BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010023
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/414 (46%), Positives = 277/414 (66%), Gaps = 17/414 (4%)
Query: 20 IIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPL 79
+I F+ ++ NA +VQ++TL+ IL +N YL+ G + +A + E + S+VPL
Sbjct: 19 VIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQN-CG----LNGNATDPEEAFKSMVPL 73
Query: 80 ASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRL 139
+ +LEPYI+R+ DGDT+ +LT P+ +SLSSGT++GR K++PFT + TLQ+FR
Sbjct: 74 VTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRT 133
Query: 140 AAAYRSRVYPIREGGRILEFIYSSKQFXXXXXXXXXXXXXHYYASEEFKIKQEKTKSFTC 199
A A+R+R +PI + G+ L+FI+SSKQ+ + Y + FK + S +C
Sbjct: 134 AFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSC 193
Query: 200 SPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVRE 259
SP+EVI S + Q+ YCHLL G+ F DQV+++ + FA+ +V AF FE+ W++I D+++
Sbjct: 194 SPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKD 253
Query: 260 GSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSI 319
G L S+RIT+P +R A+ ++P P LA I C L +W+GL+P L+PNAKYVY I
Sbjct: 254 GVL-SNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLS--NWYGLIPALFPNAKYVYGI 310
Query: 320 MTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFI 379
MTGSM+ Y+ KLRHYAGDLPLVS DYGS+E WI NV P L PE+ TFAVIP YFEF+
Sbjct: 311 MTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFL 370
Query: 380 PIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEV 433
P+ + E++PV L+QVK+G+EYE+V+T++ GLYRYRLGDVV+V
Sbjct: 371 PVSETGEG---------EEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKV 415
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 435 VLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTP 494
VL CC+ +D +F+D GYV SR+ +IG LEL +V +G FR I ++F+G G++ QFK P
Sbjct: 495 VLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMP 554
Query: 495 RCT--SNQVLVRILNDWTIKRFHSTAY 519
RC SN +++IL + + + STA+
Sbjct: 555 RCVKPSNAKVLQILCENVVSSYFSTAF 581
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 240 bits (612), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/408 (34%), Positives = 212/408 (51%), Gaps = 22/408 (5%)
Query: 27 ISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLE 86
++ N +Q L I+ N EYL++ L +D + E L+ VP+ S+ D++
Sbjct: 24 LTSNVKSIQDNLLEEIITPNTKTEYLQRFL-------IDRFDKE-LFKKNVPIVSYEDIK 75
Query: 87 PYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSR 146
PY+ R+ +G+++ +++ IT LSSGT+ G QK +P+ I+ L ++
Sbjct: 76 PYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITK 135
Query: 147 VYPIREGGRILEFIYSSKQFXXXXXXXXXXXXXHYYASEEFKIKQEKTKSFTCSPEEVIS 206
E G+ + F+++ ++ Y+ S+ FK + SP+EVI
Sbjct: 136 HVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVIL 195
Query: 207 SGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSR 266
+S YCHLL GL D+V S FA +V+A + W+++C ++R G LS+
Sbjct: 196 CPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWV 255
Query: 267 ITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQH 326
L L P+P LA IE C + W G+V +LWPN KY+ +++TGSM
Sbjct: 256 TDLGCQNSVSLVLGGPRPELADTIEEICNQNS---WKGIVKRLWPNTKYIETVVTGSMGQ 312
Query: 327 YLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386
Y+ L +Y DLPLVS YGS+E+ G+N+DP PEDV++ +P SYFEFIP+
Sbjct: 313 YVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMD--GG 370
Query: 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA 434
D N +D L VKLG YE V+T+F GLYR R+GD+V V
Sbjct: 371 DKNDVVD---------LEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVT 409
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 436 LNQCCHEMDVSFVDPGYVVSR-RTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTP 494
L+ CC M+ S +D Y R + SIGPLE+ +V++G F ++D+F+ GA+ Q+KTP
Sbjct: 500 LSTCCLVMEES-LDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTP 558
Query: 495 RCTSNQVLVRILNDWTIKRFHS 516
RC + +++L + +F S
Sbjct: 559 RCIKSGKALQVLETCVVAKFFS 580
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 234 bits (598), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 223/420 (53%), Gaps = 21/420 (5%)
Query: 17 ECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSL 76
+ +++ E ++ NA VQ L IL +N + EYLK+ ++ + + S
Sbjct: 19 DAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRF-------KLEGSTVRETFKSK 71
