RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010020
(520 letters)
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 384 bits (987), Expect = e-130
Identities = 199/455 (43%), Positives = 283/455 (62%), Gaps = 1/455 (0%)
Query: 61 LWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGL 120
LWGGRF ++ ++F +S+ +D L + DI+GS A + L G+++ ++ + L
Sbjct: 1 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 60
Query: 121 DEIERQIEAGKF-MWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
+ + + A + +D ED+H +E L D +G+ KKLHT RSRNDQV TD +LWC+
Sbjct: 61 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCK 120
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
D + ++ + ++LQ ALV+ A N+ ++PGYTHLQRAQPV H LAYVE L RD R
Sbjct: 121 DTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESR 180
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
LQD R++ PLG ALAGT IDR A L F + RNS+D+VSDRD VLE LSA
Sbjct: 181 LQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAA 240
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+I +HLSR E+ + + + E GF+ SD V++GSS+MPQKKNPD +EL+RGK RV G
Sbjct: 241 AIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGA 300
Query: 360 LVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA 419
L ++ KGLPLAYN+D+QEDKE FD++ T + L ++A I R ++A
Sbjct: 301 LTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQ 360
Query: 420 GYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVY 479
GY +AT LADYLV K VPFR +H IVG+AV + + L+DL L E++ + V D+DVY
Sbjct: 361 GYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVY 420
Query: 480 EYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLG 514
L +++ + K ++ G V + + A+LG
Sbjct: 421 PILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG 455
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 367 bits (943), Expect = e-123
Identities = 192/454 (42%), Positives = 276/454 (60%), Gaps = 1/454 (0%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
KLWGGRF +V +EKF SI+YD+ L++ D+ GSKA++ L K GL++ ++ + IL G
Sbjct: 2 KLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHG 61
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
LD++ + G F ++ ED+H E L ++IG A KLHT RSRNDQV+TD RLW R
Sbjct: 62 LDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMR 121
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
T+ + L +V A ++ PGYTHLQRAQP+ H +L++ L RD+ R
Sbjct: 122 QTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSER 181
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L + R R+N PLG+ A+AG L +DR + L F A NS+DA S+RDFV EFL
Sbjct: 182 LLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWR 241
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
S+ HLSR+ E+ +L+ ++EF F+ SD+ STGSS+MP+KKNPD +EL+R K+ RV G
Sbjct: 242 SLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGR 301
Query: 360 LVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA 419
LL KGLP YN+DLQEDKE F+ T+ +L+V+ + + E + +AL
Sbjct: 302 CAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSP 361
Query: 420 GYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVY 479
L AT LA YLV K +PFR +H+ GKAV + +K L LSL E+++++P+F DV
Sbjct: 362 DML-ATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVI 420
Query: 480 EYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 513
+++ ++ + G T + V Q+ A L
Sbjct: 421 CVWDYRHSVEQYGALGGTARSSVDWQIRQVRALL 454
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 342 bits (877), Expect = e-114
Identities = 189/444 (42%), Positives = 282/444 (63%), Gaps = 2/444 (0%)
Query: 71 TDA-VEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEA 129
TD +EK SI+YD+ L + DI GS A+A L K G+++ ++ IL GL++I +
Sbjct: 1 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 60
Query: 130 GKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSI 189
G F+ + ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ ++++ I +
Sbjct: 61 GVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHL 120
Query: 190 QRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNF 249
+L LV+ A +I+PGY HLQ+AQP+ LL++ L RD+ RL + + R+N
Sbjct: 121 LQLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINV 180
Query: 250 CPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRL 309
PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++
Sbjct: 181 LPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKM 240
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G L ++L + KG
Sbjct: 241 AEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKG 300
