Query 010022
Match_columns 520
No_of_seqs 147 out of 186
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.0 0.0092 3.1E-07 55.7 34.6 69 89-157 2-70 (284)
2 1c1g_A Tropomyosin; contractIl 98.0 0.013 4.3E-07 54.8 33.5 38 93-130 20-57 (284)
3 3na7_A HP0958; flagellar bioge 97.7 0.015 5.2E-07 57.1 24.5 89 115-215 19-107 (256)
4 3na7_A HP0958; flagellar bioge 97.5 0.011 3.8E-07 58.2 21.1 93 94-188 12-104 (256)
5 1i84_S Smooth muscle myosin he 97.0 0.00012 4E-09 86.4 0.0 39 92-130 912-950 (1184)
6 1i84_S Smooth muscle myosin he 96.8 0.0023 7.8E-08 75.5 9.1 41 91-131 862-902 (1184)
7 2dfs_A Myosin-5A; myosin-V, in 94.0 10 0.00034 44.6 25.1 113 177-309 924-1044(1080)
8 2dfs_A Myosin-5A; myosin-V, in 93.6 2.1 7.3E-05 50.2 18.6 27 174-200 914-940 (1080)
9 3q8t_A Beclin-1; autophagy, AT 92.8 2.1 7.1E-05 36.3 12.6 78 198-302 18-95 (96)
10 3vkg_A Dynein heavy chain, cyt 90.1 30 0.001 45.3 24.2 58 248-305 2030-2087(3245)
11 3u59_A Tropomyosin beta chain; 89.8 7.4 0.00025 32.9 13.1 62 248-309 4-65 (101)
12 3vkg_A Dynein heavy chain, cyt 89.3 25 0.00084 46.0 22.6 57 243-299 2011-2067(3245)
13 2jee_A YIIU; FTSZ, septum, coi 88.5 3.1 0.00011 34.5 9.3 58 89-146 9-73 (81)
14 1ic2_A Tropomyosin alpha chain 86.9 9.5 0.00032 31.0 11.4 59 251-309 4-62 (81)
15 3ghg_A Fibrinogen alpha chain; 86.7 3.6 0.00012 44.6 11.0 33 90-125 50-82 (562)
16 3hnw_A Uncharacterized protein 86.4 4.6 0.00016 36.4 10.1 59 251-309 73-131 (138)
17 2eqb_B RAB guanine nucleotide 86.4 3.9 0.00013 35.0 9.0 60 254-313 6-65 (97)
18 3bas_A Myosin heavy chain, str 85.6 9.1 0.00031 31.8 10.8 69 241-309 16-84 (89)
19 3ol1_A Vimentin; structural ge 85.1 17 0.00059 31.6 13.0 30 275-304 70-99 (119)
20 2jee_A YIIU; FTSZ, septum, coi 84.5 8.2 0.00028 31.9 9.8 51 252-302 26-76 (81)
21 3u1c_A Tropomyosin alpha-1 cha 84.1 18 0.00063 30.6 13.0 21 272-292 42-62 (101)
22 3a7p_A Autophagy protein 16; c 81.6 18 0.00061 33.2 11.8 68 247-314 69-136 (152)
23 1ic2_A Tropomyosin alpha chain 80.9 16 0.00055 29.6 10.3 51 251-301 18-68 (81)
24 3hnw_A Uncharacterized protein 80.0 13 0.00043 33.5 10.2 54 250-303 79-132 (138)
25 3u1c_A Tropomyosin alpha-1 cha 80.0 26 0.0009 29.6 13.6 57 249-305 5-61 (101)
26 3i00_A HIP-I, huntingtin-inter 79.4 16 0.00054 32.2 10.4 70 232-307 11-80 (120)
27 2ocy_A RAB guanine nucleotide 78.0 21 0.00071 32.9 11.1 53 261-313 45-97 (154)
28 1l8d_A DNA double-strand break 77.3 18 0.00061 30.4 10.0 22 281-302 71-92 (112)
29 1jcd_A Major outer membrane li 76.3 12 0.00039 28.6 7.4 43 256-298 7-49 (52)
30 4etp_A Kinesin-like protein KA 75.8 8.1 0.00028 40.4 8.8 57 246-302 3-59 (403)
31 3u06_A Protein claret segregat 74.9 7.9 0.00027 40.6 8.5 58 245-302 2-59 (412)
32 3ol1_A Vimentin; structural ge 74.3 43 0.0015 29.1 14.9 15 202-216 17-31 (119)
33 3ghg_A Fibrinogen alpha chain; 73.7 44 0.0015 36.3 13.8 44 264-307 114-157 (562)
34 1deq_A Fibrinogen (alpha chain 73.4 25 0.00085 36.7 11.5 30 89-118 63-92 (390)
35 1l8d_A DNA double-strand break 73.0 41 0.0014 28.2 11.2 15 292-306 75-89 (112)
36 3u59_A Tropomyosin beta chain; 72.7 42 0.0014 28.2 13.0 49 255-303 25-73 (101)
37 2fxo_A Myosin heavy chain, car 70.9 53 0.0018 28.7 15.9 44 264-307 80-123 (129)
38 3swk_A Vimentin; cytoskeleton, 70.7 24 0.00081 29.1 8.8 34 271-304 46-79 (86)
39 2v4h_A NF-kappa-B essential mo 69.8 40 0.0014 29.3 10.2 64 254-321 25-88 (110)
40 2efr_A General control protein 69.2 69 0.0024 29.3 18.5 11 308-318 139-149 (155)
41 1wle_A Seryl-tRNA synthetase; 69.0 28 0.00095 37.5 11.2 29 276-304 118-146 (501)
42 2v4h_A NF-kappa-B essential mo 68.1 61 0.0021 28.2 11.6 56 89-148 27-82 (110)
43 2dq0_A Seryl-tRNA synthetase; 67.5 21 0.00071 37.9 9.8 31 276-306 71-101 (455)
44 2efr_A General control protein 66.6 78 0.0027 29.0 16.4 78 235-312 73-150 (155)
45 3a7p_A Autophagy protein 16; c 65.6 39 0.0013 31.0 9.8 8 179-186 40-47 (152)
46 3cvf_A Homer-3, homer protein 65.2 42 0.0014 27.6 9.0 66 255-320 8-73 (79)
47 1m1j_A Fibrinogen alpha subuni 64.8 49 0.0017 35.4 11.7 18 89-106 61-78 (491)
48 3mq9_A Bone marrow stromal ant 63.7 1.4E+02 0.0047 30.8 15.3 67 251-320 402-468 (471)
49 1jcd_A Major outer membrane li 61.8 29 0.001 26.3 6.9 44 248-291 6-49 (52)
50 2dq0_A Seryl-tRNA synthetase; 61.7 29 0.00099 36.8 9.6 60 201-277 41-100 (455)
51 4e61_A Protein BIM1; EB1-like 61.2 31 0.0011 29.8 7.9 34 267-300 18-51 (106)
52 3o0z_A RHO-associated protein 60.8 1.1E+02 0.0037 28.5 15.4 41 263-303 93-133 (168)
53 2zqm_A Prefoldin beta subunit 59.4 77 0.0026 26.4 11.6 10 204-213 12-21 (117)
54 3swk_A Vimentin; cytoskeleton, 59.3 73 0.0025 26.2 11.5 58 249-306 3-60 (86)
55 2lw1_A ABC transporter ATP-bin 59.3 35 0.0012 28.0 7.7 55 248-302 24-84 (89)
56 2q6q_A Spindle POLE BODY compo 58.5 22 0.00074 28.6 5.9 22 291-312 48-69 (74)
57 3qne_A Seryl-tRNA synthetase, 58.2 36 0.0012 36.6 9.6 19 201-219 43-61 (485)
58 3cve_A Homer protein homolog 1 57.0 76 0.0026 25.6 10.5 63 92-161 6-68 (72)
59 3tnu_A Keratin, type I cytoske 56.2 1E+02 0.0035 26.9 11.8 11 248-258 40-50 (131)
60 3cvf_A Homer-3, homer protein 56.1 83 0.0028 25.8 10.0 62 93-161 13-74 (79)
61 3jsv_C NF-kappa-B essential mo 55.0 48 0.0016 28.1 7.8 23 281-303 61-83 (94)
62 1wle_A Seryl-tRNA synthetase; 54.9 59 0.002 35.0 10.6 8 347-354 174-181 (501)
63 1m1j_B Fibrinogen beta chain; 54.2 1.8E+02 0.0063 31.0 14.1 59 91-149 98-156 (464)
64 3q8t_A Beclin-1; autophagy, AT 54.1 97 0.0033 25.9 12.7 59 245-303 10-68 (96)
65 1fxk_A Prefoldin; archaeal pro 53.7 92 0.0031 25.6 11.0 8 297-304 88-95 (107)
66 1x8y_A Lamin A/C; structural p 52.5 86 0.003 25.6 9.0 21 248-268 5-25 (86)
67 1m1j_B Fibrinogen beta chain; 52.5 88 0.003 33.4 11.3 7 278-284 172-178 (464)
68 3qne_A Seryl-tRNA synthetase, 51.8 26 0.00088 37.7 7.1 27 278-304 75-101 (485)
69 4gkw_A Spindle assembly abnorm 51.0 1.4E+02 0.0048 26.9 18.9 36 248-283 121-156 (167)
70 2p22_C Protein SRN2; endosome, 50.7 1.6E+02 0.0056 27.6 14.4 19 340-361 159-177 (192)
71 3lay_A Zinc resistance-associa 50.6 1.2E+02 0.0043 28.0 10.8 41 271-311 89-136 (175)
72 2zqm_A Prefoldin beta subunit 49.9 1.1E+02 0.0038 25.4 11.2 36 277-312 73-108 (117)
73 3cve_A Homer protein homolog 1 49.7 1E+02 0.0034 24.9 10.8 61 260-320 7-67 (72)
74 1ses_A Seryl-tRNA synthetase; 49.7 30 0.001 36.2 7.2 30 276-305 66-95 (421)
75 1wt6_A Myotonin-protein kinase 48.7 1.1E+02 0.0039 25.2 9.3 55 95-153 16-70 (81)
76 2v71_A Nuclear distribution pr 47.9 1.8E+02 0.0063 27.4 19.9 65 243-307 92-156 (189)
77 2e7s_A RAB guanine nucleotide 45.8 63 0.0021 29.1 7.6 53 261-313 33-85 (135)
78 3jsv_C NF-kappa-B essential mo 45.6 1.4E+02 0.0047 25.3 11.0 73 89-161 5-80 (94)
79 2eqb_B RAB guanine nucleotide 44.8 1.4E+02 0.005 25.3 12.7 65 245-309 4-69 (97)
80 3oja_A Leucine-rich immune mol 44.8 2.8E+02 0.0095 28.6 16.2 14 200-213 323-336 (487)
81 2js5_A Uncharacterized protein 44.3 47 0.0016 26.8 5.8 61 246-306 3-63 (71)
82 2w83_C C-JUN-amino-terminal ki 44.2 1.3E+02 0.0044 24.6 8.8 45 101-145 10-54 (77)
83 2dq3_A Seryl-tRNA synthetase; 44.2 25 0.00086 36.8 5.5 9 251-259 49-57 (425)
84 4emc_A Monopolin complex subun 43.6 1E+02 0.0034 29.3 8.9 70 89-158 9-78 (190)
85 1gk4_A Vimentin; intermediate 43.4 1.3E+02 0.0044 24.3 11.6 22 248-269 3-24 (84)
