct: 34 QAELGVIPAEAAAEIDAAAAFAEFDLERIKEIEAETGHDV-KALVRALAEKVGEEASEYV 92
Query: 161 HTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPV 220
H + D + T L ++A+D I+ ++RL AL +LAL+++ + G TH Q A+P
Sbjct: 93 HFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPT 152
Query: 221 LLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALAGTGLPIDRFMTAEALEF 275
++ +L R RL++ R+ + GA AL G ++ + AE L
Sbjct: 153 TFGKKFANWLAELLRHLERLEEAEERIIVGKIGGAVGTLAALGDLGAEVEERV-AEKLGL 211
Query: 276 TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEE-WVLWASEEFGFITPSDSVSTGS 334
VS RD + EF SA +++A L + + +L +E P GS
Sbjct: 212 KPA--PISTQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGS 269
Query: 335 SIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQED--KEPTF-DSVKT 391
S MP K+NP E V G + + TLL L L + RDL + + D+
Sbjct: 270 SAMPHKRNPIDSENVTGLARVARALVSTLLEN---LVLWHERDLTDSSVERVILPDAFIA 326
Query: 392 IVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRTSHDIVGKAV 449
G L + + N ER+++ L G + + + L K + +H++V +
Sbjct: 327 ADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKA 386
Query: 450 ALCVSKECQLQDLSLDEMRSLNPVFDKD 477
+ + +L L + R + +++
Sbjct: 387 MKAWEQGKEFLELLLADERVTKYLSEEE 414
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 94.1 bits (235), Expect = 6e-21
Identities = 85/343 (24%), Positives = 134/343 (39%), Gaps = 51/343 (14%)
Query: 102 LAKQGLISDSDKNSILRGLDEIERQIEAGKFMW-------RTDREDVHMNIEAALTDIIG 154
A+ GLI +EI + + + DV + AL + G
Sbjct: 25 QAELGLIPKEA-------AEEIRAAADVFEIDAERIAEIEKETGHDV-IAFVYALAEKCG 76
Query: 155 EPAKK-LHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 213
E A + +H + D T L RDA+D I+ + L AL KLAL+++ + G TH
Sbjct: 77 EDAGEYVHFGATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTH 136
Query: 214 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GA----CALAGTGLPIDRFM 268
Q A P + +L R RL++ R R+ + GA +L G ++ +
Sbjct: 137 GQHALPTTFGKKFAVWAAELLRHLERLEEARERVLVGGISGAVGTHASLGPKGPEVEERV 196
Query: 269 TAEALEFTAPMRNSIDAVS----DRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFI 324
AE L P ++ RD + E LSA ++IA L ++ + L E G +
Sbjct: 197 -AEKLGLKVP------PITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGEV 249
Query: 325 T-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKE 383
P + GSS MP K+NP E + G + V L L + RDL
Sbjct: 250 EEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALE---NLVQWHERDL----- 301
Query: 384 PTFDSVK---------TIVGMLEVSAEFAQNITFNVERIKKAL 417
+ SV+ + L + + N ER+++ L
Sbjct: 302 -SDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNL 343
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 83.1 bits (206), Expect = 5e-17
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 163 ARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL 222
A+S ND T R+ + ++ ++ ++ LQ + A + + +I G T LQ A P+ L
Sbjct: 138 AQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITL 197
Query: 223 QHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR---FMTAEALEFT--- 276
AY L+RD R+Q R + LG A+ GTGL D + L
Sbjct: 198 GQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAV-GTGLNADPEYIERVVKHLAAITGL 256
Query: 277 --APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFGFIT-PSDSV 330
+ +DA + D +E A + A++LS++ + L +S G I P +V
Sbjct: 257 PLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLP--AV 314
Query: 331 STGSSIMPQKKNPDPMELVRGKSARVIGDLVT 362
GSSIMP K NP E+V + +VIG+ VT
Sbjct: 315 QPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVT 346
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 82.7 bits (205), Expect = 6e-17
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 11/225 (4%)
Query: 147 AALTDIIGEPAKK-LHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEG 205
LT G+ A + +H + D + T L RDA+D + R + L AL +LA +
Sbjct: 79 KQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRD 138
Query: 206 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALAGT 260
+ G THLQ A P+ + ++ +L R RL + R R+ GA +L
Sbjct: 139 TPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGTLASLGDQ 198
Query: 261 GLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE 320
GL + + A L P +I + RD + E S +++ L ++ + L E