Query: 370 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLAD 429
LP YN+DLQEDKE FD V T+ +L+V+ + + E ++KAL L AT LA
Sbjct: 301 LPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLAL 359
Query: 430 YLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIR 489
YLV K VPFR +H GKAV L +K + LSL++++S++P F DV + N++
Sbjct: 360 YLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVE 419
Query: 490 KFSSFGSTGSACVTEQLHSWVAKL 513
++++ T + VT Q+ +
Sbjct: 420 QYTALAGTAKSSVTTQIEQLRELM 443
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 233 bits (595), Expect = 3e-72
Identities = 77/406 (18%), Positives = 158/406 (38%), Gaps = 16/406 (3%)
Query: 84 DKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHM 143
++ +K + A+ G I D I +I + + R DV +
Sbjct: 8 EENRFKAWLEVEILACEAWAELGDIPKEDVQKIRENASFDIERINEIE---QETRHDV-V 63
Query: 144 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 203
A+++ +GE K +H + D V T + A +++ ++ L A ++
Sbjct: 64 AFTRAVSETLGEERKWVHYGLTSTDVVDTALSYLIKQANSILLQDLENFVEILKNKAKEH 123
Query: 204 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP 263
+ ++ G TH A+P L + E+++R+ R + + F + GT
Sbjct: 124 KYTVMMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFKQAASGVEFGKMSGAV--GTYAN 181
Query: 264 IDRFMTAEALEFTAPMRNSI-DAVSDRDFVLEFLSANSIIAIHLSR-LGEEWVLWASEEF 321
I+ F+ + E I RD +++A S+IA + + E L SE
Sbjct: 182 INPFVESYVCEKLGLQPAPISTQTLQRDRHAHYMAAISLIATSIEKFAVEIRGLQKSETR 241
Query: 322 GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQ-- 379
GSS MP K+NP E + G + + G ++T + +PL + RD+
Sbjct: 242 EVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHMLTAY---ENVPLWHERDISHS 298
Query: 380 -EDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQV 436
++ D+ + ML +N+T E +K+ + G + + + L++K +
Sbjct: 299 SAERIILPDATIALNYMLNRFGNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDKGM 358
Query: 437 PFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYL 482
++D+V K+ + L + + + +++ +
Sbjct: 359 AREEAYDVVQPRAMEAWEKQVAFKSLVEADETISSRLSAEEIEDCF 404
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 210 bits (536), Expect = 2e-63
Identities = 78/413 (18%), Positives = 157/413 (38%), Gaps = 14/413 (3%)
Query: 84 DKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHM 143
++A Y+ + A + G+I I +E K + DV
Sbjct: 15 EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKID---VELFKKIEEKTNHDVVA 71
Query: 144 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 203
+E + +IGE ++ H + +D + T L +A ++ S++ L ++A +
Sbjct: 72 FVEG-IGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRY 130
Query: 204 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP 263
+ G TH A+P +L + +++R+ RL+ +++ + +P
Sbjct: 131 KHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVP 190
Query: 264 IDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGF 323
+ A + P S V RD +LS +I+A + R+ E E
Sbjct: 191 PEVEEKALSYLGLKPEPVS-TQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLE 249
Query: 324 IT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDK 382
+ P GSS MP KKNP E + G S + + L + + L + RD+
Sbjct: 250 VEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSL---ENIALWHERDISHSS 306
Query: 383 EPTFDSVKTIVGMLEVSA---EFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVP 437
+ + + +N+ N ER+KK + G + + + L+ K +
Sbjct: 307 VERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLT 366
Query: 438 FRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRK 490
+ ++DIV + + E + L++ V +++ E + ++
Sbjct: 367 RKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKH 419
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 207 bits (528), Expect = 6e-62
Identities = 84/432 (19%), Positives = 150/432 (34%), Gaps = 51/432 (11%)
Query: 60 KLWGGRFEESVTD---AVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSI 116
KLWG + + S+ + EK S+ + AL K +A A + GL+S+ ++I
Sbjct: 17 KLWGAQTQRSLEHFRISTEKMPTSLIHALALTK------RAAAKVNEDLGLLSEEKASAI 70
Query: 117 LRGLDEIERQIEAGKF-----------MWRTDREDVHMNIEAALTDIIGEPAKKLHTARS 165
+ DE+ +F + +V N + L + +K+H
Sbjct: 71 RQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDD 130
Query: 166 RNDQVLTDFRLW-------CRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218
N ++ ++ ++ L L + + ++ G THLQ A
Sbjct: 131 VNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDAT 190
Query: 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTA- 277
P+ L + +V LE + ++ + LG GTGL + A
Sbjct: 191 PLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGG-TAVGTGLNTHPEYARRVADELAV 249
