Query 010023
Match_columns 520
No_of_seqs 145 out of 600
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 20:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02620 indole-3-acetic acid- 100.0 8E-120 2E-124 978.7 45.1 495 13-520 17-600 (612)
2 PLN02247 indole-3-acetic acid- 100.0 5E-117 1E-121 959.0 45.4 496 11-520 4-597 (606)
3 PLN02249 indole-3-acetic acid- 100.0 2E-109 3E-114 907.8 45.0 489 8-519 11-588 (597)
4 PF03321 GH3: GH3 auxin-respon 100.0 9E-104 2E-108 860.1 33.7 441 20-503 2-527 (528)
5 COG1541 PaaK Coenzyme F390 syn 99.8 2.6E-18 5.6E-23 180.8 16.1 319 28-472 20-384 (438)
6 TIGR03335 F390_ftsA coenzyme F 99.7 2.2E-17 4.7E-22 177.8 14.5 284 29-434 12-309 (445)
7 TIGR02304 aden_form_hyp probab 99.7 7.2E-16 1.6E-20 164.8 15.6 266 28-442 21-312 (430)
8 TIGR02155 PA_CoA_ligase phenyl 99.7 2.1E-15 4.5E-20 160.9 18.0 94 29-132 6-102 (422)
9 PRK06334 long chain fatty acid 97.9 0.00055 1.2E-08 75.5 18.3 100 310-434 298-421 (539)
10 PRK09274 peptide synthase; Pro 97.8 0.00076 1.6E-08 74.2 18.0 38 310-351 287-328 (552)
11 PF00501 AMP-binding: AMP-bind 97.7 0.0005 1.1E-08 72.4 14.5 102 309-434 275-399 (417)
12 PRK04813 D-alanine--poly(phosp 97.7 0.00042 9.1E-09 74.8 14.1 39 310-351 259-299 (503)
13 PRK13295 cyclohexanecarboxylat 97.7 0.00052 1.1E-08 75.6 14.0 98 310-434 311-430 (547)
14 PRK06187 long-chain-fatty-acid 97.6 0.0012 2.7E-08 71.3 15.7 29 103-132 166-194 (521)
15 PRK07529 AMP-binding domain pr 97.6 0.0017 3.7E-08 73.2 17.3 103 310-434 332-456 (632)
16 TIGR01733 AA-adenyl-dom amino 97.6 0.0019 4.1E-08 67.6 16.2 39 310-351 233-273 (408)
17 PRK07788 acyl-CoA synthetase; 97.6 0.0015 3.2E-08 71.9 16.0 98 310-434 322-438 (549)
18 TIGR03205 pimA dicarboxylate-- 97.6 0.0021 4.6E-08 70.6 17.1 27 104-131 192-218 (541)
19 PRK06060 acyl-CoA synthetase; 97.6 0.00096 2.1E-08 76.1 14.9 99 310-434 259-376 (705)
20 PRK07638 acyl-CoA synthetase; 97.5 0.0017 3.7E-08 70.2 15.3 94 318-434 258-372 (487)
21 PLN02574 4-coumarate--CoA liga 97.5 0.0014 3E-08 72.5 14.9 100 310-434 318-441 (560)
22 PRK05677 long-chain-fatty-acid 97.5 0.0026 5.6E-08 70.3 16.9 98 310-434 325-444 (562)
23 PRK06145 acyl-CoA synthetase; 97.5 0.0012 2.6E-08 71.4 13.7 98 311-434 264-384 (497)
24 PRK05605 long-chain-fatty-acid 97.5 0.0027 5.9E-08 70.2 16.4 100 310-434 335-456 (573)
25 PRK06155 crotonobetaine/carnit 97.5 0.0043 9.4E-08 68.4 17.8 97 311-434 294-411 (542)
26 PRK04319 acetyl-CoA synthetase 97.5 0.0045 9.7E-08 68.6 17.8 25 106-131 207-231 (570)
27 PRK09088 acyl-CoA synthetase; 97.5 0.0018 3.8E-08 70.0 14.3 26 105-131 136-161 (488)
28 PRK00174 acetyl-CoA synthetase 97.5 0.0028 6.1E-08 71.3 16.3 24 106-130 247-270 (637)
29 PRK06164 acyl-CoA synthetase; 97.5 0.0044 9.5E-08 67.9 17.4 28 104-132 181-208 (540)
30 PRK07786 long-chain-fatty-acid 97.5 0.0012 2.6E-08 72.6 12.9 94 318-434 294-410 (542)
31 PRK07514 malonyl-CoA synthase; 97.4 0.0042 9.2E-08 67.2 16.8 101 308-434 266-388 (504)
32 PRK07656 long-chain-fatty-acid 97.4 0.0024 5.2E-08 69.1 14.7 30 102-132 164-193 (513)
33 PRK08316 acyl-CoA synthetase; 97.4 0.0037 7.9E-08 67.8 16.1 28 103-131 170-197 (523)
34 PRK05852 acyl-CoA synthetase; 97.4 0.005 1.1E-07 67.5 17.1 25 107-132 179-203 (534)
35 PRK10946 entE enterobactin syn 97.4 0.0064 1.4E-07 66.8 17.8 28 104-132 182-209 (536)
36 PRK10252 entF enterobactin syn 97.4 0.0011 2.3E-08 80.6 12.6 28 104-132 598-625 (1296)
37 PRK06839 acyl-CoA synthetase; 97.4 0.002 4.4E-08 69.4 13.4 25 105-130 150-174 (496)
38 COG1022 FAA1 Long-chain acyl-C 97.4 0.0016 3.5E-08 72.9 12.3 100 285-434 342-460 (613)
39 TIGR01734 D-ala-DACP-lig D-ala 97.3 0.004 8.7E-08 67.3 14.9 40 309-351 256-297 (502)
40 PRK12467 peptide synthase; Pro 97.3 0.0025 5.4E-08 85.6 15.4 30 103-133 655-684 (3956)
41 TIGR02188 Ac_CoA_lig_AcsA acet 97.3 0.0062 1.3E-07 68.3 16.4 24 106-130 238-261 (625)
42 PRK08180 feruloyl-CoA synthase 97.3 0.0028 6E-08 71.1 13.3 27 104-131 209-235 (614)
43 PRK12583 acyl-CoA synthetase; 97.3 0.0055 1.2E-07 67.3 15.4 27 105-132 202-228 (558)
44 TIGR03098 ligase_PEP_1 acyl-Co 97.3 0.0091 2E-07 64.7 16.8 26 106-132 163-188 (515)
45 PRK08633 2-acyl-glycerophospho 97.3 0.0044 9.6E-08 74.2 15.6 28 104-132 782-809 (1146)
46 PRK07867 acyl-CoA synthetase; 97.3 0.003 6.4E-08 69.5 12.9 26 105-131 153-178 (529)
47 PLN02860 o-succinylbenzoate-Co 97.2 0.0041 8.9E-08 68.9 14.0 38 310-351 287-327 (563)
48 PRK07059 Long-chain-fatty-acid 97.2 0.0081 1.8E-07 66.2 16.0 27 104-131 204-230 (557)
49 PRK13382 acyl-CoA synthetase; 97.2 0.0053 1.2E-07 67.5 14.4 98 310-434 311-427 (537)
50 TIGR03208 cyc_hxne_CoA_lg cycl 97.2 0.0039 8.4E-08 68.4 13.3 27 104-131 195-221 (538)
51 PLN02614 long-chain acyl-CoA s 97.2 0.012 2.6E-07 67.0 17.2 28 104-132 223-250 (666)
52 PRK08974 long-chain-fatty-acid 97.2 0.01 2.2E-07 65.5 16.2 29 103-132 205-233 (560)
53 PRK07787 acyl-CoA synthetase; 97.2 0.011 2.4E-07 63.7 16.1 26 106-132 130-155 (471)
54 PLN02736 long-chain acyl-CoA s 97.2 0.0063 1.4E-07 68.8 14.6 27 104-131 221-247 (651)
55 PRK08314 long-chain-fatty-acid 97.1 0.0059 1.3E-07 66.9 13.9 27 105-132 191-217 (546)
56 COG1021 EntE Peptide arylation 97.1 0.0021 4.6E-08 67.3 9.4 30 405-434 379-425 (542)
57 PRK12467 peptide synthase; Pro 97.1 0.0058 1.3E-07 82.2 15.7 30 103-133 3236-3265(3956)
58 PRK12316 peptide synthase; Pro 97.1 0.0034 7.5E-08 86.0 13.8 28 104-132 4694-4721(5163)
59 PRK08279 long-chain-acyl-CoA s 97.1 0.011 2.4E-07 66.0 15.5 28 104-132 199-226 (600)
60 PLN02330 4-coumarate--CoA liga 97.1 0.013 2.8E-07 64.5 15.7 26 105-131 185-210 (546)
61 PRK07470 acyl-CoA synthetase; 97.1 0.016 3.5E-07 63.2 16.3 28 103-131 162-189 (528)
62 PRK12492 long-chain-fatty-acid 97.0 0.03 6.6E-07 61.9 18.3 25 106-131 209-233 (562)
63 TIGR03443 alpha_am_amid L-amin 97.0 0.0053 1.1E-07 75.4 13.3 28 104-132 415-442 (1389)
64 PTZ00237 acetyl-CoA synthetase 97.0 0.012 2.6E-07 66.7 15.1 23 106-129 256-278 (647)
65 PRK13388 acyl-CoA synthetase; 97.0 0.0088 1.9E-07 65.9 13.6 29 102-131 148-176 (540)
66 PRK08751 putative long-chain f 97.0 0.013 2.9E-07 64.5 14.8 28 104-132 208-235 (560)
67 PRK10524 prpE propionyl-CoA sy 97.0 0.015 3.2E-07 65.3 15.4 25 105-130 234-258 (629)
68 PRK12406 long-chain-fatty-acid 97.0 0.014 3.1E-07 63.4 14.7 97 311-434 271-390 (509)
69 PLN02861 long-chain-fatty-acid 97.0 0.023 5E-07 64.5 16.8 26 105-131 221-246 (660)
70 PRK12316 peptide synthase; Pro 96.9 0.0082 1.8E-07 82.5 14.9 30 102-132 653-682 (5163)
71 PRK03640 O-succinylbenzoic aci 96.9 0.039 8.4E-07 59.4 17.2 25 105-130 142-166 (483)
72 PRK13383 acyl-CoA synthetase; 96.9 0.02 4.4E-07 62.5 15.1 98 310-434 291-407 (516)
73 PRK12582 acyl-CoA synthetase; 96.8 0.0066 1.4E-07 68.3 10.7 27 104-131 220-246 (624)
74 PLN02387 long-chain-fatty-acid 96.8 0.013 2.9E-07 66.9 13.0 27 104-131 250-276 (696)
75 PTZ00342 acyl-CoA synthetase; 96.7 0.032 7E-07 64.5 16.0 27 104-131 304-330 (746)
76 PRK08315 AMP-binding domain pr 96.7 0.04 8.7E-07 60.6 16.1 27 104-131 199-225 (559)
77 PRK06710 long-chain-fatty-acid 96.7 0.023 5E-07 62.7 14.2 26 105-131 207-232 (563)
78 TIGR02316 propion_prpE propion 96.7 0.044 9.5E-07 61.7 16.4 26 104-130 232-257 (628)
79 TIGR02275 DHB_AMP_lig 2,3-dihy 96.7 0.038 8.1E-07 60.5 15.5 28 104-132 183-210 (527)
80 PRK08308 acyl-CoA synthetase; 96.7 0.018 3.9E-07 61.0 12.4 26 106-132 103-128 (414)
81 PRK05857 acyl-CoA synthetase; 96.7 0.02 4.3E-07 63.1 12.9 27 104-131 169-195 (540)
82 PRK05691 peptide synthase; Val 96.5 0.07 1.5E-06 72.8 18.9 28 104-132 2333-2360(4334)
83 TIGR01923 menE O-succinylbenzo 96.5 0.022 4.7E-07 60.3 11.6 29 103-132 110-138 (436)
84 COG0318 CaiC Acyl-CoA syntheta 96.5 0.048 1E-06 60.3 14.7 36 312-351 292-330 (534)
85 PRK06188 acyl-CoA synthetase; 96.5 0.029 6.4E-07 61.2 12.6 26 106-132 170-195 (524)
86 PLN02654 acetate-CoA ligase 96.4 0.063 1.4E-06 61.1 15.6 25 105-130 276-300 (666)
87 PLN02430 long-chain-fatty-acid 96.4 0.11 2.3E-06 59.2 17.1 28 104-132 220-247 (660)
88 TIGR02262 benz_CoA_lig benzoat 96.4 0.087 1.9E-06 57.2 15.5 28 104-132 161-188 (508)
89 PRK08008 caiC putative crotono 96.3 0.13 2.8E-06 55.9 16.8 27 104-131 173-199 (517)
90 PRK05691 peptide synthase; Val 96.3 0.067 1.4E-06 73.0 16.9 40 310-353 1387-1429(4334)
91 PRK07769 long-chain-fatty-acid 96.3 0.15 3.3E-06 57.3 17.4 27 104-131 180-206 (631)
92 PLN03051 acyl-activating enzym 96.3 0.091 2E-06 57.3 15.2 26 104-130 119-144 (499)
93 PLN02246 4-coumarate--CoA liga 96.3 0.044 9.5E-07 60.1 12.7 27 104-131 179-205 (537)
94 PRK05620 long-chain-fatty-acid 96.2 0.22 4.9E-06 55.2 17.9 26 104-130 181-206 (576)
95 PRK06087 short chain acyl-CoA 96.2 0.085 1.8E-06 58.0 14.4 26 105-131 188-213 (547)
96 PTZ00216 acyl-CoA synthetase; 96.0 0.21 4.6E-06 57.1 16.7 29 103-132 263-291 (700)
97 COG0365 Acs Acyl-coenzyme A sy 95.9 0.23 5E-06 55.0 16.1 95 310-434 289-407 (528)
98 PRK08276 long-chain-fatty-acid 95.9 0.11 2.4E-06 56.3 13.6 24 106-130 142-165 (502)
99 PRK07008 long-chain-fatty-acid 95.9 0.11 2.3E-06 57.2 13.5 27 103-130 175-201 (539)
100 PLN03102 acyl-activating enzym 95.9 0.097 2.1E-06 58.3 13.2 24 106-130 188-211 (579)
101 PRK08043 bifunctional acyl-[ac 95.6 0.23 5.1E-06 56.9 15.4 26 105-131 366-391 (718)
102 PRK03584 acetoacetyl-CoA synth 95.6 0.33 7.1E-06 54.9 16.1 24 106-130 265-288 (655)
103 PRK06018 putative acyl-CoA syn 95.1 0.48 1E-05 52.1 15.1 36 310-351 293-331 (542)
104 PRK06814 acylglycerophosphoeth 95.1 0.29 6.3E-06 59.0 14.4 27 104-131 793-819 (1140)
105 KOG1179 Very long-chain acyl-C 95.0 0.059 1.3E-06 59.0 7.3 31 329-360 373-404 (649)
106 PRK07768 long-chain-fatty-acid 94.9 1.1 2.3E-05 49.3 17.2 28 103-131 151-178 (545)
107 PRK05850 acyl-CoA synthetase; 94.9 0.62 1.3E-05 51.6 15.3 26 105-131 161-186 (578)
108 TIGR01217 ac_ac_CoA_syn acetoa 94.8 0.28 6.1E-06 55.6 12.5 23 106-129 266-288 (652)
109 KOG1180 Acyl-CoA synthetase [L 93.1 1.6 3.4E-05 48.2 13.2 201 282-511 388-621 (678)
110 KOG1176 Acyl-CoA synthetase [L 90.7 7.1 0.00015 43.6 15.5 100 310-434 298-419 (537)
111 PRK13390 acyl-CoA synthetase; 87.5 3.8 8.3E-05 44.3 10.5 36 311-351 270-308 (501)
112 PRK13391 acyl-CoA synthetase; 87.2 2.3 5E-05 46.2 8.7 35 312-351 276-313 (511)
113 KOG1256 Long-chain acyl-CoA sy 87.2 1.8 3.9E-05 49.1 7.7 85 37-132 190-282 (691)
114 PF04443 LuxE: Acyl-protein sy 87.1 2.7 5.9E-05 44.5 8.7 83 32-131 30-115 (365)
115 PRK07798 acyl-CoA synthetase; 86.6 3.2 6.9E-05 44.9 9.3 36 311-350 296-334 (533)
116 PRK07868 acyl-CoA synthetase; 84.9 3.3 7.1E-05 49.7 9.0 111 311-434 720-847 (994)
117 TIGR02372 4_coum_CoA_lig 4-cou 83.1 1.8 3.8E-05 46.1 5.2 53 68-132 70-122 (386)
118 PRK07824 O-succinylbenzoic aci 73.1 3 6.6E-05 43.0 3.3 26 106-132 37-62 (358)
119 PRK07445 O-succinylbenzoic aci 71.7 6.7 0.00014 42.3 5.6 27 104-131 120-146 (452)
120 PRK07445 O-succinylbenzoic aci 71.0 3.9 8.4E-05 44.2 3.6 35 311-351 230-267 (452)
121 PRK06178 acyl-CoA synthetase; 69.0 22 0.00048 39.2 9.1 27 104-131 209-235 (567)
122 PRK05851 long-chain-fatty-acid 66.4 20 0.00044 39.2 8.1 27 105-132 153-179 (525)
123 PRK09029 O-succinylbenzoic aci 64.9 5.9 0.00013 42.3 3.4 28 104-132 135-162 (458)
124 KOG1175 Acyl-CoA synthetase [L 62.1 1.2E+02 0.0026 34.6 13.0 41 470-510 584-624 (626)
125 PRK05851 long-chain-fatty-acid 62.0 7.1 0.00015 42.7 3.5 30 405-434 366-407 (525)
126 PRK12476 putative fatty-acid-- 56.2 30 0.00066 38.7 7.3 27 104-131 193-219 (612)
127 PRK08162 acyl-CoA synthetase; 55.9 95 0.0021 33.8 11.0 23 107-130 185-207 (545)
128 PRK12476 putative fatty-acid-- 54.3 13 0.00028 41.6 4.0 33 318-351 322-361 (612)
129 KOG1177 Long chain fatty acid 50.6 12 0.00027 40.8 2.8 85 36-130 165-259 (596)
130 PRK09192 acyl-CoA synthetase; 50.5 13 0.00028 41.2 3.2 27 105-132 177-203 (579)
131 PLN03052 acetate--CoA ligase; 48.0 14 0.00031 42.6 3.1 25 105-130 357-381 (728)
132 PRK06178 acyl-CoA synthetase; 47.0 16 0.00035 40.2 3.2 27 324-351 340-366 (567)
133 PRK07798 acyl-CoA synthetase; 45.4 11 0.00025 40.6 1.6 23 108-131 167-189 (533)
134 PLN02479 acetate-CoA ligase 44.9 13 0.00028 41.2 2.0 22 108-130 199-220 (567)
135 PRK09192 acyl-CoA synthetase; 44.2 84 0.0018 34.8 8.4 30 405-434 405-450 (579)
136 PLN03052 acetate--CoA ligase; 44.1 75 0.0016 36.8 8.1 38 310-351 470-510 (728)
137 PRK09029 O-succinylbenzoic aci 38.8 63 0.0014 34.4 6.1 35 312-352 241-278 (458)
138 PRK08162 acyl-CoA synthetase; 36.4 19 0.00042 39.3 1.7 30 318-350 301-332 (545)
139 cd04473 S1_RecJ_like S1_RecJ_l 29.7 66 0.0014 25.7 3.4 35 400-434 8-62 (77)
140 COG2026 RelE Cytotoxic transla 26.9 38 0.00082 28.3 1.5 22 412-434 43-64 (90)
141 PF12690 BsuPI: Intracellular 26.4 39 0.00084 27.9 1.5 22 407-428 21-44 (82)
142 cd05830 Sortase_D_5 Sortase D 26.2 53 0.0011 29.5 2.5 31 402-434 62-92 (137)
143 PRK13390 acyl-CoA synthetase; 25.6 35 0.00076 36.8 1.4 19 107-126 151-169 (501)
144 PF07897 DUF1675: Protein of u 24.1 52 0.0011 33.7 2.2 21 422-447 242-262 (284)
145 cd05828 Sortase_D_4 Sortase D 23.8 72 0.0016 28.2 2.8 31 402-434 58-88 (127)
146 cd05829 Sortase_E Sortase E (S 23.1 72 0.0016 29.0 2.8 31 402-434 69-100 (144)
147 cd06166 Sortase_D_5 Sortase D 22.9 63 0.0014 28.6 2.3 32 401-434 60-91 (126)