Sbjct: 199 GLAVQEAL-AAELGLGVP---AIPWHTARDRIAELASFLALLTGTLGKIARDVYLLMQTE 254
Query: 321 FGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 364
G + P GSS MP K+NP EL+ + RV G LL
Sbjct: 255 IGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAALLL 299
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 82.4 bits (204), Expect = 9e-17
Identities = 78/290 (26%), Positives = 126/290 (43%), Gaps = 27/290 (9%)
Query: 102 LAKQGLISDSDKNSILRG-----LDEIER--QIEAGKFMWRTDREDVHMNIEAALTDIIG 154
LA+ G+I +R ++ R +IE R DV + AL + G
Sbjct: 34 LAELGVIPAEA-VKEIRAKANFTDVDLARIKEIE------AVTRHDV-KAVVYALKEKCG 85
Query: 155 EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
+ +H + ND V T L RDA++ I+ +++L L LA++ + ++ G TH
Sbjct: 86 AEGEFIHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHG 145
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCR----VRMNFCPLGACALAG-TGLPIDRFMT 269
Q A+P L + ++++R RL + V +G A A ++ +T
Sbjct: 146 QHAEPTTLGKKFALWADEMKRQLERLLQAKERIKVGGISGAVGTHAAAYPLVEEVEERVT 205
Query: 270 AEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEE-WVLWASEEFGFITPSD 328
E L P+ S RD E L A +++A L + + +L +E F P
Sbjct: 206 -EFLGL-KPVPISTQIEP-RDRHAELLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFG 262
Query: 329 SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 378
GSS MP K+NP E V G ARVI +++ + +PL + RDL
Sbjct: 263 KGQVGSSAMPHKRNPIDFENVCG-LARVIRSVLS--PALENVPLWHERDL 309
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 76.4 bits (189), Expect = 5e-15
Identities = 87/374 (23%), Positives = 150/374 (40%), Gaps = 62/374 (16%)
Query: 102 LAKQGLISDSDKNSI-------LRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIG 154
AK G+I I + + EIE + + DV + A+ + G
Sbjct: 31 WAKLGVIPAEAAEEIRKKAKFDVERVKEIEAET----------KHDV-IAFVTAIAEYCG 79
Query: 155 EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
E + +H + +D V T L R+A+D I++ ++ L L K AL+++ ++ G TH
Sbjct: 80 EAGRYIHFGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHG 139
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDRFMTAEAL 273
A+P + + +R RL++ R R+ + GA GT + +
Sbjct: 140 IHAEPTTFGLKFALWYAEFKRHLERLKEARERILVGKISGA---VGTYANLGPEVEERVA 196
Query: 274 EF----TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW-------VLWASEEFG 322
E P+ V RD E+LS ++IA L ++ E VL E F
Sbjct: 197 EKLGLKPEPISTQ---VIQRDRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVEEPF- 252
Query: 323 FITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDK 382
GSS MP K+NP E + G ARVI V + + + L + RD+
Sbjct: 253 -----SKGQKGSSAMPHKRNPILSENICG-LARVIRSNV--IPALENVALWHERDI---- 300
Query: 383 EPTFDSVKTIVG---------MLEVSAEFAQNITFNVERIKK--ALPAGYLDATTLADYL 431
+ SV+ ++ +L +N+ E +++ L G + + + L
Sbjct: 301 --SHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLAL 358
Query: 432 VNKQVPFRTSHDIV 445
V K + +++IV
Sbjct: 359 VEKGMSREEAYEIV 372
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 73.5 bits (181), Expect = 6e-14
Identities = 80/338 (23%), Positives = 130/338 (38%), Gaps = 65/338 (19%)
Query: 73 AVEKFTESISYDKALYKHD-----IMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQI 127
AVE F IS K + M KA A + G + ++I++ DEI
Sbjct: 29 AVENF--PISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKACDEIL--- 83
Query: 128 EAGKFMWRTDR-----------EDVHMNIEAAL----TDIIG---------EPAKKLHTA 163
GK D+ +MN + +++G P ++ +
Sbjct: 84 -DGKCH---DQFVVDVYQGGAGTSTNMNANEVIANRALELLGHEKGEYQYLHPNDHVNMS 139
Query: 164 RSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQ 223
+S ND T FR+ ++ ++ +++ L A + A + ++ G T LQ A P+ L
Sbjct: 140 QSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLG 199
Query: 224 HLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-----------RFMTAEA 272
A+ L+ D R+ + LG A+ GTG+ +T
Sbjct: 200 QEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAI-GTGINAPKGYIELVVKKLAEVTGLP 258
Query: 273 LEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS-------EEFGFIT 325
L P N I+A D + A +A+ LS++ + L +S E
Sbjct: 259 L---VPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNE---INL 312
Query: 326 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
P +V GSSIMP K NP E+V +VIG+ T+
Sbjct: 313 P--AVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTI 348
