Query 010022
Match_columns 520
No_of_seqs 147 out of 186
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 20:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1340 Uncharacterized archae 99.6 5.4E-12 1.2E-16 128.2 34.7 220 89-323 9-242 (294)
2 COG1340 Uncharacterized archae 99.0 4.8E-07 1E-11 92.5 29.1 75 251-325 156-230 (294)
3 PRK03918 chromosome segregatio 98.1 0.0067 1.4E-07 70.4 32.6 29 90-118 456-484 (880)
4 TIGR02169 SMC_prok_A chromosom 97.9 0.013 2.9E-07 69.2 31.2 34 90-123 678-711 (1164)
5 TIGR02169 SMC_prok_A chromosom 97.9 0.02 4.3E-07 67.8 32.4 51 92-142 673-723 (1164)
6 PRK11637 AmiB activator; Provi 97.9 0.015 3.3E-07 62.7 28.3 68 89-156 43-110 (428)
7 PHA02562 46 endonuclease subun 97.8 0.04 8.6E-07 60.7 31.4 75 239-313 330-404 (562)
8 TIGR02168 SMC_prok_B chromosom 97.8 0.041 8.8E-07 64.9 33.0 66 89-154 673-738 (1179)
9 KOG0161 Myosin class II heavy 97.8 0.026 5.6E-07 70.6 31.7 246 100-352 936-1202(1930)
10 COG1196 Smc Chromosome segrega 97.8 0.046 9.9E-07 66.2 33.1 14 30-43 58-71 (1163)
11 PRK02224 chromosome segregatio 97.8 0.046 9.9E-07 63.7 32.1 41 267-307 599-639 (880)
12 COG1196 Smc Chromosome segrega 97.8 0.028 6.1E-07 67.9 31.0 102 247-350 815-916 (1163)
13 PRK02224 chromosome segregatio 97.7 0.14 3E-06 59.8 34.4 79 245-323 362-447 (880)
14 TIGR02168 SMC_prok_B chromosom 97.7 0.042 9.2E-07 64.8 30.1 42 92-133 231-272 (1179)
15 PRK04778 septation ring format 97.6 0.045 9.7E-07 61.4 28.3 92 244-335 353-444 (569)
16 PRK03918 chromosome segregatio 97.6 0.14 3.1E-06 59.5 33.2 39 86-124 444-483 (880)
17 PF00261 Tropomyosin: Tropomyo 97.6 0.068 1.5E-06 53.5 26.4 218 93-323 1-225 (237)
18 PHA02562 46 endonuclease subun 97.6 0.084 1.8E-06 58.2 29.6 17 345-361 408-424 (562)
19 TIGR00606 rad50 rad50. This fa 97.6 0.049 1.1E-06 66.6 30.0 143 173-328 821-967 (1311)
20 PF07888 CALCOCO1: Calcium bin 97.6 0.14 2.9E-06 57.3 30.6 186 91-296 141-326 (546)
21 KOG0964 Structural maintenance 97.5 0.081 1.7E-06 61.9 28.7 244 90-362 682-932 (1200)
22 TIGR00606 rad50 rad50. This fa 97.5 0.16 3.5E-06 62.3 33.1 246 111-368 416-675 (1311)
23 PRK11637 AmiB activator; Provi 97.5 0.03 6.6E-07 60.4 24.0 71 89-159 50-120 (428)
24 PF10174 Cast: RIM-binding pro 97.4 0.12 2.5E-06 60.2 27.7 238 111-359 326-589 (775)
25 COG1579 Zn-ribbon protein, pos 97.3 0.064 1.4E-06 54.2 21.9 164 119-317 22-185 (239)
26 PRK01156 chromosome segregatio 97.3 0.6 1.3E-05 54.9 33.2 28 90-117 473-500 (895)
27 TIGR03185 DNA_S_dndD DNA sulfu 97.3 0.47 1E-05 54.1 31.0 45 91-135 207-251 (650)
28 KOG0964 Structural maintenance 97.2 0.096 2.1E-06 61.3 24.7 145 200-357 392-541 (1200)
29 KOG0996 Structural maintenance 97.2 0.2 4.4E-06 59.7 27.6 70 254-323 522-591 (1293)
30 PRK04778 septation ring format 97.2 0.55 1.2E-05 52.8 30.4 101 237-337 367-478 (569)
31 PF00038 Filament: Intermediat 97.2 0.35 7.6E-06 49.6 30.0 44 89-132 50-93 (312)
32 PRK01156 chromosome segregatio 97.1 0.64 1.4E-05 54.6 31.3 34 95-128 471-504 (895)
33 KOG0161 Myosin class II heavy 97.1 0.38 8.2E-06 60.7 30.0 257 91-347 1609-1904(1930)
34 COG4942 Membrane-bound metallo 96.9 0.87 1.9E-05 49.6 27.7 77 85-161 30-106 (420)
35 KOG0250 DNA repair protein RAD 96.9 0.2 4.2E-06 59.5 23.2 83 239-321 401-483 (1074)
36 KOG0996 Structural maintenance 96.7 1 2.2E-05 54.1 27.0 14 498-511 1138-1151(1293)
37 KOG0933 Structural maintenance 96.7 1 2.2E-05 53.4 26.7 37 102-142 676-712 (1174)
38 PF05701 WEMBL: Weak chloropla 96.6 1.4 3.1E-05 49.2 27.2 28 89-116 133-160 (522)
39 PF06160 EzrA: Septation ring 96.6 1.9 4.1E-05 48.6 28.6 108 242-349 347-461 (560)
40 KOG1029 Endocytic adaptor prot 96.5 0.35 7.5E-06 55.7 20.9 45 248-292 551-596 (1118)
41 TIGR03185 DNA_S_dndD DNA sulfu 96.5 2.3 5E-05 48.5 30.5 41 98-138 207-247 (650)
42 PRK09039 hypothetical protein; 96.4 0.8 1.7E-05 48.6 22.1 62 246-307 123-184 (343)
43 KOG0250 DNA repair protein RAD 96.3 3.6 7.9E-05 49.3 32.5 45 331-383 457-501 (1074)
44 PF12128 DUF3584: Protein of u 96.3 2.5 5.5E-05 51.8 28.9 72 86-157 600-671 (1201)
45 KOG0971 Microtubule-associated 96.3 3.4 7.3E-05 48.8 33.3 88 284-372 493-599 (1243)
46 KOG0977 Nuclear envelope prote 96.3 2.3 4.9E-05 47.9 25.6 40 98-137 40-79 (546)
47 PF10174 Cast: RIM-binding pro 96.2 3 6.4E-05 48.9 26.9 78 271-348 368-452 (775)
48 PF12128 DUF3584: Protein of u 96.2 2 4.3E-05 52.6 26.7 245 91-350 474-743 (1201)
49 KOG0979 Structural maintenance 96.1 2.6 5.6E-05 50.1 25.7 226 77-326 115-356 (1072)
50 KOG4673 Transcription factor T 96.0 4 8.7E-05 46.9 27.2 26 351-376 602-627 (961)
51 PF06160 EzrA: Septation ring 95.8 4.4 9.6E-05 45.7 29.0 70 90-161 249-318 (560)
52 PF07888 CALCOCO1: Calcium bin 95.8 4.6 0.0001 45.5 29.4 35 274-308 371-405 (546)
53 PF00261 Tropomyosin: Tropomyo 95.7 1.4 3.1E-05 44.1 19.2 62 249-310 172-233 (237)
54 TIGR02680 conserved hypothetic 95.7 8.7 0.00019 47.9 31.1 42 91-132 740-781 (1353)
55 KOG0977 Nuclear envelope prote 95.6 2 4.4E-05 48.3 21.3 38 276-313 305-342 (546)
56 KOG1029 Endocytic adaptor prot 95.5 3.8 8.2E-05 47.7 23.5 13 120-132 415-427 (1118)
57 PF05667 DUF812: Protein of un 95.3 6.8 0.00015 44.7 30.0 24 182-205 409-432 (594)
58 KOG0018 Structural maintenance 95.2 5.7 0.00012 47.6 24.3 91 234-324 404-494 (1141)
59 COG4477 EzrA Negative regulato 95.1 7.3 0.00016 43.7 24.7 79 245-323 353-431 (570)
60 KOG4674 Uncharacterized conser 95.0 15 0.00033 46.6 33.2 33 351-383 1489-1521(1822)
61 PF09728 Taxilin: Myosin-like 94.9 5.9 0.00013 41.6 30.9 60 247-306 203-262 (309)
62 PF00038 Filament: Intermediat 94.9 5.3 0.00012 41.0 26.6 71 89-159 57-134 (312)
63 PRK09039 hypothetical protein; 94.9 4.9 0.00011 42.7 21.0 52 91-142 44-95 (343)
64 PRK04863 mukB cell division pr 94.7 17 0.00037 45.8 32.7 91 65-155 758-878 (1486)
65 PF15070 GOLGA2L5: Putative go 94.5 12 0.00025 43.1 27.9 46 271-316 199-244 (617)
66 PF09726 Macoilin: Transmembra 94.5 13 0.00027 43.4 26.2 60 95-161 420-479 (697)
67 KOG0962 DNA repair protein RAD 94.5 7.6 0.00016 47.7 23.3 118 261-383 872-993 (1294)
68 PF12325 TMF_TATA_bd: TATA ele 94.3 0.97 2.1E-05 41.3 12.4 88 254-345 31-120 (120)
69 KOG4673 Transcription factor T 94.3 13 0.00028 42.9 25.9 108 174-295 402-516 (961)
70 COG1579 Zn-ribbon protein, pos 94.2 7.2 0.00016 39.7 23.5 12 177-188 55-66 (239)
71 PF05701 WEMBL: Weak chloropla 93.9 13 0.00029 41.6 28.9 19 175-193 173-191 (522)
72 KOG4674 Uncharacterized conser 93.8 26 0.00057 44.7 30.9 65 91-155 50-114 (1822)
73 PF09728 Taxilin: Myosin-like 93.6 11 0.00024 39.6 24.5 71 91-161 48-119 (309)
74 TIGR02680 conserved hypothetic 93.6 26 0.00056 43.9 26.3 34 89-122 745-778 (1353)
75 PF12718 Tropomyosin_1: Tropom 93.5 6.5 0.00014 36.8 17.2 16 175-190 74-89 (143)
76 PF12252 SidE: Dot/Icm substra 93.5 19 0.00042 43.5 23.3 192 142-340 1124-1345(1439)
77 TIGR00634 recN DNA repair prot 93.4 16 0.00036 41.0 24.9 30 296-325 347-376 (563)
78 PF10146 zf-C4H2: Zinc finger- 93.3 2.5 5.5E-05 42.6 14.3 58 248-305 34-91 (230)
79 PRK04863 mukB cell division pr 93.2 31 0.00068 43.6 34.0 153 172-325 433-619 (1486)
80 PF15070 GOLGA2L5: Putative go 93.1 20 0.00043 41.2 27.7 80 251-330 200-279 (617)
81 PF07106 TBPIP: Tat binding pr 92.9 1.4 3E-05 41.8 11.4 62 241-302 74-137 (169)
82 PF05667 DUF812: Protein of un 92.9 21 0.00046 40.8 25.3 51 89-139 317-367 (594)
83 COG3883 Uncharacterized protei 92.7 14 0.00029 38.3 23.1 46 114-159 59-104 (265)
84 KOG0612 Rho-associated, coiled 92.6 32 0.00069 42.2 29.9 14 175-188 537-550 (1317)
85 KOG0933 Structural maintenance 92.4 31 0.00067 41.6 26.5 22 451-472 991-1012(1174)
86 PF08317 Spc7: Spc7 kinetochor 92.3 4.1 8.9E-05 42.8 14.9 57 252-308 208-264 (325)
87 KOG0946 ER-Golgi vesicle-tethe 92.3 22 0.00047 42.0 21.3 93 71-163 611-720 (970)
88 smart00787 Spc7 Spc7 kinetocho 91.5 9.5 0.00021 40.2 16.5 56 254-309 205-260 (312)
89 PF10168 Nup88: Nuclear pore c 91.5 26 0.00057 41.0 21.5 103 91-215 541-649 (717)
90 TIGR01843 type_I_hlyD type I s 91.3 21 0.00046 37.5 24.1 23 87-109 75-97 (423)
91 PF08614 ATG16: Autophagy prot 91.3 3.2 7E-05 40.3 12.0 67 245-311 115-181 (194)
92 PF15619 Lebercilin: Ciliary p 91.3 16 0.00035 36.0 23.1 70 94-163 13-82 (194)
93 PF04849 HAP1_N: HAP1 N-termin 91.2 22 0.00048 37.5 23.3 141 172-322 158-303 (306)
94 PF04111 APG6: Autophagy prote 91.1 2.2 4.8E-05 44.7 11.3 32 176-217 45-76 (314)
95 PF09304 Cortex-I_coil: Cortex 90.8 5.1 0.00011 36.0 11.6 69 252-320 22-90 (107)
96 PF13166 AAA_13: AAA domain 90.8 35 0.00077 39.0 25.1 19 86-104 265-284 (712)
97 COG5185 HEC1 Protein involved 90.7 32 0.00069 38.4 24.3 128 89-216 333-505 (622)
98 PF14197 Cep57_CLD_2: Centroso 90.4 4.4 9.5E-05 33.6 10.2 64 251-314 3-66 (69)
99 KOG0976 Rho/Rac1-interacting s 90.2 46 0.001 39.4 28.4 130 181-310 214-366 (1265)
100 PF02403 Seryl_tRNA_N: Seryl-t 90.1 2.2 4.7E-05 37.3 8.8 60 247-306 37-99 (108)
101 TIGR01000 bacteriocin_acc bact 90.0 33 0.00072 37.5 23.6 32 86-117 90-121 (457)
102 COG0419 SbcC ATPase involved i 89.8 51 0.0011 39.4 31.2 40 176-216 602-641 (908)
103 KOG0018 Structural maintenance 89.8 56 0.0012 39.8 25.3 70 85-158 648-720 (1141)
104 COG4026 Uncharacterized protei 89.4 5.1 0.00011 40.5 11.6 68 271-349 153-220 (290)
105 smart00787 Spc7 Spc7 kinetocho 89.2 11 0.00023 39.8 14.5 68 91-158 163-234 (312)
106 KOG0962 DNA repair protein RAD 89.0 69 0.0015 39.8 27.2 30 270-299 1037-1066(1294)
107 PF14662 CCDC155: Coiled-coil 88.8 26 0.00057 34.7 18.1 75 250-324 78-152 (193)
108 KOG0994 Extracellular matrix g 88.6 71 0.0015 39.4 28.4 55 269-323 1593-1647(1758)
109 COG4372 Uncharacterized protei 88.3 43 0.00093 36.6 27.4 81 241-321 212-292 (499)
110 PF09789 DUF2353: Uncharacteri 88.2 39 0.00084 35.9 25.0 37 98-134 14-50 (319)
111 COG4942 Membrane-bound metallo 88.0 46 0.001 36.6 29.2 120 89-217 41-173 (420)
112 PF12718 Tropomyosin_1: Tropom 88.0 23 0.0005 33.1 18.7 43 116-158 2-44 (143)
113 PF07106 TBPIP: Tat binding pr 88.0 8.5 0.00018 36.4 11.9 94 77-184 57-152 (169)
114 PF11932 DUF3450: Protein of u 87.8 28 0.00061 35.0 16.1 94 240-333 50-148 (251)
115 COG0419 SbcC ATPase involved i 87.7 69 0.0015 38.3 29.7 25 107-131 171-195 (908)
116 KOG4302 Microtubule-associated 87.6 5.5 0.00012 45.9 11.9 147 173-319 31-191 (660)
117 KOG1962 B-cell receptor-associ 87.4 6.7 0.00015 39.4 11.0 61 246-306 151-211 (216)
118 PF10473 CENP-F_leu_zip: Leuci 87.3 26 0.00056 33.0 18.5 126 199-346 1-133 (140)
119 PF10481 CENP-F_N: Cenp-F N-te 87.0 42 0.00091 35.0 17.0 18 202-219 15-32 (307)
120 PF08614 ATG16: Autophagy prot 87.0 6.9 0.00015 38.0 10.8 63 239-301 95-157 (194)
121 PRK10884 SH3 domain-containing 86.5 8.8 0.00019 38.1 11.3 35 271-305 129-163 (206)
122 PF03962 Mnd1: Mnd1 family; I 85.9 14 0.00031 36.1 12.3 25 288-312 103-127 (188)
123 PF09730 BicD: Microtubule-ass 85.8 74 0.0016 37.4 19.8 67 250-316 395-461 (717)
124 KOG0999 Microtubule-associated 85.6 72 0.0016 36.4 29.9 76 89-164 4-79 (772)
125 TIGR03007 pepcterm_ChnLen poly 85.3 63 0.0014 35.4 22.1 11 88-98 132-142 (498)
126 PF12329 TMF_DNA_bd: TATA elem 85.2 9.8 0.00021 31.8 9.3 64 241-304 7-70 (74)
127 KOG0971 Microtubule-associated 85.1 96 0.0021 37.4 22.0 23 9-31 153-175 (1243)
128 PF05622 HOOK: HOOK protein; 84.4 0.3 6.5E-06 56.3 0.0 61 247-307 364-424 (713)
129 COG4026 Uncharacterized protei 84.4 7 0.00015 39.5 9.4 67 243-309 139-205 (290)
130 PF13949 ALIX_LYPXL_bnd: ALIX 84.1 51 0.0011 33.4 27.4 40 281-320 241-280 (296)
131 COG3883 Uncharacterized protei 84.1 56 0.0012 33.9 24.5 65 95-159 33-97 (265)
132 PF10146 zf-C4H2: Zinc finger- 83.5 10 0.00022 38.4 10.3 70 93-162 32-101 (230)
133 PF10234 Cluap1: Clusterin-ass 83.5 22 0.00048 36.8 12.9 58 252-309 203-260 (267)
134 PF04156 IncA: IncA protein; 83.4 37 0.0008 32.4 13.8 20 290-309 125-144 (191)
135 PF04912 Dynamitin: Dynamitin 83.4 70 0.0015 34.4 22.4 139 173-323 208-364 (388)
136 KOG0978 E3 ubiquitin ligase in 83.3 1E+02 0.0022 36.2 21.3 275 39-338 123-407 (698)
137 PF06005 DUF904: Protein of un 83.1 15 0.00032 30.8 9.4 38 267-304 32-69 (72)
138 PF10234 Cluap1: Clusterin-ass 82.3 30 0.00066 35.8 13.4 79 241-319 171-249 (267)
139 PRK15422 septal ring assembly 82.2 8.9 0.00019 32.7 7.8 53 94-146 19-71 (79)
140 PF03962 Mnd1: Mnd1 family; I 81.7 17 0.00036 35.6 10.8 68 78-145 54-127 (188)
141 PF13514 AAA_27: AAA domain 81.6 1.4E+02 0.003 36.6 27.1 40 247-286 890-929 (1111)
142 PF02403 Seryl_tRNA_N: Seryl-t 81.3 25 0.00053 30.7 10.9 25 242-266 39-63 (108)
143 PF12325 TMF_TATA_bd: TATA ele 81.1 19 0.00042 32.9 10.3 72 91-162 28-109 (120)
144 PF06005 DUF904: Protein of un 81.0 25 0.00055 29.4 10.1 12 279-290 51-62 (72)
145 KOG0995 Centromere-associated 80.9 1.1E+02 0.0024 35.0 30.8 38 179-216 313-350 (581)
146 PF04111 APG6: Autophagy prote 80.8 25 0.00054 37.0 12.5 111 245-379 49-159 (314)
147 PF08317 Spc7: Spc7 kinetochor 80.7 79 0.0017 33.2 23.3 60 247-306 210-269 (325)
148 COG4477 EzrA Negative regulato 80.5 1.1E+02 0.0024 34.8 21.2 156 89-266 251-409 (570)
149 PF06818 Fez1: Fez1; InterPro 79.9 32 0.00069 34.3 12.1 95 206-320 11-105 (202)
150 PRK11281 hypothetical protein; 79.9 1.6E+02 0.0036 36.4 21.5 29 172-200 119-147 (1113)
151 PF10168 Nup88: Nuclear pore c 79.6 1.3E+02 0.0028 35.5 18.8 10 171-180 627-636 (717)
152 PF15035 Rootletin: Ciliary ro 79.4 51 0.0011 32.2 13.3 103 252-371 66-168 (182)
153 PF13166 AAA_13: AAA domain 78.9 1.3E+02 0.0028 34.5 21.7 6 67-72 242-247 (712)
154 PF07889 DUF1664: Protein of u 78.8 35 0.00077 31.6 11.3 51 248-298 70-120 (126)
155 COG5185 HEC1 Protein involved 78.3 1.2E+02 0.0027 34.0 26.0 37 279-315 485-521 (622)
156 PF04728 LPP: Lipoprotein leuc 78.2 20 0.00044 28.8 8.2 44 255-298 5-48 (56)
157 KOG0804 Cytoplasmic Zn-finger 78.2 90 0.0019 34.8 15.7 95 249-355 364-458 (493)
158 PF03999 MAP65_ASE1: Microtubu 78.0 0.68 1.5E-05 52.7 -0.1 66 245-310 227-301 (619)
159 PRK10884 SH3 domain-containing 77.7 16 0.00034 36.4 9.3 29 89-117 89-117 (206)
160 PF13514 AAA_27: AAA domain 77.7 1.8E+02 0.0039 35.6 28.7 35 352-386 971-1010(1111)
161 PRK10929 putative mechanosensi 77.5 1.9E+02 0.0041 35.8 22.0 98 85-191 22-119 (1109)
162 COG2433 Uncharacterized conser 77.4 69 0.0015 36.9 15.0 77 244-331 441-520 (652)
163 KOG0963 Transcription factor/C 76.8 1.5E+02 0.0033 34.2 21.7 162 90-302 193-358 (629)
164 KOG0979 Structural maintenance 76.2 1.9E+02 0.0042 35.2 25.7 32 11-43 50-89 (1072)
165 PF04949 Transcrip_act: Transc 76.2 74 0.0016 30.4 12.7 52 248-299 86-137 (159)
166 PF15619 Lebercilin: Ciliary p 76.1 84 0.0018 31.0 21.1 38 275-312 119-156 (194)
167 PF13870 DUF4201: Domain of un 75.4 76 0.0017 30.2 19.3 26 331-356 141-166 (177)
168 TIGR02894 DNA_bind_RsfA transc 75.2 48 0.001 32.0 11.4 52 274-325 104-155 (161)
169 PF09304 Cortex-I_coil: Cortex 74.2 68 0.0015 29.0 12.5 39 252-290 36-74 (107)
170 KOG0946 ER-Golgi vesicle-tethe 74.1 2E+02 0.0044 34.4 23.5 46 92-137 670-715 (970)
171 KOG2751 Beclin-like protein [S 73.8 1.5E+02 0.0033 32.8 18.8 92 175-303 177-268 (447)
172 PF11932 DUF3450: Protein of u 73.5 1.1E+02 0.0023 30.9 15.0 25 175-199 125-149 (251)
173 TIGR01000 bacteriocin_acc bact 73.5 1.5E+02 0.0032 32.5 21.4 24 89-112 100-123 (457)
174 PF04645 DUF603: Protein of un 73.4 24 0.00052 34.4 8.9 71 245-328 104-179 (181)
175 PF09787 Golgin_A5: Golgin sub 72.1 1.7E+02 0.0037 32.8 25.9 29 248-276 276-304 (511)
176 PRK05431 seryl-tRNA synthetase 72.0 21 0.00045 39.1 9.4 29 278-306 70-98 (425)
177 PF06818 Fez1: Fez1; InterPro 71.8 1.1E+02 0.0025 30.5 15.0 40 284-323 134-173 (202)
178 PF09726 Macoilin: Transmembra 71.3 2.2E+02 0.0047 33.5 26.0 62 262-323 589-650 (697)
179 PF03148 Tektin: Tektin family 71.0 1.6E+02 0.0034 31.9 24.6 45 220-264 246-290 (384)
180 PF05531 NPV_P10: Nucleopolyhe 71.0 22 0.00047 30.2 7.1 24 258-281 9-32 (75)
181 TIGR01005 eps_transp_fam exopo 70.9 2.1E+02 0.0046 33.3 21.3 56 87-142 164-222 (754)
182 PF04728 LPP: Lipoprotein leuc 70.9 22 0.00048 28.5 6.8 45 248-292 5-49 (56)
183 PF01576 Myosin_tail_1: Myosin 70.6 1.4 3E-05 52.2 0.0 95 233-327 715-824 (859)
184 KOG4643 Uncharacterized coiled 70.5 2.6E+02 0.0057 34.2 27.4 53 251-303 479-531 (1195)
185 PF14197 Cep57_CLD_2: Centroso 70.3 61 0.0013 26.9 9.9 45 262-306 7-51 (69)
186 KOG3647 Predicted coiled-coil 69.5 1.5E+02 0.0033 31.1 15.9 33 274-306 168-200 (338)
187 PF05622 HOOK: HOOK protein; 69.1 1.6 3.4E-05 50.5 0.0 7 63-69 297-303 (713)
188 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.8 94 0.002 28.4 15.5 46 275-320 60-105 (132)
189 PRK10929 putative mechanosensi 68.2 3.1E+02 0.0067 34.1 28.1 20 174-193 144-163 (1109)
190 PRK10698 phage shock protein P 67.9 47 0.001 33.2 10.2 82 91-193 104-185 (222)
191 PF02183 HALZ: Homeobox associ 67.7 17 0.00038 27.7 5.4 38 265-302 3-40 (45)
192 TIGR00634 recN DNA repair prot 67.6 2.2E+02 0.0047 32.2 24.3 6 77-82 107-112 (563)
193 TIGR00414 serS seryl-tRNA synt 67.5 38 0.00083 37.0 10.2 28 277-304 72-99 (418)
194 PF12711 Kinesin-relat_1: Kine 67.0 43 0.00094 29.1 8.3 37 180-216 2-42 (86)
195 PF07200 Mod_r: Modifier of ru 67.0 1.1E+02 0.0023 28.3 14.7 19 341-362 126-144 (150)
196 COG3074 Uncharacterized protei 66.9 48 0.001 27.9 8.2 50 95-144 20-69 (79)
197 PLN02320 seryl-tRNA synthetase 66.7 31 0.00067 38.8 9.4 18 207-224 69-86 (502)
198 PF11559 ADIP: Afadin- and alp 66.7 1.1E+02 0.0024 28.3 13.7 51 233-283 53-103 (151)
199 PRK10869 recombination and rep 66.3 2.4E+02 0.0051 32.1 24.3 65 119-188 155-219 (553)
200 PF07889 DUF1664: Protein of u 66.2 95 0.0021 28.8 11.0 17 235-251 64-80 (126)
201 PF05531 NPV_P10: Nucleopolyhe 66.1 17 0.00037 30.8 5.5 47 241-287 13-62 (75)
202 TIGR02338 gimC_beta prefoldin, 66.1 95 0.0021 27.4 11.2 10 201-210 37-46 (110)
203 PF15397 DUF4618: Domain of un 66.0 1.7E+02 0.0037 30.3 16.5 128 201-348 23-158 (258)
204 KOG0976 Rho/Rac1-interacting s 65.6 3E+02 0.0066 33.1 28.9 33 265-297 282-314 (1265)
205 PRK10869 recombination and rep 65.5 2.4E+02 0.0053 32.0 24.3 72 297-368 308-381 (553)
206 PF10392 COG5: Golgi transport 65.4 1.1E+02 0.0024 27.9 11.9 74 237-310 31-115 (132)
207 PF15290 Syntaphilin: Golgi-lo 64.5 1E+02 0.0023 32.3 11.9 50 149-219 89-138 (305)
208 cd09234 V_HD-PTP_like Protein- 64.4 2E+02 0.0042 30.4 28.9 19 201-219 194-212 (337)
209 PF05377 FlaC_arch: Flagella a 63.8 26 0.00056 28.1 5.8 34 264-297 4-37 (55)
210 PF06103 DUF948: Bacterial pro 63.7 73 0.0016 26.9 9.2 56 251-306 31-86 (90)
211 smart00030 CLb CLUSTERIN Beta 63.6 1.6E+02 0.0034 29.6 12.5 76 264-376 33-108 (206)
212 KOG0243 Kinesin-like protein [ 63.4 3.6E+02 0.0078 33.2 27.9 73 305-377 717-789 (1041)
213 KOG0612 Rho-associated, coiled 63.3 3.9E+02 0.0084 33.5 29.6 16 340-355 701-716 (1317)
214 PF10498 IFT57: Intra-flagella 63.3 1.9E+02 0.0041 31.3 14.2 54 264-317 263-316 (359)
215 PLN03229 acetyl-coenzyme A car 63.2 3.2E+02 0.0069 32.5 21.0 19 85-103 454-472 (762)
216 PF09789 DUF2353: Uncharacteri 63.2 2.1E+02 0.0046 30.5 20.7 13 330-342 274-286 (319)
217 PF05384 DegS: Sensor protein 63.0 1.5E+02 0.0032 28.6 15.3 35 293-327 96-130 (159)
218 KOG4603 TBP-1 interacting prot 63.0 1.3E+02 0.0028 29.6 11.5 6 343-348 163-168 (201)
219 PF04782 DUF632: Protein of un 62.7 2.1E+02 0.0046 30.3 20.5 154 197-371 91-255 (312)
220 PF13870 DUF4201: Domain of un 62.5 1.4E+02 0.0031 28.3 21.4 58 248-305 79-136 (177)
221 KOG4302 Microtubule-associated 62.1 3.2E+02 0.0068 32.1 29.9 39 125-163 100-138 (660)
222 KOG1962 B-cell receptor-associ 62.0 1.8E+02 0.004 29.3 13.3 63 265-327 149-211 (216)
223 PF04949 Transcrip_act: Transc 61.8 1.5E+02 0.0033 28.4 13.9 39 280-318 83-121 (159)
224 PRK15422 septal ring assembly 61.6 99 0.0021 26.6 9.3 25 276-300 48-72 (79)
225 PF01576 Myosin_tail_1: Myosin 61.5 2.7 5.8E-05 49.9 0.0 63 241-303 182-244 (859)
226 TIGR03545 conserved hypothetic 61.2 1.8E+02 0.004 33.2 14.3 24 299-322 289-312 (555)
227 PF10805 DUF2730: Protein of u 61.2 1.1E+02 0.0024 27.1 10.2 63 243-305 32-96 (106)
228 PF12329 TMF_DNA_bd: TATA elem 60.8 85 0.0018 26.2 8.8 44 250-293 23-66 (74)
229 PRK03947 prefoldin subunit alp 60.6 1.3E+02 0.0028 27.5 10.9 26 261-286 102-127 (140)
230 PF05529 Bap31: B-cell recepto 60.1 60 0.0013 31.3 9.1 38 274-311 154-191 (192)
231 PF06008 Laminin_I: Laminin Do 60.1 2E+02 0.0043 29.1 28.0 65 90-154 42-106 (264)
232 KOG0239 Kinesin (KAR3 subfamil 60.0 3.4E+02 0.0074 31.8 18.4 46 269-314 250-295 (670)
233 PF05546 She9_MDM33: She9 / Md 59.9 72 0.0016 32.0 9.6 84 263-351 5-101 (207)
234 COG3352 FlaC Putative archaeal 59.2 1.1E+02 0.0024 29.4 10.1 46 239-284 58-103 (157)
235 PF06009 Laminin_II: Laminin D 59.1 3.1 6.7E-05 38.4 0.0 84 246-329 24-110 (138)
236 PLN03229 acetyl-coenzyme A car 58.3 3.8E+02 0.0083 31.9 24.2 22 85-106 428-449 (762)
237 PF11559 ADIP: Afadin- and alp 58.2 1.6E+02 0.0034 27.3 12.8 13 202-214 35-47 (151)
238 COG2433 Uncharacterized conser 58.0 1.2E+02 0.0027 34.9 12.0 48 86-133 415-462 (652)
239 PRK03947 prefoldin subunit alp 58.0 1.5E+02 0.0032 27.0 12.6 31 267-297 101-131 (140)
240 PRK09973 putative outer membra 57.4 1E+02 0.0023 26.7 8.9 56 254-318 25-80 (85)
241 KOG0995 Centromere-associated 57.0 3.6E+02 0.0077 31.1 29.4 13 335-347 538-550 (581)
242 PRK05431 seryl-tRNA synthetase 57.0 61 0.0013 35.5 9.4 15 248-262 44-58 (425)
243 PF01920 Prefoldin_2: Prefoldi 56.5 1.2E+02 0.0027 25.6 10.5 27 276-302 71-97 (106)
244 PF15450 DUF4631: Domain of un 56.3 3.5E+02 0.0076 30.8 22.7 235 90-354 269-508 (531)
245 PHA03395 p10 fibrous body prot 55.4 33 0.00072 29.9 5.6 39 247-285 19-60 (87)
246 PF12958 DUF3847: Protein of u 55.3 1.3E+02 0.0028 26.2 9.2 28 331-358 58-85 (86)
247 PLN02678 seryl-tRNA synthetase 55.2 64 0.0014 35.8 9.2 14 203-216 31-44 (448)
248 KOG0288 WD40 repeat protein Ti 55.0 3.3E+02 0.0071 30.3 14.1 61 286-346 88-151 (459)
249 PF10473 CENP-F_leu_zip: Leuci 54.9 1.9E+02 0.0041 27.3 16.8 65 246-310 52-116 (140)
250 PF06657 Cep57_MT_bd: Centroso 54.7 1.1E+02 0.0024 25.9 8.6 56 260-315 17-77 (79)
251 KOG0239 Kinesin (KAR3 subfamil 54.7 4.2E+02 0.009 31.1 21.0 42 261-302 228-269 (670)
252 cd07657 F-BAR_Fes_Fer The F-BA 53.9 2.5E+02 0.0054 28.4 16.3 85 201-297 68-156 (237)
253 PLN02678 seryl-tRNA synthetase 53.9 81 0.0018 35.0 9.8 63 244-306 38-103 (448)
254 cd00179 SynN Syntaxin N-termin 53.7 1.7E+02 0.0037 26.4 13.2 25 295-319 88-112 (151)
255 TIGR02338 gimC_beta prefoldin, 53.4 1.6E+02 0.0035 26.0 11.3 7 209-215 11-17 (110)
256 KOG0980 Actin-binding protein 53.2 4.9E+02 0.011 31.6 29.4 21 329-349 516-536 (980)
257 KOG3647 Predicted coiled-coil 52.8 3E+02 0.0065 29.0 16.3 78 262-347 114-191 (338)
258 cd00179 SynN Syntaxin N-termin 52.6 1.8E+02 0.0039 26.3 13.3 49 330-383 83-131 (151)
259 PF10498 IFT57: Intra-flagella 52.1 3.4E+02 0.0073 29.4 15.2 85 239-330 259-349 (359)
260 TIGR02449 conserved hypothetic 52.1 74 0.0016 26.3 6.9 47 90-136 4-50 (65)
261 cd07653 F-BAR_CIP4-like The F- 51.7 2.5E+02 0.0055 27.8 20.0 24 353-376 193-216 (251)
262 PHA03395 p10 fibrous body prot 51.6 73 0.0016 27.8 7.0 48 258-305 9-59 (87)
263 PRK11546 zraP zinc resistance 51.5 53 0.0011 31.1 6.8 18 289-306 90-107 (143)
264 TIGR00020 prfB peptide chain r 51.1 2.1E+02 0.0045 31.1 12.1 98 248-346 2-106 (364)
265 PF05557 MAD: Mitotic checkpoi 51.1 1.4E+02 0.003 34.9 11.6 14 61-74 337-350 (722)
266 PHA03011 hypothetical protein; 51.1 1.2E+02 0.0026 27.3 8.5 58 246-310 57-114 (120)
267 PF03993 DUF349: Domain of Unk 51.0 1.3E+02 0.0028 24.2 9.0 56 291-350 12-68 (77)
268 KOG2264 Exostosin EXT1L [Signa 50.0 1.2E+02 0.0025 35.0 10.1 58 246-303 93-150 (907)
269 KOG0244 Kinesin-like protein [ 49.8 2.6E+02 0.0056 33.9 13.3 54 91-144 328-386 (913)
270 KOG4809 Rab6 GTPase-interactin 49.3 4.7E+02 0.01 30.2 23.5 10 339-348 442-451 (654)
271 PTZ00464 SNF-7-like protein; P 48.8 2.5E+02 0.0054 28.1 11.5 28 89-116 21-48 (211)
272 TIGR00414 serS seryl-tRNA synt 48.5 99 0.0021 33.8 9.4 13 204-216 29-41 (418)
273 PRK15396 murein lipoprotein; P 48.4 1.1E+02 0.0025 26.0 7.7 45 255-299 27-71 (78)
274 PRK09343 prefoldin subunit bet 48.1 2.1E+02 0.0046 25.9 11.4 12 206-217 12-23 (121)
275 PF06156 DUF972: Protein of un 47.8 94 0.002 27.9 7.5 36 265-300 20-55 (107)
276 TIGR02231 conserved hypothetic 47.1 1.8E+02 0.004 32.4 11.4 10 206-215 72-81 (525)
277 PF06632 XRCC4: DNA double-str 47.1 2.5E+02 0.0054 30.2 11.8 72 91-162 128-207 (342)
278 KOG0999 Microtubule-associated 46.7 5.2E+02 0.011 29.9 24.9 26 473-498 357-382 (772)
279 PTZ00446 vacuolar sorting prot 46.5 3.1E+02 0.0066 27.2 14.5 40 173-212 126-175 (191)
280 TIGR02894 DNA_bind_RsfA transc 46.4 2.8E+02 0.0062 26.8 12.9 93 201-294 57-152 (161)
281 PF07795 DUF1635: Protein of u 46.4 1.1E+02 0.0024 30.8 8.5 36 266-301 25-60 (214)
282 PF05529 Bap31: B-cell recepto 46.0 1.2E+02 0.0026 29.2 8.6 33 250-282 158-190 (192)
283 PF03961 DUF342: Protein of un 45.3 1.5E+02 0.0032 32.5 10.2 24 252-275 333-356 (451)
284 PF07200 Mod_r: Modifier of ru 45.3 2.5E+02 0.0054 25.8 12.9 113 251-369 32-144 (150)
285 PF06810 Phage_GP20: Phage min 45.3 2.4E+02 0.0052 26.7 10.3 12 371-383 113-124 (155)
286 PF15233 SYCE1: Synaptonemal c 44.9 1.7E+02 0.0038 27.4 8.8 62 94-155 7-68 (134)
287 PRK00578 prfB peptide chain re 44.8 3.1E+02 0.0067 29.8 12.2 55 293-348 54-108 (367)
288 cd00632 Prefoldin_beta Prefold 43.9 90 0.0019 27.3 6.8 13 201-213 33-45 (105)
289 PF05278 PEARLI-4: Arabidopsis 43.9 4E+02 0.0087 27.8 16.8 58 248-305 202-259 (269)
290 PF15290 Syntaphilin: Golgi-lo 43.8 2.6E+02 0.0056 29.5 10.8 80 81-162 51-137 (305)
291 PF12795 MscS_porin: Mechanose 43.4 3.5E+02 0.0076 27.0 21.7 35 172-206 76-110 (240)
292 cd07665 BAR_SNX1 The Bin/Amphi 43.3 3.7E+02 0.0081 27.3 21.7 163 178-356 26-206 (234)
293 PF06705 SF-assemblin: SF-asse 43.2 3.6E+02 0.0078 27.1 24.2 14 179-192 39-52 (247)
294 PF14282 FlxA: FlxA-like prote 43.0 1.6E+02 0.0035 26.1 8.2 53 91-143 17-73 (106)
295 TIGR02977 phageshock_pspA phag 42.4 3.5E+02 0.0076 26.7 13.1 22 173-194 165-186 (219)
296 cd00632 Prefoldin_beta Prefold 42.4 2.3E+02 0.005 24.7 13.6 7 210-216 8-14 (105)
297 COG3096 MukB Uncharacterized p 42.0 7E+02 0.015 30.1 31.2 91 68-158 760-880 (1480)
298 PF08172 CASP_C: CASP C termin 41.4 1.3E+02 0.0028 30.8 8.4 55 248-302 81-135 (248)
299 PLN02320 seryl-tRNA synthetase 41.4 1.5E+02 0.0033 33.4 9.6 32 101-132 94-125 (502)
300 TIGR03752 conj_TIGR03752 integ 41.1 2.1E+02 0.0045 32.2 10.3 25 270-294 83-107 (472)
301 PRK14160 heat shock protein Gr 40.9 3.4E+02 0.0073 27.3 11.0 48 276-323 56-103 (211)
302 PF01920 Prefoldin_2: Prefoldi 40.9 2.2E+02 0.0048 24.0 11.0 33 276-308 64-96 (106)
303 PF14942 Muted: Organelle biog 40.7 3.2E+02 0.007 25.8 14.1 21 199-219 31-51 (145)
304 PF03961 DUF342: Protein of un 40.5 2.1E+02 0.0045 31.4 10.4 76 85-160 326-407 (451)
305 cd08915 V_Alix_like Protein-in 40.2 4.6E+02 0.01 27.5 27.2 34 279-312 289-322 (342)
306 TIGR01843 type_I_hlyD type I s 40.1 4.6E+02 0.01 27.5 22.7 18 89-106 84-101 (423)
307 PF03670 UPF0184: Uncharacteri 39.6 1.6E+02 0.0035 25.5 7.4 44 101-144 27-70 (83)
308 PF09766 FimP: Fms-interacting 39.2 5.1E+02 0.011 27.7 13.3 17 326-342 195-211 (355)
309 COG3937 Uncharacterized conser 38.8 2.3E+02 0.0049 25.8 8.4 33 175-207 18-51 (108)
310 PF09738 DUF2051: Double stran 38.8 4.9E+02 0.011 27.6 12.3 7 375-381 174-180 (302)
311 TIGR01005 eps_transp_fam exopo 38.6 7E+02 0.015 29.1 25.1 26 91-116 185-210 (754)
312 PF15456 Uds1: Up-regulated Du 38.6 3.2E+02 0.0069 25.2 10.7 76 247-323 23-109 (124)
313 PF09738 DUF2051: Double stran 38.5 3.4E+02 0.0073 28.7 11.1 71 251-321 82-152 (302)
314 cd09235 V_Alix Middle V-domain 38.3 5.1E+02 0.011 27.4 26.9 18 201-218 194-211 (339)
315 KOG2264 Exostosin EXT1L [Signa 37.9 1.4E+02 0.0031 34.3 8.5 66 102-167 81-153 (907)
316 PF12777 MT: Microtubule-bindi 37.9 5.2E+02 0.011 27.4 13.4 48 299-346 72-124 (344)
317 TIGR02492 flgK_ends flagellar 37.8 1.9E+02 0.0042 30.2 9.3 57 250-309 145-205 (322)
318 PRK10698 phage shock protein P 37.8 4.3E+02 0.0093 26.4 13.7 19 198-216 52-70 (222)
319 PF10212 TTKRSYEDQ: Predicted 37.7 6.2E+02 0.013 28.9 13.4 27 275-301 488-514 (518)
320 PF14915 CCDC144C: CCDC144C pr 37.6 5.3E+02 0.011 27.4 26.9 81 180-261 157-243 (305)
321 PF13600 DUF4140: N-terminal d 37.5 1.2E+02 0.0026 26.1 6.6 48 75-122 50-99 (104)
322 PRK02119 hypothetical protein; 37.5 2.4E+02 0.0053 23.5 8.4 47 252-298 8-54 (73)
323 TIGR02231 conserved hypothetic 37.5 2.7E+02 0.0058 31.1 10.8 12 347-358 200-211 (525)
324 PF12777 MT: Microtubule-bindi 37.5 3.3E+02 0.0071 28.9 11.0 26 91-116 20-45 (344)
325 PF08826 DMPK_coil: DMPK coile 37.4 2.3E+02 0.0049 23.1 8.2 32 252-283 24-55 (61)
326 COG0172 SerS Seryl-tRNA synthe 37.3 1.6E+02 0.0035 32.6 8.8 27 278-304 72-98 (429)
327 PF06717 DUF1202: Protein of u 37.3 1E+02 0.0022 32.4 6.8 35 251-285 143-177 (308)
328 KOG3850 Predicted membrane pro 37.0 6.1E+02 0.013 28.0 14.0 27 95-121 262-288 (455)
329 PRK13729 conjugal transfer pil 37.0 76 0.0017 35.5 6.3 46 259-304 75-120 (475)
330 PF06419 COG6: Conserved oligo 36.8 5.2E+02 0.011 29.8 13.2 92 232-323 38-139 (618)
331 PF06156 DUF972: Protein of un 36.7 2.4E+02 0.0052 25.3 8.4 9 293-301 74-82 (107)
332 PF11180 DUF2968: Protein of u 36.7 4.4E+02 0.0096 26.2 11.3 17 179-195 173-189 (192)
333 PF14931 IFT20: Intraflagellar 36.4 3.4E+02 0.0074 24.9 9.7 38 183-220 11-49 (120)
334 PRK05683 flgK flagellar hook-a 36.0 5.8E+02 0.013 29.9 13.5 75 237-314 132-209 (676)
335 PF15066 CAGE1: Cancer-associa 36.0 6.9E+02 0.015 28.3 21.3 163 102-311 364-526 (527)
336 PF09730 BicD: Microtubule-ass 36.0 8.1E+02 0.018 29.1 30.1 53 310-362 420-482 (717)
337 TIGR01069 mutS2 MutS2 family p 35.9 8E+02 0.017 29.2 14.8 19 361-379 734-752 (771)
338 cd09234 V_HD-PTP_like Protein- 35.8 5.5E+02 0.012 27.1 19.9 68 253-320 258-325 (337)
339 PRK10636 putative ABC transpor 35.6 1.4E+02 0.0031 34.2 8.5 30 276-305 600-629 (638)
340 cd07623 BAR_SNX1_2 The Bin/Amp 35.6 4.5E+02 0.0098 26.1 21.3 162 179-356 17-196 (224)
341 PF07862 Nif11: Nitrogen fixat 35.3 38 0.00082 25.5 2.7 44 338-381 3-46 (49)
342 TIGR03017 EpsF chain length de 35.2 5.9E+02 0.013 27.3 21.6 10 87-96 141-150 (444)
343 TIGR02449 conserved hypothetic 35.2 2.6E+02 0.0056 23.1 8.8 25 105-129 33-57 (65)
344 PRK04406 hypothetical protein; 35.1 2.7E+02 0.0059 23.4 8.4 45 253-297 11-55 (75)
345 KOG4571 Activating transcripti 35.0 4.6E+02 0.01 27.7 11.2 45 117-161 244-288 (294)
346 PF09755 DUF2046: Uncharacteri 35.0 5.9E+02 0.013 27.2 24.5 42 89-137 23-64 (310)
347 PF03999 MAP65_ASE1: Microtubu 34.6 30 0.00065 39.6 2.9 22 365-386 402-423 (619)
348 KOG0980 Actin-binding protein 34.5 9.3E+02 0.02 29.4 19.9 98 202-302 390-494 (980)
349 PHA01750 hypothetical protein 34.5 94 0.002 25.9 4.9 27 276-302 44-70 (75)
350 smart00502 BBC B-Box C-termina 34.3 2.9E+02 0.0064 23.5 12.6 88 249-339 3-90 (127)
351 PRK09239 chorismate mutase; Pr 34.3 3.3E+02 0.0072 24.1 9.7 37 268-304 11-47 (104)
352 PF08647 BRE1: BRE1 E3 ubiquit 34.2 3.1E+02 0.0068 23.8 11.8 51 272-322 29-79 (96)
353 TIGR01554 major_cap_HK97 phage 34.2 2.2E+02 0.0048 30.2 9.2 18 250-267 3-20 (378)
354 PF03670 UPF0184: Uncharacteri 34.1 2.5E+02 0.0054 24.4 7.6 42 264-305 30-71 (83)
355 PF02344 Myc-LZ: Myc leucine z 34.1 66 0.0014 23.1 3.4 20 198-217 1-20 (32)
356 PRK13729 conjugal transfer pil 33.8 1.7E+02 0.0037 32.9 8.3 45 262-306 71-115 (475)
357 PF05557 MAD: Mitotic checkpoi 33.8 39 0.00084 39.3 3.6 21 340-360 621-642 (722)
358 PF14282 FlxA: FlxA-like prote 33.7 2.2E+02 0.0048 25.2 7.7 20 248-267 21-40 (106)
359 PRK15396 murein lipoprotein; P 33.6 2E+02 0.0043 24.6 6.9 45 248-292 27-71 (78)
360 PF15294 Leu_zip: Leucine zipp 33.5 5.9E+02 0.013 26.8 15.2 149 178-329 90-266 (278)
361 PF13747 DUF4164: Domain of un 33.4 3.2E+02 0.0069 23.6 11.1 51 249-299 35-85 (89)
362 cd09238 V_Alix_like_1 Protein- 33.4 6.1E+02 0.013 26.9 27.2 19 201-219 198-216 (339)
363 cd07627 BAR_Vps5p The Bin/Amph 33.3 4.8E+02 0.01 25.7 25.7 18 331-348 190-210 (216)
364 PF04102 SlyX: SlyX; InterPro 33.1 2.6E+02 0.0056 22.9 7.4 46 256-301 7-52 (69)
365 PF08826 DMPK_coil: DMPK coile 33.0 2.7E+02 0.0059 22.7 9.3 44 111-154 15-58 (61)
366 PF02183 HALZ: Homeobox associ 32.9 2E+02 0.0043 22.0 6.2 22 270-291 15-36 (45)
367 PF15358 TSKS: Testis-specific 32.9 7.4E+02 0.016 27.7 13.4 104 84-196 102-217 (558)
368 PRK09973 putative outer membra 32.7 3.4E+02 0.0073 23.7 8.3 55 247-301 25-81 (85)
369 TIGR03545 conserved hypothetic 32.5 3.1E+02 0.0067 31.4 10.3 21 334-360 283-303 (555)
370 PRK09841 cryptic autophosphory 32.5 8.7E+02 0.019 28.4 19.0 12 204-215 310-321 (726)
371 PF10267 Tmemb_cc2: Predicted 32.4 7.2E+02 0.016 27.4 14.3 183 10-195 131-328 (395)
372 cd07664 BAR_SNX2 The Bin/Amphi 32.3 5.5E+02 0.012 26.0 21.8 155 177-345 25-197 (234)
373 KOG0288 WD40 repeat protein Ti 32.3 7.5E+02 0.016 27.6 13.0 41 253-293 34-74 (459)
374 PF15188 CCDC-167: Coiled-coil 32.3 2.6E+02 0.0056 24.3 7.5 55 248-302 7-64 (85)
375 PF14662 CCDC155: Coiled-coil 32.1 5.3E+02 0.011 25.8 25.4 21 241-261 111-131 (193)
376 PF06698 DUF1192: Protein of u 32.0 1.1E+02 0.0024 24.8 4.9 28 172-216 19-46 (59)
377 COG4913 Uncharacterized protei 32.0 3.8E+02 0.0083 32.0 10.8 101 246-348 616-725 (1104)
378 PF05082 Rop-like: Rop-like; 31.8 1.5E+02 0.0032 24.7 5.7 60 248-307 4-63 (66)
379 PRK10803 tol-pal system protei 31.6 2.4E+02 0.0052 28.8 8.6 35 266-300 67-101 (263)
