RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010020
(520 letters)
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 773 bits (1998), Expect = 0.0
Identities = 199/456 (43%), Positives = 283/456 (62%), Gaps = 1/456 (0%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
LWGGRF ++ ++F +S+ +D L + DI+GS A + L G+++ ++ +
Sbjct: 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEA 61
Query: 120 LDEIERQIEAGKF-MWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWC 178
L+ + + A + +D ED+H +E L D +G+ KKLHT RSRNDQV TD +LWC
Sbjct: 62 LNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWC 121
Query: 179 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 238
+D + ++ + ++LQ ALV+ A N+ ++PGYTHLQRAQPV H LAYVE L RD
Sbjct: 122 KDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDES 181
Query: 239 RLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSA 298
RLQD R++ PLG ALAGT IDR A L F + RNS+D+VSDRD VLE LSA
Sbjct: 182 RLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSA 241
Query: 299 NSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIG 358
+I +HLSR E+ + + + E GF+ SD V++GSS+MPQKKNPD +EL+RGK RV G
Sbjct: 242 AAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQG 301
Query: 359 DLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP 418
L ++ KGLPLAYN+D+QEDKE FD++ T + L ++A I R ++A
Sbjct: 302 ALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQ 361
Query: 419 AGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDV 478
GY +AT LADYLV K VPFR +H IVG+AV + + L+DL L E++ + V D+DV
Sbjct: 362 QGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDV 421
Query: 479 YEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLG 514
Y L +++ + K ++ G V + + A+LG
Sbjct: 422 YPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG 457
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 772 bits (1997), Expect = 0.0
Identities = 230/459 (50%), Positives = 311/459 (67%), Gaps = 2/459 (0%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
+ WGGRF E +F S+++D+AL++ D+ ++ HA ML GL+S + +IL+G
Sbjct: 4 RTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKG 63
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
LD IE +IEAG F WR + EDVHMN+EA LT+++G P KLHTARSRNDQV TD RL+ R
Sbjct: 64 LDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLR 123
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEG--LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDA 237
AID ++ + L+ LV+ A K+ ++PGYTHLQRAQPVLL H LAY E L+RDA
Sbjct: 124 GAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDA 183
Query: 238 GRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLS 297
GRL+D + R+N PLGA ALAGTG PIDR TA L F APMRNS+DAV+ RDF LE LS
Sbjct: 184 GRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLS 243
Query: 298 ANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVI 357
A +I +HLSR+ EE +L+++EEFGF+ D+ +TGSSIMPQKKNPD +EL+R K+ RV+
Sbjct: 244 ALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVL 303
Query: 358 GDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKAL 417
G V L + KGLPLAYN+DLQEDKEP D++ T L + A + + ER+ +A
Sbjct: 304 GAFVGLSAVVKGLPLAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAA 363
Query: 418 PAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKD 477
GY AT LADYL K +PFR +H +VG+ V V + L+DL+L+E+++ +P+F +D
Sbjct: 364 EGGYTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAED 423
Query: 478 VYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGIN 516
L +E AI + S+G T V E+L ++G++
Sbjct: 424 ALPLLRLETAIHRRRSYGGTAPEAVRERLEEAKKEVGLD 462
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 757 bits (1956), Expect = 0.0
Identities = 197/466 (42%), Positives = 294/466 (63%), Gaps = 1/466 (0%)
Query: 53 MSASKEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSD 112
S ++ KLWGGRF S +EK SI+YD+ L + DI GS A+A L K G+++ ++
Sbjct: 2 ASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTE 61
Query: 113 KNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLT 172
IL GL++I + G F+ + ED+H E L ++IG+ A KLHT RSRNDQV+T
Sbjct: 62 LEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVT 121
Query: 173 DFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQ 232
D +L+ ++++ I + +L LV+ A +I+PGYTHLQ+AQP+ LL++
Sbjct: 122 DLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVA 181
Query: 233 LERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFV 292
L RD+ RL + + R+N PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV
Sbjct: 182 LTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFV 241
Query: 293 LEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGK 352
+EFLS +++ IHLS++ E+ +++++ EFGF+T SD+ STG+S+MPQKKNPD +EL+R K
Sbjct: 242 VEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSK 301
Query: 353 SARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 412
+ RV G L ++L + KGLP YN+DLQEDKE FD V T+ +L+V+ + + E
Sbjct: 302 AGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKEN 361
Query: 413 IKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNP 472
++KAL L AT LA YLV K VPFR +H GKAV L +K + LSL++++S++P
Sbjct: 362 MEKALTPEML-ATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISP 420
Query: 473 VFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGINRS 518
F DV + N++ ++++ G T + VT Q+ + +