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 71.0 bits (174), Expect = 4e-13
Identities = 81/328 (24%), Positives = 134/328 (40%), Gaps = 44/328 (13%)
Query: 73 AVEKFTES---ISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEA 129
A E F S IS + +M KA A + G I +S N+I+ DEI +
Sbjct: 25 ASENFYISNNKISDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAACDEI---LNN 81
Query: 130 GKFMWRTDR-----------EDVHMNIEAALTDIIGE-------------PAKKLHTARS 165
GK D+ V+MN + ++ E P ++ ++S
Sbjct: 82 GKCH---DQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQKGEYQYLNPNDHVNKSQS 138
Query: 166 RNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHL 225
ND T FR+ ++ +V +I +L+ + A + ++ G T LQ A P+ L
Sbjct: 139 TNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQE 198
Query: 226 LLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTA-------- 277
A+ LE + ++ + LGA A+ GTGL + ++ A
Sbjct: 199 FEAFSILLEEEVKNIKRTAELLLEVNLGATAI-GTGLNTPPEYSPLVVKKLAEVTGLPCV 257
Query: 278 PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD--SVSTGSS 335
P N I+A SD + A +A+ +S++ + L +S + + + GSS
Sbjct: 258 PAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSS 317
Query: 336 IMPQKKNPDPMELVRGKSARVIGDLVTL 363
IMP K NP E+V +VIG+ T+
Sbjct: 318 IMPAKVNPVVPEVVNQVCFKVIGNDTTV 345
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 69.8 bits (171), Expect = 6e-13
Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 12/224 (5%)
Query: 147 AALTDIIGEP-AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEG 205
AL + A+ +H + D + T L RDA+D ++ + RL AL LA ++
Sbjct: 79 KALRKAVAGEAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRD 138
Query: 206 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA--LAGT--- 260
+ G T LQ+A P ++ + R RL R R G A LA
Sbjct: 139 TPMTGRTLLQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGGAAGTLAALGTR 198
Query: 261 GLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE 320
G + A L P ++ + RD + EF SA +++A L ++ + L + E
Sbjct: 199 GGAV-AAALAARLGLPLP---ALPWHTQRDRIAEFGSALALVAGALGKIAGDIALLSQTE 254
Query: 321 FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 364
G + ++ GSS MP K+NP L+ + RV G TL
Sbjct: 255 VGEVF--EAGGGGSSAMPHKRNPVGAALLAAAARRVPGLAATLH 296
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 67.9 bits (167), Expect = 4e-12
Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 25/219 (11%)
Query: 163 ARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL 222
++S ND T RL + ++ ++ LQ A A + ++ G T LQ A P+ L
Sbjct: 133 SQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTL 192
Query: 223 QHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID---RFMTAEAL-EFT-- 276
AY L+RD R+ R R+ LG A+ GTG+ + E L E T
Sbjct: 193 GQEFGAYATALKRDRARIYKARERLREVNLGGTAI-GTGINAPPGYIELVVEKLSEITGL 251
Query: 277 --APMRNSIDAVSDRD-FVLEFLSANSIIAIHLSRLGEEWVLWASEEFG-------FITP 326
N IDA + D FV E A +A+ LS++ + L +S G P
Sbjct: 252 PLKRAENLIDATQNTDAFV-EVSGALKRLAVKLSKIANDLRLLSS---GPRAGLGEINLP 307
Query: 327 SDSVSTGSSIMPQKKNPDPMELVRGKSARVIG-DL-VTL 363
+V GSSIMP K NP E+V + +VIG DL +T+
Sbjct: 308 --AVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITM 344
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 67.3 bits (164), Expect = 7e-12
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 15/216 (6%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 215
P ++ A+S ND T + +A++ +++++ + A + + +I G THLQ
Sbjct: 137 PNSHVNMAQSTNDAFPTAIHIATLNALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHLQ 196
Query: 216 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-RFMTAEALE 274
A P+ L AY LERD R+Q R + +GA A+ GTGL D ++ A
Sbjct: 197 DAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAV-GTGLNADPEYIEAVVKH 255
Query: 275 FTA----PMRNS---IDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG----F 323
A P+ + +DA + D E +A + +++S++ + L AS
Sbjct: 256 LAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEI 315
Query: 324 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+ P+ GSSIMP K NP E++ + +VIG+
Sbjct: 316 MLPAR--QPGSSIMPGKVNPVMPEVINQIAFQVIGN 349
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 63.2 bits (155), Expect = 1e-10