Query: 77 VPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQI 136
+P+ + DL+P IQRIA+GD +++L+ PI++ SSGT+ G +K +P + +
Sbjct: 72 IPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQML 131
Query: 137 FRLAAAYRSRVYPIREGGRILEFIYSSKQFXXXXXXXXXXXXXHYYASEEFKIKQEKTKS 196
+ L + P + G+ L F++ + YY SE FK + +
Sbjct: 132 YSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYN 191
Query: 197 FTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICID 256
SP E I + QS Y +L G++ QV + + FA +++A + W + D
Sbjct: 192 VYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHD 251
Query: 257 VREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYV 316
+R G+LS +IT P +R V + P P LA + C K +W G++ ++WPN KY+
Sbjct: 252 IRTGTLSP-KITDPSVRNCVAGVLKPDPELADLVAGECSKD---NWEGIITRIWPNTKYL 307
Query: 317 YSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYF 376
I+TG+M Y+ L +Y+G LPL Y S+E + G+N++P P +V++ ++P +YF
Sbjct: 308 DVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYF 367
Query: 377 EFIPIHRRKQDCNSAIDDFIEDEP---VPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEV 433
EF+P H +S+I D P V L+ V++G+EYE+V+T++ GLYRYR+GD++ V
Sbjct: 368 EFLP-HE-----HSSI-PLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRV 420
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 435 VLNQCCHEMDVSFVDPGYVVSR-RTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKT 493
+L QCC M+ S ++ Y R NSIGPLE+ +VK G F ++DY + GA+++Q+K
Sbjct: 505 LLGQCCLAMEES-LNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKV 563
Query: 494 PRCTSNQVLVRILNDWTIKRFHSTA 518
PRC + ++ +L+ + S A
Sbjct: 564 PRCVNFTPIMELLDSRVVSSHFSPA 588
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 231 bits (590), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/408 (34%), Positives = 207/408 (50%), Gaps = 22/408 (5%)
Query: 27 ISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLE 86
++ N +Q L I+ N EYL++ L +D + E L+ VP+ S+ D++
Sbjct: 24 LTSNVKSIQDNLLEEIITPNTKTEYLQRFL-------IDRFDKE-LFKKNVPIVSYEDIK 75
Query: 87 PYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSR 146
PY+ R+ +G+++ +++ IT LSSGT+ G QK P+ I+ L ++
Sbjct: 76 PYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYDLRXQVITK 135
Query: 147 VYPIREGGRILEFIYSSKQFXXXXXXXXXXXXXHYYASEEFKIKQEKTKSFTCSPEEVIS 206
E G+ F+++ ++ Y+ S+ FK + SP+EVI
Sbjct: 136 HVKGVEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVIL 195
Query: 207 SGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSR 266
+S YCHLL GL D+V S FA V+A + W+++C ++R G LS+
Sbjct: 196 CPNNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGHLSNWV 255
Query: 267 ITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQH 326
L L P+P LA IE C + W G+V +LWPN KY+ +++TGS
Sbjct: 256 TDLGCQNSVSLVLGGPRPELADTIEEICNQNS---WKGIVKRLWPNTKYIETVVTGSXGQ 312
Query: 327 YLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386
Y+ L +Y DLPLVS YGS+E+ G+N+DP PEDV++ P SYFEFIP
Sbjct: 313 YVPXLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXD--GG 370
Query: 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA 434
D N +D L VKLG YE V+T+F GLYR R+GD+V V
Sbjct: 371 DKNDVVD---------LEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVT 409
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 436 LNQCCHEMDVSFVDPGYVVSR-RTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTP 494
L+ CC + S +D Y R + SIGPLE+ +V++G F + D+F+ GA+ Q+KTP
Sbjct: 500 LSTCCLVXEES-LDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLXDFFISQGASTGQYKTP 558
Query: 495 RCTSNQVLVRILNDWTIKRFHS 516
RC + +++L + +F S
Sbjct: 559 RCIKSGKALQVLETCVVAKFFS 580
>pdb|3EVY|A Chain A, Crystal Structure Of A Fragment Of A Putative Type I
Restriction Enzyme R Protein From Bacteroides Fragilis
pdb|3EVY|B Chain B, Crystal Structure Of A Fragment Of A Putative Type I
Restriction Enzyme R Protein From Bacteroides Fragilis
Length = 239
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 270 PKMRKAVLDTISPKPYLASKI 290
PK RKAVLDT+ P L SKI
Sbjct: 143 PKDRKAVLDTMDSNPELRSKI 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,176,063
Number of Sequences: 62578
Number of extensions: 568198
Number of successful extensions: 1162
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 12
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)