148 cd04866 LigD_Pol_like_3 LigD_P 22.2 80 0.0017 31.2 3.0 49 100-149 121-171 (223)
149 TIGR02778 ligD_pol DNA polymer 21.1 78 0.0017 31.8 2.7 49 100-149 142-191 (245)
150 PF12791 RsgI_N: Anti-sigma fa 20.7 1.1E+02 0.0023 22.9 2.9 29 406-434 1-35 (56)
151 COG3764 SrtA Sortase (surface 20.6 70 0.0015 31.3 2.2 33 400-434 129-161 (210)
No 1
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=8.5e-120 Score=978.72 Aligned_cols=495 Identities=36% Similarity=0.676 Sum_probs=464.0
Q ss_pred CCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHHH
Q 010023 13 GNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRI 92 (520)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier~ 92 (520)
+++.++..++.++..++||.++|+++|++||++|++|+|||+| +|++|+++++||++|||++|||++|||+||
T Consensus 17 ~~~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~-------~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri 89 (612)
T PLN02620 17 LAEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRH-------GLNGRTDRETFKKVMPVITYEDIQPDINRI 89 (612)
T ss_pred cccchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhc-------CCCCCCCHHHHHHhCCCccHHHhHHHHHHH
Confidence 4455577789999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hcCCCCCcccccccceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEeecCccccccCC
Q 010023 93 ADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTKGG 171 (520)
Q Consensus 93 ~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~~G 171 (520)
++||.++|||++||.+|++|||||+|++|+||+|+++++.++.++.+|..++++.+| +. .||.|||++...+.+|++|
T Consensus 90 ~~Ge~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~-~Gk~~~~~~~~~~~~T~~G 168 (612)
T PLN02620 90 ANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLE-KGKGMYFLFIKSEAKTPGG 168 (612)
T ss_pred HcCCCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcc-cCcEEEEEecccCccCCCC
Confidence 999977999999999999999999889999999999999988889999999999888 77 8999999999999999999
Q ss_pred ceEecCccccccchhHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHHHHHHHHH
Q 010023 172 LTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQ 251 (520)
Q Consensus 172 ip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~~l~~~w~ 251 (520)
+|+|++|+.++++.+|+.++......|++|.+++.++|..|++||||||+|+++++|..|+++|+++|+.++++|+++|+
T Consensus 169 ip~g~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~ 248 (612)
T PLN02620 169 LVARPVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWT 248 (612)
T ss_pred cccccccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHH
Confidence 99999999999999999888777778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHHHH
Q 010023 252 DICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKL 331 (520)
Q Consensus 252 ~l~~dI~~g~~~~~~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~~~~y~~~l 331 (520)
+||+||++|+++ ++++++++|++|.+.++|||++|+.|+++|.+ + +|.|++++|||||++|+||+||+|++|+++|
T Consensus 249 ~L~~DI~~G~ls-~~itd~~~R~av~~~L~p~pelA~~i~~~c~~-~--~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L 324 (612)
T PLN02620 249 LLCRDIRTGTID-SQITDPSVREAVMKILKPDPKLADFVEAECRK-E--SWQGIITRLWPNTKYVDVIVTGTMSQYIPTL 324 (612)
T ss_pred HHHHHHhcCCCC-ccCCCHHHHHHHHhhcCCCHHHHHHHHHHhcc-c--cccCcHHHhCCCCcEEEEECCCCHHHHHHHH
Confidence 999999999999 88999999999999999999999999999998 5 8999999999999999999999999999999
Q ss_pred HhHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCC-----CCCCCCCCCCCccccCCC
Q 010023 332 RHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDC-----NSAIDDFIEDEPVPLSQV 406 (520)
Q Consensus 332 ~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~-----~~~~~~~~~~~~l~l~el 406 (520)
+.|+|++|+++.+|+||||+||||++|.|+++.++|+|+|+++||||||+++.+..- +...+..+++++|+++||
T Consensus 325 ~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev 404 (612)
T PLN02620 325 DYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDV 404 (612)
T ss_pred HHHcCCCccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHc
Confidence 999999999999999999999999999999988999999999999999987532100 000111346789999999
Q ss_pred CCCCeEEEEEeecccccceecCCeEeee----------------------------------------------------
Q 010023 407 KLGQEYEIVLTSFTGLYRYRLGDVVEVA---------------------------------------------------- 434 (520)
Q Consensus 407 e~G~~YelViTt~~GLyRYriGDvVrv~---------------------------------------------------- 434 (520)
|+|++|||||||.+||||||+||||+|+
T Consensus 405 ~~G~~YelvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dy 484 (612)
T PLN02620 405 KLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEY 484 (612)
T ss_pred cCCCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeE
Confidence 9999999999999999999999999999
Q ss_pred ------------------------------hHHHHHhhhhccCCChhhHhhhhcC-CCCCcEEEEeccchHHHHHHHHHh
Q 010023 435 ------------------------------VLNQCCHEMDVSFVDPGYVVSRRTN-SIGPLELCIVKRGAFRMILDYFVG 483 (520)
Q Consensus 435 ------------------------------~l~~~c~~ld~~l~n~~Y~~~R~~g-~l~pl~v~iv~~g~F~~~~~~~~~ 483 (520)
++++||.++|++| |.+|+.+|..| +||||+|++|++|+|+++++++++
T Consensus 485 ts~~d~~~~PghYvl~~El~~~~~~~~~~~~l~~cc~~lE~~L-n~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~ 563 (612)
T PLN02620 485 TSYADTSTIPGHYVLFWELCLNGSTPIPPSVFEDCCLTIEESL-NSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAIS 563 (612)
T ss_pred EeccccCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHH
Confidence 4567888899998 99999999886 699999999999999999999999
Q ss_pred CCCCCCCCCCCcccCCHHHHHHHhhccccccccccCC
Q 010023 484 NGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAYC 520 (520)
Q Consensus 484 ~G~~~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~~~~ 520 (520)
+|++.+|||+|||+++++++++|+++|+++|||++++
T Consensus 564 ~G~s~~QyK~Pr~v~~~~~~~~l~~~v~~~~~s~~~~ 600 (612)
T PLN02620 564 LGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCP 600 (612)
T ss_pred cCCccccccCceEecCHHHHHHHHhhhheeeccccCC
Confidence 9999999999999999999999999999999999763
No 2
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=5.3e-117 Score=959.01 Aligned_cols=496 Identities=35% Similarity=0.651 Sum_probs=457.9
Q ss_pred CcCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHH
Q 010023 11 GYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQ 90 (520)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyie 90 (520)
.+.++.+++.++.++..++||.++|+++|++||++|++|+|||+| .+ +|+++++||++|||++|||++|||+
T Consensus 4 ~~~~~~~~~~~~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~~-------~~-~i~~~e~Fk~~VPv~~Yedl~pyI~ 75 (606)
T PLN02247 4 SYDPNDNEAGLKLLEDLTTNACQIQQQVLEEILTQNAGTEYLRSF-------LD-GESDKQSFKNKVPVVNYEDIKPCIE 75 (606)
T ss_pred ccCCcchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhhhhc-------Cc-cCCCHHHHHHhCCCccHHHhHHHHH
Confidence 344555678899999999999999999999999999999999988 45 8999999999999999999999999
Q ss_pred HHhcCCCCCcccccccceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEeecCcccccc
Q 010023 91 RIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTK 169 (520)
Q Consensus 91 r~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~ 169 (520)
||++||.+++++++||.+|++|||||+|++|+||+|+++++.+..++.+|..++++..| +. .||.|||++.+++.+|+
T Consensus 76 Ri~~Ge~~~llt~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~l~~~~~~~~~p~l~-~Gk~~~~~~~~~~~~T~ 154 (606)
T PLN02247 76 RIANGESSSIISAQPITELLTSSGTSGGQPKLMPSTAEELDRKTFFYNLLVPVMNKYVDGLD-QGKGMYLLFIKPEISTP 154 (606)
T ss_pred HHHcCCCCceeCCCCcceeeccCCCCCCceeEeeccHHHHHHHHHHHHHHHHHHHhcCCCcc-cCcEEEEEecCcCccCC
Confidence 99999965667799999999999999889999999999999888889999999999777 77 89999999999999999
Q ss_pred CCceEecCccccccchhHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHHHHHHH
Q 010023 170 GGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEEC 249 (520)
Q Consensus 170 ~Gip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~~l~~~ 249 (520)
+|+|+|++|+.++++.+|+.++......|++|.+++.++|..|++||||||+|++++++..|+++|+++++.++++|+++
T Consensus 155 ~Gip~g~~~t~y~~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~vl~v~svfa~s~l~a~~~Le~~ 234 (606)
T PLN02247 155 SGLMARPVLTSYYKSSNFRNRPFNRYNVYTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDH 234 (606)
T ss_pred CCcccccccchhhccccccccccccccceeCcHHhhcCCCHHHHHHHHHHHHhhccccccEEEEeccHHHHHHHHHHHHH
Confidence 99999999999999998887766545689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCcHHHHHhhhccC-CCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHH
Q 010023 250 WQDICIDVREGSLSSSRITLPKMRKAVLDTI-SPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYL 328 (520)
Q Consensus 250 w~~l~~dI~~g~~~~~~i~~~~~R~~l~~~l-~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~~~~y~ 328 (520)
|++||+||++|+++ +++++|++|+++.+.+ +|||++|++|+++|.+ + +|.|++++|||||++|+||+||+|++|+
T Consensus 235 we~L~~DI~~G~ls-~~it~p~~R~a~~~~l~~p~peLA~~l~~~c~~-~--~w~gi~~rLWP~lk~I~~~~tGsm~~Y~ 310 (606)
T PLN02247 235 WKELCSNIRTGCVS-DWITDPSCRNAVSSILSKPNSELADLIESECSG-K--SWEGIIKRLWPRTKYIEVIVTGSMAQYI 310 (606)
T ss_pred HHHHHHHHhcCCcc-cccCCHHHHHHHhhcccCCCHHHHHHHHHHhcc-c--CccccHHHhCCCCcEEEEECCCCHHHHH
Confidence 99999999999999 9999999999999998 6999999999999988 5 8999999999999999999999999999
Q ss_pred HHHHhHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccC-CCCCCC----C-----CCCC
Q 010023 329 KKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQD-CNSAID----D-----FIED 398 (520)
Q Consensus 329 ~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~-~~~~~~----~-----~~~~ 398 (520)
++|+.|+|++|+++.+|+||||+||||++|.++++.+.|+|+|+++||||||+++.+.+ .++... . .+++
T Consensus 311 ~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (606)
T PLN02247 311 PTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVDKNNGEVIHFVQCNGTDDDDDALKEDL 390 (606)
T ss_pred HHHHHHcCCCceecccccccceEEEeccCcCCCccCCceeecCCcEEEEEeecCCCcccccccccccccccccccccccC
Confidence 99999999999999999999999999999999888899999999999999998754310 000000 0 1356
Q ss_pred CccccCCCCCCCeEEEEEeecccccceecCCeEeee--------------------------------------------
Q 010023 399 EPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA-------------------------------------------- 434 (520)
Q Consensus 399 ~~l~l~ele~G~~YelViTt~~GLyRYriGDvVrv~-------------------------------------------- 434 (520)
.+|+++|||+|++|||||||.+||||||+||||+|+
T Consensus 391 ~~v~l~evk~G~~YelVvTt~~GLYRYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a~~~l~~ 470 (606)
T PLN02247 391 EIVDLVDVKVGHYYELVVTTFTGLYRYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEP 470 (606)
T ss_pred ceecHHHccCCCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHHHHhhcc
Confidence 799999999999999999999999999999999999
Q ss_pred -----------------------------------------hHHHHHhhhhccCCChhhHhhhhcC-CCCCcEEEEeccc
Q 010023 435 -----------------------------------------VLNQCCHEMDVSFVDPGYVVSRRTN-SIGPLELCIVKRG 472 (520)
Q Consensus 435 -----------------------------------------~l~~~c~~ld~~l~n~~Y~~~R~~g-~l~pl~v~iv~~g 472 (520)
+|++||.++|++| |.+|+.+|..| +||||+|++|++|
T Consensus 471 ~~~~l~d~ts~~d~~~~PghYvlf~El~~~~~~~~~~~~~~~l~~cc~~lE~~L-n~~Yr~~R~~~~~igPLeirvv~~G 549 (606)
T PLN02247 471 LGFLLTEYTSYADTSSIPGHYVLFWELKTRGSNDPPELDPKIMEQCCSTVEESL-DSVYRRCRKRDKSIGPLEIRVVKHG 549 (606)
T ss_pred cCeeeeeeecccccCCCCCceEEEEEeecCCCCccccchHHHHHHHHHHHHHHh-hHHHHHHhhccCcCCCcEEEEeCCC
Confidence 4667899999998 99999999885 9999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCcccCCHHHHHHHhhccccccccccCC
Q 010023 473 AFRMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAYC 520 (520)
Q Consensus 473 ~F~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~~~~ 520 (520)
+|++++++++++|++.+|||+|||+++++++++|+++|+++|||++++
T Consensus 550 tF~~l~~~~~~~G~s~~Q~K~Pr~v~~~~~~~~l~~~v~~~~~s~~~~ 597 (606)
T PLN02247 550 TFDALMDFCVSQGSSVNQYKTPRCIKSEEALKILDSRVIGRFFSKRVP 597 (606)
T ss_pred hHHHHHHHHHHcCCCcccccCceEecCHHHHHHHHhhhheeeccccCC
Confidence 999999999999999999999999999999999999999999999764
No 3
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=1.6e-109 Score=907.78 Aligned_cols=489 Identities=33% Similarity=0.649 Sum_probs=442.5
Q ss_pred CCCCcCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchH
Q 010023 8 NGNGYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEP 87 (520)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~p 87 (520)
|++-.....+.+.++.++..++||.++|+++|++||++|++|+|||+| ||++|+++++||++|||++|||++|
T Consensus 11 ~~~~~~~~~~~~~l~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~~-------gf~~i~~~~~F~~~VPv~~Yedl~p 83 (597)
T PLN02249 11 MASPTTSEKDVKALKFIEEMTRNPDSVQEKVLGEILSRNSNTEYLKRF-------DLNGAVDRKTFKSKVPVVTYEDLKT 83 (597)
T ss_pred ccCCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhc-------CCCCCCCHHHHHHhCCCccHHHhHH
Confidence 333333444467789999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhcCCCCCcccccccceeeccccCCCCccceeecChhhHHH--HHHHHHHHHHHHHhcCC-CCCCCcEEEEeecCc
Q 010023 88 YIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQT--TLQIFRLAAAYRSRVYP-IREGGRILEFIYSSK 164 (520)
Q Consensus 88 yier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~--~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~ 164 (520)
||+|+++||.++|||++||.+|++|||||+|++|+||+|+++++. +..++.+| ..+...| +. .||.|++++...