Sbjct: 421 QFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE 466
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 98.5 bits (246), Expect = 3e-22
Identities = 81/353 (22%), Positives = 135/353 (38%), Gaps = 34/353 (9%)
Query: 147 AALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGL 206
L+ GE K LH + D + T L RD + I R I+ ++ AL LA +
Sbjct: 85 EQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDT 144
Query: 207 IVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGT----- 260
+ G THLQ A PV + ++ +R A RL++ R+ GA +GT
Sbjct: 145 PMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGA---SGTLASLG 201
Query: 261 --GLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 318
GL + R + A L P S RD V E + ++++ L +L + + +
Sbjct: 202 TRGLDVQREL-ARELNLGVPSITW---HSARDAVAETVQFLALVSGSLGKLAMDISIMMT 257
Query: 319 EEFGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 377
E G + P SS MPQK+NP EL+ + V ++L + + R
Sbjct: 258 TELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLD---AMIHDFERA 314
Query: 378 L---QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLV 432
+ + G+L + + +R+++ L G + A + L
Sbjct: 315 TGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALA 374
Query: 433 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 485
+ +HDIV V + L ++ +V + LG E
Sbjct: 375 PH-TGRKEAHDIVYLGCRRAVEDKTGLFEVLRT---------MPEVAKPLGEE 417
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 96.2 bits (240), Expect = 2e-21
Identities = 74/363 (20%), Positives = 141/363 (38%), Gaps = 27/363 (7%)
Query: 144 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 203
+ A + D + A+ +H + D + T L CRDA+ + +Q+ + A
Sbjct: 88 QLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTY 147
Query: 204 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALA 258
++ G T LQ+A P+ L H L + +RD R+ + R+ L GA +L
Sbjct: 148 RHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQ 207
Query: 259 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 318
G + A+ L+ +RD ++E S II ++ ++ +W L
Sbjct: 208 DQGSIVVEAY-AKQLKLGQTACTW---HGERDRIVEIASVLGIITGNVGKMARDWSLMMQ 263
Query: 319 EEFGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 377
E + P+ GSS MP K+NP V + RV + ++ + + R
Sbjct: 264 TEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQ---SMVQEHERS 320
Query: 378 L---QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLV 432
L + + + G LE + + + + N E + + + G + A + L
Sbjct: 321 LGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALA 380
Query: 433 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDK-------DVYEYLGVE 485
+ +H +V A V+++ L+D+ + ++ + F+ YLG
Sbjct: 381 -PHMGRLNAHHVVEAACKTAVAEQKHLKDI-ISQVDEVKQYFNPSQLDEIFKPESYLGNI 438
Query: 486 NAI 488
Sbjct: 439 QDQ 441
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 93.5 bits (233), Expect = 1e-20
Identities = 90/363 (24%), Positives = 151/363 (41%), Gaps = 27/363 (7%)
Query: 144 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 203
+ + + E + +H + D + T L RDA+D I + +L L + ALK+
Sbjct: 84 ALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKH 143
Query: 204 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALA 258
+ G T LQ A PV L L + L R RLQ+ R R+ GA AL
Sbjct: 144 ADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALG 203
Query: 259 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 318
+P+ + AE L+ T P + + RD ++EF S ++A L + G + L
Sbjct: 204 SKAMPVAEAL-AEQLKLTLPEQPW---HTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQ 259
Query: 319 EEFGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 377
E G + PS GSS MP K+NP ++ G + RV G L TL +P + R
Sbjct: 260 TEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFA---AMPQEHERS 316
Query: 378 L---QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLV 432
L + E D + G L + A+ + + R+++ L G + A ++ L
Sbjct: 317 LGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLA 376
Query: 433 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDK-------DVYEYLGVE 485
+ + +H ++ + V+++ L+ + L + ++ D YLG
Sbjct: 377 QR-LGRDRAHHLLEQCCQRAVAEQRHLRAV-LGDEPQVSAELSGEELDRLLDPAHYLGQA 434
Query: 486 NAI 488
Sbjct: 435 RVW 437
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 91.2 bits (227), Expect = 3e-20
Identities = 59/273 (21%), Positives = 99/273 (36%), Gaps = 13/273 (4%)
Query: 97 AHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEP 156
A A A+ + +D + +I+ GL E + A + D V I + G+
Sbjct: 39 ALAQAEAEASIFADDEAEAIVSGLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQA 98
Query: 157 AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 216
A K+H + D + T L + A + I + L L LA ++ + GYT +Q
Sbjct: 99 ADKVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQA 158
Query: 217 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALAGTGLPIDRFMTAE 271
A + + ++ LER RL+ GA L + + A+
Sbjct: 159 AIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADL-AK 217
Query: 272 ALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVS 331
L + RD + EF + S++ L + G++ L A
Sbjct: 218 RLGLADR----PQWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIGSEIRLSG---G 270
Query: 332 TGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 364
GSS MP K+NP E + + + L
Sbjct: 271 GGSSAMPHKQNPVNAETLVTLARFNAVQISALH 303