Query: 278 -------PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS-EEFGFITPSDS 329
N +A++ D +++ A +A L ++ + AS G S
Sbjct: 250 ITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIP 309
Query: 330 VSTG-SSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDS 388
+ SSIMP K NP E + +V+G+ V + N S
Sbjct: 310 ENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQS 369
Query: 389 VKTIVGMLEVSAEF-AQNITFNVERIKKALPA------------GYLDATTLADYLVNKQ 435
V+ + +E + A I N ERI + L GY A +A +
Sbjct: 370 VRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEG 429
Query: 436 VPFRTSHDIVGK 447
+ + + +G
Sbjct: 430 LTLKAAALALGY 441
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 188 bits (479), Expect = 9e-55
Identities = 80/431 (18%), Positives = 146/431 (33%), Gaps = 50/431 (11%)
Query: 60 KLWGGRFEESV-----TDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKN 114
K WG + + S A E+ + + + K K+ A + G +
Sbjct: 18 KYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLK------KSAAIVNESLGGLDPKISK 71
Query: 115 SILRGLDEIERQIEAGKFMW----RTDREDVHMNIEAALTDIIGE------------PAK 158
+I + DE+ F +MN +++ E P
Sbjct: 72 AIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNN 131
Query: 159 KLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRA 217
+ ++S ND T + I + ++ + L+ AL + + + ++ G THLQ A
Sbjct: 132 HCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDA 191
Query: 218 QPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGAC-------ALAGTGLPIDRFMTA 270
P+ L YV+Q+E R+ ++F G G + I ++
Sbjct: 192 TPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISK 251
Query: 271 EALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS-EEFGFITPSDS 329
E N +A++ D ++E A + +A L ++ ++ S G+
Sbjct: 252 ETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLP 311
Query: 330 -VSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDS 388
GSSIMP K NP E + +V+G+ + N +S
Sbjct: 312 ENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNS 371
Query: 389 VKTIVGMLEVSAEF-AQNITFNVERIKKALPA------------GYLDATTLADYLVNKQ 435
++ I + I N RI + L GY A+ +A K
Sbjct: 372 IRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKG 431
Query: 436 VPFRTSHDIVG 446
+ + S +G
Sbjct: 432 ITLKESALELG 442
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 183 bits (466), Expect = 7e-53
Identities = 82/425 (19%), Positives = 161/425 (37%), Gaps = 46/425 (10%)
Query: 91 DIMGSKAHASML--------------AKQGLISDSDKNSILRGLDEIERQIEAGKFMWRT 136
I G + H ++ + GL+ I++ DE+ +F+
Sbjct: 31 PITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDP 90
Query: 137 DREDVHMNIEAALTDIIGE-----------------PAKKLHTARSRNDQVLTDFRLWCR 179
+ +I ++I P ++ ++S ND T +
Sbjct: 91 IQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVL 150
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
++ ++ + + +Q +K A + G+I G THLQ A P+LL AY + RD R
Sbjct: 151 SLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIER 210
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRF-------MTAEALEFTAPMRNSIDAVSDRDFV 292
+ + R + +GA A+ + + + ++ +DA + D
Sbjct: 211 IANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCY 270
Query: 293 LEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT--PSDSVSTGSSIMPQKKNPDPMELVR 350
E SA + I++S++ + L AS ++ + GSSIMP K NP E++
Sbjct: 271 TEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMN 330
Query: 351 GKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFA-QNITFN 409
+ +V G+ +T+ + + N S+ + + + E + I N
Sbjct: 331 QVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKAN 390
Query: 410 VERIKKALPAGYLDATTLADYLVNKQVP--FRTSHDIVGKAVALCVSKECQLQDLSLDEM 467
ER+K+ + T + ++ + R ++ LC+ K L + L+E+
Sbjct: 391 EERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCI-KYGVLTEEQLNEI 449
Query: 468 RSLNP 472
LNP
Sbjct: 450 --LNP 452
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 177 bits (448), Expect = 2e-50
Identities = 94/436 (21%), Positives = 162/436 (37%), Gaps = 15/436 (3%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
+L+ F + E F+ D+ + + A A A GL+ S +I
Sbjct: 2 QLFDAYF--TAPAMREIFS-----DRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAA 54
Query: 120 LDEIERQIEAGKFMWRTDREDVH---MNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRL 176
A T + + + E + +H + D + T L
Sbjct: 55 CQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVL 114
Query: 177 WCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERD 236
RDA+D I + +L L + ALK+ + G T LQ A PV L L + L R
Sbjct: 115 QLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRH 174