T Consensus 84 yIeRi~~Ge~~~vL~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~--~~~~~~~~l~-~Gk~l~~~~~~~ 160 (597)
T PLN02249 84 EIQRISNGDRSPILSSHPITEFLTSSGTSAGERKLMPTIEEDIDRRQLLGSLLMP--VMNLYVPGLD-KGKGLYFLFVKS 160 (597)
T ss_pred HHHHHHcCCCCceeCCCchhhhcccCCCCCCceeEEeccHHHHHHHHHHHHHHHH--HHhccCCccc-cCcEEEEEeccc
Confidence 999999998667999999999999999999999999999999983 44456666 3333356 76 899999999888
Q ss_pred cccccCCceEecCccccccchhHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHH
Q 010023 165 QFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFT 244 (520)
Q Consensus 165 ~~~t~~Gip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~ 244 (520)
+..|++|+|+|++++.++++..|+..+ +...|++|.+++.++|.++++||||||||++++++..|++.||+.++.+++
T Consensus 161 ~~~t~gG~p~~~~~~~~~~~~~f~~~~--~~~~~~~P~ev~~~~D~~~~~Y~~lL~gL~~~~~~~~i~~~~Ps~l~~~~~ 238 (597)
T PLN02249 161 ESKTSGGLPARPALTSYYKSDHFRTSD--YDNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFPSGLLRAIS 238 (597)
T ss_pred cccCCCCCccCcccccccccccccccc--ccccccCcHHhhcCCCHHHHHHHHHHHHHhhccccceEEEECcHHHHHHHH
Confidence 999999999999999877777775543 367899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCCcHHHHHhhhccC-CCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC
Q 010023 245 AFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTI-SPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS 323 (520)
Q Consensus 245 ~l~~~w~~l~~dI~~g~~~~~~i~~~~~R~~l~~~l-~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~ 323 (520)
+|+++|+++|+||++|+++ +++++|.+|..|..++ .|+|++|++++++|.+ . +|+|++++|||||++|+||+||+
T Consensus 239 ~l~~~weel~~dI~~g~~~-~~~~~~~~~~~v~~i~g~P~~~la~~i~~~~~~-~--~~~gii~~lWPnl~~i~~~~~G~ 314 (597)
T PLN02249 239 FLQNNWKELAQDISTGTLS-SKIFDPAIKNRMSKILNKPDQELAEFLIGVCSQ-E--NWEGIITKIWPNTKYLDVIVTGA 314 (597)
T ss_pred HHHHHHHHHHHHHHhCCCc-ccccchHHHHHHHhhcCCCCHHHHHHHHHHhcc-c--cccccHHHhCCCCCeEEEEecCC
Confidence 9999999999999999999 8899999999999888 6999999999999987 4 79999999999999999999999
Q ss_pred hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCcccc
Q 010023 324 MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPL 403 (520)
Q Consensus 324 ~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l 403 (520)
|.+|+++|++|+|++|+++++|+||||+||||+++.|+++.++|+|+|+++||||||.++.+. +..+++++|++
T Consensus 315 ~~~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~p~~~~~~l~~~~~ffEFiP~~~~~~------~~~~~~~~v~l 388 (597)
T PLN02249 315 MAQYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCKPSEVSYTIMPNMAYFEFLPHNHDGD------GALDETSLVEL 388 (597)
T ss_pred hHHHHHHHHHHcCCCccccccccccceEEEeecCCCCCCCCcceEecCCcEEEEeeecccCCc------ccCCCCcEecH
Confidence 999999999999999999999999999999999999988888999999999999999875421 01146889999
Q ss_pred CCCCCCCeEEEEEeecccccceecCCeEeee---------------------------------h---------------
Q 010023 404 SQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA---------------------------------V--------------- 435 (520)
Q Consensus 404 ~ele~G~~YelViTt~~GLyRYriGDvVrv~---------------------------------~--------------- 435 (520)
+|||+|++|+|||||++|||||+|||||||| +
T Consensus 389 ~eVe~G~~Y~lVvTT~~GLyRY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~a~~~~~~~~~~v 468 (597)
T PLN02249 389 ADVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVENASRLLAEQGTRV 468 (597)
T ss_pred HHcCCCCeEEEEEEcccceeEeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHHHHHHhhhcCceE
Confidence 9999999999999999999999999999999 1
Q ss_pred ------------------------------------HHHHHhhhhccCCChhhHhhhhcC-CCCCcEEEEeccchHHHHH
Q 010023 436 ------------------------------------LNQCCHEMDVSFVDPGYVVSRRTN-SIGPLELCIVKRGAFRMIL 478 (520)
Q Consensus 436 ------------------------------------l~~~c~~ld~~l~n~~Y~~~R~~g-~l~pl~v~iv~~g~F~~~~ 478 (520)
+++||..++++| |.+|+.+|..+ +|+||+|++|++|+|.+|+
T Consensus 469 ~eft~~~~~~~~p~Hyvl~wei~~~~~~~~~~~~~~~~~~~~~~e~~l-n~~Y~~~R~~~~~L~pl~v~vv~~GtF~~~~ 547 (597)
T PLN02249 469 IEYTSYAETKTIPGHYVIYWELLGRDQSNALPSDEVMAKCCLEMEESL-NSVYRQSRVSDKSIGPLEIRVVQNGTFEELM 547 (597)
T ss_pred EEeEEecCCCCCCCceEEEEEEeccccccCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCccCCeEEEEeCCchHHHHH
Confidence 223444455565 99999999875 9999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCcccCCHHHHHHHhhccccccccccC
Q 010023 479 DYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAY 519 (520)
Q Consensus 479 ~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~~~ 519 (520)
++++++|+++||+|+|||+++++++++|+++|+++|+|+++
T Consensus 548 ~~~~~~G~~~gQ~K~Prl~~~~~~~~~l~~~~~~~~~~~~~ 588 (597)
T PLN02249 548 DYAISRGSSINQYKVPRCVSLTPIMELLDSRVVSAHFSPSL 588 (597)
T ss_pred HHHHhCCCcCCCcCCceEeCCHHHHHHHHhhhheeeccccC
Confidence 99999999999999999999999999999999999999875
No 4
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=100.00 E-value=8.9e-104 Score=860.06 Aligned_cols=441 Identities=32% Similarity=0.597 Sum_probs=345.7
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHhccCChHHHHhhcCccCCCCCCCcChHH--hhhcCCCCCcccchHHHHHHhcCCC
Q 010023 20 IIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETL--YTSLVPLASHADLEPYIQRIADGDT 97 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~~~~~i~s~ed--Fr~~VPl~~Yed~~pyier~~~Ge~ 97 (520)
.+++|++.++||+++|+++|++||+.|++|+|||+| ||++|+|+|| ||++|||++||||+|||+||++||
T Consensus 2 ~l~~f~~~~~~~~~~Q~~~L~~iL~~n~~T~yGr~~-------gf~~i~s~ed~~Fr~~VPi~~Yed~~pyIeR~~~Ge- 73 (528)
T PF03321_consen 2 VLKRFEKATKNPEQVQEEVLREILRRNADTEYGRDH-------GFAGIRSVEDESFRKRVPITDYEDYRPYIERIAEGE- 73 (528)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHCTTSHHHHCT-------T--S----HHHHHHHHS--BEHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHhCHHHHHHHHHHHHHHhhccCHhHHhc-------CCCCCCCcchHHHHHhCCCccHHHHHHHHHHHhcCC-
Confidence 478999999999999999999999999999999999 9999999999 999999999999999999999999
Q ss_pred CCcccccccceeeccccCCCCccceeecChhhHHHHH--HHHHHHHHHHHhcCC-CCCCCcEEEEe--ecCccccccCCc
Q 010023 98 ASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTL--QIFRLAAAYRSRVYP-IREGGRILEFI--YSSKQFKTKGGL 172 (520)
Q Consensus 98 ~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~--~~~~~~~~~~~~~~p-~~~~gk~l~~~--~~~~~~~t~~Gi 172 (520)
.+|||++||.+|++||||||+++|+||+|+++++.+. .++.+|..++++++| ....||.+++. +.+++..|++|+
T Consensus 74 ~~vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~~~~~~~~~~~~~~l~~~~p~~~~~gk~~~l~~~~~~~~~~t~~Gi 153 (528)
T PF03321_consen 74 ENVLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKEFRRLGAIAAWLYYLYRNFPGLLFQGKSLYLSFSFAPPPLRTPGGI 153 (528)
T ss_dssp -CCTSSS--SEEEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHH--HHHHSSS--TTSE--EEEE------EE-TTS-
T ss_pred CCCCCCCCCCeEEeCCCCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcceEEEeecCCCcccCCCCe
Confidence 5799999999999999999555999999999999866 568888888999999 42278854433 346788899999
Q ss_pred eEecCccccccchhHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHHHHHHHHHH
Q 010023 173 TAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQD 252 (520)
Q Consensus 173 p~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~ 252 (520)
|+|++|++++++ .+.++..+|++|.+++.+.|..+++||||+|+|++++||++|+++||++|+.++++|+++|++
T Consensus 154 ~~g~~s~~~~~~-----~~~~~~~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p~~l~~~~~~le~~~~~ 228 (528)
T PF03321_consen 154 PIGSISGIPYRM-----IPPWFRSWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFPSFLLLLFRLLEKHWEE 228 (528)
T ss_dssp EEE-HHHHHHT-------SCCHHG-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEecccccchhh-----ChHHHccCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCHHHHHHHHHHHHHhhhH
Confidence 999999999875 445555689999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHcccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHHHHH
Q 010023 253 ICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLR 332 (520)
Q Consensus 253 l~~dI~~g~~~~~~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~~~~y~~~l~ 332 (520)
+|+||++|+++ .++|||+||++|+++|.+ + .+++++|||||++|+||++|+|.+|+++|+
T Consensus 229 l~~dI~~G~~~---------------~~~p~p~rA~~L~~~~~~----~-~~~~~~lWP~L~~v~~~~~g~~~~y~~~l~ 288 (528)
T PF03321_consen 229 LVEDIRDGTLS---------------LLRPNPERAAELRAEFEK----G-RGIPKRLWPNLKLVSCWGGGSMAPYAPKLR 288 (528)
T ss_dssp HHHHHHHTS-----------------C-S--HHHHHHHHHHHCC----S-TTHHHHHSTT--EEEEE-SGGGGGGHHHHH
T ss_pred hhHHhcCCccc---------------cCCCCHHHHHHHHHhhcc----c-CCCHHHhCCCCcEEEEEcCCChHHHHHHHH
Confidence 99999999998 567999999999999998 6 789999999999999999999999999999
Q ss_pred hHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCCCeE
Q 010023 333 HYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEY 412 (520)
Q Consensus 333 ~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~Y 412 (520)
+|+|++|+++++|+||||+||||+++.. .+|+|+|+++||||||+++.+++ ..+++++++++|||+|++|
T Consensus 289 ~~~g~~~~~~~~y~ASEg~i~i~~~~~~----~~~~l~~~~~ffEFip~~~~~~~------~~~~~~~l~~~ele~G~~Y 358 (528)
T PF03321_consen 289 EYFGGVPIQSKGYGASEGFIGIPLDPED----PGYVLAPDSGFFEFIPVDEDEQN------PSEQPKTLLLHELEVGEEY 358 (528)
T ss_dssp HHHTTS-EEE-EEEETTEEEEEES-CCC------EEE-TTSSEEEEEE-STT-------------SSSEEGGG--TT-EE
T ss_pred HHcCCCceeeccccccceEEEEecCCCC----CceEeecCCeEEEEEeccCCccc------ccCCCceecHHHhcCCCeE
Confidence 9999999999999999999999999655 37999999999999999876520 1157999999999999999
Q ss_pred EEEEeecccccceecCCeEeee----------------------------------------------------------
Q 010023 413 EIVLTSFTGLYRYRLGDVVEVA---------------------------------------------------------- 434 (520)
Q Consensus 413 elViTt~~GLyRYriGDvVrv~---------------------------------------------------------- 434 (520)
||||||.+|||||||||||||+
T Consensus 359 elviTt~~GLyRY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~ 438 (528)
T PF03321_consen 359 ELVITTNSGLYRYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSG 438 (528)
T ss_dssp EEEEESTTS-SSEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SS
T ss_pred EEEEecccceeeeecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccC
Confidence 9999999999999999999999
Q ss_pred ----------------hHHHHHhhhhccC--CChhhHhhhhc-CCCCCcEEEEeccchHHHHHHHHHhC-CCCCCCCCCC
Q 010023 435 ----------------VLNQCCHEMDVSF--VDPGYVVSRRT-NSIGPLELCIVKRGAFRMILDYFVGN-GAALSQFKTP 494 (520)
Q Consensus 435 ----------------~l~~~c~~ld~~l--~n~~Y~~~R~~-g~l~pl~v~iv~~g~F~~~~~~~~~~-G~~~~Q~K~P 494 (520)
.++.+|..+|++| .|++|+.+|.. |+|+||+|++|++|+|.+|+++++++ |++.+|||+|
T Consensus 439 ~~~~Y~~~~e~~~~~~~~~~~~~~lD~~L~~~n~~Y~~~R~~~g~L~p~~v~~v~~g~f~~~~~~~~~~~G~~~~Q~K~p 518 (528)
T PF03321_consen 439 NPPHYVLFWELEGEPDDLEELAKALDESLQELNPHYRRARESDGQLGPPRVHIVRPGTFDALMERAVARLGGSAGQYKVP 518 (528)
T ss_dssp SSBEEEEEEEECS-HHHHHHHHHHHHHCS----HHHHHHHHTSTSC---EEEEE-TTHHHHHHHHHHCT-T--SSS----
T ss_pred CCCceEEEEEeCCCchHHHHHHHHHHHHhhhCCchHHHHHhhcCCcCCcEEEEeCcchHHHHHHHHhhcCCCCccceeCc
Confidence 3455677788877 59999999999 99999999999999999999999999 9999999999
Q ss_pred cccCCHHHH
Q 010023 495 RCTSNQVLV 503 (520)
Q Consensus 495 r~~~~~~~~ 503 (520)
||++++++.
T Consensus 519 r~~~~~~~~ 527 (528)
T PF03321_consen 519 RLIRDREFV 527 (528)
T ss_dssp SS--TCHHH
T ss_pred cccCccccC
Confidence 999999884
No 5
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.78 E-value=2.6e-18 Score=180.81 Aligned_cols=319 Identities=19% Similarity=0.240 Sum_probs=197.6
Q ss_pred HhcHHHHHHHHHHHHHHh-ccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHH-HHhcCCCCCcccccc
Q 010023 28 SENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQ-RIADGDTASLLTQEP 105 (520)
Q Consensus 28 ~~~~~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyie-r~~~Ge~~~ll~~~p 105 (520)
.+..++.|++.|+.+++. .+|++|+|++| .++++....|++.+|+. ++|+++.++++.... ++.+.. .+.
T Consensus 20 r~eL~~lq~~rl~~~~k~~yeNsPfYr~~f-~~~~v~p~~i~~l~Dl~-klP~t~K~~lre~ypf~~~~~~------~~~ 91 (438)
T COG1541 20 RKELEKLQEKRLKSTVKYVYENSPFYRKKF-KEAGVDPDDIKTLEDLA-KLPFTTKDDLRENYPFGDFAVP------KEE 91 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHcCCChHHhhCHHHHH-hCCCCcHHHHHHhCCccccccc------ccc
Confidence 356778999999999987 99999999997 55788888999999999 599999999988766 555543 234
Q ss_pred cceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeecCccccccCCceEecCccccccch
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASE 185 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~~~ 185 (520)
+..+..||||| |+|+.+|||..-+......++ . .........+.|..+.++ -+...+|+ +..+.
T Consensus 92 i~~ihaSSGTT-GkPt~~~~t~~D~~~wa~~~a---R-~~~~~g~~~gd~v~~~~~---yGl~tgg~------~~~~g-- 155 (438)
T COG1541 92 IVRIHASSGTT-GKPTVFGYTAKDIERWAELLA---R-SLYSAGVRKGDKVQNAYG---YGLFTGGL------GLHYG-- 155 (438)
T ss_pred eEEEEccCCCC-CCceeeecCHHHHHHHHHHHH---H-HHHHccCCCCCEEEEEee---eccccCCc------hhHHH--
Confidence 55689999999 999999999986644222111 1 111222231455544332 11111220 00000
Q ss_pred hHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccE-EEecchHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 010023 186 EFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEF-ITSTFAYSIVQAFTAFEECWQDICIDVREGSLSS 264 (520)
Q Consensus 186 ~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~-i~~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~ 264 (520)
.- .++. +.+.++.. -+.-++-|.+-.+.
T Consensus 156 -------------------------------a~--------rig~~vip~~~g~-----------~~~~~~l~~df~~t- 184 (438)
T COG1541 156 -------------------------------AE--------RIGATVIPISGGN-----------TERQLELMKDFKPT- 184 (438)
T ss_pred -------------------------------HH--------hhCEEEEccCCcc-----------HHHHHHHHHhcCCc-
Confidence 00 0111 11111101 11111222222222
Q ss_pred CCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcc
Q 010023 265 SRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLV 341 (520)
Q Consensus 265 ~~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~ 341 (520)
.+.+.|+....+|+++++. |+.++-- +++ ..+.|+ .+.-++.+++.| +++.+
T Consensus 185 ----------vI~~tps~~l~lae~~~~~----------G~~~~~~-~lk---~~i~gaE~~see~R~~ie~~~-g~~~~ 239 (438)
T COG1541 185 ----------VIAATPSYLLYLAEEAEEE----------GIDPDKL-SLK---KGIFGAEPWSEEMRKVIENRF-GCKAF 239 (438)
T ss_pred ----------EEEEChHHHHHHHHHHHHc----------CCChhhc-cee---EEEEecccCCHHHHHHHHHHh-CCcee
Confidence 1333444444455555443 3223211 345 556665 788888889889 55776
Q ss_pred cCccccCcce-eeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc
Q 010023 342 SADYGSTESW-IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT 420 (520)
Q Consensus 342 ~~~Y~aSEg~-igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~ 420 (520)
..||+||++ .| -.+|+... ++++.-++.++|-+..+. ++ .|..|+.+|||+||..
T Consensus 240 -diYGltE~~g~g---~~eC~~~~-glhi~eD~~~~Ei~dP~t--------------~e-----~l~dge~GelV~T~L~ 295 (438)
T COG1541 240 -DIYGLTEGFGPG---AGECTERN-GLHIWEDHFIFEIVDPET--------------GE-----QLPDGERGELVITTLT 295 (438)
T ss_pred -eccccccccCCc---cccccccc-CCCcchhhceeeeecCCc--------------Cc-----cCCCCCeeEEEEEecc
Confidence 999999995 44 34665544 788888888999987542 23 7889999999999976
Q ss_pred c----ccceecCCeEeeehHHHHHhh------h-------h----------------ccC-----CChhhHhhh-hcCCC
Q 010023 421 G----LYRYRLGDVVEVAVLNQCCHE------M-------D----------------VSF-----VDPGYVVSR-RTNSI 461 (520)
Q Consensus 421 G----LyRYriGDvVrv~~l~~~c~~------l-------d----------------~~l-----~n~~Y~~~R-~~g~l 461 (520)
- |.|||+||++.+. ..-|.| + | ..+ ..++|...- ..+.+
T Consensus 296 ~~~~PlIRYrtgDit~i~--~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~ 373 (438)
T COG1541 296 KEGMPLIRYRTGDITVIL--SDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGL 373 (438)
T ss_pred ccCcceEEEEcCCeeEec--ccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCC
Confidence 5 9999999999999 444554 1 1 011 134676442 25679
Q ss_pred CCcEEEEeccc
Q 010023 462 GPLELCIVKRG 472 (520)
Q Consensus 462 ~pl~v~iv~~g 472 (520)
+.++|.+.-..
T Consensus 374 d~L~V~vE~~~ 384 (438)
T COG1541 374 DELTVRVELEN 384 (438)
T ss_pred ceEEEEEEecC
Confidence 99999998764
No 6
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.73 E-value=2.2e-17 Score=177.85 Aligned_cols=284 Identities=15% Similarity=0.129 Sum_probs=161.2
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHHHhcCCCCCcc--cccc
Q 010023 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLL--TQEP 105 (520)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier~~~Ge~~~ll--~~~p 105 (520)
++.++.|.+.|+++|+. .++++|+|++| ++++++.++|++.+|+++ +|+++.+|++..-... ++.=..+ +.+.
T Consensus 12 ~~l~~~q~~rl~~~l~~a~~~spfYr~~~-~~~g~~p~~i~sl~dl~~-lP~~~k~~lr~~~p~~--~~~~~~~~~~~~~ 87 (445)
T TIGR03335 12 GELDALVEERIRYTVHYAAEHSPFYKKWF-QENNISPSDIKSHEDLLE-LPVISGEVIRKNQPPV--TDDFMFKSADWKD 87 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHH-HHcCCChhhCCCHHHHHH-CCCCCHHHHHhcCCcc--ccccccccCCHHH
Confidence 45678999999999997 67999999996 456666778999999995 9999999997652100 0000111 2333
Q ss_pred cceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeecCccccccCCceEecCccccccch
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASE 185 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~~~ 185 (520)
+..+..||||| |+||.+++|.+.+........ ....+.++..+++.+. .+ + .|.-.|. ..+
T Consensus 88 i~~i~~TSGTT-G~Pk~v~~T~~dl~~~~~~~~----r~~~~~G~~~gD~vl~-~~-~------~~~~~g~---~~~--- 148 (445)
T TIGR03335 88 IYTIHETSGTS-GTPKSFFLTWDDWKRYAEKYA----RSFVSQGFTAGDRMVI-CA-S------YGMNVGA---NTM--- 148 (445)
T ss_pred eEEEEeCCCCC-CCcceeeecHHHHHHHHHHHH----HHHHHcCCCCCCeEEE-Ee-c------CCcchhH---HHH---
Confidence 55677799999 899999999886654322211 1111233331334433 21 1 0100000 000
Q ss_pred hHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 010023 186 EFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSS 265 (520)
Q Consensus 186 ~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~ 265 (520)
.+..+.++ ...+.... . +..++.|++..+.
T Consensus 149 ----------------------------~~~~~~~G------a~vi~~~~---~-----------~~~~~~i~~~~~t-- 178 (445)
T TIGR03335 149 ----------------------------TLAAREVG------MSIIPEGK---C-----------TFPIRIIESYRPT-- 178 (445)
T ss_pred ----------------------------HHHHHHcC------CEEEcCCc---h-----------hHHHHHHHHhCCC--
Confidence 00000011 01111000 0 0112233333322
Q ss_pred CCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCccc
Q 010023 266 RITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVS 342 (520)
Q Consensus 266 ~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~ 342 (520)
.+.+.++....+|+.+++. |+-+. .++++ .++.|+ ....+..+++.+ +++++
T Consensus 179 ---------~l~~~ps~ll~La~~~~~~----------g~~~~-~~~lr---~ii~gGE~l~~~~r~~ie~~~-g~~v~- 233 (445)
T TIGR03335 179 ---------GIVASVFKLLRLARRMKAE----------GIDPA-ESSIR---RLVVGGESFADESRNYVEELW-GCEVY- 233 (445)
T ss_pred ---------EEEECHHHHHHHHHHHHHc----------CCCcc-cCcce---EEEEcCCCCCHHHHHHHHHHh-CCcEE-
Confidence 1222222222334333221 22222 24677 445444 445567788888 57888
Q ss_pred CccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc--
Q 010023 343 ADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT-- 420 (520)
Q Consensus 343 ~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~-- 420 (520)
..||+||+.++ ..|+. ..++++..+..++|.++.+. .+ .|..|+..|||||+..
T Consensus 234 ~~YG~TE~~~~----~~c~~-~~g~h~~~d~~~vEIvDp~~--------------~~-----~vp~Ge~GELvvT~L~~~ 289 (445)
T TIGR03335 234 NTYGSTEGTMC----GECQA-VAGLHVPEDLVHLDVYDPRH--------------QR-----FLPDGECGRIVLTTLLKP 289 (445)
T ss_pred ecCChhhhhhe----EEecC-CCCccccCCceEEEEEcCCC--------------CC-----CCcCCCceEEEEEecCCC
Confidence 89999998544 23422 13688888888999986431 22 4678999999999984
Q ss_pred ------cccceecCCeEeee
Q 010023 421 ------GLYRYRLGDVVEVA 434 (520)
Q Consensus 421 ------GLyRYriGDvVrv~ 434 (520)
=|.|||+||++++.
T Consensus 290 ~~r~~~PliRYrtgD~~~~~ 309 (445)
T TIGR03335 290 GERCGSLLINYDTEDTTVVI 309 (445)
T ss_pred CccCCceEEEeecCceEEEe
Confidence 28999999999974
No 7
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=99.67 E-value=7.2e-16 Score=164.77 Aligned_cols=266 Identities=17% Similarity=0.228 Sum_probs=168.1
Q ss_pred HhcHHHHHHHHHHHHHHh-ccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHHHhcCC--CCC-----
Q 010023 28 SENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGD--TAS----- 99 (520)
Q Consensus 28 ~~~~~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier~~~Ge--~~~----- 99 (520)
.+..++.|++.|+++|+. ..+++|+|++ . ++ +++ .+|+++.+++....+++.... .+.
T Consensus 21 ~~~l~~~Q~~rL~~ll~~a~~~sPfYr~~-------~--~~----~l~-~lPvl~K~~~~~~fd~~~t~~l~~~~~~~~a 86 (430)
T TIGR02304 21 REALENWQAKQLEKFLQFVLSHSPWFQRY-------H--TI----PFN-QWPMMDKALMMEHFDELNTAGLKKDEALDCA 86 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhc-------c--CC----CHH-HCCCcCHHHHHHHHHHhhccCCChhhhhHHh
Confidence 346788999999999997 6999999998 3 23 466 599999999999999987421 010
Q ss_pred -------cccc--cccceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCC--CCCCCcEEEEeecCccccc
Q 010023 100 -------LLTQ--EPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP--IREGGRILEFIYSSKQFKT 168 (520)
Q Consensus 100 -------ll~~--~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p--~~~~gk~l~~~~~~~~~~t 168 (520)
.+.+ +.+ ....||||| |+|-.|.++++..... .+ ..+.++.| +..++|...|..+..