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 90.4 bits (225), Expect = 1e-19
Identities = 80/407 (19%), Positives = 157/407 (38%), Gaps = 47/407 (11%)
Query: 97 AHASMLAKQGLISDSDKNSILRG-------LDEIERQIEAGKFMWRTDREDVHMNIEAAL 149
A + G+I I +IE + DV + +
Sbjct: 28 AVTRAYEELGMIPKGVTERIRNNAKIDVELFKKIEEKT----------NHDV-VAFVEGI 76
Query: 150 TDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVP 209
+IGE ++ H + +D + T L +A ++ S++ L ++A + +
Sbjct: 77 GSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTI 136
Query: 210 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDRFM 268
G TH A+P +L + +++R+ RL+ +++ + GA G + +
Sbjct: 137 GRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGA---VGNYANVPPEV 193
Query: 269 TAEALE----FTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFI 324
+AL P+ + RD +LS +I+A + R+ E E +
Sbjct: 194 EEKALSYLGLKPEPVSTQVVP---RDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEV 250
Query: 325 T-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKE 383
P GSS MP KKNP E + G S + + L + + L + RD+
Sbjct: 251 EEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSL---ENIALWHERDISHSSV 307
Query: 384 PTF---DSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPF 438
+ D+ +T+ M+ + +N+ N ER+KK + G + + + L+ K +
Sbjct: 308 ERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTR 367
Query: 439 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 485
+ ++DIV + + E + L+ D++V + + E
Sbjct: 368 KEAYDIVQRNALKTWNSEKHFLEYLLE---------DEEVKKLVTKE 405
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 87.4 bits (217), Expect = 1e-18
Identities = 85/410 (20%), Positives = 150/410 (36%), Gaps = 51/410 (12%)
Query: 97 AHASMLAKQGLISDSDKNSILRG-------LDEIERQIEAGKFMWRTDREDVHMNIEAAL 149
A+ G I D I + EIE++ R DV A
Sbjct: 38 LACEAWAELGDIPKEDVKKIREHASFDIDRIYEIEKET----------RHDV-----VAF 82
Query: 150 TDII------GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 203
T + GE K +H + D V T + A + I++ ++ L A ++
Sbjct: 83 TRAVSETPALGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEH 142
Query: 204 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC-ALAGTG 261
+ I+ G TH A+P L + E+++R+ R + + L GA A
Sbjct: 143 KYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVGTYANID 202
Query: 262 LPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEF 321
+++++ E L A RD ++S ++IA + ++ E E
Sbjct: 203 PFVEKYV-CENLGLEAA--PISTQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSET 259
Query: 322 GFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQE 380
+ GSS MP K+NP E + G ARVI + + +PL + RD+
Sbjct: 260 REVEEAFAKGQKGSSAMPHKRNPIGSENMTG-LARVIRGYMMTAY--ENVPLWHERDISH 316
Query: 381 DK-EPTF--DSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQ 435
E D+ + ML +N+T E +K+ + G + + + L++K
Sbjct: 317 SSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKG 376
Query: 436 VPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 485
+ ++DIV + Q ++L D+ + L E
Sbjct: 377 MVREEAYDIVQPKAMEAWETQVQFKELVEA---------DERITSKLTQE 417
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 79.6 bits (197), Expect = 3e-16
Identities = 69/395 (17%), Positives = 131/395 (33%), Gaps = 65/395 (16%)
Query: 97 AHASMLAKQGLISDSDKNSILRG------LDEIERQIEAGKFMWRTDREDVHMNIEAALT 150
A L + G+ + + + +ER+ D+ +L
Sbjct: 34 ALVCALEELGVAERGCCEKVNKASVSADEVYRLERET----------GHDI-----LSLV 78
Query: 151 DIIGEP--AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIV 208
++ + + +H + ND + T + L R A+ + + + L +A K + L +
Sbjct: 79 LLLEQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEM 138
Query: 209 PGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALAGTGLP 263
G TH Q A+P+ L Y +L +L + GA + GL
Sbjct: 139 VGRTHGQWAEPITLGFKFANYYYELYIACRQLALAE-EFIRAKIGGAVGTMASWGELGLE 197
Query: 264 IDRFMTAEALEFTAPMRNSIDAVS----DRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 319
+ R AE L ++ R+ SA +++A RL E +
Sbjct: 198 VRR-RVAERLGLPHH------VITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRP 250
Query: 320 EF-----GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAY 374
E G GSS MP K NP E + + V + L +
Sbjct: 251 EIGEVVEGGG--------GSSAMPHKANPTASERIVSLARYVRALTHVAFE---NVALWH 299
Query: 375 NRDLQEDKE-----PTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTL 427
RDL P +++ + +L + +N+ + ERI + L Y+
Sbjct: 300 ERDLTNSANERVWIP--EALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFH 357
Query: 428 ADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDL 462
+ ++ + ++ + AL + +
Sbjct: 358 MNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVER 392
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 78.5 bits (194), Expect = 8e-16
Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 30/346 (8%)
Query: 152 IIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGY 211
E K H + +D + + L RD++ +++ ++ L +L+ A + + +I G
Sbjct: 80 FTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGR 139
Query: 212 THLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDRFM-- 268
+H A+P+ L + +R L+D + GA G +
Sbjct: 140 SHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGA---VGNYCILTTEDEK 196
Query: 269 -TAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT-P 326
A+ L ++ V RD + + +S + +IA + RL E + +
Sbjct: 197 KAADILGLPVEEVST--QVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEG 254