380 PF05103 DivIVA: DivIVA protei 31.5 33 0.0007 30.6 2.0 18 341-358 113-130 (131)
381 PF03904 DUF334: Domain of unk 31.4 5.9E+02 0.013 26.1 14.8 17 206-222 44-60 (230)
382 cd07686 F-BAR_Fer The F-BAR (F 31.4 5.8E+02 0.013 26.0 18.3 136 201-348 68-222 (234)
383 PF04136 Sec34: Sec34-like fam 31.2 4.6E+02 0.01 24.8 13.7 102 254-356 15-119 (157)
384 PHA03386 P10 fibrous body prot 30.7 2.6E+02 0.0057 24.7 7.3 22 259-280 11-32 (94)
385 PF05483 SCP-1: Synaptonemal c 30.5 9.9E+02 0.021 28.4 32.0 108 241-348 589-709 (786)
386 PHA03386 P10 fibrous body prot 30.4 1.4E+02 0.003 26.4 5.6 13 247-259 20-32 (94)
387 PRK00578 prfB peptide chain re 30.3 6.6E+02 0.014 27.3 11.9 45 172-216 21-67 (367)
388 PF06810 Phage_GP20: Phage min 30.0 4.9E+02 0.011 24.7 12.7 18 365-382 100-117 (155)
389 PF05010 TACC: Transforming ac 29.9 5.8E+02 0.013 25.6 24.6 13 89-101 5-17 (207)
390 COG4372 Uncharacterized protei 29.9 8.1E+02 0.018 27.2 29.1 29 117-145 98-126 (499)
391 COG0172 SerS Seryl-tRNA synthe 29.8 2.4E+02 0.0053 31.3 8.6 63 92-154 35-101 (429)
392 PF11629 Mst1_SARAH: C termina 29.8 1.9E+02 0.004 22.8 5.6 42 172-232 6-47 (49)
393 PF14712 Snapin_Pallidin: Snap 29.7 3.4E+02 0.0073 22.8 10.4 17 293-309 62-78 (92)
394 PF07851 TMPIT: TMPIT-like pro 29.6 3.8E+02 0.0082 28.8 9.8 51 111-161 8-58 (330)
395 KOG4005 Transcription factor X 29.6 6.5E+02 0.014 26.1 11.9 67 252-318 89-156 (292)
396 PRK10361 DNA recombination pro 29.5 8.6E+02 0.019 27.5 20.9 12 372-383 233-244 (475)
397 PF05008 V-SNARE: Vesicle tran 29.4 2.6E+02 0.0057 22.7 7.0 55 88-142 20-75 (79)
398 PF02050 FliJ: Flagellar FliJ 29.2 3.4E+02 0.0074 22.7 12.1 93 247-344 6-103 (123)
399 PF10224 DUF2205: Predicted co 29.2 3.4E+02 0.0074 23.3 7.6 27 258-284 21-47 (80)
400 PRK08871 flgK flagellar hook-a 29.1 2.1E+02 0.0045 33.2 8.3 39 275-313 170-208 (626)
401 PF08581 Tup_N: Tup N-terminal 28.9 3.7E+02 0.008 23.0 9.8 59 248-306 6-64 (79)
402 PF06717 DUF1202: Protein of u 28.8 2E+02 0.0044 30.3 7.3 14 348-361 207-220 (308)
403 PF04420 CHD5: CHD5-like prote 28.7 1.3E+02 0.0028 28.5 5.7 9 252-260 46-54 (161)
404 KOG4603 TBP-1 interacting prot 28.4 5.9E+02 0.013 25.2 13.0 39 252-290 99-139 (201)
405 PRK11020 hypothetical protein; 28.2 4.4E+02 0.0095 24.3 8.5 21 271-291 35-55 (118)
406 PF05791 Bacillus_HBL: Bacillu 28.1 2.3E+02 0.0049 27.5 7.3 30 279-308 147-176 (184)
407 smart00503 SynN Syntaxin N-ter 28.0 3.9E+02 0.0083 22.9 12.7 21 297-317 91-111 (117)
408 PF08946 Osmo_CC: Osmosensory 27.8 1.4E+02 0.003 23.2 4.4 26 89-114 15-40 (46)
409 KOG2150 CCR4-NOT transcription 27.7 1E+03 0.022 27.6 13.5 18 202-219 46-63 (575)
410 PF04859 DUF641: Plant protein 27.6 2.1E+02 0.0046 26.7 6.6 50 243-292 77-126 (131)
411 cd07651 F-BAR_PombeCdc15_like 27.3 6.2E+02 0.013 25.1 21.0 31 336-366 186-216 (236)
412 KOG4643 Uncharacterized coiled 27.3 1.3E+03 0.028 28.8 31.4 23 200-222 438-460 (1195)
413 PRK02195 V-type ATP synthase s 27.2 4.1E+02 0.0088 26.2 9.0 38 276-313 26-63 (201)
414 PF01093 Clusterin: Clusterin; 27.0 9.2E+02 0.02 26.9 13.0 74 263-373 26-99 (436)
415 COG5420 Uncharacterized conser 26.9 3.5E+02 0.0075 22.5 6.9 60 248-307 8-67 (71)
416 PHA03011 hypothetical protein; 26.8 4.8E+02 0.01 23.6 8.6 32 235-266 60-91 (120)
417 PF12729 4HB_MCP_1: Four helix 26.7 4.4E+02 0.0096 23.2 15.2 67 276-342 77-149 (181)
418 PRK11020 hypothetical protein; 26.5 3.3E+02 0.0071 25.1 7.4 21 285-305 35-55 (118)
419 TIGR00020 prfB peptide chain r 26.4 8.6E+02 0.019 26.4 13.3 59 150-217 8-68 (364)
420 PRK06285 chorismate mutase; Pr 26.4 3.9E+02 0.0085 23.1 7.8 36 269-304 9-44 (96)
421 PRK08147 flgK flagellar hook-a 26.3 9.7E+02 0.021 27.0 13.8 75 237-314 133-212 (547)
422 PF10779 XhlA: Haemolysin XhlA 26.0 3.6E+02 0.0079 22.0 7.2 48 255-302 1-48 (71)
423 PF05010 TACC: Transforming ac 25.6 6.9E+02 0.015 25.0 21.9 29 247-275 70-98 (207)
424 PF05600 DUF773: Protein of un 25.5 8E+02 0.017 27.8 12.0 52 79-130 117-168 (507)
425 PRK14161 heat shock protein Gr 25.5 2.9E+02 0.0063 27.0 7.5 27 297-323 35-61 (178)
426 KOG4191 Histone acetyltransfer 25.4 3.2E+02 0.007 30.6 8.5 59 248-306 403-471 (516)
427 PF06008 Laminin_I: Laminin Do 25.4 7.1E+02 0.015 25.1 28.0 7 201-207 133-139 (264)
428 PF10481 CENP-F_N: Cenp-F N-te 25.3 8.3E+02 0.018 25.9 18.2 55 206-273 75-129 (307)
429 PF06657 Cep57_MT_bd: Centroso 25.3 4.2E+02 0.0091 22.4 8.9 52 85-136 9-65 (79)
430 PF07083 DUF1351: Protein of u 25.3 6.8E+02 0.015 24.9 13.5 29 337-365 149-177 (215)
431 TIGR03017 EpsF chain length de 25.2 8.7E+02 0.019 26.1 20.0 24 118-141 175-198 (444)
432 KOG3091 Nuclear pore complex, 25.2 1E+03 0.023 27.0 15.7 69 124-216 337-405 (508)
433 TIGR01554 major_cap_HK97 phage 25.1 2.8E+02 0.006 29.5 8.0 12 278-289 38-49 (378)
434 PRK05892 nucleoside diphosphat 25.1 4.2E+02 0.009 25.2 8.4 25 96-120 14-38 (158)
435 cd07666 BAR_SNX7 The Bin/Amphi 25.0 7.6E+02 0.016 25.3 20.9 27 83-109 49-77 (243)
436 PF06428 Sec2p: GDP/GTP exchan 24.9 1.6E+02 0.0034 26.2 5.1 71 90-160 12-83 (100)
437 KOG4657 Uncharacterized conser 24.8 7.8E+02 0.017 25.3 13.5 100 201-313 47-155 (246)
438 cd00890 Prefoldin Prefoldin is 24.8 2E+02 0.0043 25.3 5.9 40 248-287 89-128 (129)
439 PF05055 DUF677: Protein of un 24.7 8.9E+02 0.019 26.0 11.6 42 285-326 292-333 (336)
440 PF12761 End3: Actin cytoskele 24.7 7.1E+02 0.015 24.9 10.9 20 199-218 97-116 (195)
441 PF04065 Not3: Not1 N-terminal 24.4 7.7E+02 0.017 25.2 16.9 13 205-217 49-61 (233)
442 PF09755 DUF2046: Uncharacteri 24.4 8.9E+02 0.019 25.9 22.4 84 201-303 80-164 (310)
443 PF15254 CCDC14: Coiled-coil d 24.4 1.2E+03 0.025 28.2 13.0 27 346-372 530-557 (861)
444 PF09766 FimP: Fms-interacting 24.2 5.3E+02 0.011 27.6 9.9 69 87-159 85-153 (355)
445 PRK07857 hypothetical protein; 24.1 3.4E+02 0.0075 24.5 7.1 32 89-120 31-62 (106)
446 TIGR01807 CM_P2 chorismate mut 24.0 2E+02 0.0044 23.6 5.4 32 90-121 3-34 (76)
447 PF04912 Dynamitin: Dynamitin 23.3 9.5E+02 0.021 25.8 14.7 24 89-112 90-113 (388)
448 COG1256 FlgK Flagellar hook-as 23.2 6.5E+02 0.014 28.8 10.8 45 269-313 165-212 (552)
449 PF10046 BLOC1_2: Biogenesis o 23.2 5E+02 0.011 22.6 11.3 83 93-190 14-96 (99)
450 PF14735 HAUS4: HAUS augmin-li 23.1 8.2E+02 0.018 25.0 13.2 37 175-218 148-184 (238)
451 PF08647 BRE1: BRE1 E3 ubiquit 23.1 5E+02 0.011 22.5 10.9 35 276-310 26-60 (96)
452 COG3352 FlaC Putative archaeal 23.1 6.9E+02 0.015 24.1 9.9 56 247-302 73-129 (157)
453 COG0598 CorA Mg2+ and Co2+ tra 22.9 8.8E+02 0.019 25.3 13.8 37 175-216 155-191 (322)
454 PRK08871 flgK flagellar hook-a 22.8 7.8E+02 0.017 28.6 11.5 44 259-302 168-211 (626)
455 PF02994 Transposase_22: L1 tr 22.7 2.7E+02 0.0059 30.0 7.4 6 343-348 211-216 (370)
456 PF03194 LUC7: LUC7 N_terminus 22.6 6.4E+02 0.014 25.9 9.7 44 294-348 122-165 (254)
457 PRK12714 flgK flagellar hook-a 22.5 1.2E+03 0.027 26.9 13.5 21 327-347 270-290 (624)
458 PF06705 SF-assemblin: SF-asse 22.5 7.9E+02 0.017 24.6 24.6 25 272-296 202-226 (247)
459 PF13851 GAS: Growth-arrest sp 22.5 7.5E+02 0.016 24.4 21.2 169 181-350 27-196 (201)
460 PF05266 DUF724: Protein of un 22.5 7.5E+02 0.016 24.3 11.6 46 264-309 128-173 (190)
461 PF05384 DegS: Sensor protein 22.4 7E+02 0.015 24.0 18.0 101 100-212 6-112 (159)
462 PRK02793 phi X174 lysis protei 22.4 4.6E+02 0.0099 21.8 8.1 45 255-299 10-54 (72)
463 PRK06665 flgK flagellar hook-a 22.4 4.2E+02 0.009 30.7 9.2 22 327-348 279-300 (627)
464 TIGR01801 CM_A chorismate muta 22.3 2.2E+02 0.0047 25.2 5.5 32 89-120 7-38 (102)
465 PF10147 CR6_interact: Growth 22.2 3.2E+02 0.0069 27.7 7.2 8 37-44 64-71 (217)
466 PF14257 DUF4349: Domain of un 22.2 1.6E+02 0.0035 29.6 5.3 62 125-197 136-199 (262)
467 PRK04406 hypothetical protein; 22.2 4.8E+02 0.01 21.9 8.7 45 258-302 9-53 (75)
468 PRK02119 hypothetical protein; 22.1 4.7E+02 0.01 21.8 8.4 44 259-302 8-51 (73)
469 PRK10636 putative ABC transpor 21.8 5.6E+02 0.012 29.4 10.1 60 259-318 562-628 (638)
470 PF12795 MscS_porin: Mechanose 21.8 8E+02 0.017 24.4 20.4 24 194-217 77-101 (240)
471 PF09177 Syntaxin-6_N: Syntaxi 21.8 5.1E+02 0.011 22.2 8.9 80 77-162 2-97 (97)
472 PF10191 COG7: Golgi complex c 21.7 1.4E+03 0.03 27.2 19.3 118 247-370 109-235 (766)
473 PF01519 DUF16: Protein of unk 21.4 6.1E+02 0.013 22.9 8.2 57 237-293 42-100 (102)
474 PF10211 Ax_dynein_light: Axon 21.4 7.7E+02 0.017 24.0 13.7 101 207-307 86-189 (189)
475 cd09237 V_ScBro1_like Protein- 21.4 9.9E+02 0.021 25.3 20.7 224 79-339 110-355 (356)
476 COG1256 FlgK Flagellar hook-as 21.3 9.4E+02 0.02 27.6 11.6 49 253-301 163-214 (552)
477 TIGR02492 flgK_ends flagellar 21.3 5.8E+02 0.013 26.7 9.4 12 286-297 196-207 (322)
478 KOG0804 Cytoplasmic Zn-finger 21.2 1.2E+03 0.026 26.3 16.5 76 245-320 367-442 (493)
479 PRK14139 heat shock protein Gr 21.2 6.5E+02 0.014 24.8 9.0 19 302-320 53-71 (185)
480 PRK14158 heat shock protein Gr 21.2 7.4E+02 0.016 24.6 9.4 104 38-159 5-108 (194)
481 PF09403 FadA: Adhesion protei 21.1 6.7E+02 0.015 23.2 10.2 77 89-165 48-126 (126)
482 PF04977 DivIC: Septum formati 21.1 2.3E+02 0.005 22.7 5.1 41 248-288 19-59 (80)
483 PRK05683 flgK flagellar hook-a 20.9 9E+02 0.02 28.4 11.6 114 181-300 89-209 (676)
484 PRK15178 Vi polysaccharide exp 20.8 1.2E+03 0.026 26.0 12.9 146 180-327 229-383 (434)
485 PRK13169 DNA replication intia 20.7 4.4E+02 0.0096 23.9 7.2 70 234-303 3-81 (110)
486 TIGR01805 CM_mono_grmpos monof 20.5 2.7E+02 0.0058 23.2 5.4 34 89-122 2-35 (81)
487 KOG2391 Vacuolar sorting prote 20.4 5E+02 0.011 28.1 8.5 78 223-300 207-286 (365)
488 PF07795 DUF1635: Protein of u 20.3 3.8E+02 0.0082 27.1 7.3 45 90-134 16-60 (214)
489 PF13851 GAS: Growth-arrest sp 20.3 8.4E+02 0.018 24.0 23.9 168 93-297 27-201 (201)
490 PF10779 XhlA: Haemolysin XhlA 20.2 4.8E+02 0.011 21.3 7.9 51 248-298 1-51 (71)
491 PRK07248 hypothetical protein; 20.2 2.7E+02 0.0058 23.4 5.5 34 89-122 4-37 (87)
492 PRK14158 heat shock protein Gr 20.2 7.4E+02 0.016 24.6 9.2 57 281-348 40-96 (194)
493 PF15066 CAGE1: Cancer-associa 20.2 1.3E+03 0.028 26.2 20.8 200 153-370 314-513 (527)
494 TIGR00309 V_ATPase_subD H(+)-t 20.1 8.4E+02 0.018 24.0 9.9 61 252-312 8-69 (209)
495 PF09403 FadA: Adhesion protei 20.1 7.1E+02 0.015 23.1 9.6 84 236-320 24-107 (126)
496 PRK14148 heat shock protein Gr 20.0 3.8E+02 0.0081 26.6 7.1 50 278-327 37-86 (195)
No 1
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.61 E-value=5.4e-12 Score=128.23 Aligned_cols=220 Identities=21% Similarity=0.317 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHH-----------
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQA----------- 157 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~----------- 157 (520)
..+..++..+...+..+++.|+.++..+...++.|++++.+.+.++++-+.+++.++..++++..++..
T Consensus 9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778889999999999999999999999999999999888888877777776666666555542
Q ss_pred ---HhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010022 158 ---LGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKK 234 (520)
Q Consensus 158 ---L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~k 234 (520)
+..+++..+... +...|+..|.+.|.+|+|.++|.+||+.+|+++|+.|++|++....+.....
T Consensus 89 ~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e------------ 155 (294)
T COG1340 89 RKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALE------------ 155 (294)
T ss_pred HHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 222323222221 4568999999999999999999999999999999999999999887533222
Q ss_pred hhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010022 235 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 235 e~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~ 314 (520)
..+.++.+.+++++++++..+++.+|..+.++...+..++..+..+.+.+..+.|++...+-.++...++.+..|-+.
T Consensus 156 --~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 156 --ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 223455566778899999999999999999999999999999999999999999999988888888888888877777
Q ss_pred HHHHHHHHH
Q 010022 315 RALLNEAKA 323 (520)
Q Consensus 315 r~~~~kare 323 (520)
...++....
T Consensus 234 ~~elre~~k 242 (294)
T COG1340 234 QNELRELEK 242 (294)
T ss_pred HHHHHHHHH
Confidence 766666543
No 2
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.02 E-value=4.8e-07 Score=92.51 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS 325 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela 325 (520)
...++..+.+++..+......+..++..|..+.++++.+.-++|..++.+|++.|+++..|-+++..+....+-.
T Consensus 156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~ 230 (294)
T COG1340 156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEF 230 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445556666666777777778888888888888888888899999999999999999998888888777765533
No 3
>PRK03918 chromosome segregation protein; Provisional
Probab=98.09 E-value=0.0067 Score=70.38 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRA 118 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~ 118 (520)
.+..+|..++.++..++.....+...++.
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~ 484 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRE 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666555555544443
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.91 E-value=0.013 Score=69.24 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVR 123 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R 123 (520)
.+...|..+..++..+......+...+..+....
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~ 711 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444444444433333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.89 E-value=0.02 Score=67.79 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHH
Q 010022 92 RAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKS 142 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~ 142 (520)
...|..+..++..+......+...+.........+..++..+......+..
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 723 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK 723 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666555555444443333
No 6
>PRK11637 AmiB activator; Provisional
Probab=97.87 E-value=0.015 Score=62.68 Aligned_cols=68 Identities=9% Similarity=0.151 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ 156 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe 156 (520)
..++.+|++++.+|..+.+....+...+.....+...+..+|..+..+.......+.....+|..++.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555555555554444444444444444444444333333333333333
No 7
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.83 E-value=0.04 Score=60.73 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=43.7
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 239 eqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
.++..+...+.+++..+...+..|..+......++.++..|......+..+...+..++..|..++.+.....+.
T Consensus 330 ~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 330 DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555566666666666666666666666666666666666665554443
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.81 E-value=0.041 Score=64.89 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~L 154 (520)
..+..+++.++.++..+......+...+.........+..++..+......+...+.....++..+
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555555555555555555555444444433333333333333333
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.80 E-value=0.026 Score=70.57 Aligned_cols=246 Identities=18% Similarity=0.249 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCCCCCHHHH
Q 010022 100 REIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEEL 179 (520)
Q Consensus 100 keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~fkSveEI 179 (520)
.++..+...+..+-..+.....+...+..+++.|..+..+++..+..-.++-+.+.+.++.+.+.-.+. -.-+..+
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~----eek~~~l 1011 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAE----EEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 333333333333333333444555555555555555555555544444444444444444332111000 0012345
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHH
Q 010022 180 DDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVW 259 (520)
Q Consensus 180 D~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr 259 (520)
...+..||-.++---..|..|++...+..... |+........+..+.+.-.++..+..+++.+..+|..+..+++...
T Consensus 1012 ~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~--rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEVTLEREKRIRMELEKAK--RKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66677777777777778899999998887333 2222223333444455555666677777766666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHH
Q 010022 260 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA---------------------YFFQYRALL 318 (520)
Q Consensus 260 ~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~---------------------~f~~~r~~~ 318 (520)
.-+..+...+..+...+..|.+++.+-...|.++-..+..|..++.+++. +|+..++.+
T Consensus 1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555566666656665555555555555555444444444333332 444444444
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCCh
Q 010022 319 NEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNK 352 (520)
Q Consensus 319 ~karela~~~~v~el~~~~~~eve~fm~~wn~d~ 352 (520)
.. ..+.....+.+++..|...|...-+..-+..
T Consensus 1170 ee-e~~~~e~~~~~lr~~~~~~~~el~~qle~l~ 1202 (1930)
T KOG0161|consen 1170 EE-ETLDHEAQIEELRKKHADSLAELQEQLEQLQ 1202 (1930)
T ss_pred HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 2233345666777777777776666554433
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.77 E-value=0.046 Score=66.17 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=10.7
Q ss_pred CCCCCcceeecCCC
Q 010022 30 GPVKDESIIFGSHG 43 (520)
Q Consensus 30 ~~~~~~~i~fgs~~ 43 (520)
...|.|.|.+||.+
T Consensus 58 a~~~~DlIf~g~~~ 71 (1163)
T COG1196 58 ASKMSDLIFAGSGN 71 (1163)
T ss_pred ccCCcceeeCCCCC
Confidence 34588999999955
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=97.77 E-value=0.046 Score=63.75 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 267 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 267 ~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
..+..+..+++.+..++..+.+.++.+.+.+..||.+.+++
T Consensus 599 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 599 AAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555556666666655554
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.76 E-value=0.028 Score=67.94 Aligned_cols=102 Identities=15% Similarity=0.295 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 326 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~ 326 (520)
++......++.+...|..+..++..+..+++.+...+..+......+...+..++.++..++..+-.++.....+..-.
T Consensus 815 ~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l- 893 (1163)
T COG1196 815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL- 893 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333444444444444444444444444455555555555555555555555555555555554444444443332211
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhC
Q 010022 327 KKDVQGLKELSNSEVEKYMTLWNN 350 (520)
Q Consensus 327 ~~~v~el~~~~~~eve~fm~~wn~ 350 (520)
..+..--..|..+++++...||.
T Consensus 894 -~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 894 -RELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233455666666666653
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=97.69 E-value=0.14 Score=59.83 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=40.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV-------NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 317 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl-------~al~~krdeay~~i~~LRkerde~n~~f~~~r~~ 317 (520)
...++.+.+++..+...+..+...+..+.+++..+...+ +.+....+.+-..+..|+..+.......-.++..
T Consensus 362 ~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 441 (880)
T PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444443333 3334444555556666666666666655556666
Q ss_pred HHHHHH
Q 010022 318 LNEAKA 323 (520)
Q Consensus 318 ~~kare 323 (520)
+..++.
T Consensus 442 l~~~~~ 447 (880)
T PRK02224 442 VEEAEA 447 (880)
T ss_pred HHHHHH
Confidence 666664
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.66 E-value=0.042 Score=64.75 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010022 92 RAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSL 133 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~L 133 (520)
...+..+...+..+......+...+.........+..++..+
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 272 (1179)
T TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555444444444444444444333333333333333
No 15
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.63 E-value=0.045 Score=61.40 Aligned_cols=92 Identities=24% Similarity=0.392 Sum_probs=59.3
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 244 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 244 l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
+..+|..+.+.+..+...+......+..+.+.+..+.++++.+...+.++.+.+..||+.-.+....+-.++..+...+.
T Consensus 353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444445566677788888888888888888888888888877777777777777777666
Q ss_pred HhhccCHHHHHH
Q 010022 324 MSVKKDVQGLKE 335 (520)
Q Consensus 324 la~~~~v~el~~ 335 (520)
+..+.++.++.+
T Consensus 433 ~l~k~~lpgip~ 444 (569)
T PRK04778 433 YLEKSNLPGLPE 444 (569)
T ss_pred HHHHcCCCCCcH
Confidence 666655544433
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=97.62 E-value=0.14 Score=59.54 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=21.4
Q ss_pred CCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010022 86 YDDPKIRAKI-DLTDREIQRRNQARMQLMDELRAKRGVRG 124 (520)
Q Consensus 86 pDd~~lkakI-~~a~keI~kl~q~R~~I~a~i~~~R~~R~ 124 (520)
|=++.++..| +....+|..+......|.+.+..+..+..
T Consensus 444 ~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~ 483 (880)
T PRK03918 444 ELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483 (880)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455554 66666666666655556555555544443
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.61 E-value=0.068 Score=53.47 Aligned_cols=218 Identities=16% Similarity=0.218 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCC
Q 010022 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGI 172 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~ 172 (520)
.||..++.++.........+...+.....++...-.++.+|......+-..++..-..+......|..+.
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e---------- 70 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE---------- 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH----------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------
Confidence 3566777777777766667777777777777777777766666655544444333333333333333221
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHH
Q 010022 173 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVK 252 (520)
Q Consensus 173 fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLK 252 (520)
+..++..+....||.+..+..-.|..=-.-|+++...-..... .|....-++.-.-+..+.+.+++......|..|.
T Consensus 71 -~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~--k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 71 -KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAER--KYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp -HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 1234444444444444433221111111111111111111000 0111111111111122223333333334444555
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 253 KESQAVWAKISHLE-------GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 253 keldalr~kIkel~-------~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
.++..+.+.++.+. ...+.+...|..|...+..+-...+.+-.....|-.+.|.+...++..+.....++.
T Consensus 148 ~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 148 EELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555443 333455566777888888888888888888888888888888888877777766544
No 18
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.60 E-value=0.084 Score=58.19 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=7.1
Q ss_pred HHHHhCChHhHHHHHHH
Q 010022 345 MTLWNNNKAFRDDYEKR 361 (520)
Q Consensus 345 m~~wn~d~~FR~dY~k~ 361 (520)
+.-|-.+..||.-+++.
T Consensus 408 i~~~~~~~g~~~~i~~~ 424 (562)
T PHA02562 408 VTDLLKDSGIKASIIKK 424 (562)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 33333334555433333
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.049 Score=66.64 Aligned_cols=143 Identities=10% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCC---hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccch
Q 010022 173 CSSEEELDDLIRSLQYRIQHEIIP---LSEE-KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDL 248 (520)
Q Consensus 173 fkSveEID~rI~~LE~~IqhgSLs---L~EE-KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eI 248 (520)
..|+++|...|..++..+..-.-. +.++ .++-.+|++|+.....+ -+.+.++.+.+..+..+..+ |
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el---~~~klkl~~~l~~r~~le~~-------L 890 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL---KSEKLQIGTNLQRRQQFEEQ-------L 890 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------H
Confidence 458888999998888877654222 2222 33445666665543332 33444555545444444444 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK 328 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~ 328 (520)
+++..++..++..|+.+...+.-+..++..++.+++.+....+..+ ..++.+.+.....+.+.........++...|
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~ 967 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN---KKAQDKVNDIKEKVKNIHGYMKDIENKIQDG 967 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555555555555555555555555555555555555544444433 3334444444444444444444555555544
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.59 E-value=0.14 Score=57.30 Aligned_cols=186 Identities=20% Similarity=0.299 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccC
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSG 170 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~ 170 (520)
+..+++...++...|.+....+......++.+-..+..+|...+.+...+.............|......+..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~------- 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE------- 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 5556666666666666665555555555555555555555555555444444333333322222222222211
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhh
Q 010022 171 GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDG 250 (520)
Q Consensus 171 ~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIde 250 (520)
.-++...+|..|+..|.+=+-...|--+++..++.+...++... ...+..+.....+......+.. .
T Consensus 214 ----q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~--~eLk~rLk~~~~~~~~~~~~~~-------~ 280 (546)
T PF07888_consen 214 ----QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE--AELKQRLKETVVQLKQEETQAQ-------Q 280 (546)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhh-------h
Confidence 23455667777777666544444555555666655554444321 1112233332222221111111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN 296 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~ 296 (520)
+..+.+.++.+|..+.+.+.+.+.+..-|..++.++...||.....
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~ae 326 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAE 326 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344444444444444555555555555555555555444433
No 21
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.081 Score=61.90 Aligned_cols=244 Identities=18% Similarity=0.243 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhcccc
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARS 169 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs 169 (520)
.|.+.++.++.+|...++...++.+.++..-..|.....+...|..+....+..+......+.+....|..++
T Consensus 682 ~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~------- 754 (1200)
T KOG0964|consen 682 ELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK------- 754 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH-------
Confidence 3556666666666666666666666666665555555555555554444443333333333333333333221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC---CChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Q 010022 170 GGICSSEEELDDLIRSLQYRIQHEI---IPLSEEK---QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKL 243 (520)
Q Consensus 170 ~~~fkSveEID~rI~~LE~~IqhgS---LsL~EEK---klLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~ 243 (520)
.+...+...-..+|..+.+.- |++.|.. ++=.+|.+|......+.. +-++ +.....+
T Consensus 755 ----~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~---------er~~----~~~rk~~ 817 (1200)
T KOG0964|consen 755 ----TSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALRE---------ERID----IETRKTA 817 (1200)
T ss_pred ----HHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHH----HHHHHHH
Confidence 122333333444444444432 4444443 233455555554333221 1010 1111112
Q ss_pred hccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010022 244 MGSDL-DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 322 (520)
Q Consensus 244 l~~eI-deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kar 322 (520)
+...| .-|....+.+.+.|..+.+ .....++...+.++..+....+.+..++..|....+.+.+..-+.+..+-+++
T Consensus 818 le~~l~~kL~~r~~~l~~ei~~~~d--~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~ 895 (1200)
T KOG0964|consen 818 LEANLNTKLYKRVNELEQEIGDLND--SSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK 895 (1200)
T ss_pred HHHHHHHHHHhhhhHHHHHhhhccc--ccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2245555555555444432 13345677788888888888888888889999999999999999999999998
Q ss_pred HHhhccCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHh
Q 010022 323 AMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRL 362 (520)
Q Consensus 323 ela~~~~v~el~~~~~~eve~fm~~wn~d~~FR~dY~k~~ 362 (520)
.++...-.. .. +..++|+.|..-+.--.=|++|.++|
T Consensus 896 ~lek~~~~~--~~-~dKe~Ek~~~rk~~Ll~KreE~~ekI 932 (1200)
T KOG0964|consen 896 NLEKEKKDN--IN-FDKELEKLVRRKHMLLKKREECCEKI 932 (1200)
T ss_pred HHHHHHhhh--hh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887664333 12 22889999988888777788777763
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.16 Score=62.32 Aligned_cols=246 Identities=14% Similarity=0.150 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHH
Q 010022 111 QLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRI 190 (520)
Q Consensus 111 ~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~I 190 (520)
.....+..+.....++..++....+........+......+..++..|+.+. ......+.++.+|..++..+
T Consensus 416 e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~ 487 (1311)
T TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE--------GSSDRILELDQELRKAEREL 487 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cChHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666665555555555555555555555555554321 22447778888888888888
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHH-
Q 010022 191 QHEIIPLSEEKQILREIKQLEGTREKVMAN-------AAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKI- 262 (520)
Q Consensus 191 qhgSLsL~EEKklLkEIsqL~k~Rk~v~a~-------~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kI- 262 (520)
+..+-.. ....+-.+|..++.....+... ...-........+.+.+...+......|..+......--..+
T Consensus 488 ~~~~~~~-~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 566 (1311)
T TIGR00606 488 SKAEKNS-LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566 (1311)
T ss_pred HHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6665532 3333334444433332222111 111111111111112121222211111221111110000000
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 010022 263 ------SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKEL 336 (520)
Q Consensus 263 ------kel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~ 336 (520)
..+...+..+..++..++.+.+.+......+-..+..++.+...+....-.+...+. +...-.+..++=.-
T Consensus 567 ~~~~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~---~~~~~~~~~~~L~~ 643 (1311)
T TIGR00606 567 GYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF---DVCGSQDEESDLER 643 (1311)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCchhHHHHHHH
Confidence 122333334444444444444444444444444444444444444444444444433 11122344556667
Q ss_pred HHHHHHHHHHHHhCChHhHHHHHHHhHHHHhh
Q 010022 337 SNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDM 368 (520)
Q Consensus 337 ~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~ 368 (520)
+..+.+..+.-.+.-..-+..|.+++...+.+
T Consensus 644 ~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~ 675 (1311)
T TIGR00606 644 LKEEIEKSSKQRAMLAGATAVYSQFITQLTDE 675 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888888888888888888999988888544
No 23
>PRK11637 AmiB activator; Provisional
Probab=97.51 E-value=0.03 Score=60.40 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~ 159 (520)
..++.+|..++.+|..++.....+...+..+..+-..+..+|..+..+.......+.....+|..++..|.