T Consensus 87 ~~~e~~r~f~~~~~~~-~v~~TSGSS-G~p~~f~~~~~~~~~~-~a-----~~~~~~~~~g~~~g~r~a~~~~~~~---- 154 (430)
T TIGR02304 87 MRSEKTRDFKPCVGNI-SVGLSSGTS-GRRGLFVVSPEEQQMW-AG-----GILAKVLPDGLFAKHRIAFFLRADN---- 154 (430)
T ss_pred hhhhhhcccccccCcE-EEEECCCCC-CCceEEEECHHHHHHH-HH-----HHHhhhCccccccCCcEEEEEccCh----
Confidence 1111 233 556799999 8999999999865321 11 11223333 332456655421111
Q ss_pred cCCceEecCccccccchhHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHHHHHH
Q 010023 169 KGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEE 248 (520)
Q Consensus 169 ~~Gip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~~l~~ 248 (520)
..+. .... .+ +. +..+++. +
T Consensus 155 -----------~ly~--~~~~---------------------------~~------------~~-------~~~~~l~-~ 174 (430)
T TIGR02304 155 -----------NLYQ--SVNN---------------------------RW------------IS-------LDFFDLL-A 174 (430)
T ss_pred -----------hHHH--HHHh---------------------------cc------------ce-------eeecCCC-c
Confidence 0000 0000 00 00 1112223 5
Q ss_pred HHHHHHHHHHcccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hH
Q 010023 249 CWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQ 325 (520)
Q Consensus 249 ~w~~l~~dI~~g~~~~~~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~---~~ 325 (520)
.+++.++.|.+-.+. .|.++++....+|+++++. |+ ++ +++ .+.+++ ..
T Consensus 175 ~~~~~l~~L~~~~P~-----------~L~g~pS~l~~LA~~~~~~----------~l--~~--~~k---~ii~~~E~l~~ 226 (430)
T TIGR02304 175 PFQAHIKRLNQRKPS-----------IIVAPPSVLRALALEVMEG----------EL--TI--KPK---KVISVAEVLEP 226 (430)
T ss_pred CHHHHHHHHHHhCCC-----------EEEEcHHHHHHHHHHHHhc----------CC--CC--Cce---EEEEccCCCCH
Confidence 677888888877776 4566666666666655431 23 22 455 333333 66
Q ss_pred HHHHHHHhHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCC
Q 010023 326 HYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQ 405 (520)
Q Consensus 326 ~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~e 405 (520)
..++.|++.|| ++++ ..||||||++| .+|+. .+|++..+..|+|+..+++ +.
T Consensus 227 ~~r~~Ie~~fg-~~V~-~~YG~tEg~la----~eC~~--g~lHl~ed~~~vE~~ivD~-------------~~------- 278 (430)
T TIGR02304 227 QDRELIRNVFK-NTVH-QIYQATEGFLA----STCRC--GTLHLNEDLVHIEKQYLDE-------------HK------- 278 (430)
T ss_pred HHHHHHHHHhC-CCee-EccCCchhheE----EecCC--CCEEEccccEEEEeeEECC-------------CC-------
Confidence 67788999995 7988 79999999887 66654 3699999999999633331 11
Q ss_pred CCCCCeEEEEEeeccc----ccceecCCeEeeehHHHHHhh
Q 010023 406 VKLGQEYEIVLTSFTG----LYRYRLGDVVEVAVLNQCCHE 442 (520)
Q Consensus 406 le~G~~YelViTt~~G----LyRYriGDvVrv~~l~~~c~~ 442 (520)
...+|||+... |.||++||++++. .+.|.|
T Consensus 279 -----~~~~ViT~L~n~~~PlIRYrtGD~~~~~--~~~C~C 312 (430)
T TIGR02304 279 -----RFVPIITDFTRTTQPIVRYRLNDILVES--EQPCSC 312 (430)
T ss_pred -----ceEEEEecCCCccceEEeeeCCCEEEeC--CCCCCC
Confidence 13359999886 9999999998886 555654
No 8
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.66 E-value=2.1e-15 Score=160.85 Aligned_cols=94 Identities=21% Similarity=0.315 Sum_probs=73.0
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHHHhcCCCCCcc--cccc
Q 010023 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLL--TQEP 105 (520)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier~~~Ge~~~ll--~~~p 105 (520)
++.++.|.+.|+++|+. .++++|+|++| ..+++..+.|.+.+||++ +|+++.++++.... ..++ ..+.
T Consensus 6 ~~l~~~q~~~l~~~~~~a~~~~pfYr~~~-~~~~i~~~~i~~~~dl~~-lP~~~K~~l~~~~~-------~~~~~~~~~~ 76 (422)
T TIGR02155 6 DELRALQTQRLKWTVKHAYENVPHYRKAF-DAAGVHPDDLQSLSDLAK-FPFTQKHDLRDNYP-------FGLFAVPREQ 76 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHH-HHcCCChhhCCCHHHHHH-CCCCcHHHHhhcCC-------CcccCCChHH
Confidence 45788999999999998 57899999985 445566678999999984 99999999976432 1122 2333
Q ss_pred cceeeccccCCCCccceeecChhhHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.++..||||| |+||.+++|+..+..
T Consensus 77 ~~~~~~TSGTT-G~Pk~v~~t~~~~~~ 102 (422)
T TIGR02155 77 VVRIHASSGTT-GKPTVVGYTQNDIDT 102 (422)
T ss_pred cEEEEECCCCC-CCCeEeccCHHHHHH
Confidence 54666899999 899999999986643
No 9
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=97.89 E-value=0.00055 Score=75.50 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=57.4
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce--eeecCCCC-CCCCCceeeeeCCceEEEEeeCCc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW--IGVNVDPS-LPPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~--igi~~~~~-~p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
.++|+ .+.+|+ ....++++++.++++++. .+||+||+. ++.+.... ...+..+. ..|+..+ ..+..
T Consensus 298 ~~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~-p~~g~~v-~i~d~-- 369 (539)
T PRK06334 298 LPSLR---FVVIGGDAFKDSLYQEALKTFPHIQLR-QGYGTTECSPVITINTVNSPKHESCVGM-PIRGMDV-LIVSE-- 369 (539)
T ss_pred ccccc---EEEECCccCCHHHHHHHHHHCCCCeEE-ecccccccCceEEeccCCCCCCCCcCce-ecCCCEE-EEEcC--
Confidence 35677 555555 445667778888888888 899999984 33322111 00111222 2233221 11211
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc---ccc---------------ceecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT---GLY---------------RYRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~---GLy---------------RYriGDvVrv~ 434 (520)
++.. +|..|+..||+|...+ |.| -|++||++++.
T Consensus 370 ------------~~~~-----~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d 421 (539)
T PRK06334 370 ------------ETKV-----PVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVD 421 (539)
T ss_pred ------------CCCc-----cCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEEC
Confidence 1122 5678899999996532 222 39999999987
No 10
>PRK09274 peptide synthase; Provisional
Probab=97.82 E-value=0.00076 Score=74.19 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=28.1
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhC-CCCcccCccccCcce
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAG-DLPLVSADYGSTESW 351 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g-~~pi~~~~Y~aSEg~ 351 (520)
.|+++ .+.+|+ ....++++++.++ +++++ ..||+||+.
T Consensus 287 ~~~lr---~~~~gG~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~ 328 (552)
T PRK09274 287 LPSLR---RVISAGAPVPIAVIERFRAMLPPDAEIL-TPYGATEAL 328 (552)
T ss_pred Cchhh---EEEecCCcCCHHHHHHHHHHcCCCceEE-ccccccccc
Confidence 35777 555555 5566778888887 48888 999999984
No 11
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=97.75 E-value=0.0005 Score=72.42 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=64.1
Q ss_pred CCCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcc-eeeecC--CCC-CCCCCceeeeeCCceEEEEeeCC
Q 010023 309 LWPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTES-WIGVNV--DPS-LPPEDVTFAVIPTFSYFEFIPIH 382 (520)
Q Consensus 309 lWP~L~~i~~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg-~igi~~--~~~-~p~~~~~~~l~p~~~ffEFip~~ 382 (520)
-+++++.|.+ +|+ ...-.+++++.++.++++ ..||+||+ .++... ... ...+..+ ...| ..-++.+..+
T Consensus 275 ~l~~lr~v~~--~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G-~~~~-~~~~~ivd~~ 349 (417)
T PF00501_consen 275 DLSSLRTVIS--GGEPLPPDLLRRLRKAFGNAPII-NLYGSTETGSIATIRPPEDDIEKPGSVG-KPLP-GVEVKIVDPN 349 (417)
T ss_dssp TGTT-SEEEE--ESST-CHHHHHHHHHHHTTSEEE-EEEEEGGGSSEEEEEETTTHHSSTTSEB-EEST-TEEEEEECTT
T ss_pred cccccccccc--ccccCChhhccccccccccccce-ecccccccceeeeccccccccccccccc-cccc-cccccccccc
Confidence 3556885544 333 667778888999777787 99999999 455422 111 1122222 2344 4555666432
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---ccccc--------------eecCCeEeee
Q 010023 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLYR--------------YRLGDVVEVA 434 (520)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLyR--------------YriGDvVrv~ 434 (520)
..+ .++.|+..||+|+.. .|.|+ |++||++++.
T Consensus 350 --------------~~~-----~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d 399 (417)
T PF00501_consen 350 --------------TGE-----PLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLD 399 (417)
T ss_dssp --------------TSS-----BESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEE
T ss_pred --------------ccc-----cccccccccccccCCccceeeeccccccccccccccceecceEEEEC
Confidence 133 567999999999953 35443 9999999987
No 12
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=97.74 E-value=0.00042 Score=74.79 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 310 WPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 310 WP~L~~i~~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
.|+++.| +.+|. ...-.+.+++.+++++++ ..||+||..
T Consensus 259 ~~~l~~i--~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~ 299 (503)
T PRK04813 259 LPNLTHF--LFCGEELPHKTAKKLLERFPSATIY-NTYGPTEAT 299 (503)
T ss_pred CCCceEE--EEecCcCCHHHHHHHHHHCCCceEE-eCcccchhe
Confidence 4677743 22333 556677788888888887 999999973
No 13
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=97.68 E-value=0.00052 Score=75.58 Aligned_cols=98 Identities=11% Similarity=0.184 Sum_probs=56.0
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce-eeecCCCC--CC-CCCceeeeeCCceEEEEeeCC
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNVDPS--LP-PEDVTFAVIPTFSYFEFIPIH 382 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~-igi~~~~~--~p-~~~~~~~l~p~~~ffEFip~~ 382 (520)
.|+++ ++++|+ ....++.+++.+ +++++ ..||+||+. ++...... .. ....+. ..|+. -++.+..
T Consensus 311 ~~~l~---~~~~~G~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~i~d~- 382 (547)
T PRK13295 311 VSSLR---TFLCAGAPIPGALVERARAAL-GAKIV-SAWGMTENGAVTLTKLDDPDERASTTDGC-PLPGV-EVRVVDA- 382 (547)
T ss_pred cccce---EEEEecCCCCHHHHHHHHHHh-CCCeE-EeccCCCCCCeeeccCCCcchhccCcccc-ccCCc-EEEEECC-
Confidence 46777 555444 556667777777 67988 899999983 33221110 00 000111 22222 2233321
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---cccc------------ceecCCeEeee
Q 010023 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY------------RYRLGDVVEVA 434 (520)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy------------RYriGDvVrv~ 434 (520)
+.. ++..|+..||+|+.. .|.| .|++||++++.
T Consensus 383 --------------~~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~ 430 (547)
T PRK13295 383 --------------DGA-----PLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARID 430 (547)
T ss_pred --------------CCC-----CCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEc
Confidence 122 567788899999764 3333 29999999986
No 14
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.63 E-value=0.0012 Score=71.28 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=23.4
Q ss_pred ccccceeeccccCCCCccceeecChhhHHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
.+-+.+...||||| |.||.|++|...+..
T Consensus 166 ~~~~~~i~~TSGtT-G~PK~v~~t~~~l~~ 194 (521)
T PRK06187 166 ENDAAAMLYTSGTT-GHPKGVVLSHRNLFL 194 (521)
T ss_pred ccceEEEEECCCCC-CCCceEEeehHHHHH
Confidence 33455778899999 899999999987654
No 15
>PRK07529 AMP-binding domain protein; Validated
Probab=97.63 E-value=0.0017 Score=73.22 Aligned_cols=103 Identities=14% Similarity=0.210 Sum_probs=58.3
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCC---CCCCceeeeeCCceEEEEeeCCc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSL---PPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~---p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
++.++ .+.+|+ ....++++++.+ ++++. .+||+||+.......+.. ..+..+. .+|+. -+.++..++
T Consensus 332 ~~slr---~v~~gg~~l~~~l~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~svG~-~~p~~-~v~i~~~d~ 404 (632)
T PRK07529 332 ISSLR---YALCGAAPLPVEVFRRFEAAT-GVRIV-EGYGLTEATCVSSVNPPDGERRIGSVGL-RLPYQ-RVRVVILDD 404 (632)
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHh-CCcEe-eeecccccCcccccCCccccccCCCccc-ccCCc-eEEEEEcCC
Confidence 35677 555555 445556677767 67888 999999985333222211 1111222 22332 234444332
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---cccc-------------ceecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY-------------RYRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy-------------RYriGDvVrv~ 434 (520)
. +. ...++..|+..||+|+.. .|.+ -|++||+.++.
T Consensus 405 ~-------------g~--~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d 456 (632)
T PRK07529 405 A-------------GR--YLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRID 456 (632)
T ss_pred C-------------Cc--ccccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEc
Confidence 1 21 113678899999999763 2211 38999999987
No 16
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=97.60 E-value=0.0019 Score=67.59 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=27.7
Q ss_pred CCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 310 WPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 310 WP~L~~i~~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
.++++.| +.+|+ ....++.+++.++++++. ..||+||+.
T Consensus 233 ~~~l~~v--~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~g 273 (408)
T TIGR01733 233 LASLRLV--ILGGEALTPALVDRWRARGPGARLI-NLYGPTETT 273 (408)
T ss_pred ccCceEE--EEeCccCCHHHHHHHHHhCCCcEEE-ecccCCceE
Confidence 4567733 22333 666677888888878888 899999984
No 17
>PRK07788 acyl-CoA synthetase; Validated
Probab=97.60 E-value=0.0015 Score=71.92 Aligned_cols=98 Identities=18% Similarity=0.081 Sum_probs=55.4
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce-eeecC--CCCCCCCCceeeeeCCceEEEEeeCCc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNV--DPSLPPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~-igi~~--~~~~p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
.++|+ .++.|+ ...-++++++.++ .++. ..||+||+. +++.. +....++..+. ..|+. -++.+..
T Consensus 322 ~~~lr---~i~~gG~~l~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~-~~~~~-~~~i~d~-- 392 (549)
T PRK07788 322 TSSLK---IIFVSGSALSPELATRALEAFG-PVLY-NLYGSTEVAFATIATPEDLAEAPGTVGR-PPKGV-TVKILDE-- 392 (549)
T ss_pred CCcee---EEEEeCCCCCHHHHHHHHHHhC-ccce-eccCcchhchhhccChhhhhhcCCCccc-CCCCc-EEEEECC--
Confidence 35677 555554 4555666777774 4776 899999974 22211 00001111121 22332 2344432
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecccccc-------------eecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYR-------------YRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~GLyR-------------YriGDvVrv~ 434 (520)
+.+ ++..|+..||+|++..-+-+ |++||+++..
T Consensus 393 -------------~~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~ 438 (549)
T PRK07788 393 -------------NGN-----EVPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFD 438 (549)
T ss_pred -------------CcC-----CCCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEc
Confidence 123 56779999999987543333 5899999886
No 18
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=97.59 E-value=0.0021 Score=70.58 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.2
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+.+...||||| |+||-+..|++.+.
T Consensus 192 ~~~~~i~~TSGTT-G~PK~v~~s~~~l~ 218 (541)
T TIGR03205 192 DDVALLQYTGGTT-GLPKGAMLTHGNLT 218 (541)
T ss_pred cCeEEEEECCCCC-CCCcEEEEeHHHHH
Confidence 3455778899999 99999999998764
No 19
>PRK06060 acyl-CoA synthetase; Validated
Probab=97.59 E-value=0.00096 Score=76.08 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=57.4
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCccee-eecCC-CCCCCCCceeeeeCCceEEEEeeCCcc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GVNVD-PSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~i-gi~~~-~~~p~~~~~~~l~p~~~ffEFip~~~~ 384 (520)
+++++ ++++|+ ....++++.+.+++++++ ..||.||+.. .+... .....+..+. ..|+. -++.+..
T Consensus 259 ~~slr---~i~~gGe~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~iG~-p~~~~-~v~i~d~--- 329 (705)
T PRK06060 259 FRSLR---CVVSAGEALELGLAERLMEFFGGIPIL-DGIGSTEVGQTFVSNRVDEWRLGTLGR-VLPPY-EIRVVAP--- 329 (705)
T ss_pred cccee---EEEEecCcCCHHHHHHHHHHcCCCceE-eeeeccccCceEEeccCCCCCcCcccc-cCCCc-EEEEECC---
Confidence 35677 556555 445567778888888988 9999999842 22111 1111111122 23333 2233322
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---cccc-----------ceecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY-----------RYRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy-----------RYriGDvVrv~ 434 (520)
+++ .+..|+..||+|+.. .|.| -|++||+++..
T Consensus 330 ------------~g~-----~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~ 376 (705)
T PRK06060 330 ------------DGT-----TAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCID 376 (705)
T ss_pred ------------CCC-----CCCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEEC
Confidence 122 466788999999752 2333 29999999986
No 20
>PRK07638 acyl-CoA synthetase; Validated
Probab=97.55 E-value=0.0017 Score=70.17 Aligned_cols=94 Identities=17% Similarity=0.105 Sum_probs=55.9
Q ss_pred EEEcCC--hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCC---CCCCceeeeeCCceEEEEeeCCccccCCCCCC
Q 010023 318 SIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSL---PPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAI 392 (520)
Q Consensus 318 ~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~---p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~ 392 (520)
.+.+|+ ...-..++++.+|+++++ ..||+||+.......+.. .++..+. .+|+ .-++.+..
T Consensus 258 ~~~~G~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~----------- 323 (487)
T PRK07638 258 IISSGAKWEAEAKEKIKNIFPYAKLY-EFYGASELSFVTALVDEESERRPNSVGR-PFHN-VQVRICNE----------- 323 (487)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCeEE-EEecCCccCceEEecccccCCCCCCCCc-ccCC-cEEEEECC-----------
Confidence 556665 455567788888888888 899999994322222111 1111222 2233 34444432
Q ss_pred CCCCCCCccccCCCCCCCeEEEEEeecc---ccc-------------ceecCCeEeee
Q 010023 393 DDFIEDEPVPLSQVKLGQEYEIVLTSFT---GLY-------------RYRLGDVVEVA 434 (520)
Q Consensus 393 ~~~~~~~~l~l~ele~G~~YelViTt~~---GLy-------------RYriGDvVrv~ 434 (520)
++. +++.|+..||+|++.. |.| .|++||++++.
T Consensus 324 ----~g~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d 372 (487)
T PRK07638 324 ----AGE-----EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYED 372 (487)
T ss_pred ----CCC-----CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEc
Confidence 123 5678999999998632 222 47899998875
No 21
>PLN02574 4-coumarate--CoA ligase-like
Probab=97.54 E-value=0.0014 Score=72.53 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=56.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce-eee-cCCCCC--CCCCceeeeeCCceEEEEeeCC
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGV-NVDPSL--PPEDVTFAVIPTFSYFEFIPIH 382 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~-igi-~~~~~~--p~~~~~~~l~p~~~ffEFip~~ 382 (520)
++.++ ++..|+ ...-++++.+.++++++. .+||+||+. +.. ...... ..+..+ ...|+ .-.+-+..+
T Consensus 318 ~~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~vG-~~~~~-~~v~i~d~~ 391 (560)
T PLN02574 318 LKSLK---QVSCGAAPLSGKFIQDFVQTLPHVDFI-QGYGMTESTAVGTRGFNTEKLSKYSSVG-LLAPN-MQAKVVDWS 391 (560)
T ss_pred cccce---EEEEecccCCHHHHHHHHHHCCCCcEE-ecccccccCceeecCCCccccCCCCcee-eeCCC-cEEEEEeCC
Confidence 45666 444444 445566777778888888 899999984 222 111111 111122 12233 333334322
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc---ccc--------------ceecCCeEeee
Q 010023 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT---GLY--------------RYRLGDVVEVA 434 (520)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~---GLy--------------RYriGDvVrv~ 434 (520)
++. ++..|+..||+|+... |.| -|++||+.++.