86 2yy0_A C-MYC-binding protein; 42.8 30 0.001 26.1 4.3 29 246-274 19-47 (53)
87 2dq3_A Seryl-tRNA synthetase; 42.6 32 0.0011 36.0 6.0 62 200-278 39-100 (425)
88 4e61_A Protein BIM1; EB1-like 42.6 82 0.0028 27.2 7.5 45 89-133 7-51 (106)
89 3lay_A Zinc resistance-associa 42.5 74 0.0025 29.6 7.9 45 115-159 86-130 (175)
90 3rmi_A Chorismate mutase prote 42.2 1.6E+02 0.0056 25.1 10.3 77 267-343 12-90 (114)
91 3lss_A Seryl-tRNA synthetase; 42.0 66 0.0022 34.5 8.4 21 201-221 47-67 (484)
92 2l5g_B Putative uncharacterize 40.7 29 0.001 25.3 3.7 31 237-267 7-37 (42)
93 3nmd_A CGMP dependent protein 39.4 48 0.0016 26.8 5.2 18 266-283 46-63 (72)
94 2d4y_A HAP1, flagellar HOOK-as 39.2 2.5E+02 0.0085 29.2 12.3 64 248-314 80-148 (463)
95 1ses_A Seryl-tRNA synthetase; 38.3 63 0.0022 33.8 7.5 26 92-117 34-59 (421)
96 4fla_A Regulation of nuclear P 37.5 2.3E+02 0.008 25.6 11.2 123 77-220 13-146 (152)
97 1m1j_C Fibrinogen gamma chain; 37.0 2.8E+02 0.0097 29.0 12.1 88 179-286 36-131 (409)
98 1ik9_A DNA repair protein XRCC 36.8 2E+02 0.0069 27.4 10.1 78 81-158 111-198 (213)
99 4dnd_A Syntaxin-10, SYN10; str 36.5 2.2E+02 0.0076 25.0 9.9 26 77-108 28-53 (130)
100 4gkw_A Spindle assembly abnorm 36.3 2.4E+02 0.0082 25.4 13.0 10 317-326 96-105 (167)
101 1fxk_A Prefoldin; archaeal pro 35.6 1.8E+02 0.0061 23.7 11.1 30 275-304 73-102 (107)
102 3iox_A AGI/II, PA; alpha helix 35.6 4.5E+02 0.015 28.3 16.4 35 337-390 95-129 (497)
103 3qh9_A Liprin-beta-2; coiled-c 35.4 1.8E+02 0.0062 23.9 8.1 51 247-297 27-77 (81)
104 4h22_A Leucine-rich repeat fli 34.5 1.9E+02 0.0064 24.9 8.4 38 266-303 43-80 (103)
105 3csx_A Putative uncharacterize 34.4 82 0.0028 26.0 5.9 62 246-307 15-76 (81)
106 4emc_A Monopolin complex subun 34.2 1.4E+02 0.0049 28.2 8.3 23 268-290 35-57 (190)
107 3haj_A Human pacsin2 F-BAR; pa 33.5 4.4E+02 0.015 27.5 18.6 32 290-321 187-218 (486)
108 3nmd_A CGMP dependent protein 33.5 1.8E+02 0.0061 23.5 7.6 15 292-306 51-65 (72)
109 3o0z_A RHO-associated protein 33.2 3E+02 0.01 25.5 19.7 40 93-132 6-45 (168)
110 1ez3_A Syntaxin-1A; three heli 33.0 2.2E+02 0.0074 23.9 9.1 9 353-361 117-125 (127)
111 1gqe_A Release factor 2, RF2; 32.6 3.7E+02 0.013 27.7 12.0 39 310-348 72-110 (365)
112 1ecm_A Endo-oxabicyclic transi 31.1 2.3E+02 0.0078 23.6 9.3 72 269-340 7-80 (109)
113 2fxo_A Myosin heavy chain, car 30.7 2.6E+02 0.009 24.2 17.6 6 252-257 54-59 (129)
114 1gqe_A Release factor 2, RF2; 30.5 4.1E+02 0.014 27.4 11.9 44 173-216 24-69 (365)
115 1wt6_A Myotonin-protein kinase 30.4 1.2E+02 0.0041 25.0 6.2 37 270-306 34-70 (81)
116 2v71_A Nuclear distribution pr 30.2 3.5E+02 0.012 25.4 18.7 27 276-302 90-116 (189)
117 2lw1_A ABC transporter ATP-bin 30.1 2.2E+02 0.0075 23.0 8.1 54 252-312 21-80 (89)
118 3m91_A Proteasome-associated A 29.9 1.8E+02 0.006 21.9 7.1 19 286-304 28-46 (51)
119 3m91_A Proteasome-associated A 29.8 1.6E+02 0.0054 22.2 6.4 37 250-286 13-49 (51)
120 3lss_A Seryl-tRNA synthetase; 29.4 2E+02 0.0069 30.7 9.7 15 248-262 53-67 (484)
121 1gd2_E Transcription factor PA 29.1 95 0.0033 24.7 5.4 24 264-287 33-56 (70)
122 4etp_A Kinesin-like protein KA 29.1 1.4E+02 0.0047 31.0 8.2 36 254-289 4-39 (403)
123 1lwu_C Fibrinogen gamma chain; 29.0 1.4E+02 0.0048 30.4 7.9 37 264-300 16-52 (323)
124 3oja_A Leucine-rich immune mol 28.5 5E+02 0.017 26.6 13.6 39 273-311 434-472 (487)
125 1go4_E MAD1 (mitotic arrest de 28.5 1.7E+02 0.006 24.9 7.2 31 240-270 13-43 (100)
126 2d8d_A Aroag, phospho-2-dehydr 28.3 2.3E+02 0.0079 22.7 8.2 37 269-305 5-41 (90)
127 2ke4_A CDC42-interacting prote 28.3 2.3E+02 0.008 23.8 8.0 57 90-146 19-87 (98)
128 1cii_A Colicin IA; bacteriocin 28.3 5.5E+02 0.019 27.6 12.3 51 257-307 353-403 (602)
129 3kyp_A Pfnaps, nucleosome asse 28.2 1.3E+02 0.0044 28.1 7.1 42 276-320 5-46 (193)
130 2yy0_A C-MYC-binding protein; 28.1 1E+02 0.0034 23.2 5.1 20 247-266 27-46 (53)
131 3bas_A Myosin heavy chain, str 27.8 2.5E+02 0.0085 22.9 11.4 30 264-293 25-54 (89)
132 3a7o_A Autophagy protein 16; c 27.3 2.4E+02 0.0084 22.7 7.3 48 240-287 19-66 (75)
133 3mov_A Lamin-B1; LMNB1, B-type 26.9 2.8E+02 0.0094 23.2 8.5 19 271-289 41-59 (95)
134 1cii_A Colicin IA; bacteriocin 26.3 6.4E+02 0.022 27.2 15.0 65 247-311 336-400 (602)
135 2oto_A M protein; helical coil 25.9 3.5E+02 0.012 24.0 12.5 75 249-323 25-103 (155)
136 2no2_A HIP-I, huntingtin-inter 25.7 3.1E+02 0.011 23.3 12.2 86 208-293 15-101 (107)
137 2gtv_X CM, chorismate mutase; 25.5 2.9E+02 0.01 23.3 8.2 75 270-344 6-90 (104)
138 4h22_A Leucine-rich repeat fli 25.3 3.2E+02 0.011 23.4 9.0 28 258-285 28-55 (103)
139 3q0x_A Centriole protein; cent 25.0 2.3E+02 0.0078 27.5 8.3 37 265-308 183-219 (228)
140 3ret_A Salicylate biosynthesis 24.6 2.6E+02 0.0087 23.1 7.6 76 269-345 10-87 (101)
141 1ci6_A Transcription factor AT 24.6 2.4E+02 0.0082 21.6 7.0 27 260-286 30-56 (63)
142 1lq7_A Alpha3W; three helix bu 24.6 1.2E+02 0.0043 23.1 5.0 49 235-283 12-64 (67)
143 3mq9_A Bone marrow stromal ant 24.4 5.8E+02 0.02 26.0 13.2 84 175-275 349-433 (471)
144 2v66_B Nuclear distribution pr 24.3 3.5E+02 0.012 23.4 12.3 38 273-314 34-71 (111)
145 3d5a_X RF1, peptide chain rele 24.1 4.6E+02 0.016 26.9 10.8 42 176-217 5-48 (354)
146 3sjb_C Golgi to ER traffic pro 24.1 1.4E+02 0.0049 25.1 5.8 67 76-144 8-79 (93)
147 2q6q_A Spindle POLE BODY compo 24.1 2.8E+02 0.0095 22.2 8.2 59 234-292 5-63 (74)
148 2efk_A CDC42-interacting prote 23.6 4.7E+02 0.016 24.7 20.8 23 301-323 178-200 (301)
149 3a7o_A Autophagy protein 16; c 23.6 2.9E+02 0.0099 22.2 7.7 50 249-298 21-70 (75)
150 1t2k_D Cyclic-AMP-dependent tr 23.6 2.2E+02 0.0077 21.4 6.5 16 269-284 38-53 (61)
151 1x79_B RAB GTPase binding effe 23.4 3.6E+02 0.012 23.3 10.7 32 276-307 72-103 (112)
152 2xnx_M M protein, M1-BC1; cell 23.4 2.2E+02 0.0075 25.9 7.2 46 244-289 64-109 (146)
153 3gp4_A Transcriptional regulat 23.1 3.8E+02 0.013 23.4 9.8 9 203-211 48-56 (142)
154 2v0o_A FCHO2, FCH domain only 23.0 4.6E+02 0.016 24.4 17.6 28 183-210 20-47 (276)
155 2p22_A Suppressor protein STP2 22.2 4.7E+02 0.016 24.2 14.8 118 89-210 8-155 (174)
156 3tnu_B Keratin, type II cytosk 21.9 3.8E+02 0.013 23.0 11.3 39 248-286 31-69 (129)
157 3tul_A Cell invasion protein S 21.4 3E+02 0.01 25.2 7.6 13 175-187 21-33 (158)
158 4dzn_A Coiled-coil peptide CC- 21.3 1.7E+02 0.0058 19.6 4.5 6 251-256 14-19 (33)
159 1ci6_A Transcription factor AT 21.2 2.5E+02 0.0087 21.5 6.4 39 120-158 22-60 (63)
160 3efg_A Protein SLYX homolog; x 21.2 2.7E+02 0.0094 22.4 6.8 50 251-300 12-61 (78)
161 1ez3_A Syntaxin-1A; three heli 21.1 3.6E+02 0.012 22.4 15.0 61 250-313 47-113 (127)
162 2wt7_A Proto-oncogene protein 20.6 2.6E+02 0.0088 21.3 6.3 37 252-288 22-58 (63)
163 2odv_A Plectin 1, HD1; plakin 20.3 5.7E+02 0.019 24.4 19.4 122 173-303 92-219 (235)
164 2l5g_B Putative uncharacterize 20.3 1.9E+02 0.0065 21.0 4.9 7 276-282 25-31 (42)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.03 E-value=0.0092 Score=55.72 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQA 157 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~ 157 (520)
+.|+.++..+..++..+......+...+..+......+...+..+......++..+......+..++..