Query: 327 SDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKE--- 383
GSS MP KKNP E + G + + + L + L + RD+
Sbjct: 255 FSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIAL---ENCVLWHERDISHSSAERF 311
Query: 384 --PTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFR 439
P D+ +V L N+ + I+ + + YL + L + N
Sbjct: 312 YLP--DNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMRE 369
Query: 440 TSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 485
+ IV + E + L V + L +
Sbjct: 370 DCYKIVQQVAFDLKQGE--------SFSKKLQKVMHDEHNIILDIP 407
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.0 bits (176), Expect = 2e-13
Identities = 96/574 (16%), Positives = 179/574 (31%), Gaps = 168/574 (29%)
Query: 4 LVSASSRTQLLFSPAAVL---FNQAATHSLRSSLSFNYTYSAEPKHKTVLCKMSASKEVK 60
LV + F A+ L F L + + EP + +
Sbjct: 21 LVPTA-----SFFIASQLQEQF----NKILPEP-TEGFAADDEP-----------TTPAE 59
Query: 61 LWGGRFEESVTDAVEKFTESISYDKAL------YKHDIM-GSKAHASMLAKQGLISDSDK 113
L G +F V+ VE ++ +D+ L +++ + G+ HA LA + L+ ++D
Sbjct: 60 LVG-KFLGYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGNDIHA--LAAK-LLQENDT 114
Query: 114 NSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTA---RSRNDQV 170
++++ + I+ I A R + +AL +GE +L + D
Sbjct: 115 -TLVKTKELIKNYITARIMAKRPFDK----KSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 171 LTDFR-LWC--RDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTH-LQRAQPVLLQHL 225
+ R L+ + D I S + L L++ L E + +T L
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLS-ELIRTTLDAEKV----FTQGLN---------- 214
Query: 226 LLAYVEQLER--DAGRLQDCRVRMNFCPL-GACALAGTGLPIDRFM-TAEALEFT-APMR 280
+L ++E D L + CPL G LA ++ TA+ L FT +R
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPIS---CPLIGVIQLA-------HYVVTAKLLGFTPGELR 264
Query: 281 NSIDAVSDRDFVLEFLSANSIIA--------IHLSRLGEEWVLW----ASEEFGFITPSD 328
+ + + ++A IA R + + E + +
Sbjct: 265 SYLKGATGH--SQGLVTA-VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 329 SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA-------YN------ 375
S+ S+ + P PM + + + D V LP N
Sbjct: 322 SILE-DSLENNEGVPSPMLSISNLTQEQVQDYVN--KTNSHLPAGKQVEISLVNGAKNLV 378
Query: 376 -----RDLQEDKEPTFDSVKTIVGMLEVSAEFAQN-ITFNVERIKKALPAGYLDATTLAD 429
+ L + + + + Q+ I F+ ER K +L
Sbjct: 379 VSGPPQSLY--------GLNLTLRKAKAPSGLDQSRIPFS-ER-KLKFSNRFLPVA---- 424
Query: 430 YLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMR----SLN-PVFD----KDVYE 480
PF + L + + +DL + + + PV+D D
Sbjct: 425 ------SPFHSHL--------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD--- 467
Query: 481 YLGVENAIRKFSSFGSTGSAC---VTEQLHSWVA 511
+R S + + + W
Sbjct: 468 -------LRVLSG-SISERIVDCIIRLPVK-WET 492
Score = 55.1 bits (132), Expect = 5e-08
Identities = 76/493 (15%), Positives = 146/493 (29%), Gaps = 173/493 (35%)
Query: 6 SASSRTQLLFSPAAVL--FNQAA-----THSLRSSLSF--------------NYTYSA-- 42
Q+L L F H+L + L NY +A
Sbjct: 76 KVGQFDQVL---NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-ITARI 131
Query: 43 ------EPKHKTVLCKMSASKEVKLW---GGR------FEE-----------------SV 70
+ K + L + +L GG+ FEE
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 71 TDAVEKFTESISYDKALYKH--DIMG---------------------------SKAHASM 101
+ + + + + ++ +I+ AH +
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 102 LAKQGLISDSDKNSILRGLDEIERQIEAGKFM-----WRTDREDVHMNIEAALTDI--IG 154
AK + + S L+G + + + W E +++ A+T + IG
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW----ESFFVSVRKAITVLFFIG 307
Query: 155 EPAKKLHTARSRNDQVLTDFR----------LWCRD-AIDTIVRSIQRLQVAL-----VK 198
+ + S +L D L + + + + + L V+
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 199 LALKN--EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRV----R-----M 247
++L N + L+V G P L L L + + + +G Q R+ R
Sbjct: 368 ISLVNGAKNLVVSGP-------PQSLYGLNLT-LRKAKAPSGLDQ-SRIPFSERKLKFSN 418
Query: 248 NFCPLGA---CA-LAGTGLPIDRFMTAEALEFTA-----PMRNSIDAVSD-RDF---VLE 294
F P+ + L I++ + + F A P+ ++ D SD R + E
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVLSGSISE 477
Query: 295 FLSANSII--AIH---LSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELV 349
+ + II + ++ +L +FG P + +G ++ +
Sbjct: 478 RI-VDCIIRLPVKWETTTQFKATHIL----DFG---PGGA--SGLGVLTHR-------NK 520
Query: 350 RGKSARVI--GDL 360
G RVI G L
Sbjct: 521 DGTGVRVIVAGTL 533
Score = 50.0 bits (119), Expect = 2e-06
Identities = 54/324 (16%), Positives = 101/324 (31%), Gaps = 111/324 (34%)
Query: 16 SPAA-VLFNQAATHSLRSSLSFNYT--YSAEPKHKTVLCKMSASKEVKLWGGRFEESVTD 72
S AA ++N+A H + + F+ P + T+ +GG + + +
Sbjct: 1639 SKAAQDVWNRADNH-FKDTYGFSILDIVINNPVNLTIH-----------FGGEKGKRIRE 1686
Query: 73 AVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKF 132
Y +++ + G I + ++E + +
Sbjct: 1687 N---------YSAMIFETIVDGKLKT---------------EKIFKEINE-----HSTSY 1717
Query: 133 MWRTDREDVH---------MNIEAALTDIIGE----PAKKL---H-----TARSRNDQVL 171
+R+++ + +E A + + PA H A + V+
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 172 TDFRLWCRDAIDTIVRSIQR---LQVALVK--LALKNEGL--IVPGYTHLQRAQPVLLQH 224
++ +V R +QVA+ + L N G+ I PG R Q
Sbjct: 1778 -SIE----SLVE-VVF--YRGMTMQVAVPRDELGRSNYGMIAINPG-----RVAASFSQE 1824
Query: 225 LLLAYVEQLERDAGRLQDCRVRMNF-CPLGACALAGTGLPIDRFMTAEALEFTAPMRNSI 283
L VE++ + G L + +N+ AG AL
Sbjct: 1825 ALQYVVERVGKRTGWL--VEI-VNYNVENQQYVAAGD---------LRAL---------- 1862