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888877777777777777766666666666666655555555555555555555554443
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.37 E-value=0.12 Score=60.20 Aligned_cols=238 Identities=18% Similarity=0.287 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh-------hhhhhhccccCCCCCCHHHHHHHH
Q 010022 111 QLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG-------KLRTTNNARSGGICSSEEELDDLI 183 (520)
Q Consensus 111 ~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~-------klre~nnArs~~~fkSveEID~rI 183 (520)
.+...+.++..+..-|.+.+.+|+.........++.+...+..++.-+. ++++...... .-+.-+..+|
T Consensus 326 ~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e----~ki~~Lq~ki 401 (775)
T PF10174_consen 326 VLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKE----RKINVLQKKI 401 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3334444455666666777777777776666666666666666655432 2322211100 0112233444
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh--------hccchhhHHHHH
Q 010022 184 RSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKL--------MGSDLDGVKKES 255 (520)
Q Consensus 184 ~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~--------l~~eIdeLKkel 255 (520)
..|+..+- ..++++-.+-..|.. -.++...-.....+.+++..++-+++.+.. ...+++..++++
T Consensus 402 e~Lee~l~------ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~ 474 (775)
T PF10174_consen 402 ENLEEQLR------EKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKEL 474 (775)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544432 233334444444442 111111122234444445455444444332 245666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc-C-----
Q 010022 256 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK-D----- 329 (520)
Q Consensus 256 dalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~-~----- 329 (520)
..++..+..+...+....-.+..++++...+..-....+..|..|.-.....+..+-..-..+.+++..+... .
T Consensus 475 ~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le 554 (775)
T PF10174_consen 475 KELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLE 554 (775)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHH
Confidence 7777777777777776666777778888888888888888888888888888887777777776643322221 1
Q ss_pred --HHH---HHHHHHHHHHHHHHHHhCChHhHHHHH
Q 010022 330 --VQG---LKELSNSEVEKYMTLWNNNKAFRDDYE 359 (520)
Q Consensus 330 --v~e---l~~~~~~eve~fm~~wn~d~~FR~dY~ 359 (520)
|.. --.-|.+|||+.|...-+-..=+.+-.
T Consensus 555 ~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke 589 (775)
T PF10174_consen 555 QEVTRYREESEKAQAEVERLLDILREAENEKNDKE 589 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 222 234578999999987755444444443
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.31 E-value=0.064 Score=54.24 Aligned_cols=164 Identities=16% Similarity=0.223 Sum_probs=90.6
Q ss_pred HHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCChH
Q 010022 119 KRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLS 198 (520)
Q Consensus 119 ~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL~ 198 (520)
+.-++..+...|+.++++...++..+.....++..|...+..+. ....++..+|..++..+ .+.-+..
T Consensus 22 l~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e-----------~ei~~~r~r~~~~e~kl-~~v~~~~ 89 (239)
T COG1579 22 LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE-----------SEIQEIRERIKRAEEKL-SAVKDER 89 (239)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-hccccHH
Confidence 33344455555555555555555555555555555555544331 23556777888888888 4444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 199 EEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEA 278 (520)
Q Consensus 199 EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~ 278 (520)
+=..+-.||..++.....+.. ++.+.++ ++..+.+++..++..+..++..+.++ ...
T Consensus 90 e~~aL~~E~~~ak~r~~~le~------el~~l~~--------------~~~~l~~~i~~l~~~~~~~e~~~~e~---~~~ 146 (239)
T COG1579 90 ELRALNIEIQIAKERINSLED------ELAELME--------------EIEKLEKEIEDLKERLERLEKNLAEA---EAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 555666677777666554321 1122221 22233444444444333333333222 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010022 279 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 317 (520)
Q Consensus 279 LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~ 317 (520)
+..++..+..++...+..+..|....+..--.||+..+.
T Consensus 147 ~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~ 185 (239)
T COG1579 147 LEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRK 185 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 556677777778888888888888888777777765544
No 26
>PRK01156 chromosome segregation protein; Provisional
Probab=97.30 E-value=0.6 Score=54.87 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~ 117 (520)
.+..+|..+..+|..++.....|...+.
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444444443
No 27
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.27 E-value=0.47 Score=54.05 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKT 135 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~ 135 (520)
+..+++.++.++..+......+...+.....+...+..++..++.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555554444
No 28
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.096 Score=61.31 Aligned_cols=145 Identities=17% Similarity=0.264 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 200 EKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 279 (520)
Q Consensus 200 EKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~L 279 (520)
++|+=.||.+|...-.. ..++.+.++..+..+..++...-.++.++...|.+....++.+..++..+
T Consensus 392 Dkwir~ei~~l~~~i~~-------------~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~ 458 (1200)
T KOG0964|consen 392 DKWIRSEIEKLKRGIND-------------TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTEL 458 (1200)
T ss_pred HHHHHHHHHHHHHHHhh-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHH
Confidence 36777777777766332 22233333333333333344444444445555555555666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH-----HHHHHHHhCChHh
Q 010022 280 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEV-----EKYMTLWNNNKAF 354 (520)
Q Consensus 280 qeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~ev-----e~fm~~wn~d~~F 354 (520)
..+++++...|..++-+=+.|+.....+....-.....++.+-.-.-..-+..+...|...- =-.|++.-.+..|
T Consensus 459 k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f 538 (1200)
T KOG0964|consen 459 KRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKF 538 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHH
Confidence 77777777777777777777777777666666665555555422111112222333322111 1246666677777
Q ss_pred HHH
Q 010022 355 RDD 357 (520)
Q Consensus 355 R~d 357 (520)
+--
T Consensus 539 ~ta 541 (1200)
T KOG0964|consen 539 KTA 541 (1200)
T ss_pred HhH
Confidence 643
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.2 Score=59.69 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
....++..|...+..+..-+..++.+..++...+.++.++.+.+..|+++...++...+..|..+..++.
T Consensus 522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444455666666777777777777777777777777777777777776666665
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.21 E-value=0.55 Score=52.80 Aligned_cols=101 Identities=14% Similarity=0.297 Sum_probs=68.8
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------
Q 010022 237 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN-------- 308 (520)
Q Consensus 237 iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n-------- 308 (520)
+.+.+.........++.+++.+..+++.+......+.+.+..|...-..+....+..-..+..++......|
T Consensus 367 ~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y 446 (569)
T PRK04778 367 ITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDY 446 (569)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 444455555667778888888888888888888888888888887777777777777777777776554443
Q ss_pred -HHHHHHHHHHHHHHHHhhcc--CHHHHHHHH
Q 010022 309 -AYFFQYRALLNEAKAMSVKK--DVQGLKELS 337 (520)
Q Consensus 309 -~~f~~~r~~~~karela~~~--~v~el~~~~ 337 (520)
..|+.....+.....-...| |+.++...+
T Consensus 447 ~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~ 478 (569)
T PRK04778 447 LEMFFEVSDEIEALAEELEEKPINMEAVNRLL 478 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 35555555556655544445 777777333
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.19 E-value=0.35 Score=49.60 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRS 132 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~ 132 (520)
..+...|..++..|..+...+..+.-.++.++.....+..++..
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 55777777777777777777766666666555444444444433
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=97.15 E-value=0.64 Score=54.64 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010022 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAA 128 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~ 128 (520)
|.....+|..+......|...+..+......+..
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~ 504 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKK 504 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555444444443333
No 33
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.13 E-value=0.38 Score=60.74 Aligned_cols=257 Identities=19% Similarity=0.223 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccC
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSG 170 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~ 170 (520)
+...|..++-.++..+.....+...++........|+.++...+.....+++.+..--..+..|++.+-.++....+-..
T Consensus 1609 le~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~R 1688 (1930)
T KOG0161|consen 1609 LEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALER 1688 (1930)
T ss_pred hhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443333333333333333333333333333222221111001
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH
Q 010022 171 GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANA----------------------AMRAKIQ 228 (520)
Q Consensus 171 ~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~----------------------~~~aki~ 228 (520)
..-..+-+++....++.....++|..+.+-+++=.+|..|+.....+.... .-+...+
T Consensus 1689 arr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~ 1768 (1930)
T KOG0161|consen 1689 ARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQ 1768 (1930)
T ss_pred HHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 112244555555566666666666677777777777777766655532211 1112222
Q ss_pred hhhhhhhhHHHHHHhhccchhhH--------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 010022 229 ESMGKKEDIQDQVKLMGSDLDGV--------KKESQAVWAKISHLEGKVKALDE-------EIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 229 es~~~ke~iqeqiK~l~~eIdeL--------Kkeldalr~kIkel~~k~~al~~-------ei~~LqeEl~al~~krdea 293 (520)
.+-..+..++.+++.+...|+++ ++.+..+.++|..|+..++.-.. .+......+..+.-+-++=
T Consensus 1769 ~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed 1848 (1930)
T KOG0161|consen 1769 KLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEED 1848 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 22223444555556555555554 66777777777777777663322 2334444555555555666
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHH
Q 010022 294 FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQGLKELSNSEVEKYMTL 347 (520)
Q Consensus 294 y~~i~~LRkerde~n~~f~~~r~~~~karela~~--~~v~el~~~~~~eve~fm~~ 347 (520)
-.++.-++...|.++.....|++-+-.+.+.+.+ ..++-+|.-+..--|++=++
T Consensus 1849 ~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~ 1904 (1930)
T KOG0161|consen 1849 KKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTA 1904 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888888888888888777766 45666666666555555443
No 34
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.92 E-value=0.87 Score=49.57 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=45.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhh
Q 010022 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 85 ~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~kl 161 (520)
.|++-+....+++.+.+|..++.....+......+......+-.++..+..+....-..+....+.|..+...|..+
T Consensus 30 s~s~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 30 AFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 34444444667777777777776666666555556666666666666666665555555555555555555544443
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.87 E-value=0.2 Score=59.49 Aligned_cols=83 Identities=16% Similarity=0.297 Sum_probs=51.1
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010022 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 239 eqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~ 318 (520)
+.++.+..++..+...+..|+.++..+...+.....+...+..+...+...+.-...+|+.|++-.+-..+.|-.+...+
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~l 480 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQL 480 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 33444444444445555555555555555555555666666666667777777777778888887777777777665555
Q ss_pred HHH
Q 010022 319 NEA 321 (520)
Q Consensus 319 ~ka 321 (520)
-.+
T Consensus 481 L~~ 483 (1074)
T KOG0250|consen 481 LRA 483 (1074)
T ss_pred HHH
Confidence 444
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=1 Score=54.08 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=10.4
Q ss_pred hhHhHhhHHHHHHH
Q 010022 498 KEIIYGTYFFTITV 511 (520)
Q Consensus 498 ~~~~~~~~~~~~~~ 511 (520)
.|..+|++|.+.++
T Consensus 1138 dEFm~gf~~Is~kL 1151 (1293)
T KOG0996|consen 1138 DEFMAGFNIISMKL 1151 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888877553
No 37
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=1 Score=53.38 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHH
Q 010022 102 IQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKS 142 (520)
Q Consensus 102 I~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~ 142 (520)
|..+++.. .+++..+.+-..+-.+|+.|..+...|+.
T Consensus 676 l~~l~~~~----~~~~~~q~el~~le~eL~~le~~~~kf~~ 712 (1174)
T KOG0933|consen 676 LQKLKQAQ----KELRAIQKELEALERELKSLEAQSQKFRD 712 (1174)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555333 34455566666777777777776655543
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.65 E-value=1.4 Score=49.19 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDEL 116 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i 116 (520)
...+.+|..++.++..+...++......
T Consensus 133 ~~~k~EL~~lr~e~~~~~~~k~~A~~~a 160 (522)
T PF05701_consen 133 DSVKQELEKLRQELASALDAKNAALKQA 160 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888887777776666444333
No 39
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.56 E-value=1.9 Score=48.56 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=71.6
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010022 242 KLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 242 K~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~ka 321 (520)
+.+...|..+.+..+.+...+..-..-+..+...+..+.+.+..+........+.+..||+.-.........++..+...
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444455777788888889999999999999999999998888888888888888888
Q ss_pred HHHhhccCHHHH-------HHHHHHHHHHHHHHHh
Q 010022 322 KAMSVKKDVQGL-------KELSNSEVEKYMTLWN 349 (520)
Q Consensus 322 rela~~~~v~el-------~~~~~~eve~fm~~wn 349 (520)
+....+-|.-.| =..+.+++++.+...|
T Consensus 427 kR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 427 KRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777555333 2233445555555444
No 40
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.35 Score=55.71 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE-KRDK 292 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~-krde 292 (520)
+++|.++...--+.|+....+++.++..+++++-....++. +|+.
T Consensus 551 ldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~ 596 (1118)
T KOG1029|consen 551 LDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDK 596 (1118)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444445555555555555555544444444 4443
No 41
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.48 E-value=2.3 Score=48.54 Aligned_cols=41 Identities=10% Similarity=0.003 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhH
Q 010022 98 TDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGR 138 (520)
Q Consensus 98 a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k 138 (520)
+..++..+......+...+..+..+...+..++..+..+..
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333
No 42
>PRK09039 hypothetical protein; Validated
Probab=96.38 E-value=0.8 Score=48.58 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=36.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
.+|+..+....+.+..+.-|+.++.+++..+..|+..++++.....++...|..|....+..
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555556666666666666666666666666666666665544443
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.34 E-value=3.6 Score=49.30 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCCCCCC
Q 010022 331 QGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 383 (520)
Q Consensus 331 ~el~~~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~ 383 (520)
..|+.+..++-++.+ .|= .|+-.+|.-..+|-...-+-..||=.+
T Consensus 457 ~~l~~lk~~k~dkvs-------~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~ 501 (1074)
T KOG0250|consen 457 EELKDLKKTKTDKVS-------AFG-PNMPQLLRAIERRKRRFQTPPKGPLGK 501 (1074)
T ss_pred HHHHHHHhcccchhh-------hcc-hhhHHHHHHHHHHHhcCCCCCCCCccc
Confidence 344444444444333 344 778888888777766555555555444
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.34 E-value=2.5 Score=51.75 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=47.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHH
Q 010022 86 YDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQA 157 (520)
Q Consensus 86 pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~ 157 (520)
.+++.++++++.+...|..+.....++-..+.........+...+..+..+..+.+..+..-..+...++..
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 671 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQE 671 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 366799999999999999888877777777766666666666666555555554444444444444444433
No 45
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.33 E-value=3.4 Score=48.77 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHH----------------HHHHHHHHH
Q 010022 284 NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSN----------------SEVEKYMTL 347 (520)
Q Consensus 284 ~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~----------------~eve~fm~~ 347 (520)
..+.+++|.+.-++.+|..+++......|.+-..+.|.|++.++-+ ..|+++.+ .+.=-|--+
T Consensus 493 ~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq-dqlqe~~dq~~Sseees~q~~s~~~et~dyk~~ 571 (1243)
T KOG0971|consen 493 LDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ-DQLQELTDQQESSEEESQQPPSVDPETFDYKIK 571 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHH
Confidence 4567788888888899999999999999999999999999988743 12222222 112234556
Q ss_pred HhCChHhHHHHH---HHhHHHHhhhhhc
Q 010022 348 WNNNKAFRDDYE---KRLLQSLDMRQLS 372 (520)
Q Consensus 348 wn~d~~FR~dY~---k~~~~s~~~R~~~ 372 (520)
+.-+++|=++-+ +-|-.+.-+|...
T Consensus 572 fa~skayaraie~QlrqiEv~~a~rh~~ 599 (1243)
T KOG0971|consen 572 FAESKAYARAIEMQLRQIEVAQANRHMS 599 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766543 4455566666543
No 46
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.27 E-value=2.3 Score=47.85 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 010022 98 TDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG 137 (520)
Q Consensus 98 a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~ 137 (520)
=.++|..||.+..-.+++++-+-++-..|.-.|..|+.-.
T Consensus 40 EK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 40 EKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456778888777888888888888888888888877654
No 47
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.17 E-value=3 Score=48.95 Aligned_cols=78 Identities=26% Similarity=0.250 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh-ccCHH----HHH--HHHHHHHHH
Q 010022 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV-KKDVQ----GLK--ELSNSEVEK 343 (520)
Q Consensus 271 al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~-~~~v~----el~--~~~~~eve~ 343 (520)
.++.+...++.++..+++.-+..-.+++.|.+.++.+...|...-+.+...++-.. +.++. .+. +.|..+-++
T Consensus 368 ~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker 447 (775)
T PF10174_consen 368 KLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKER 447 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555556677777777777666555555555544333 33222 222 246777778
Q ss_pred HHHHH
Q 010022 344 YMTLW 348 (520)
Q Consensus 344 fm~~w 348 (520)
+++..
T Consensus 448 ~~e~l 452 (775)
T PF10174_consen 448 LQERL 452 (775)
T ss_pred HHHHH
Confidence 87774
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.16 E-value=2 Score=52.60 Aligned_cols=245 Identities=17% Similarity=0.266 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHH--------------
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ-------------- 156 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe-------------- 156 (520)
....++.++.......+....+......++..|.....+|..++.+...++..+......+.+-..
T Consensus 474 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We 553 (1201)
T PF12128_consen 474 ADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWE 553 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHH
Confidence 455555556656656666666666666666666666666666666655555555444444432211
Q ss_pred -HHhhhhhhhc-cccCCCCCCHHHH-HHHHHHHHHHHhcCC--CC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 157 -ALGKLRTTNN-ARSGGICSSEEEL-DDLIRSLQYRIQHEI--IP--LSEEKQILREIKQLEGTREKVMANAAMRAKIQE 229 (520)
Q Consensus 157 -~L~klre~nn-Ars~~~fkSveEI-D~rI~~LE~~IqhgS--Ls--L~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~e 229 (520)
.||++-+.-= .+....+.-++.- ..-+..| .|..+. .| ..+|..+-.++.+++.......
T Consensus 554 ~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl--~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~----------- 620 (1201)
T PF12128_consen 554 QTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGL--SLDLSAIDVPDYAASEEELRERLEQAEDQLQSAE----------- 620 (1201)
T ss_pred HHhHhhCCHHHhcCCCCCCeecCCCccccccee--EeehhhcCCchhhcChHHHHHHHHHHHHHHHHHH-----------
Confidence 2332210000 0000001000000 0000000 011111 22 2345555566666666544321
Q ss_pred hhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 010022 230 SMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR-DKAFANIKELRKQRDEGN 308 (520)
Q Consensus 230 s~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~kr-deay~~i~~LRkerde~n 308 (520)
...+.+..+++.....|+.++.++...+..++.....+..++.+...+..+.......+ ..+-..+..|..+....+
T Consensus 621 --~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 621 --ERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233444555556667777777777777777777777777777777666666555544 344445555555555555
Q ss_pred HHHHHHHHHHHH---HHHHhhccCHHHHHHHHHHHHHHHHHHHhC
Q 010022 309 AYFFQYRALLNE---AKAMSVKKDVQGLKELSNSEVEKYMTLWNN 350 (520)
Q Consensus 309 ~~f~~~r~~~~k---arela~~~~v~el~~~~~~eve~fm~~wn~ 350 (520)
...-.....+.. ...+..+....++..-+..+++.+....+.
T Consensus 699 ~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~ 743 (1201)
T PF12128_consen 699 QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAA 743 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333322 233344567777788888888887777754
No 49
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.08 E-value=2.6 Score=50.10 Aligned_cols=226 Identities=13% Similarity=0.214 Sum_probs=111.9
Q ss_pred ceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHh-hHHHHHHHHHHHHHHhHHhH
Q 010022 77 NFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARM----Q----------LMDELRAKRG-VRGDLAAQLRSLKTEGRQYK 141 (520)
Q Consensus 77 ~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~----~----------I~a~i~~~R~-~R~eL~~qLk~Lr~q~k~~r 141 (520)
|+|||-=-.+....+...+++++.+|+-|-|=.- . +.+..++.-. +--.++..|..|+...+++-
T Consensus 115 S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le 194 (1072)
T KOG0979|consen 115 SKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLE 194 (1072)
T ss_pred cceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Confidence 8999975677778888888888888876654221 1 1122222222 24455566666666666666
Q ss_pred HHHHHHHHhhHHHHHHHhhhh-hhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 142 SVMDDKRKEMEPLHQALGKLR-TTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMAN 220 (520)
Q Consensus 142 ~~~~~K~kEi~~Lqe~L~klr-e~nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~ 220 (520)
.....+..-++.|.+.++++. +..+ |.--+-+..+|..|+.. +++++=+..=.+-..++..++.+..
T Consensus 195 ~~~~~~~~~l~~L~~~~~~l~kdVE~------~rer~~~~~~Ie~l~~k-----~~~v~y~~~~~ey~~~k~~~~r~k~- 262 (1072)
T KOG0979|consen 195 DKLTTKTEKLNRLEDEIDKLEKDVER------VRERERKKSKIELLEKK-----KKWVEYKKHDREYNAYKQAKDRAKK- 262 (1072)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHh-----ccccchHhhhHHHHHHHHHHHHHHH-
Confidence 666666565666555555432 1111 11111222233333221 1111111111111111111111100
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 221 AAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 221 ~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~L 300 (520)
+...+-+.++.+.-.+.+|..+.....++++.+...+.+....+..+.+.++.+.+...++++.+..|
T Consensus 263 ------------~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~l 330 (1072)
T KOG0979|consen 263 ------------ELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESL 330 (1072)
T ss_pred ------------HHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111112222233445555556666666666666666666667777777777777777777777
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010022 301 RKQRDEGNAYFFQYRALLNEAKAMSV 326 (520)
Q Consensus 301 Rkerde~n~~f~~~r~~~~karela~ 326 (520)
+++.+......-+.+..+..++.-..
T Consensus 331 k~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 331 KKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77666666666666666655544433
No 50
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.03 E-value=4 Score=46.90 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=19.9
Q ss_pred ChHhHHHHHHHhHHHHhhhhhccCCC
Q 010022 351 NKAFRDDYEKRLLQSLDMRQLSRDGR 376 (520)
Q Consensus 351 d~~FR~dY~k~~~~s~~~R~~~~DGR 376 (520)
.-+.|+||.+.-..-|.||+.--.-|
T Consensus 602 ~aarrEd~~R~Ei~~LqrRlqaaE~R 627 (961)
T KOG4673|consen 602 QAARREDMFRGEIEDLQRRLQAAERR 627 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899988888888888755444
No 51
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.82 E-value=4.4 Score=45.70 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhh
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~kl 161 (520)
.+...|..++..+..+......+ .++.....-..+..+|..|-.....--.++....+.+..+...|..+
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~ 318 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHA 318 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555444333222221 33344444455555555544433322222333333333344444443
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.77 E-value=4.6 Score=45.51 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010022 274 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 308 (520)
Q Consensus 274 ~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n 308 (520)
.++..|+.++..+..--++-+.....|..+....+
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~ 405 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK 405 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666677776666666666777777777665444
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.69 E-value=1.4 Score=44.08 Aligned_cols=62 Identities=13% Similarity=0.272 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY 310 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~ 310 (520)
+.+..++..|..+++++....+.....+..|..+++.+.......-.....+..+.|...++
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666655544
No 54
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.65 E-value=8.7 Score=47.87 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRS 132 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~ 132 (520)
-...|++++.+|..+......+.+.+..+..++..|..+..+
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~ 781 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELAG 781 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777666666666666666666666665533
No 55
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.55 E-value=2 Score=48.27 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
++.|..++..+-..=..+-..|..|+-+.++-...|-.
T Consensus 305 i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~ 342 (546)
T KOG0977|consen 305 ISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ 342 (546)
T ss_pred ccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh
Confidence 33333333333333333344444555555555544443
No 56
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=3.8 Score=47.68 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=9.4
Q ss_pred HhhHHHHHHHHHH
Q 010022 120 RGVRGDLAAQLRS 132 (520)
Q Consensus 120 R~~R~eL~~qLk~ 132 (520)
|++|+++..|...
T Consensus 415 rar~qem~~Qk~r 427 (1118)
T KOG1029|consen 415 RARRQEMLNQKNR 427 (1118)
T ss_pred HHHHHHHHhhhhH
Confidence 5788888777644
No 57
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.34 E-value=6.8 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHH
Q 010022 182 LIRSLQYRIQHEIIPLSEEKQILR 205 (520)
Q Consensus 182 rI~~LE~~IqhgSLsL~EEKklLk 205 (520)
++..|..+.+.--.||.+|.+-|+
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555555555556666655555
No 58
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=5.7 Score=47.65 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=81.6
Q ss_pred hhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 234 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 234 ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
...++++++.+...+..+.+.++.+...|++++..+..+..++++|+...-.+..+-.++..++...+.+.......++.
T Consensus 404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e 483 (1141)
T KOG0018|consen 404 RAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHE 483 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 66677888888888889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 010022 314 YRALLNEAKAM 324 (520)
Q Consensus 314 ~r~~~~karel 324 (520)
..|.++...-+
T Consensus 484 ~sR~~~~~eav 494 (1141)
T KOG0018|consen 484 GSRRSRKQEAV 494 (1141)
T ss_pred cHHHHHHHHHH
Confidence 88887775443
No 59
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.10 E-value=7.3 Score=43.70 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=55.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
..+|+++...++.+-..+..-.--|..++..+..+.+.+..+..++..+.++++.||+.--+.....-.+++.+...+.
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554445556678888999999999999999999999999999655555555556655555333
No 60
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.96 E-value=15 Score=46.65 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=22.9
Q ss_pred ChHhHHHHHHHhHHHHhhhhhccCCCCCCCCCC
Q 010022 351 NKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 383 (520)
Q Consensus 351 d~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~ 383 (520)
.+.|+.+|..--.+.+..=.-..+=|+|=|++.
T Consensus 1489 k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~ee 1521 (1822)
T KOG4674|consen 1489 KKELESEKEELKQRLTELAAENLKLRSRLAKEE 1521 (1822)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 345566666655666666666778889999987
No 61
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.90 E-value=5.9 Score=41.58 Aligned_cols=60 Identities=12% Similarity=0.268 Sum_probs=28.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
.+..+...-..++.+|+.-.++|+.+++-++.-++=+...+.+.+.....+..|-++-..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~ 262 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQT 262 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555544445555555444444444444444444444444444444333
No 62
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.88 E-value=5.3 Score=40.96 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKR-------GVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R-------~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~ 159 (520)
..++..|+.+..+...+...+..+...++..+ ..|..+..++..++.........+..-..++..|++.|.
T Consensus 57 ~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 57 RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 35667777766666666666666655555544 455555555555554444433333334445555555443
No 63
>PRK09039 hypothetical protein; Validated
Probab=94.86 E-value=4.9 Score=42.71 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKS 142 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~ 142 (520)
|..+|...+.++..++.....+-..+.--+.+...+...|..++.+....+.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666667677777778888888888888777654433
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.68 E-value=17 Score=45.82 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=57.3
Q ss_pred ccccCCCCccccceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH------------------------------H
Q 010022 65 VGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLM------------------------------D 114 (520)
Q Consensus 65 a~~~~~~~~~~~~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~------------------------------a 114 (520)
++-+-....+.+-..|..+|.+-+.+-...|..|+.+++.+-..-.... .
T Consensus 758 ~v~~~~~~~~~r~s~~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~ 837 (1486)
T PRK04863 758 AVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEA 837 (1486)
T ss_pred CeeeeecchhhhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHH
Confidence 3333344445566778888999999988888888887766654222111 2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHH
Q 010022 115 ELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (520)
Q Consensus 115 ~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lq 155 (520)
.|..++.+|.++..+|..+.++..+.+..+..-...+..|+
T Consensus 838 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 878 (1486)
T PRK04863 838 ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALN 878 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888887777776666665544444444443
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.49 E-value=12 Score=43.10 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 010022 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 316 (520)
Q Consensus 271 al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~ 316 (520)
.+...+..|+.++..+.......-..+..|..++|.....+-+|..
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a 244 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVA 244 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666666666666666543
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.46 E-value=13 Score=43.40 Aligned_cols=60 Identities=30% Similarity=0.448 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhh
Q 010022 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~kl 161 (520)
+..++.+|+ .|++.|...|..=++|+.+|..|..-.+.++..+...+.+.+.|+..+..|
T Consensus 420 ~~rLE~dvk-------kLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 420 ISRLEADVK-------KLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHH-------HHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555 345677778888888999988888878888888888888888888877654
No 67
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.46 E-value=7.6 Score=47.67 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Q 010022 261 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSE 340 (520)
Q Consensus 261 kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~e 340 (520)
++...-.....+..++..|+++...+..+++++-..+.-|+...++...+|++-...-.- .++.++..+..+.+.
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine~---- 946 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDINEK---- 946 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHH----
Confidence 333334455567788999999999999999999999999999999999999988776554 455555555555444
Q ss_pred HHHHHHHHhCChHhHH----HHHHHhHHHHhhhhhccCCCCCCCCCC
Q 010022 341 VEKYMTLWNNNKAFRD----DYEKRLLQSLDMRQLSRDGRIRNPDEK 383 (520)
Q Consensus 341 ve~fm~~wn~d~~FR~----dY~k~~~~s~~~R~~~~DGR~~~pde~ 383 (520)
+..|......+..|+. +|-..+++.+..|+..+|+|+++--..
T Consensus 947 ~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~ 993 (1294)
T KOG0962|consen 947 VSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQK 993 (1294)
T ss_pred HHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888875 344567889999999999998765433
No 68
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.35 E-value=0.97 Score=41.28 Aligned_cols=88 Identities=24% Similarity=0.342 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc--cCHH
Q 010022 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQ 331 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~--~~v~ 331 (520)
++..++..+..+...-+.+..+|-.|..+.+.+ ......+..|+.+..+++..|-.....+.+..+.+.. .|+.
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 333333444444444455555555555555444 2333445566666666666666666666665554443 6999
Q ss_pred HHHHHHHHHHHHHH
Q 010022 332 GLKELSNSEVEKYM 345 (520)
Q Consensus 332 el~~~~~~eve~fm 345 (520)
+|..+|..||+..|
T Consensus 107 DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 107 DLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
No 69
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.30 E-value=13 Score=42.95 Aligned_cols=108 Identities=24% Similarity=0.276 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHH
Q 010022 174 SSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKK 253 (520)
Q Consensus 174 kSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKk 253 (520)
.-.+|...||+.||..++.. ..|-.-+=+||++|++......- .+.+.+++.++.++-.-+.+ |.|
T Consensus 402 sl~~e~~QRva~lEkKvqa~---~kERDalr~e~kslk~ela~~l~--------~DeLaEkdE~I~~lm~EGEk---LSK 467 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQAL---TKERDALRREQKSLKKELAAALL--------KDELAEKDEIINQLMAEGEK---LSK 467 (961)
T ss_pred chHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHH---hHH
Confidence 45688999999999999864 34444455688888776553211 23445566666666554444 334
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 254 ESQA-------VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA 295 (520)
Q Consensus 254 elda-------lr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~ 295 (520)
++-. ||+++++...-..+..+.|..|+.+.+.++...+..-+
T Consensus 468 ~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee 516 (961)
T KOG4673|consen 468 KQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEE 516 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHH
Confidence 4333 34444443333445555777888888877766554433
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.24 E-value=7.2 Score=39.70 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 010022 177 EELDDLIRSLQY 188 (520)
Q Consensus 177 eEID~rI~~LE~ 188 (520)
++|+..+.+++-
T Consensus 55 e~le~qv~~~e~ 66 (239)
T COG1579 55 EDLENQVSQLES 66 (239)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.89 E-value=13 Score=41.56 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHHhcC
Q 010022 175 SEEELDDLIRSLQYRIQHE 193 (520)
Q Consensus 175 SveEID~rI~~LE~~Iqhg 193 (520)
-+++|-.+|..|-..+.+.
T Consensus 173 kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 173 KVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555543
No 72
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.84 E-value=26 Score=44.71 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lq 155 (520)
+......+.+.|..+.+.-..+..+-+..+.+...+..+|..+..+...+.-.+......+.+|.
T Consensus 50 ~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~ 114 (1822)
T KOG4674|consen 50 HEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLR 114 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHH
Confidence 33344555556666665555555555566666666666666665555555444444444333333
No 73
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.59 E-value=11 Score=39.58 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHH-HHHHHhhh
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEP-LHQALGKL 161 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~-Lqe~L~kl 161 (520)
+..+.+.+.++...+...++..+.....+-.=|++|..+-+.+..+.......-..++.++.. ++..|..|
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dI 119 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDI 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455666777777777776665444444444444443 44444433
No 74
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.56 E-value=26 Score=43.87 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGV 122 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~ 122 (520)
.+|...|+.+..+|..+...+..+.+.+..+..+
T Consensus 745 ~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 745 AELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554444433
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.54 E-value=6.5 Score=36.78 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHHHH
Q 010022 175 SEEELDDLIRSLQYRI 190 (520)
Q Consensus 175 SveEID~rI~~LE~~I 190 (520)
..+-+.++|..||..+
T Consensus 74 ~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 74 NAEQLNRRIQLLEEEL 89 (143)
T ss_pred hHHHHHhhHHHHHHHH
Confidence 3445666666666533
No 76
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=93.47 E-value=19 Score=43.47 Aligned_cols=192 Identities=16% Similarity=0.255 Sum_probs=95.8
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhcc----ccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH-
Q 010022 142 SVMDDKRKEMEPLHQALGKLRTTNNA----RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK- 216 (520)
Q Consensus 142 ~~~~~K~kEi~~Lqe~L~klre~nnA----rs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~- 216 (520)
+.++..+--++.||+.|.=||..+.- ..+.-|+.++.|+.+|..|+-.+-.-.+. .+-++|+.|...+.+
T Consensus 1124 ~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~-----eitKqIsaLe~e~PKn 1198 (1439)
T PF12252_consen 1124 DSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLV-----EITKQISALEKEKPKN 1198 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHhhCCCc
Confidence 34455555666777766544432221 22345777777777777776655443332 356789999874433
Q ss_pred HHHHHHHHHHHHhhhhhhhh-HHHHHHhhc--------cchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 010022 217 VMANAAMRAKIQESMGKKED-IQDQVKLMG--------SDLDGVKKESQAVWAKI-----SHLEGKVKALDEEIEALQQE 282 (520)
Q Consensus 217 v~a~~~~~aki~es~~~ke~-iqeqiK~l~--------~eIdeLKkeldalr~kI-----kel~~k~~al~~ei~~LqeE 282 (520)
+...-.|...+.+.+...+- -+++||.-+ ..||.|+.+++.+.+.+ +.++..+..+. ......+
T Consensus 1199 ltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme--~~tf~~q 1276 (1439)
T PF12252_consen 1199 LTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQME--VKTFEEQ 1276 (1439)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhh
Confidence 22222333333344433332 234555432 45777777777665533 12222222111 1111111
Q ss_pred HHHHHH---HHHHHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHH
Q 010022 283 VNDVAE---KRDKAF------ANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQGLKELSNSE 340 (520)
Q Consensus 283 l~al~~---krdeay------~~i~~LRkerde~n~~f~~~r~~~~karela~~--~~v~el~~~~~~e 340 (520)
-.++.. -.+++- ..-..++..+-.+|..|-..+...-++-.|..+ .=+..|++||..-
T Consensus 1277 ~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~h 1345 (1439)
T PF12252_consen 1277 EKEIQQNLQLLDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEAH 1345 (1439)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHHh
Confidence 111111 111111 112345555666666666666666666666555 3478899999864
No 77
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.41 E-value=16 Score=41.04 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010022 296 NIKELRKQRDEGNAYFFQYRALLNEAKAMS 325 (520)
Q Consensus 296 ~i~~LRkerde~n~~f~~~r~~~~karela 325 (520)
.+..|..+.++....|...-..+.+.|.-+
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777777777766644
No 78
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.28 E-value=2.5 Score=42.61 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
|.+++++++.|...-....+.+..|+.+|+.|..-+..+...|+...+.+..|+.++.
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~ 91 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYK 91 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555666666666666666666666666665555555554333
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.17 E-value=31 Score=43.58 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH----HHHHHHHHHHHHHHHHH----------HHHHHhhhhhhhhH
Q 010022 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILRE----IKQLEGTREKVMANAAM----------RAKIQESMGKKEDI 237 (520)
Q Consensus 172 ~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkE----IsqL~k~Rk~v~a~~~~----------~aki~es~~~ke~i 237 (520)
+..|.+++...+...+.+++.-+-.|.+-+.-+.. ++++++....+....+. +..+.. ..+....
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~-~~~~~~~ 511 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRR-LREQRHL 511 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH-hHHHHHH
Confidence 45799999999999999888777666665544443 33444444433321111 011000 1112223
Q ss_pred HHHHHhhccchhhHHHHHHHHHH---HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 238 QDQVKLMGSDLDGVKKESQAVWA---KISHLE--------------GKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 238 qeqiK~l~~eIdeLKkeldalr~---kIkel~--------------~k~~al~~ei~~LqeEl~al~~krdeay~~i~~L 300 (520)
-+++-.++..+.+|+..+...+. -+.+.. .-.......+..|.++...+.+.|......+..|
T Consensus 512 ~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL 591 (1486)
T PRK04863 512 AEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQL 591 (1486)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555553322221 111111 1111223345666666667777777777777777
Q ss_pred HHHHHhhhH---HHHHHHHHHHHHHHHh
Q 010022 301 RKQRDEGNA---YFFQYRALLNEAKAMS 325 (520)
Q Consensus 301 Rkerde~n~---~f~~~r~~~~karela 325 (520)
..++.++.. .|.++...+.+.++..
T Consensus 592 ~~~i~~l~~~ap~W~~a~~al~~L~eq~ 619 (1486)
T PRK04863 592 QARIQRLAARAPAWLAAQDALARLREQS 619 (1486)
T ss_pred HHHHHHHHHhChHHHhhHHHHHHHHHhc
Confidence 776665554 7777777777777643
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.13 E-value=20 Score=41.23 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDV 330 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v 330 (520)
|.+++..+..++..++..+..-..++..|+.+.+.+...-+.....-..|-.+...++..|..--..+...+....+|.+
T Consensus 200 L~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~ 279 (617)
T PF15070_consen 200 LQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKV 279 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444444444444444444444455555555555555444444444566677778888777666666666655555543
No 81
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.92 E-value=1.4 Score=41.75 Aligned_cols=62 Identities=18% Similarity=0.394 Sum_probs=31.6
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEE--IEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~kIkel~~k~~al~~e--i~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
+..++.+|..|+.++..++..++.+...+..+... ...|...+..+..+...+-.++..|+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555555554443 234455555555555555555555553
No 82
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.88 E-value=21 Score=40.84 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQ 139 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~ 139 (520)
............++..+....+.|...+.........+...++.+..+...
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555554444333
No 83
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.75 E-value=14 Score=38.29 Aligned_cols=46 Identities=9% Similarity=0.206 Sum_probs=18.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh
Q 010022 114 DELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 114 a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~ 159 (520)
+++.....+++++..++..+.++.+.+...|..-.+.|...++.|+
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444333333344334333344444444443
No 84
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.61 E-value=32 Score=42.23 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHHH
Q 010022 175 SEEELDDLIRSLQY 188 (520)
Q Consensus 175 SveEID~rI~~LE~ 188 (520)
+.+.+...-+.|+-
T Consensus 537 ~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 537 SLEKVNSLRKQLEE 550 (1317)
T ss_pred HHhhHHHHHHHHHH
Confidence 34444444444443
No 85
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.45 E-value=31 Score=41.65 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=13.3
Q ss_pred chhhhHHHHHHhhhHHHHHHHH
Q 010022 451 EKKVDEAKLREMKKEEDRAKAR 472 (520)
Q Consensus 451 ~~e~~~a~lKe~~r~ee~~Kak 472 (520)
+.|...+.|+.|++--+.-|.|
T Consensus 991 ~~E~~~~~lk~k~~~Ie~Dk~k 1012 (1174)
T KOG0933|consen 991 RAEEKEAALKTKKEIIEKDKSK 1012 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 4555667777776655544444
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.28 E-value=4.1 Score=42.75 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 308 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n 308 (520)
+.++..++..|..+...+.+.+.++..++.++..+...+.++.+.+.+|..+..+..
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666666666666666666666665555443
No 87
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=22 Score=41.95 Aligned_cols=93 Identities=13% Similarity=0.209 Sum_probs=50.1
Q ss_pred CCccccceeeecc-------------CCCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010022 71 EPRVIHNFYFIRH-------------RQYDDPK----IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSL 133 (520)
Q Consensus 71 ~~~~~~~~yfvKv-------------p~pDd~~----lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~L 133 (520)
.++-...|||++. +.|+.+. .++...+++..+.+++..+..+-..+...+..-.++.-+...|
T Consensus 611 ~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL 690 (970)
T KOG0946|consen 611 NTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEEL 690 (970)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444567888875 3344322 3344455555555555555555555555555445555555555
Q ss_pred HHHhHHhHHHHHHHHHhhHHHHHHHhhhhh
Q 010022 134 KTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 134 r~q~k~~r~~~~~K~kEi~~Lqe~L~klre 163 (520)
.++...+.+......++.+-|+-.|+.++.
T Consensus 691 ~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~ 720 (970)
T KOG0946|consen 691 EEEVQDFISEHSQLKDQLDLLKNQLGIISS 720 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 555555555555555566666666665443
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.53 E-value=9.5 Score=40.17 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
+++.++.+|..+...+...+.++..++.++..+...+....+.+.+++.+..+...
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555556666666666666666655555555555555444
No 89
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.52 E-value=26 Score=40.97 Aligned_cols=103 Identities=12% Similarity=0.293 Sum_probs=53.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHH---HHHHHHhhHHHHHHHhhhhhhhc
Q 010022 91 IRAKIDLTDRE-IQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSV---MDDKRKEMEPLHQALGKLRTTNN 166 (520)
Q Consensus 91 lkakI~~a~ke-I~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~---~~~K~kEi~~Lqe~L~klre~nn 166 (520)
+-.-+..++.+ |......|.+|...++.++........+|..+.++...++.. +.++++++..-|
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Q----------- 609 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQ----------- 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 44445555555 566666677777777666666666566666655554444321 122223332222
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHH
Q 010022 167 ARSGGICSSEEELDDLIRSLQYRIQHE--IIPLSEEKQILREIKQLEGTRE 215 (520)
Q Consensus 167 Ars~~~fkSveEID~rI~~LE~~Iqhg--SLsL~EEKklLkEIsqL~k~Rk 215 (520)
+.|..|+..|=..+... .||. .|+.+.+|...++....