Identities = 75/267 (28%), Positives = 106/267 (39%), Gaps = 64/267 (23%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
++++LQ AL A + ++ G THLQ A P+ L Y QL RD R++ R+
Sbjct: 158 ALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERL 217
Query: 248 NFCPLGACALAGTGL--PID-RFMTAEAL-EFT----APMRNSIDAVSDRDFVLEFLSAN 299
LG A+ GTGL P A L E T N +A + D ++E A
Sbjct: 218 RELNLGGTAV-GTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGAL 276
Query: 300 SIIAIHLSR---------------LGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 344
+A+ LS+ LGE P + GSSIMP K NP
Sbjct: 277 KTLAVSLSKIANDLRLLSSGPRAGLGE-----------INLP--ANQPGSSIMPGKVNPV 323
Query: 345 PMELVRGKSARVIG-DL-VTL------LTLCKGLPL-AYNRDLQEDKEPTFDSVKTIVGM 395
E V +A+VIG D +T+ L L P+ AYN S++ +
Sbjct: 324 IPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPVIAYN---------LLQSIR----L 370
Query: 396 LEVSAE-FAQN----ITFNVERIKKAL 417
L + F I N ER K+ +
Sbjct: 371 LANACRSFRDKCVEGIEANEERCKEYV 397
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 63.2 bits (154), Expect = 1e-10
Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 44/260 (16%)
Query: 185 IVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCR 244
++ +++ L +L + + + ++ G THLQ A P+ L Y Q++ R+Q
Sbjct: 152 LIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTL 211
Query: 245 VRMNFCPLGACALAGTGLPID-RFMTAEA--------LEFTAPMRNSIDAVSDRDFVLEF 295
R+ G A+ GTGL F A L F N +A++ D +E
Sbjct: 212 PRLYELAQGGTAV-GTGLNTKKGFDEKIAAAVAEETGLPFVTA-PNKFEALAAHDAFVEL 269
Query: 296 LSANSIIAIHLSRLGEEWVLWASEE---FGFIT-PSDSVSTGSSIMPQKKNPDPMELVRG 351
A + +A+ L ++ + L S G + P GSSIMP K NP E +
Sbjct: 270 SGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLP--ENEPGSSIMPGKVNPTQCEALTM 327
Query: 352 KSARVIGDLVTL----------LTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAE 401
A+V+G+ V + L + K L +AYN + +I + + SA
Sbjct: 328 VCAQVMGNHVAITVGGSAGHFELNVFKPL-IAYN------------LLHSIRLLGDASAS 374
Query: 402 FAQN----ITFNVERIKKAL 417
F +N I N ERI K L
Sbjct: 375 FRKNCVRGIEANRERISKLL 394
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 61.9 bits (151), Expect = 4e-10
Identities = 100/425 (23%), Positives = 180/425 (42%), Gaps = 76/425 (17%)
Query: 97 AHASMLAKQGLISDSDKNSI----------LRGLDEIERQIEAGKFMWRTDREDVHMNIE 146
A A A+ GLI + I L + EIE +I D+ M +
Sbjct: 34 ALARAEAELGLIPEEAAEEINRKASTKYVKLERVKEIEAEI----------HHDI-MAVV 82
Query: 147 AALTDI-IGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEG 205
AL+++ G+ + +H + ND + T L +D+++ + +++L+ L+K A +++
Sbjct: 83 KALSEVCEGDAGEYVHFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKN 142
Query: 206 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GA----CALAGT 260
+ G TH Q A P + +++R RL+ + R+ + GA A
Sbjct: 143 TVCIGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRVCVGQMTGAVGTQAAFGEK 202
Query: 261 GLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW------- 313
G+ I + + E L P+ S + V RD EF+ + IA L ++G E
Sbjct: 203 GIEIQKRV-MEILGLK-PVLIS-NQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTE 259
Query: 314 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 373
+ EEFG GSS MP K+NP E + G ARV+ V P
Sbjct: 260 IGEVEEEFG------KKQVGSSTMPHKRNPITSEQICG-LARVVRSNV--------EPAL 304
Query: 374 YNRDLQEDKEPTFDSVKTIV---------GMLEVSAEFAQNITFNVERIKKALPA--GYL 422
N L ++++ T S + I+ +L++ + + + FN E I++ L G +
Sbjct: 305 LNNPLWDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLI 364
Query: 423 DATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF--DKDVYE 480
A + L + + + +H++V ++ ++ + +E R L V D++V +
Sbjct: 365 MAEAVMIELAKRGMGRQEAHELV---------RQAAMK--AHEEGRHLKEVLLEDEEVMK 413
Query: 481 YLGVE 485
YL E
Sbjct: 414 YLTEE 418
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 58.9 bits (143), Expect = 3e-09
Identities = 64/219 (29%), Positives = 94/219 (42%), Gaps = 16/219 (7%)
Query: 155 EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
E A+ +H + D + T L RDA+D + + RL AL LA ++ + G T L
Sbjct: 97 EAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWL 156
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA-----LAGTGLPIDRFMT 269
Q+A PV L +++ L R RL R R G A L LP+ + +
Sbjct: 157 QQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGGAAGTLASLGEQALPVAQAL- 215