T Consensus 392 --------------~g~-----~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~ 441 (560)
T PLN02574 392 --------------TGC-----LLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFD 441 (560)
T ss_pred --------------CCc-----CCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEE
Confidence 123 5678999999998632 222 28999999986
No 22
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.53 E-value=0.0026 Score=70.35 Aligned_cols=98 Identities=18% Similarity=0.349 Sum_probs=55.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCC--CCCCCceeeeeCCceEEEEeeCCcc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS--LPPEDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~--~p~~~~~~~l~p~~~ffEFip~~~~ 384 (520)
.+.++ ++..|+ ...-++.+++.+ +++++ ..||+||+...+...+. ..++..+. ..|+ ...+.++.+
T Consensus 325 ~~~lr---~v~~gG~~~~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~vG~-~~~~-~~v~i~d~~-- 395 (562)
T PRK05677 325 FSALK---LTLSGGMALQLATAERWKEVT-GCAIC-EGYGMTETSPVVSVNPSQAIQVGTIGI-PVPS-TLCKVIDDD-- 395 (562)
T ss_pred hhhce---EEEEcCccCCHHHHHHHHHHc-CCCee-ccCCccccCcceeecCccCCCCCccCc-cCCC-CEEEEECCC--
Confidence 35677 555555 444455666666 57888 99999998422222111 11122232 2233 334444321
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---cccc--------------ceecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY--------------RYRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy--------------RYriGDvVrv~ 434 (520)
.. +|..|+..||+|+.. .|.| -|++||+.++.
T Consensus 396 -------------~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~ 444 (562)
T PRK05677 396 -------------GN-----ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQ 444 (562)
T ss_pred -------------CC-----CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEEC
Confidence 22 567888999999753 1222 28999999887
No 23
>PRK06145 acyl-CoA synthetase; Validated
Probab=97.52 E-value=0.0012 Score=71.37 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=57.5
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCC---CC-CCCCceeeeeCCceEEEEeeCCc
Q 010023 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDP---SL-PPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 311 P~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~---~~-p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
++++ ++.+|+ ....++.+++.+++++++ .+||+||+........ .. ..+..+. ..|+. -.+.++.
T Consensus 264 ~~l~---~~~~gG~~~~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~~~-- 335 (497)
T PRK06145 264 DSLA---WCIGGGEKTPESRIRDFTRVFTRARYI-DAYGLTETCSGDTLMEAGREIEKIGSTGR-ALAHV-EIRIADG-- 335 (497)
T ss_pred ccce---EEEecCCCCCHHHHHHHHHHcCCCceE-EeecCcccCCcceeccCccccccCCCccc-CCCCc-eEEEECC--
Confidence 5666 555555 455667788888888888 8999999953221110 00 1111222 22332 2233321
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---cccc-------------ceecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY-------------RYRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy-------------RYriGDvVrv~ 434 (520)
+.. .+..|+..||+|+.. .|.| .|++||+++..
T Consensus 336 -------------~~~-----~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~ 384 (497)
T PRK06145 336 -------------AGR-----WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLD 384 (497)
T ss_pred -------------CCC-----CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEc
Confidence 122 456788899999863 3444 39999999886
No 24
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.50 E-value=0.0027 Score=70.25 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=56.4
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCC---CCCCCceeeeeCCceEEEEeeCCc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS---LPPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~---~p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
+++++ .+++|+ .......+++.+ +++++ ..||+||+...+-..+. ..++..+ ...|+ ..++.++.+.
T Consensus 335 ~~~lr---~i~~gg~~l~~~~~~~~~~~~-~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~G-~~~~~-~~~~i~d~~~ 407 (573)
T PRK05605 335 LSGVR---NAFSGAMALPVSTVELWEKLT-GGLLV-EGYGLTETSPIIVGNPMSDDRRPGYVG-VPFPD-TEVRIVDPED 407 (573)
T ss_pred chhcc---EEEECCCcCCHHHHHHHHHHh-CCCee-cccccchhchhhhcCCcccCCcCCccc-cCCCC-CEEEEEcCCC
Confidence 35677 555555 444555666656 46777 89999998422111111 1111112 23333 3445554331
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---cccc-------------ceecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY-------------RYRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy-------------RYriGDvVrv~ 434 (520)
. +. .+..|+..||+|+.. .|.| .|++||+++..
T Consensus 408 ~-------------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~ 456 (573)
T PRK05605 408 P-------------DE-----TMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVME 456 (573)
T ss_pred C-------------Cc-----cCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEc
Confidence 1 12 567788899999753 3333 49999999986
No 25
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=97.49 E-value=0.0043 Score=68.40 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=55.6
Q ss_pred CCCceEEEEEcCC-hHHHHHHHHhHhCCCCcccCccccCcceeeecCC-CCCCCCCceeeeeCCceEEEEeeCCccccCC
Q 010023 311 PNAKYVYSIMTGS-MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVD-PSLPPEDVTFAVIPTFSYFEFIPIHRRKQDC 388 (520)
Q Consensus 311 P~L~~i~~~~tG~-~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~-~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~ 388 (520)
++++ .+.+|+ ....++.+++.+ +++++ ..||+||+...+-.. +...++..+. ..+ ..-.+++..+
T Consensus 294 ~~l~---~~~~g~~~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~vG~-~~~-~~~~~i~d~~------ 360 (542)
T PRK06155 294 HRVR---VALGPGVPAALHAAFRERF-GVDLL-DGYGSTETNFVIAVTHGSQRPGSMGR-LAP-GFEARVVDEH------ 360 (542)
T ss_pred CceE---EEEEcCCCHHHHHHHHHHc-CCCEE-eeecccccCccccCCCCCCCCCCcCc-cCC-CceEEEECCC------
Confidence 4555 333444 444556666666 57888 999999984222111 1111221221 222 2334444321
Q ss_pred CCCCCCCCCCCccccCCCCCCCeEEEEEeecc------cc-------------cceecCCeEeee
Q 010023 389 NSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT------GL-------------YRYRLGDVVEVA 434 (520)
Q Consensus 389 ~~~~~~~~~~~~l~l~ele~G~~YelViTt~~------GL-------------yRYriGDvVrv~ 434 (520)
++ ++..|+..||+|+... |. -+|++||++++.
T Consensus 361 ---------~~-----~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~ 411 (542)
T PRK06155 361 ---------DQ-----ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRD 411 (542)
T ss_pred ---------CC-----CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEc
Confidence 23 6778889999998752 32 269999999986
No 26
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=97.48 E-value=0.0045 Score=68.59 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=20.9
Q ss_pred cceeeccccCCCCccceeecChhhHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+...||||| |.||-+..|...+-
T Consensus 207 ~a~i~~TSGTT-G~PKgV~~s~~~l~ 231 (570)
T PRK04319 207 GAILHYTSGST-GKPKGVLHVHNAML 231 (570)
T ss_pred CEEEEeCCCCC-CCCCEEEEecHHHH
Confidence 44777899999 89999999988653
No 27
>PRK09088 acyl-CoA synthetase; Validated
Probab=97.47 E-value=0.0018 Score=70.00 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.8
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
.+.+...||||| |+||-++.|.+.+.
T Consensus 136 ~~~~i~~TSGTT-G~PK~v~~s~~~l~ 161 (488)
T PRK09088 136 RVSLILFTSGTS-GQPKGVMLSERNLQ 161 (488)
T ss_pred CceEEEeCCCCC-CCCcEEEEehHHHH
Confidence 345788899999 99999999988653
No 28
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=97.46 E-value=0.0028 Score=71.28 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.6
Q ss_pred cceeeccccCCCCccceeecChhhH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+...||||| |+||-+..|+..+
T Consensus 247 ~a~i~~TSGTT-G~PKgV~~s~~~~ 270 (637)
T PRK00174 247 PLFILYTSGST-GKPKGVLHTTGGY 270 (637)
T ss_pred cEEEEECCCCC-CCCceEEeCcchh
Confidence 45788899999 8999999998754
No 29
>PRK06164 acyl-CoA synthetase; Validated
Probab=97.46 E-value=0.0044 Score=67.90 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=22.5
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+.+...||||| |+||-+..|+..+..
T Consensus 181 ~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 208 (540)
T PRK06164 181 DAGALLFTTSGTT-SGPKLVLHRQATLLR 208 (540)
T ss_pred CceEEEEECCCCC-CCCcEEEEehHHHHH
Confidence 3454667799999 899999999987654
No 30
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.45 E-value=0.0012 Score=72.62 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=55.9
Q ss_pred EEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce-eeecCCCCC---CCCCceeeeeCCceEEEEeeCCccccCCCC
Q 010023 318 SIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNVDPSL---PPEDVTFAVIPTFSYFEFIPIHRRKQDCNS 390 (520)
Q Consensus 318 ~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~-igi~~~~~~---p~~~~~~~l~p~~~ffEFip~~~~~~~~~~ 390 (520)
++.+|+ ....++.+++.++++++. ..||+||+. ++....... ..+..+. ..|+ ...+.++.+
T Consensus 294 ~i~~gg~~~~~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~-------- 362 (542)
T PRK07786 294 VLSWGAAPASDTLLRQMAATFPEAQIL-AAFGQTEMSPVTCMLLGEDAIRKLGSVGK-VIPT-VAARVVDEN-------- 362 (542)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCeEE-eeecccccccceEecCcccccccCCCccc-cCCC-ceEEEECCC--------
Confidence 555555 456678888889888888 999999983 332211110 0111122 2222 344555421
Q ss_pred CCCCCCCCCccccCCCCCCCeEEEEEeec---cccc-------------ceecCCeEeee
Q 010023 391 AIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY-------------RYRLGDVVEVA 434 (520)
Q Consensus 391 ~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy-------------RYriGDvVrv~ 434 (520)
.. ++..|+.+||++... .|+| +|++||+++..
T Consensus 363 -------~~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~ 410 (542)
T PRK07786 363 -------MN-----DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQD 410 (542)
T ss_pred -------CC-----CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEc
Confidence 22 567788999999652 3333 29999999986
No 31
>PRK07514 malonyl-CoA synthase; Validated
Probab=97.44 E-value=0.0042 Score=67.18 Aligned_cols=101 Identities=17% Similarity=0.283 Sum_probs=57.2
Q ss_pred CCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCccee-eecC-CCCCCCCCceeeeeCCceEEEEeeCC
Q 010023 308 KLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GVNV-DPSLPPEDVTFAVIPTFSYFEFIPIH 382 (520)
Q Consensus 308 ~lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~i-gi~~-~~~~p~~~~~~~l~p~~~ffEFip~~ 382 (520)
...++++ .+.+|+ ...-.+.+++.+ +.+++ ..||+||+.. ..+. ......+..+ ...|+ .....++.+
T Consensus 266 ~~~~~lr---~~~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~G-~~~~~-~~v~i~d~~ 338 (504)
T PRK07514 266 EAAAHMR---LFISGSAPLLAETHREFQERT-GHAIL-ERYGMTETNMNTSNPYDGERRAGTVG-FPLPG-VSLRVTDPE 338 (504)
T ss_pred cccccee---eEEecCCCCCHHHHHHHHHHh-CCcce-eecccccccccccCCccccccCcccc-cCCCC-cEEEEEECC
Confidence 3456777 666555 333445566666 45777 8999999843 2211 1111111111 12233 333444321
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEee---cccccc--------------eecCCeEeee
Q 010023 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVA 434 (520)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt---~~GLyR--------------YriGDvVrv~ 434 (520)
+.. .+..|+..||+|++ ..|+|+ |++||+++..
T Consensus 339 --------------~~~-----~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~ 388 (504)
T PRK07514 339 --------------TGA-----ELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKID 388 (504)
T ss_pred --------------CCC-----CCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEc
Confidence 122 56788899999987 445553 8999999886
No 32
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.43 E-value=0.0024 Score=69.07 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.9
Q ss_pred cccccceeeccccCCCCccceeecChhhHHH
Q 010023 102 TQEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 102 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
..+.+.+...||||| |.||.++.|...+..
T Consensus 164 ~~~~~a~i~~TSGtT-G~PK~v~~s~~~l~~ 193 (513)
T PRK07656 164 DPDDVADILFTSGTT-GRPKGAMLTHRQLLS 193 (513)
T ss_pred CCCceEEEEeCCCCC-CCCCEEEEecHHHHH
Confidence 444455788999999 999999999886543
No 33
>PRK08316 acyl-CoA synthetase; Validated
Probab=97.43 E-value=0.0037 Score=67.83 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.8
Q ss_pred ccccceeeccccCCCCccceeecChhhHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
.+.+.+...||||| |+||-+..|.+.+.
T Consensus 170 ~~~~a~i~~TSGtT-G~PK~v~~s~~~l~ 197 (523)
T PRK08316 170 DDDLAQILYTSGTE-SLPKGAMLTHRALI 197 (523)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 34455888999999 99999999988654
No 34
>PRK05852 acyl-CoA synthetase; Validated
Probab=97.42 E-value=0.005 Score=67.52 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.3
Q ss_pred ceeeccccCCCCccceeecChhhHHH
Q 010023 107 TKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 107 ~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
.+...||||| |.||-|+.|++.+..
T Consensus 179 a~il~TSGTT-G~PKgv~~~~~~~~~ 203 (534)
T PRK05852 179 AMIMFTGGTT-GLPKMVPWTHANIAS 203 (534)
T ss_pred eEEEeCCCCC-CCCcEEEecHHHHHH
Confidence 4778899999 899999999987643
No 35
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=97.40 E-value=0.0064 Score=66.83 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=23.1
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |+||-++.|++.+..
T Consensus 182 ~~~a~i~~TSGTT-G~PKgV~~s~~~l~~ 209 (536)
T PRK10946 182 DEVAFFQLSGGST-GTPKLIPRTHNDYYY 209 (536)
T ss_pred CCeEEEEeCCCCC-CCCcEEEEehHHHHH
Confidence 3355778899999 999999999997644
No 36
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.39 E-value=0.0011 Score=80.61 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=22.9
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+.+...||||| |+||-+.+|+..+..
T Consensus 598 ~~~a~i~~TSGST-G~PKgV~~~h~~l~~ 625 (1296)
T PRK10252 598 HHTAYIIFTSGST-GRPKGVMVGQTAIVN 625 (1296)
T ss_pred CCeEEEEECCCCC-CCCCEEEeccHHHHH
Confidence 3455778899999 899999999987644
No 37
>PRK06839 acyl-CoA synthetase; Validated
Probab=97.39 E-value=0.002 Score=69.41 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.3
Q ss_pred ccceeeccccCCCCccceeecChhhH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
.+.+...||||| |.||-+.+|...+
T Consensus 150 ~~~~i~~TSGTT-G~PK~v~~s~~~l 174 (496)
T PRK06839 150 ASFIICYTSGTT-GKPKGAVLTQENM 174 (496)
T ss_pred CcEEEEeCCCCC-CCCcEEEEEhHHH
Confidence 345778899999 8999999999865
No 38
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=97.35 E-value=0.0016 Score=72.85 Aligned_cols=100 Identities=26% Similarity=0.438 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCCCC
Q 010023 285 YLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPP 362 (520)
Q Consensus 285 ~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~ 362 (520)
-..++|++.+++ +++ -..+|+ ..+....+=+-. ++|+. .|||-||..-++.+++..
T Consensus 342 LVf~Kir~~lGg---------------ri~---~~~sGGa~l~~~~~~f~~~l-Gi~i~-eGYGlTEts~~~~v~~~~-- 399 (613)
T COG1022 342 LVFRKIRDALGG---------------RIR---YALSGGAPLSPELLHFFRSL-GIPIL-EGYGLTETSAVVSVNPPD-- 399 (613)
T ss_pred HHHHHHHHHhCC---------------cEE---EEEecCCcCCHHHHHHHHHc-CCCeE-EEecccccccceEEcccc--
Confidence 345666666554 455 444555 444443332334 49999 999999986554444321
Q ss_pred CCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEee---cccccc--------------e
Q 010023 363 EDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------Y 425 (520)
Q Consensus 363 ~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt---~~GLyR--------------Y 425 (520)
.|.+- .-+.+++-.|++.+++.||.|-. ..|.|. +
T Consensus 400 --------------~~~~g--------------tvG~p~p~~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf 451 (613)
T COG1022 400 --------------RFVLG--------------TVGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWF 451 (613)
T ss_pred --------------CcccC--------------CcCCcCCCceEEEccCceEEEecchhcchhcCChHHHhhhccccCCc
Confidence 11211 23677888899999999999976 678885 8
Q ss_pred ecCCeEeee
Q 010023 426 RLGDVVEVA 434 (520)
Q Consensus 426 riGDvVrv~ 434 (520)
++||+..++
T Consensus 452 ~TGDlg~~d 460 (613)
T COG1022 452 RTGDLGELD 460 (613)
T ss_pred ccCceeEEc
Confidence 999999988
No 39
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=97.33 E-value=0.004 Score=67.30 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 309 LWPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 309 lWP~L~~i~~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
-+|.++.+ +.+|. .....+.+.+.+++++++ .+||+||+.
T Consensus 256 ~~~~l~~~--~~~G~~~~~~~~~~~~~~~~~~~~~-~~yG~tE~~ 297 (502)
T TIGR01734 256 NYPHLTHF--LFCGEELPVKTAKALLERFPKATIY-NTYGPTEAT 297 (502)
T ss_pred cCCcccEE--EEcCCcCCHHHHHHHHHHCCCcEEE-eCccCCcce
Confidence 45677732 23343 556667778888888888 999999964
No 40
>PRK12467 peptide synthase; Provisional
Probab=97.31 E-value=0.0025 Score=85.65 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=24.4
Q ss_pred ccccceeeccccCCCCccceeecChhhHHHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~ 133 (520)
++-+.+...||||| |+||-+.+|+..+...
T Consensus 655 ~~~~a~iiyTSGST-G~PKgV~~th~~l~~~ 684 (3956)
T PRK12467 655 PDNLAYVIYTSGST-GQPKGVAISHGALANY 684 (3956)
T ss_pred CCCeEEEEECCCCC-CCcCEEEEecHHHHHH
Confidence 44456888899999 9999999999876543
No 41
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=97.29 E-value=0.0062 Score=68.32 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.4
Q ss_pred cceeeccccCCCCccceeecChhhH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+...||||| |+||-+..|...+
T Consensus 238 ~a~il~TSGTT-G~PKgV~~s~~~~ 261 (625)
T TIGR02188 238 PLFILYTSGST-GKPKGVLHTTGGY 261 (625)
T ss_pred ceEEEecCCCC-CCCCeEEECccHh
Confidence 44788899999 8999999998754
No 42
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=97.28 E-value=0.0028 Score=71.15 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=22.4
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+.+...||||| |+||-+..|...+.
T Consensus 209 ~d~a~ilyTSGTT-G~PKgV~~sh~~l~ 235 (614)
T PRK08180 209 DTIAKFLFTSGST-GLPKAVINTHRMLC 235 (614)
T ss_pred CceEEEEECCCCC-CCCCEEEeehHHHH
Confidence 4455788899999 99999999988654
No 43
>PRK12583 acyl-CoA synthetase; Provisional
Probab=97.28 E-value=0.0055 Score=67.25 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.2
Q ss_pred ccceeeccccCCCCccceeecChhhHHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
-+.+...||||| |.||-+..|...+..
T Consensus 202 ~~a~i~~TSGsT-G~PK~v~~s~~~l~~ 228 (558)
T PRK12583 202 DPINIQYTSGTT-GFPKGATLSHHNILN 228 (558)
T ss_pred CcEEEEECCCCC-CCCceEEeeHHHHHH
Confidence 345788899999 999999999987643
No 44
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=97.27 E-value=0.0091 Score=64.70 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.8
Q ss_pred cceeeccccCCCCccceeecChhhHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+...||||| |.||-++.|...+..