T Consensus 610 ----------e~L~~R~~~vl~~l~~~~P~LS~-AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 610 ----------EKLMKRVDRVLQLLNSQLPVLSE-AEREFKKELERMKDQLQ 649 (717)
T ss_pred ----------HHHHHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHHHHH
Confidence 23444444444444332 2332 35888888776666543
No 90
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.32 E-value=21 Score=37.50 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 010022 87 DDPKIRAKIDLTDREIQRRNQAR 109 (520)
Q Consensus 87 Dd~~lkakI~~a~keI~kl~q~R 109 (520)
|...+..++..++.++..+....
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEV 97 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHH
Confidence 45566667777777666555443
No 91
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.28 E-value=3.2 Score=40.29 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=36.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f 311 (520)
...|..+..++..++.++..+...+.....-+..|++|+.++.-.-+-+-.++..|..+-+++-.-|
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555555555555555555554433
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.27 E-value=16 Score=35.96 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhh
Q 010022 94 KIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 94 kI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre 163 (520)
+|-.++.+|..+......+..+.+.++.-..---..|.........+=..+....+++..|+..|++..+
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444444432111111122222333344445566777888888888876544
No 93
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.21 E-value=22 Score=37.48 Aligned_cols=141 Identities=20% Similarity=0.273 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhHHHHHHhhcc
Q 010022 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMAN-----AAMRAKIQESMGKKEDIQDQVKLMGS 246 (520)
Q Consensus 172 ~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~-----~~~~aki~es~~~ke~iqeqiK~l~~ 246 (520)
.|...+.|..+++.||. |-..+-.|.++|..--..+... ..--.++.++-.+...+.+-+-.+..
T Consensus 158 ~~~~le~Lq~Klk~LEe----------EN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 158 KCIQLEALQEKLKSLEE----------ENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTE 227 (306)
T ss_pred cchhHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 35567888888888886 2333334455554221111110 00001112222222333333444444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 322 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kar 322 (520)
+....+.++..+.++|-.+..+...+-.+-..|+..+.+.++..+.+-.++..|+..+.+...-|...+..++..|
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666677777777777777777777777778888888888888888888888887777777777776644
No 94
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.06 E-value=2.2 Score=44.74 Aligned_cols=32 Identities=38% Similarity=0.665 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 010022 176 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKV 217 (520)
Q Consensus 176 veEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v 217 (520)
.++++..+..|+. ||+.+++|+..|++.+..+
T Consensus 45 ~~~~~~el~~le~----------Ee~~l~~eL~~LE~e~~~l 76 (314)
T PF04111_consen 45 IEELEEELEKLEQ----------EEEELLQELEELEKEREEL 76 (314)
T ss_dssp -HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554 6777777777777776653
No 95
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.83 E-value=5.1 Score=36.01 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
...+...+..+.+|...-+.+..-++.|+.+..+++....++-.+|.+++..++...-.+.+....+.+
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555667777788888888888888888888888888777644444444444444
No 96
>PF13166 AAA_13: AAA domain
Probab=90.76 E-value=35 Score=39.02 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=11.6
Q ss_pred CCchHHHHHHHH-HHHHHHH
Q 010022 86 YDDPKIRAKIDL-TDREIQR 104 (520)
Q Consensus 86 pDd~~lkakI~~-a~keI~k 104 (520)
|.++.++.+|.. .+.....
T Consensus 265 ~l~~~~~~~l~~~f~~~~~~ 284 (712)
T PF13166_consen 265 PLSEERKERLEKYFDEEYEK 284 (712)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 566777777775 4554443
No 97
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.73 E-value=32 Score=38.41 Aligned_cols=128 Identities=22% Similarity=0.324 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHhHHhH--------------HHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAK----------RGVRGDLAAQLRSLKTEGRQYK--------------SVM 144 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~----------R~~R~eL~~qLk~Lr~q~k~~r--------------~~~ 144 (520)
..++..|..-+.+|+.|+..++.+...+... -++|-+|..+|.-+..+...++ ..+
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sl 412 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSL 412 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 5688889999999999999999888877653 3778788777766655444333 334
Q ss_pred HHHHHhhHHHHHHHhhh----hhhhcc------------ccC----CCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 010022 145 DDKRKEMEPLHQALGKL----RTTNNA------------RSG----GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQIL 204 (520)
Q Consensus 145 ~~K~kEi~~Lqe~L~kl----re~nnA------------rs~----~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklL 204 (520)
..+..+++.|...|+.. +.-+|. .+. ....+..++++.|..+=+..+..|++|.|-..-+
T Consensus 413 ek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~ 492 (622)
T COG5185 413 EKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNL 492 (622)
T ss_pred HHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhH
Confidence 44555666666655432 211111 110 1235678899999998899999999999886665
Q ss_pred H-HHHHHHHHHHH
Q 010022 205 R-EIKQLEGTREK 216 (520)
Q Consensus 205 k-EIsqL~k~Rk~ 216 (520)
+ -|+.|......
T Consensus 493 ~~~i~El~~~l~~ 505 (622)
T COG5185 493 KHDINELTQILEK 505 (622)
T ss_pred HhHHHHHHHHHHH
Confidence 5 34555555444
No 98
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.36 E-value=4.4 Score=33.57 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~ 314 (520)
|..++..++..++.+..++......+..|..+.+..-.....+|..+..|+.+.+.+-.++-.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666777777777777888888888888888888888888888888776664433
No 99
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.18 E-value=46 Score=39.42 Aligned_cols=130 Identities=16% Similarity=0.099 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhhhh--hhhhHHHHH
Q 010022 181 DLIRSLQYRIQHEIIP-LSEEKQILREIKQLEGTREKVMANAAMRA----------------KIQESMG--KKEDIQDQV 241 (520)
Q Consensus 181 ~rI~~LE~~IqhgSLs-L~EEKklLkEIsqL~k~Rk~v~a~~~~~a----------------ki~es~~--~ke~iqeqi 241 (520)
.+|..+=+..+|.+-. |.+++++-..-.-|.-.|+.+.-.-+... +++.+.- +.....+.|
T Consensus 214 D~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelV 293 (1265)
T KOG0976|consen 214 DQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELV 293 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3444444555555443 55566665555555555555332111111 1111111 122233445
Q ss_pred HhhccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 010022 242 KLMGSDLDGVKKESQAVWAKISHL----EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY 310 (520)
Q Consensus 242 K~l~~eIdeLKkeldalr~kIkel----~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~ 310 (520)
+.+..+|+++++-....-..+.+. .....++..++..|+-.|.+.+.+-...-+.+++|-+++|....+
T Consensus 294 k~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~d 366 (1265)
T KOG0976|consen 294 KELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMD 366 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 555556666555444333333222 222334555566666666666666666666667777776655443
No 100
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.14 E-value=2.2 Score=37.32 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDE---EIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~---ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
+.-.+..+++.++++.+.++..+..+.. +...|..+...++.+...+-..+..+..+++.
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333 34555555555555555555444444444443
No 101
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=90.01 E-value=33 Score=37.49 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 86 YDDPKIRAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 86 pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~ 117 (520)
.|+..+.+.+..++..+..+...+..+.+.++
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888887777766666655544
No 102
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.82 E-value=51 Score=39.37 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010022 176 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 176 veEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~ 216 (520)
..+|..+...|+..+++- +.......+=..++.|...+..
T Consensus 602 ~~~l~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~l~~~~~~ 641 (908)
T COG0419 602 LKELEERLSQLEELLQSL-ELSEAENELEEAEEELESELEK 641 (908)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777776 4333344444444444444444
No 103
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.80 E-value=56 Score=39.78 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=38.5
Q ss_pred CCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHH
Q 010022 85 QYDD---PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 85 ~pDd---~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L 158 (520)
+||+ +.|+.+=+.+..+|.++..+|. .+......+..|...|+-++-+..+.+-.+.....|+..+.+.|
T Consensus 648 ~wdek~~~~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i 720 (1141)
T KOG0018|consen 648 KWDEKEVDQLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEI 720 (1141)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 4566677777778887776444 33344444455555555555555444444444444554444443
No 104
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.44 E-value=5.1 Score=40.49 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHh
Q 010022 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWN 349 (520)
Q Consensus 271 al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn 349 (520)
++-+++..|+.++.++++....+-.....|-..++.+-.++|..+..+....+- +-..+-+.||-+|.
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~-----------~El~e~~~i~dl~~ 220 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG-----------VELPEEELISDLVK 220 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc-----------ccchHHHHHHHHHH
Confidence 333333333333333333333334444444444444444555555444443221 12345678999995
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.18 E-value=11 Score=39.78 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHhHHhHHHHHHHHHhhHHHHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLA----AQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~----~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L 158 (520)
+...+..++.-+-.+......|..++..++....++. +.|+.++++.......+..++.++..++..+
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444433333331 2334444444433334444444444433333
No 106
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=89.03 E-value=69 Score=39.84 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 270 KALDEEIEALQQEVNDVAEKRDKAFANIKE 299 (520)
Q Consensus 270 ~al~~ei~~LqeEl~al~~krdeay~~i~~ 299 (520)
....++...|..+++.+......++.....
T Consensus 1037 ~~~~ee~~~L~~~~~~l~se~~~~lg~~ke 1066 (1294)
T KOG0962|consen 1037 KSVKEERVKLEEEREKLSSEKNLLLGEMKQ 1066 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 333444555555555555555444444333
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.80 E-value=26 Score=34.66 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010022 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 324 (520)
Q Consensus 250 eLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karel 324 (520)
.+-.+-..+-+..+.++.....+-.++..|+++...+...++.+-.....|..+...+....|.|-..+.....+
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~ 152 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAI 152 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555666667777777777777777777777777666666666666666555554333
No 108
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.56 E-value=71 Score=39.40 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
+.-.+..+.+++++..++-..-..+-..+.+|-....++...+-++-.....+..
T Consensus 1593 ~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~ 1647 (1758)
T KOG0994|consen 1593 IRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEK 1647 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3334444555566666655555556666666666555555555555444444433
No 109
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.33 E-value=43 Score=36.58 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=45.2
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
+.....+|.......+..-..|.....+++...-.+..-.+.+.+=-.+-+.+-....-|--+.-.+..+|..|++....
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q 291 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQ 291 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555555555555665555555555545544444444444444445555556666666777777777766544
Q ss_pred H
Q 010022 321 A 321 (520)
Q Consensus 321 a 321 (520)
+
T Consensus 292 ~ 292 (499)
T COG4372 292 A 292 (499)
T ss_pred H
Confidence 3
No 110
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.19 E-value=39 Score=35.91 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010022 98 TDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLK 134 (520)
Q Consensus 98 a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr 134 (520)
+..++..+...|++...-...++.+.+.+.....++.
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666555555555555555444443
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.05 E-value=46 Score=36.62 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHH----hhhhhh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL----GKLRTT 164 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L----~klre~ 164 (520)
..+..+|+..+..|....+.+..+...|+....+-..+..+|...-.....++..+..-...+..|+..- +.+-..
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~ 120 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQ 120 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777666666655555555554444444333333333333333322211 011111
Q ss_pred hcc--c-cCC----CCCCHHHHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 010022 165 NNA--R-SGG----ICSSEEELD--DLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKV 217 (520)
Q Consensus 165 nnA--r-s~~----~fkSveEID--~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v 217 (520)
-+| + +.+ .-.|.++.. .++..+...|.++ ....|..|.+.+..+
T Consensus 121 L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~---------~~~~i~~l~~~~~~l 173 (420)
T COG4942 121 LAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPA---------RAERIDALKATLKQL 173 (420)
T ss_pred HHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHH---------HHHHHHHHHHHHHHH
Confidence 111 1 122 245666666 5566665555544 455566666665553
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.05 E-value=23 Score=33.13 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=24.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHH
Q 010022 116 LRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 116 i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L 158 (520)
|..+|.+.....+....+.++.+.+......+-.+|.+|+..+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKN 44 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666555555555555554444
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.04 E-value=8.5 Score=36.42 Aligned_cols=94 Identities=29% Similarity=0.444 Sum_probs=47.7
Q ss_pred ceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh--HHhHHHHHHHHHhhHHH
Q 010022 77 NFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG--RQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 77 ~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~--k~~r~~~~~K~kEi~~L 154 (520)
.+||+....++++. ...+..++.+|. .+.+++..++.....|.++|..|.+.. ..+...+.....++..|
T Consensus 57 kiY~~~Q~~~~~~s-~eel~~ld~ei~-------~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 57 KIYFANQDELEVPS-PEELAELDAEIK-------ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred EEEeeCccccCCCC-chhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 57887755444211 122333333333 223344444455555555555555543 34445555555666777
Q ss_pred HHHHhhhhhhhccccCCCCCCHHHHHHHHH
Q 010022 155 HQALGKLRTTNNARSGGICSSEEELDDLIR 184 (520)
Q Consensus 155 qe~L~klre~nnArs~~~fkSveEID~rI~ 184 (520)
.+.|..++. .....|++++..-..
T Consensus 129 ~~kL~~l~~------~~~~vs~ee~~~~~~ 152 (169)
T PF07106_consen 129 EEKLEKLRS------GSKPVSPEEKEKLEK 152 (169)
T ss_pred HHHHHHHHh------CCCCCCHHHHHHHHH
Confidence 777776654 123456766664433
No 114
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.77 E-value=28 Score=35.03 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=67.5
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHH
Q 010022 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA-----YFFQY 314 (520)
Q Consensus 240 qiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~-----~f~~~ 314 (520)
+-..+..++..+..+++.+...+..+...+...+.++..|+.+++.+...+.++.--+...-+.....-. ..-+.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR 129 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEER 129 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Confidence 3334455566778888888888888888888888888888888888888888888776666666655332 23345
Q ss_pred HHHHHHHHHHhhccCHHHH
Q 010022 315 RALLNEAKAMSVKKDVQGL 333 (520)
Q Consensus 315 r~~~~karela~~~~v~el 333 (520)
...+...+.+....++.-.
T Consensus 130 ~~Rl~~L~~~l~~~dv~~~ 148 (251)
T PF11932_consen 130 QERLARLRAMLDDADVSLA 148 (251)
T ss_pred HHHHHHHHHhhhccCCCHH
Confidence 6666777888888777664
No 115
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.73 E-value=69 Score=38.27 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q 010022 107 QARMQLMDELRAKRGVRGDLAAQLR 131 (520)
Q Consensus 107 q~R~~I~a~i~~~R~~R~eL~~qLk 131 (520)
+....+...+...+.....+..++.
T Consensus 171 ~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 171 KLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445544444
No 116
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.56 E-value=5.5 Score=45.86 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHhhcc
Q 010022 173 CSSEEELDDLIRSLQYRIQHEIIPLSEE-----KQILREIKQLEGTREKVMANAAMRAKIQESMG-KKEDIQDQVKLMGS 246 (520)
Q Consensus 173 fkSveEID~rI~~LE~~IqhgSLsL~EE-----KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~-~ke~iqeqiK~l~~ 246 (520)
+-+.+++|..+..|++.+-.-.-.++|+ .+++++|..+++....+.+-.+..-.+....+ .-..+.+++..+..
T Consensus 31 gE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~ 110 (660)
T KOG4302|consen 31 GESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKP 110 (660)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHH
Confidence 3455666666666666544333344443 67788888888877776554433211111111 12245566666666
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEAL--------QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~L--------qeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~ 318 (520)
-|.+++++.+.=++.++++..++..+-.+|..- -++.+=-..+-+++..+|+.|++++..-...+-.++..+
T Consensus 111 ~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I 190 (660)
T KOG4302|consen 111 YLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEI 190 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777776666666666666665554332 111222224555555666666666554444444444443
Q ss_pred H
Q 010022 319 N 319 (520)
Q Consensus 319 ~ 319 (520)
.
T Consensus 191 ~ 191 (660)
T KOG4302|consen 191 K 191 (660)
T ss_pred H
Confidence 3
No 117
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.41 E-value=6.7 Score=39.35 Aligned_cols=61 Identities=13% Similarity=0.327 Sum_probs=37.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
++.+.++.++..++.++.....+++..+++..+|.++.+.+..+-|.+-++=+.|+++.+-
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555555666666666666666666666666666666666666553
No 118
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.33 E-value=26 Score=32.96 Aligned_cols=126 Identities=21% Similarity=0.317 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHH-------HHHHHHHHHHHHHHHHH
Q 010022 199 EEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKE-------SQAVWAKISHLEGKVKA 271 (520)
Q Consensus 199 EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKke-------ldalr~kIkel~~k~~a 271 (520)
|+++.+.-...|+..+.. .+.+.+.|-.+-.+|..+... ...-++.|..+..++..
T Consensus 1 de~K~l~v~~kLK~~~~e-----------------~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~ 63 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESE-----------------KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEE 63 (140)
T ss_pred CcHHHHHHHHHHHHHHHh-----------------HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777766554 233333444433333333222 22233334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Q 010022 272 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMT 346 (520)
Q Consensus 272 l~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~ 346 (520)
+...++.|..+++.+...++.+-..+...+.+..++-..-..+...+..+..- ...+.+-+.+.|+....
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e-----k~q~~e~~~~~ve~L~~ 133 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE-----KVQLKEESKSAVEMLQK 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666665555555555555443332 44455555555554443
No 119
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.05 E-value=42 Score=35.04 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010022 202 QILREIKQLEGTREKVMA 219 (520)
Q Consensus 202 klLkEIsqL~k~Rk~v~a 219 (520)
++|..|..|+.+.+++..
T Consensus 15 ~aLqKIqelE~QldkLkK 32 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKK 32 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567778777777766533
No 120
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.99 E-value=6.9 Score=38.01 Aligned_cols=63 Identities=19% Similarity=0.368 Sum_probs=18.5
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 239 eqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LR 301 (520)
.++..+..++..++.++......|..+...+..+..++..|..++.+...-.+.+.+++..|.
T Consensus 95 ~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 95 QQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555444444444444444444444444444444433333333333333
No 121
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.51 E-value=8.8 Score=38.14 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 271 al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
..+..++.|..+...+..+-..+-+++..|+.+.+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 122
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.86 E-value=14 Score=36.06 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 010022 288 EKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 288 ~krdeay~~i~~LRkerde~n~~f~ 312 (520)
..|..+...+..|+.+...+..++-
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665444
No 123
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.84 E-value=74 Score=37.41 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 010022 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 316 (520)
Q Consensus 250 eLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~ 316 (520)
.++.++..+..++..+......-++.+..|..++..+...-.+....++..+++.-.....+++.=.
T Consensus 395 ~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYH 461 (717)
T PF09730_consen 395 RLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYH 461 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566665555555555566788888888888888888888888888777666554444433
No 124
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.61 E-value=72 Score=36.40 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTT 164 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~ 164 (520)
+.....++.++.+|..|.....+....+-..-.=--++..+--.|..+...+.+.++.-+-+|+.+++++++.+..
T Consensus 4 ~~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~ 79 (772)
T KOG0999|consen 4 PMAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ 79 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777766665444333333334555555666666666777778888899999999877643
No 125
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.32 E-value=63 Score=35.44 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=5.0
Q ss_pred chHHHHHHHHH
Q 010022 88 DPKIRAKIDLT 98 (520)
Q Consensus 88 d~~lkakI~~a 98 (520)
||.+-+.|..+
T Consensus 132 dP~~Aa~i~n~ 142 (498)
T TIGR03007 132 DPELAKDVVQT 142 (498)
T ss_pred CHHHHHHHHHH
Confidence 45544444433
No 126
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.19 E-value=9.8 Score=31.81 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=39.1
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
++.++..|..|..+...+..+--.....++.++..+..+...+..+....+.+-..+..|+...
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555666666665555555566666666666666666666666666666666666543
No 127
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.11 E-value=96 Score=37.39 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=10.3
Q ss_pred CcchhhhhccccccccCCCCCCC
Q 010022 9 PVESVAEVHNSLAQENGKLDKGP 31 (520)
Q Consensus 9 ~~~~~~~~~~~~~~en~~~~~~~ 31 (520)
|+-.+++|..+-+.-+|-...-|
T Consensus 153 PaSk~~e~~p~sl~ps~aAs~~~ 175 (1243)
T KOG0971|consen 153 PASKGVEGAPSSLGPSGAASVTP 175 (1243)
T ss_pred CcccccCCCccccCCCCcccccC
Confidence 44444544444444444444333
No 128
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.43 E-value=0.3 Score=56.27 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
.|..+++++..+..++.....+.+.+.-++..|.+++.++...++.+...+..|+...+++
T Consensus 364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555554445555555566666666666666666655555666544433
No 129
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.38 E-value=7 Score=39.54 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=52.9
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 243 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 243 ~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
.++.+++++.++-.++...+.++..++.++++++..|..++.-+...++.+-.+...|++..+++..
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 3455577777777888888888888888888888888888888888888888788888888887765
No 130
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=84.13 E-value=51 Score=33.41 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 281 QEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 281 eEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
.+...+......+|....+|.....++...|-..-..+.+
T Consensus 241 ~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~ 280 (296)
T PF13949_consen 241 KERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNK 280 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555556666666677777776666644433333333
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.13 E-value=56 Score=33.89 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh
Q 010022 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~ 159 (520)
|+..+..|..+...-..|-++|..+-..-.++..+++.+..+.......+..-..+|+.+.+.|.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555544443
No 132
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.52 E-value=10 Score=38.40 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhh
Q 010022 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLR 162 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klr 162 (520)
.-|.+..++++.|.+.|....+.|+........+-.-++.++.+....+..+.....++.+|.+.+..+|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666677766666666666666666666666666666666555555566666655555544
No 133
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=83.45 E-value=22 Score=36.84 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
+.+++-.+..+..|..---+.-+++..|..+|..+++.-=..|-++.-|..+.+..+.
T Consensus 203 k~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 203 KQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333334555666666777777776666666666666666665443
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.36 E-value=37 Score=32.39 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 010022 290 RDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 290 rdeay~~i~~LRkerde~n~ 309 (520)
......++..+...+.....
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~ 144 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEK 144 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 135
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=83.35 E-value=70 Score=34.40 Aligned_cols=139 Identities=16% Similarity=0.258 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC--CChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhcc
Q 010022 173 CSSEEELDDLIRSLQYRIQHEI--IPLS----EEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGS 246 (520)
Q Consensus 173 fkSveEID~rI~~LE~~IqhgS--LsL~----EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~ 246 (520)
...+.+||+||..||..|.+++ |+.. .-.-++.-|..|......+-. ...+++..+++.+..
T Consensus 208 la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~------------~~Ld~i~~rl~~L~~ 275 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP------------AKLDSIERRLKSLLS 275 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH------------HHHHHHHHHHHHHHH
Confidence 4568899999999999999943 3322 245666667777766554211 123444445555444
Q ss_pred chhhHHHHHHHH------HHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010022 247 DLDGVKKESQAV------WAKISHLEGKVKALD---EEIEALQQEVN---DVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 247 eIdeLKkeldal------r~kIkel~~k~~al~---~ei~~LqeEl~---al~~krdeay~~i~~LRkerde~n~~f~~~ 314 (520)
+++.|.+....+ ..+|.+|.+.+..++ .-++.|-..+. .|...=......+..|-.....+...+-.+
T Consensus 276 ~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~ 355 (388)
T PF04912_consen 276 ELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKW 355 (388)
T ss_pred HHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332222 223333333333222 22333333332 233333444455555555555555555555
Q ss_pred HHHHHHHHH
Q 010022 315 RALLNEAKA 323 (520)
Q Consensus 315 r~~~~kare 323 (520)
...+..+..
T Consensus 356 ~~~L~~ve~ 364 (388)
T PF04912_consen 356 EELLNKVEE 364 (388)
T ss_pred HHHHHHHHH
Confidence 555555433
No 136
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=83.35 E-value=1e+02 Score=36.19 Aligned_cols=275 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred ecCCCCCCcccCCCCccccCCCCCCCccccCCCCccccceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 39 FGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRA 118 (520)
Q Consensus 39 fgs~~~~~~~~~~~~~~~~~~~~p~da~~~~~~~~~~~~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~ 118 (520)
|+.|+ ..+..+.++-++-.+.-..-..+...+...+ +++....-.+|..++..+..+...-..+...++.
T Consensus 123 ~~~~~--~t~~~~~~~~~~~~t~~~t~~~~l~~~iee~--------~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~ 192 (698)
T KOG0978|consen 123 ALEHL--NTYGNGNGSLSGTITVNSTELEELRDEIEEL--------RELASTRMEELEKLQLYSDEILRQLDRFRVELRS 192 (698)
T ss_pred HhccC--CCCCCcccccCcccccchhhhhhhccchhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHhHHhHHHHHHHH---------HhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHH
Q 010022 119 KRGVRGDLAAQLRSLKTEGRQYKSVMDDKR---------KEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYR 189 (520)
Q Consensus 119 ~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~---------kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~ 189 (520)
..-....+.-.+..+. |+..+.-+. +.+..+-+.+.-.+...+-.+...-....+.|. +..+-+.
T Consensus 193 ~~~~~~~~~~e~~~~~-----~NE~l~~~~~~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-~~~in~e 266 (698)
T KOG0978|consen 193 LKEKVRSETFELRCLQ-----YNEELQRKTMESDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDL-FSSINRE 266 (698)
T ss_pred hhHHHHHHHHHHHHHH-----hhhhcccccchhhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-hhhHHHH
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHH-HH
Q 010022 190 IQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLE-GK 268 (520)
Q Consensus 190 IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~-~k 268 (520)
|-|=+-+|.+.-++|++ .++..+..-..|...+...+++.+.... .......+..++....+++..+. +-
T Consensus 267 ~~~L~Ssl~e~~~~l~~--~~~~~k~t~~~~~~lr~~~~s~~~~~~~-------~~~~~e~l~~~~~~~~~~~~~~~~~~ 337 (698)
T KOG0978|consen 267 MRHLISSLQEHEKLLKE--YERELKDTESDNLKLRKQHSSAADSLES-------KSRDLESLLDKIQDLISQEAELSKKL 337 (698)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhcccchHHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 010022 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSN 338 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~ 338 (520)
...+......++--++.+....+....-...=-......+..+-.++-.+...+.-+..+-+.+++.+|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q 407 (698)
T KOG0978|consen 338 RSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQ 407 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHH
No 137
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.07 E-value=15 Score=30.79 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 267 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 267 ~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
.+...+..+...|..+...+...++..+.+|+.|=...
T Consensus 32 e~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 32 EKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444455555555555555555555555554443
No 138
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.33 E-value=30 Score=35.82 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010022 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~ 319 (520)
++....++..++..++.+.+.-+.|..+++.-+.++.-.++.|..+...|=...++-..|-.+..+....|...=|.+.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~ 249 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLD 249 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3334444555555566655555566666666666666666666666666666666666666666665555544444333
No 139
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.21 E-value=8.9 Score=32.74 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHH
Q 010022 94 KIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDD 146 (520)
Q Consensus 94 kI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~ 146 (520)
.|.-++-+|..+++....+...++.++..|.+|..+...|++++..+...+..
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888888888888999999999999999888888765543
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.74 E-value=17 Score=35.57 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=53.9
Q ss_pred eeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHhHHhHHHHH
Q 010022 78 FYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKR------GVRGDLAAQLRSLKTEGRQYKSVMD 145 (520)
Q Consensus 78 ~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R------~~R~eL~~qLk~Lr~q~k~~r~~~~ 145 (520)
-||=-+|.-.--..+..++.+++++..+......+...|...+ .+|..+..++..|..+...++..+.
T Consensus 54 n~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 54 NYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred eEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666678999999999999999999999998888765 5677788888888888777776665
No 141
>PF13514 AAA_27: AAA domain
Probab=81.61 E-value=1.4e+02 Score=36.63 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 286 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al 286 (520)
.++.+..++..+...+..+...+..+..++..+..++..+
T Consensus 890 d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 890 DPDELEAELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555544
No 142
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.33 E-value=25 Score=30.67 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=11.9
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHH
Q 010022 242 KLMGSDLDGVKKESQAVWAKISHLE 266 (520)
Q Consensus 242 K~l~~eIdeLKkeldalr~kIkel~ 266 (520)
+.+..+++.++.+.+.+...|..+.
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3344445555555555555544443
No 143
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.11 E-value=19 Score=32.94 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhh
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAK----------RGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGK 160 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~----------R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~k 160 (520)
+.-++..++.++..+...|+.+.++|=.+ ..+...|..+++.|..+....-..+++|-++.+.|+.-|..
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455566666666666666655555332 23344445555555555555555566666666666555544
Q ss_pred hh
Q 010022 161 LR 162 (520)
Q Consensus 161 lr 162 (520)
++
T Consensus 108 lK 109 (120)
T PF12325_consen 108 LK 109 (120)
T ss_pred HH
Confidence 43
No 144
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.04 E-value=25 Score=29.38 Aligned_cols=12 Identities=42% Similarity=0.407 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 010022 279 LQQEVNDVAEKR 290 (520)
Q Consensus 279 LqeEl~al~~kr 290 (520)
|+.+..+.....
T Consensus 51 L~~e~~~~~~rl 62 (72)
T PF06005_consen 51 LKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 145
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.87 E-value=1.1e+02 Score=34.97 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010022 179 LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 179 ID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~ 216 (520)
|...+..|.++|.--.+|..|=+++-.|-.+|.+....
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666666655555555444
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.76 E-value=25 Score=36.98 Aligned_cols=111 Identities=17% Similarity=0.244 Sum_probs=56.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 324 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karel 324 (520)
..+|..+.++...+...+..++.....+..++..|+.+...+.......+...+.+.-+..+...+.....
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~--------- 119 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK--------- 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 34455566666666666666666666666666666666666666666655555555544433332211111
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCC
Q 010022 325 SVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRN 379 (520)
Q Consensus 325 a~~~~v~el~~~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R~~~~DGR~~~ 379 (520)
.--.+..+++++--..=-=++.|. | |.+--++|=.|=-+|
T Consensus 120 -------~q~~~~~~~L~~L~ktNv~n~~F~------I--~hdG~fGTINGlRLG 159 (314)
T PF04111_consen 120 -------NQYEYASNQLDRLRKTNVYNDTFH------I--WHDGPFGTINGLRLG 159 (314)
T ss_dssp -------HHHHHHHHHHHCHHT--TTTTT--------E--EEETTEEEETTEEE-
T ss_pred -------HHHHHHHHHHHHHHhcCchhceee------E--eecCCeeeECCeeec
Confidence 112234444555444433456773 2 334577777776666
No 147
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.71 E-value=79 Score=33.23 Aligned_cols=60 Identities=25% Similarity=0.477 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
+|..+|.++..+...|...+..+..++.++..+..++.++.+++.++-..|.++...+.+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666666666666666666666666666666553
No 148
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.47 E-value=1.1e+02 Score=34.76 Aligned_cols=156 Identities=17% Similarity=0.272 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccc
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNAR 168 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnAr 168 (520)
-.+++.++.+..++.+.......+ .++.+...-..+.+.|.++=+....--.+.+...+-+..|...|.++++-|
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~L--eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n--- 325 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQL--ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENN--- 325 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH---
Confidence 345666666666555444333332 344455555555555555544333222223333333344444554444321
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhc
Q 010022 169 SGGICSSEEELDDLIRSLQYRIQHEIIP---LSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMG 245 (520)
Q Consensus 169 s~~~fkSveEID~rI~~LE~~IqhgSLs---L~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~ 245 (520)
+-+-..|.++- ++--|+ +.==+++=++|+.|...-..|.++++.... ....+++.+..+.
T Consensus 326 --------~~L~~Eie~V~---~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~------~yS~lq~~l~~~~ 388 (570)
T COG4477 326 --------EHLKEEIERVK---ESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEV------AYSELQDNLEEIE 388 (570)
T ss_pred --------HHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cHHHHHHHHHHHH
Confidence 11222222221 122222 222255666777777777666555443221 2333444444444
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 010022 246 SDLDGVKKESQAVWAKISHLE 266 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~ 266 (520)
..|..+.++...++..+..|+
T Consensus 389 ~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 389 KALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444444444444
No 149
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.94 E-value=32 Score=34.29 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 206 EIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 285 (520)
Q Consensus 206 EIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~a 285 (520)
||+=|+.+++..- ..+..+..+|-.||..+...++.+......+..+...+.+-.-++..
T Consensus 11 EIsLLKqQLke~q--------------------~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ 70 (202)
T PF06818_consen 11 EISLLKQQLKESQ--------------------AEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEV 70 (202)
T ss_pred hHHHHHHHHHHHH--------------------HHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH
Confidence 7888888877631 12223344555566666666665555555555555544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 286 VAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 286 l~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
...+-+..-....-||.+...+..+....|..+..
T Consensus 71 ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 71 CENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred hHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 44444444444444444444444444444444333
No 150
>PRK11281 hypothetical protein; Provisional
Probab=79.86 E-value=1.6e+02 Score=36.37 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCChHHH
Q 010022 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEE 200 (520)
Q Consensus 172 ~fkSveEID~rI~~LE~~IqhgSLsL~EE 200 (520)
...|..+++.++.+++..++...-.|.+.
T Consensus 119 ~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 119 STLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888666544444443
No 151
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.63 E-value=1.3e+02 Score=35.48 Aligned_cols=10 Identities=30% Similarity=0.029 Sum_probs=5.5
Q ss_pred CCCCCHHHHH
Q 010022 171 GICSSEEELD 180 (520)
Q Consensus 171 ~~fkSveEID 180 (520)
.+..|.+|-+
T Consensus 627 ~P~LS~AEr~ 636 (717)
T PF10168_consen 627 LPVLSEAERE 636 (717)
T ss_pred CCCCCHHHHH
Confidence 3456766643
No 152
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.38 E-value=51 Score=32.16 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQ 331 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~ 331 (520)
-..+++=+..-.+|..-..-+...+.......+++......+-..+..|+.++......|+.....
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~-------------- 131 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEEN-------------- 131 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 333333333333444333444445555555555555555555556666666666555555544333
Q ss_pred HHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhh
Q 010022 332 GLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQL 371 (520)
Q Consensus 332 el~~~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R~~ 371 (520)
+-.|+++|=.++|.||-.=-.||..|.. +++.-.|=|
T Consensus 132 -~~~y~~~eh~rll~LWr~v~~lRr~f~e--lr~~TerdL 168 (182)
T PF15035_consen 132 -FNQYLSSEHSRLLSLWREVVALRRQFAE--LRTATERDL 168 (182)
T ss_pred -HHhhhcccccHHHHHHHHHHHHHHHHHH--HHHHHHhhH
Confidence 4568888999999999999999999987 666555543
No 153
>PF13166 AAA_13: AAA domain
Probab=78.90 E-value=1.3e+02 Score=34.55 Aligned_cols=6 Identities=33% Similarity=1.038 Sum_probs=2.4
Q ss_pred ccCCCC
Q 010022 67 EEWPEP 72 (520)
Q Consensus 67 ~~~~~~ 72 (520)
.+|..+
T Consensus 242 ~~Wv~~ 247 (712)
T PF13166_consen 242 SDWVEQ 247 (712)
T ss_pred hhHHHc
Confidence 344333
No 154
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.82 E-value=35 Score=31.55 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~ 298 (520)
|+.|-.++|+...-.+.+.+++..++..+..+..+++.+...-..+-.+|.
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444333333
No 155
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=78.31 E-value=1.2e+02 Score=34.03 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010022 279 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 315 (520)
Q Consensus 279 LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r 315 (520)
|++.++.++.-+.++...+..|-.+..+.++.|-..+
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~k 521 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSK 521 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555444433
No 156
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.17 E-value=20 Score=28.78 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~ 298 (520)
++.|-..+..|..+++.|..+++.|+.+...++++=..+...|+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555444444444
No 157
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.16 E-value=90 Score=34.76 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK 328 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~ 328 (520)
+.++.+.+.+.+.-+.++.++..++..++.++.++.+..+.=..+.++....+.+..+++.-+-..+.. ...
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s--------~d~ 435 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGS--------KDE 435 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 334444444444444444555555555555555555555444444444444444444433311111111 112
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCChHhH
Q 010022 329 DVQGLKELSNSEVEKYMTLWNNNKAFR 355 (520)
Q Consensus 329 ~v~el~~~~~~eve~fm~~wn~d~~FR 355 (520)
.+.+|++ ||--.|-+.-+...|-
T Consensus 436 ~I~dLqE----QlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 436 KITDLQE----QLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHH----HHHhHheehhhhhhhh
Confidence 3455554 5666777666655553
No 158
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=78.02 E-value=0.68 Score=52.66 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKAL--------DEEIEALQQEVNDVAEKRDKAFANI-KELRKQRDEGNAY 310 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al--------~~ei~~LqeEl~al~~krdeay~~i-~~LRkerde~n~~ 310 (520)
...++.+..++..||..|..-.+..... ..-|+.+..|++-+...+......+ ..+|.++.++++.
T Consensus 227 ~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~ 301 (619)
T PF03999_consen 227 EEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDK 301 (619)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777665444333311 2246677777777777666554443 5556655555543
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.66 E-value=16 Score=36.38 Aligned_cols=29 Identities=7% Similarity=0.247 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~ 117 (520)
|.....+..++.++.++++..+.+....+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555555555555555555544433
No 160
>PF13514 AAA_27: AAA domain
Probab=77.65 E-value=1.8e+02 Score=35.65 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=15.3
Q ss_pred hHhHHHHHHHhHH--HHhhhhhcc---CCCCCCCCCCccc
Q 010022 352 KAFRDDYEKRLLQ--SLDMRQLSR---DGRIRNPDEKPLV 386 (520)
Q Consensus 352 ~~FR~dY~k~~~~--s~~~R~~~~---DGR~~~pde~p~~ 386 (520)
..||..|.-..+. |-.-+.+|. .|-+.++|..+|+
T Consensus 971 ~~~r~~~~p~vl~~As~~f~~LT~G~Y~~l~~d~d~~~~~ 1010 (1111)
T PF13514_consen 971 ERYREERQPPVLARASEYFSRLTGGRYSRLRVDEDGDKPV 1010 (1111)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCCceeeeccccCccc
Confidence 3455555443322 223333443 2335566665544
No 161
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=77.53 E-value=1.9e+02 Score=35.82 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhh
Q 010022 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTT 164 (520)
Q Consensus 85 ~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~ 164 (520)
.|+...++.+|+++.+. +..+ ...+...++. -....++++...++...|+..+..-=+++..++..|..++..
T Consensus 22 ~p~~~~iq~~l~~~~~~--~~~~-~k~~~~~l~~----tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~ 94 (1109)
T PRK10929 22 APDEKQITQELEQAKAA--KTPA-QAEIVEALQS----ALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDE 94 (1109)
T ss_pred CCCHHHHHHHHHHhhcC--CChh-hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 47888899999987662 2211 2222222222 222334444444444555555555555555566555543221
Q ss_pred hccccCCCCCCHHHHHHHHHHHHHHHh
Q 010022 165 NNARSGGICSSEEELDDLIRSLQYRIQ 191 (520)
Q Consensus 165 nnArs~~~fkSveEID~rI~~LE~~Iq 191 (520)
......-.|..+|+.++.....+++
T Consensus 95 --~~~~~~~~s~~~Leq~l~~~~~~L~ 119 (1109)
T PRK10929 95 --PRSVPPNMSTDALEQEILQVSSQLL 119 (1109)
T ss_pred --cccccccCCHHHHHHHHHHHHHHHH
Confidence 1111123567888888887776633
No 162
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.35 E-value=69 Score=36.86 Aligned_cols=77 Identities=16% Similarity=0.339 Sum_probs=33.7
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 244 MGSDLDGVKKESQAVWAKISHLEGKVK---ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 244 l~~eIdeLKkeldalr~kIkel~~k~~---al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
+..+|.++++++..+++++..+...+. -++.++..+..+...|..+..+.+..+..|...+.. +++
T Consensus 441 L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~-----------l~k 509 (652)
T COG2433 441 LKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE-----------LRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 333444444444444444444443332 112233444444444444444444444444443332 234
Q ss_pred HHHHhhccCHH
Q 010022 321 AKAMSVKKDVQ 331 (520)
Q Consensus 321 arela~~~~v~ 331 (520)
.+.|..+|+..
T Consensus 510 ~~~lE~sG~g~ 520 (652)
T COG2433 510 MRKLELSGKGT 520 (652)
T ss_pred HHhhhhcCCCc
Confidence 55666677643
No 163
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=76.80 E-value=1.5e+02 Score=34.24 Aligned_cols=162 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhh
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGV----RGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTN 165 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~----R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~n 165 (520)
.+..++..+++.|..+....-.+..++--.+.. -...++++.-++.+....+..+..-..+...|...+.......
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhc
Q 010022 166 NARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMG 245 (520)
Q Consensus 166 nArs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~ 245 (520)
... ..++||+...-|.. .=++|++|-..-+.+.+
T Consensus 273 ~~~------~~~~i~~~~~~L~~--------------kd~~i~~L~~di~~~~~-------------------------- 306 (629)
T KOG0963|consen 273 KLA------KIDDIDALGSVLNQ--------------KDSEIAQLSNDIERLEA-------------------------- 306 (629)
T ss_pred hhc------cCCchHHHHHHHhH--------------HHHHHHHHHHHHHHHHH--------------------------
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
.+.+++......|+.|+.++.+....+..|..+++.- .--+++-++++-|+.