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEK 70 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777777777777766666666666666666555555555444444444444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.95 E-value=0.013 Score=54.80 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010022 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQL 130 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qL 130 (520)
..++.+...+..+......+...+.........+...+
T Consensus 20 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (284)
T 1c1g_A 20 DRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.67 E-value=0.015 Score=57.15 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCC
Q 010022 115 ELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEI 194 (520)
Q Consensus 115 ~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgS 194 (520)
.|..++..+..+-.+|..|..+..+++..+.....+++.+...+.++.. .++++..+|...+.++.+++
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~-----------~i~~~~~ri~~~~~~l~~v~ 87 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQ-----------TLQDTNAKIASIQKKMSEIK 87 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHccC
Confidence 4444444555555555555555555555555555555555555544321 24556666666666666555
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 010022 195 IPLSEEKQILREIKQLEGTRE 215 (520)
Q Consensus 195 LsL~EEKklLkEIsqL~k~Rk 215 (520)
+-.|=.-+-+||..++....
T Consensus 88 -~~kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 88 -SERELRSLNIEEDIAKERSN 107 (256)
T ss_dssp -SSSHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHH
Confidence 33444445556665554443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.52 E-value=0.011 Score=58.17 Aligned_cols=93 Identities=10% Similarity=0.039 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhhhhhhccccCCCC
Q 010022 94 KIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGIC 173 (520)
Q Consensus 94 kI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~klre~nnArs~~~f 173 (520)
.|+.++.+|..+...+..+-..+..+......+..++..+......+...+...-.+|..+...+.+.+...+. ....
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~--v~~~ 89 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE--IKSE 89 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCH
Confidence 45666677777777777777777777777778888887777777777777777777777777777655433321 1233
Q ss_pred CCHHHHHHHHHHHHH
Q 010022 174 SSEEELDDLIRSLQY 188 (520)
Q Consensus 174 kSveEID~rI~~LE~ 188 (520)
+-...|.++|..++.
T Consensus 90 kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 90 RELRSLNIEEDIAKE 104 (256)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555554
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.97 E-value=0.00012 Score=86.37 Aligned_cols=39 Identities=8% Similarity=-0.017 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010022 92 RAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQL 130 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qL 130 (520)
...+..+..++..+......+...+........++..++
T Consensus 912 e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~ 950 (1184)
T 1i84_S 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333333333
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.81 E-value=0.0023 Score=75.48 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLR 131 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk 131 (520)
++.++..++..+..+...+..+...+..+..+...+..++.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444444444443
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.95 E-value=10 Score=44.60 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcC---CCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccch
Q 010022 177 EELDDLIRSLQYRIQHE---IIPLSEE-----KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDL 248 (520)
Q Consensus 177 eEID~rI~~LE~~Iqhg---SLsL~EE-----KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eI 248 (520)
..+...|..|+++++.. ...|.++ ..+..|++.|++....+.. ...+.....++++.+..++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~----------~~~e~~~~~~~v~~L~~e~ 993 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM----------SEEEAKNATNRVLSLQEEI 993 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 45666666666666542 2223332 3466677777666554322 1112223333444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
+.+++++..+. +..+.+...+..++++ +.++...+-+....|+.+.++++.
T Consensus 994 ~~l~~~~~~~~-------ke~~~lee~~~~~~~~---L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 994 AKLRKELHQTQ-------TEKKTIEEWADKYKHE---TEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 3333333333333322 224444444444455555555543
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.59 E-value=2.1 Score=50.21 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCChHHH
Q 010022 174 SSEEELDDLIRSLQYRIQHEIIPLSEE 200 (520)
Q Consensus 174 kSveEID~rI~~LE~~IqhgSLsL~EE 200 (520)
.+++.+......||..|..=+..|.++
T Consensus 914 r~~~~l~~~~~~LE~kl~eLq~rL~~~ 940 (1080)
T 2dfs_A 914 RSVERYKKLHIGLENKIMQLQRKIDEQ 940 (1080)
T ss_dssp ---------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888887777766654
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=92.78 E-value=2.1 Score=36.32 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 198 SEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE 277 (520)
Q Consensus 198 ~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~ 277 (520)
.+|..++.++..|++.+..+-. +|..+..+...+...=...-..+.+..-++-
T Consensus 18 ~eE~~L~~eL~~lEke~~~l~~---------------------------el~~le~E~~~L~~eE~~~w~eyn~~~~ql~ 70 (96)
T 3q8t_A 18 LEEERLIQELEDVEKNRKVVAE---------------------------NLEKVQAEAERLDQEEAQYQREYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH---------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4788899999998888876421 1222333333332221222233555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 278 ALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 278 ~LqeEl~al~~krdeay~~i~~LRk 302 (520)
.++++++++..+.+-+-..+..|++
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777777777777777667766664
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.09 E-value=30 Score=45.26 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
|..++.++.++..+|..+++++++...+...|+.+.+.+..+.+.|-.=+..|-.++.
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3344444444444444444444444445555555555555555555555555555544
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.82 E-value=7.4 Score=32.92 Aligned_cols=62 Identities=8% Similarity=0.167 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
++.||++++.++-......++...+..++..+......+-.....+-.++..|..+++....
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444444444444444444444444444444444444444444333
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.32 E-value=25 Score=46.01 Aligned_cols=57 Identities=9% Similarity=0.233 Sum_probs=26.9
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 243 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 299 (520)
Q Consensus 243 ~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~ 299 (520)
.++.++..+..++...+.++.++++.+..+.+++..|+++++++..+.+.+-.+...
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544444444444444444444544444444444444444333
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.55 E-value=3.1 Score=34.49 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHH
Q 010022 89 PKIRAKIDLTDR-------EIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDD 146 (520)
Q Consensus 89 ~~lkakI~~a~k-------eI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~ 146 (520)
+.+.++|+.|-. +|..|++....+..+...+++.|..|..+...|++++..+...+..
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555 7777777777777777777777777877777777777666655433
No 14
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.91 E-value=9.5 Score=30.98 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
|+++++.++.......+++..+...+.........+-.....+-.+|..|-.+++....
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333333333333333333333333333333333333333
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.73 E-value=3.6 Score=44.56 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGD 125 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~e 125 (520)
.|+--|+..+. .++...+.|++.+......+..
T Consensus 50 rLQglLdkqEr---DltkrINELKnqLEdlsKnsKd 82 (562)
T 3ghg_A 50 RMKGLIDEVNQ---DFTNRINKLKNSLFEYQKNNKD 82 (562)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHTHHHHHHHH
T ss_pred chhhhHHhhcC---cHHHHHHHHHHHHHHHHhhchh
Confidence 34444444444 2223334444444443333333
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.36 E-value=4.6 Score=36.39 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
++.+.+.+...+..+.+.+..++.++.+++.+++.+..+..++-.+++.|..+.-++..
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555666666666666666666666666666666666655555443
No 17
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.35 E-value=3.9 Score=34.97 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
+++.++..|..+...+..++.++..|+.++..-...|..+-.....+..+..++...+|.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556667788888899999999999999999999999999999998886
No 18
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.57 E-value=9.1 Score=31.76 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=49.8
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 010022 241 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 309 (520)
Q Consensus 241 iK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~ 309 (520)
+..+..+|..++..+.......+++..++..+-.+.+.|+.++..+-..+..+......|-.+..+++.
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777777777788888888888888888888777777776666666666666665544
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.14 E-value=17 Score=31.60 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 275 EIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 275 ei~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
++..|.+.++.++-.|-.+-.++..|+.++
T Consensus 70 di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 70 TLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.50 E-value=8.2 Score=31.94 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
+-++++++.+...+......+......|..+...++.++..--..|+.|-.
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333333344444444444444444444444444444444433
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.10 E-value=18 Score=30.57 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010022 272 LDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 272 l~~ei~~LqeEl~al~~krde 292 (520)
...++.+|+..+..+-...+.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 22
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.63 E-value=18 Score=33.22 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=51.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~ 314 (520)
.|..|+.++..++.+|..+...+..-.+.+..|++++.+++-+-+.+-.++..|.++-+.+-.-|-.+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777888888888777777778888888777776655544
No 23
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.89 E-value=16 Score=29.59 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 301 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LR 301 (520)
.....+.+..+++...........++.+|+..+..+-...+.+-..+...-
T Consensus 18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 18 ALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444334444444444444444444444444433333
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.01 E-value=13 Score=33.48 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 250 eLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
.+..++..+...|..+...+-..+.++..+..++..+..+.+.+-.++..|-.+
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444444444444444444433
No 25
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.99 E-value=26 Score=29.58 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
+.||++++.++.......++.+.+...+..+......+-.....+-.++.-|-.++|
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333333333333333333333333333333333333
No 26
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.40 E-value=16 Score=32.23 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=51.7
Q ss_pred hhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 232 GKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 232 ~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
+.++.+++.++ .+|+.|+.+++.+.. +....+..+...++.|..++..-...++.+......||.+...+
T Consensus 11 d~rD~~Ie~Lk---reie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 11 DEKDHLIERLY---REISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CTHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544433 356666666666533 45566778899999999999999999999999999999887754
No 27
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.97 E-value=21 Score=32.85 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 261 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 261 kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
.+..+......+..++..|+.++..-...|-.+-.....+..+.+++...+|.