Query: 270 AEALEFTAPMRNSIDAVS---DRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG-FIT 325
A L+ P A+ RD + EF SA ++A L ++ + L E G
Sbjct: 216 AAELQLALP------ALPWHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQTEVGEVFE 269
Query: 326 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 364
P+ + GSS MP K+NP V + R G + TL
Sbjct: 270 PAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLF 308
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 56.7 bits (138), Expect = 1e-08
Identities = 59/203 (29%), Positives = 80/203 (39%), Gaps = 39/203 (19%)
Query: 165 SRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQH 224
S ND T R+ ++ ++ ++++LQ A A + ++ G T LQ A P+ L
Sbjct: 142 STNDAYPTAIRIALLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQ 201
Query: 225 LLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL---PIDRFMTAEAL-EFT---- 276
AY L D RL + LGA A GTGL P + E L E T
Sbjct: 202 EFGAYAVALAEDRKRLYRAAELLREVNLGATA-IGTGLNAPPGYIELVVEKLAEITGLPL 260
Query: 277 APMRNSIDAVSDRD-FVLEFLSANSIIAIHLSR---------------LGEEWVLWASEE 320
P + I+A D FV E A +A+ LS+ L E
Sbjct: 261 VPAEDLIEATQDTGAFV-EVSGALKRLAVKLSKICNDLRLLSSGPRAGLNE--------- 310
Query: 321 FGFITPSDSVSTGSSIMPQKKNP 343
P +V GSSIMP K NP
Sbjct: 311 --INLP--AVQAGSSIMPGKVNP 329
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 56.5 bits (137), Expect = 2e-08
Identities = 74/277 (26%), Positives = 112/277 (40%), Gaps = 37/277 (13%)
Query: 165 SRNDQVLTDFRLWCRDAIDT-IVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQ 223
S ND T + A+ ++ +++ L L A + ++ G THLQ A P+ L
Sbjct: 138 SSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLG 197
Query: 224 HLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-RF--MTAEAL------E 274
Y QLE R++ + +G A GTGL F AE L
Sbjct: 198 QEFSGYAAQLEHALERIEASLPHLYELAIGGTA-VGTGLNAHPEFGEKVAEELAELTGLP 256
Query: 275 F-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEF---GFITPSDSV 330
F TAP N +A++ D ++E A +A+ L ++ + S G I ++
Sbjct: 257 FVTAP--NKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENE 314
Query: 331 STGSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLCKGLPL-AYNRDLQED 381
GSSIMP K NP E + +A+VIG+ + L P+ AYN
Sbjct: 315 P-GSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPVIAYN------ 367
Query: 382 KEPTFDSVKTIVGMLEVSAE-FAQNITFNVERIKKAL 417
SV+ + + A+ I N ERIK+ L
Sbjct: 368 ---FLQSVRLLADAMRSFADHCIVGIEPNEERIKELL 401
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 53.8 bits (129), Expect = 1e-07
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 23/254 (9%)
Query: 103 AKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHT 162
+ G+I I +D ++E + + + DV M + AL++ +H
Sbjct: 40 YEYGIIPRDAFLDIKNAVDSNSVRLERVREIESEIKHDV-MALVEALSEQCSAGKNYVHF 98
Query: 163 ARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL 222
+ ND T L D + I I+ L L+KL + + + G TH Q A P+
Sbjct: 99 GVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITF 158
Query: 223 QHLLLAYVEQLERDAGRLQDCRVRMN----FCPLG-ACALAGTGLPI-DRFMTAEALEFT 276
Y++++ R RL + R P+G AL L I +R M E L
Sbjct: 159 GLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAALGKDALDIQNRVM--EILGIY 216
Query: 277 APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW-------VLWASEEFGFITPSDS 329
+ + ++ + +RD +E+LS + I++ L ++ E + SE F
Sbjct: 217 SEIGST--QIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDE-----E 269
Query: 330 VSTGSSIMPQKKNP 343
GSS MP K NP
Sbjct: 270 SQVGSSSMPSKVNP 283
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 49.3 bits (118), Expect = 3e-06
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 19/190 (10%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
+++ L+ L + + ++ G THLQ A P+ L YV QLE R+ +
Sbjct: 160 ALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHL 219
Query: 248 NFCPLGACALAGTGL----PIDRFMTAEALEFTA----PMRNSIDAVSDRDFVLEFLSAN 299
+G A+ GTGL D + E + T N +A++ D ++E A
Sbjct: 220 YELAIGGTAV-GTGLNTHPGFDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGAL 278
Query: 300 SIIAIHLSRLGEEWVLWAS------EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKS 353
+A L ++ + S E P + GSSIMP K NP E +
Sbjct: 279 KTLAASLMKIANDIRWLGSGPRCGLGELFI--PEN--EPGSSIMPGKVNPTQCEALTMVC 334