Query: 284 DAVSDRDFVLEFLSANSIIAIHLS 307
D V++ VL F+ I I L
Sbjct: 1863 DTVTN---VLNFIKLQKIDIIELQ 1883
Score = 48.9 bits (116), Expect = 4e-06
Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 79/263 (30%)
Query: 283 IDAVSDRDFVLEFLSANSI-IAIHLSRLGEEW----VLWASEEFGFITPSDSVSTGSSIM 337
+DA S R LS S+ + + + L E+F I P + +
Sbjct: 1 MDAYSTRPLT---LSHGSLEHVLLVPT--ASFFIASQLQ--EQFNKILPEPTEGFAADDE 53
Query: 338 PQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSV-KTIVGML 396
P P ELV + +G V+ ++ K FD V +
Sbjct: 54 PT----TPAELV----GKFLG-YVS-------------SLVEPSKVGQFDQVLNLCLTEF 91
Query: 397 E-----------VSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVP---FRTSH 442
E ++A+ Q + + K+ + Y+ A +A +K+ FR
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAVG 150
Query: 443 DIVGKA--VALC----VSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGS 496
+ G A VA+ + + +E+R L + Y L V + I+ + S
Sbjct: 151 E--GNAQLVAIFGGQGNTDDY------FEELRDL---Y--QTYHVL-VGDLIKFSAETLS 196
Query: 497 TGSACVTE---------QLHSWV 510
+ + W+
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWL 219
Score = 45.0 bits (106), Expect = 6e-05
Identities = 56/347 (16%), Positives = 103/347 (29%), Gaps = 119/347 (34%)
Query: 218 QPVLLQH-----------LLLAYVEQLERDAGRLQDCRVRMNFC---PLGACALAGTGLP 263
+P+ L H QL ++ F P A P
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQL-QE-----------QFNKILPEPTEGFAADDEP 54
Query: 264 ID------RFMTAEALEFTAPMRNSIDAVSDRDFVLE---------FLSANSIIAIH--L 306
+F L + + + V D VL +L N IH
Sbjct: 55 TTPAELVGKF-----LGYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGND---IHALA 105
Query: 307 SRLGEEWVLWASEEFGFITPS--DSVSTGSSIMPQKKNPDPMELVRGKSARVI----GDL 360
++L +E + I + + +K N V +A+++ G
Sbjct: 106 AKLLQENDTTLVKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-- 162
Query: 361 VTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVG-MLEVSAEFAQNITFNVERIKKALPA 419
+G Y +L++ + + +VG +++ SAE + +K
Sbjct: 163 -------QGNTDDYFEELRD----LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 420 GY-----LDATTLA---DYLVNKQVPFRTSHDIVGKAVALC---VSKECQLQDLSLDEMR 468
G L+ + DYL++ +P S ++G + L V+ +L + E+R
Sbjct: 212 GLNILEWLENPSNTPDKDYLLS--IPI--SCPLIG-VIQLAHYVVT--AKLLGFTPGELR 264
Query: 469 SLNPVFDKDVYEYLGVENAIRKFSSFGSTG------SACVTEQLHSW 509
S G+TG +A + SW
Sbjct: 265 S----------------------YLKGATGHSQGLVTAVAIAETDSW 289
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 65.4 bits (160), Expect = 2e-11
Identities = 63/339 (18%), Positives = 103/339 (30%), Gaps = 87/339 (25%)
Query: 121 DEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRD 180
E E+++ R DV M + A +H + + R+
Sbjct: 100 AEEEKRL----------RHDV-MAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRN 148
Query: 181 AIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRL 240
A+D ++ + R+ L A + L G+TH Q AQ + +++ L D L
Sbjct: 149 ALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNL 208
Query: 241 QDCRVRMNFCPL-GACALAGTGLPIDRF-------------MTAEALEFTAPMRNSIDAV 286
+ R + F + G GT + M E F +
Sbjct: 209 KRVRDDLRFRGVKGT---TGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTY 265
Query: 287 SDRDFVLEFLSANSIIA---------I-HLSRLGEEWVLWASEEFGFITPSDSVSTGSSI 336
+ R +E LS + + I L+ L E E F GSS
Sbjct: 266 T-RKVDIEVLSVLASLGASVHKICTDIRLLANLKE-----MEEPFE------KQQIGSSA 313
Query: 337 MPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN-RDLQEDKEPTFDSVKTIVGM 395
MP K+NP E + ++ ++ L + + R L DS
Sbjct: 314 MPYKRNPMRSERCCSLARHLMTLVMDPLQT---ASVQWFERTL-------DDSA------ 357
Query: 396 LEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNK 434
RI L +A AD ++N
Sbjct: 358 --------------NRRI--CLA----EAFLTADTILNT 376
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 64.1 bits (157), Expect = 4e-11
Identities = 69/291 (23%), Positives = 108/291 (37%), Gaps = 66/291 (22%)
Query: 165 SRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQH 224
S ND T FR+ ++ +V +I +L+ + A++ + ++ G T LQ A P+ L
Sbjct: 143 STNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQ 202
Query: 225 LLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL---PIDRFMTAEAL-EFT---- 276
A+ L+ + +Q + LGA A+ GTGL + + L E T
Sbjct: 203 EFRAFSILLKEEVKNIQRTAELLLEVNLGATAI-GTGLNTPKEYSPLAVKKLAEVTGFPC 261
Query: 277 --APMRNSIDAVSDRDFVLEFLSANSIIAIHLSR---------------LGEEWVLWASE 319
A + I+A SD + A +A+ +S+ L E
Sbjct: 262 VPAE--DLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNE-------- 311
Query: 320 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIG-DL-VTL------LTLCKGLP 371
P + GSSIMP K NP E+V +VIG D VT+ L L P
Sbjct: 312 ---INLP--ELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEP 366
Query: 372 L-AYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQN----ITFNVERIKKAL 417
+ F+SV + + IT N E + +
Sbjct: 367 VIGQA---------MFESVHI---LTNACYNLLEKCINGITANKEVCEGYV 405
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 64.1 bits (157), Expect = 4e-11
Identities = 72/289 (24%), Positives = 100/289 (34%), Gaps = 62/289 (21%)
Query: 165 SRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQH 224
S ND T RL + + + ++ RL A + +I G T LQ A P+ L
Sbjct: 160 STNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQ 219
Query: 225 LLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PID-RFMTAEAL-EFT---- 276
A+ L D RL++ LG A+ GT + L + +