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556778889999999999999999999999999999999998886
No 28
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=77.33 E-value=18 Score=30.45 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010022 281 QEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 281 eEl~al~~krdeay~~i~~LRk 302 (520)
.++..+......+...+..|..
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 29
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.35 E-value=12 Score=28.56 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 256 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 256 dalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~ 298 (520)
+.|..++..|..+++.|+.+++.|..+...++++=..+...|.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444555555555555555555555444444443
No 30
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.77 E-value=8.1 Score=40.37 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=48.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
.+|+.++.++..++.++.++...+..+..++..+.+++..-...|..+++.+.+|+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 357778888888888888888889999999999999999999999999999999874
No 31
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.93 E-value=7.9 Score=40.64 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=49.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
+.+-++|..++..++.++.++..++..+..++..+.+++......|..+++.+.+|+.
T Consensus 2 ~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456778888888888888888889999999999999999999999999999998875
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.26 E-value=43 Score=29.05 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010022 202 QILREIKQLEGTREK 216 (520)
Q Consensus 202 klLkEIsqL~k~Rk~ 216 (520)
.+-.+|..|+++...
T Consensus 17 ~ye~~I~~LR~qid~ 31 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQ 31 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666443
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.69 E-value=44 Score=36.29 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
+|+..+..|+.+|+..-..+..|.......+.+|+.|-..+|.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555555555555555555554443
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.42 E-value=25 Score=36.69 Aligned_cols=30 Identities=3% Similarity=0.016 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRA 118 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~ 118 (520)
-.|+..|+.|...+..+.+.-..+...+..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~ 92 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKN 92 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345556666666655555444444433333
No 35
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=73.01 E-value=41 Score=28.19 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHh
Q 010022 292 KAFANIKELRKQRDE 306 (520)
Q Consensus 292 eay~~i~~LRkerde 306 (520)
.+...+..|+.+...
T Consensus 75 ~l~~~i~~l~~~i~~ 89 (112)
T 1l8d_A 75 NSKNTLAKLIDRKSE 89 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 36
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.66 E-value=42 Score=28.18 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
.+.+..+++.+......+..++.+|+..+..+-...+.+...+..+...
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444333
No 37
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=70.94 E-value=53 Score=28.70 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
+|..++..+...+....+....+...+..+-..+..|+++.+..
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555556666666655543
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=70.67 E-value=24 Score=29.15 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 271 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 271 al~~ei~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
.+..++..|...++.++-.|-.+-.++..|..++
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555443
No 39
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=69.79 E-value=40 Score=29.32 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010022 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~ka 321 (520)
+++.|..++...++.+.+.+.+++.|..++.. +++..+.+.-|+.|.+--..+|..-|.+.-++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aERadREkl 88 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAERHAREKL 88 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Confidence 44455555555556666666667777665544 56666789999999998888999888776663
No 40
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=69.22 E-value=69 Score=29.32 Aligned_cols=11 Identities=0% Similarity=-0.049 Sum_probs=4.9
Q ss_pred hHHHHHHHHHH
Q 010022 308 NAYFFQYRALL 318 (520)
Q Consensus 308 n~~f~~~r~~~ 318 (520)
...||..-..+
T Consensus 139 ~~~~~~~~~~~ 149 (155)
T 2efr_A 139 LSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred ccchHHHHHHH
Confidence 44455444333
No 41
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=68.98 E-value=28 Score=37.51 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
...|..+...+.++...+...+.++..++
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444444444
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.07 E-value=61 Score=28.21 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKR 148 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~ 148 (520)
+.|+..+..+++.+...+...+.+...+.. +.+-.+++.-|++|..-|+.-+..-+
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aER 82 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAER 82 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccch
Confidence 789999999999999988888877777665 33444566666666665554444433
No 43
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=67.53 E-value=21 Score=37.90 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
...|..+...+.++...+-..+.++..+++.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443
No 44
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=66.65 E-value=78 Score=28.97 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=43.3
Q ss_pred hhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 010022 235 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 235 e~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~ 312 (520)
+.+.++|+.+...+.+.-......--.+..|...++.+.+++..-......+...-+..+..+..+...++.+++..-
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 335555655544444444444444444445555555555555555555555666666666666666666666666543
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=65.59 E-value=39 Score=30.95 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 010022 179 LDDLIRSL 186 (520)
Q Consensus 179 ID~rI~~L 186 (520)
|+.+...|
T Consensus 40 ~E~~~~~l 47 (152)
T 3a7p_A 40 KEAHLNEL 47 (152)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 46
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=65.20 E-value=42 Score=27.56 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 255 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 255 ldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
.+.+..++.+++.....+...+..|+..+.....+++.+..++..|-..+|-+-.++...|.-+.+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334445566666666677777778888888888888887777777777777777766666666554
No 47
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=64.79 E-value=49 Score=35.36 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRN 106 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~ 106 (520)
..++..|+.|+..+..+.
T Consensus 61 rdv~~rI~kLkn~L~~~s 78 (491)
T 1m1j_A 61 QNYSQRIDNIRQQLADSQ 78 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345555666665555553
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.67 E-value=1.4e+02 Score=30.76 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
|+++++.++..+-.++.+-...+-.+-.|++.|+.-..+.. ++|.+|-.+..++|..+.+.+..+..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666667777777766555532 47777777777777766666655544
No 49
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=61.85 E-value=29 Score=26.32 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 291 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krd 291 (520)
++.|..+++.|..++..|+..+.+++.++..-++|-.-++..+|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444455555555555555555554444
No 50
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=61.74 E-value=29 Score=36.77 Aligned_cols=60 Identities=27% Similarity=0.464 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE 277 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~ 277 (520)
+.++.++.+|+..|..+.+-.+ + .+..+.+.+.|+.+...++.+|+.++..+.++.+++.
T Consensus 41 r~~~~~~~~l~~~~n~~sk~i~----------~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAVEIG----------K-------RRKKGEPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------H-------HHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------H-------hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999887644222 1 1222344455555555555555555555444444443
No 51
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=61.15 E-value=31 Score=29.83 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 267 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 267 ~k~~al~~ei~~LqeEl~al~~krdeay~~i~~L 300 (520)
..+.++..+++.|...++.+-.+||=.|.+++.+
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666666666666555443
No 52
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=60.76 E-value=1.1e+02 Score=28.51 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 263 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 263 kel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
.++..++..+..++..+......+......+-+.+..|-++
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.41 E-value=77 Score=26.42 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 010022 204 LREIKQLEGT 213 (520)
Q Consensus 204 LkEIsqL~k~ 213 (520)
+.+.+.|+..
T Consensus 12 i~~~~~l~~~ 21 (117)
T 2zqm_A 12 LGQLESYQQQ 21 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.30 E-value=73 Score=26.15 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
.+||.+++.+...-..+.-.++.++..+..+..+...=...|..+=+.+..||+..|.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444444333333333333334444444444444444444555555555544443
No 55
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.26 E-value=35 Score=27.97 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKA------LDEEIEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~a------l~~ei~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
|+.|-.+|..+..+|..|...+.. -...+..|..++..+....+.+|..+-.|-.
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444431 1134666777777777777777777766643
No 56
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=58.49 E-value=22 Score=28.56 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 010022 291 DKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 291 deay~~i~~LRkerde~n~~f~ 312 (520)
..+-.+++.|-+.+..-++-|.
T Consensus 48 ~~~q~s~~~l~k~~~d~~~~~~ 69 (74)
T 2q6q_A 48 LNLQIKISDLEKKLSDANSTFK 69 (74)
T ss_dssp HHHHHHHHHHHHHTTCC-----
T ss_pred HHhhhhhHHHHhhccccchhhH
Confidence 3344445555555554444443
No 57
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.25 E-value=36 Score=36.56 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMA 219 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a 219 (520)
+.++.++.+|+..|..+..
T Consensus 43 r~~~~~~~~l~~~rn~~sk 61 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQK 61 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667788888888876543
No 58
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=57.03 E-value=76 Score=25.60 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhh
Q 010022 92 RAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~kl 161 (520)
-.++..+...-..|...-..+...+..-+.++..+..+++.+ -..++.|+.+|..|++.|.++
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~-------~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL-------LEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHh
Confidence 345555555555554444455555555555555555555444 444778888888888877664
No 59
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.22 E-value=1e+02 Score=26.88 Aligned_cols=11 Identities=9% Similarity=0.377 Sum_probs=3.6
Q ss_pred hhhHHHHHHHH
Q 010022 248 LDGVKKESQAV 258 (520)
Q Consensus 248 IdeLKkeldal 258 (520)
|.+++..++.+
T Consensus 40 i~elrr~iq~L 50 (131)
T 3tnu_A 40 ISELRRTMQNL 50 (131)
T ss_dssp -CHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.07 E-value=83 Score=25.78 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhh
Q 010022 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~kl 161 (520)
.++..+...-..|...-..+...+...+.++..+..+++.+ -..++.|+.+|..|++.|.++
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l-------~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA-------AQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHh
Confidence 34444444444443333344444444444444444444433 444777777777777777665
No 61
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=55.01 E-value=48 Score=28.09 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010022 281 QEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 281 eEl~al~~krdeay~~i~~LRke 303 (520)
..+..+..+++.+-..+..|..+
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 62
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=54.94 E-value=59 Score=34.96 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.3
Q ss_pred HHhCChHh
Q 010022 347 LWNNNKAF 354 (520)
Q Consensus 347 ~wn~d~~F 354 (520)
.|..-..|
T Consensus 174 ~~g~~~~~ 181 (501)
T 1wle_A 174 VVGDKPAF 181 (501)
T ss_dssp EESCCCCC
T ss_pred EeCCCCCC
Confidence 44443333
No 63
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.25 E-value=1.8e+02 Score=30.98 Aligned_cols=59 Identities=5% Similarity=0.023 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 010022 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRK 149 (520)
Q Consensus 91 lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~k 149 (520)
++..|++|+..+..+-+.-.....-+..++..-.....++.........+...++....
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~ 156 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYN 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 44555555555555544333333333333333333333343333333444444433333
No 64
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.11 E-value=97 Score=25.94 Aligned_cols=59 Identities=17% Similarity=0.315 Sum_probs=36.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
..+|..++.+-..+...|..|...-..+..+|..+..+...+...=...+...+.++-+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455666666666667777776666777777777776666666555555554444443
No 65
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=53.70 E-value=92 Score=25.56 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010022 297 IKELRKQR 304 (520)
Q Consensus 297 i~~LRker 304 (520)
+..|.++.