T Consensus 307 ----S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 307 ----SLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
No 164
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=76.24 E-value=1.9e+02 Score=35.23 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=16.8
Q ss_pred chhhhhcccccc-----ccCCC---CCCCCCCcceeecCCC
Q 010022 11 ESVAEVHNSLAQ-----ENGKL---DKGPVKDESIIFGSHG 43 (520)
Q Consensus 11 ~~~~~~~~~~~~-----en~~~---~~~~~~~~~i~fgs~~ 43 (520)
.+|+ |.+||+- =-|++ .-...+++-|.||+.-
T Consensus 50 pNGS-GKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~ 89 (1072)
T KOG0979|consen 50 PNGS-GKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDE 89 (1072)
T ss_pred CCCC-CchHHHHHHHHHcCCChhhccchhHHHHHHhcCCcc
Confidence 4666 6677665 22221 1112266777777743
No 165
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=76.17 E-value=74 Score=30.43 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 299 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~ 299 (520)
+..||+.||.+.-.|+-|......-..+|..-.+.+++.+.....+...+.+
T Consensus 86 v~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 86 VEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333
No 166
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.09 E-value=84 Score=30.98 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 010022 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 275 ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~ 312 (520)
+...|+.++..+..+-+.....+..|..+..-.++.|-
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~ 156 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFR 156 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 46788888888888888889999999988887777654
No 167
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.42 E-value=76 Score=30.18 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHhHH
Q 010022 331 QGLKELSNSEVEKYMTLWNNNKAFRD 356 (520)
Q Consensus 331 ~el~~~~~~eve~fm~~wn~d~~FR~ 356 (520)
..|=.-|...++..-.++..=..+|.
T Consensus 141 P~ll~Dy~~~~~~~~~l~~~i~~l~r 166 (177)
T PF13870_consen 141 PALLRDYDKTKEEVEELRKEIKELER 166 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443334443
No 168
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=75.25 E-value=48 Score=32.00 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010022 274 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS 325 (520)
Q Consensus 274 ~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela 325 (520)
.+...|..++..+..+...+-.++..|..+......+|......+..||.|+
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444455555555555555555555555554
No 169
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=74.19 E-value=68 Score=29.01 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 290 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~kr 290 (520)
.++.+++++.+..|..+.......++.|+.+++.+....
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333443333333333333333444444443333333
No 170
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.06 E-value=2e+02 Score=34.41 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 010022 92 RAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG 137 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~ 137 (520)
...|+.+.+....+...+-++.+++...-+.-..+-.++.-|+.+.
T Consensus 670 D~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 670 DYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444444444444444443
No 171
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=73.78 E-value=1.5e+02 Score=32.84 Aligned_cols=92 Identities=18% Similarity=0.315 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHH
Q 010022 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKE 254 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKke 254 (520)
+++++..+...|.+ ||++++++++.|.+...++-. .|.+++.+
T Consensus 177 ~~~~~~~e~~~l~~----------eE~~L~q~lk~le~~~~~l~~---------------------------~l~e~~~~ 219 (447)
T KOG2751|consen 177 SEEDLLKELKNLKE----------EEERLLQQLEELEKEEAELDH---------------------------QLKELEFK 219 (447)
T ss_pred chHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHH
Confidence 78888888888876 899999999999988776411 11222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
...+..+-...-..+....-..-..++++++|..+|.-.-.+++.|++.
T Consensus 220 ~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 220 AERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333444455555566678899999999999999999999986
No 172
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.53 E-value=1.1e+02 Score=30.92 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHH
Q 010022 175 SEEELDDLIRSLQYRIQHEIIPLSE 199 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~E 199 (520)
..++=-.+|..|...+..+.+|+.|
T Consensus 125 ~~~eR~~Rl~~L~~~l~~~dv~~~e 149 (251)
T PF11932_consen 125 LLEERQERLARLRAMLDDADVSLAE 149 (251)
T ss_pred ChHHHHHHHHHHHHhhhccCCCHHH
Confidence 3444455667777777777777664
No 173
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=73.47 E-value=1.5e+02 Score=32.52 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQL 112 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I 112 (520)
..+..++..++.++..+...+..+
T Consensus 100 ~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 100 QLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776655543
No 174
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=73.38 E-value=24 Score=34.37 Aligned_cols=71 Identities=30% Similarity=0.483 Sum_probs=41.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKA-----LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~a-----l~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~ 319 (520)
..+|..+++++..|+-+|..|...... ++.++++|.-+|+++..++.. ..+.=||++.+.+.
T Consensus 104 ~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~-------------~emeLyyecMkkL~ 170 (181)
T PF04645_consen 104 NLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREI-------------REMELYYECMKKLA 170 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHh
Confidence 345666666666666666555544442 333455555555555444432 44556888888888
Q ss_pred HHHHHhhcc
Q 010022 320 EAKAMSVKK 328 (520)
Q Consensus 320 karela~~~ 328 (520)
+|-+...++
T Consensus 171 ~a~~~esk~ 179 (181)
T PF04645_consen 171 KAHEVESKS 179 (181)
T ss_pred hhhhhhhcc
Confidence 887765554
No 175
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.12 E-value=1.7e+02 Score=32.76 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEI 276 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei 276 (520)
++.++.+.+-++..+..++.++..+..++
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544444433
No 176
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=71.96 E-value=21 Score=39.07 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 278 ALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 278 ~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
.|.++...++++...+-+.+..|..++++
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 177
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.78 E-value=1.1e+02 Score=30.51 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 284 NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 284 ~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
..+...-+.+...|..+|..++.....|-.-|+.+..=++
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe 173 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE 173 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666677777777777777777776444
No 178
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.29 E-value=2.2e+02 Score=33.55 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 262 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 262 Ikel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
+..|...+.+++++=.-|..-|.+=.....++|..+.+-|.|........+..-.++...+.
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666677777788889999988888888877777666666655443
No 179
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=70.98 E-value=1.6e+02 Score=31.85 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 010022 220 NAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISH 264 (520)
Q Consensus 220 ~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIke 264 (520)
+++.+..|.+....+..++.++.....+|..+.+.+..+..-|..
T Consensus 246 n~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~ 290 (384)
T PF03148_consen 246 NAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRD 290 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777777777777777777777777777766665543
No 180
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=70.96 E-value=22 Score=30.18 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 258 VWAKISHLEGKVKALDEEIEALQQ 281 (520)
Q Consensus 258 lr~kIkel~~k~~al~~ei~~Lqe 281 (520)
+|+.|+.+.++.++++..++.|..
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~ 32 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLES 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444433
No 181
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.95 E-value=2.1e+02 Score=33.30 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=25.2
Q ss_pred CchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHH
Q 010022 87 DDPKIRAKIDLTDREIQRR---NQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKS 142 (520)
Q Consensus 87 Dd~~lkakI~~a~keI~kl---~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~ 142 (520)
.||.+-+.|..+-.+.--- ...+........-+..+..++..++.....+...|+.
T Consensus 164 ~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 164 EDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567666665544332211 1111122223333445555555555555555555543
No 182
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=70.91 E-value=22 Score=28.52 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krde 292 (520)
|+.|-.+++.|..++..|...+..++.++...++|-..++..+|-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555656666666665555555553
No 183
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=70.57 E-value=1.4 Score=52.18 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhccchhhH--------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 010022 233 KKEDIQDQVKLMGSDLDGV--------KKESQAVWAKISHLEGKVKALDE-------EIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 233 ~ke~iqeqiK~l~~eIdeL--------Kkeldalr~kIkel~~k~~al~~-------ei~~LqeEl~al~~krdeay~~i 297 (520)
.+.++..+++.+...|+++ ++.+..+..+|.+|...++.-.. .+..+...+..+.-..++-..+.
T Consensus 715 ~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~ 794 (859)
T PF01576_consen 715 EKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNA 794 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 4555666777776666665 45666666777777776663332 24444555555555566666666
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 010022 298 KELRKQRDEGNAYFFQYRALLNEAKAMSVK 327 (520)
Q Consensus 298 ~~LRkerde~n~~f~~~r~~~~karela~~ 327 (520)
..+++..+.++...-.|++.+-.|.+.+..
T Consensus 795 ~~~~d~~~kl~~k~k~~krq~eeaEe~~~~ 824 (859)
T PF01576_consen 795 ERLQDLVDKLQLKLKQLKRQLEEAEEEASR 824 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 667777777777777777777776555544
No 184
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.53 E-value=2.6e+02 Score=34.25 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
+..+...++.+|+.+...+..-..++..|....+.+..+....-.....+..+
T Consensus 479 ~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k 531 (1195)
T KOG4643|consen 479 LEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNK 531 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555544444444333333333
No 185
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.31 E-value=61 Score=26.85 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 262 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 262 Ikel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
+..|...++.+.-++...+..++.+..+||.+...+...+.+.++
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~ 51 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNK 51 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443333333
No 186
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.46 E-value=1.5e+02 Score=31.05 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 274 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 274 ~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
++|..-.++|+.++..-=.-|-++.-|+.++|-
T Consensus 168 dEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd 200 (338)
T KOG3647|consen 168 DEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDD 200 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444555555555555555555666655554
No 187
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=69.11 E-value=1.6 Score=50.54 Aligned_cols=7 Identities=29% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCccccC
Q 010022 63 KDVGEEW 69 (520)
Q Consensus 63 ~da~~~~ 69 (520)
.|-+|.|
T Consensus 297 rDElD~l 303 (713)
T PF05622_consen 297 RDELDEL 303 (713)
T ss_dssp -------
T ss_pred hhhHHHH
Confidence 3555666
No 188
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.78 E-value=94 Score=28.38 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 275 ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
.+..+..++..+...+..+-......+...+.....|..-+..+.+
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~ 105 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEK 105 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444555555555555555555555555555555555444444443
No 189
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.16 E-value=3.1e+02 Score=34.10 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHHHhcC
Q 010022 174 SSEEELDDLIRSLQYRIQHE 193 (520)
Q Consensus 174 kSveEID~rI~~LE~~Iqhg 193 (520)
.+..+...++..++.++..+
T Consensus 144 q~~~~~~~~l~~i~~~L~~~ 163 (1109)
T PRK10929 144 QQQTEARRQLNEIERRLQTL 163 (1109)
T ss_pred hhHHHHHHHHHHHHHHHhCC
Confidence 45578888888888888774
No 190
>PRK10698 phage shock protein PspA; Provisional
Probab=67.88 E-value=47 Score=33.20 Aligned_cols=82 Identities=12% Similarity=0.196 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccC
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSG 170 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~ 170 (520)
|+..++.....+.+|+.....+..+|...+.++..|..+.+...++. .++..++.+. +.
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~---------------~~~~~~~~~~------~~ 162 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSR---------------DVRRQLDSGK------LD 162 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhCCC------cc
Confidence 44555555555555555555555555555666666655555554431 1222332211 11
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcC
Q 010022 171 GICSSEEELDDLIRSLQYRIQHE 193 (520)
Q Consensus 171 ~~fkSveEID~rI~~LE~~Iqhg 193 (520)
..+.--+.++.+|.++|.+.+..
T Consensus 163 ~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 163 EAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHh
Confidence 12333466788888888877653
No 191
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.67 E-value=17 Score=27.69 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 265 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 265 l~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
++..++.++..+++|..+.+.+..+.+.+...+..|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555544
No 192
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.64 E-value=2.2e+02 Score=32.19 Aligned_cols=6 Identities=0% Similarity=0.207 Sum_probs=3.6
Q ss_pred ceeeec
Q 010022 77 NFYFIR 82 (520)
Q Consensus 77 ~~yfvK 82 (520)
+.|||=
T Consensus 107 s~~~iN 112 (563)
T TIGR00634 107 SRAYLN 112 (563)
T ss_pred eEEEEC
Confidence 566663
No 193
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=67.51 E-value=38 Score=36.96 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 277 EALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 277 ~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
.+|.++...+.+++..+-..+..|..++
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 194
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=67.01 E-value=43 Score=29.10 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCC---ChHHH-HHHHHHHHHHHHHHHH
Q 010022 180 DDLIRSLQYRIQHEII---PLSEE-KQILREIKQLEGTREK 216 (520)
Q Consensus 180 D~rI~~LE~~IqhgSL---sL~EE-KklLkEIsqL~k~Rk~ 216 (520)
+..|.+||..+..+-. .+.+| +.+..||+-|+.+-+.
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~ 42 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH 42 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 3578899987744433 35566 7888899999877554
No 195
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.00 E-value=1.1e+02 Score=28.28 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=10.1
Q ss_pred HHHHHHHHhCChHhHHHHHHHh
Q 010022 341 VEKYMTLWNNNKAFRDDYEKRL 362 (520)
Q Consensus 341 ve~fm~~wn~d~~FR~dY~k~~ 362 (520)
|+-|.... .+-|.-|+.|-
T Consensus 126 ~~~Fl~~f---~~~R~~yH~R~ 144 (150)
T PF07200_consen 126 VDDFLKQF---KEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHH
Confidence 44454433 44566776653
No 196
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.91 E-value=48 Score=27.92 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHH
Q 010022 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVM 144 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~ 144 (520)
|.-++-+|..|++..+.+......++..|..|..+-..|.+++.++...+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777777777777777777777777665543
No 197
>PLN02320 seryl-tRNA synthetase
Probab=66.73 E-value=31 Score=38.81 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010022 207 IKQLEGTREKVMANAAMR 224 (520)
Q Consensus 207 IsqL~k~Rk~v~a~~~~~ 224 (520)
|+-++...+.|..+...+
T Consensus 69 ~k~ir~n~~~v~~~l~~R 86 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNR 86 (502)
T ss_pred HHHHHhCHHHHHHHHHhc
Confidence 444444444444444433
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.66 E-value=1.1e+02 Score=28.31 Aligned_cols=51 Identities=20% Similarity=0.479 Sum_probs=23.0
Q ss_pred hhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 233 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV 283 (520)
Q Consensus 233 ~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl 283 (520)
..+.+.+.+..+..+++.+...+..+..++..+...+.........++.++
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555445555555555444444444444443333333333333
No 199
>PRK10869 recombination and repair protein; Provisional
Probab=66.30 E-value=2.4e+02 Score=32.08 Aligned_cols=65 Identities=11% Similarity=-0.016 Sum_probs=36.0
Q ss_pred HHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHH
Q 010022 119 KRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQY 188 (520)
Q Consensus 119 ~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~ 188 (520)
.+..-+.+..+++.+..+...++.......++++-|+-.+.+|...+ ..+.-.++|..++..|.+
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~-----l~~gE~eeL~~e~~~L~n 219 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFA-----PQPGEFEQIDEEYKRLAN 219 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC-----CCCCcHHHHHHHHHHHHH
Confidence 44555555566666666666666555555666666666666654332 224445555555555443
No 200
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.25 E-value=95 Score=28.78 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=6.3
Q ss_pred hhHHHHHHhhccchhhH
Q 010022 235 EDIQDQVKLMGSDLDGV 251 (520)
Q Consensus 235 e~iqeqiK~l~~eIdeL 251 (520)
.++..+|..++..||+.
T Consensus 64 khLsqRId~vd~klDe~ 80 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQ 80 (126)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 33333333333333333
No 201
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=66.13 E-value=17 Score=30.84 Aligned_cols=47 Identities=17% Similarity=0.404 Sum_probs=22.9
Q ss_pred HHhhccchhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010022 241 VKLMGSDLDGVKKESQAVWAKISH---LEGKVKALDEEIEALQQEVNDVA 287 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~kIke---l~~k~~al~~ei~~LqeEl~al~ 287 (520)
|+....+.+.|+...+.++..+.. +.++++++...+..|+..+..+.
T Consensus 13 Ik~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 13 IKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555444332 55555555555555555544443
No 202
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.07 E-value=95 Score=27.44 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010022 201 KQILREIKQL 210 (520)
Q Consensus 201 KklLkEIsqL 210 (520)
..++.+++.|
T Consensus 37 ~~v~~eL~~l 46 (110)
T TIGR02338 37 EKALEELERL 46 (110)
T ss_pred HHHHHHHHcC
Confidence 3333333333
No 203
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.04 E-value=1.7e+02 Score=30.33 Aligned_cols=128 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGV----KKESQAVWAKISHLEGKVKALDEEI 276 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeL----Kkeldalr~kIkel~~k~~al~~ei 276 (520)
+.++++|...+.+ +...-..+-.+....+.-++.| .+.+...+..|.+.+ ++....+
T Consensus 23 ~~L~~~IqdtE~s----------------t~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~e---ek~e~~l 83 (258)
T PF15397_consen 23 KELIKEIQDTEDS----------------TALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWE---EKEESKL 83 (258)
T ss_pred HHHHHHHHhHHhh----------------HHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH---HHHHhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010022 277 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNA----YFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 277 ~~LqeEl~al~~krdeay~~i~~LRkerde~n~----~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
+.|+.+++.+.++++.+.+.++-|+.=.|.-.- .+.+..+.+..+++ ..+-...+|.+.|..+...|-..|
T Consensus 84 ~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~-~qqdEldel~e~~~~el~~l~~~~ 158 (258)
T PF15397_consen 84 SKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD-SQQDELDELNEMRQMELASLSRKI 158 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 204
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=65.60 E-value=3e+02 Score=33.09 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 265 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 265 l~~k~~al~~ei~~LqeEl~al~~krdeay~~i 297 (520)
|.+.+......+..++++|+.+..-|-.+...+
T Consensus 282 L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gds 314 (1265)
T KOG0976|consen 282 LGDELSQKEELVKELQEELDTLKQTRTRADGDS 314 (1265)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 333333444446666777777666665554443
No 205
>PRK10869 recombination and repair protein; Provisional
Probab=65.52 E-value=2.4e+02 Score=31.96 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhh
Q 010022 297 IKELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDM 368 (520)
Q Consensus 297 i~~LRkerde~n~~f~~~r~~~~karela~~--~~v~el~~~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~ 368 (520)
|+.|..++.---.++..++..+.+--+.... .+..+|+..+..--+.++.+=..-...|..+-+....++..
T Consensus 308 l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~ 381 (553)
T PRK10869 308 QISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITE 381 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443334444444444332222222 24666777666666677776667777787777766655543
No 206
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=65.42 E-value=1.1e+02 Score=27.94 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=50.5
Q ss_pred HHHHHHhhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 237 IQDQVKLMGSDLDGVKKESQAVW-----------AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 237 iqeqiK~l~~eIdeLKkeldalr-----------~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
+...++.+...|.+|.+++..+- ..++.++.-+..++..+..|+.-..-+..+.-+=|+.+..+.....
T Consensus 31 ~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~ 110 (132)
T PF10392_consen 31 ISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLE 110 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44445555555555555554432 2445666777788888888888888888888888888888888777
Q ss_pred hhhHH
Q 010022 306 EGNAY 310 (520)
Q Consensus 306 e~n~~ 310 (520)
.++.-
T Consensus 111 rl~~t 115 (132)
T PF10392_consen 111 RLHQT 115 (132)
T ss_pred HHHHH
Confidence 65543
No 207
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.46 E-value=1e+02 Score=32.28 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=34.1
Q ss_pred HhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 010022 149 KEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMA 219 (520)
Q Consensus 149 kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a 219 (520)
-||..|+..|.++|+ +=|+.+..+.|.++. |. .+=+||+||+.--+.+.+
T Consensus 89 tEI~eLksQL~RMrE-------------DWIEEECHRVEAQLA-----LK---EARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 89 TEIDELKSQLARMRE-------------DWIEEECHRVEAQLA-----LK---EARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH-----HH---HHHHHHHHHHHHHHHHHh
Confidence 356666667777763 457888888888754 43 455789999887666544
No 208
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=64.37 E-value=2e+02 Score=30.44 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMA 219 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a 219 (520)
+.+|.++..|+..|..+..
T Consensus 194 r~ll~kl~~lk~eR~~l~~ 212 (337)
T cd09234 194 KRILNKVNEMRKQRRSLEQ 212 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776544
No 209
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=63.81 E-value=26 Score=28.09 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdeay~~i 297 (520)
+++.++..+...++.++.++..+....+++-..+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333
No 210
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=63.73 E-value=73 Score=26.89 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
+.+-++.+..++..+..+...+-.+.+.+.+..+.-.+.-+..+.....+-.-...
T Consensus 31 ~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 31 VNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444455555555444443333
No 211
>smart00030 CLb CLUSTERIN Beta chain.
Probab=63.64 E-value=1.6e+02 Score=29.55 Aligned_cols=76 Identities=18% Similarity=0.356 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHH
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEK 343 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~ 343 (520)
+.+.-++.-.++-..|-.-|...+.+.++|.+..+ + ......+-+.+|+ +.
T Consensus 33 qMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~------------------------e--~e~kL~E~~~vCn---et 83 (206)
T smart00030 33 QIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTR------------------------E--SEEKLKESQGVCN---ET 83 (206)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------H--HHHHHHHHHHHHH---HH
Confidence 33334444555566666666666666655443332 2 2234566788896 78
Q ss_pred HHHHHhCChHhHHHHHHHhHHHHhhhhhccCCC
Q 010022 344 YMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGR 376 (520)
Q Consensus 344 fm~~wn~d~~FR~dY~k~~~~s~~~R~~~~DGR 376 (520)
+|++|- =-|--|.+||+|+-|+--|
T Consensus 84 m~alWe--------ECKpCLk~tCmkfYsr~Cr 108 (206)
T smart00030 84 MMALWE--------ECKPCLKQTCMKFYARVCR 108 (206)
T ss_pred HHHHHH--------HhHHHHHHHHHHHHHHhcC
Confidence 999993 3345688999999885544
No 212
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.45 E-value=3.6e+02 Score=33.20 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=45.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCC
Q 010022 305 DEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRI 377 (520)
Q Consensus 305 de~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R~~~~DGR~ 377 (520)
++.+..||+.....-+...-........+...|.+.-..|-+.-+..+.+=.+|.+-....+.+-..+.|+.+
T Consensus 717 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~ 789 (1041)
T KOG0243|consen 717 SELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIAL 789 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666555544444444455556667777777777775556667888888866666666666666654
No 213
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.30 E-value=3.9e+02 Score=33.52 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=6.6
Q ss_pred HHHHHHHHHhCChHhH
Q 010022 340 EVEKYMTLWNNNKAFR 355 (520)
Q Consensus 340 eve~fm~~wn~d~~FR 355 (520)
++-.+..-.+..++=|
T Consensus 701 ~~~e~~~~lseek~ar 716 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSAR 716 (1317)
T ss_pred HHHHHHHHhcccccHH
Confidence 3333333334444444
No 214
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.27 E-value=1.9e+02 Score=31.26 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 317 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~ 317 (520)
-|+.++.-+-.+|..++.++.++..+.+.+...+..+..++.+++..+-+-+..
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555554444444444444333
No 215
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=63.19 E-value=3.2e+02 Score=32.49 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCchHHHHHHHHHHHHHH
Q 010022 85 QYDDPKIRAKIDLTDREIQ 103 (520)
Q Consensus 85 ~pDd~~lkakI~~a~keI~ 103 (520)
.|-.+.+..+|+.|..+|+
T Consensus 454 ~~~~~~L~e~IeKLk~E~d 472 (762)
T PLN03229 454 KPSELALNEMIEKLKKEID 472 (762)
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 6778889999998888776
No 216
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.15 E-value=2.1e+02 Score=30.49 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 010022 330 VQGLKELSNSEVE 342 (520)
Q Consensus 330 v~el~~~~~~eve 342 (520)
+.+|+.+|.+=.|
T Consensus 274 ~sdLksl~~aLle 286 (319)
T PF09789_consen 274 ISDLKSLATALLE 286 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554433
No 217
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=63.04 E-value=1.5e+02 Score=28.56 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 010022 293 AFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 327 (520)
Q Consensus 293 ay~~i~~LRkerde~n~~f~~~r~~~~karela~~ 327 (520)
....-..||..||.+-...-+....+..|..++.+
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sq 130 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAENLVSQ 130 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344667777777777777777777777776554
No 218
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=62.99 E-value=1.3e+02 Score=29.63 Aligned_cols=6 Identities=50% Similarity=1.198 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010022 343 KYMTLW 348 (520)
Q Consensus 343 ~fm~~w 348 (520)
++..+|
T Consensus 163 ~~~~~w 168 (201)
T KOG4603|consen 163 KYCKEW 168 (201)
T ss_pred HHHHHH
Confidence 333344
No 219
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=62.69 E-value=2.1e+02 Score=30.31 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 197 LSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEI 276 (520)
Q Consensus 197 L~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei 276 (520)
...||++..|++.-++.|-.-...- ..+.. .+.+.+ --..||..|..+..|..+|.-....++++...|
T Consensus 91 yaWEKKLY~EVKa~E~~r~~yeKK~---~~Lr~-~d~kg~-------~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I 159 (312)
T PF04782_consen 91 YAWEKKLYDEVKAEEKLRIEYEKKC---KQLRK-QDAKGA-------DSSKIDKTRASVKDLHTRIRVAIQSVDSISKRI 159 (312)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHH---HHHHH-HHhCCc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998887632211 11111 111111 112356667777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHHHh
Q 010022 277 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR----ALLNEAKAMSVK---KDVQGLKELSNSEVEKYMTLWN 349 (520)
Q Consensus 277 ~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r----~~~~karela~~---~~v~el~~~~~~eve~fm~~wn 349 (520)
+.|.++ ++|-.|.+|-.-.-.+.+.-+++= ..+..++-+... .-..+.....-.|.|.-+..|+
T Consensus 160 ~kLRDe---------EL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~ 230 (312)
T PF04782_consen 160 EKLRDE---------ELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWH 230 (312)
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHH
Confidence 777664 788888888888777776555543 334444433222 3556677777777787788887
Q ss_pred CCh----HhHHHHHHHhHHHHhhhhh
Q 010022 350 NNK----AFRDDYEKRLLQSLDMRQL 371 (520)
Q Consensus 350 ~d~----~FR~dY~k~~~~s~~~R~~ 371 (520)
... ..=++|++.. .+-.++-+
T Consensus 231 ~sF~~~i~~Qk~YV~aL-n~WL~~~l 255 (312)
T PF04782_consen 231 SSFCKWIKAQKSYVKAL-NGWLKLCL 255 (312)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 654 4567898854 44455544
No 220
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.48 E-value=1.4e+02 Score=28.29 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
|.-+|.++..+...+..+...+......+..+.+++..+...|+.+......|+.+-.
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445666666777777777777777777888888888888888888888888877643
No 221
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.11 E-value=3.2e+02 Score=32.08 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhh
Q 010022 125 DLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (520)
Q Consensus 125 eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre 163 (520)
.|..+|..|.....+++....+++.++..|...+.+|..
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888999999999999999999888877654
No 222
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=62.03 E-value=1.8e+02 Score=29.35 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 010022 265 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 327 (520)
Q Consensus 265 l~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~ 327 (520)
+..+.+...++...|.+++..-..+-+.+-++-.+|++|.+.++.+|...-.+..+.++-...
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 445566667777777777777777777777777778888888888888777776666654443
No 223
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=61.82 E-value=1.5e+02 Score=28.38 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010022 280 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 280 qeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~ 318 (520)
..++..+..++|.+...|+.|..-...+-.+|-+.....
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~ 121 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAF 121 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444444443333
No 224
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.62 E-value=99 Score=26.56 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~L 300 (520)
...|..+...++.+++.--+.++.|
T Consensus 48 r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 48 REELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333
No 225
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=61.45 E-value=2.7 Score=49.85 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
.+.+...|.+++.+++.....+.++......+..++..|..++.........+......|..+
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~q 244 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQ 244 (859)
T ss_dssp ---------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555444444444444433333333333
No 226
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=61.20 E-value=1.8e+02 Score=33.17 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=13.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q 010022 299 ELRKQRDEGNAYFFQYRALLNEAK 322 (520)
Q Consensus 299 ~LRkerde~n~~f~~~r~~~~kar 322 (520)
.|+.-.+....+|.+...-+...+
T Consensus 289 ~i~~~~~~~~~~y~~~~p~i~~~~ 312 (555)
T TIGR03545 289 EIRKYLQKFLKYYDQAEPLLNKSK 312 (555)
T ss_pred HHHHHHHHHHHHHHHHhHhhccch
Confidence 445555555556666555555544
No 227
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=61.19 E-value=1.1e+02 Score=27.07 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=37.8
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 243 LMGSDLDGVKKESQAVWAKISHLEGKVKAL--DEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 243 ~l~~eIdeLKkeldalr~kIkel~~k~~al--~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
+.+.+++.+...++.....+..++.+++.+ .+++..|+-++..+....+.+-..++.+..+.+
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666655 556666666666666666666666655544433
No 228
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.80 E-value=85 Score=26.21 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 250 eLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdea 293 (520)
.|.+.....++.|+.|+.+.......+..+...+..+....+.+
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 229
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.64 E-value=1.3e+02 Score=27.46 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 261 KISHLEGKVKALDEEIEALQQEVNDV 286 (520)
Q Consensus 261 kIkel~~k~~al~~ei~~LqeEl~al 286 (520)
+++.+.+.++.+...+..++++++.+
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 230
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.08 E-value=60 Score=31.27 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 010022 274 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 274 ~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f 311 (520)
++.+.+.+++..+..+..++-.++..|++|-+..+.+|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555566666666667777766666554
No 231
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=60.07 E-value=2e+02 Score=29.12 Aligned_cols=65 Identities=9% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHH
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~L 154 (520)
..+..++.++.++..+...-..+..+.......-..+..........-..+...+......|..+
T Consensus 42 ~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 42 PQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444444444444444444333333333333333333334333
No 232
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=59.96 E-value=3.4e+02 Score=31.80 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010022 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~ 314 (520)
+..++..+..|..+...+...-++.+..+..+..+....+..|+..
T Consensus 250 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~ 295 (670)
T KOG0239|consen 250 LEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEK 295 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444433
No 233
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=59.91 E-value=72 Score=31.97 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---------HHHhhccCHHHH
Q 010022 263 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA---------KAMSVKKDVQGL 333 (520)
Q Consensus 263 kel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~ka---------rela~~~~v~el 333 (520)
+.+..-++.++..+...-..++.+.. |..|..|++...+....|-..|...+.| +....+.+|.+|
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TG-----Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTG-----YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHhCC
Q 010022 334 KEL----SNSEVEKYMTLWNNN 351 (520)
Q Consensus 334 ~~~----~~~eve~fm~~wn~d 351 (520)
=.- .-..+++|.+|.-+|
T Consensus 80 LqRK~sWs~~DleRFT~Lyr~d 101 (207)
T PF05546_consen 80 LQRKHSWSPADLERFTELYRND 101 (207)
T ss_pred HhcccCCChHHHHHHHHHHHhh
No 234
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=59.18 E-value=1.1e+02 Score=29.40 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=23.5
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVN 284 (520)
Q Consensus 239 eqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~ 284 (520)
+++-..+..+++.++.+..++.+|..|...++.+...|..+..+++
T Consensus 58 Ndlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~N 103 (157)
T COG3352 58 NDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFN 103 (157)
T ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344344455555666666666555555555555444444444333
No 235
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=59.09 E-value=3.1 Score=38.41 Aligned_cols=84 Identities=8% Similarity=0.208 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHH
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE---GNAYFFQYRALLNEAK 322 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde---~n~~f~~~r~~~~kar 322 (520)
..|+.++..+..+...+......+..+...++.....+..+......++.++..|....+- +...+-+-|..+..||
T Consensus 24 ~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR 103 (138)
T PF06009_consen 24 ENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQAR 103 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333333444444444445555555555555555555555555 6667777777777888
Q ss_pred HHhhccC
Q 010022 323 AMSVKKD 329 (520)
Q Consensus 323 ela~~~~ 329 (520)
+.|.+-.
T Consensus 104 ~~An~Ik 110 (138)
T PF06009_consen 104 DAANRIK 110 (138)
T ss_dssp -------
T ss_pred HHHhhee
Confidence 8777643
No 236
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=58.34 E-value=3.8e+02 Score=31.85 Aligned_cols=22 Identities=5% Similarity=0.176 Sum_probs=14.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 010022 85 QYDDPKIRAKIDLTDREIQRRN 106 (520)
Q Consensus 85 ~pDd~~lkakI~~a~keI~kl~ 106 (520)
.+.+-.|..+++.++++|-+.+
T Consensus 428 ~~~~~~Le~elekLk~eilKAk 449 (762)
T PLN03229 428 KTPVRELEGEVEKLKEQILKAK 449 (762)
T ss_pred CCCCccHHHHHHHHHHHHHhcc
Confidence 3445567777777777776654
No 237
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.24 E-value=1.6e+02 Score=27.28 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 010022 202 QILREIKQLEGTR 214 (520)
Q Consensus 202 klLkEIsqL~k~R 214 (520)
.+|.=|-.|=..|
T Consensus 35 ~vin~i~~Ll~~~ 47 (151)
T PF11559_consen 35 RVINCIYDLLQQR 47 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 238
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.00 E-value=1.2e+02 Score=34.89 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010022 86 YDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSL 133 (520)
Q Consensus 86 pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~L 133 (520)
++-..+...|..+...+..+......+...+..++.....|.++|..+
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444444444444444444444444433
No 239
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.97 E-value=1.5e+02 Score=27.02 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 267 GKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 267 ~k~~al~~ei~~LqeEl~al~~krdeay~~i 297 (520)
++++.+...+..|+.++..+....+.+...+
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 240
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=57.41 E-value=1e+02 Score=26.75 Aligned_cols=56 Identities=14% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010022 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~ 318 (520)
+++.+.+.+..|+.+.+.+..+++.++...++++.+=..+...|+ |-.||..-|-+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD---------N~~~~~~~~~~ 80 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD---------AQDYFDCLRCL 80 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHH
Confidence 344444444445555555555566666666666655555555554 33566654433
No 241
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.05 E-value=3.6e+02 Score=31.07 Aligned_cols=13 Identities=0% Similarity=-0.084 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 010022 335 ELSNSEVEKYMTL 347 (520)
Q Consensus 335 ~~~~~eve~fm~~ 347 (520)
.-|.+||..|+..
T Consensus 538 ~ki~~ql~~~i~~ 550 (581)
T KOG0995|consen 538 QKIAKQLFAVIDQ 550 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455444443
No 242
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.00 E-value=61 Score=35.50 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKI 262 (520)
Q Consensus 248 IdeLKkeldalr~kI 262 (520)
++.|+.+++.+...|
T Consensus 44 ~~~lr~~rn~~sk~i 58 (425)
T PRK05431 44 LEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 243
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=56.47 E-value=1.2e+02 Score=25.64 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
+..+..+++.+......+-+.+.++.+
T Consensus 71 ~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 71 IEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 244
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=56.27 E-value=3.5e+02 Score=30.78 Aligned_cols=235 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHH----HHHHHHhhHHHHHHHhhhhhh
Q 010022 90 KIRAKIDLTDREIQRRNQARM-QLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSV----MDDKRKEMEPLHQALGKLRTT 164 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~-~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~----~~~K~kEi~~Lqe~L~klre~ 164 (520)
.+.+-+..+.+.+...+...+ -+.+.+++...+=.-+-+++..|-.....|-+. -+--.++....-+.|..+...
T Consensus 269 ~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqi 348 (531)
T PF15450_consen 269 KLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQI 348 (531)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHH
Q ss_pred hccccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 010022 165 NNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLM 244 (520)
Q Consensus 165 nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l 244 (520)
-...-...-..+-+||.+|-.|-|++.| .|+-+=.-|+.+...-. ..+..++......++.+...
T Consensus 349 le~sv~~l~~~lkDLd~~~~aLs~rld~------qEqtL~~rL~e~~~e~~---------~~~r~~lekl~~~q~e~~~~ 413 (531)
T PF15450_consen 349 LEDSVAELMRQLKDLDDHILALSWRLDL------QEQTLNLRLSEAKNEWE---------SDERKSLEKLDQWQNEMEKH 413 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 324 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karel 324 (520)
+.+++.+++.+-..|.+++++..-++.+.+.. |..+=..-|-.+.++|.++..+....--.+...-..+.-
T Consensus 414 ---l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~k------IdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkia 484 (531)
T PF15450_consen 414 ---LKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTK------IDTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIA 484 (531)
T ss_pred ---HHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHH
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHhCChHh
Q 010022 325 SVKKDVQGLKELSNSEVEKYMTLWNNNKAF 354 (520)
Q Consensus 325 a~~~~v~el~~~~~~eve~fm~~wn~d~~F 354 (520)
.-+|+++ .+++-+.=+....++..
T Consensus 485 eiqg~l~------~~qi~kle~siq~nKti 508 (531)
T PF15450_consen 485 EIQGKLA------TNQIMKLENSIQTNKTI 508 (531)
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHH
No 245
>PHA03395 p10 fibrous body protein; Provisional
Probab=55.44 E-value=33 Score=29.89 Aligned_cols=39 Identities=15% Similarity=0.400 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKI---SHLEGKVKALDEEIEALQQEVND 285 (520)
Q Consensus 247 eIdeLKkeldalr~kI---kel~~k~~al~~ei~~LqeEl~a 285 (520)
+++.|+...+.++..+ .+|.+++++....+..++..++.
T Consensus 19 KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~ 60 (87)
T PHA03395 19 KVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDN 60 (87)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444444444332 23333444444444444444333
No 246
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=55.26 E-value=1.3e+02 Score=26.18 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHhHHHH
Q 010022 331 QGLKELSNSEVEKYMTLWNNNKAFRDDY 358 (520)
Q Consensus 331 ~el~~~~~~eve~fm~~wn~d~~FR~dY 358 (520)
.+...|.+.||..||....+..++|.-|
T Consensus 58 ~e~~~lT~~E~~~ll~~~~~~~~~~~~~ 85 (86)
T PF12958_consen 58 PEPKDLTNDEFYELLEFLFHLPEVQEAL 85 (86)
T ss_pred hcchhcCHHHHHHHHHHHHcCHHHHHhh
Confidence 3456678899999999999998888755
No 247
>PLN02678 seryl-tRNA synthetase
Probab=55.21 E-value=64 Score=35.81 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 010022 203 ILREIKQLEGTREK 216 (520)
Q Consensus 203 lLkEIsqL~k~Rk~ 216 (520)
+|.+|-+|...|..
T Consensus 31 ~id~il~ld~~~r~ 44 (448)
T PLN02678 31 LVDEVIALDKEWRQ 44 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665554
No 248
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.97 E-value=3.3e+02 Score=30.26 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Q 010022 286 VAEKRDKAFANIKELRKQRDEGNA---YFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMT 346 (520)
Q Consensus 286 l~~krdeay~~i~~LRkerde~n~---~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~ 346 (520)
+...|=....+|.+|+.+.-+..+ .+..-|+.++-+..++....--.|..+.-.+|...|.
T Consensus 88 ~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~s~~ga~~ 151 (459)
T KOG0288|consen 88 AENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKDLGLKDLRRQSVDGAVP 151 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcCCCc
Confidence 333344445555555555443332 4444455555544444433333333333344444443
No 249
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.94 E-value=1.9e+02 Score=27.28 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=35.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY 310 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~ 310 (520)
++|..|+.++..+...++.+...+..+..+...|..++.....+..++-.....+..-+..+-..
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555555566665555555555555555555555555555555555555555555444444443
No 250
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=54.70 E-value=1.1e+02 Score=25.90 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010022 260 AKISHLEGKVKALDEEIEALQQEVNDVA-----EKRDKAFANIKELRKQRDEGNAYFFQYR 315 (520)
Q Consensus 260 ~kIkel~~k~~al~~ei~~LqeEl~al~-----~krdeay~~i~~LRkerde~n~~f~~~r 315 (520)
.-|+.+.+.+.-++-++..|+++++.+. ..|..+-.+|..|=+..+.+...+|...
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555544444443 4666666777777777777666666543
No 251
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.67 E-value=4.2e+02 Score=31.14 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 261 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 261 kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
.++.+......++.+++.|+.++..+...-..+-.....+..
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~ 269 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTR 269 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443333333333
No 252
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=53.94 E-value=2.5e+02 Score=28.38 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAK----ISHLEGKVKALDEEI 276 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~k----Ikel~~k~~al~~ei 276 (520)
.-+|.++.++=+.+..+..++.. .+.+.+..+..++..++|.......+ +...-+.++..+..|
T Consensus 68 ~~iL~ete~~A~~~~~~ae~l~~------------~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y 135 (237)
T cd07657 68 KEIMDSTDQLSKLIKQHAEALES------------GTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEY 135 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777765444321 12233333444444455544443332 233334455555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010022 277 EALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 277 ~~LqeEl~al~~krdeay~~i 297 (520)
.....+...+..+-++++...
T Consensus 136 ~~~~~e~e~Ar~k~e~a~~~~ 156 (237)
T cd07657 136 QKLLEDYKAAKSKFEEAVVKG 156 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666666665543
No 253
>PLN02678 seryl-tRNA synthetase
Probab=53.92 E-value=81 Score=35.00 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=29.3
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 244 MGSDLDGVKKESQAVWAKISHLEGKVKALD---EEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 244 l~~eIdeLKkeldalr~kIkel~~k~~al~---~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
+..+.-.+..+++.++.+.+.+.+++..+. ++...|.++...+.+++..+-..+..|..++.+
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555554444444443321 234445555555555555555555555554443
No 254
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=53.73 E-value=1.7e+02 Score=26.45 Aligned_cols=25 Identities=16% Similarity=-0.009 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q 010022 295 ANIKELRKQRDEGNAYFFQYRALLN 319 (520)
Q Consensus 295 ~~i~~LRkerde~n~~f~~~r~~~~ 319 (520)
.....|...+......|.......+
T Consensus 88 ~q~~~L~~~f~~~m~~fq~~Q~~~~ 112 (151)
T cd00179 88 TQHSGLSKKFVEVMTEFNKAQRKYR 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666555555555554443
No 255
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.37 E-value=1.6e+02 Score=25.99 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010022 209 QLEGTRE 215 (520)
Q Consensus 209 qL~k~Rk 215 (520)
.++.++.