Sbjct: 220 EFEAFAATLREDTARLEEVAALFREVNLGGTAI-GTRINASHAYAEQAIVELSQISGIEL 278
Query: 277 APMRNSIDAVSDRDFVLEFLSANSIIAIHLSR---------------LGEEWVLWASEEF 321
N ++A D + F IA+ LS+ LGE
Sbjct: 279 KATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE---------- 328
Query: 322 GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIG-DL-VTL------LTLCKGLPL- 372
P +V GSSIMP K NP E V +VIG DL VT+ L L PL
Sbjct: 329 -IRLP--AVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLI 385
Query: 373 AYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQN----ITFNVERIKKAL 417
YN S++ + A+ I NVER +
Sbjct: 386 VYN---------ILSSMRL---LGRAMTNLAERCVDGIEANVERCRAGA 422
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 63.3 bits (155), Expect = 8e-11
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 41/223 (18%)
Query: 165 SRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQH 224
S ND T + ++ ++ + + +Q +K A + G+I G THLQ A P+LL
Sbjct: 140 STNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQ 199
Query: 225 LLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL---PIDRFMTAEAL-EFT---- 276
AY + RD R+ + R + +GA A+ GTGL P + E L +F+
Sbjct: 200 EFEAYARVIARDIERIANTRNNLYDINMGATAV-GTGLNADPEYISIVTEHLAKFSGHPL 258
Query: 277 --APMRNSIDAVSDRDFVLEFLSANSIIAIHLSR---------------LGEEWVLWASE 319
A + +DA + D E SA + I++S+ L E
Sbjct: 259 RSAQ--HLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSE-------- 308
Query: 320 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 362
+ P + GSSIMP K NP E++ + +V G+ +T
Sbjct: 309 ---IVLP--ARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLT 346
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 62.3 bits (152), Expect = 2e-10
Identities = 60/336 (17%), Positives = 107/336 (31%), Gaps = 81/336 (24%)
Query: 121 DEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRD 180
ER++ + DV M A + A +H + + RD
Sbjct: 74 RSEERKL----------KHDV-MAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRD 122
Query: 181 AIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRL 240
+ID I++ + L +LKN+ ++ G TH Q A V + + + ++L L
Sbjct: 123 SIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSL 182
Query: 241 QDCRVRMNFCPL-GACALAGTGLPIDRF-------------MTAEALEFTAPMRNSIDAV 286
+ R +M F + GA GT + + F+ + +
Sbjct: 183 SEFRDKMRFRGIKGA---TGTQDSFLTLFAGDESKVEALDELVTKKANFS-----NRFLI 234
Query: 287 S----DRDFVLEFLSANSIIAIHLSRLGEEWVLWAS----EEFGFITPSDSVSTGSSIMP 338
+ R + + + S++ ++ + + + E F + GSS MP
Sbjct: 235 TGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEP-F----EKDQIGSSAMP 289
Query: 339 QKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEV 398
KKNP E S ++I LT+ R L DS
Sbjct: 290 YKKNPMKSERCCALSRKLINAPQEALTILA--DQGLERTL-------DDSA--------- 331
Query: 399 SAEFAQNITFNVERIKKALPAGYLDATTLADYLVNK 434
R+ +P D A+ L+
Sbjct: 332 -----------GRRM--LIP----DVLLTAEALLTT 350
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 61.9 bits (150), Expect = 2e-10
Identities = 54/275 (19%), Positives = 99/275 (36%), Gaps = 32/275 (11%)
Query: 105 QGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKK----- 159
LIS+ +++ + + E E+Q DV +E L D E +
Sbjct: 71 SDLISNFNESEAEK-IKEFEKQT----------NHDV-KAVEYYLQDKFQENEQLKSCVA 118
Query: 160 -LHTARSRNDQVLTDFRLWCRDAIDTIVR-SIQRLQVALVKLALKNEGLIVPGYTHLQRA 217
+H A + D + L + AI +++ +I + ++ L ++ + + TH Q A
Sbjct: 119 FIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPA 178
Query: 218 QPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFC-PLGACALAGTGLPI-------DRFMT 269
P + L+ +V +L+R +L + + F +G P F+T
Sbjct: 179 TPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVT 238
Query: 270 AEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDS 329
+ L F A + + N+I+ + + W + F T ++
Sbjct: 239 SLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDI---WSYISLGYFKQKTIAEE 295
Query: 330 VSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 364
V GSS MP K NP E G +
Sbjct: 296 V--GSSTMPHKVNPIDFENAEGNLGLSNALFIHFA 328
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 58.1 bits (140), Expect = 3e-09
Identities = 56/319 (17%), Positives = 104/319 (32%), Gaps = 43/319 (13%)
Query: 81 ISYDKALYKHDIMG-----SKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWR 135
+ + + L H + + L +++ + R + IER
Sbjct: 41 VRWLQKLAAHAAIKEVPAFAADAIGYL--DAIVASFSEEDAAR-IKTIERTT-------- 89
Query: 136 TDREDVHMNIEAALTDIIGEPAKK------LHTARSRNDQVLTDFRLWCRDAIDTIV-RS 188
DV +E L + + E + +H A + D L + A D ++
Sbjct: 90 --NHDV-KAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPY 146
Query: 189 IQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMN 248
++L L LA++ + + T Q A P + + ++ER +L +
Sbjct: 147 WRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGK 206
Query: 249 FC-PLGACALAGTGLPI-------DRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANS 300
+G P + F+T+ +++ + N+
Sbjct: 207 INGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNT 266
Query: 301 IIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDL 360
I+ + W A F T + + GSS MP K NP E G L
Sbjct: 267 ILIDFDRDV---WGYIALNHFKQKTIAGEI--GSSTMPHKVNPIDFENSEGNLGLSNAVL 321
Query: 361 VTLLTLCKGLPLA-YNRDL 378
L + LP++ + RDL
Sbjct: 322 QHLASK---LPVSRWQRDL 337
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 56.4 bits (137), Expect = 1e-08