T Consensus 163 ~~~i~~TSGTT-G~PK~v~~t~~~l~~ 188 (515)
T TIGR03098 163 MAAILYTSGST-GRPKGVVLSHRNLVA 188 (515)
T ss_pred eEEEEECCCCC-CCCceEEEecHHHHH
Confidence 44678899999 899999999987643
No 45
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.26 E-value=0.0044 Score=74.18 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=22.8
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |+||-+..|++.+..
T Consensus 782 ~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 809 (1146)
T PRK08633 782 DDTATIIFSSGSE-GEPKGVMLSHHNILS 809 (1146)
T ss_pred CCEEEEEECCCCC-CCCceEEechHHHHH
Confidence 3455788899999 999999999987643
No 46
>PRK07867 acyl-CoA synthetase; Validated
Probab=97.25 E-value=0.003 Score=69.54 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=21.6
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
-+.+...||||| |+||-+..|.+.+.
T Consensus 153 ~~~~i~~TSGTT-G~PKgv~~s~~~l~ 178 (529)
T PRK07867 153 DLFMLIFTSGTS-GDPKAVRCTHRKVA 178 (529)
T ss_pred ceEEEEECCCCC-CCCcEEEecHHHHH
Confidence 344778899999 89999999998764
No 47
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=97.24 E-value=0.0041 Score=68.86 Aligned_cols=38 Identities=24% Similarity=0.486 Sum_probs=27.9
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
.++++ .+.+|+ ...-++.+++.|++++++ ..||+||+.
T Consensus 287 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~~~-~~YG~TE~~ 327 (563)
T PLN02860 287 FPSVR---KILNGGGSLSSRLLPDAKKLFPNAKLF-SAYGMTEAC 327 (563)
T ss_pred cccee---EEEeCCCcCCHHHHHHHHHhcCCCcee-cCCCccccC
Confidence 35666 666665 444556777888888988 999999974
No 48
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=97.22 E-value=0.0081 Score=66.21 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.5
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+-+.+...||||| |.||-+.+|...+-
T Consensus 204 ~~~a~il~TSGTT-G~PK~v~~s~~~l~ 230 (557)
T PRK07059 204 DDVAFLQYTGGTT-GVSKGATLLHRNIV 230 (557)
T ss_pred CceEEEEeCCCCC-CCCcEEEeecHHHH
Confidence 3455888899999 89999999998663
No 49
>PRK13382 acyl-CoA synthetase; Provisional
Probab=97.21 E-value=0.0053 Score=67.54 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=55.6
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCC---CCCCCceeeeeCCceEEEEeeCCc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS---LPPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~---~p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
+++++ .+..|+ ...-+..+++.+| .+++ .+||+||+....-..+. ..++..+. ..|+ .-++.++.+
T Consensus 311 ~~~lr---~i~~gG~~l~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~-p~~~-~~~~i~d~~- 382 (537)
T PRK13382 311 GRSLR---FAAASGSRMRPDVVIAFMDQFG-DVIY-NNYNATEAGMIATATPADLRAAPDTAGR-PAEG-TEIRILDQD- 382 (537)
T ss_pred cccee---EEEEcCCCCCHHHHHHHHHHcC-CcEE-ecccccccCcceecChhHhccCCCCccc-cCcC-cEEEEECCC-
Confidence 35677 555555 5556777777785 4776 99999998422111110 00111121 2222 233444321
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecccc-------------cceecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGL-------------YRYRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~GL-------------yRYriGDvVrv~ 434 (520)
.+ ++..|+..||+|++.+-+ -.|++||+++..
T Consensus 383 --------------~~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~ 427 (537)
T PRK13382 383 --------------FR-----EVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLD 427 (537)
T ss_pred --------------CC-----CCCCCCeeEEEEEcCCcccCccccchhhccCCCEeeCceEEEe
Confidence 22 567888999999874211 158999999987
No 50
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=97.21 E-value=0.0039 Score=68.44 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=21.7
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+-+.+...||||| |.||-+..+.+.+.
T Consensus 195 ~~~a~i~~TSGtT-G~PK~v~~s~~~~~ 221 (538)
T TIGR03208 195 DDVTQLIYTSGTT-GEPKGVMHTANTLF 221 (538)
T ss_pred CCeEEEEECCCCC-CCCcEEEeehHHHH
Confidence 3455777899999 89999999987653
No 51
>PLN02614 long-chain acyl-CoA synthetase
Probab=97.18 E-value=0.012 Score=66.98 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=22.7
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |.||-+..|+..+..
T Consensus 223 ~d~a~I~yTSGTT-G~PKGV~lth~nl~~ 250 (666)
T PLN02614 223 SDICTIMYTSGTT-GDPKGVMISNESIVT 250 (666)
T ss_pred CceEEEEEcCCCC-CCCcEEEEecHHHHH
Confidence 3455778899999 899999999986643
No 52
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.17 E-value=0.01 Score=65.52 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=23.2
Q ss_pred ccccceeeccccCCCCccceeecChhhHHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
.+-+.+...||||| |.||-+..|...+..
T Consensus 205 ~~~~a~i~~TSGtT-G~PK~v~~t~~~l~~ 233 (560)
T PRK08974 205 PEDLAFLQYTGGTT-GVAKGAMLTHRNMLA 233 (560)
T ss_pred CCCeEEEEECCCCC-CCCcEEEEchHHHHH
Confidence 33455778899999 899999999987643
No 53
>PRK07787 acyl-CoA synthetase; Validated
Probab=97.17 E-value=0.011 Score=63.68 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.0
Q ss_pred cceeeccccCCCCccceeecChhhHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+...||||| |.||-|..|+..+..
T Consensus 130 ~a~i~~TSGTT-G~PK~v~~t~~~l~~ 155 (471)
T PRK07787 130 PALIVYTSGTT-GPPKGVVLSRRAIAA 155 (471)
T ss_pred eEEEEECCCCC-CCCCEEEEeHHHHHH
Confidence 44778899999 899999999987654
No 54
>PLN02736 long-chain acyl-CoA synthetase
Probab=97.15 E-value=0.0063 Score=68.83 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=22.2
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+-+.+...||||| |+||-+..|++.+-
T Consensus 221 dd~a~IlyTSGTT-G~PKGV~lsh~~l~ 247 (651)
T PLN02736 221 EDVATICYTSGTT-GTPKGVVLTHGNLI 247 (651)
T ss_pred cceEEEEEcCCCC-CCCcEEEEecHHHH
Confidence 3455778899999 89999999998653
No 55
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.14 E-value=0.0059 Score=66.94 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=22.3
Q ss_pred ccceeeccccCCCCccceeecChhhHHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
-+.+...||||| |.||-++.|...+..
T Consensus 191 ~~a~i~~TSGtT-G~PK~v~~s~~~l~~ 217 (546)
T PRK08314 191 DLAVLPYTSGTT-GVPKGCMHTHRTVMA 217 (546)
T ss_pred CeEEEEeCCCCC-CCCcEEEEecHHHHH
Confidence 344778899999 999999999987643
No 56
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.13 E-value=0.0021 Score=67.27 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=27.2
Q ss_pred CCCCCCeEEEEE---eecccccc--------------eecCCeEeee
Q 010023 405 QVKLGQEYEIVL---TSFTGLYR--------------YRLGDVVEVA 434 (520)
Q Consensus 405 ele~G~~YelVi---Tt~~GLyR--------------YriGDvVrv~ 434 (520)
+|.+||..+|.. =|..|.|| ||+||+|+.+
T Consensus 379 pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~ 425 (542)
T COG1021 379 PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRD 425 (542)
T ss_pred CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEec
Confidence 789999999987 47899998 9999999988
No 57
>PRK12467 peptide synthase; Provisional
Probab=97.11 E-value=0.0058 Score=82.24 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=24.1
Q ss_pred ccccceeeccccCCCCccceeecChhhHHHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~ 133 (520)
++-+.+...||||| |+||-+.+|++.+...
T Consensus 3236 ~~~~a~ii~TSGST-G~PKgV~~~h~~l~~~ 3265 (3956)
T PRK12467 3236 GENLAYVIYTSGST-GKPKGVGVRHGALANH 3265 (3956)
T ss_pred CCceEEEEEccCCC-CCcceeeehhHHHHHH
Confidence 34456888999999 8999999999876543
No 58
>PRK12316 peptide synthase; Provisional
Probab=97.10 E-value=0.0034 Score=86.01 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=22.9
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |+||-+.+|++.+..
T Consensus 4694 ~~~a~ii~TSGST-G~PKgV~~~h~~l~~ 4721 (5163)
T PRK12316 4694 DNLAYVIYTSGST-GRPKGVAVSHGSLVN 4721 (5163)
T ss_pred CceEEEEECCCCC-CCCCEeeeccHHHHH
Confidence 3455788899999 899999999987644
No 59
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=97.09 E-value=0.011 Score=65.97 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=22.9
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+.+...||||| |.||-+..|+..+..
T Consensus 199 ~~~a~il~TSGTT-G~PKgV~~sh~~l~~ 226 (600)
T PRK08279 199 KDTAFYIYTSGTT-GLPKAAVMSHMRWLK 226 (600)
T ss_pred cccEEEEEcCCCC-CCCcEEEEeHHHHHH
Confidence 3345778899999 899999999987644
No 60
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=97.06 E-value=0.013 Score=64.46 Aligned_cols=26 Identities=38% Similarity=0.401 Sum_probs=21.7
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
-+.+...||||| |.||-++.|+..+.
T Consensus 185 ~~a~il~TSGTT-G~PKgv~~s~~~l~ 210 (546)
T PLN02330 185 DLCALPFSSGTT-GISKGVMLTHRNLV 210 (546)
T ss_pred cEEEEEeCCCCc-CCCcEEEEehHHHH
Confidence 345778899999 99999999988664
No 61
>PRK07470 acyl-CoA synthetase; Validated
Probab=97.06 E-value=0.016 Score=63.24 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=23.2
Q ss_pred ccccceeeccccCCCCccceeecChhhHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
.+.+.+...||||| |.||-++.|...+.
T Consensus 162 ~~~~a~i~~TSGTT-G~PK~v~~s~~~l~ 189 (528)
T PRK07470 162 HDDPCWFFFTSGTT-GRPKAAVLTHGQMA 189 (528)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEehhhHH
Confidence 34455888999999 99999999998763
No 62
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=97.04 E-value=0.03 Score=61.87 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.2
Q ss_pred cceeeccccCCCCccceeecChhhHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+...||||| |.||-+..|...+.
T Consensus 209 ~a~i~~TSGTT-G~PKgv~~s~~~l~ 233 (562)
T PRK12492 209 IAVLQYTGGTT-GLAKGAMLTHGNLV 233 (562)
T ss_pred eEEEEeCCCCC-CCCceEEEechhHH
Confidence 45778899999 89999999988653
No 63
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=97.03 E-value=0.0053 Score=75.40 Aligned_cols=28 Identities=29% Similarity=0.214 Sum_probs=23.0
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |+||-+..|++.+..
T Consensus 415 ~d~a~ii~TSGST-G~PKgV~~sh~~l~~ 442 (1389)
T TIGR03443 415 DSNPTLSFTSGSE-GIPKGVLGRHFSLAY 442 (1389)
T ss_pred CCceEEEECCCCC-CCCCEEEeccHHHHH
Confidence 3355788899999 999999999987644
No 64
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=97.01 E-value=0.012 Score=66.71 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.0
Q ss_pred cceeeccccCCCCccceeecChhh
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHS 129 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~ 129 (520)
+.+...||||| |+||-|..|...
T Consensus 256 ~~~IlyTSGTT-G~PKgV~~sh~~ 278 (647)
T PTZ00237 256 PLYILYTSGTT-GNSKAVVRSNGP 278 (647)
T ss_pred cEEEEEcCCCC-CCCCeEEEcCcH
Confidence 44888899999 999999999874
No 65
>PRK13388 acyl-CoA synthetase; Provisional
Probab=97.00 E-value=0.0088 Score=65.93 Aligned_cols=29 Identities=28% Similarity=0.198 Sum_probs=23.3
Q ss_pred cccccceeeccccCCCCccceeecChhhHH
Q 010023 102 TQEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 102 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
.++.+.+...||||| |+||-+..|...+.
T Consensus 148 ~~~~~a~i~~TSGTT-G~PKgv~~s~~~~~ 176 (540)
T PRK13388 148 DAMDPFMLIFTSGTT-GAPKAVRCSHGRLA 176 (540)
T ss_pred CCCCeEEEEECCCCC-CCCCEEEecHHHHH
Confidence 345566788899999 99999999998653
No 66
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=96.98 E-value=0.013 Score=64.47 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=22.7
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |+||-|..|...+..
T Consensus 208 ~~~~~i~~TSGTT-G~PK~v~~s~~~l~~ 235 (560)
T PRK08751 208 DDIAFLQYTGGTT-GVAKGAMLTHRNLVA 235 (560)
T ss_pred ccEEEEEcCCCCC-CCCCEEEEccHHHHH
Confidence 3355778899999 999999999987643
No 67
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=96.98 E-value=0.015 Score=65.31 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.3
Q ss_pred ccceeeccccCCCCccceeecChhhH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
-+.+...||||| |+||-+..+...+
T Consensus 234 d~a~il~TSGTT-G~PKgV~~~~~~~ 258 (629)
T PRK10524 234 EPSYILYTSGTT-GKPKGVQRDTGGY 258 (629)
T ss_pred CceEEEeecCCC-CCCceEEECCcHH
Confidence 345788899999 8999999887643
No 68
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=96.96 E-value=0.014 Score=63.40 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce-eeecC--CCCCCCCCceeeeeCCceEEEEeeCCcc
Q 010023 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNV--DPSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 311 P~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~-igi~~--~~~~p~~~~~~~l~p~~~ffEFip~~~~ 384 (520)
++++ .+++|+ ...-++.+++.+ +++++ .+||+||+. ++... +....++..+. ..|+.. ++.+..+
T Consensus 271 ~~l~---~v~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~-~~i~d~~-- 341 (509)
T PRK12406 271 SSLR---HVIHAAAPCPADVKRAMIEWW-GPVIY-EYYGSTESGAVTFATSEDALSHPGTVGK-AAPGAE-LRFVDED-- 341 (509)
T ss_pred Ccee---EEEEcCCCCCHHHHHHHHHHc-CCcEE-eeccccccCceEecCcccccccCCCcCc-cCCCcE-EEEECCC--
Confidence 4666 555555 456667777777 45776 999999984 32211 10111122232 233332 3333321
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc----ccc-------------ceecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT----GLY-------------RYRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~----GLy-------------RYriGDvVrv~ 434 (520)
.+ .+..|+..||+++..+ |+| -|++||+++..
T Consensus 342 -------------~~-----~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~ 390 (509)
T PRK12406 342 -------------GR-----PLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLD 390 (509)
T ss_pred -------------CC-----CCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEc
Confidence 22 5678889999997643 443 27899999885
No 69
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=96.96 E-value=0.023 Score=64.50 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=21.7
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
-+.+...||||| |.||-+..|+..+-
T Consensus 221 d~a~i~yTSGTT-G~PKGV~lth~~l~ 246 (660)
T PLN02861 221 DICTIMYTSGTT-GEPKGVILTNRAII 246 (660)
T ss_pred ceEEEEecCCCC-CCCCEEEEecHHHH
Confidence 345778899999 99999999998653
No 70
>PRK12316 peptide synthase; Provisional
Probab=96.93 E-value=0.0082 Score=82.49 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=24.0
Q ss_pred cccccceeeccccCCCCccceeecChhhHHH
Q 010023 102 TQEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 102 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
.++-+.+...||||| |+||-+.+|...+..
T Consensus 653 ~~~~~a~ii~TSGST-G~PKgV~~~h~~l~~ 682 (5163)
T PRK12316 653 NPENLAYVIYTSGST-GKPKGAGNRHRALSN 682 (5163)
T ss_pred CCCCeEEEEECCCcC-CCCCEeeEcCHHHHH
Confidence 344455788899999 999999999987654
No 71
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=96.89 E-value=0.039 Score=59.35 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=20.6
Q ss_pred ccceeeccccCCCCccceeecChhhH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
-+.+...||||| |.||.|+.|...+
T Consensus 142 ~~a~i~~TSGtT-G~PK~v~~s~~~~ 166 (483)
T PRK03640 142 EVATIMYTSGTT-GKPKGVIQTYGNH 166 (483)
T ss_pred CeEEEEeCCCcC-CCCcEEEEecHHH
Confidence 345677899999 9999999998754
No 72
>PRK13383 acyl-CoA synthetase; Provisional
Probab=96.89 E-value=0.02 Score=62.45 Aligned_cols=98 Identities=20% Similarity=0.185 Sum_probs=53.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCC---CCCCceeeeeCCceEEEEeeCCc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSL---PPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~---p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
.|.++ .+++|+ ...-++++.+.+| +++. ..||.||.....-..+.. .++..+. ..|+ .-++.+..
T Consensus 291 ~~~lr---~i~~gG~~l~~~~~~~~~~~~g-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~-- 361 (516)
T PRK13383 291 LPQLR---VVMSSGDRLDPTLGQRFMDTYG-DILY-NGYGSTEVGIGALATPADLRDAPETVGK-PVAG-CPVRILDR-- 361 (516)
T ss_pred CCceE---EEEECCCCCCHHHHHHHHHHcC-chhh-hcccccccccceeccccccccCCCcccC-CCCC-cEEEEECC--
Confidence 45666 555555 4555667777774 5777 999999984321111110 0111111 1222 22344432
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecccccc-------------eecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYR-------------YRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~GLyR-------------YriGDvVrv~ 434 (520)
+++ ++..|+..||+|+...-.-| |++||+.+..
T Consensus 362 -------------~~~-----~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~d 407 (516)
T PRK13383 362 -------------NNR-----PVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLD 407 (516)
T ss_pred -------------CCC-----CCCCCCceEEEEecCcccccccCCchhheecCceecceeEEEc
Confidence 122 45678888999976443333 4599998876
No 73
>PRK12582 acyl-CoA synthetase; Provisional
Probab=96.80 E-value=0.0066 Score=68.27 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=21.9
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+.+...||||| |+||-+..|+..+.
T Consensus 220 ~d~a~i~yTSGTT-G~PKgV~~th~~l~ 246 (624)
T PRK12582 220 DTVAKYLFTSGST-GMPKAVINTQRMMC 246 (624)
T ss_pred CceEEEEEcCCCC-CCCceEEeeHHHHH
Confidence 3345778899999 89999999988654
No 74
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=96.77 E-value=0.013 Score=66.90 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=22.2
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+-+.....||||| |+||-+..|++.+-
T Consensus 250 dd~a~I~yTSGTT-G~PKGV~lth~~l~ 276 (696)
T PLN02387 250 NDIAVIMYTSGST-GLPKGVMMTHGNIV 276 (696)
T ss_pred cceEEEEecCCCC-CCCCEEEEEcHHHH
Confidence 3455778899999 89999999998654
No 75
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=96.75 E-value=0.032 Score=64.46 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=22.3
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+-+.....||||| |.||=+..|+..+-
T Consensus 304 dd~a~IiYTSGTT-G~PKGVmlTH~nl~ 330 (746)
T PTZ00342 304 DFITSIVYTSGTS-GKPKGVMLSNKNLY 330 (746)
T ss_pred cceEEEEEcCCCC-CCCCEEEEccHHHH
Confidence 3355788999999 99999999998653
No 76
>PRK08315 AMP-binding domain protein; Validated
Probab=96.74 E-value=0.04 Score=60.57 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.4
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+.+...||||| |.||-++.|...+.
T Consensus 199 ~~~a~i~~TSGtT-G~PK~v~~s~~~l~ 225 (559)
T PRK08315 199 DDPINIQYTSGTT-GFPKGATLTHRNIL 225 (559)
T ss_pred CCcEEEEEcCCCC-CCcceEEeeHHHHH
Confidence 3345788899999 99999999998663
No 77
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.74 E-value=0.023 Score=62.73 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=21.9
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
.+.++..||||| |.||-|..|.+.+.
T Consensus 207 ~~a~i~~TSGTT-G~PK~v~~s~~~l~ 232 (563)
T PRK06710 207 DLALLQYTGGTT-GFPKGVMLTHKNLV 232 (563)
T ss_pred CEEEEEcCCCCC-CCCceEEEehHHHH
Confidence 345788899999 89999999988764
No 78
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=96.71 E-value=0.044 Score=61.69 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=21.2
Q ss_pred cccceeeccccCCCCccceeecChhhH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+.+...||||| |+||-|..+...+
T Consensus 232 ~~~a~ilyTSGTT-G~PKgV~~sh~~~ 257 (628)
T TIGR02316 232 NEPSYILYTSGTT-GKPKGVQRDVGGY 257 (628)
T ss_pred CCcEEEEECCCCC-CCCceEEECCcHH
Confidence 3445888899999 8999999887754
No 79
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=96.71 E-value=0.038 Score=60.51 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=22.8
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |.||-+..|+..+..