Query: 354 ARVIGDLVTL 363
+V+G+ T+
Sbjct: 335 VQVMGNDATI 344
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 46.3 bits (111), Expect = 3e-05
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
+++ L AL A + + ++ G THLQ A P+ L Y QLE R++ R+
Sbjct: 159 ALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRL 218
Query: 248 NFCPLGACALAGTGL 262
LG A+ GTGL
Sbjct: 219 YELALGGTAV-GTGL 232
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 45.1 bits (107), Expect = 6e-05
Identities = 68/278 (24%), Positives = 118/278 (42%), Gaps = 43/278 (15%)
Query: 104 KQGLISDSDKNSILRG-------LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEP 156
K GLI DSD I + +DEIE+ T + D+ + ++++ +GE
Sbjct: 36 KLGLIPDSDCEKICKNAKFDIARIDEIEK----------TTKHDL-IAFLTSVSESLGEE 84
Query: 157 AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 216
++ +H + +D + T L RD++ I+ ++ L A+ K AL+++ ++ G +H
Sbjct: 85 SRFVHYGMTSSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIH 144
Query: 217 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA-----LAGTGLPIDRFMTAE 271
+P+ +L + ++++R L+ M +G + A L ++ + E
Sbjct: 145 GEPITFGLVLAIWYDEIKRHLKALEHT---MEVISVGKISGAMGNFAHAPLELEELVCEE 201
Query: 272 ALEFTAPMRNSIDAVSDRDFVLEFLSANSI-------IAIHLSRLGEEWVLWASEEFGFI 324
AP+ N V RD SA ++ IA+ + L V A E F
Sbjct: 202 LGLKPAPVSNQ---VIQRDRYARLASALALLASSCEKIAVAIRHLQRTEVYEAEEYF--- 255
Query: 325 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 362
GSS MP K+NP E + G RVI T
Sbjct: 256 ---SKGQKGSSAMPHKRNPVLSENITG-LCRVIRSFAT 289
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 45.1 bits (108), Expect = 6e-05
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
+++ L+ L A + ++ G THLQ A P+ L Y QLE R++ +
Sbjct: 163 ALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHL 222
Query: 248 NFCPLGACALAGTGL 262
LG A GTGL
Sbjct: 223 YELALGGTA-VGTGL 236
Score = 31.6 bits (73), Expect = 1.1
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 333 GSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLCKGLPL-AYNRDLQEDKE 383
GSSIMP K NP E + A+V+G+ + L P+ AYN LQ
Sbjct: 317 GSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKPVIAYNF-LQ---- 371
Query: 384 PTFDSVKTIVGMLEVSAEF-AQNITFNVERIKKAL 417
S++ + + A+ I N ERIK+ L
Sbjct: 372 ----SIRLLADAMRSFADHCVVGIEPNRERIKELL 402
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 43.8 bits (103), Expect = 2e-04
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 20/223 (8%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
P ++ ++S ND T + A+ + ++ +I L L + + ++ L+ G TH+
Sbjct: 128 PNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHM 187
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR-FMTAEAL 273
A P+ L A+V QL+ ++ + G A+ GTGL F A A
Sbjct: 188 MDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAV-GTGLNAPHGFAEAIAA 246
Query: 274 EF---------TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS-EEFGF 323
E TAP N A++ + ++ A +A+ L ++ + L S G
Sbjct: 247 ELAALSGLPFVTAP--NKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGL 304
Query: 324 IT---PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
P++ GSSIMP K NP E + + +V+G+ T+
Sbjct: 305 AEVRLPAN--EPGSSIMPGKVNPTQCEALSMLACQVMGNDATI 345
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 40.8 bits (96), Expect = 7e-04
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 333 GSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTF---DSV 389
GSS MP K+NP E + G + + LVT L PL + RDL D+
Sbjct: 58 GSSAMPHKRNPIGSERITGLARVLRSYLVTALENV---PLWHERDLSHSSAERIALPDAF 114
Query: 390 KTIVGMLEVSAEFAQNITFNVERIKKAL--PAGYLDATTLADYLVNKQVPFRTSHDIVGK 447
+ +L +N+ E I++ L G++ + LV K + +H+++ +
Sbjct: 115 LALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIRE 174
Query: 448 AVALCVSKECQLQDLSLDEMR--------SLNPVFD 475
+ L++L + R L+ +FD
Sbjct: 175 KAMEAWKNQKDLRELLEADERFTKQLTKEELDELFD 210
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 40.3 bits (95), Expect = 0.002
Identities = 65/240 (27%), Positives = 94/240 (39%), Gaps = 43/240 (17%)
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALT---DIIGEPAKKLHTARSRNDQVLTDFRL 176
+DEIE + DV I A LT + +G A+ +H + +D + T +