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
++ L L + + ++ G T+LQ A P+ L + +V LE + ++ +
Sbjct: 163 QLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHV 222
Query: 248 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 299
LG A+ GTGL R + E T N +A++ D +++ A
Sbjct: 223 AELALGGTAV-GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGAL 281
Query: 300 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 344
+A L +G E + +E P GSSIMP K NP
Sbjct: 282 KGLAASLMKIANDVRWLASGPRCGIG-EISIPENE------P------GSSIMPGKVNPT 328
Query: 345 PMELVRGKSARVIGDLVT 362
E + +V+G+ V
Sbjct: 329 QCEALTMLCCQVMGNDVA 346
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 54.9 bits (133), Expect = 3e-08
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 37/198 (18%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
+ L+ AL + + + ++ G THLQ A P+ L YV+Q+E R+ +
Sbjct: 188 ELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTL 247
Query: 248 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 299
+F G A+ GTGL D + + + T N +A++ D ++E A
Sbjct: 248 SFLAQGGTAV-GTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGAL 306
Query: 300 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 344
+ +A L E +L +E P GSSIMP K NP
Sbjct: 307 NTLACSLFKIAQDIRYLGSGPRCGYH-ELMLPENE------P------GSSIMPGKVNPT 353
Query: 345 PMELVRGKSARVIGDLVT 362
E + +V+G+
Sbjct: 354 QNEALTQVCVQVMGNNAA 371
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 54.9 bits (132), Expect = 3e-08
Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 13/208 (6%)
Query: 179 RDAIDTIVR-SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDA 237
+ ++ +V ++++ + L LA++ + + TH Q A + + ++
Sbjct: 135 KACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHV 194
Query: 238 GRLQDCRVRMNFC-PLG---ACALAGTGLPIDRFMTAEALEFTAPMRNSIDA-VSDRDFV 292
G ++ +V F +G A +A + + + + D D++
Sbjct: 195 GVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYI 254
Query: 293 LEFLSANSIIAIHLSRLGEE-WVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRG 351
E + L L + W+ ++ V GSS MP K NP E G
Sbjct: 255 CELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEV--GSSTMPHKVNPIDFENAEG 312
Query: 352 KSARVIGDLVTLLTLCKGLPLA-YNRDL 378
+ + LP + RDL
Sbjct: 313 -NLHIANAF--FKLFSSKLPTSRLQRDL 337
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 54.5 bits (132), Expect = 4e-08
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
+++ L A + ++ G THL A P+ L + ++ QL+ +++ +
Sbjct: 163 AVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGL 222
Query: 248 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 299
+G A+ GTGL + E T N A++ D ++ + A
Sbjct: 223 YNLAIGGTAV-GTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAI 281
Query: 300 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 344
+A L + +G E + A+E P GSSIMP K NP
Sbjct: 282 RTLAGALMKIGNDVRWLASGPYAGIG-EITIPANE------P------GSSIMPGKVNPT 328
Query: 345 PMELVRGKSARVIGDLVT 362
+E + RV G+ T
Sbjct: 329 QVEALTMVVVRVYGNDHT 346
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 54.5 bits (132), Expect = 5e-08
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
+Q+L AL + + +I G TH Q A P+ L YV+Q++ R++ R+
Sbjct: 190 GLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRI 249
Query: 248 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 299
G A+ GTGL I + A+ T N +A++ D ++E A
Sbjct: 250 YELAAGGTAV-GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAM 308
Query: 300 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 344
+ A L S LGE I P + GSSIMP K NP
Sbjct: 309 NTTACSLMKIANDIRFLGSGPRSGLGE-----------LILPEN--EPGSSIMPGKVNPT 355
Query: 345 PMELVRGKSARVIGDLVT 362
E + +A+V+G+ V
Sbjct: 356 QCEAMTMVAAQVMGNHVA 373
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 54.1 bits (131), Expect = 5e-08
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 37/198 (18%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
++ L L + + +I G THLQ A P+ L+ Y+ Q+E R++D ++
Sbjct: 184 ALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKV 243
Query: 248 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 299
G A+ GTG+ I D + EFT N ++++ D ++EF
Sbjct: 244 YLLAQGGTAV-GTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTL 302
Query: 300 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 344
+ IA+ L LG E L +E P GSSIMP K NP
Sbjct: 303 NTIAVSLMKIANDIRLLGSGPRCGLG-ELHLPENE------P------GSSIMPGKVNPT 349
Query: 345 PMELVRGKSARVIGDLVT 362
+E + +V+G+ VT
Sbjct: 350 QVEALTMVCTQVMGNHVT 367
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 52.2 bits (126), Expect = 2e-07
Identities = 58/195 (29%), Positives = 80/195 (41%), Gaps = 38/195 (19%)
Query: 188 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 247
++Q+L AL AL ++ G THL A PV L Y Q+E R++ C R+
Sbjct: 184 ALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRL 243
Query: 248 NFCPLGACALAGTGL--PI--DRFMTAEALEFT-----APMRNSIDAVSDRDFVLEFLSA 298
+G A+ GTGL P + A + T NS +A + RD ++E A
Sbjct: 244 GELAIGGTAV-GTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGA 302
Query: 299 NSIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNP 343
IA+ L + L E L + P GSSIMP K NP
Sbjct: 303 LRTIAVSLTKIANDIRWMGSGPLTGLA-EIQLPDLQ------P------GSSIMPGKVNP 349
Query: 344 DPMELVRGKSARVIG 358
E V +A+VIG
Sbjct: 350 VLPEAVTQVAAQVIG 364