Query: 237 AGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEF-TAPMRNSIDAVSDRDFVLEF 295
RLQ+ R R+ G + + L AEAL + RD ++EF
Sbjct: 175 RQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEF 234
Query: 296 LSANSIIAIHLSRLGEEWVLWASEEF-GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSA 354
S ++A L + G + L E PS GSS MP K+NP ++ G +
Sbjct: 235 ASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAAT 294
Query: 355 RVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIK 414
RV G L TL + E D + G L + A+ + + R++
Sbjct: 295 RVPGLLSTLFAAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMR 354
Query: 415 KALPA--GYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNP 472
+ L G + A ++ L + + +H ++ + V+++ L+ + DE +
Sbjct: 355 RNLDLTQGLVLAEAVSIVLAQR-LGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAE 413
Query: 473 VFDKDVYEYLGVENAI 488
+ +++ L + +
Sbjct: 414 LSGEELDRLLDPAHYL 429
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 169 bits (427), Expect = 1e-47
Identities = 85/451 (18%), Positives = 168/451 (37%), Gaps = 28/451 (6%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
+L+ F ++ I D+AL + + A A A+ G+I S I R
Sbjct: 1 QLYASLF-------YQRDVTEIFSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRA 53
Query: 120 LDEIERQIEAGKFMWRTDRE-DVHMNIEAALTDII----GEPAKKLHTARSRNDQVLTDF 174
+I+ T ++ + LT I+ + A+ +H + D + T
Sbjct: 54 AKTAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDADEDAARYVHWGATSQDILDTAC 113
Query: 175 RLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLE 234
L CRDA+ + +Q+ + A ++ G T LQ+A P+ L H L + +
Sbjct: 114 ILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFK 173
Query: 235 RDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNS-IDAVSDRDFVL 293
RD R+ + R+ LG + L + EA + + +RD ++
Sbjct: 174 RDLDRINAIKARVLVAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQTACTWHGERDRIV 233
Query: 294 EFLSANSIIAIHLSRLGEEWVLWASEEFGF-ITPSDSVSTGSSIMPQKKNPDPMELVRGK 352
E S II ++ ++ +W L E P+ GSS MP K+NP V
Sbjct: 234 EIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAA 293
Query: 353 SARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 412
+ RV + ++ + + + G LE + + + + N E
Sbjct: 294 ANRVPALMSSIYQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAEN 353
Query: 413 IKKALPAGYLDATTLADYLV-NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLN 471
+ + + + A + + +H +V A V+++ L+D+ + ++ +
Sbjct: 354 MHQNIECTHGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDI-ISQVDEVK 412
Query: 472 PVFDKDVYE-------YLG-----VENAIRK 490
F+ + YLG ++ +++
Sbjct: 413 QYFNPSQLDEIFKPESYLGNIQDQIDAVLQE 443
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 168 bits (427), Expect = 2e-47
Identities = 73/398 (18%), Positives = 142/398 (35%), Gaps = 36/398 (9%)
Query: 96 KAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDI--- 152
KA A + G + + +I++ +E+ + F + + ++
Sbjct: 51 KAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIAN 110
Query: 153 -------------IGEPAKKLHTARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVK 198
P ++ +S ND T + A+ + +++ L
Sbjct: 111 RASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTA 170
Query: 199 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 258
A + ++ G THL A P+ L + ++ QL+ +++ + +G A+
Sbjct: 171 KAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVG 230
Query: 259 GTGLPIDRFMTAEALEFTA-------PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGE 311
RF A N A++ D ++ + A +A L ++G
Sbjct: 231 TGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGN 290
Query: 312 EWVLWASEEFGFIT--PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
+ AS + I + GSSIMP K NP +E + RV G+ T+
Sbjct: 291 DVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQ 350
Query: 370 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEF-AQNITFNVERIKKALPAGYLDATTLA 428
N T +S+ + + AQ I N+ERI++ L + AT L
Sbjct: 351 GNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALN 410
Query: 429 DYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDE 466
+ + + +IV KA+ ++ L+ +L+
Sbjct: 411 KAI-----GYDKAAEIVKKALK----EKKTLKQAALEL 439
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 161 bits (408), Expect = 1e-44
Identities = 77/412 (18%), Positives = 148/412 (35%), Gaps = 38/412 (9%)
Query: 96 KAHASMLAKQGLISDSDKNSILRGLDEIERQIE-AGKFMWRTDREDVHMNIEAALTDIIG 154
KA A + I S N+I+ DE+ + +F + ++ +++
Sbjct: 56 KAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLA 115