Sbjct: 62 IDEIEA----------VTKHDV---I-AFLTHLAEFVGPDARFVHQGMTSSDVLDTCLNV 107
Query: 177 WCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQ-HLLLAYVEQLER 235
A D ++ + R+ AL K A +++ G +H A+P L Y E R
Sbjct: 108 QLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAE-FAR 166
Query: 236 DAGRLQDCRVRMNFCPL-GACALAGTGLPIDRFM---TAEALEFT-APMRNSIDAVSDRD 290
+ RL R + C + GA GT ID + A+ L P+ V RD
Sbjct: 167 NRERLVAAREEIATCAISGA---VGTFANIDPRVEEHVAKKLGLKPEPVSTQ---VIPRD 220
Query: 291 FVLEFLSANSIIAIHLSRLGEEW-------VLWASEEFGFITPSDSVSTGSSIMPQKKNP 343
F + +IA + RL E VL A E F GSS MP K+NP
Sbjct: 221 RHAMFFATLGVIASSIERLAIEIRHLQRTEVLEAEEFF------SPGQKGSSAMPHKRNP 274
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 40.0 bits (94), Expect = 0.002
Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 13/195 (6%)
Query: 154 GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 213
E A +H + D + T L + A + + + L L L + G+T
Sbjct: 96 EEAAAHVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHTR 155
Query: 214 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL----PIDRFMT 269
+Q A P+ + L ++ L R RL+ R + G A L R
Sbjct: 156 MQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAGTLEKLGGKAAAVRARL 215
Query: 270 AEALEFT-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD 328
A+ L AP S RDF+ +F S++ L + G++ L A I+ S
Sbjct: 216 AKRLGLEDAPQ-----WHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAG-DEISLSG 269
Query: 329 SVSTGSSIMPQKKNP 343
GSS MP K+NP
Sbjct: 270 --GGGSSAMPHKQNP 282
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 38.1 bits (89), Expect = 0.011
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 179 RDAIDTI----VRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL--------QHLL 226
RDA+D I I RL + AL+ + L G+TH Q AQ + Q LL
Sbjct: 109 RDALDLILPKLAAVIDRLA----EFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLL 164
Query: 227 LAYVEQLERDAGRLQDCRVR 246
+ + LER D R R
Sbjct: 165 MD-LRNLER---LRDDLRFR 180
>gnl|CDD|180256 PRK05784, PRK05784, phosphoribosylamine--glycine ligase;
Provisional.
Length = 486
Score = 34.6 bits (80), Expect = 0.13
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 41 SAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKFTESISY----DKALYKHDIMGSK 96
S E + ++ K S + E+ G FEE A EK ISY K +Y+ DI +
Sbjct: 390 SVELEGGQLITKGSRALEIVAIGKDFEE----AYEKLERCISYVSSDTKLIYRTDIGSPE 445
Query: 97 AHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTD 137
+ K ++ K RGL + G +W
Sbjct: 446 YMEYQIEKAEIVRYVYKWREKRGLLGVSADWSPGGGLWEYK 486
>gnl|CDD|214348 CHL00048, rps3, ribosomal protein S3.
Length = 214
Score = 32.5 bits (75), Expect = 0.41
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 404 QNITFNVERIKKALPAGYLDATTLADYLVN---KQVPFR 439
+ + N+ +KK Y + LA+Y+ +V FR
Sbjct: 104 RKLNINITEVKKP----YGEPNILAEYIAGQLENRVSFR 138
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 32.4 bits (74), Expect = 0.62
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 133 MWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFR 175
MWRT E T +P HT RS +V+ DFR
Sbjct: 1 MWRTRWES------GPPTFTRPDPFPYCHTRRSTFLRVMADFR 37
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 31.6 bits (72), Expect = 1.00
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 139 EDVHMNIEAALTDI---IGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVA 195
+V ++ A LT++ +G+ + +H + +D + T L ++D ++ ++ L A
Sbjct: 64 AEVRHDVIAFLTNVNEYVGDAGRYIHLGMTSSDVLDTGLALQLVASLDLLLEELEDLIQA 123
Query: 196 LVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGAC 255
+ A ++ ++ G +H A+P+ L ++ + R+ RL R+R + +G
Sbjct: 124 IRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERL--VRLREDIA-VGQI 180
Query: 256 ALA-GTGLPID---RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGE 311
+ A GT D +T + L P S +S RD E++ +++ L R
Sbjct: 181 SGAVGTYANTDPRVEAITCQKLGLK-PDTASTQVIS-RDRHAEYVQTLALVGASLERFAT 238
Query: 312 EW-------VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVI 357
E VL E F GSS MP K+NP E + G ARV+
Sbjct: 239 EIRNLQRTDVLEVEEYFA------KGQKGSSAMPHKRNPIRSERLSGL-ARVL 284
>gnl|CDD|223820 COG0749, PolA, DNA polymerase I - 3'-5' exonuclease and polymerase
domains [DNA replication, recombination, and repair].