T Consensus 11 ~~q~~q~ 17 (110)
T TIGR02338 11 QLQQLQQ 17 (110)
T ss_pred HHHHHHH
Confidence 3333333
No 256
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.17 E-value=4.9e+02 Score=31.57 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 010022 329 DVQGLKELSNSEVEKYMTLWN 349 (520)
Q Consensus 329 ~v~el~~~~~~eve~fm~~wn 349 (520)
++.-+.+-+++++..+|...-
T Consensus 516 ~~~~~~qs~~~~~~~l~~~l~ 536 (980)
T KOG0980|consen 516 TLSNLAQSHNNQLAQLEDLLK 536 (980)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 355566667777777776653
No 257
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.75 E-value=3e+02 Score=28.96 Aligned_cols=78 Identities=10% Similarity=0.136 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Q 010022 262 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEV 341 (520)
Q Consensus 262 Ikel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~ev 341 (520)
|+.+.-.+...++.++....+..++-.++..-..++..+|+.+..+..--=.+... +..--.+|+.++..=|
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdE--------yE~~EeeLqkly~~Y~ 185 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDE--------YEDCEEELQKLYQRYF 185 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH--------HHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555544444311111111 1122346777777777
Q ss_pred HHHHHH
Q 010022 342 EKYMTL 347 (520)
Q Consensus 342 e~fm~~ 347 (520)
.+|..+
T Consensus 186 l~f~nl 191 (338)
T KOG3647|consen 186 LRFHNL 191 (338)
T ss_pred HHHhhH
Confidence 777765
No 258
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=52.64 E-value=1.8e+02 Score=26.33 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCCCCCC
Q 010022 330 VQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 383 (520)
Q Consensus 330 v~el~~~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~ 383 (520)
.+--...|..=..+|...++.=-.-..+|..+. .....|+ -++.|||--
T Consensus 83 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~-k~~i~Rq----~~i~~~~~t 131 (151)
T cd00179 83 DRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERY-KERIQRQ----LEITGGEAT 131 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHcCCCCC
Confidence 333445555566667776665555555665555 3334444 245666543
No 259
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.13 E-value=3.4e+02 Score=29.36 Aligned_cols=85 Identities=16% Similarity=0.307 Sum_probs=37.2
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHH
Q 010022 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN------AYFF 312 (520)
Q Consensus 239 eqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n------~~f~ 312 (520)
.+-+-++..+..+-.+....+.++.++..++...+.-+..+..+|..|.++.+ ..+.+.++.- +-.-
T Consensus 259 sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe-------~vK~emeerg~~mtD~sPlv 331 (359)
T PF10498_consen 259 SREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE-------QVKQEMEERGSSMTDGSPLV 331 (359)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCCCCCCCHHH
Confidence 33344444444444444444444444444444444444444444433333333 3333333332 2344
Q ss_pred HHHHHHHHHHHHhhccCH
Q 010022 313 QYRALLNEAKAMSVKKDV 330 (520)
Q Consensus 313 ~~r~~~~karela~~~~v 330 (520)
+-+..+.+.+.-....|+
T Consensus 332 ~IKqAl~kLk~EI~qMdv 349 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDV 349 (359)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 455555555554444443
No 260
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.08 E-value=74 Score=26.30 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTE 136 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q 136 (520)
.+..+|+.+=.-...++..-..+...+.....+|..|++.+...++.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666555444
No 261
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=51.72 E-value=2.5e+02 Score=27.80 Aligned_cols=24 Identities=8% Similarity=-0.105 Sum_probs=15.3
Q ss_pred HhHHHHHHHhHHHHhhhhhccCCC
Q 010022 353 AFRDDYEKRLLQSLDMRQLSRDGR 376 (520)
Q Consensus 353 ~FR~dY~k~~~~s~~~R~~~~DGR 376 (520)
.+...|+..-++.++.++...++.
T Consensus 193 ~~~~~~y~~~~p~~~~~~q~le~~ 216 (251)
T cd07653 193 KEQRQHYSTDLPQIFDKLQELDEK 216 (251)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhHH
Confidence 455666666677777776666643
No 262
>PHA03395 p10 fibrous body protein; Provisional
Probab=51.58 E-value=73 Score=27.83 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 010022 258 VWAKISHLEGKVKALDEEIEALQQEV---NDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 258 lr~kIkel~~k~~al~~ei~~LqeEl---~al~~krdeay~~i~~LRkerd 305 (520)
+|+-|+++.+++++++..++.++..+ .+++.+.+..-..+..+....+
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~ 59 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVD 59 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55556666666666666555555433 3444444444444444444333
No 263
>PRK11546 zraP zinc resistance protein; Provisional
Probab=51.47 E-value=53 Score=31.11 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 010022 289 KRDKAFANIKELRKQRDE 306 (520)
Q Consensus 289 krdeay~~i~~LRkerde 306 (520)
++..+..+|..||.+.++
T Consensus 90 kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 90 KINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 264
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=51.09 E-value=2.1e+02 Score=31.05 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEG--KVKALDEEIEALQQEVNDV-----AEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~--k~~al~~ei~~LqeEl~al-----~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
|..+++.+..+...+..+.. .++.+..++..|..++..- .++-.++..++..|....+... .|.+...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~-~~~~~~~d~~~ 80 (364)
T TIGR00020 2 INEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLE-ELKNSLEDLSE 80 (364)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444444444444444432 2234444555555444321 1223334444444444444333 25555666666
Q ss_pred HHHHhhccCHHHHHHHHHHHHHHHHH
Q 010022 321 AKAMSVKKDVQGLKELSNSEVEKYMT 346 (520)
Q Consensus 321 arela~~~~v~el~~~~~~eve~fm~ 346 (520)
+.+|+....-.++.+++..|+...-.
T Consensus 81 l~el~~~e~D~e~~~~a~~e~~~l~~ 106 (364)
T TIGR00020 81 LLELAVEEDDEETFNELDAELKALEK 106 (364)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 66666443335666666666655433
No 265
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=51.09 E-value=1.4e+02 Score=34.90 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCCccccCCCCcc
Q 010022 61 LPKDVGEEWPEPRV 74 (520)
Q Consensus 61 ~p~da~~~~~~~~~ 74 (520)
.|.+++..|..-.+
T Consensus 337 sPe~l~~~l~~lq~ 350 (722)
T PF05557_consen 337 SPEDLARALVQLQQ 350 (722)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHHH
Confidence 35555555554443
No 266
>PHA03011 hypothetical protein; Provisional
Probab=51.06 E-value=1.2e+02 Score=27.30 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY 310 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~ 310 (520)
..++++...++.++. ++..+.++++-+.-+.+.+-.-+++--+++--||.+.|.+...
T Consensus 57 GD~Nai~e~ldeL~~-------qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 57 GDINAIIEILDELIA-------QYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred ccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 345555555555554 4556666677777777777777777778888888888876543
No 267
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=50.97 E-value=1.3e+02 Score=24.18 Aligned_cols=56 Identities=23% Similarity=0.378 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhC
Q 010022 291 DKAFANIKELRKQRDEGN-AYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNN 350 (520)
Q Consensus 291 deay~~i~~LRkerde~n-~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~ 350 (520)
+.+|..+.++...++... ..+-.....+.+++.|+...+.. -+..++..++..|+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~----~~~~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 12 DAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWK----EAAEEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH----HHHHHHHHHHHHHHH
Confidence 344444555555444333 35556666777888888877733 334556677777754
No 268
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.02 E-value=1.2e+02 Score=35.00 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=49.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
.+|.++..+++.+.+.|.+++.++++++..|..-|-++.+++..+..+--.+.+|+.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3466777778888888888999999999999999999999999999888888888876
No 269
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.82 E-value=2.6e+02 Score=33.86 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARM-----QLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVM 144 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~-----~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~ 144 (520)
+-..+..++.+|+.+..... .+.+.|+.++.+-..+.+.++++..+...++..+
T Consensus 328 ~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~ 386 (913)
T KOG0244|consen 328 KSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERSTL 386 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhh
Confidence 33444444444444433332 2446777777777777777777766665555544
No 270
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.31 E-value=4.7e+02 Score=30.15 Aligned_cols=10 Identities=20% Similarity=0.611 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 010022 339 SEVEKYMTLW 348 (520)
Q Consensus 339 ~eve~fm~~w 348 (520)
++|++.+++.
T Consensus 442 aevdrlLeil 451 (654)
T KOG4809|consen 442 AEVDRLLEIL 451 (654)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 271
>PTZ00464 SNF-7-like protein; Provisional
Probab=48.82 E-value=2.5e+02 Score=28.13 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDEL 116 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i 116 (520)
..+..++..+++.|.++.......+..+
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666655444444333
No 272
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=48.46 E-value=99 Score=33.80 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 010022 204 LREIKQLEGTREK 216 (520)
Q Consensus 204 LkEIsqL~k~Rk~ 216 (520)
|.+|-.|...|..
T Consensus 29 vd~i~~ld~~~r~ 41 (418)
T TIGR00414 29 LEKLIALDDERKK 41 (418)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 273
>PRK15396 murein lipoprotein; Provisional
Probab=48.44 E-value=1.1e+02 Score=26.05 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 299 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~ 299 (520)
++.|.+++..|..+.+.+..+++.+.....+++++=..+...|+.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555444443
No 274
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.11 E-value=2.1e+02 Score=25.88 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 010022 206 EIKQLEGTREKV 217 (520)
Q Consensus 206 EIsqL~k~Rk~v 217 (520)
+|..|+.++..+
T Consensus 12 ~~~~~q~lq~~l 23 (121)
T PRK09343 12 QLAQLQQLQQQL 23 (121)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 275
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=47.80 E-value=94 Score=27.91 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 265 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 265 l~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~L 300 (520)
+.+.+.+|+..+..|-+|...+.-+-+.++..+..+
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444333333
No 276
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.08 E-value=1.8e+02 Score=32.39 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 010022 206 EIKQLEGTRE 215 (520)
Q Consensus 206 EIsqL~k~Rk 215 (520)
+|..|++...
T Consensus 72 ~~~~l~~~l~ 81 (525)
T TIGR02231 72 RLAELRKQIR 81 (525)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 277
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=47.06 E-value=2.5e+02 Score=30.23 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh--------HHhHHHHHHHHHhhHHHHHHHhhhh
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG--------RQYKSVMDDKRKEMEPLHQALGKLR 162 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~--------k~~r~~~~~K~kEi~~Lqe~L~klr 162 (520)
+..-|+-+-..+..+...-..+...-..++.....+..+|..+.... ..|...+++|...|..|+..|...+
T Consensus 128 i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 128 IRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 55666666555555554444444444555666666666665554332 4666778888888888877776544
No 278
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.69 E-value=5.2e+02 Score=29.93 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=21.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhh
Q 010022 473 EGMERKRKKEEAKVAKAALRAEKQRK 498 (520)
Q Consensus 473 ~a~eRKkk~aeka~aka~~raqkea~ 498 (520)
++++|+-++.|+-+|=+.+.++++-+
T Consensus 357 ~~~er~~~l~e~v~al~rlq~~~d~k 382 (772)
T KOG0999|consen 357 EQRERVDRLTEHVQALRRLQDSKDKK 382 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence 46888888899888888888888774
No 279
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=46.47 E-value=3.1e+02 Score=27.21 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHh----------cCCCChHHHHHHHHHHHHHHH
Q 010022 173 CSSEEELDDLIRSLQYRIQ----------HEIIPLSEEKQILREIKQLEG 212 (520)
Q Consensus 173 fkSveEID~rI~~LE~~Iq----------hgSLsL~EEKklLkEIsqL~k 212 (520)
..+++.||.-...++..+. .+.++-.+|--+..|...|..
T Consensus 126 ~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~ 175 (191)
T PTZ00446 126 EINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE 175 (191)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 4478888877666655432 222233566777777766654
No 280
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.40 E-value=2.8e+02 Score=26.83 Aligned_cols=93 Identities=11% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMAN---AAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE 277 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a~---~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~ 277 (520)
|++-.+|+.-++.|+.--.. ..+ ..+-.-+.+......+...+..+...++.++..++.+++.|..++..+..++.
T Consensus 57 kqY~~~i~~AKkqRk~~~~~~~~ltl-~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 57 KQYEEAIELAKKQRKELKREAGSLTL-QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCH-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899888888752110 000 00000000111111112222233444555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010022 278 ALQQEVNDVAEKRDKAF 294 (520)
Q Consensus 278 ~LqeEl~al~~krdeay 294 (520)
.++++..++....+.+.
T Consensus 136 ~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 136 TIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555543
No 281
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=46.40 E-value=1.1e+02 Score=30.84 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 266 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 266 ~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LR 301 (520)
++++..-+.++..|.+=+..++.+||+|..+++.|.
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666667777777777777666665
No 282
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.98 E-value=1.2e+02 Score=29.18 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQE 282 (520)
Q Consensus 250 eLKkeldalr~kIkel~~k~~al~~ei~~LqeE 282 (520)
....++..++.+|+..+..+++++++...++++
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444443
No 283
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=45.33 E-value=1.5e+02 Score=32.51 Aligned_cols=24 Identities=13% Similarity=0.309 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEE 275 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~e 275 (520)
+.+++.+...+..+...+..++..
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 284
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=45.31 E-value=2.5e+02 Score=25.81 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDV 330 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v 330 (520)
+...+..+......+-...-.+..++..+..++...+.....+......+..+++.++..| .--..+...+ ..+
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-s~~~l~~~L~-----~~~ 105 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-SPDALLARLQ-----AAA 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHH-----HHH
Confidence 3444444444444444444444444555555555444444444444444444444443221 1112222222 234
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhh
Q 010022 331 QGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMR 369 (520)
Q Consensus 331 ~el~~~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R 369 (520)
.++++.|..=++.|+.-=..-+.|=+.|...-...-.||
T Consensus 106 ~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~ 144 (150)
T PF07200_consen 106 SEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 566677777777887544445677777776443333333
No 285
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=45.26 E-value=2.4e+02 Score=26.74 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=6.1
Q ss_pred hccCCCCCCCCCC
Q 010022 371 LSRDGRIRNPDEK 383 (520)
Q Consensus 371 ~~~DGR~~~pde~ 383 (520)
++-|| ..|-||+
T Consensus 113 l~~dg-~~Gldeq 124 (155)
T PF06810_consen 113 LDDDG-LKGLDEQ 124 (155)
T ss_pred eCCCc-cccHHHH
Confidence 34445 5555554
No 286
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=44.90 E-value=1.7e+02 Score=27.39 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHH
Q 010022 94 KIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (520)
Q Consensus 94 kI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lq 155 (520)
.|+.+=..|+++.++.-...+.+...+.-...|..+|++|..+.-.+...++.|..-+.-|+
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLq 68 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQ 68 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 287
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=44.84 E-value=3.1e+02 Score=29.82 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010022 293 AFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 293 ay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
+..++..|....+... .|......+..+.+++....-.++.+++..|+..+....
T Consensus 54 l~ke~~~L~~iv~~~~-~l~~~~~e~~~~~ell~~e~D~el~~~a~~e~~~l~~~l 108 (367)
T PRK00578 54 VTKELSSLKAKLDTLE-ELRQRLDDLEELLELAEEEDDEETLAEAEAELKALEKKL 108 (367)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444333322 244555556666666644333567777777776665544
No 288
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.92 E-value=90 Score=27.28 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGT 213 (520)
Q Consensus 201 KklLkEIsqL~k~ 213 (520)
+.++.||..|...
T Consensus 33 ~~v~~EL~~l~~d 45 (105)
T cd00632 33 KKALEELEKLADD 45 (105)
T ss_pred HHHHHHHHcCCCc
Confidence 5566677766533
No 289
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=43.86 E-value=4e+02 Score=27.85 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
|...+.++..+...++..++.+..++..+......+-.+..++-.+...+..++.+.+
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555666666666666666666666666666666666665555443
No 290
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.84 E-value=2.6e+02 Score=29.51 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=40.6
Q ss_pred eccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh-------HHhHHHHHHHHHhhHH
Q 010022 81 IRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG-------RQYKSVMDDKRKEMEP 153 (520)
Q Consensus 81 vKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~-------k~~r~~~~~K~kEi~~ 153 (520)
||+|.| +.+-.=+++-+.-|..|+.+.-+-.+.|.-.-.+..+|..||--.++.- =...=++++-++||++
T Consensus 51 ikPP~P--EQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQ 128 (305)
T PF15290_consen 51 IKPPNP--EQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQ 128 (305)
T ss_pred CCCCCH--HHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 564444 5555556666665665543332222333333344444444443332210 1223456677788888
Q ss_pred HHHHHhhhh
Q 010022 154 LHQALGKLR 162 (520)
Q Consensus 154 Lqe~L~klr 162 (520)
|++.+.-+|
T Consensus 129 LkQvieTmr 137 (305)
T PF15290_consen 129 LKQVIETMR 137 (305)
T ss_pred HHHHHHHHH
Confidence 888887665
No 291
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=43.37 E-value=3.5e+02 Score=26.99 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 010022 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILRE 206 (520)
Q Consensus 172 ~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkE 206 (520)
.-.|.++|..+|......+..-.-.|.+....|..
T Consensus 76 ~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~ 110 (240)
T PF12795_consen 76 ANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIE 110 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888887777665544444444333333
No 292
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=43.34 E-value=3.7e+02 Score=27.32 Aligned_cols=163 Identities=15% Similarity=0.202 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHhhccchhhHHHH
Q 010022 178 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKED---IQDQVKLMGSDLDGVKKE 254 (520)
Q Consensus 178 EID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~---iqeqiK~l~~eIdeLKke 254 (520)
+-...|..||.++ |++.+-+..|-+.|..+..+.+.++..-..++.-+. +...+- .+.++...
T Consensus 26 ~k~~~ie~LE~qL----------k~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als----~laev~~~ 91 (234)
T cd07665 26 EKLQEVECEEQRL----------RKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALS----QLAEVEEK 91 (234)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH----HHHHHHHH
Confidence 3444566777766 678889999999999988888888776666665442 111111 12233333
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHH
Q 010022 255 SQAVWAKIS-HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA------------YFFQYRALLNEA 321 (520)
Q Consensus 255 ldalr~kIk-el~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~------------~f~~~r~~~~ka 321 (520)
+..+..... ...-.+...=++|-.+-.-++.+...|..+|..+..+......+.. .+.+....+..+
T Consensus 92 i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~ 171 (234)
T cd07665 92 IEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEW 171 (234)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 333322211 1111223334466667777778888888888887766554443332 233333333333
Q ss_pred HHHh--hccCHHHHHHHHHHHHHHHHHHHhCChHhHH
Q 010022 322 KAMS--VKKDVQGLKELSNSEVEKYMTLWNNNKAFRD 356 (520)
Q Consensus 322 rela--~~~~v~el~~~~~~eve~fm~~wn~d~~FR~ 356 (520)
..-+ ++.+...+-..+..||++|-.- .-.+||.
T Consensus 172 e~k~~~a~~~fe~is~~ik~El~rFe~e--r~~Dfk~ 206 (234)
T cd07665 172 ESRVTQYERDFERISATVRKEVIRFEKE--KSKDFKN 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 2222 3457888889999999999764 3345665
No 293
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=43.24 E-value=3.6e+02 Score=27.08 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhc
Q 010022 179 LDDLIRSLQYRIQH 192 (520)
Q Consensus 179 ID~rI~~LE~~Iqh 192 (520)
|...|..|+..|+.
T Consensus 39 i~e~i~~Le~~l~~ 52 (247)
T PF06705_consen 39 IKEQIQKLEKALEA 52 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 294
>PF14282 FlxA: FlxA-like protein
Probab=42.95 E-value=1.6e+02 Score=26.09 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHhHHhHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMD----ELRAKRGVRGDLAAQLRSLKTEGRQYKSV 143 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a----~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~ 143 (520)
....|..|.+.|..|.+....|.. .-+.+...+..|..+|..|.++...+...
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777776665 22456788888888888888887665543
No 295
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.43 E-value=3.5e+02 Score=26.75 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC
Q 010022 173 CSSEEELDDLIRSLQYRIQHEI 194 (520)
Q Consensus 173 fkSveEID~rI~~LE~~IqhgS 194 (520)
+.+-+.|..+|..+|...+...
T Consensus 165 ~~~fer~e~ki~~~ea~aea~~ 186 (219)
T TIGR02977 165 MARFEQYERRVDELEAQAESYD 186 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777777777665543
No 296
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.40 E-value=2.3e+02 Score=24.67 Aligned_cols=7 Identities=14% Similarity=0.387 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010022 210 LEGTREK 216 (520)
Q Consensus 210 L~k~Rk~ 216 (520)
++..+.+
T Consensus 8 ~q~l~~~ 14 (105)
T cd00632 8 LQQLQQQ 14 (105)
T ss_pred HHHHHHH
Confidence 3333333
No 297
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.95 E-value=7e+02 Score=30.11 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=56.9
Q ss_pred cCCCCccccceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHH
Q 010022 68 EWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLM------------------------------DELR 117 (520)
Q Consensus 68 ~~~~~~~~~~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~------------------------------a~i~ 117 (520)
+.-..++.+...|.-+|-+-..+-...++.+..+-+.+.+.-..+. +.|.
T Consensus 760 Vqi~dRq~RYSrfPeiPLFGrAAREqrLE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqFvg~HLavAF~~dPE~~~~ 839 (1480)
T COG3096 760 VKIADRQWRYSRFPEIPLFGRAAREQRLESLHAERDVLSERHATLSFDVQKTQRLHQAFSRFIGSHLAVAFEADPEAEIR 839 (1480)
T ss_pred EEechhhhhhhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3445566666677788888887777777766665554443322221 2334
Q ss_pred HHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHH
Q 010022 118 AKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 118 ~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L 158 (520)
.++.+|++|-..|.....+..+.|..++.-.+-+..|...+
T Consensus 840 ~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLi 880 (1480)
T COG3096 840 QLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLI 880 (1480)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888888888777777777776666555555554433
No 298
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.44 E-value=1.3e+02 Score=30.81 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
|.-|..++|=.|.+..+|++++......+..|+.+++.+.+.=-++|++++=|..
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4557889999999999999999888889999998888888877777777765543
No 299
>PLN02320 seryl-tRNA synthetase
Probab=41.36 E-value=1.5e+02 Score=33.42 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 010022 101 EIQRRNQARMQLMDELRAKRGVRGDLAAQLRS 132 (520)
Q Consensus 101 eI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~ 132 (520)
+|-.+.+.+..+..+++.++.+|+.+..++..
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666666667777777666666643
No 300
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.11 E-value=2.1e+02 Score=32.18 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 270 KALDEEIEALQQEVNDVAEKRDKAF 294 (520)
Q Consensus 270 ~al~~ei~~LqeEl~al~~krdeay 294 (520)
+.+.++-..|+.....+..+++.+.
T Consensus 83 ~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 83 EALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3333334444444444444444444
No 301
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.91 E-value=3.4e+02 Score=27.33 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
+..|+.++..+......+-..+..|+.++-...++|-+||+...+-++
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e 103 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKE 103 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555666666666777777776665444
No 302
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.89 E-value=2.2e+02 Score=24.05 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 308 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerde~n 308 (520)
+..|.+....+...++.+-..+..|.++..+..
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 303
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=40.71 E-value=3.2e+02 Score=25.82 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010022 199 EEKQILREIKQLEGTREKVMA 219 (520)
Q Consensus 199 EEKklLkEIsqL~k~Rk~v~a 219 (520)
|||+-.+|+..|......+..
T Consensus 31 E~KRgdRE~~~L~~~~~~~~e 51 (145)
T PF14942_consen 31 EEKRGDREVRVLENLTEMISE 51 (145)
T ss_pred HHccCcHHHHHHHHHHHHHHH
Confidence 568888888888888876533
No 304
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=40.48 E-value=2.1e+02 Score=31.44 Aligned_cols=76 Identities=18% Similarity=0.393 Sum_probs=50.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHH
Q 010022 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGV------RGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 85 ~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~------R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L 158 (520)
-++.+.+..++..+..++..++.....|...+...... ..+....++.+......+...+.....++..|++.+
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45558899999999999998888888887777665432 234445555555555555555555555666666555
Q ss_pred hh
Q 010022 159 GK 160 (520)
Q Consensus 159 ~k 160 (520)
..
T Consensus 406 ~~ 407 (451)
T PF03961_consen 406 ER 407 (451)
T ss_pred Hh
Confidence 43
No 305
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=40.15 E-value=4.6e+02 Score=27.48 Aligned_cols=34 Identities=12% Similarity=0.328 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 010022 279 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 279 LqeEl~al~~krdeay~~i~~LRkerde~n~~f~ 312 (520)
...++..+......+|....+|+....++.+.|-
T Consensus 289 ~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~ 322 (342)
T cd08915 289 SLDPREEALQDLEASYKKYLELKENLNEGSKFYN 322 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444555556666666666666666666665333
No 306
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=40.07 E-value=4.6e+02 Score=27.47 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRN 106 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~ 106 (520)
..+...+..++.++..+.
T Consensus 84 ~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 84 AELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666766666665543
No 307
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=39.61 E-value=1.6e+02 Score=25.48 Aligned_cols=44 Identities=27% Similarity=0.170 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHH
Q 010022 101 EIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVM 144 (520)
Q Consensus 101 eI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~ 144 (520)
++..++...++|...|+.+-.+-..|..+|..|.+-.++.|..+
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555567777777888888888888888877766665544
No 308
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=39.18 E-value=5.1e+02 Score=27.74 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=11.7
Q ss_pred hccCHHHHHHHHHHHHH
Q 010022 326 VKKDVQGLKELSNSEVE 342 (520)
Q Consensus 326 ~~~~v~el~~~~~~eve 342 (520)
-.|++.+.+.+......
T Consensus 195 I~G~~~~A~~~~~~~~~ 211 (355)
T PF09766_consen 195 IVGDEEEAKAFERQQEN 211 (355)
T ss_pred EEecHHHHHHHHhcccc
Confidence 34888888887766543
No 309
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=38.81 E-value=2.3e+02 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCChHHHHHHHHHH
Q 010022 175 SEEELDDLIRSL-QYRIQHEIIPLSEEKQILREI 207 (520)
Q Consensus 175 SveEID~rI~~L-E~~IqhgSLsL~EEKklLkEI 207 (520)
+..++-.+...| +..+.-|-|+..|=|+++.++
T Consensus 18 ~~a~~~ek~~klvDelVkkGeln~eEak~~vddl 51 (108)
T COG3937 18 LAAETAEKVQKLVDELVKKGELNAEEAKRFVDDL 51 (108)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 444555555444 455788999999999999986
No 310
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=38.79 E-value=4.9e+02 Score=27.55 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=5.1
Q ss_pred CCCCCCC
Q 010022 375 GRIRNPD 381 (520)
Q Consensus 375 GR~~~pd 381 (520)
|-+++||
T Consensus 174 GlVlv~~ 180 (302)
T PF09738_consen 174 GLVLVPD 180 (302)
T ss_pred CeeeCCC
Confidence 6677777
No 311
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.65 E-value=7e+02 Score=29.10 Aligned_cols=26 Identities=12% Similarity=-0.075 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDEL 116 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i 116 (520)
+..+.+.+..-+.=+......+...+
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l 210 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQS 210 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333333333333333
No 312
>PF15456 Uds1: Up-regulated During Septation
Probab=38.58 E-value=3.2e+02 Score=25.17 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=38.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV-----------AEKRDKAFANIKELRKQRDEGNAYFFQYR 315 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al-----------~~krdeay~~i~~LRkerde~n~~f~~~r 315 (520)
++++||+++..+...+..+..++. +...+...-..+..+ ..-....-+.+..+-...|+...++|+..
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le 101 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLE 101 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455666666666666555555544 333222222222222 12233444555566666666666666666
Q ss_pred HHHHHHHH
Q 010022 316 ALLNEAKA 323 (520)
Q Consensus 316 ~~~~kare 323 (520)
+.+...+.
T Consensus 102 ~R~~~~~~ 109 (124)
T PF15456_consen 102 NRLAEVRQ 109 (124)
T ss_pred HHHHHHHH
Confidence 55555443
No 313
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=38.47 E-value=3.4e+02 Score=28.73 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~ka 321 (520)
|+.++.++..+.+...=....|+++-..|.=+++-|+++..+.-+.+-.|+.++.++..+|-..++.....
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L 152 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333334566666777777777777777777777777777766666655555554443
No 314
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=38.35 E-value=5.1e+02 Score=27.41 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVM 218 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~ 218 (520)
+.+|.++..|+..|..+.
T Consensus 194 r~~l~~l~~lk~eR~~~~ 211 (339)
T cd09235 194 RQLMEQVETIKAEREVIE 211 (339)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777877777753
No 315
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=37.93 E-value=1.4e+02 Score=34.31 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHH-------HHhhhhhhhcc
Q 010022 102 IQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ-------ALGKLRTTNNA 167 (520)
Q Consensus 102 I~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe-------~L~klre~nnA 167 (520)
|.++...+.-+..++..+..+|++|+++|..+..++..++..+..++.++..|+- .+.+++++|+-
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~p 153 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNP 153 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 4455555667777888888999999999999999988888888777776666654 34456665553
No 316
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.90 E-value=5.2e+02 Score=27.38 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhc---cCHHHHHHHHH--HHHHHHHH
Q 010022 299 ELRKQRDEGNAYFFQYRALLNEAKAMSVK---KDVQGLKELSN--SEVEKYMT 346 (520)
Q Consensus 299 ~LRkerde~n~~f~~~r~~~~karela~~---~~v~el~~~~~--~eve~fm~ 346 (520)
.+.....+....+-.-...+.+|.+-... +++.||+.|.+ .=|...|+
T Consensus 72 ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~ 124 (344)
T PF12777_consen 72 EIEEIKEEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVME 124 (344)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHH
Confidence 33333445556666667777777766655 46666666553 23444444
No 317
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=37.80 E-value=1.9e+02 Score=30.22 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhH
Q 010022 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA----NIKELRKQRDEGNA 309 (520)
Q Consensus 250 eLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~----~i~~LRkerde~n~ 309 (520)
.+-..++.++. .+...+...-.+++.|-.++..|+.++-.+.. .-+.|+++||.+-.
T Consensus 145 ~~~~~L~~~~~---~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~ 205 (322)
T TIGR02492 145 QTSNELQDLRK---GINAEIKSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLK 205 (322)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHH
Confidence 34444444443 23344444455666677777777777665443 34678888887554
No 318
>PRK10698 phage shock protein PspA; Provisional
Probab=37.78 E-value=4.3e+02 Score=26.43 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010022 198 SEEKQILREIKQLEGTREK 216 (520)
Q Consensus 198 ~EEKklLkEIsqL~k~Rk~ 216 (520)
..+|++=+++.++...-.+
T Consensus 52 A~~k~~er~~~~~~~~~~~ 70 (222)
T PRK10698 52 AEKKQLTRRIEQAEAQQVE 70 (222)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554333
No 319
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.71 E-value=6.2e+02 Score=28.90 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 275 EIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 275 ei~~LqeEl~al~~krdeay~~i~~LR 301 (520)
+++.+-+.+-.++++.-.--+.|+.|+
T Consensus 488 QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 488 QLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555445554444
No 320
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=37.59 E-value=5.3e+02 Score=27.43 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHH
Q 010022 180 DDLIRSLQYRIQHEIIPLSEEKQIL-----REIKQLEGTREKVMA-NAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKK 253 (520)
Q Consensus 180 D~rI~~LE~~IqhgSLsL~EEKklL-----kEIsqL~k~Rk~v~a-~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKk 253 (520)
...+..|+..+.|..-.|.| |-++ ++.++-....+.+.. |-...+++...++..+++++++-.+-.+=-=|+.
T Consensus 157 esK~nsLe~elh~trdaLrE-KtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQ 235 (305)
T PF14915_consen 157 ESKFNSLEIELHHTRDALRE-KTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQ 235 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477777777776666654 3332 233333333333222 2233567777777777777776654333334555
Q ss_pred HHHHHHHH
Q 010022 254 ESQAVWAK 261 (520)
Q Consensus 254 eldalr~k 261 (520)
++++..++
T Consensus 236 QLddA~~K 243 (305)
T PF14915_consen 236 QLDDAHNK 243 (305)
T ss_pred HHHHHHHH
Confidence 55555544
No 321
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=37.55 E-value=1.2e+02 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=27.8
Q ss_pred ccceeeec--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 75 IHNFYFIR--HRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGV 122 (520)
Q Consensus 75 ~~~~yfvK--vp~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~ 122 (520)
++...|-. .|+++-+.....+..|+.+|+.+...+..+.+.+...+.+
T Consensus 50 i~~v~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 50 ILSVRFRRDFLPEPEKESDSPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred EEEEEEEEeccCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 3333445556677777777777776666666665555443
No 322
>PRK02119 hypothetical protein; Provisional
Probab=37.54 E-value=2.4e+02 Score=23.50 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~ 298 (520)
-..+..|..++.-..+.++.+++-+-..+.+++.+...-..++..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555444444444444444444444333
No 323
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.48 E-value=2.7e+02 Score=31.12 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=5.0
Q ss_pred HHhCChHhHHHH
Q 010022 347 LWNNNKAFRDDY 358 (520)
Q Consensus 347 ~wn~d~~FR~dY 358 (520)
+.-.+-.|+-.|
T Consensus 200 Y~v~~a~W~P~Y 211 (525)
T TIGR02231 200 YQVGNASWTPSY 211 (525)
T ss_pred EEeCCCcEeeee
Confidence 333344444444
No 324
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.45 E-value=3.3e+02 Score=28.85 Aligned_cols=26 Identities=12% Similarity=0.468 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDEL 116 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i 116 (520)
++.++...+.++...+..-..+...|
T Consensus 20 m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 20 MQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333444333
No 325
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.39 E-value=2.3e+02 Score=23.13 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEV 283 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl 283 (520)
+...-....+|++...+...+..+|..|..++
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444333
No 326
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.33 E-value=1.6e+02 Score=32.65 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 278 ALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 278 ~LqeEl~al~~krdeay~~i~~LRker 304 (520)
.|..+...+..+...+-..+.++..+.
T Consensus 72 ~l~~e~~~l~~~l~~~e~~~~~~~~~l 98 (429)
T COG0172 72 ELIAEVKELKEKLKELEAALDELEAEL 98 (429)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444444444444444443343333
No 327
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=37.27 E-value=1e+02 Score=32.41 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 285 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~a 285 (520)
|+..+...+++|..|+.++++++.++..++++.+.
T Consensus 143 Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~ 177 (308)
T PF06717_consen 143 IEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDR 177 (308)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444443
No 328
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=37.02 E-value=6.1e+02 Score=28.01 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 95 IDLTDREIQRRNQARMQLMDELRAKRG 121 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~a~i~~~R~ 121 (520)
++.+-.+++..++--..|-+.+..++.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke 288 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKE 288 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555543
No 329
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.96 E-value=76 Score=35.51 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 259 WAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 259 r~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
..+.++|++++++++.++..+...+.....+++++-..+..|+.+.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444454444
No 330
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=36.76 E-value=5.2e+02 Score=29.80 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=61.4
Q ss_pred hhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q 010022 232 GKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF----------ANIKELR 301 (520)
Q Consensus 232 ~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay----------~~i~~LR 301 (520)
.+...+..+++.+...++.+..-.+.+...+.........+-.+...|+.+.+.+..+++-+- .+...|+
T Consensus 38 ~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~ 117 (618)
T PF06419_consen 38 KEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDALT 117 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence 344455556666666677777777777777777777777777777788777777776665543 2345666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHH
Q 010022 302 KQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 302 kerde~n~~f~~~r~~~~kare 323 (520)
......+..||.--....+.++
T Consensus 118 ~~~~~v~~~FF~~L~r~~~I~~ 139 (618)
T PF06419_consen 118 SGEEPVDDEFFDALDRVQKIHE 139 (618)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
Confidence 6555778888877666555543
No 331
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.75 E-value=2.4e+02 Score=25.32 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010022 293 AFANIKELR 301 (520)
Q Consensus 293 ay~~i~~LR 301 (520)
.|.++..|+
T Consensus 74 g~~NL~~LY 82 (107)
T PF06156_consen 74 GRDNLARLY 82 (107)
T ss_pred hHHHHHHHH
Confidence 333333333
No 332
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=36.67 E-value=4.4e+02 Score=26.25 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcCCC
Q 010022 179 LDDLIRSLQYRIQHEII 195 (520)
Q Consensus 179 ID~rI~~LE~~IqhgSL 195 (520)
+...|..|+.+.+.+..
T Consensus 173 lQ~qv~~Lq~q~~~~~~ 189 (192)
T PF11180_consen 173 LQRQVRQLQRQANEPIP 189 (192)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 44445555555544443
No 333
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=36.36 E-value=3.4e+02 Score=24.86 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCChHHH-HHHHHHHHHHHHHHHHHHHH
Q 010022 183 IRSLQYRIQHEIIPLSEE-KQILREIKQLEGTREKVMAN 220 (520)
Q Consensus 183 I~~LE~~IqhgSLsL~EE-KklLkEIsqL~k~Rk~v~a~ 220 (520)
|+-|+-.+...|..|.+| +.++..|..+++.=..+...
T Consensus 11 iRVldp~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~ 49 (120)
T PF14931_consen 11 IRVLDPEKADQTQELKEECKEFVEKISEFQKIVKGFIEI 49 (120)
T ss_pred eeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555566655 78899999998886655443
No 334
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.02 E-value=5.8e+02 Score=29.93 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=39.5
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHH
Q 010022 237 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA---NIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 237 iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~---~i~~LRkerde~n~~f~~ 313 (520)
+..+-..+-..+..+-..++.++. .+..++...-.+++.|-+++..|+.++-.+.. .-+.|+++||.+-.++-+
T Consensus 132 vl~~A~~La~~fn~~~~~L~~l~~---~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~ 208 (676)
T PRK05683 132 LLTQAQGLSKRFNSLSSQLNQQNS---NINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNE 208 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHh
Confidence 333333333334444555555443 33444455555666666666666666654422 235677777776665544
Q ss_pred H
Q 010022 314 Y 314 (520)
Q Consensus 314 ~ 314 (520)
+
T Consensus 209 ~ 209 (676)
T PRK05683 209 L 209 (676)
T ss_pred h
Confidence 4
No 335
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=36.01 E-value=6.9e+02 Score=28.28 Aligned_cols=163 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHH
Q 010022 102 IQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDD 181 (520)
Q Consensus 102 I~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~ 181 (520)
|++|+.....+++.-=...-+++++...|+.|..-.......+.+.+.+-+.|+-.+++++.-
T Consensus 364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~n----------------- 426 (527)
T PF15066_consen 364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKAN----------------- 426 (527)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh-----------------
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHH
Q 010022 182 LIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAK 261 (520)
Q Consensus 182 rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~k 261 (520)
--.|+. +++.||++=.+. |.-+.+| ..++.+++.-.+++..++.++. .+..+-
T Consensus 427 -yv~LQE-------------ry~~eiQqKnks---vsqclEm----dk~LskKeeeverLQ~lkgelE------kat~SA 479 (527)
T PF15066_consen 427 -YVHLQE-------------RYMTEIQQKNKS---VSQCLEM----DKTLSKKEEEVERLQQLKGELE------KATTSA 479 (527)
T ss_pred -HHHHHH-------------HHHHHHHHhhhH---HHHHHHH----HHHhhhhHHHHHHHHHHHHHHH------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 010022 262 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 262 Ikel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f 311 (520)
|.-|...-+....++-+||++++.-.++. .+++..|+..+.++-...
T Consensus 480 LdlLkrEKe~~EqefLslqeEfQk~eken---l~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 480 LDLLKREKETREQEFLSLQEEFQKHEKEN---LEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhc
No 336
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.96 E-value=8.1e+02 Score=29.11 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhc--cCHHHHHHH----H--HHHHHHHHHHHhCChHhHH--HHHHHh
Q 010022 310 YFFQYRALLNEAKAMSVK--KDVQGLKEL----S--NSEVEKYMTLWNNNKAFRD--DYEKRL 362 (520)
Q Consensus 310 ~f~~~r~~~~karela~~--~~v~el~~~----~--~~eve~fm~~wn~d~~FR~--dY~k~~ 362 (520)
.+-.....++.+..+|.. |.....|.. . -+++-|.+-+-|+.--=|- ||++..
T Consensus 420 ri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~ 482 (717)
T PF09730_consen 420 RISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQG 482 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhh
Confidence 344444455555554444 223333322 2 2456677777777776673 777743
No 337
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.89 E-value=8e+02 Score=29.21 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=11.3
Q ss_pred HhHHHHhhhhhccCCCCCC
Q 010022 361 RLLQSLDMRQLSRDGRIRN 379 (520)
Q Consensus 361 ~~~~s~~~R~~~~DGR~~~ 379 (520)
..|++.++..|..+-+...
T Consensus 734 G~Lr~~v~~~L~~~~~V~~ 752 (771)
T TIGR01069 734 GKLRKGVQELLKNHPKVKS 752 (771)
T ss_pred hHHHHHHHHHhcCCcceee
Confidence 4567777777766544433
No 338
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=35.78 E-value=5.5e+02 Score=27.08 Aligned_cols=68 Identities=7% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 253 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 253 keldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
...+.+-..|..+...|............++..+...-..+|....+|....+++.+.|-.....+..
T Consensus 258 ~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~v~~ 325 (337)
T cd09234 258 AAQENILKALTEANAKYAPVRKALSETKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLEGNVSK 325 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555566677777777788888888888888888887755444443333
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=35.63 E-value=1.4e+02 Score=34.19 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
+..|..++.++....+.+|..+-+|-.+..
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555554433
No 340
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=35.62 E-value=4.5e+02 Score=26.06 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHhhccchhhHHHHH
Q 010022 179 LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKED---IQDQVKLMGSDLDGVKKES 255 (520)
Q Consensus 179 ID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~---iqeqiK~l~~eIdeLKkel 255 (520)
....|..||.++ |++.+-+..|-+.|+.+....+.++.--..++.-+. +...+.. +.++-..+
T Consensus 17 ~k~~i~~Le~~L----------k~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~----la~~~~ki 82 (224)
T cd07623 17 KQQQIENLDQQL----------RKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQ----LAEVEEKI 82 (224)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH----HHHHHHHH
Confidence 344455555554 566677778888888877777666665555554331 1111111 11222222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHH
Q 010022 256 QAVWAK-ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY------------FFQYRALLNEAK 322 (520)
Q Consensus 256 dalr~k-Ikel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~------------f~~~r~~~~kar 322 (520)
..+... -..--..+...=.+|-.+-.-...+...|..++..+..+......+... +.+....+..+.