T Consensus 88 ~~~~~~~l 95 (107)
T 1fxk_A 88 EERVMKKL 95 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 66
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=52.53 E-value=86 Score=25.61 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGK 268 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k 268 (520)
|+.|+.....+...|.+++..
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~ 25 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDS 25 (86)
T ss_dssp -------CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455544444433
No 67
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=52.51 E-value=88 Score=33.43 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010022 278 ALQQEVN 284 (520)
Q Consensus 278 ~LqeEl~ 284 (520)
.|+..++
T Consensus 172 ~L~~~~~ 178 (464)
T 1m1j_B 172 VLRAVID 178 (464)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 68
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.75 E-value=26 Score=37.68 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 278 ALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 278 ~LqeEl~al~~krdeay~~i~~LRker 304 (520)
.|..+...+.++...+-..+..|..++
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 69
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=51.01 E-value=1.4e+02 Score=26.87 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV 283 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl 283 (520)
|.-|++++..-+-+..+..+.|..++-+-..+.+.+
T Consensus 121 iG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 121 IGILRKELENEKLKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 445677777766666677777666655544444443
No 70
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=50.65 E-value=1.6e+02 Score=27.59 Aligned_cols=19 Identities=16% Similarity=0.571 Sum_probs=9.6
Q ss_pred HHHHHHHHHhCChHhHHHHHHH
Q 010022 340 EVEKYMTLWNNNKAFRDDYEKR 361 (520)
Q Consensus 340 eve~fm~~wn~d~~FR~dY~k~ 361 (520)
+|+.|+... .+.|..|+-|
T Consensus 159 dv~~Fl~~y---~~~R~~yH~R 177 (192)
T 2p22_C 159 DLDQFIKNY---LDIRTQYHLR 177 (192)
T ss_dssp HHHHHHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHH---HHHHHHHHHH
Confidence 444444333 4556666644
No 71
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.63 E-value=1.2e+02 Score=28.04 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHH
Q 010022 271 ALDEEIEALQQEVNDVA-------EKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 271 al~~ei~~LqeEl~al~-------~krdeay~~i~~LRkerde~n~~f 311 (520)
.+..++..++.+++++. ++++.+.+++.+||.+.......|
T Consensus 89 ~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 89 ALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443 355555555555665555444433
No 72
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=49.94 E-value=1.1e+02 Score=25.41 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 010022 277 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 277 ~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~ 312 (520)
..|....+.+...+..+-..+..|.++..+....+|
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 73
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=49.74 E-value=1e+02 Score=24.87 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 260 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 260 ~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
.++.+++.....+...+..|+..+.....+++.+-.++..|-..+|-+-.++...|.-+.+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555555666666666777777777777777777777777777777666666666655544
No 74
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=49.71 E-value=30 Score=36.23 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
...|..+...+.++...+-..+.++..+++
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444444443
No 75
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.68 E-value=1.1e+02 Score=25.15 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHH
Q 010022 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEP 153 (520)
Q Consensus 95 I~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~ 153 (520)
-..++.+|+ .+..|.+++...|+.-..+..+|+....+.+.+...+..+.++|..
T Consensus 16 QSALeaEIq----AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 16 QEALEEEVL----TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445554 4447777787788777777778877777766665555555454444
No 76
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.92 E-value=1.8e+02 Score=27.37 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=39.9
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 243 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 243 ~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
.+..+|..++...+.++..|-.|+-..+.+......+..-+..+-.+-+.+++.+--|-.+.+++
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EK 156 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEK 156 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666665555566666666666666666666666666653
No 77
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.83 E-value=63 Score=29.07 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 261 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 261 kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
+++.+...+..+..++..|+.++..-...|..+-.....+..+..++...+|.
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455677788888888888889999999999999999999998886
No 78
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=45.59 E-value=1.4e+02 Score=25.28 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHhhh
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKR---GVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R---~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~kl 161 (520)
+.+...+..+.+.+...+...+.+.+.+...+ ..-.-|..|+...++....-|+.+..-..+...|+..+..+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56888899999988888777777776665554 22233333333333333344444444444555555555443
No 79
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.82 E-value=1.4e+02 Score=25.28 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=40.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhH
Q 010022 245 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ-RDEGNA 309 (520)
Q Consensus 245 ~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke-rde~n~ 309 (520)
+.+++.+|.+++.+...+..+...+..+...+..-+.....+-..+..+-..+-.|... +++.|.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 69 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666554 445554
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.82 E-value=2.8e+02 Score=28.56 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 010022 200 EKQILREIKQLEGT 213 (520)
Q Consensus 200 EKklLkEIsqL~k~ 213 (520)
++.+..|+..|-+.
T Consensus 323 ~~eF~~Eve~L~~i 336 (487)
T 3oja_A 323 SETERLECERENQA 336 (487)
T ss_dssp --CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 44444444444443
No 81
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=44.29 E-value=47 Score=26.80 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=43.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
.+|++|++++..++.+-.+..-.+-.|.+.+..=..++-.+-.+-=.+|..+.+++++...
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~ 63 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTAS 63 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888877777666666666777766666667777777777777777777776544
No 82
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=44.25 E-value=1.3e+02 Score=24.56 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHH
Q 010022 101 EIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMD 145 (520)
Q Consensus 101 eI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~ 145 (520)
++..+...-.++.+.-+++---++.|+.++..|..++..++..+.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELE 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333444444444444445555566778888777777666655443
No 83
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.17 E-value=25 Score=36.82 Aligned_cols=9 Identities=11% Similarity=0.253 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010022 251 VKKESQAVW 259 (520)
Q Consensus 251 LKkeldalr 259 (520)
|+.+++.+.
T Consensus 49 l~~~~n~~s 57 (425)
T 2dq3_A 49 LRSERNKLS 57 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 84
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.60 E-value=1e+02 Score=29.25 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L 158 (520)
..++..++.++..|.+|......+..++..+-.+-..|..+|.+++.+.+.+..........|.-..+.+
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~ 78 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLY 78 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHH
Confidence 3567788899999999999999999999999999999999999999998877776655554444333333
No 85
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=43.41 E-value=1.3e+02 Score=24.34 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKV 269 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~ 269 (520)
|+.++.....+...|.+++..+
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~ 24 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENF 24 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444433
No 86
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.78 E-value=30 Score=26.13 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=14.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDE 274 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ 274 (520)
.+++.|+.+.+.++.++..|...+..++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444444333
No 87
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.60 E-value=32 Score=36.03 Aligned_cols=62 Identities=23% Similarity=0.480 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 200 EKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEA 278 (520)
Q Consensus 200 EKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~ 278 (520)
=+.++.++.+|+..|..+.+ .+++. +..+.+...|+.+...++.+|+.++..+.++.+++..
T Consensus 39 ~r~~~~~~~~l~~~~n~~sk----------~i~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 39 RREIIKRLEALRSERNKLSK----------EIGKL-------KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HTTGG-------GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHH-------hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999987533 33321 1123344555555555555555555554444444433
No 88
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.57 E-value=82 Score=27.21 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010022 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSL 133 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~L 133 (520)
.++.+.+..++.+|..+++....+...+..+..+|+=+++.|+.+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888898888888665
No 89
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.46 E-value=74 Score=29.57 Aligned_cols=45 Identities=24% Similarity=0.165 Sum_probs=19.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh
Q 010022 115 ELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 115 ~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~ 159 (520)
+...+|........+|.+|...-.-=.+.+....++|..|+..+.
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 333334434444444444433222222344445555555555443
No 90
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=42.19 E-value=1.6e+02 Score=25.12 Aligned_cols=77 Identities=8% Similarity=0.127 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHHHHH
Q 010022 267 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEVEK 343 (520)
Q Consensus 267 ~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~--~v~el~~~~~~eve~ 343 (520)
+.+..+..+|+.|..++-.+..+|-.+-..+..++....----.--.-...+..+..++..+ +-..++.+...-++-
T Consensus 12 ~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii~~ 90 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFIIKE 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34556666677777777788888888888888888754321112223344555666665443 344555554444433
No 91
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=42.01 E-value=66 Score=34.51 Aligned_cols=21 Identities=0% Similarity=-0.195 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010022 201 KQILREIKQLEGTREKVMANA 221 (520)
Q Consensus 201 KklLkEIsqL~k~Rk~v~a~~ 221 (520)
+.++.++.+|+..|..+.+-.
T Consensus 47 r~~~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 47 RRTQFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999875533
No 92
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.67 E-value=29 Score=25.27 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=16.2
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHH
Q 010022 237 IQDQVKLMGSDLDGVKKESQAVWAKISHLEG 267 (520)
Q Consensus 237 iqeqiK~l~~eIdeLKkeldalr~kIkel~~ 267 (520)
+..++...+.+|+-.+++++.++.++++|++
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555543
No 93
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.35 E-value=48 Score=26.80 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010022 266 EGKVKALDEEIEALQQEV 283 (520)
Q Consensus 266 ~~k~~al~~ei~~LqeEl 283 (520)
...+......|..|+.++
T Consensus 46 Ek~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 94
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=39.16 E-value=2.5e+02 Score=29.22 Aligned_cols=64 Identities=9% Similarity=0.104 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF-----ANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay-----~~i~~LRkerde~n~~f~~~ 314 (520)
|+.+-..++.++. .+..++...-.+++.|-.++..|+.++..+. ..=+.|+++||.+-.++-++
T Consensus 80 ~n~~~~~L~~~~~---~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 80 FKTTDQYLRDQDK---QVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHhh
Confidence 3444445554443 3344455555667777777777777775542 34557888888876654443
No 95
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=38.26 E-value=63 Score=33.75 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 92 RAKIDLTDREIQRRNQARMQLMDELR 117 (520)
Q Consensus 92 kakI~~a~keI~kl~q~R~~I~a~i~ 117 (520)
..+--.+..+++.++..|+.+..+|.
T Consensus 34 ~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 34 DREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555554444
No 96
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=37.50 E-value=2.3e+02 Score=25.58 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred ceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH--HhhHHHHHHHHHHHHHHhHHhHHHHH
Q 010022 77 NFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLM---------DELRAK--RGVRGDLAAQLRSLKTEGRQYKSVMD 145 (520)
Q Consensus 77 ~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~---------a~i~~~--R~~R~eL~~qLk~Lr~q~k~~r~~~~ 145 (520)
+.||--.++|+-..+-..+..++.--..-...|..|. ..++.+ +..-..+..+++........|...+.