Query: 155 EPAK-----------------KLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALV 197
++ +S ND T FR+ ++ +V +I +L+
Sbjct: 116 NIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFE 175
Query: 198 KLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACAL 257
+ A++ + ++ G T LQ A P+ L A+ L+ + +Q + LGA A+
Sbjct: 176 RKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAI 235
Query: 258 AGTGLPIDRFMTAEALEFTAPMRN-------SIDAVSDRDFVLEFLSANSIIAIHLSRLG 310
+ + I+A SD + A +A+ +S++
Sbjct: 236 GTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKIC 295
Query: 311 EEWVLWASEEFGFITPSD--SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCK 368
+ L +S + + + GSSIMP K NP E+V +VIG+ T+ +
Sbjct: 296 NDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAE 355
Query: 369 GLPLAYNRDLQEDKEPTFDSVKTIV-GMLEVSAEFAQNITFNVERIKKALPAGYLDATTL 427
L N + F+SV + + + IT N E + + ++ +
Sbjct: 356 AGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYV----YNSIGI 411
Query: 428 ADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVY 479
YL PF H +C ++++ L E L D++
Sbjct: 412 VTYL----NPFI-GHHNGDIVGKICAETGKSVREVVL-ERGLLTEAELDDIF 457
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 153 bits (388), Expect = 2e-42
Identities = 61/392 (15%), Positives = 132/392 (33%), Gaps = 13/392 (3%)
Query: 84 DKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHM 143
++A+ + +A L + G+ + + + + D+ +
Sbjct: 20 NEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRLER----ETGHDI-L 74
Query: 144 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 203
++ L + +H + ND + T + L R A+ + + + L +A K
Sbjct: 75 SLVLLLEQK--SGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKY 132
Query: 204 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP 263
+ L + G TH Q A+P+ L Y +L +L + GA +
Sbjct: 133 KTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQLALAEEFIRAKIGGAVGTMASWGE 192
Query: 264 IDRFMTAEALEFTAPMRNSIDAV-SDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG 322
+ + E + I + R+ SA +++A RL E + E G
Sbjct: 193 LGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIG 252
Query: 323 FITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDK 382
+ GSS MP K NP E + + V + ++
Sbjct: 253 EVVEGG---GGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHERDLTNSANER 309
Query: 383 EPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRT 440
+++ + +L + +N+ + ERI + L Y+ + ++ +
Sbjct: 310 VWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAE 369
Query: 441 SHDIVGKAVALCVSKECQLQDLSLDEMRSLNP 472
++ + AL + + +++ SL
Sbjct: 370 AYKKAKEVKALTFEYQKWPVERLIEDALSLKL 401
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum
vulgare) [TaxId: 4513]}
Length = 243
Score = 29.2 bits (65), Expect = 1.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 476 KDVYEYLGVENAIRKFSSFGSTGSACVTEQLHS 508
K Y Y A F FG+TGSA ++ +
Sbjct: 26 KGFYTYDAFVAAAAAFPGFGTTGSADAQKREVA 58
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 27.1 bits (59), Expect = 4.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 451 LCVSKECQLQDLSLDEMRSLNPVFDKD 477
+C S E +++ + + S+ P F KD
Sbjct: 214 ICQSDEGPRPNVTAESLSSIRPAFIKD 240
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase
{Alicyclobacillus acidocaldarius [TaxId: 405212]}
Length = 352
Score = 27.0 bits (59), Expect = 6.4
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 213 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEA 272
L RA +++LL Q + + + L AL GLP D +A
Sbjct: 7 TLDRA----VEYLL---SCQKD-EGYWWGPLISPVWDTGLAVLALRAAGLPADHDRLVKA 58
Query: 273 LEF 275
E+
Sbjct: 59 GEW 61
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia
ensiformis) [TaxId: 3823]}
Length = 242
Score = 26.5 bits (58), Expect = 6.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 476 KDVYEYLGVENAIRKFSSFGSTGSACVTEQ 505
K Y Y A R F FG+TG ++
Sbjct: 26 KGFYSYNAFVTAARSFGGFGTTGDTNTRKR 55
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 26.3 bits (57), Expect = 9.2
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 400 AEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQL 459
E + + ++ +A G + + + D E
Sbjct: 177 EEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQD------------EGPR 224
Query: 460 QDLSLDEMRSLNPVFDKD 477
+D SL+++ +L PVF +
Sbjct: 225 RDTSLEKLAALRPVFREG 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.383
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,804,012
Number of extensions: 82403
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 21
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)