T Consensus 83 ~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e 162 (224)
T cd07623 83 EQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWE 162 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 222211 0011111222223445555556666666666665555444443333332 344444444443
Q ss_pred HHh--hccCHHHHHHHHHHHHHHHHHHHhCChHhHH
Q 010022 323 AMS--VKKDVQGLKELSNSEVEKYMTLWNNNKAFRD 356 (520)
Q Consensus 323 ela--~~~~v~el~~~~~~eve~fm~~wn~d~~FR~ 356 (520)
.-+ +..+...+-..+..|+.+|-.-.. .+||.
T Consensus 163 ~~~~~a~~~fe~is~~~k~El~rF~~erv--~dfk~ 196 (224)
T cd07623 163 AKVDRGQKEFEEISKTIKKEIERFEKNRV--KDFKD 196 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 332 345888899999999999976543 34554
No 341
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=35.34 E-value=38 Score=25.54 Aligned_cols=44 Identities=5% Similarity=0.031 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCCCC
Q 010022 338 NSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPD 381 (520)
Q Consensus 338 ~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R~~~~DGR~~~pd 381 (520)
..+++.|+..-.+|.+||..+..|-...-...+....|-.-.++
T Consensus 3 ~~~l~~Fl~~~~~d~~l~~~l~~~~~~~e~~~lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 3 IESLKAFLEKVKSDPELREQLKACQNPEEVVALAREAGYDFTEE 46 (49)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHcCCCCCHH
Confidence 46799999999999999999999877766667777777655443
No 342
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=35.22 E-value=5.9e+02 Score=27.31 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=5.3
Q ss_pred CchHHHHHHH
Q 010022 87 DDPKIRAKID 96 (520)
Q Consensus 87 Dd~~lkakI~ 96 (520)
.||..-+.|.
T Consensus 141 ~dp~~A~~i~ 150 (444)
T TIGR03017 141 VDPRFAATVA 150 (444)
T ss_pred CCHHHHHHHH
Confidence 4455555554
No 343
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.18 E-value=2.6e+02 Score=23.14 Aligned_cols=25 Identities=16% Similarity=0.237 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 010022 105 RNQARMQLMDELRAKRGVRGDLAAQ 129 (520)
Q Consensus 105 l~q~R~~I~a~i~~~R~~R~eL~~q 129 (520)
+...|..++++...+|.+-..++++
T Consensus 33 ~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 33 WREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 344
>PRK04406 hypothetical protein; Provisional
Probab=35.10 E-value=2.7e+02 Score=23.38 Aligned_cols=45 Identities=7% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 253 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 253 keldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i 297 (520)
..+..|..+|.-..+-++.+++.+-..+.+++.+......++..+
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333333
No 345
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=34.98 E-value=4.6e+02 Score=27.75 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=39.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhh
Q 010022 117 RAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 117 ~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~kl 161 (520)
+++|+++..+..++..|...+..+|....+.-+||.-|++.|-.+
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999887644
No 346
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.96 E-value=5.9e+02 Score=27.19 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG 137 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~ 137 (520)
+.+...|..++.+-. .+...+...+.+...|...++.|+...
T Consensus 23 ~~l~~~~~sL~qen~-------~Lk~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 23 EQLRKRIESLQQENR-------VLKRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666433 455677788899999999999887764
No 347
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=34.64 E-value=30 Score=39.58 Aligned_cols=22 Identities=9% Similarity=-0.109 Sum_probs=10.0
Q ss_pred HHhhhhhccCCCCCCCCCCccc
Q 010022 365 SLDMRQLSRDGRIRNPDEKPLV 386 (520)
Q Consensus 365 s~~~R~~~~DGR~~~pde~p~~ 386 (520)
+.....-..-|+.-=-|..|++
T Consensus 402 ~~l~~wE~e~g~pFlv~G~~~l 423 (619)
T PF03999_consen 402 KKLEEWEEEHGKPFLVDGERYL 423 (619)
T ss_dssp HHHHHHHHHHTS--EETTEEHH
T ss_pred HHHHHHHHHcCCeEEEcCccHH
Confidence 3333444455665555666554
No 348
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=34.53 E-value=9.3e+02 Score=29.38 Aligned_cols=98 Identities=14% Similarity=0.265 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 010022 202 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVK-------ALDE 274 (520)
Q Consensus 202 klLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~-------al~~ 274 (520)
++=.|..+|...|.+...-- ..+.+.....-+.++++..++..+..++.+..++-.+.+.+..++. .+..
T Consensus 390 qLr~elaql~a~r~q~eka~---~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~ 466 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQ---VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE 466 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66667777777777643311 1123333333444556666666666666666666555555544443 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 275 EIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 275 ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
+...|.+.+.++....+.+-.+-..+.+
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~ 494 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAK 494 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4445555555555555553333333333
No 349
>PHA01750 hypothetical protein
Probab=34.51 E-value=94 Score=25.93 Aligned_cols=27 Identities=19% Similarity=0.525 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
++.|..++.+++-++|.+-..+.+|+.
T Consensus 44 LdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 44 LDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 350
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.29 E-value=2.9e+02 Score=23.51 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK 328 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~ 328 (520)
..|...++.++.++..+...+..+...+..+......+...+...| ..|+.-.++....+...-......+...-..
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f---~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~ 79 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAF---DELRNALNKRKKQLLEDLEEQKENKLKVLEQ 79 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHH
Q 010022 329 DVQGLKELSNS 339 (520)
Q Consensus 329 ~v~el~~~~~~ 339 (520)
....++..+..
T Consensus 80 q~~~l~~~l~~ 90 (127)
T smart00502 80 QLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHH
No 351
>PRK09239 chorismate mutase; Provisional
Probab=34.27 E-value=3.3e+02 Score=24.13 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 268 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 268 k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
.+..+..+|+.|..++-.+.++|-.+-..+..++...
T Consensus 11 ~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~~ 47 (104)
T PRK09239 11 ELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAEH 47 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455555677777777777777888777777777654
No 352
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=34.19 E-value=3.1e+02 Score=23.78 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010022 272 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 322 (520)
Q Consensus 272 l~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kar 322 (520)
+...+..|..+......+.=.+-...+.|..+...++.-+-.+...+....
T Consensus 29 lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 29 LEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333333333333333333333333444444444433333333333333
No 353
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=34.19 E-value=2.2e+02 Score=30.22 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010022 250 GVKKESQAVWAKISHLEG 267 (520)
Q Consensus 250 eLKkeldalr~kIkel~~ 267 (520)
+|+.+++.+..++..+.+
T Consensus 3 el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344444444444444443
No 354
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=34.13 E-value=2.5e+02 Score=24.39 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
.|...+++|+.-++.|.+..+.|..+..++...-+..|.++.
T Consensus 30 ~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 30 AINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555443
No 355
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=34.10 E-value=66 Score=23.06 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010022 198 SEEKQILREIKQLEGTREKV 217 (520)
Q Consensus 198 ~EEKklLkEIsqL~k~Rk~v 217 (520)
.||.+++.|..+|++.|+++
T Consensus 1 adEqkL~sekeqLrrr~eqL 20 (32)
T PF02344_consen 1 ADEQKLISEKEQLRRRREQL 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 48999999999999999975
No 356
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.82 E-value=1.7e+02 Score=32.86 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 262 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 262 Ikel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
+.+-..+..++.++|..|+.++..+...++..-.+|++|..+...
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~ 115 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAA 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555554444444444443
No 357
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=33.77 E-value=39 Score=39.32 Aligned_cols=21 Identities=10% Similarity=0.316 Sum_probs=10.3
Q ss_pred HHHHHHHHHhC-ChHhHHHHHH
Q 010022 340 EVEKYMTLWNN-NKAFRDDYEK 360 (520)
Q Consensus 340 eve~fm~~wn~-d~~FR~dY~k 360 (520)
-..|.++.|+. ..+||+=.+.
T Consensus 621 r~~RLkevf~~ks~eFr~av~~ 642 (722)
T PF05557_consen 621 RNQRLKEVFKAKSQEFREAVYS 642 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555642 3456654444
No 358
>PF14282 FlxA: FlxA-like protein
Probab=33.67 E-value=2.2e+02 Score=25.19 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEG 267 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~ 267 (520)
|..|++++..|..+|+.|.+
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33455555555555555544
No 359
>PRK15396 murein lipoprotein; Provisional
Probab=33.64 E-value=2e+02 Score=24.59 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krde 292 (520)
++.|..+++.+..++..+.....+++..+..-++|-.-++..+|-
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455544555555555555555555555543
No 360
>PF15294 Leu_zip: Leucine zipper
Probab=33.54 E-value=5.9e+02 Score=26.77 Aligned_cols=149 Identities=17% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCC------------ChHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHHHHH
Q 010022 178 ELDDLIRSLQYRIQHEII------------PLSEEKQ---ILREIKQLEGTREKVMA-NAAMRAKIQESMGKKEDIQDQV 241 (520)
Q Consensus 178 EID~rI~~LE~~IqhgSL------------sL~EEKk---lLkEIsqL~k~Rk~v~a-~~~~~aki~es~~~ke~iqeqi 241 (520)
++-..|++.|...-+.+. ||.+.=- +-+||..|+.--+.+.. ...........++++..++.++
T Consensus 90 eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L 169 (278)
T PF15294_consen 90 ELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQL 169 (278)
T ss_pred HHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhccchhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---
Q 010022 242 KLMGSDLDGVKK---------ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA--- 309 (520)
Q Consensus 242 K~l~~eIdeLKk---------eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~--- 309 (520)
+.+.......+. ++..+..++..+...+... +..+.....++...-......+-.++.+....-+
T Consensus 170 ~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLe 246 (278)
T PF15294_consen 170 KELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELE 246 (278)
T ss_pred HHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHH
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 010022 310 YFFQYRALLNEAKAMSVKKD 329 (520)
Q Consensus 310 ~f~~~r~~~~karela~~~~ 329 (520)
..|+.....+.++++..++|
T Consensus 247 kKfqqT~ay~NMk~~ltkKn 266 (278)
T PF15294_consen 247 KKFQQTAAYRNMKEILTKKN 266 (278)
T ss_pred HHhCccHHHHHhHHHHHhcc
No 361
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=33.41 E-value=3.2e+02 Score=23.64 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 299 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~ 299 (520)
+++..+++.+......|...++......+.|..-..++....+.+.+.|..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555555555555555555443
No 362
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=33.36 E-value=6.1e+02 Score=26.86 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMA 219 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a 219 (520)
+.+|.++..|+..|..+..
T Consensus 198 r~~l~~l~~lk~eR~~l~~ 216 (339)
T cd09238 198 RSNLEELEALGNERAGIED 216 (339)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3477777777777776443
No 363
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=33.32 E-value=4.8e+02 Score=25.65 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHH---HHHH
Q 010022 331 QGLKELSNSEVEKY---MTLW 348 (520)
Q Consensus 331 ~el~~~~~~eve~f---m~~w 348 (520)
.-|..|+..+++.+ +.+|
T Consensus 190 ~~l~~~~e~~ie~~k~~ie~W 210 (216)
T cd07627 190 NSVEIYLESAIESQKELIELW 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777766 6677
No 364
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.11 E-value=2.6e+02 Score=22.85 Aligned_cols=46 Identities=13% Similarity=0.288 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 256 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 256 dalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LR 301 (520)
..|..++.-..+.++.++..+-..+.+++.+......++.++.++.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444444444444444443
No 365
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=32.95 E-value=2.7e+02 Score=22.69 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHH
Q 010022 111 QLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 111 ~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~L 154 (520)
.|.+.|...++.-..+-.+|+....+.+.+...+....++|+.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555555444444444433
No 366
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.94 E-value=2e+02 Score=21.97 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010022 270 KALDEEIEALQQEVNDVAEKRD 291 (520)
Q Consensus 270 ~al~~ei~~LqeEl~al~~krd 291 (520)
+.+..+++.|..+...+.++..
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 367
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=32.86 E-value=7.4e+02 Score=27.69 Aligned_cols=104 Identities=15% Similarity=0.249 Sum_probs=60.1
Q ss_pred CCCCchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh---HHhHHHHHHHHHhhHH
Q 010022 84 RQYDDPKIRAKIDL-------TDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG---RQYKSVMDDKRKEMEP 153 (520)
Q Consensus 84 p~pDd~~lkakI~~-------a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~---k~~r~~~~~K~kEi~~ 153 (520)
+.||||.+...+.- |..-|-.++.+-+.++..++.+..++.-|.+-|.--+++- .+|=..++. -...
T Consensus 102 w~~ddpDi~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~---nCrk 178 (558)
T PF15358_consen 102 WAPDDPDITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKE---NCRK 178 (558)
T ss_pred CCCCCccHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHH
Confidence 46788887665553 4456677777777777777777777777766664333322 222222211 1111
Q ss_pred HHHHHh--hhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 010022 154 LHQALG--KLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIP 196 (520)
Q Consensus 154 Lqe~L~--klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSLs 196 (520)
+-..+. .+ +....-.+-+-|+.+++.|..+++.++.+
T Consensus 179 Vt~SVedaEi------KtnvLkqnS~~LEekLr~lq~qLqdE~pr 217 (558)
T PF15358_consen 179 VTRSVEDAEI------KTNVLKQNSALLEEKLRYLQQQLQDETPR 217 (558)
T ss_pred HhhhHHHHHH------HhcccccchHHHHHHHHHHHHHhcccCcc
Confidence 111111 11 11234456678999999999999999886
No 368
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=32.71 E-value=3.4e+02 Score=23.69 Aligned_cols=55 Identities=31% Similarity=0.405 Sum_probs=39.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK--AFANIKELR 301 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krde--ay~~i~~LR 301 (520)
+++.|..+.+.+..++..+......++.....-++|=..++..+|- .|..++=||
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~~~~~~~~~ 81 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLR 81 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4666777777777777777777777777777777777777777763 466555554
No 369
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.54 E-value=3.1e+02 Score=31.40 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhCChHhHHHHHH
Q 010022 334 KELSNSEVEKYMTLWNNNKAFRDDYEK 360 (520)
Q Consensus 334 ~~~~~~eve~fm~~wn~d~~FR~dY~k 360 (520)
..||..++-.|++. |+..|..
T Consensus 283 ~~L~g~~i~~~~~~------~~~~y~~ 303 (555)
T TIGR03545 283 VDLFGPEIRKYLQK------FLKYYDQ 303 (555)
T ss_pred HHHhhHHHHHHHHH------HHHHHHH
Confidence 44555665555543 4555554
No 370
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.51 E-value=8.7e+02 Score=28.43 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 010022 204 LREIKQLEGTRE 215 (520)
Q Consensus 204 LkEIsqL~k~Rk 215 (520)
+.+|.+|+.++.
T Consensus 310 l~~~~~l~~ql~ 321 (726)
T PRK09841 310 LEQIVNVDNQLN 321 (726)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 371
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.38 E-value=7.2e+02 Score=27.39 Aligned_cols=183 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred cchhhhhcccccc-ccCCCCCCCCCCcceeecCCCCCCcccCCCCccccCCCCCCCccccCCCCccccceeeeccCCCCc
Q 010022 10 VESVAEVHNSLAQ-ENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDD 88 (520)
Q Consensus 10 ~~~~~~~~~~~~~-en~~~~~~~~~~~~i~fgs~~~~~~~~~~~~~~~~~~~~p~da~~~~~~~~~~~~~yfvKvp~pDd 88 (520)
+.++--.-.+|-| .++--+..|+.+..-+|||+..+..+.-+...-+--++.|.+..+........-. --...+-.
T Consensus 131 ikNkFGSADNI~sl~~~~~~~~~~~~~~~l~~s~~~~~~~ky~S~d~SecSS~tS~S~~~~s~~~~~~~---~~~~~~~~ 207 (395)
T PF10267_consen 131 IKNKFGSADNISSLKDSLDEPNPDSGPRSLSGSSTLTASPKYGSEDSSECSSVTSGSIDANSNSSNSGG---SSQGSSVS 207 (395)
T ss_pred ccCCCCCCCccccccccccccCCCCCCcCCCCCcccccccccCcccccccccCCCCCCCCCCCCCCCCc---cccccccc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHh-------HHhHHHHHHHHHhhHHHHHHHhh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRG-VRGDLAAQLRSLKTEG-------RQYKSVMDDKRKEMEPLHQALGK 160 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~-~R~eL~~qLk~Lr~q~-------k~~r~~~~~K~kEi~~Lqe~L~k 160 (520)
......+..+..++..++..-..+...++.++. -..++.--..+|.++. .+.+...+-.+.||-.|++.|.-
T Consensus 208 ~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 208 SQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELAS 287 (395)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhhcc----ccCCCCCCHHHHHHHHHHHH--HHHhcCCC
Q 010022 161 LRTTNNA----RSGGICSSEEELDDLIRSLQ--YRIQHEII 195 (520)
Q Consensus 161 lre~nnA----rs~~~fkSveEID~rI~~LE--~~IqhgSL 195 (520)
+-+.-.. |.+-.--..|-+-.+|..|| .+.+...+
T Consensus 288 ~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~ 328 (395)
T PF10267_consen 288 MEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQL 328 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 372
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.33 E-value=5.5e+02 Score=26.02 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHhhccchhhHHH
Q 010022 177 EELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKED---IQDQVKLMGSDLDGVKK 253 (520)
Q Consensus 177 eEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~---iqeqiK~l~~eIdeLKk 253 (520)
+++..-|..||.++ |++.+-+..|-+.|+.+....+.++..-..++.-+. +..-+- .+.++..
T Consensus 25 ~~~k~yi~~Le~~L----------k~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~----~laev~~ 90 (234)
T cd07664 25 EEKQQQFENLDQQL----------RKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALS----QLAEVEE 90 (234)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHH----HHHHHHH
Confidence 35556677777766 678888999999999988877777665555554321 111111 1222222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHH
Q 010022 254 ESQAVWAKISH-LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY------------FFQYRALLNE 320 (520)
Q Consensus 254 eldalr~kIke-l~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~------------f~~~r~~~~k 320 (520)
.+..+...-.. .--.+...=.+|-.+-.-.+.+...|..+|..+..+...+..+... +.+....++.
T Consensus 91 ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~ 170 (234)
T cd07664 91 KIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKE 170 (234)
T ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 22222221100 0011122233455556666677777777777765554444433322 2233334433
Q ss_pred HHHHh--hccCHHHHHHHHHHHHHHHH
Q 010022 321 AKAMS--VKKDVQGLKELSNSEVEKYM 345 (520)
Q Consensus 321 arela--~~~~v~el~~~~~~eve~fm 345 (520)
+..-+ +..+...+-.....||++|-
T Consensus 171 ~e~~~~~a~~~fe~Is~~~k~El~rFe 197 (234)
T cd07664 171 WEAKVQQGERDFEQISKTIRKEVGRFE 197 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 24578888888999999994
No 373
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.32 E-value=7.5e+02 Score=27.60 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 253 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 253 keldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdea 293 (520)
.++..+++.-..+..++.....+++.||+++..+++.|=..
T Consensus 34 aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 34 AQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444455666666666666665543
No 374
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.29 E-value=2.6e+02 Score=24.33 Aligned_cols=55 Identities=25% Similarity=0.485 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVK--ALD-EEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~--al~-~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
||++-..+...+..+..+..++. .+. +....|.+++..+...-...-+++..||.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44444444444444444443333 111 24666777777777777777777777776
No 375
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.10 E-value=5.3e+02 Score=25.75 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=9.5
Q ss_pred HHhhccchhhHHHHHHHHHHH
Q 010022 241 VKLMGSDLDGVKKESQAVWAK 261 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~k 261 (520)
-..+.++.+++++....+-.+
T Consensus 111 n~kl~~e~~~lk~~~~eL~~~ 131 (193)
T PF14662_consen 111 NGKLLAERDGLKKRSKELATE 131 (193)
T ss_pred HhHHHHhhhhHHHHHHHHHHh
Confidence 333344455555555444433
No 376
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=31.99 E-value=1.1e+02 Score=24.77 Aligned_cols=28 Identities=39% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010022 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 172 ~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~ 216 (520)
...|++||+.+|.-|+. ||..++..+..
T Consensus 19 s~lSv~EL~~RIa~L~a-----------------EI~R~~~~~~~ 46 (59)
T PF06698_consen 19 SLLSVEELEERIALLEA-----------------EIARLEAAIAK 46 (59)
T ss_pred hhcCHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 46799999999999998 77777777665
No 377
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.98 E-value=3.8e+02 Score=32.03 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=66.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhHHHHHHHH
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN---------IKELRKQRDEGNAYFFQYRA 316 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~---------i~~LRkerde~n~~f~~~r~ 316 (520)
.++..|+....++.+...-+..++-..+.++.+|+++.+++.....--|.. |-+|.+..++++. -.+--
T Consensus 616 ~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~--t~~~~ 693 (1104)
T COG4913 616 AKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTH--TQSDI 693 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcC--ChhHH
Confidence 345556666666666666666667788889999999999988765544444 4455555555553 12233
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010022 317 LLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 317 ~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
.+.++..-+++--+..|+.+|.+||+.-.++-
T Consensus 694 ~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k 725 (1104)
T COG4913 694 AIAKAALDAAQTRQKVLERQYQQEVTECAGLK 725 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667788899999999987665544
No 378
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=31.82 E-value=1.5e+02 Score=24.65 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
|++|++++..++.+-.+..-.+-.|.+++..=..++-.+-.+==.+|..+..+|.+....
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677766666665566666666766666666677777777777777777777766543
No 379
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.60 E-value=2.4e+02 Score=28.85 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 266 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 266 ~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~L 300 (520)
...+..|+..+..++=+++.+.+...+.|..|+.+
T Consensus 67 q~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 67 QSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444443
No 380
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.46 E-value=33 Score=30.58 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHhCChHhHHHH
Q 010022 341 VEKYMTLWNNNKAFRDDY 358 (520)
Q Consensus 341 ve~fm~~wn~d~~FR~dY 358 (520)
+..+-.+++....||..|
T Consensus 113 ~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 113 REEIEELKRQAEQFRAQF 130 (131)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445666666666554
No 381
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=31.44 E-value=5.9e+02 Score=26.09 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010022 206 EIKQLEGTREKVMANAA 222 (520)
Q Consensus 206 EIsqL~k~Rk~v~a~~~ 222 (520)
||+.|+.+-+-+.+++.
T Consensus 44 e~~eLk~qnkli~K~l~ 60 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLS 60 (230)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 88888888887666554
No 382
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=31.37 E-value=5.8e+02 Score=26.01 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHH----H-HHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS----H-LEGKVKALDEE 275 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIk----e-l~~k~~al~~e 275 (520)
.-+|.+...+=+.|..+..++. ..+...+..+..+...+|+.++.+..+|. . ....+...+..
T Consensus 68 ~~vl~qte~iA~~~~~~aE~l~------------~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~ 135 (234)
T cd07686 68 LHMVQQTEQLSKIMKTHAEELN------------SGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCS 135 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777776544332 11233344444445566777777766654 1 23446677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh-------HHHHHHHHHHHHHHHHhhccC----HHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFAN---IKELRKQRDEGN-------AYFFQYRALLNEAKAMSVKKD----VQGLKELSNSEV 341 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~---i~~LRkerde~n-------~~f~~~r~~~~karela~~~~----v~el~~~~~~ev 341 (520)
|..+-.....+..+-.+++.. ....+..+++.. +.|--.....+.-++-=+.-+ ...||.++..=|
T Consensus 136 Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ~l~E~rv 215 (234)
T cd07686 136 YRQLTKEVNSAKEKYKDAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQKMQEEMI 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777777666542 233444433332 233333333333333333333 346777777777
Q ss_pred HHHHHHH
Q 010022 342 EKYMTLW 348 (520)
Q Consensus 342 e~fm~~w 348 (520)
-.+..+|
T Consensus 216 ~~ln~i~ 222 (234)
T cd07686 216 KALKGIL 222 (234)
T ss_pred HHHHHHH
Confidence 7777777
No 383
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=31.18 E-value=4.6e+02 Score=24.81 Aligned_cols=102 Identities=12% Similarity=0.269 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHhhccCH
Q 010022 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD---EGNAYFFQYRALLNEAKAMSVKKDV 330 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd---e~n~~f~~~r~~~~karela~~~~v 330 (520)
.++.+-..+..+.+.++.+...+..+..+-.++...=+.+..+-..|..-.+ ..-.+|-..-...+...--...-+.
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~ 94 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNS 94 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccc
Confidence 3333333444444444444444444444444444444444444444444444 3344444444444443321111111
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHhHH
Q 010022 331 QGLKELSNSEVEKYMTLWNNNKAFRD 356 (520)
Q Consensus 331 ~el~~~~~~eve~fm~~wn~d~~FR~ 356 (520)
.... -.-..++.-|.....+..|++
T Consensus 95 ~~F~-~~L~~LD~cl~Fl~~h~~fke 119 (157)
T PF04136_consen 95 DSFK-PMLSRLDECLEFLEEHPNFKE 119 (157)
T ss_pred hHHH-HHHHHHHHHHHHHHHhhhhhh
Confidence 1111 134556666777777777765
No 384
>PHA03386 P10 fibrous body protein; Provisional
Probab=30.74 E-value=2.6e+02 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010022 259 WAKISHLEGKVKALDEEIEALQ 280 (520)
Q Consensus 259 r~kIkel~~k~~al~~ei~~Lq 280 (520)
+.-|+++.+++++++..++.++
T Consensus 11 r~dIkavd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 11 LDAVQEVDTKVDALQTQLNGLE 32 (94)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3333344444444333333333
No 385
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=30.47 E-value=9.9e+02 Score=28.42 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=61.7
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----
Q 010022 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR----- 315 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r----- 315 (520)
++.+...++.|++++..-...|.+|....+++++.+..-..++..+.-+++.+-..+..+...+++....|..-.
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~ 668 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSI 668 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 334444455556655555555566666666666666666666666666667777777777777777666555432
Q ss_pred ------HHHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHH
Q 010022 316 ------ALLNEAKAMSVK--KDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 316 ------~~~~karela~~--~~v~el~~~~~~eve~fm~~w 348 (520)
....+++-.|.. +.-.+..--|.--+--+++|-
T Consensus 669 ~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALM 709 (786)
T PF05483_consen 669 SEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALM 709 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 223444444433 344555555655554444444
No 386
>PHA03386 P10 fibrous body protein; Provisional
Probab=30.41 E-value=1.4e+02 Score=26.41 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=5.3
Q ss_pred chhhHHHHHHHHH
Q 010022 247 DLDGVKKESQAVW 259 (520)
Q Consensus 247 eIdeLKkeldalr 259 (520)
+.+.|+...+.++
T Consensus 20 KVdaLQ~qV~dv~ 32 (94)
T PHA03386 20 KVDALQTQLNGLE 32 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 387
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=30.31 E-value=6.6e+02 Score=27.33 Aligned_cols=45 Identities=9% Similarity=0.179 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHH
Q 010022 172 ICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 172 ~fkSveEID~rI~~LE~~IqhgSL--sL~EEKklLkEIsqL~k~Rk~ 216 (520)
.+...+.+..++..|+..+...++ ....=..++++.+.|...-..
T Consensus 21 ~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~ 67 (367)
T PRK00578 21 GVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDT 67 (367)
T ss_pred hhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999987765 344444567777777666554
No 388
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.97 E-value=4.9e+02 Score=24.70 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=12.2
Q ss_pred HHhhhhhccCCCCCCCCC
Q 010022 365 SLDMRQLSRDGRIRNPDE 382 (520)
Q Consensus 365 s~~~R~~~~DGR~~~pde 382 (520)
-.++-+++.|+=.++-|.
T Consensus 100 ~av~allD~d~l~l~~dg 117 (155)
T PF06810_consen 100 KAVKALLDLDKLKLDDDG 117 (155)
T ss_pred HHHHHhcCHHHeeeCCCc
Confidence 344566777777777776
No 389
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=29.92 E-value=5.8e+02 Score=25.56 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDRE 101 (520)
Q Consensus 89 ~~lkakI~~a~ke 101 (520)
..+.+.|..++.+
T Consensus 5 ~d~d~~~~~~~~e 17 (207)
T PF05010_consen 5 KDLDAAIKKVQEE 17 (207)
T ss_pred HhHHHHHHHHHHH
Confidence 3445555555555
No 390
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=29.92 E-value=8.1e+02 Score=27.23 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=14.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHhHHhHHHHH
Q 010022 117 RAKRGVRGDLAAQLRSLKTEGRQYKSVMD 145 (520)
Q Consensus 117 ~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~ 145 (520)
.....+|.....+|...+++....+..+.
T Consensus 98 ~~~e~er~~~~~El~~~r~e~~~v~~~~~ 126 (499)
T COG4372 98 RAAETEREAARSELQKARQEREAVRQELA 126 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556555555544444333
No 391
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.81 E-value=2.4e+02 Score=31.29 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh--HHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHH
Q 010022 92 RAKIDLTDREIQRRNQARMQLMDELRAK--RGV--RGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~a~i~~~--R~~--R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~L 154 (520)
..+.-.+..+++.++..|+.+...|... +.. ...++++++.|..+...+.........+++.+
T Consensus 35 d~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 35 DEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333344444555555555555555421 111 24455555555555555544444444444443
No 392
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=29.81 E-value=1.9e+02 Score=22.80 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010022 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMG 232 (520)
Q Consensus 172 ~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~ 232 (520)
.+.|.++|..++++|+..|+ +||..|++- |.+.+..|-++|+
T Consensus 6 k~ls~~eL~~rl~~LD~~ME-------------~Eieelr~R------Y~~KRqPIldAie 47 (49)
T PF11629_consen 6 KFLSYEELQQRLASLDPEME-------------QEIEELRQR------YQAKRQPILDAIE 47 (49)
T ss_dssp GGS-HHHHHHHHHHHHHHHH-------------HHHHHHHHH------HHHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHhCCHHHH-------------HHHHHHHHH------HHHhhccHHHHHh
Confidence 36799999999999999776 466666654 3344555555443
No 393
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=29.74 E-value=3.4e+02 Score=22.81 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhH
Q 010022 293 AFANIKELRKQRDEGNA 309 (520)
Q Consensus 293 ay~~i~~LRkerde~n~ 309 (520)
...++..+++.....+.
T Consensus 62 y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 394
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.63 E-value=3.8e+02 Score=28.80 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhh
Q 010022 111 QLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 111 ~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~kl 161 (520)
.+...-+.+.+..+.+...+.++..-+..+-..+...++.++.|...|++.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555566777777888888888888888888888888888754
No 395
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.63 E-value=6.5e+02 Score=26.09 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA-YFFQYRALL 318 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~-~f~~~r~~~ 318 (520)
|..+..+...|++|.+....|..+-+.|+.....+-.+-+++.-.+..||.++-+.+. -.|+++...
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~e 156 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVIE 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHHh
Confidence 5556667778888888888999999999999999999999999999999988888776 345555443
No 396
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.53 E-value=8.6e+02 Score=27.46 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=7.1
Q ss_pred ccCCCCCCCCCC
Q 010022 372 SRDGRIRNPDEK 383 (520)
Q Consensus 372 ~~DGR~~~pde~ 383 (520)
+-||+..-||--
T Consensus 233 ~~~g~~~rPDvi 244 (475)
T PRK10361 233 NDARSRMQPDVI 244 (475)
T ss_pred CCCCCeeCCeEE
Confidence 456766666643
No 397
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.42 E-value=2.6e+02 Score=22.74 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhHHhHH
Q 010022 88 DPKIRAKIDLTDREIQRRNQARMQLMDELRAK-RGVRGDLAAQLRSLKTEGRQYKS 142 (520)
Q Consensus 88 d~~lkakI~~a~keI~kl~q~R~~I~a~i~~~-R~~R~eL~~qLk~Lr~q~k~~r~ 142 (520)
.+.-+..|..++..|..+.+...++--++... .+.|..+..+|+..+.+...++.
T Consensus 20 ~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 20 GEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666665554444444333332 25566666666555555444433
No 398
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.23 E-value=3.4e+02 Score=22.69 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQ-----QEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~Lq-----eEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~ka 321 (520)
.|..+...++.....|..|......+...+.... ..+.....-++.+-..|..+..........+-..+..+..
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~- 84 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQE- 84 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHhhccCHHHHHHHHHHHHHHH
Q 010022 322 KAMSVKKDVQGLKELSNSEVEKY 344 (520)
Q Consensus 322 rela~~~~v~el~~~~~~eve~f 344 (520)
+..++.-++-|-...-..|
T Consensus 85 ----a~~~~k~~e~L~e~~~~~~ 103 (123)
T PF02050_consen 85 ----ARRERKKLEKLKERRREEY 103 (123)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHH
No 399
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.22 E-value=3.4e+02 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 258 VWAKISHLEGKVKALDEEIEALQQEVN 284 (520)
Q Consensus 258 lr~kIkel~~k~~al~~ei~~LqeEl~ 284 (520)
+...+..|.+.+..|-.++...+++.+
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~ 47 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENE 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444444333333443333333
No 400
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.09 E-value=2.1e+02 Score=33.22 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 275 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 275 ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
+++.|-+++..|+.++-..-..-+.|+++||.+-.++-+
T Consensus 170 ~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD~ll~eLS~ 208 (626)
T PRK08871 170 RINQIALEIRDIHRLMMRTPGPHNDLMDQHEKLVKELSQ 208 (626)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHh
Confidence 344444444444444432222234566666555544433
No 401
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.92 E-value=3.7e+02 Score=22.95 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
||.||.+.+.+-..+...+..-+.+...+++--.+++.+....-++...=..++.++.+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 402
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=28.82 E-value=2e+02 Score=30.32 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=9.0
Q ss_pred HhCChHhHHHHHHH
Q 010022 348 WNNNKAFRDDYEKR 361 (520)
Q Consensus 348 wn~d~~FR~dY~k~ 361 (520)
-|++-.|-.+|.+-
T Consensus 207 qNd~~~f~~kY~~e 220 (308)
T PF06717_consen 207 QNDPEKFEEKYYKE 220 (308)
T ss_pred ccChHHHHHhcccc
Confidence 46666677777663
No 403
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.66 E-value=1.3e+02 Score=28.55 Aligned_cols=9 Identities=22% Similarity=0.136 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 010022 252 KKESQAVWA 260 (520)
Q Consensus 252 Kkeldalr~ 260 (520)
++|+.+++.
T Consensus 46 ~~Ei~~l~~ 54 (161)
T PF04420_consen 46 RKEILQLKR 54 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 404
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.44 E-value=5.9e+02 Score=25.18 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKV--KALDEEIEALQQEVNDVAEKR 290 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~--~al~~ei~~LqeEl~al~~kr 290 (520)
++.+..+-+.|++|..-+ ..+++++++|.++.....+..
T Consensus 99 ~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 99 QQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444332 234444444444444443333
No 405
>PRK11020 hypothetical protein; Provisional
Probab=28.17 E-value=4.4e+02 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010022 271 ALDEEIEALQQEVNDVAEKRD 291 (520)
Q Consensus 271 al~~ei~~LqeEl~al~~krd 291 (520)
....+++.|..++..++..+.
T Consensus 35 qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 35 QFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 406
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=28.11 E-value=2.3e+02 Score=27.45 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010022 279 LQQEVNDVAEKRDKAFANIKELRKQRDEGN 308 (520)
Q Consensus 279 LqeEl~al~~krdeay~~i~~LRkerde~n 308 (520)
|....+.+......--..|..|+.+.+..+
T Consensus 147 l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 147 LKTDVDELQSILAGENGDIPQLQKQIENLN 176 (184)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 333333333333333344444554444433
No 407
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=27.99 E-value=3.9e+02 Score=22.89 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q 010022 297 IKELRKQRDEGNAYFFQYRAL 317 (520)
Q Consensus 297 i~~LRkerde~n~~f~~~r~~ 317 (520)
...|...+......|...+..
T Consensus 91 ~~~L~~~f~~~m~~fq~~Q~~ 111 (117)
T smart00503 91 TEKLRKKFKEVMNEFQRLQRK 111 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 408
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.81 E-value=1.4e+02 Score=23.20 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMD 114 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a 114 (520)
+.+..+|+.++.+|..|.++|..+..
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888777766554
No 409
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=27.69 E-value=1e+03 Score=27.60 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010022 202 QILREIKQLEGTREKVMA 219 (520)
Q Consensus 202 klLkEIsqL~k~Rk~v~a 219 (520)
-+=+||+.|.++|.++..
T Consensus 46 DLKkEIKKLQRlRdQIKt 63 (575)
T KOG2150|consen 46 DLKKEIKKLQRLRDQIKT 63 (575)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355788888889988543
No 410
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=27.56 E-value=2.1e+02 Score=26.73 Aligned_cols=50 Identities=14% Similarity=0.318 Sum_probs=34.8
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 243 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 243 ~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krde 292 (520)
.+.+++.+.+..+.....-++.|+.++.+-+.+|..|..+++.+......
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~ 126 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKS 126 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777777777777777777776654433
No 411
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=27.35 E-value=6.2e+02 Score=25.06 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCChHhHHHHHHHhHHHH
Q 010022 336 LSNSEVEKYMTLWNNNKAFRDDYEKRLLQSL 366 (520)
Q Consensus 336 ~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~ 366 (520)
.+..++-.++..+-.-...|=.+.+.++|+.
T Consensus 186 ~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~ 216 (236)
T cd07651 186 IWNREWKAALDDFQDLEEERIQFLKSNCWTF 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555666667777666654
No 412
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.30 E-value=1.3e+03 Score=28.76 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010022 200 EKQILREIKQLEGTREKVMANAA 222 (520)
Q Consensus 200 EKklLkEIsqL~k~Rk~v~a~~~ 222 (520)
+|.++.|-.+|...-..+..+++
T Consensus 438 ~K~L~~E~ekl~~e~~t~~~s~~ 460 (1195)
T KOG4643|consen 438 EKKLQFELEKLLEETSTVTRSLS 460 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555555555554444444333
No 413
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=27.20 E-value=4.1e+02 Score=26.24 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
++-|+.+.+.+..+.-.+......||.+.++.....|+
T Consensus 26 ~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~ 63 (201)
T PRK02195 26 LPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEA 63 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555556555554443333
No 414
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=26.97 E-value=9.2e+02 Score=26.95 Aligned_cols=74 Identities=23% Similarity=0.386 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Q 010022 263 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVE 342 (520)
Q Consensus 263 kel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve 342 (520)
|+.+.-++.-.++...|..-|....+++++|..- +++ ......+-+++|+ +
T Consensus 26 KqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l------------------------~~e--~e~kLee~e~~Cn---~ 76 (436)
T PF01093_consen 26 KQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKL------------------------ANE--VEEKLEEEEEVCN---E 76 (436)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHH--HHHHHHHHHHHHH---H
Confidence 3444444455556666666666666666554433 333 2334566778886 5
Q ss_pred HHHHHHhCChHhHHHHHHHhHHHHhhhhhcc
Q 010022 343 KYMTLWNNNKAFRDDYEKRLLQSLDMRQLSR 373 (520)
Q Consensus 343 ~fm~~wn~d~~FR~dY~k~~~~s~~~R~~~~ 373 (520)
..|++|. ==|--|-+||+|+-|+
T Consensus 77 sm~~lWe--------ECkpCL~~tCm~FYt~ 99 (436)
T PF01093_consen 77 SMMALWE--------ECKPCLKQTCMRFYTR 99 (436)
T ss_pred HHHHHHH--------HHHHHHHHHhHHHHhc
Confidence 7889993 2344577777777773
No 415
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=26.86 E-value=3.5e+02 Score=22.54 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
|+++.+++..++.+--...-.+..+-+.++.---++.++-.+--++|.+++.++.+.-++
T Consensus 8 l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELakl 67 (71)
T COG5420 8 LEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAKL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555444444444455555566666677777777778888888777766543
No 416
>PHA03011 hypothetical protein; Provisional
Probab=26.77 E-value=4.8e+02 Score=23.60 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=14.5
Q ss_pred hhHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 010022 235 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLE 266 (520)
Q Consensus 235 e~iqeqiK~l~~eIdeLKkeldalr~kIkel~ 266 (520)
.++.+++..+.+..++|-.+.+-+.+.++.+.
T Consensus 60 Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~ 91 (120)
T PHA03011 60 NAIIEILDELIAQYNELLDEYNLIENEIKDLE 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 417
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=26.71 E-value=4.4e+02 Score=23.16 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKEL------RKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVE 342 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~L------Rkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve 342 (520)
...+..+++......++.+..+..+ +...++....|-.|+....++-+++..|+..+...++..++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 149 (181)
T PF12729_consen 77 RQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILNGEAR 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHH
Confidence 4455555555555555555555444 555667777888888889999999999999988888888774
No 418
>PRK11020 hypothetical protein; Provisional
Probab=26.50 E-value=3.3e+02 Score=25.07 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010022 285 DVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 285 al~~krdeay~~i~~LRkerd 305 (520)
....+++.+..+|..|+.++.
T Consensus 35 qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 35 QFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666555
No 419
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=26.44 E-value=8.6e+02 Score=26.44 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=41.1
Q ss_pred hhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHH
Q 010022 150 EMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREKV 217 (520)
Q Consensus 150 Ei~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSL--sL~EEKklLkEIsqL~k~Rk~v 217 (520)
.++.|...+..+. .+...+.+..++..|+..+...++ ....=..++++++.|+.....+
T Consensus 8 ~~~~~~~~~~~~~---------~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~ 68 (364)
T TIGR00020 8 RIEDLTSRLDTVR---------GSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTL 68 (364)
T ss_pred HHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555442 377889999999999999988776 3444457778888777776553
No 420
>PRK06285 chorismate mutase; Provisional
Probab=26.43 E-value=3.9e+02 Score=23.05 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
+..+..+|+.+..++-.+.++|-.+-..+..++...