T Consensus 13 ~~~~~~~~p~~~~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~ 92 (152)
T 4fla_A 13 NLYFQGAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLA 92 (152)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHhhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 146 DKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMAN 220 (520)
Q Consensus 146 ~K~kEi~~Lqe~L~klre~nnArs~~~fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~ 220 (520)
..+++...|...|... +...+..+..-...|.+=|..+..++++++..+.-+.+
T Consensus 93 ~E~~dR~~L~~~L~~~---------------------~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 93 AELEDRRQLARMLVEY---------------------TQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 97
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.00 E-value=2.8e+02 Score=28.97 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hhhHHHHHHhhccchhh
Q 010022 179 LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGK--------KEDIQDQVKLMGSDLDG 250 (520)
Q Consensus 179 ID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~es~~~--------ke~iqeqiK~l~~eIde 250 (520)
|+..|..||. +|++++++...-..++... +++... .+.+....+.|..+|..
T Consensus 36 V~~~l~~LE~--------------~l~elsn~ts~v~~Lvk~i------q~~~~~~Q~~~~d~~e~~tq~skkml~~~~~ 95 (409)
T 1m1j_C 36 TDGELLEIEG--------------LLQQATNSTGSIEYLIQHI------KTIYPSEKQTLPQSIEQLTQKSKKIIEEIIR 95 (409)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH------HHHSCSSTTCCSSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHH--------------HHHHHHHHHHHHHHHHHHH------HHhcccccCCCCCchhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 286 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al 286 (520)
+..-+......|..|...+..++..|..|...+..+
T Consensus 96 ~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 96 YENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 98
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=36.76 E-value=2e+02 Score=27.37 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=49.5
Q ss_pred eccCC-CCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh--------HHhHHHHHHHHHh
Q 010022 81 IRHRQ-YDDPK-IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG--------RQYKSVMDDKRKE 150 (520)
Q Consensus 81 vKvp~-pDd~~-lkakI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~Lr~q~--------k~~r~~~~~K~kE 150 (520)
+...+ +|+.. +..-++-+-..+..+.+.-..+..+...+....+.+.+++..+.... ..|-..+++|...
T Consensus 111 i~L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~K 190 (213)
T 1ik9_A 111 FNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTK 190 (213)
T ss_dssp EECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44433 56543 35556666666666655566666666667777777777776665433 4666778888888
Q ss_pred hHHHHHHH
Q 010022 151 MEPLHQAL 158 (520)
Q Consensus 151 i~~Lqe~L 158 (520)
|+.|++.|
T Consensus 191 IR~lq~~L 198 (213)
T 1ik9_A 191 IRSLHNKL 198 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777444
No 99
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=36.49 E-value=2.2e+02 Score=25.01 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=15.6
Q ss_pred ceeeeccCCCCchHHHHHHHHHHHHHHHHHHH
Q 010022 77 NFYFIRHRQYDDPKIRAKIDLTDREIQRRNQA 108 (520)
Q Consensus 77 ~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~ 108 (520)
|||.|+ .++...|+.++.-+..+...
T Consensus 28 PF~~Vk------~EVq~sl~~l~~l~~~w~~l 53 (130)
T 4dnd_A 28 PFFVVR------GEVQKAVNTARGLYQRWCEL 53 (130)
T ss_dssp CHHHHH------HHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 455555 56666677666666655433
No 100
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.31 E-value=2.4e+02 Score=25.36 Aligned_cols=10 Identities=0% Similarity=0.039 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 010022 317 LLNEAKAMSV 326 (520)
Q Consensus 317 ~~~karela~ 326 (520)
++++.++|.+
T Consensus 96 DiRKLrELEA 105 (167)
T 4gkw_A 96 DMRKLGELEA 105 (167)
T ss_dssp HHHHTHHHHH
T ss_pred hHHHHHHHHh
Confidence 3444444433
No 101
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.65 E-value=1.8e+02 Score=23.72 Aligned_cols=30 Identities=13% Similarity=0.382 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 275 EIEALQQEVNDVAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 275 ei~~LqeEl~al~~krdeay~~i~~LRker 304 (520)
.+..+..++..+..+.+.+-..+..|+...
T Consensus 73 ~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 73 KLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 102
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=35.56 E-value=4.5e+02 Score=28.30 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCChHhHHHHHHHhHHHHhhhhhccCCCCCCCCCCccccccC
Q 010022 337 SNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAET 390 (520)
Q Consensus 337 ~~~eve~fm~~wn~d~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~p~~~~~~ 390 (520)
...+|.++|+.|.+++ +.||++--|--++|||-+.
T Consensus 95 ~~~~~~k~lae~ek~k-------------------~eDGyLs~~~aQ~Lvf~sE 129 (497)
T 3iox_A 95 EQTSIKAALAELEKHK-------------------NEDGNLTEPSAQNLVYDLE 129 (497)
T ss_dssp HHHHHHHHHHHHTTTT-------------------TSTTSBSSCCCBCEECSCC
T ss_pred HHHHHHHHHHHHhhcc-------------------ccCCCccchhcccceecCC
Confidence 4455778888887765 6799999999999998764
No 103
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.40 E-value=1.8e+02 Score=23.94 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 297 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i 297 (520)
+|+.||-.+..+-+.-.+-+.++.+-++++..|+.++..=.+....+-..+
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
No 104
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.54 E-value=1.9e+02 Score=24.87 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 266 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 266 ~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRke 303 (520)
.+.+..++.++.....++...+-..+.+...+..|+.+
T Consensus 43 eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 43 EEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444433
No 105
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=34.39 E-value=82 Score=26.00 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=44.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 246 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 246 ~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
.+|++|++++..++.+--+..-.+-.|-+++..=..++-.+-.+-=.+|..+.++|++....
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887776666667777777777777777777777778888888887776653
No 106
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.16 E-value=1.4e+02 Score=28.22 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010022 268 KVKALDEEIEALQQEVNDVAEKR 290 (520)
Q Consensus 268 k~~al~~ei~~LqeEl~al~~kr 290 (520)
+++..+.++..|+.++.++....
T Consensus 35 ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444443
No 107
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=33.49 E-value=4.4e+02 Score=27.53 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010022 290 RDKAFANIKELRKQRDEGNAYFFQYRALLNEA 321 (520)
Q Consensus 290 rdeay~~i~~LRkerde~n~~f~~~r~~~~ka 321 (520)
.+++..+......+..+..+.|......++..
T Consensus 187 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~ 218 (486)
T 3haj_A 187 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQG 218 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 108
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.48 E-value=1.8e+02 Score=23.46 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 010022 292 KAFANIKELRKQRDE 306 (520)
Q Consensus 292 eay~~i~~LRkerde 306 (520)
+.-..|..|+.+.|+
T Consensus 51 ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 51 QKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 109
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=33.22 E-value=3e+02 Score=25.52 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 010022 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRS 132 (520)
Q Consensus 93 akI~~a~keI~kl~q~R~~I~a~i~~~R~~R~eL~~qLk~ 132 (520)
.+|-.+++++..++...-.=.+.-...|..-.++...+..
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~ 45 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQ 45 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655544333333333334333444444333
No 110
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=33.04 E-value=2.2e+02 Score=23.87 Aligned_cols=9 Identities=22% Similarity=0.601 Sum_probs=4.0
Q ss_pred HhHHHHHHH
Q 010022 353 AFRDDYEKR 361 (520)
Q Consensus 353 ~FR~dY~k~ 361 (520)
.||+.|..+
T Consensus 117 ~yre~~k~r 125 (127)
T 1ez3_A 117 DYRERCKGR 125 (127)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 444444433
No 111
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=32.59 E-value=3.7e+02 Score=27.74 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010022 310 YFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 348 (520)
Q Consensus 310 ~f~~~r~~~~karela~~~~v~el~~~~~~eve~fm~~w 348 (520)
.|.....++..+.+|+...+-.++.+++..|+..+-...
T Consensus 72 ~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l 110 (365)
T 1gqe_A 72 QMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKL 110 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 344455556666676655434467777777766655443
No 112
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=31.14 E-value=2.3e+02 Score=23.57 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHH
Q 010022 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSE 340 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~--~v~el~~~~~~e 340 (520)
+..+..+|+.|..++-.+-.+|-.+-..+..++.....---.--.-...+..+...+..+ +-..++.+...-
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~i 80 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLI 80 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHH
Confidence 445556677777777777888888888888887754311111222334455555554432 344444444333
No 113
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=30.71 E-value=2.6e+02 Score=24.16 Aligned_cols=6 Identities=33% Similarity=0.291 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010022 252 KKESQA 257 (520)
Q Consensus 252 Kkelda 257 (520)
..++.+
T Consensus 54 ~~qL~~ 59 (129)
T 2fxo_A 54 QLQVQA 59 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 114
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=30.51 E-value=4.1e+02 Score=27.40 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHH
Q 010022 173 CSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREK 216 (520)
Q Consensus 173 fkSveEID~rI~~LE~~IqhgSL--sL~EEKklLkEIsqL~k~Rk~ 216 (520)
+...+.+..++..|+..+...++ ....=.++++|.+.|+..-..
T Consensus 24 ~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~ 69 (365)
T 1gqe_A 24 YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDT 69 (365)
T ss_dssp HTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998887665 244446778888888777554
No 115
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.42 E-value=1.2e+02 Score=25.03 Aligned_cols=37 Identities=8% Similarity=0.285 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010022 270 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 306 (520)
Q Consensus 270 ~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde 306 (520)
..++...-..+.++.....+-.++-.++..|+++..+
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444443
No 116
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.17 E-value=3.5e+02 Score=25.43 Aligned_cols=27 Identities=11% Similarity=0.405 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRK 302 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRk 302 (520)
++.|+.++..+...++.+-..|..|--
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666655543
No 117
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.10 E-value=2.2e+02 Score=23.05 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVND------VAEKRDKAFANIKELRKQRDEGNAYFF 312 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~a------l~~krdeay~~i~~LRkerde~n~~f~ 312 (520)
+++++.|-..| ..+..++..|+.++.. =..+...+...+..|..+++.+...|.
T Consensus 21 qrEle~le~~I-------e~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 21 QRELEQLPQLL-------EDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444 4444445555555432 134556666666777777777666654
No 118
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.88 E-value=1.8e+02 Score=21.88 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010022 286 VAEKRDKAFANIKELRKQR 304 (520)
Q Consensus 286 l~~krdeay~~i~~LRker 304 (520)
+.+--.++..+|..|+.+.