Length = 593
Score = 30.7 bits (70), Expect = 2.5
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 27/136 (19%)
Query: 72 DAVEKFTESISYD-KALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAG 130
+ ++K +++ YD K L I A +MLA L + + LD++ A
Sbjct: 77 EGIKKVGQNLKYDYKVLANLGIEPGVAFDTMLASYLLNPGAGAH----NLDDL-----AK 127
Query: 131 KFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQ 190
+++ DI G+ K+L A + ++ DA T+
Sbjct: 128 RYLGLETITF---------EDIAGKGKKQLTFADVKLEKA---TEYAAEDADATL----- 170
Query: 191 RLQVALVKLALKNEGL 206
RL+ L LK L
Sbjct: 171 RLESILEPELLKTPVL 186
>gnl|CDD|221741 pfam12733, Cadherin-like, Cadherin-like beta sandwich domain. This
domain is found in several bacterial, metazoan and
chlorophyte algal proteins. A profile-profile comparison
recovered the cadherin domain and a comparison of the
predicted structure of this domain with the crystal
structure of the cadherin showed a congruent seven
stranded secondary structure. The domain is widespread
in bacteria and seen in the firmicutes, actinobacteria,
certain proteobacteria, bacteroides and chlamydiae with
an expansion in Clostridium. In contrast, it is limited
in its distribution in eukaryotes suggesting that it was
derived through lateral transfer from bacteria. In
prokaryotes, this domain is widely fused to other
domains such as FNIII (Fibronectin Type III), TIG, SLH
(S-layer homology), discoidin, cell-wall-binding repeat
domain and alpha-amylase-like glycohydrolases. These
associations are suggestive of a carbohydrate-binding
function for this cadherin-like domain. In animal
proteins it is associated with an ATP-grasp domain.
Length = 92
Score = 28.5 bits (64), Expect = 2.7
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 459 LQDLSLDEMRSLNPVFDKDVYEY 481
L LSL +L+P F D Y
Sbjct: 1 LSSLSLSGG-TLSPAFSPDTTSY 22
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.0 bits (68), Expect = 3.8
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 102 LAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLH 161
++ +++ + +L ++E+ER+IE R R+ LT+ E ++L
Sbjct: 320 AEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRD--------KLTEEYAELKEELE 367
Query: 162 TARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 193
R+ ++V +F RD + +++L+
Sbjct: 368 DLRAELEEVDKEFAET-RDELKDYREKLEKLK 398
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 29.5 bits (67), Expect = 5.2
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 31/126 (24%)
Query: 410 VERIKKA-LPAGYL-----DATTLADYLVN----KQVPFRTSHDIVGKAVALCVS---KE 456
VE +++A LPAG + + LV V F S VG+ +A +
Sbjct: 182 VEILEEAGLPAGVFNLVMGSGSEVGQALVEHPDVDAVSFTGSTA-VGRRIAAAAAARGAR 240
Query: 457 CQLQDLSLDEMRSLNP-VFDKDVYEYLGVENAIRKFSSFGSTGSAC-------VTEQLH- 507
QL EM NP V D L VE A++ +F STG C VTE +H
Sbjct: 241 VQL------EMGGKNPLVVLDDADLDLAVECAVQ--GAFFSTGQRCTASSRLIVTEGIHD 292
Query: 508 SWVAKL 513
+V L
Sbjct: 293 RFVEAL 298
>gnl|CDD|233298 TIGR01170, rplA_mito, ribosomal protein L1, mitochondrial. This
model represents the mitochondrial homolog of bacterial
ribosomal protein L1. Unlike chloroplast L1, this form
was not sufficiently similar to bacterial forms to
include in a single bacterial/organellar L1 model
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 141
Score = 28.2 bits (63), Expect = 6.1
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 24 QAATHSLRSSLSFNYTYSAEPKHKTVLCKMSASKEVKLWGGRFEESVTDAVEKF-TESIS 82
+ S++ SF + + EPK S +E + G + D ++K I
Sbjct: 33 ELGKESVQGMFSFPHPFGKEPKIAVFTKGASEVEEAREAGADYVGG-DDLIKKIEDGEIK 91
Query: 83 -YDKALYKHDIMGS-KAHASMLAKQGLISDSDKNSILRGLDEI 123
+D + DI+ +L +GL+ + ++ L +
Sbjct: 92 PFDYLIAHPDIVPELAQLRRLLGPKGLMPSPKRGTVGDNLLSM 134
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase,
central domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 119
Score = 27.4 bits (62), Expect = 8.3
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 389 VKTIVGMLEVSAEFAQNITFNVER-------IKKALPAGYLDATTLADYLVN 433
V T+V VS + +++ R IK LP LD T YL+N
Sbjct: 69 VDTVV----VSTQHDPDVSLEELREDIIEEVIKPVLPEELLDDDT--KYLIN 114
>gnl|CDD|236386 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated.
Length = 776
Score = 28.7 bits (65), Expect = 8.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 13/33 (39%)
Query: 456 ECQLQDLSL----------DEMRSLNPVFDKDV 478
ECQLQDL++ +E R VFDKD+
Sbjct: 106 ECQLQDLAVGYGRSTSRYTEEKRV---VFDKDL 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.383
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,980,544
Number of extensions: 2551366
Number of successful extensions: 2148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2092
Number of HSP's successfully gapped: 64
Length of query: 520
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 419
Effective length of database: 6,457,848
Effective search space: 2705838312
Effective search space used: 2705838312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)