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 58/413 (14%), Positives = 117/413 (28%), Gaps = 119/413 (28%)
Query: 131 KFMWRTDREDVHMNIEAALT-----DIIGEPAKKLHTAR------SRNDQVLTDFR---- 175
F+ D +DV ++ L+ II T R S+ ++++ F
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 176 ------LWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVL-LQHLLLA 228
L + S+ + L N+ + Y ++ R QP L L+ LL
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALL- 145
Query: 229 YVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSD 288
+L + + G+G + +
Sbjct: 146 ---ELRPAKN-------------VLIDGVLGSGKTW---VALDVC--------------- 171
Query: 289 RDFVLEFLSANSIIAIHLSRLGEE-------WVLWASEEFGFITPSDSVSTGSSIMPQKK 341
+ ++ I ++L L + + + SD S
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN--------- 222
Query: 342 NPDPMELVRGKSARVIGDLV---TLLTLCKGLPLAYNRDLQEDKE--PTFD-SVKTIVGM 395
+ ++ + R++ LL L ++Q + + F+ S K ++
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVL---------LNVQ-NAKAWNAFNLSCKILLTT 272
Query: 396 LEVS-AEFAQNITFNVERIKKALPAGYLDATT--LADYL----------VNKQVPFRTSH 442
+F T + D L YL V P R S
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS- 331
Query: 443 DIVGKAVA-----------LCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGV 484
I+ +++ + K + + SL+ L P + +++ L V
Sbjct: 332 -IIAESIRDGLATWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSV 380
Score = 37.9 bits (87), Expect = 0.009
Identities = 36/223 (16%), Positives = 61/223 (27%), Gaps = 56/223 (25%)
Query: 49 VLCKMSASKEVKLWGGRFEESVTDAVEKFTESISYDK-----ALYKHDI--------MGS 95
+L +W + V V K + +K + I
Sbjct: 391 LLSL--------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 96 KA-HASMLAKQGLISDSDKNSILR-----------G--LDEIERQIEAGKFMWRTDREDV 141
A H S++ + D + ++ G L IE F V
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF------RMV 496
Query: 142 HMN---IEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 198
++ +E + A L + + + I +RL A++
Sbjct: 497 FLDFRFLEQKI-----RHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILD 550
Query: 199 LALK-NEGLIVPGYTHL-QRAQPVLLQHLLLAYVEQLERDAGR 239
K E LI YT L + A L A E+ + R
Sbjct: 551 FLPKIEENLICSKYTDLLRIA----LMAEDEAIFEEAHKQVQR 589
>3exm_A Phosphatase SC4828; nucleoside diphosphatase, GDP/UDP'ASE, non-HYD
GDP analogue, lipocalcin fold, metalloprotein,
hydrolase; HET: GP2; 1.65A {Streptomyces coelicolor A3}
PDB: 3cbt_A* 3bxt_A
Length = 237
Score = 30.1 bits (67), Expect = 1.7
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 104 KQGLISDSDKNSILRGLDEIERQIEAGKF-------MWRTD 137
+ GL+ + + R +I A WR D
Sbjct: 176 RDGLMDPASAGRVRRAGRSAVAEIRAWGSPFADGWEHWRPD 216
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.9
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 21/47 (44%)
Query: 187 RSIQRLQVALVKL-ALKNEGLIVPGYTHLQRAQPVL-LQHLLLAYVE 231
+++++LQ +L KL A + P L ++ A +E
Sbjct: 20 QALKKLQASL-KLYA--------DD------SAPALAIK----ATME 47
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19,
conformational changes, chitin-binding, glycosidase,
hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A
Length = 204
Score = 28.7 bits (63), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 476 KDVYEYLGVENAIRKFSSFGSTGSACVT-EQLHSWVA 511
K Y Y A +S FG+TGS V +L ++ A
Sbjct: 25 KGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFFA 61
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR,
immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB:
3b2u_A* 3c09_A*
Length = 214
Score = 28.2 bits (62), Expect = 5.7
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 356 VIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQ--NITF--NVE 411
+ GDL L +G + L + +VK I G L + A ++ N+E
Sbjct: 32 ISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLE 91
Query: 412 RI 413
I
Sbjct: 92 II 93
>1xg7_A Hypothetical protein; southeast collaboratory for structural
genomics, secsg, hyperthermophIle, pyrococcus FU protein
structure initiative; 1.88A {Pyrococcus furiosus} SCOP:
a.96.1.6
Length = 250
Score = 27.7 bits (61), Expect = 8.1
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 288 DRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPME 347
D + ++ + ANS+++ L+ GE+W + F +P+ KN
Sbjct: 46 DPEMFIKLVIANSLVSYQLTGRGEDWWWEFARYFSGREVDSIWKAYGEFLPKSKNNRR-- 103
Query: 348 LVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQE 380
L+ K R+ L TL Y ++++
Sbjct: 104 LIEAKLNRIRKVEGFLSTLTLKDLEGYYKNMKM 136
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase
maturation, [4Fe-4S] cluster, thiol redox binding
protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Length = 372
Score = 27.7 bits (62), Expect = 10.0
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 92 IMGSKAHASMLAKQGL---ISDSDKNSILRGLDEIERQIEAGKF 132
I+G K + K G+ ++ + N +L + + R + G+
Sbjct: 206 IIGVKGWEYLTEKYGIPQVVAGFEPNDVLMAILMLIRMYKEGEA 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.383
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,654,211
Number of extensions: 468129
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 49
Length of query: 520
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 422
Effective length of database: 3,965,535
Effective search space: 1673455770
Effective search space used: 1673455770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)