T Consensus 28 L~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 28 LMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 119
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.85 E-value=1.6e+02 Score=22.15 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 286 (520)
Q Consensus 250 eLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al 286 (520)
+++.+++.+.++-..|.+-+.....+|..|.++++.+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555554444445555555555555555555443
No 120
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.37 E-value=2e+02 Score=30.73 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKI 262 (520)
Q Consensus 248 IdeLKkeldalr~kI 262 (520)
++.|+.+++.+..+|
T Consensus 53 ~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 53 TEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 121
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.09 E-value=95 Score=24.74 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVA 287 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~ 287 (520)
+|+.++..+......|..+...+.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 122
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.09 E-value=1.4e+02 Score=30.98 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 254 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 289 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~ei~~LqeEl~al~~k 289 (520)
+++++..+|..+..+...+...+..++.++..+.++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554443
No 123
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.02 E-value=1.4e+02 Score=30.36 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~L 300 (520)
.++..+......+..|+..+..+..+++.+-..|..|
T Consensus 16 ~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 16 ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555544444444444433
No 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.55 E-value=5e+02 Score=26.63 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 010022 273 DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 273 ~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f 311 (520)
....+..+++.+.+.++.+.+...+.++-.+..+.+..|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 333444455555555555555555555555555554433
No 125
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.48 E-value=1.7e+02 Score=24.87 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=21.2
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 010022 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVK 270 (520)
Q Consensus 240 qiK~l~~eIdeLKkeldalr~kIkel~~k~~ 270 (520)
.+..++.+|+.|+.+.+.++..+..|+-++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777777777777777766654
No 126
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=28.31 E-value=2.3e+02 Score=22.71 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 305 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerd 305 (520)
+..+..+|+.+..++-.+-.+|-.+-..+..++....
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~ 41 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELG 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4555566777777777788888888888888887653
No 127
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.30 E-value=2.3e+02 Score=23.80 Aligned_cols=57 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhhHHHHHHHHHHHHHHhHHhHHHHHH
Q 010022 90 KIRAKIDLTDREIQRRNQARMQLMDELRA------------KRGVRGDLAAQLRSLKTEGRQYKSVMDD 146 (520)
Q Consensus 90 ~lkakI~~a~keI~kl~q~R~~I~a~i~~------------~R~~R~eL~~qLk~Lr~q~k~~r~~~~~ 146 (520)
.|..+|+.++.+|.+..+.|.+|..-++. .-....++...|..|+.....|...+.+
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 128
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=28.29 E-value=5.5e+02 Score=27.64 Aligned_cols=51 Identities=8% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 257 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 257 alr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
-|++.+...+.++..+...+++++..+.++..+.+.+...+.++.++...+
T Consensus 353 ~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 353 KLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555666666666666666666666666666655554444
No 129
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=28.24 E-value=1.3e+02 Score=28.13 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 320 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~k 320 (520)
+..||.+++.+.++ +..++-+|..++..+..-+|+.|..+-+
T Consensus 5 L~~iQ~e~~~l~~~---~~~e~~~le~ky~~~~~p~y~kR~~iI~ 46 (193)
T 3kyp_A 5 FEDIQKDIEQLDIK---CAHEQMNIQKQYDEKKKPLFEKRDEIIQ 46 (193)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 44555555555543 4456667777777777778877776655
No 130
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.11 E-value=1e+02 Score=23.23 Aligned_cols=20 Identities=20% Similarity=0.332 Sum_probs=7.8
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 010022 247 DLDGVKKESQAVWAKISHLE 266 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~ 266 (520)
++++|+.+++.+...+.++.
T Consensus 27 E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444333333333
No 131
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=27.76 E-value=2.5e+02 Score=22.91 Aligned_cols=30 Identities=7% Similarity=0.203 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 264 HLEGKVKALDEEIEALQQEVNDVAEKRDKA 293 (520)
Q Consensus 264 el~~k~~al~~ei~~LqeEl~al~~krdea 293 (520)
.+.+.+.........|......+...++.+
T Consensus 25 ~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 25 KMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 132
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=27.26 E-value=2.4e+02 Score=22.67 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=21.3
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 240 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 287 (520)
Q Consensus 240 qiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~ 287 (520)
.++.++.+|.+--.++..++..++--.+.++.+++++-+|.-|.+-+.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~ 66 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQ 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHH
Confidence 444444444443444444444443333444455555555544444433
No 133
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.95 E-value=2.8e+02 Score=23.15 Aligned_cols=19 Identities=5% Similarity=0.239 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010022 271 ALDEEIEALQQEVNDVAEK 289 (520)
Q Consensus 271 al~~ei~~LqeEl~al~~k 289 (520)
.++..+..|..++..++..
T Consensus 41 ~~q~~i~~lE~eL~~~r~e 59 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQ 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455554444443
No 134
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=26.26 E-value=6.4e+02 Score=27.16 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=29.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 010022 247 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 311 (520)
Q Consensus 247 eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f 311 (520)
++.++|+-.++-.+.-..|...++..+.+|..+...++++...++....+.+........+..+.
T Consensus 336 ~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek 400 (602)
T 1cii_A 336 DVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEK 400 (602)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333344444444445555555555444444444444444444444433333
No 135
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=25.86 E-value=3.5e+02 Score=23.97 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHH
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR----DEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRker----de~n~~f~~~r~~~~kare 323 (520)
+.++.+-+.|+..+..+...+..+......|+.+...+....+.+-..+..++.++ +......-..-..+....+
T Consensus 25 ~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e 103 (155)
T 2oto_A 25 IRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKE 103 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 136
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=25.70 E-value=3.1e+02 Score=23.33 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 208 KQLEGTREKVMANAAMRAKIQESMGK-KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 286 (520)
Q Consensus 208 sqL~k~Rk~v~a~~~~~aki~es~~~-ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al 286 (520)
++|...+.........+..+...|.. ....+.....-...|+.++.++..-...+..+...++.....=..|...+.++
T Consensus 15 KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l 94 (107)
T 2no2_A 15 KQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAEL 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 010022 287 AEKRDKA 293 (520)
Q Consensus 287 ~~krdea 293 (520)
...|+.+
T Consensus 95 ~~Ek~~L 101 (107)
T 2no2_A 95 EKERDSL 101 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 137
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=25.47 E-value=2.9e+02 Score=23.31 Aligned_cols=75 Identities=8% Similarity=0.122 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc-c-CHHHHHHHHHH
Q 010022 270 KALDEEIEALQQEVN--------DVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK-K-DVQGLKELSNS 339 (520)
Q Consensus 270 ~al~~ei~~LqeEl~--------al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~-~-~v~el~~~~~~ 339 (520)
..+..+|+.+..++- .+-++|-.+-..+..++....---..--.-...+..++.++.. | +-..+..+...
T Consensus 6 ~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if~~ 85 (104)
T 2gtv_X 6 AEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIFQR 85 (104)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 344444555555666 6666677777777777765431111112222333444444433 2 44445554444
Q ss_pred HHHHH
Q 010022 340 EVEKY 344 (520)
Q Consensus 340 eve~f 344 (520)
-++..
T Consensus 86 ii~~s 90 (104)
T 2gtv_X 86 LIEHN 90 (104)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 138
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=25.28 E-value=3.2e+02 Score=23.39 Aligned_cols=28 Identities=11% Similarity=0.302 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 258 VWAKISHLEGKVKALDEEIEALQQEVND 285 (520)
Q Consensus 258 lr~kIkel~~k~~al~~ei~~LqeEl~a 285 (520)
+.=++.-|++.+..+.+.+..++.++..
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444333333
No 139
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.03 E-value=2.3e+02 Score=27.45 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010022 265 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 308 (520)
Q Consensus 265 l~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n 308 (520)
+..++..++.+.++++..+..+ ...+-+||.++|...
T Consensus 183 l~~~L~~~~~e~~s~~~~~~~~-------~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 183 LSDDLSRTRDDRDSMVAQLAQC-------RQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhh
Confidence 3333444444444444444433 344455666666544
No 140
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=24.61 E-value=2.6e+02 Score=23.08 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHHHHHHH
Q 010022 269 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEVEKYM 345 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~r~~~~karela~~~--~v~el~~~~~~eve~fm 345 (520)
+..+..+|+.|..++-.+-.+|-.+-..+..++.. ..---.--.-...+..+..++..+ +-..++.+...-++-+.
T Consensus 10 L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~-~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~ 87 (101)
T 3ret_A 10 LADIREAIDRIDLDIVQALGRRMDYVKAASRFEAS-EAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYI 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS-GGGTTCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Confidence 34455556666777777777777777777777764 211111222234455556655443 44555555554444443
No 141
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.56 E-value=2.4e+02 Score=21.62 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 260 AKISHLEGKVKALDEEIEALQQEVNDV 286 (520)
Q Consensus 260 ~kIkel~~k~~al~~ei~~LqeEl~al 286 (520)
.+...|......|..++..|..++..+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444333
No 142
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=24.56 E-value=1.2e+02 Score=23.13 Aligned_cols=49 Identities=31% Similarity=0.610 Sum_probs=30.0
Q ss_pred hhHHHHHHhh--ccchhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 010022 235 EDIQDQVKLM--GSDLDGVKKESQAVWAKISHLE--GKVKALDEEIEALQQEV 283 (520)
Q Consensus 235 e~iqeqiK~l--~~eIdeLKkeldalr~kIkel~--~k~~al~~ei~~LqeEl 283 (520)
.++.+.++++ +..|.+|+++-.+++.+|.+|- -.+..+.+++..|.+++
T Consensus 12 kaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 12 KALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp HHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3445566766 4568889999888888876653 22334444555554443
No 143
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.38 E-value=5.8e+02 Score=25.99 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhHHH
Q 010022 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQ-LEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKK 253 (520)
Q Consensus 175 SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsq-L~k~Rk~v~a~~~~~aki~es~~~ke~iqeqiK~l~~eIdeLKk 253 (520)
...++...|...=..+-.|.++..+= |+++.. +++..+...+.. .+.+....+..+|+++++
T Consensus 349 ~~~~~~~~~~~~~~~vl~G~~t~eea---l~~~~~~i~~~l~~~~~~~--------------e~~~~~~~~~~~~~~~~~ 411 (471)
T 3mq9_A 349 QMSAFWYAVRTAVINAASGRQTVDEA---LKDAQTRITAARDGLRAVM--------------EARNVTHLLQQELTEAQK 411 (471)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCHHHH---HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHHHHHhhHHHH--------------HhhhHHHHHHHHHHHHhh
Confidence 34566666666666677788876443 222211 111111111101 112223334455777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010022 254 ESQAVWAKISHLEGKVKALDEE 275 (520)
Q Consensus 254 eldalr~kIkel~~k~~al~~e 275 (520)
.+..++.+-....-.+-+|++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (471)
T 3mq9_A 412 GFQDVEAQAATANHTVMALMAS 433 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhcchhHHHHHHH
Confidence 8877777766555444444443
No 144
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.30 E-value=3.5e+02 Score=23.40 Aligned_cols=38 Identities=11% Similarity=0.277 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010022 273 DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 314 (520)
Q Consensus 273 ~~ei~~LqeEl~al~~krdeay~~i~~LRkerde~n~~f~~~ 314 (520)
...++.|+.++..+...++.+-..|..|-- .|++|-..