T Consensus 9 L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~~ 44 (96)
T PRK06285 9 LNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKSL 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555567777777777778888888887777754
No 421
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=26.31 E-value=9.7e+02 Score=26.99 Aligned_cols=75 Identities=8% Similarity=0.093 Sum_probs=40.4
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhHHH
Q 010022 237 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA-----NIKELRKQRDEGNAYF 311 (520)
Q Consensus 237 iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~-----~i~~LRkerde~n~~f 311 (520)
+.++-..+-..+..+-..++.++. .+...+...-++++.|-+++..|+.++..+-. .=+.|+++||.+-.++
T Consensus 133 vl~~a~~l~~~~n~~~~~L~~~~~---~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndL~DqRD~ll~eL 209 (547)
T PRK08147 133 LIGKAEGLVNQFKTTDQYLRDQDK---GVNTAIGSSVDQINNYAKQIASLNDQITRLTGVGAGASPNDLLDQRDQLVSEL 209 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHH
Confidence 333333333334444445555443 33444455555666777777777777655432 2356788877776655
Q ss_pred HHH
Q 010022 312 FQY 314 (520)
Q Consensus 312 ~~~ 314 (520)
-++
T Consensus 210 S~~ 212 (547)
T PRK08147 210 NQI 212 (547)
T ss_pred Hhh
Confidence 443
No 422
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.99 E-value=3.6e+02 Score=22.00 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
+..++.++..++.+++.+...++.|..........+..+-..|.+|..
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 423
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=25.64 E-value=6.9e+02 Score=25.03 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=12.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEE 275 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~e 275 (520)
+|..+..+.+.+...+..+...|..+-..
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~r 98 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKR 98 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444444444433333
No 424
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.55 E-value=8e+02 Score=27.76 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=40.2
Q ss_pred eeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010022 79 YFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQL 130 (520)
Q Consensus 79 yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qL 130 (520)
.++|.-.|+=|.+++.|..+++.+..+..+-..+.......+.+-.....+|
T Consensus 117 ~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~l 168 (507)
T PF05600_consen 117 ILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQL 168 (507)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999998777777766666655555444444
No 425
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.53 E-value=2.9e+02 Score=26.95 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010022 297 IKELRKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 297 i~~LRkerde~n~~f~~~r~~~~kare 323 (520)
+.+|++++-...++|.++|+...+-++
T Consensus 35 ~~elkd~~lR~~AefeN~rkR~~ke~~ 61 (178)
T PRK14161 35 IEELKDKLIRTTAEIDNTRKRLEKARD 61 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566677777766655443
No 426
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=25.37 E-value=3.2e+02 Score=30.61 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEE----------IEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~e----------i~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
-|++-.++..+.+.|+.+.+...+.... ..+++.-++-+..++..+|.++..-|+.+..
T Consensus 403 dDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la~eE~a~qe~~q~lddlDkqI~qaYvKr~r~~kkrKk 471 (516)
T KOG4191|consen 403 DDEVLAELRKLQAELKAVSAHNRKKKHDLLRLAPEEMARQEFQQVLDDLDKQIEQAYVKRNRSRKKRKK 471 (516)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666555443332 4567777888888888888888887777653
No 427
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=25.37 E-value=7.1e+02 Score=25.11 Aligned_cols=7 Identities=29% Similarity=0.762 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 010022 201 KQILREI 207 (520)
Q Consensus 201 KklLkEI 207 (520)
.++|++|
T Consensus 133 ~~mL~em 139 (264)
T PF06008_consen 133 QRMLEEM 139 (264)
T ss_pred HHHHHHH
Confidence 3455555
No 428
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.34 E-value=8.3e+02 Score=25.85 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 206 EIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD 273 (520)
Q Consensus 206 EIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~ 273 (520)
.-..|.+.|.++..-...+.. +|.-+.+.|+..|+.++.+...|+-++..++..+
T Consensus 75 ~c~~lek~rqKlshdlq~Ke~-------------qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 75 SCENLEKTRQKLSHDLQVKES-------------QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHhhHHHhhhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888776554433322 3334444566667777777777766666665443
No 429
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=25.33 E-value=4.2e+02 Score=22.43 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=36.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHH
Q 010022 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAK-----RGVRGDLAAQLRSLKTE 136 (520)
Q Consensus 85 ~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~-----R~~R~eL~~qLk~Lr~q 136 (520)
.|-..++..=|..++.++..++-....+.+.++.. +..|..|...|+.|...
T Consensus 9 ~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~ 65 (79)
T PF06657_consen 9 QSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKR 65 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 44456777778888888887777777775555443 46777887777777555
No 430
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=25.32 E-value=6.8e+02 Score=24.86 Aligned_cols=29 Identities=3% Similarity=0.040 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCChHhHHHHHHHhHHH
Q 010022 337 SNSEVEKYMTLWNNNKAFRDDYEKRLLQS 365 (520)
Q Consensus 337 ~~~eve~fm~~wn~d~~FR~dY~k~~~~s 365 (520)
+..+++.+|..+..+.+.++....-+.--
T Consensus 149 ~~eei~~~i~~~~~~~~~~~~~~~~i~~~ 177 (215)
T PF07083_consen 149 IEEEIDDQIDKIKQDLEEIKAAKQAIEEK 177 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888877777777766544433
No 431
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=25.21 E-value=8.7e+02 Score=26.05 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=11.1
Q ss_pred HHHhhHHHHHHHHHHHHHHhHHhH
Q 010022 118 AKRGVRGDLAAQLRSLKTEGRQYK 141 (520)
Q Consensus 118 ~~R~~R~eL~~qLk~Lr~q~k~~r 141 (520)
-+..+..++..+|.....+...|+
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445544444444444
No 432
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.19 E-value=1e+03 Score=27.00 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 010022 124 GDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 203 (520)
Q Consensus 124 ~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKkl 203 (520)
.+|..+++.-.++...+|..++...+.+..|+ ...+ ..+...+++..+-.+|.| |+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq--------k~~a---d~~~KI~~~k~r~~~Ls~-------------Ri 392 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ--------KHHA---DAVAKIEEAKNRHVELSH-------------RI 392 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhh---hHHHHHHHHHHHHHHHHH-------------HH
Confidence 45666666666666666665544444443333 1110 113345566666666655 45
Q ss_pred HHHHHHHHHHHHH
Q 010022 204 LREIKQLEGTREK 216 (520)
Q Consensus 204 LkEIsqL~k~Rk~ 216 (520)
|+=|-.++-+|+.
T Consensus 393 LRv~ikqeilr~~ 405 (508)
T KOG3091|consen 393 LRVMIKQEILRKR 405 (508)
T ss_pred HHHHHHHHHHhcc
Confidence 5555555555553
No 433
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=25.11 E-value=2.8e+02 Score=29.50 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010022 278 ALQQEVNDVAEK 289 (520)
Q Consensus 278 ~LqeEl~al~~k 289 (520)
.|+.+.+.+...
T Consensus 38 ~l~~~~~~~~~~ 49 (378)
T TIGR01554 38 ELETDVEKLKEE 49 (378)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 434
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.06 E-value=4.2e+02 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 96 DLTDREIQRRNQARMQLMDELRAKR 120 (520)
Q Consensus 96 ~~a~keI~kl~q~R~~I~a~i~~~R 120 (520)
+.|+.++..|...|-+|...|..+|
T Consensus 14 ~~L~~EL~~L~~~r~~i~~~i~~Ar 38 (158)
T PRK05892 14 DHLEAELARLRARRDRLAVEVNDRG 38 (158)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444455444545544444433
No 435
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.02 E-value=7.6e+02 Score=25.31 Aligned_cols=27 Identities=4% Similarity=0.155 Sum_probs=19.6
Q ss_pred cCCCCc--hHHHHHHHHHHHHHHHHHHHH
Q 010022 83 HRQYDD--PKIRAKIDLTDREIQRRNQAR 109 (520)
Q Consensus 83 vp~pDd--~~lkakI~~a~keI~kl~q~R 109 (520)
|..||. .+++..++.++..|..+....
T Consensus 49 v~~~~~eF~Emkey~d~L~~~L~~ieki~ 77 (243)
T cd07666 49 VKNRPEEFTEMNEYVEAFSQKINVLDKIS 77 (243)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 346776 788888998888777766433
No 436
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=24.88 E-value=1.6e+02 Score=26.21 Aligned_cols=71 Identities=8% Similarity=0.203 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhh
Q 010022 90 KIRAKIDLTDREIQRRNQARM-QLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGK 160 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~-~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~k 160 (520)
.+....+.++.++..|....+ +...-+...|..|..+..+...|..+.......+.....++..|+..+..
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777788888877775 55555666777788888888888877777776666666666666655543
No 437
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.79 E-value=7.8e+02 Score=25.33 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQ 280 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~Lq 280 (520)
..+++.|++-...-+.+.+ .....++++..-.+-+++=...+--+.+.|+....+++.+...+..|.
T Consensus 47 ~efar~lS~~~~e~e~l~~-------------~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lk 113 (246)
T KOG4657|consen 47 VEFARALSQSQVELENLKA-------------DLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLK 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhhh------HHHHH
Q 010022 281 QEVNDVAEKRDKAFA---NIKELRKQRDEGN------AYFFQ 313 (520)
Q Consensus 281 eEl~al~~krdeay~---~i~~LRkerde~n------~~f~~ 313 (520)
++.+..++.+..... +-+++.-+|.... ..||+
T Consensus 114 eE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~wy~ 155 (246)
T KOG4657|consen 114 EEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAASWYN 155 (246)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH
No 438
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.78 E-value=2e+02 Score=25.27 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 287 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~ 287 (520)
++-+.+.++.+...++.+.+.+..+..+++.+...+..+.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 439
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=24.72 E-value=8.9e+02 Score=26.00 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010022 285 DVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 326 (520)
Q Consensus 285 al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~ 326 (520)
.+..-.+++.++...++++.+++-.+.|.+-..++++|-++-
T Consensus 292 ~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR~lVl 333 (336)
T PF05055_consen 292 AVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRARTLVL 333 (336)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777888999999999999999999999998764
No 440
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.67 E-value=7.1e+02 Score=24.86 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010022 199 EEKQILREIKQLEGTREKVM 218 (520)
Q Consensus 199 EEKklLkEIsqL~k~Rk~v~ 218 (520)
||-++=+|+..|+.....+.
T Consensus 97 EevrLkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655543
No 441
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.40 E-value=7.7e+02 Score=25.16 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 010022 205 REIKQLEGTREKV 217 (520)
Q Consensus 205 kEIsqL~k~Rk~v 217 (520)
+||+.|.+.|.++
T Consensus 49 kEIKKLQR~RdQI 61 (233)
T PF04065_consen 49 KEIKKLQRLRDQI 61 (233)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555553
No 442
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=24.38 E-value=8.9e+02 Score=25.88 Aligned_cols=84 Identities=14% Similarity=0.344 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 010022 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE-EIEAL 279 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~-ei~~L 279 (520)
..+++-|.+|++.+..+....... + +-+ -+.|.++++.++..--++...+.+-+. .++.|
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~E----------E---E~l------tn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL 140 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQE----------E---EFL------TNDLSRKLNQLRQEKVELENQLEQEQEYLVNKL 140 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------H---HHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 468889999999988764322211 0 001 124455555555544455555554443 26677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 280 QQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 280 qeEl~al~~krdeay~~i~~LRke 303 (520)
+..+..+.......-..+..|+.+
T Consensus 141 ~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 141 QKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 777766655554444555555543
No 443
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.37 E-value=1.2e+03 Score=28.19 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=14.9
Q ss_pred HHHhCChHhHH-HHHHHhHHHHhhhhhc
Q 010022 346 TLWNNNKAFRD-DYEKRLLQSLDMRQLS 372 (520)
Q Consensus 346 ~~wn~d~~FR~-dY~k~~~~s~~~R~~~ 372 (520)
++-..|.+.+. .-.-|.|.+...|+|+
T Consensus 530 tlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 530 TLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444433 2345667777777775
No 444
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=24.18 E-value=5.3e+02 Score=27.65 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=49.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh
Q 010022 87 DDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 87 Dd~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~ 159 (520)
+++.+.--|+.|+-|+. .|..+..+++.+..++..+...++..+.....+...+..-++-..+++..++
T Consensus 85 ~~~~H~lml~RL~~EL~----~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 85 EDDEHQLMLARLEFELE----QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred CCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 45677778888887665 3556777777777777788777777777777777766666666677776664
No 445
>PRK07857 hypothetical protein; Provisional
Probab=24.10 E-value=3.4e+02 Score=24.47 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKR 120 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R 120 (520)
..++.+|+.++.+|-.+-..|..+..+|...|
T Consensus 31 ~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K 62 (106)
T PRK07857 31 DELREEIDRLDAEILALVKRRTEVSQAIGKAR 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888877777776654
No 446
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=24.00 E-value=2e+02 Score=23.60 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRG 121 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~ 121 (520)
.++.+|+.++.+|-.|-..|..+..++...+.
T Consensus 3 ~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~ 34 (76)
T TIGR01807 3 ELRNKIDAIDDRILDLLSERATYAQAVGELKG 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888777777777766655443
No 447
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.26 E-value=9.5e+02 Score=25.81 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQL 112 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I 112 (520)
+.+..++..|+-||.+|.+....+
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666665444433
No 448
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=23.22 E-value=6.5e+02 Score=28.85 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHH
Q 010022 269 VKALDEEIEALQQEVNDVAEKRDKAF---ANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~al~~krdeay---~~i~~LRkerde~n~~f~~ 313 (520)
+...-++++.|-.++..++.++-..- ..-+.|+++||.+-+++-+
T Consensus 165 I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~ 212 (552)
T COG1256 165 IAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQ 212 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHh
Confidence 33344445555555555555555542 2345666666666654433
No 449
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.19 E-value=5e+02 Score=22.58 Aligned_cols=83 Identities=11% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCC
Q 010022 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGI 172 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~ 172 (520)
..+.....+++-|..--.....+.......-..+...++.|.++..+ +...+++|+.+...+..|=
T Consensus 14 ~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~----l~~~l~~Id~Ie~~V~~LE---------- 79 (99)
T PF10046_consen 14 SELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEE----LQPYLQQIDQIEEQVTELE---------- 79 (99)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH----------
Confidence 34444444444333333333334444444444444444444444332 3334455555555555441
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 010022 173 CSSEEELDDLIRSLQYRI 190 (520)
Q Consensus 173 fkSveEID~rI~~LE~~I 190 (520)
.++..||.-+.+||.++
T Consensus 80 -~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 80 -QTVYELDEYSKELESKF 96 (99)
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 25677888888888765
No 450
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=23.15 E-value=8.2e+02 Score=25.00 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 010022 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVM 218 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~ 218 (520)
.-+-+..+|+-++..|.+.|=+.. -|..|++.|..+.
T Consensus 148 kceam~lKLr~~~~~iL~~TYTpe-------~v~Al~~Ir~~L~ 184 (238)
T PF14735_consen 148 KCEAMILKLRVLELEILSDTYTPE-------TVPALRKIRDHLE 184 (238)
T ss_pred HHHHHHHHHHHHHHHHHHccCCHH-------hHHHHHHHHHHHH
Confidence 345677788889998888888732 3667777766643
No 451
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=23.12 E-value=5e+02 Score=22.52 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY 310 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerde~n~~ 310 (520)
+..+.+...-+..++..+-.+.-++....|.+..+
T Consensus 26 ~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e 60 (96)
T PF08647_consen 26 LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE 60 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333333333333333333333333333333
No 452
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=23.06 E-value=6.9e+02 Score=24.13 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=41.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK-RDKAFANIKELRK 302 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~k-rdeay~~i~~LRk 302 (520)
.+.+++.+++.|...|+.|..-+.-+..+++-+..++-....- -+++-+++.+|+-
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~ 129 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKM 129 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888899999999999999988888777665554 5555555554444
No 453
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.87 E-value=8.8e+02 Score=25.27 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010022 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~ 216 (520)
-.+.|+.++..||.++-+..-+ ..+..|..|++..=.
T Consensus 155 ~le~i~~~~~~ie~~l~~~~~~-----~~l~~l~~l~~~l~~ 191 (322)
T COG0598 155 VLEQIEDELEAIEDQLLASTTN-----EELERLGELRRSLVY 191 (322)
T ss_pred HHHHHHHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHH
Confidence 3567888899999988887777 667777777766443
No 454
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.83 E-value=7.8e+02 Score=28.61 Aligned_cols=44 Identities=11% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 259 WAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 259 r~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
-.+|+.+-+++..|+.+|......-+.|.++||.+..+|.+|=.
T Consensus 168 V~~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD~ll~eLS~~v~ 211 (626)
T PRK08871 168 VERINQIALEIRDIHRLMMRTPGPHNDLMDQHEKLVKELSQYTK 211 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhhcC
Confidence 33444444444444444433322345788888888888777644
No 455
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.67 E-value=2.7e+02 Score=29.97 Aligned_cols=6 Identities=0% Similarity=0.224 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010022 343 KYMTLW 348 (520)
Q Consensus 343 ~fm~~w 348 (520)
.|+.-|
T Consensus 211 ~~l~~i 216 (370)
T PF02994_consen 211 NFLEEI 216 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344333
No 456
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=22.63 E-value=6.4e+02 Score=25.86 Aligned_cols=44 Identities=30% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010022 294 FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 294 y~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
-..|..|..++.++.. ++..+...|+|.+.+.+ ..+||.+...+
T Consensus 122 ~~~i~~l~~~I~~ll~----------~aE~LGeeG~VdeA~~~-~~~~e~Lk~ek 165 (254)
T PF03194_consen 122 AEKIDELDEKIGELLK----------EAEELGEEGDVDEAQKL-MEEVEKLKEEK 165 (254)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHCCCHHHHHHH-HHHHHHHHHHH
Confidence 3445555555555444 88889999999999977 77888887665
No 457
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=22.52 E-value=1.2e+03 Score=26.88 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=10.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHH
Q 010022 327 KKDVQGLKELSNSEVEKYMTL 347 (520)
Q Consensus 327 ~~~v~el~~~~~~eve~fm~~ 347 (520)
.|.+..|-++-+.-+..++..
T Consensus 270 gG~LgGll~~Rd~~l~~~~~~ 290 (624)
T PRK12714 270 GGQIGGLLEFRSSVLEPTQAE 290 (624)
T ss_pred CccHHHHHHHhhhhHHHHHHH
Confidence 356666665555444444433
No 458
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.52 E-value=7.9e+02 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 272 LDEEIEALQQEVNDVAEKRDKAFAN 296 (520)
Q Consensus 272 l~~ei~~LqeEl~al~~krdeay~~ 296 (520)
+-+++..|...+..-.+.|-...+.
T Consensus 202 v~~Ei~~lk~~l~~e~~~R~~~Dd~ 226 (247)
T PF06705_consen 202 VLEEIAALKNALALESQEREQSDDD 226 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344444444444444444444433
No 459
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.51 E-value=7.5e+02 Score=24.35 Aligned_cols=169 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHH
Q 010022 181 DLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK-VMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVW 259 (520)
Q Consensus 181 ~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~-v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr 259 (520)
..|.+|-..|..--.....=++.|.+|++=++.... +...-...+.+..-+...+.-...+...+..+..+.+++..++
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 010022 260 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNS 339 (520)
Q Consensus 260 ~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~ 339 (520)
+.-..|..++..+..+.+.|...+..+....+....-.+-|=.+.=.....-.+.+..--.---.+++.+-..+... ..
T Consensus 107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v-~~ 185 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQV-SK 185 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-HH
Q ss_pred HHHHHHHHHhC
Q 010022 340 EVEKYMTLWNN 350 (520)
Q Consensus 340 eve~fm~~wn~ 350 (520)
.++..+.-=|+
T Consensus 186 ~l~~~l~~KN~ 196 (201)
T PF13851_consen 186 KLEDVLDSKNQ 196 (201)
T ss_pred HHHHHHHHHHH
No 460
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.49 E-value=7.5e+02 Score=24.33 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
.++..+..+...+-.|+.+...+..+.......|..|...-..++.
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555554444
No 461
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=22.41 E-value=7e+02 Score=23.97 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh----hhhhhhccccCCCC--
Q 010022 100 REIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG----KLRTTNNARSGGIC-- 173 (520)
Q Consensus 100 keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~----klre~nnArs~~~f-- 173 (520)
+-|..+...+.+|..-....|.+...+..+|..++.+ +...+.+.+.|...-+ +|.+. |+ .|
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~-------v~~~I~evD~Le~~er~aR~rL~eV----S~-~f~~ 73 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEE-------VSEVIEEVDKLEKRERQARQRLAEV----SR-NFDR 73 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hhcc
Confidence 3344555666677776677788888888888777666 4444555555544322 12111 11 13
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 010022 174 SSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEG 212 (520)
Q Consensus 174 kSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k 212 (520)
-|.++|..--......+-.=.|--..|+.+...=..|+.
T Consensus 74 ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LEr 112 (159)
T PF05384_consen 74 YSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELER 112 (159)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 267777755554444333323333344443333333333
No 462
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.38 E-value=4.6e+02 Score=21.78 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 299 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~ 299 (520)
+..|..++.-..+-++.+++-+...+.+++.+......++..+..
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444444444433
No 463
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.37 E-value=4.2e+02 Score=30.69 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=15.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHH
Q 010022 327 KKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 327 ~~~v~el~~~~~~eve~fm~~w 348 (520)
.|.+..|-.+.+..+-.+|..+
T Consensus 279 gG~L~gll~~rd~~l~~~~~~L 300 (627)
T PRK06665 279 TGKLGALIELRDTDIRDEINEL 300 (627)
T ss_pred CcchHhHHHHHHhhHHHHHHHH
Confidence 4677777777777776776666
No 464
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=22.28 E-value=2.2e+02 Score=25.20 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKR 120 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R 120 (520)
..++.+|+.++.+|-.|-..|..+..+|...+
T Consensus 7 ~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K 38 (102)
T TIGR01801 7 EDLRAEVDQLNRQILALISRRGEVVAQIGHAK 38 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888877877777776554
No 465
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=22.22 E-value=3.2e+02 Score=27.69 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=5.7
Q ss_pred eeecCCCC
Q 010022 37 IIFGSHGG 44 (520)
Q Consensus 37 i~fgs~~~ 44 (520)
=.||.||+
T Consensus 64 k~fGRYG~ 71 (217)
T PF10147_consen 64 KLFGRYGL 71 (217)
T ss_pred HHHHhhhh
Confidence 36888883
No 466
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.18 E-value=1.6e+02 Score=29.64 Aligned_cols=62 Identities=21% Similarity=0.456 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhHHhHHHHHH--HHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCCh
Q 010022 125 DLAAQLRSLKTEGRQYKSVMDD--KRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPL 197 (520)
Q Consensus 125 eL~~qLk~Lr~q~k~~r~~~~~--K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL 197 (520)
.+..+|+.++.+...++..+.. ..+++=.+...|..++. ..|.+..+++.|+.++..+|++|
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~-----------eIe~~~~~~~~l~~~v~~sti~i 199 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRS-----------EIEQLEGQLKYLDDRVDYSTITI 199 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhceEEEEE
Confidence 3444444444444444443331 23444455566665543 35677788999999999988874
No 467
>PRK04406 hypothetical protein; Provisional
Probab=22.15 E-value=4.8e+02 Score=21.93 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 258 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 258 lr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
+...|..|+.++.=...-|..|++-+-.-...++.+...+..|+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444433
No 468
>PRK02119 hypothetical protein; Provisional
Probab=22.05 E-value=4.7e+02 Score=21.80 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 259 WAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 259 r~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
...|..|+.++.=...-|..|++-+..-...++.+-..+..|+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333444444444444444444444443333
No 469
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=21.84 E-value=5.6e+02 Score=29.44 Aligned_cols=60 Identities=12% Similarity=0.234 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010022 259 WAKISHLEGKVKALDEEIEALQQEVNDV--A-----EKRDKAFANIKELRKQRDEGNAYFFQYRALL 318 (520)
Q Consensus 259 r~kIkel~~k~~al~~ei~~LqeEl~al--~-----~krdeay~~i~~LRkerde~n~~f~~~r~~~ 318 (520)
+.+++.++..+.++..++..|..++..- + ....+++.++.++..+.+++...|-+.-..+
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666665422 1 1466667777777777777777776665533
No 470
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=21.82 E-value=8e+02 Score=24.41 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=11.2
Q ss_pred CCChHH-HHHHHHHHHHHHHHHHHH
Q 010022 194 IIPLSE-EKQILREIKQLEGTREKV 217 (520)
Q Consensus 194 SLsL~E-EKklLkEIsqL~k~Rk~v 217 (520)
.+|+.+ |.++...-++|......+
T Consensus 77 ~~s~~eLeq~l~~~~~~L~~~q~~l 101 (240)
T PF12795_consen 77 NLSLEELEQRLSQEQAQLQELQEQL 101 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433 344455555555554443
No 471
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.81 E-value=5.1e+02 Score=22.19 Aligned_cols=80 Identities=11% Similarity=0.327 Sum_probs=0.0
Q ss_pred ceeeeccCCCCchHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHh---
Q 010022 77 NFYFIRHRQYDDPKIRAKIDLTDREIQRRNQA-------------RMQLMDELRAKRGVRGDLAAQLRSLKTEGRQY--- 140 (520)
Q Consensus 77 ~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~-------------R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~--- 140 (520)
|||.|+ ..+...|+.++.-+..+... +.+|...++.+.....+|..-+......-..|
T Consensus 2 PF~~v~------~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~ 75 (97)
T PF09177_consen 2 PFFVVK------DEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLS 75 (97)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-H
T ss_pred CcHHHH------HHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC
Q ss_pred HHHHHHHHHhhHHHHHHHhhhh
Q 010022 141 KSVMDDKRKEMEPLHQALGKLR 162 (520)
Q Consensus 141 r~~~~~K~kEi~~Lqe~L~klr 162 (520)
...+...+.-+..++..|+.|+
T Consensus 76 ~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 76 EEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
No 472
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=21.68 E-value=1.4e+03 Score=27.18 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=60.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQE--VNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK-- 322 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeE--l~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~kar-- 322 (520)
+||.+|..+...+.-+.+.. ....+-.+++.+... +..+-++.-+.-..+..|.. ..+|...+..+...+
T Consensus 109 ~ld~vK~rm~~a~~~L~EA~-~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~-----~pd~~~r~~~le~l~nr 182 (766)
T PF10191_consen 109 ELDSVKSRMEAARETLQEAD-NWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQD-----VPDYEERRQQLEALKNR 182 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC-----CCchhHHHHHHHHHHHH
Confidence 47777877777776655443 344555555555443 44444444444444444432 113444333333331
Q ss_pred --HHhhccCHHHHHHHHHHHHHHHHH---HHhCChHhHHHHHHHhHHHHhhhh
Q 010022 323 --AMSVKKDVQGLKELSNSEVEKYMT---LWNNNKAFRDDYEKRLLQSLDMRQ 370 (520)
Q Consensus 323 --ela~~~~v~el~~~~~~eve~fm~---~wn~d~~FR~dY~k~~~~s~~~R~ 370 (520)
.++.-.=+.+|......++-.|.. ...--.+|+..|.++....+.+.-
T Consensus 183 LEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W 235 (766)
T PF10191_consen 183 LEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLW 235 (766)
T ss_pred HHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 111112233333333333333322 335678999999999888777663
No 473
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=21.43 E-value=6.1e+02 Score=22.88 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHH--hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 237 IQDQVK--LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 237 iqeqiK--~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdea 293 (520)
|...+. ..+..|+-|-...+..-.+|+++..+.++.-+.++.+-..|..++...|..
T Consensus 42 iE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 42 IENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 474
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.37 E-value=7.7e+02 Score=24.04 Aligned_cols=101 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 010022 207 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQ--VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEA-LQQEV 283 (520)
Q Consensus 207 IsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeq--iK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~-LqeEl 283 (520)
...++.....+.+.....-+-.-.++-+.+++.. ...+...|..|+.+...+..++..+..+.+.+...... .+.+.
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 284 NDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 284 ~al~~krdeay~~i~~LRkerde~ 307 (520)
+....+.+-+......|+.++..+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
No 475
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=21.36 E-value=9.9e+02 Score=25.31 Aligned_cols=224 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred eeeccCCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh------HHhHHHHH---
Q 010022 79 YFIRHRQYDD----PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG------RQYKSVMD--- 145 (520)
Q Consensus 79 yfvKvp~pDd----~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~------k~~r~~~~--- 145 (520)
|..++.++.- ..++..|..++.-+......=..|...++..+....-|..-...+..-. ...-..++
T Consensus 110 ~g~~Wtr~~S~~~~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~ 189 (356)
T cd09237 110 ILAKWTQSPSSSLTASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDD 189 (356)
T ss_pred HhcccccccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCc
Q ss_pred -H----HHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHH---HHHhcC-CCChHHHHHHHHHHHHHHHHHHH
Q 010022 146 -D----KRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQ---YRIQHE-IIPLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 146 -~----K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE---~~Iqhg-SLsL~EEKklLkEIsqL~k~Rk~ 216 (520)
. ....+..|+..|.++......|... +++|...+..-+ -.|.+. ...-.+|--+-.|+.........
T Consensus 190 ~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~----~~~Lk~k~~~DDI~~~ll~~~~~~~~~~e~lF~~eL~kf~p~~~~ 265 (356)
T cd09237 190 SQNEQTVLKQIKQLEELLEDLNLIKEERQRV----LKDLKQKIHNDDISDILILNSKSKSEIEKQLFPEELEKFKPLQNR 265 (356)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccchHHHHHHhcccccchHHHHHHHHHHHcchHHHH
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 217 VMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN 296 (520)
Q Consensus 217 v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~ 296 (520)
|..+...+..+ |.+|+...+.+... ..+.......+....++..+......+|..
T Consensus 266 l~~~~~~Q~~l--------------------l~el~~~~~~f~~~-----~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~ 320 (356)
T cd09237 266 LEATIFKQSSL--------------------INELKIELDKLFKL-----PGVKEKQSKEKSKQKLRKEFFEKLKKAYNS 320 (356)
T ss_pred HHHHHHHHHHH--------------------HHHHHHHHHHHHhC-----ccHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 010022 297 IKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNS 339 (520)
Q Consensus 297 i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~ 339 (520)
..+|..-..++.+.|-.....+...+. .++.||++
T Consensus 321 y~el~~~l~~G~~FY~dL~~~~~~l~~--------~~~~fv~~ 355 (356)
T cd09237 321 FKKFSAGLPKGLEFYDDLLKMAKDLAK--------NVQAFVNQ 355 (356)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHH--------HHHHHhhc
No 476
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=21.34 E-value=9.4e+02 Score=27.57 Aligned_cols=49 Identities=20% Similarity=0.393 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 010022 253 KESQAVWAKISHLEGKVKALDEEIEALQ---QEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 253 keldalr~kIkel~~k~~al~~ei~~Lq---eEl~al~~krdeay~~i~~LR 301 (520)
.++...-.+|+.|-+++..++++|.... ..-+.|.++||.+..+|..|-
T Consensus 163 ~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~~i 214 (552)
T COG1256 163 AEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLI 214 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhhc
Confidence 3444444455555555556665555542 344667778888777776653
No 477
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=21.25 E-value=5.8e+02 Score=26.67 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 010022 286 VAEKRDKAFANI 297 (520)
Q Consensus 286 l~~krdeay~~i 297 (520)
+.++||.+..+|
T Consensus 196 L~DqRD~ll~~L 207 (322)
T TIGR02492 196 LLDQRDLLLKEL 207 (322)
T ss_pred hHHHHHHHHHHH
Confidence 344444443333
No 478
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.21 E-value=1.2e+03 Score=26.29 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=46.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
..+.+.+.+....+..++.++..+++.+.+++..+++....+.+-.+--..++.++.....+....+-....++.+
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqE 442 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQE 442 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666677777777666666666666666666666666666555555555555555543
No 479
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.20 E-value=6.5e+02 Score=24.77 Aligned_cols=19 Identities=16% Similarity=-0.113 Sum_probs=8.8
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 010022 302 KQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 302 kerde~n~~f~~~r~~~~k 320 (520)
+.+-....+|.+||+...+
T Consensus 53 d~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 53 DSFLRAKAETENVRRRAQE 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444455555554444
No 480
>PRK14158 heat shock protein GrpE; Provisional
Probab=21.16 E-value=7.4e+02 Score=24.58 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred eecCCCCCCcccCCCCccccCCCCCCCccccCCCCccccceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 38 IFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 38 ~fgs~~~~~~~~~~~~~~~~~~~~p~da~~~~~~~~~~~~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~a~i~ 117 (520)
..|||+. .+.-+..+..-+++.+|+.-..-.++. -..-..+..+|+.++.++..++....-+.+.+.
T Consensus 5 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~le~~l~~le~e~~el~d~~lR~~Aefe 71 (194)
T PRK14158 5 KHGSHQI-AEALKAKAAKEAEAAQGKPEAAQPVAA------------ADRIKELEEALAAKEAEAAANWDKYLRERADLE 71 (194)
T ss_pred cccchhh-HHHHHHhhcccccccCCCCCcCCCCCc------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh
Q 010022 118 AKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 118 ~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~ 159 (520)
..|.+-..=...+... +....+..-+.=++.|..+|.
T Consensus 72 N~RkR~~kE~e~~~~~-----a~~~~~~~lLpV~DnLerAl~ 108 (194)
T PRK14158 72 NYRKRVQKEKEELLKY-----GNESLILEILPAVDNMERALD 108 (194)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHhHHHHHHh
No 481
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.10 E-value=6.7e+02 Score=23.24 Aligned_cols=77 Identities=8% Similarity=0.153 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKR--GVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTN 165 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R--~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~n 165 (520)
...++.-+.|+..+.++......|.+.+..+. ...+=+.++.+.|..+...+...++..+.+-...-..+..|....
T Consensus 48 ~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~~~~ 126 (126)
T PF09403_consen 48 NEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQSLR 126 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 482
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.08 E-value=2.3e+02 Score=22.70 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE 288 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~ 288 (520)
+..++.++..+..++..+....+.++.++..|...-+.+..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
No 483
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.93 E-value=9e+02 Score=28.41 Aligned_cols=114 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhH----HHHHH
Q 010022 181 DLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGV----KKESQ 256 (520)
Q Consensus 181 ~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeL----Kkeld 256 (520)
..+.+|+..+..++-.|.. -|..+-.....+..+-..-+--+..+..-+.+-.+++.+...|+.+ ..++.
T Consensus 89 ~~l~~ld~ll~~~~~gls~------~L~~Ff~alq~la~~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~ 162 (676)
T PRK05683 89 GQISQLDKLLSDSTTGISP------ALQRFFTALQTAAANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLS 162 (676)
T ss_pred HHHHHHHhhcCCCCccHHH------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 010022 257 AVWAKISHLEGKVKALDEEIEALQQ---EVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 257 alr~kIkel~~k~~al~~ei~~Lqe---El~al~~krdeay~~i~~L 300 (520)
..-.+|+.+-+++..|+.+|..... .-+.|.++||.+..+|.+|
T Consensus 163 ~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~ 209 (676)
T PRK05683 163 AMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNEL 209 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhh
No 484
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=20.84 E-value=1.2e+03 Score=26.05 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHH
Q 010022 180 DDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVW 259 (520)
Q Consensus 180 D~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr 259 (520)
+..|+.|-+++....|...++----.| .+|...+..+.+ |-.+..+-+-..+-..+...|..+..+|..++.+++.++
T Consensus 229 E~~VN~Ls~rar~D~v~~Ae~ev~~Ae-~rl~~Ar~aL~~-fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~ 306 (434)
T PRK15178 229 EQHVNTVSARMQKERILWLENDVKSAQ-ENLGAARLELLK-IQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLM 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 010022 260 AKISHLEGKVKALDEEIEALQQEVNDVAEKR---------DKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 327 (520)
Q Consensus 260 ~kIkel~~k~~al~~ei~~LqeEl~al~~kr---------deay~~i~~LRkerde~n~~f~~~r~~~~karela~~ 327 (520)
..+..-.-++..++.+|..|..++.....+. ......-..|.-++.=....|--....+..||--|.+
T Consensus 307 ~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~R 383 (434)
T PRK15178 307 VNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALR 383 (434)
T ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.75 E-value=4.4e+02 Score=23.88 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 010022 234 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV---------AEKRDKAFANIKELRKQ 303 (520)
Q Consensus 234 ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al---------~~krdeay~~i~~LRke 303 (520)
+..+=+++..+...|..+-.++.+|+..+.++.+...+|+-+-..|.+.+..+ .....+-|.++..|+.+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~~~~~~g~~NL~~LY~E 81 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKKKKEGEGKDNLARLYQE 81 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHc
No 486
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=20.49 E-value=2.7e+02 Score=23.20 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGV 122 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~ 122 (520)
+.++.+|+.++.+|-.|-..|..+..++...+..
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.42 E-value=5e+02 Score=28.15 Aligned_cols=78 Identities=13% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHhhhhh--hhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 223 MRAKIQESMGK--KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 223 ~~aki~es~~~--ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~L 300 (520)
.++.|.++... +...++.+...-+++.+|+.--+.|+.-+++|.....+|.-+..+|+...+-++.+..++..+...|
T Consensus 207 irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~ 286 (365)
T KOG2391|consen 207 IRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENL 286 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccC
No 488
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=20.30 E-value=3.8e+02 Score=27.12 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLK 134 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr 134 (520)
+|.+-...++.++.+..+....+.+-++..-.+|++.++++..|.
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.26 E-value=8.4e+02 Score=24.03 Aligned_cols=168 Identities=14% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCC
Q 010022 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGI 172 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~ 172 (520)
..|..+..+|..++..-......+.....+-..|...|..+..+...++..+..-.+.--.|...-.+++.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~--------- 97 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKE--------- 97 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHH
Q 010022 173 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVK 252 (520)
Q Consensus 173 fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLK 252 (520)
++..|..|.| +=--+.....+|..-|..+..-|. .++++-....+-..--|.
T Consensus 98 ------~ek~l~~Lk~----------e~evL~qr~~kle~ErdeL~~kf~------------~~i~evqQk~~~kn~lLE 149 (201)
T PF13851_consen 98 ------LEKELKDLKW----------EHEVLEQRFEKLEQERDELYRKFE------------SAIQEVQQKTGLKNLLLE 149 (201)
T ss_pred ------HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 010022 253 KESQAVWAKISHLEGKVKALDEE-------IEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 253 keldalr~kIkel~~k~~al~~e-------i~~LqeEl~al~~krdeay~~i 297 (520)
+++..+...+.....++..+-.. +..+...++.+-...+..+..+
T Consensus 150 kKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN~~I~~L 201 (201)
T PF13851_consen 150 KKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKNQTIKDL 201 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhC
No 490
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.20 E-value=4.8e+02 Score=21.26 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~ 298 (520)
+..++.++..+..+++.+.+.++.+.........+...+....++.-...+
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK07248 hypothetical protein; Provisional
Probab=20.20 E-value=2.7e+02 Score=23.44 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGV 122 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~ 122 (520)
..++.+|+.++.+|-.|-..|..+..++...+..
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (87)
T PRK07248 4 EEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKA 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PRK14158 heat shock protein GrpE; Provisional
Probab=20.19 E-value=7.4e+02 Score=24.57 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010022 281 QEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 281 eEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
.+...+..+...+-..+..|++++-...++|.++|+...+ +.+.....-+++|+.-|
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k-----------E~e~~~~~a~~~~~~~l 96 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK-----------EKEELLKYGNESLILEI 96 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
No 493
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.15 E-value=1.3e+03 Score=26.21 Aligned_cols=200 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010022 153 PLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMG 232 (520)
Q Consensus 153 ~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~ 232 (520)
.|.+.|++|+..|.-.... +-+|...=..||.+|.-=-|.....--+|.=|..|+..-+.++. ++ -..|-
T Consensus 314 aLNEvL~kLk~tn~kQq~~----IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIe-----dK-Y~viL 383 (527)
T PF15066_consen 314 ALNEVLQKLKHTNRKQQNR----IQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIE-----DK-YRVIL 383 (527)
T ss_pred HHHHHHHHHHhhhHHHHHH----HHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----hH-hHhhh
Q ss_pred hhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 010022 233 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 233 ~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~ 312 (520)
++..+...+..+-.-+...++.+++-|..-..|.=++++++..|-.||+.....-.++++....--++-+-+..+-....
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeve 463 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVE 463 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHH
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhh
Q 010022 313 QYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQ 370 (520)
Q Consensus 313 ~~r~~~~karela~~~~v~el~~~~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R~ 370 (520)
.......++. -|..--..-|..--.+.--.|+++. .++-|+---.+..||
T Consensus 464 rLQ~lkgelE-kat~SALdlLkrEKe~~EqefLslq-------eEfQk~ekenl~ERq 513 (527)
T PF15066_consen 464 RLQQLKGELE-KATTSALDLLKREKETREQEFLSLQ-------EEFQKHEKENLEERQ 513 (527)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHH
No 494
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=20.12 E-value=8.4e+02 Score=23.99 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK-ELRKQRDEGNAYFF 312 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~-~LRkerde~n~~f~ 312 (520)
|-.+..++.+++....-.+-|+.+.+.|..++..+.....++...+. .+++........++
T Consensus 8 r~~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~ 69 (209)
T TIGR00309 8 RMELLKLKDKLKMAKRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQS 69 (209)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=20.05 E-value=7.1e+02 Score=23.09 Aligned_cols=84 Identities=11% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010022 236 DIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 315 (520)
Q Consensus 236 ~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r 315 (520)
.+..+++.+..++..|-++=++..++.+...+...+--.++..++..+.+...+.... ...+-.++++..+-+.|-.++
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD-SKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 010022 316 ALLNE 320 (520)
Q Consensus 316 ~~~~k 320 (520)
..+.+
T Consensus 103 ~~L~k 107 (126)
T PF09403_consen 103 NKLDK 107 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
No 496
>PRK14148 heat shock protein GrpE; Provisional
Probab=20.02 E-value=3.8e+02 Score=26.64 Aligned_cols=50 Identities=6% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 010022 278 ALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 327 (520)
Q Consensus 278 ~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~ 327 (520)
.+..++..+......+-.++..|+..+-...++|.++|+...+-++-+..
T Consensus 37 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~ 86 (195)
T PRK14148 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARK 86 (195)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!