T Consensus 183 ~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 210 (527)
T TIGR02275 183 DEVAFFQLSGGST-GTPKLIPRTHNDYYY 210 (527)
T ss_pred CccEEEEeCCCCC-CCCceeeeehHHHHH
Confidence 3355788899999 999999999987643
No 80
>PRK08308 acyl-CoA synthetase; Validated
Probab=96.68 E-value=0.018 Score=61.04 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=21.5
Q ss_pred cceeeccccCCCCccceeecChhhHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
..+...||||| |+||-+..|.+.+..
T Consensus 103 ~~~i~~TSGtT-G~PKgv~~s~~~l~~ 128 (414)
T PRK08308 103 PSLLQYSSGTT-GEPKLIRRSWTEIDR 128 (414)
T ss_pred ceEEEECCCCC-CCCcEEEEehHhHHH
Confidence 44777899999 999999999886643
No 81
>PRK05857 acyl-CoA synthetase; Validated
Probab=96.65 E-value=0.02 Score=63.11 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=22.5
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+.++..||||| |.||-|..|+..+.
T Consensus 169 ~~~a~i~~TSGTT-G~PKgV~~sh~~~~ 195 (540)
T PRK05857 169 EDPLAMIFTSGTT-GEPKAVLLANRTFF 195 (540)
T ss_pred CCeEEEEeCCCCC-CCCCeEEEechhhh
Confidence 3455888999999 99999999998653
No 82
>PRK05691 peptide synthase; Validated
Probab=96.51 E-value=0.07 Score=72.78 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=22.6
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |+||-+.++++.+..
T Consensus 2333 ~~~a~ii~TSGST-G~PKGV~~~h~~l~~ 2360 (4334)
T PRK05691 2333 QHQAYLIYTSGST-GKPKGVVVSHGEIAM 2360 (4334)
T ss_pred CCcEEEEeCCCCC-CCCCEEEEecHHHHH
Confidence 3455788899999 999999999886543
No 83
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=96.51 E-value=0.022 Score=60.31 Aligned_cols=29 Identities=38% Similarity=0.535 Sum_probs=23.1
Q ss_pred ccccceeeccccCCCCccceeecChhhHHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
.+.+.++..||||| |.||.|+.|.+.+..
T Consensus 110 ~~~~~~i~~TSGtT-G~PK~v~~s~~~~~~ 138 (436)
T TIGR01923 110 MDQIATLMFTSGTT-GKPKAVPHTFRNHYA 138 (436)
T ss_pred cCceEEEEeCCCCC-CCCcEEEEehHHHHH
Confidence 34455788999999 899999999986543
No 84
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.50 E-value=0.048 Score=60.32 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=28.0
Q ss_pred CCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 312 ~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
+|+ ++++|+ -..-++++++.++..++. .+||.||+.
T Consensus 292 ~lr---~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~TE~~ 330 (534)
T COG0318 292 SLR---LVLSGGAPLPPELLERFEERFGPIAIL-EGYGLTETS 330 (534)
T ss_pred ceE---EEEecCCcCCHHHHHHHHHHhCCCceE-EeecccccC
Confidence 466 778777 356677788888776777 999999995
No 85
>PRK06188 acyl-CoA synthetase; Validated
Probab=96.45 E-value=0.029 Score=61.17 Aligned_cols=26 Identities=42% Similarity=0.419 Sum_probs=22.0
Q ss_pred cceeeccccCCCCccceeecChhhHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+...||||| |.||-+..|...+..
T Consensus 170 ~a~i~~TSGtT-G~pk~v~~s~~~l~~ 195 (524)
T PRK06188 170 IAGLAYTGGTT-GKPKGVMGTHRSIAT 195 (524)
T ss_pred eEEEEeCCCCC-CCCceeeeehHHHHH
Confidence 55778899999 899999999987543
No 86
>PLN02654 acetate-CoA ligase
Probab=96.44 E-value=0.063 Score=61.09 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=20.7
Q ss_pred ccceeeccccCCCCccceeecChhhH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
-+.+...||||| |+||-|..|...+
T Consensus 276 d~~~ilyTSGTT-G~PKgVv~sh~~~ 300 (666)
T PLN02654 276 DPLFLLYTSGST-GKPKGVLHTTGGY 300 (666)
T ss_pred CceEEEecCCCC-CCCceEEecccHH
Confidence 344788899999 8999999988754
No 87
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=96.40 E-value=0.11 Score=59.17 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=22.9
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.....||||| |+||-+..|++.+..
T Consensus 220 ~d~a~iiyTSGTT-G~PKGV~lth~~~~~ 247 (660)
T PLN02430 220 LDICTIMYTSGTS-GDPKGVVLTHEAVAT 247 (660)
T ss_pred CceEEEEECCCCC-CCCCEEEeecHHHHH
Confidence 3455788899999 899999999986643
No 88
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=96.36 E-value=0.087 Score=57.24 Aligned_cols=28 Identities=29% Similarity=0.160 Sum_probs=23.1
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+.+...||||| |+||-+..|...+..
T Consensus 161 ~~~a~i~~TSGTT-G~PK~v~~s~~~~~~ 188 (508)
T TIGR02262 161 DDPAFWLYSSGST-GMPKGVVHTHSNPYW 188 (508)
T ss_pred CCcEEEEeCCCCC-CCCcEEEEechhHHH
Confidence 3455778899999 999999999987644
No 89
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=96.34 E-value=0.13 Score=55.89 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.6
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+.+...||||| |.||-+..|...+.
T Consensus 173 ~~~a~i~~TSGtT-G~PK~v~~t~~~l~ 199 (517)
T PRK08008 173 DDTAEILFTSGTT-SRPKGVVITHYNLR 199 (517)
T ss_pred CCeEEEEECCCCC-CCCcEEEEehHHHH
Confidence 4455888999999 99999999998764
No 90
>PRK05691 peptide synthase; Validated
Probab=96.30 E-value=0.067 Score=73.00 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=28.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceee
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIG 353 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ig 353 (520)
.|.|+ .++.|+ ...-.+++.+.+|+++++ ..||.||+.+.
T Consensus 1387 ~~~lr---~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~ 1429 (4334)
T PRK05691 1387 CTSLR---RLFSGGEALPAELRNRVLQRLPQVQLH-NRYGPTETAIN 1429 (4334)
T ss_pred CCccc---EEEEeecCCCHHHHHHHHHhCCCcEEE-eCCCcChheee
Confidence 46788 555555 444556677778888888 99999998543
No 91
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.29 E-value=0.15 Score=57.33 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=22.1
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+.+...||||| |+||-+..|...+.
T Consensus 180 ~d~a~i~~TSGTT-G~PKgV~~sh~~l~ 206 (631)
T PRK07769 180 DTIAYLQYTSGST-RIPAGVQITHLNLP 206 (631)
T ss_pred CCeEEEEeCCCCC-CCCcEEEEcHHHHH
Confidence 3455778899999 89999999988654
No 92
>PLN03051 acyl-activating enzyme; Provisional
Probab=96.28 E-value=0.091 Score=57.28 Aligned_cols=26 Identities=46% Similarity=0.705 Sum_probs=21.7
Q ss_pred cccceeeccccCCCCccceeecChhhH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+-+.+...||||| |+||-+..|++.+
T Consensus 119 ~d~a~i~yTSGTT-G~PKgV~~sh~~~ 144 (499)
T PLN03051 119 ESVTNILFSSGTT-GEPKAIPWTHLSP 144 (499)
T ss_pred cceEEEEeCCCCC-CCCceEEEccchH
Confidence 3455788899999 8999999999864
No 93
>PLN02246 4-coumarate--CoA ligase
Probab=96.28 E-value=0.044 Score=60.15 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=21.9
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+.+.+...||||| |.||-+..|.+.+.
T Consensus 179 ~~~~~i~~TSGtT-G~PKgv~~s~~~l~ 205 (537)
T PLN02246 179 DDVVALPYSSGTT-GLPKGVMLTHKGLV 205 (537)
T ss_pred cCEEEEEeCCCCC-CCCceEEEeHHHHH
Confidence 3345778899999 89999999988654
No 94
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.19 E-value=0.22 Score=55.18 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=21.8
Q ss_pred cccceeeccccCCCCccceeecChhhH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+.++..||||| |+||-+-.|...+
T Consensus 181 ~~~a~i~~TSGTT-G~PKgv~~s~~~l 206 (576)
T PRK05620 181 TTAAAICYSTGTT-GAPKGVVYSHRSL 206 (576)
T ss_pred cceeEEEECCCCC-CCCceEEEEcHHH
Confidence 4456788899999 8999999998765
No 95
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=96.19 E-value=0.085 Score=57.96 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.5
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
-+.+...||||| |.||-+..|...+.
T Consensus 188 d~a~i~~TSGTT-G~PK~v~~t~~~l~ 213 (547)
T PRK06087 188 ELAAVLFTSGTE-GLPKGVMLTHNNIL 213 (547)
T ss_pred CeEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 345777899999 89999999998653
No 96
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=95.96 E-value=0.21 Score=57.12 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=23.4
Q ss_pred ccccceeeccccCCCCccceeecChhhHHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
++-+.+...||||| |.||-+..|++.+..
T Consensus 263 ~~d~a~iiyTSGTT-G~PKGV~lth~nl~~ 291 (700)
T PTZ00216 263 NDDLALIMYTSGTT-GDPKGVMHTHGSLTA 291 (700)
T ss_pred cccEEEEEEeCCCC-CcCcEEEEEhHHHHH
Confidence 33455778899999 899999999987644
No 97
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=95.94 E-value=0.23 Score=55.01 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCC---CCCCCceeeeeCCceEEEEeeCCc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS---LPPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~---~p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
.+.|+ .+.+.+ -..=+..+.+.+| +||. .+||.||.. ++.+.+. .+++. -..+|... .+-+.++
T Consensus 289 lssLr---~~~SaGEPLnpe~~~w~~~~~g-~~i~-d~~gqTEtg-~~~~~~~~~~~~g~~--g~p~pG~~-~~vvdd~- 358 (528)
T COG0365 289 LSSLR---VLGSAGEPLNPEAFEWFYSALG-VWIL-DIYGQTETG-MGFIAGRPPVKNGSS--GLPLPGYA-VRRVDDE- 358 (528)
T ss_pred chhhe---eeeccCCCCCHHHHHHHHHHhC-CCEe-ccccccccC-ccccCCCCCcCCCCC--CCCCCCce-eEEECCC-
Confidence 34566 444444 3344455667775 8998 999999996 1222221 22221 22333321 2333221
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec-----ccccc-------------eecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF-----TGLYR-------------YRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~-----~GLyR-------------YriGDvVrv~ 434 (520)
++ ++.+|+ .+|||... .|+|+ |.+||.....
T Consensus 359 --------------g~-----~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~D 407 (528)
T COG0365 359 --------------GN-----PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407 (528)
T ss_pred --------------CC-----cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEc
Confidence 33 667788 99999864 35776 9999988777
No 98
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=95.93 E-value=0.11 Score=56.26 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=19.2
Q ss_pred cceeeccccCCCCccceeecChhhH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+...||||| |.||-+..+...+
T Consensus 142 ~a~i~~TSGtT-G~PK~v~~~~~~~ 165 (502)
T PRK08276 142 GADMLYSSGTT-GRPKGIKRPLPGL 165 (502)
T ss_pred ceEEEECCCCC-CCCceEEEccCCc
Confidence 44778899999 8999998776654
No 99
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=95.90 E-value=0.11 Score=57.22 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.0
Q ss_pred ccccceeeccccCCCCccceeecChhhH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
++.+.+...||||| |.||-+.+|+..+
T Consensus 175 ~~~~~~i~~TSGTT-G~PK~v~~s~~~~ 201 (539)
T PRK07008 175 ENQASSLCYTSGTT-GNPKGALYSHRST 201 (539)
T ss_pred cccceEEEECCCCC-CCCcEEEEecHHH
Confidence 34455788899999 9999999998754
No 100
>PLN03102 acyl-activating enzyme; Provisional
Probab=95.88 E-value=0.097 Score=58.32 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.3
Q ss_pred cceeeccccCCCCccceeecChhhH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+...||||| |.||-|..|...+
T Consensus 188 ~~~il~TSGTT-G~PK~v~~s~~~~ 211 (579)
T PLN03102 188 PISLNYTSGTT-ADPKGVVISHRGA 211 (579)
T ss_pred cEEEEeCCcCC-CCCCEEEEecHHH
Confidence 44778899999 9999999998753
No 101
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=95.64 E-value=0.23 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.7
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
-+.+...||||| |+||-+..|+..+.
T Consensus 366 d~a~i~~TSGTT-G~PKgv~~sh~~l~ 391 (718)
T PRK08043 366 DAALILFTSGSE-GHPKGVVHSHKSLL 391 (718)
T ss_pred CeEEEEECCCCC-CCCCEEEEcHHHHH
Confidence 345778899999 89999999998663
No 102
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=95.59 E-value=0.33 Score=54.94 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=20.0
Q ss_pred cceeeccccCCCCccceeecChhhH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+...||||| |+||-+..|...+
T Consensus 265 ~a~ilyTSGTT-G~PKgV~~sh~~~ 288 (655)
T PRK03584 265 PLWILYSSGTT-GLPKCIVHGHGGI 288 (655)
T ss_pred cEEEEecCCCC-CCCceEEECccHH
Confidence 34778899999 8999999998743
No 103
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=95.10 E-value=0.48 Score=52.05 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
.|+++ .+.+|+ ...-++.+++ + +++++ ..||+||+.
T Consensus 293 ~~~lr---~~~~~G~~l~~~~~~~~~~-~-~~~~~-~~YG~tE~~ 331 (542)
T PRK06018 293 LPHLK---MVVCGGSAMPRSMIKAFED-M-GVEVR-HAWGMTEMS 331 (542)
T ss_pred cccce---EEEEcCCCCCHHHHHHHHH-h-CCCeE-eeecccccC
Confidence 36777 445444 4555677777 5 67888 999999984
No 104
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=95.10 E-value=0.29 Score=59.02 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=22.2
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+-+.+...||||| |+||-+..|++.+.
T Consensus 793 ~d~a~i~~TSGTT-G~PKgv~~sh~~~~ 819 (1140)
T PRK06814 793 DDPAVILFTSGSE-GTPKGVVLSHRNLL 819 (1140)
T ss_pred CCcEEEEECCCcc-CCCcEEEecHHHHH
Confidence 3455788899999 89999999998653
No 105
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=95.03 E-value=0.059 Score=59.01 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=21.6
Q ss_pred HHHHhHhCCCCcccCccccCccee-eecCCCCC
Q 010023 329 KKLRHYAGDLPLVSADYGSTESWI-GVNVDPSL 360 (520)
Q Consensus 329 ~~l~~~~g~~pi~~~~Y~aSEg~i-gi~~~~~~ 360 (520)
+++.+.||. +-+.+.||||||-+ -+|++.+.
T Consensus 373 ~~Fv~RFg~-~~IgE~YgaTEgn~~~~N~d~~v 404 (649)
T KOG1179|consen 373 QQFVKRFGI-IKIGEFYGATEGNSNLVNYDGRV 404 (649)
T ss_pred HHHHHHcCC-CeEEEEeccccCcceeeeecCcc
Confidence 456677855 55559999999954 45777543
No 106
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=94.94 E-value=1.1 Score=49.29 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=22.9
Q ss_pred ccccceeeccccCCCCccceeecChhhHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
.+-+.+...||||| |+||-+..|++.+.
T Consensus 151 ~~~~a~i~~TSGtT-G~PKgv~~s~~~~~ 178 (545)
T PRK07768 151 EDDLALMQLTSGST-GSPKAVQITHGNLY 178 (545)
T ss_pred CCCEEEEEeCCCCC-CCCceEEEcHHHHH
Confidence 34455788899999 99999999998663
No 107
>PRK05850 acyl-CoA synthetase; Validated
Probab=94.86 E-value=0.62 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=21.7
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
-+.+...||||| |+||-+..|+..+-
T Consensus 161 d~a~i~~TSGTT-G~PKgV~~sh~~l~ 186 (578)
T PRK05850 161 STAYLQYTSGST-RTPAGVMVSHRNVI 186 (578)
T ss_pred CeEEEEeCCCCC-CCCceEEEeHHHHH
Confidence 355788899999 99999999988653
No 108
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=94.77 E-value=0.28 Score=55.62 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.8
Q ss_pred cceeeccccCCCCccceeecChhh
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHS 129 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~ 129 (520)
+.+...||||| |+||-+..|...
T Consensus 266 ~~~ilyTSGTT-G~PKgV~~sh~~ 288 (652)
T TIGR01217 266 PLWILFSSGTT-GLPKCIVHSAGG 288 (652)
T ss_pred CEEEEEcCCCC-CCCCeEEecccH
Confidence 44788899999 899999999874
No 109
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=93.06 E-value=1.6 Score=48.16 Aligned_cols=201 Identities=15% Similarity=0.180 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcceeeec-CCC
Q 010023 282 PKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIGVN-VDP 358 (520)
Q Consensus 282 ~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~-~~~ 358 (520)
++.-..+++|+..++ +|+ -+.+|+ .++-.+++-..+=.+|+. .|||-||.+-|-. .++
T Consensus 388 ld~lVFkKIr~~lGG---------------~lR---~~LsGGapLS~dtQrF~nic~C~Pv~-qGYGLTEtca~~tv~e~ 448 (678)
T KOG1180|consen 388 LDALVFKKIRALLGG---------------NLR---YILSGGAPLSPDTQRFMNICFCCPVL-QGYGLTETCAAATVLEP 448 (678)
T ss_pred HHHHHHHHHHHHhCC---------------ceE---EEEeCCCCCCHHHHHHHHHhcccccc-ccccccchhcccEecCh
Confidence 355578888888665 577 445555 556666665555456998 9999999964432 333
Q ss_pred CCC-CCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCc------cccCCCCCCCeEEEEEeecccccceecCCeE
Q 010023 359 SLP-PEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEP------VPLSQVKLGQEYEIVLTSFTGLYRYRLGDVV 431 (520)
Q Consensus 359 ~~p-~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~------l~l~ele~G~~YelViTt~~GLyRYriGDvV 431 (520)
.+. -+.++-.+ ..+++-.+..+|.+=. .-++-+++++ +.+.=.+--++=.-..|...|---+++|||.
T Consensus 449 ~d~~~g~vG~pl--~c~eiKLvdw~EgGY~---~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIG 523 (678)
T KOG1180|consen 449 EDFSTGRVGAPL--PCCEIKLVDWEEGGYF---AKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIG 523 (678)
T ss_pred hhcccccccCCc--cceEEEEEEhhhcCcc---CCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccc
Confidence 321 11222211 2345555555442210 0000012211 1111111111111222335665568999999
Q ss_pred eee------hHHHH-------------HhhhhccCCChhhHhh--h--hcCCCCCcEEEEeccchHHHHHHHHHhCCCCC
Q 010023 432 EVA------VLNQC-------------CHEMDVSFVDPGYVVS--R--RTNSIGPLELCIVKRGAFRMILDYFVGNGAAL 488 (520)
Q Consensus 432 rv~------~l~~~-------------c~~ld~~l~n~~Y~~~--R--~~g~l~pl~v~iv~~g~F~~~~~~~~~~G~~~ 488 (520)
+++ ++++- ...++.+|.|..|-+- - ++..-.|+-+.+=.++....|-+ ..|.+.