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq----~NDDLER~ 71 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQ----ANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHH
Confidence 345788888888888888888888877743 45555443
No 145
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=24.12 E-value=4.6e+02 Score=26.92 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHH
Q 010022 176 EEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREKV 217 (520)
Q Consensus 176 veEID~rI~~LE~~IqhgSL--sL~EEKklLkEIsqL~k~Rk~v 217 (520)
.+.+..++..|+..+...++ ....=.++++|.+.|+..-...
T Consensus 5 l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~ 48 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLI 48 (354)
T ss_dssp HHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888776654 2344467788888887775543
No 146
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=24.11 E-value=1.4e+02 Score=25.12 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=25.5
Q ss_pred cceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHHHHHHHHHhHHhHHHH
Q 010022 76 HNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMD-----ELRAKRGVRGDLAAQLRSLKTEGRQYKSVM 144 (520)
Q Consensus 76 ~~~yfvKvp~pDd~~lkakI~~a~keI~kl~q~R~~I~a-----~i~~~R~~R~eL~~qLk~Lr~q~k~~r~~~ 144 (520)
|.-|+.++ -|+ ...-.+...+..++..++.....|.+ +-..++-+-+.+.++|..+..+....+..+
T Consensus 8 h~~wi~~l-~~~-s~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F 79 (93)
T 3sjb_C 8 HEKWISKF-APG-NELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAF 79 (93)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-ccC-cHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 444 44445555666666655555544431 112233333444444444444444444433
No 147
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.07 E-value=2.8e+02 Score=22.22 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=29.2
Q ss_pred hhhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 234 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 292 (520)
Q Consensus 234 ke~iqeqiK~l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krde 292 (520)
...+..++..+..+|+.|..=+-.+|+++-.-.+-..++..+....+-...++...++.
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccc
Confidence 33444455555555666665555566555333333334444444455555555554443
No 148
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=23.64 E-value=4.7e+02 Score=24.71 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=11.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 010022 301 RKQRDEGNAYFFQYRALLNEAKA 323 (520)
Q Consensus 301 Rkerde~n~~f~~~r~~~~kare 323 (520)
....+...++|.......+..+.
T Consensus 178 ~~~~~~a~~~Y~~~v~~~n~~~~ 200 (301)
T 2efk_A 178 SHMAEESKNEYAAQLQRFNRDQA 200 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555533
No 149
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.55 E-value=2.9e+02 Score=22.24 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 249 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298 (520)
Q Consensus 249 deLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~ 298 (520)
..|++++..--..|..|.+.+.--.+....|++++-.++=+=+-+-.++.
T Consensus 21 ~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 33344443333334344443333333444444444444444443333333
No 150
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.55 E-value=2.2e+02 Score=21.39 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 010022 269 VKALDEEIEALQQEVN 284 (520)
Q Consensus 269 ~~al~~ei~~LqeEl~ 284 (520)
...+..++..|..++.
T Consensus 38 n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 38 NGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 151
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.42 E-value=3.6e+02 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010022 276 IEALQQEVNDVAEKRDKAFANIKELRKQRDEG 307 (520)
Q Consensus 276 i~~LqeEl~al~~krdeay~~i~~LRkerde~ 307 (520)
-+..+.++..+..-|...+.++..|..+-|-+
T Consensus 72 q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 72 KRDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34567888888888888888888887765543
No 152
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.35 E-value=2.2e+02 Score=25.86 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=29.8
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 244 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 289 (520)
Q Consensus 244 l~~eIdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~k 289 (520)
+...+.+++..+++.++.++.+...+.++..++..|..++..+...
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEe 109 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4456677777777777777777777666666666665555554433
No 153
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.08 E-value=3.8e+02 Score=23.38 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 010022 203 ILREIKQLE 211 (520)
Q Consensus 203 lLkEIsqL~ 211 (520)
.|.-|..|+
T Consensus 48 ~l~~I~~lr 56 (142)
T 3gp4_A 48 WILFTRQMR 56 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 355555554
No 154
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=22.95 E-value=4.6e+02 Score=24.39 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010022 183 IRSLQYRIQHEIIPLSEEKQILREIKQL 210 (520)
Q Consensus 183 I~~LE~~IqhgSLsL~EEKklLkEIsqL 210 (520)
+..|..++.+|.-.+.+=..++++=..+
T Consensus 20 ~~~l~~~~~~g~~~~~el~~f~~eRa~i 47 (276)
T 2v0o_A 20 FDVLYHNMKHGQISTKELADFVRERATI 47 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444434444444333
No 155
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.19 E-value=4.7e+02 Score=24.20 Aligned_cols=118 Identities=12% Similarity=0.175 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--------HHHhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHHh
Q 010022 89 PKIRAKIDLTDREIQRRNQARM-QLMDELR--------AKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (520)
Q Consensus 89 ~~lkakI~~a~keI~kl~q~R~-~I~a~i~--------~~R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L~ 159 (520)
+.+..-|+.|+.-|.++-..-. .+.+.+- +++..+.+|......|.....++......-...++.|+..+.
T Consensus 8 ~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 8 TNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777766633222 3333332 235555666555566665555555555555566666666444
Q ss_pred hhhhhhccccCCCCCCHHH---------------------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010022 160 KLRTTNNARSGGICSSEEE---------------------LDDLIRSLQYRIQHEIIPLSEEKQILREIKQL 210 (520)
Q Consensus 160 klre~nnArs~~~fkSveE---------------------ID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL 210 (520)
++.+.-+.-+.+ -.++++ |+.-|+.|..-+.+|.+++.. +|+.+..|
T Consensus 88 k~~e~~~~~~~~-~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~---ylK~vR~L 155 (174)
T 2p22_A 88 KVQQFSSTSHVD-DEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDT---FVKQGREL 155 (174)
T ss_dssp HHHHHTTSSCCC-SSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHH---HHHHHHHH
T ss_pred HHHHHHhcCCCC-CCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHH
Confidence 433211111111 124554 888999999999999999874 55544443
No 156
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.90 E-value=3.8e+02 Score=23.02 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 248 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 286 (520)
Q Consensus 248 IdeLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al 286 (520)
+...|.++..++..|..|...++.+.....+|...+..+
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444555555444444444444444444444444433
No 157
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=21.37 E-value=3e+02 Score=25.15 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHH
Q 010022 175 SEEELDDLIRSLQ 187 (520)
Q Consensus 175 SveEID~rI~~LE 187 (520)
|+..|..+|..+.
T Consensus 21 Sl~qL~nrla~~~ 33 (158)
T 3tul_A 21 SLSQLESRLAVWQ 33 (158)
T ss_dssp THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5556666665554
No 158
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.32 E-value=1.7e+02 Score=19.64 Aligned_cols=6 Identities=50% Similarity=0.545 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010022 251 VKKESQ 256 (520)
Q Consensus 251 LKkeld 256 (520)
|++++.
T Consensus 14 lkkeia 19 (33)
T 4dzn_A 14 LKKEIA 19 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 159
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.22 E-value=2.5e+02 Score=21.47 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=21.9
Q ss_pred HhhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhHHHHHHH
Q 010022 120 RGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (520)
Q Consensus 120 R~~R~eL~~qLk~Lr~q~k~~r~~~~~K~kEi~~Lqe~L 158 (520)
+.+-.+|..+...|..+...++..+..-..|+..|.+.|
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666566555555555555554444
No 160
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.20 E-value=2.7e+02 Score=22.35 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 300 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~krdeay~~i~~L 300 (520)
+-..+..|..++.-..+-++.++..+-..+.+++.+......++.++.++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555555555544444444444443
No 161
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.13 E-value=3.6e+02 Score=22.43 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010022 250 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA------EKRDKAFANIKELRKQRDEGNAYFFQ 313 (520)
Q Consensus 250 eLKkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~------~krdeay~~i~~LRkerde~n~~f~~ 313 (520)
.++.+++.+...| ......++..|..|........ ....-.-.....|+..+-+.+..|-.
T Consensus 47 ~~~~~l~~l~~~i---~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~ 113 (127)
T 1ez3_A 47 KTKEELEELMSDI---KKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNA 113 (127)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555433 3333444555555544433211 00011123345666666666666654
No 162
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.59 E-value=2.6e+02 Score=21.31 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010022 252 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE 288 (520)
Q Consensus 252 Kkeldalr~kIkel~~k~~al~~ei~~LqeEl~al~~ 288 (520)
+..++.+..+...|......+..++..|+.++..+..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=20.31 E-value=5.7e+02 Score=24.39 Aligned_cols=122 Identities=16% Similarity=0.256 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHhhccchhh
Q 010022 173 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQE-SMGKKE-DIQDQVKLMGSDLDG 250 (520)
Q Consensus 173 fkSveEID~rI~~LE~~IqhgSLsL~EEKklLkEIsqL~k~Rk~v~a~~~~~aki~e-s~~~ke-~iqeqiK~l~~eIde 250 (520)
..++.+|+..-..|+.-... -|+.+..||-.|+++-..+.. |...+.+.+ -+...+ .+++....+..+ ..
T Consensus 92 g~~~~di~~~W~~Le~ae~e------Re~aL~~el~RlerLe~La~k-f~rka~~~e~~L~~~~~~L~~d~~~l~~~-~a 163 (235)
T 2odv_A 92 GYHPLDVEKEWGKLHVAILE------REKQLRSEFERLEALQRIVTK-LQMEAGLAEEQLNQADALLQSDVRLLAAG-KV 163 (235)
T ss_dssp TCSHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTT-CC
T ss_pred CCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcchh-HH
Confidence 56799999999999986554 456666666666555443222 333332222 111111 121111222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 010022 251 VKKESQAVWAKISHLEGKVKALDEEIEALQQ----EVNDVAEKRDKAFANIKELRKQ 303 (520)
Q Consensus 251 LKkeldalr~kIkel~~k~~al~~ei~~Lqe----El~al~~krdeay~~i~~LRke 303 (520)
+ +...++...|..+.+.+..+....+.|.. +.+.++.....+...+..|+..
T Consensus 164 ~-k~~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~ 219 (235)
T 2odv_A 164 P-QRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTE 219 (235)
T ss_dssp C-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22555655555555555555555554432 3344444444444444444443
No 164
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.27 E-value=1.9e+02 Score=21.03 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010022 276 IEALQQE 282 (520)
Q Consensus 276 i~~LqeE 282 (520)
|+.||..
T Consensus 25 I~~lqkK 31 (42)
T 2l5g_B 25 ISKLKKK 31 (42)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
Done!