T Consensus 524 e~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~---k~Gi~~ 600 (678)
T KOG1180|consen 524 EFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAE---KAGISG 600 (678)
T ss_pred eecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccceeEEEEcCCchHHHHHHH---HcCCCh
Confidence 999 11110 1123444423333221 1 22334555444444444444443 567655
Q ss_pred CCCCCCcccCCHHHHHHHhhccc
Q 010023 489 SQFKTPRCTSNQVLVRILNDWTI 511 (520)
Q Consensus 489 ~Q~K~Pr~~~~~~~~~~l~~~~~ 511 (520)
. -..-+..|.++.+.+....+
T Consensus 601 ~--~~e~lc~d~k~~~~v~k~L~ 621 (678)
T KOG1180|consen 601 S--TWEELCEDKKVVKAVLKELI 621 (678)
T ss_pred h--hHHHHhccHHHHHHHHHHHH
Confidence 4 34455667777766554443
No 110
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=90.69 E-value=7.1 Score=43.59 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcc--eeeecCCCCC-CCCCceeeeeCCceEEEEeeCCcc
Q 010023 310 WPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTES--WIGVNVDPSL-PPEDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 310 WP~L~~i~~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg--~igi~~~~~~-p~~~~~~~l~p~~~ffEFip~~~~ 384 (520)
.|.++.|. ++|+ ...-..++++.+|...+. .+||-||. .+++|.+... .++.++. +.| . +-+-..+
T Consensus 298 l~sl~~v~--~gga~~~~~~~~~~~~~l~~~~v~-q~YGmTE~~~~~~~~~~~~e~k~~svG~-~~~--g--~~~~v~~- 368 (537)
T KOG1176|consen 298 LSSLRSVL--SGGAPLSPATLEKVKERLPNVTVI-QGYGMTEAGGLITSNDWGPERKPGSVGR-LLP--G--VRVKVLD- 368 (537)
T ss_pred CCccEEEE--ecCCCCCHHHHHHHHHhCCCceEE-EeeccccccCceeecCCCccCcccccCc-ccc--c--eEEEeeC-
Confidence 45666333 4444 667778888889866666 99999998 5788887662 2343444 333 1 2222211
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEee---cccccc--------------eecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt---~~GLyR--------------YriGDvVrv~ 434 (520)
+.+. ++.+++..||.|-. ..|.|. +++||+--+.
T Consensus 369 -----------e~g~-----~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D 419 (537)
T KOG1176|consen 369 -----------ETGV-----SLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFD 419 (537)
T ss_pred -----------CCCC-----CCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEc
Confidence 1234 66778889999944 445442 7899996666
No 111
>PRK13390 acyl-CoA synthetase; Provisional
Probab=87.46 E-value=3.8 Score=44.30 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 311 P~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
++++ .+++|+ ...-.+.+++.++ .+++ ..||.||+.
T Consensus 270 ~~l~---~v~~~g~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~ 308 (501)
T PRK13390 270 SSLR---AVIHAAAPCPVDVKHAMIDWLG-PIVY-EYYSSTEAH 308 (501)
T ss_pred hhhh---eEEEcCCCCCHHHHHHHHHhcC-Ccee-eeecccccC
Confidence 4666 555555 3344456666664 5777 899999983
No 112
>PRK13391 acyl-CoA synthetase; Provisional
Probab=87.23 E-value=2.3 Score=46.18 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=23.9
Q ss_pred CCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 312 ~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
+++ .+.+|+ ...-.+.+++.+| .+++ .+||+||+.
T Consensus 276 ~l~---~~~~gg~~~~~~~~~~~~~~~g-~~v~-~~YG~tE~~ 313 (511)
T PRK13391 276 SLE---VAIHAAAPCPPQVKEQMIDWWG-PIIH-EYYAATEGL 313 (511)
T ss_pred cee---EEEEccCCCCHHHHHHHHHHcC-Ccee-eeecccccc
Confidence 666 445554 4455567777775 5666 999999984
No 113
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=87.16 E-value=1.8 Score=49.14 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=47.6
Q ss_pred HHHHHHHHhcc--CChHHHHhhcCccCCCCCCCcC---hHHhhhcCCCCCcccchHHHHHHhcCCCCCc-c--cccccce
Q 010023 37 ETLRRILEQNY--DVEYLKKRLGDTKIQDMDACEM---ETLYTSLVPLASHADLEPYIQRIADGDTASL-L--TQEPITK 108 (520)
Q Consensus 37 ~~L~~iL~~n~--~T~ygr~~~~~~~~~~~~~i~s---~edFr~~VPl~~Yed~~pyier~~~Ge~~~l-l--~~~pi~~ 108 (520)
+.+..||+... .++.+|... -|.+..+ -..=...|+|.+|+++..--+ ++.... . .++-+-.
T Consensus 190 ~k~~~ll~~~~~~~~~~LK~iI------~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~----~~~~~~~~~p~p~d~at 259 (691)
T KOG1256|consen 190 KKAEKLLEIKENDSLPSLKAII------QLDEPSDELKEKAENNGVEVYSWDEFEELGK----KNQRKPRVPPKPDDLAT 259 (691)
T ss_pred HHHHHHHhhcccccCccceeEE------EecCCchhhhhhhhcCCeEEEEHHHHHhhcc----cccCCCCCCCCccceEE
Confidence 34446676533 366655542 2333331 111223477888888766432 111111 1 2333445
Q ss_pred eeccccCCCCccceeecChhhHHH
Q 010023 109 LSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 109 f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
...||||| |.||=.=.|+..+-.
T Consensus 260 I~yTSGTT-G~PKGVMLTH~Niv~ 282 (691)
T KOG1256|consen 260 ICYTSGTT-GNPKGVMLTHRNIVS 282 (691)
T ss_pred EEEcCCCC-CCCceEEEeccceee
Confidence 67799999 899999999887654
No 114
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=87.10 E-value=2.7 Score=44.53 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHh-ccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHHHhcCCCCCccc--ccccce
Q 010023 32 GEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLT--QEPITK 108 (520)
Q Consensus 32 ~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier~~~Ge~~~ll~--~~pi~~ 108 (520)
.+...+.++++.+. ..+++.+|++.. ..+.+ ..+ .++. .+|..--.-++.. .|.+ .+.+..
T Consensus 30 ~~l~~~~~~~~~~~q~~~~~~Yr~~~~-~~~~~-~~v---~~~~-dIP~lPi~~FK~~----------~L~S~~~e~~~~ 93 (365)
T PF04443_consen 30 EELFLALALELFRYQYEHNPPYRKYCD-ALGFD-EDV---KDLE-DIPFLPIRFFKEH----------ELLSVPEEEVEK 93 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHH-HcCCC-ccc---ccHH-HCCcchHHHHhhc----------eeeecChhhhee
Confidence 34455566666664 889999999952 22333 334 4444 3777766666641 3332 334667
Q ss_pred eeccccCCCCccceeecChhhHH
Q 010023 109 LSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 109 f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
...||||| |.+-.|...+..+.
T Consensus 94 ~~tSSGTt-G~~S~i~~D~~t~~ 115 (365)
T PF04443_consen 94 VFTSSGTT-GQPSRIFRDRETAE 115 (365)
T ss_pred EEECCCCC-CCCcEEEECHHHHH
Confidence 88999999 76666777665444
No 115
>PRK07798 acyl-CoA synthetase; Validated
Probab=86.61 E-value=3.2 Score=44.93 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=26.0
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcc
Q 010023 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTES 350 (520)
Q Consensus 311 P~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg 350 (520)
++++ .+.+|+ ...-...+++.++++++. ..||+||.
T Consensus 296 ~~l~---~i~~gG~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~ 334 (533)
T PRK07798 296 SSLF---AIASGGALFSPSVKEALLELLPNVVLT-DSIGSSET 334 (533)
T ss_pred CceE---EEEECCCCCCHHHHHHHHHHcCCCeEE-eeeccccc
Confidence 4566 666665 444556677778788888 99999996
No 116
>PRK07868 acyl-CoA synthetase; Validated
Probab=84.88 E-value=3.3 Score=49.67 Aligned_cols=111 Identities=7% Similarity=0.013 Sum_probs=56.8
Q ss_pred CCCceEEEEEcCC-hHHHHHHHHhHhCCCCcccCccccCcceee-ecCCCCCCCCCceeeeeCCceEEEEeeCCccccCC
Q 010023 311 PNAKYVYSIMTGS-MQHYLKKLRHYAGDLPLVSADYGSTESWIG-VNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDC 388 (520)
Q Consensus 311 P~L~~i~~~~tG~-~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ig-i~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~ 388 (520)
+.++ .+.+|+ .....+++.+.+|+++++ ++||.||+.+. .+..... ++..+. .+|+..-++-...+.....
T Consensus 720 ~slr---~~~g~gl~~~l~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~-~~svG~-p~pg~~~v~i~~~d~~~g~- 792 (994)
T PRK07868 720 HPVR---LFIGSGMPTGLWERVVEAFAPAHVV-EFFATTDGQAVLANVSGAK-IGSKGR-PLPGAGRVELAAYDPEHDL- 792 (994)
T ss_pred CceE---EEecCCCCHHHHHHHHHHhCchhee-eeeecccccccccccCCCC-CcccCC-ccCCCCceeEEEecCcCCc-
Confidence 4566 334555 445567777888888888 89999998532 2221111 111222 3344322222211100000
Q ss_pred CCCCCCCCCCCccccCCCCCCCeEEEEEeec----------ccccc-----eecCCeEeee
Q 010023 389 NSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF----------TGLYR-----YRLGDVVEVA 434 (520)
Q Consensus 389 ~~~~~~~~~~~~l~l~ele~G~~YelViTt~----------~GLyR-----YriGDvVrv~ 434 (520)
..++ +++ -+.+++.|+..||.+... .|.++ |++||+.++.
T Consensus 793 -li~d--~~G---~~~~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~dgw~~TGDlg~~d 847 (994)
T PRK07868 793 -ILED--DRG---FVRRAEVNEVGVLLARARGPIDPTASVKRGVFAPADTWISTEYLFRRD 847 (994)
T ss_pred -eeec--CCc---eEEEcCCCCceEEEEecCCCCChhhhhHhcccccCCEEEeccceEEEc
Confidence 0000 111 012567899999998643 12232 8899999987
No 117
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=83.10 E-value=1.8 Score=46.14 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=34.5
Q ss_pred cChHHhhhcCCCCCcccchHHHHHHhcCCCCCcccccccceeeccccCCCCccceeecChhhHHH
Q 010023 68 EMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 68 ~s~edFr~~VPl~~Yed~~pyier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
++.|||--..+ .+.+|+|=+.++.. . -..+...||||| |+||-+..|...+..
T Consensus 70 ~~~~~~~~~~~-----~~~~~~~~~~~~~~-----~-~~~~i~~TSGTT-G~PKgV~~sh~~l~~ 122 (386)
T TIGR02372 70 TGTEDYLLVRR-----RIGEWVDLIAHHST-----P-TARFTFATSGST-GTPKPVTHSWAALLS 122 (386)
T ss_pred cchhhhhhhhc-----cHHHHHHHHHhcCC-----C-CceEEEECCCCC-CCCceeEeeHHHHHH
Confidence 34566653222 56666666665542 1 133566799999 899999999986643
No 118
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=73.14 E-value=3 Score=43.02 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.0
Q ss_pred cceeeccccCCCCccceeecChhhHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+...||||| |+||-+..|.+.+..
T Consensus 37 ~a~il~TSGTT-G~PKgv~~s~~~l~~ 62 (358)
T PRK07824 37 VALVVATSGTT-GTPKGAMLTAAALTA 62 (358)
T ss_pred eEEEEeCCCCC-CCCCEEEecHHHHHH
Confidence 45788899999 899999999887643
No 119
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=71.66 E-value=6.7 Score=42.33 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=21.4
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+...+...||||| |.||-+..|.+.+.
T Consensus 120 ~~~~~i~~TSGTT-G~PKgV~~t~~~l~ 146 (452)
T PRK07445 120 ETGWIMIPTGGSS-GQIRFAIHTWETLT 146 (452)
T ss_pred CCcEEEEeCCCCC-CCCcEEEechHHHH
Confidence 3444666799999 89999999988653
No 120
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=70.98 E-value=3.9 Score=44.17 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 311 P~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
++++ .+..|+ ...-.+++++ + ++++. ..||+||+.
T Consensus 230 ~~l~---~i~~gG~~l~~~~~~~~~~-~-~~~l~-~~YG~TE~~ 267 (452)
T PRK07445 230 AQFR---TILLGGAPAWPSLLEQARQ-L-QLRLA-PTYGMTETA 267 (452)
T ss_pred hcce---EEEECCccCCHHHHHHHHh-c-CCeEe-cCcchhhhc
Confidence 4667 555555 2333344444 3 67877 999999973
No 121
>PRK06178 acyl-CoA synthetase; Validated
Probab=69.02 E-value=22 Score=39.17 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.2
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+-+.+...||||| |.||-+..|...+-
T Consensus 209 ~~~a~i~~TSGTT-G~PK~v~~t~~~~~ 235 (567)
T PRK06178 209 DALAALNYTGGTT-GMPKGCEHTQRDMV 235 (567)
T ss_pred CCeEEEEeCCCCC-CCCceEEeccHHHH
Confidence 3455788899999 99999999998653
No 122
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=66.35 E-value=20 Score=39.16 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=22.1
Q ss_pred ccceeeccccCCCCccceeecChhhHHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
-+.+...||||| |+||-+..|...+..
T Consensus 153 d~a~i~~TSGTT-G~PKgV~~th~~~~~ 179 (525)
T PRK05851 153 GPAVLQGTAGST-GTPRTAILSPGAVLS 179 (525)
T ss_pred CeEEEEeCCCCC-CCCcEEEecHHHHHH
Confidence 355778899999 999999999886543
No 123
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=64.94 E-value=5.9 Score=42.35 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=22.7
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |+||-+..|.+.+..
T Consensus 135 ~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 162 (458)
T PRK09029 135 QRLATMTLTSGST-GLPKAAVHTAQAHLA 162 (458)
T ss_pred CCeEEEEECCCCC-CCCCEEEEeHHHHHH
Confidence 3345788899999 899999999986543
No 124
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=62.05 E-value=1.2e+02 Score=34.59 Aligned_cols=41 Identities=7% Similarity=-0.022 Sum_probs=29.7
Q ss_pred ccchHHHHHHHHHhCCCCCCCCCCCcccCCHHHHHHHhhcc
Q 010023 470 KRGAFRMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWT 510 (520)
Q Consensus 470 ~~g~F~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~ 510 (520)
|.-...+.|+..+++-..+.|++-.-.+.|++.++.+.+.+
T Consensus 584 PkTrSGKimRr~lrki~~g~~~~d~st~~dp~v~~~~~~~~ 624 (626)
T KOG1175|consen 584 PKTRSGKIMRRALRKIASGKAVGDTSTLADPSVIDHLRSIL 624 (626)
T ss_pred CccccchhHHHHHHHHhccCccccccccCChHHHHHHHHhh
Confidence 44456678887776644444888888899999998887653
No 125
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=62.00 E-value=7.1 Score=42.74 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCCCCCeEEEEEeecc---ccc---------ceecCCeEeee
Q 010023 405 QVKLGQEYEIVLTSFT---GLY---------RYRLGDVVEVA 434 (520)
Q Consensus 405 ele~G~~YelViTt~~---GLy---------RYriGDvVrv~ 434 (520)
+|..|+..||+|+..+ |.| -|++||+++..
T Consensus 366 ~~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGDl~~~~ 407 (525)
T PRK05851 366 GVAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGDLGYLV 407 (525)
T ss_pred cCCCCCeEEEEEecCchhhccccCCccCCCCceeccceEEEE
Confidence 4778999999997632 333 38999998876
No 126
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=56.24 E-value=30 Score=38.70 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.3
Q ss_pred cccceeeccccCCCCccceeecChhhHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+-+.+...||||| |+||-+..|++.+.
T Consensus 193 ~d~a~i~yTSGTT-G~PKgV~~sh~~l~ 219 (612)
T PRK12476 193 DDVSHLQYTSGST-RPPVGVEITHRAVG 219 (612)
T ss_pred CceEEEEeCCCCC-CCCceEEeeHHHHH
Confidence 3455788899999 89999999998663
No 127
>PRK08162 acyl-CoA synthetase; Validated
Probab=55.85 E-value=95 Score=33.84 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=19.4
Q ss_pred ceeeccccCCCCccceeecChhhH
Q 010023 107 TKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 107 ~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
.....||||| |.||-+.+|...+
T Consensus 185 ~~i~~TSGTT-G~PKgv~~t~~~~ 207 (545)
T PRK08162 185 IALNYTSGTT-GNPKGVVYHHRGA 207 (545)
T ss_pred EEEEeCCCCC-CCCcEEEEecHHH
Confidence 3677899999 8999999998743
No 128
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=54.27 E-value=13 Score=41.63 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEcCC--hHHHHHHHHhHhC--CCC---cccCccccCcce
Q 010023 318 SIMTGS--MQHYLKKLRHYAG--DLP---LVSADYGSTESW 351 (520)
Q Consensus 318 ~~~tG~--~~~y~~~l~~~~g--~~p---i~~~~Y~aSEg~ 351 (520)
++.+|. ...-.+.+++.++ ++| +. .+||.||+.
T Consensus 322 ~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~-~~YG~TE~~ 361 (612)
T PRK12476 322 LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFK-PSYGIAEAT 361 (612)
T ss_pred EEecccCCCHHHHHHHHHHHHhcCCCccccc-cccchhhhh
Confidence 444444 4444556666663 334 55 999999984
No 129
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=50.56 E-value=12 Score=40.82 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=47.1
Q ss_pred HHHHHHHHHh--ccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCC---Ccccc-----hHHHHHHhcCCCCCcccccc
Q 010023 36 RETLRRILEQ--NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLA---SHADL-----EPYIQRIADGDTASLLTQEP 105 (520)
Q Consensus 36 ~~~L~~iL~~--n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~---~Yed~-----~pyier~~~Ge~~~ll~~~p 105 (520)
-++|++|.-. +++..=.|.+ .|...+++--+-.-+|+- .|+|+ ++.++....=+ .-+.+.++
T Consensus 165 ~~~l~~icPEv~~~~~G~lkS~-------~lp~lthvi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~-k~~~pdd~ 236 (596)
T KOG1177|consen 165 YETLLEICPEVMRGDPGQLKSE-------LLPELTHVILADEDHPLPGAFLLSEVLKAASKEERAKLADMS-KWLSPDDA 236 (596)
T ss_pred HHHHHHhhHHhhcCCCcccccc-------ccccceEEEecCCCCcCCCceehHHHHHhcchHHHHHHHhhh-hhcCCCCc
Confidence 6788888864 6666644444 454444422121223332 23333 12333333222 23334555
Q ss_pred cceeeccccCCCCccceeecChhhH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+ -.+.||||| |.||-+-.|..-+
T Consensus 237 ~-niQFTSGTT-G~PKgatLsH~~~ 259 (596)
T KOG1177|consen 237 V-NIQFTSGTT-GAPKGATLSHYNF 259 (596)
T ss_pred e-EEEeccCCC-CCCcceeeehhhh
Confidence 5 789999999 8999999887644
No 130
>PRK09192 acyl-CoA synthetase; Validated
Probab=50.54 E-value=13 Score=41.24 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.0
Q ss_pred ccceeeccccCCCCccceeecChhhHHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
-+.+...||||| |.||-+..|...+..
T Consensus 177 ~~a~i~~TSGTT-G~PKgv~~sh~~~~~ 203 (579)
T PRK09192 177 DIAYLQYSSGST-RFPRGVIITHRALMA 203 (579)
T ss_pred CeEEEEecCCCC-CCCceEEeeHHHHHH
Confidence 344777899999 999999999986643
No 131
>PLN03052 acetate--CoA ligase; Provisional
Probab=47.99 E-value=14 Score=42.64 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=20.8
Q ss_pred ccceeeccccCCCCccceeecChhhH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
-+.+...||||| |+||-|..|...+
T Consensus 357 ~~a~IlyTSGTT-G~PKgVv~sh~~~ 381 (728)
T PLN03052 357 AFTNILFSSGTT-GEPKAIPWTQLTP 381 (728)
T ss_pred CcEEEEecCCCC-CCCceEEECchHH
Confidence 344778899999 9999999998754
No 132
>PRK06178 acyl-CoA synthetase; Validated
Probab=46.97 E-value=16 Score=40.23 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=18.8
Q ss_pred hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 324 MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 324 ~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
.....+.+++.+|. +++...||.||..
T Consensus 340 ~~~~~~~~~~~~g~-~~~~~~YG~tE~~ 366 (567)
T PRK06178 340 NPDYRQRWRALTGS-VLAEAAWGMTETH 366 (567)
T ss_pred CHHHHHHHHHHhCC-ccccccccccccc
Confidence 45566677777765 5554689999973
No 133
>PRK07798 acyl-CoA synthetase; Validated
Probab=45.45 E-value=11 Score=40.64 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=19.9
Q ss_pred eeeccccCCCCccceeecChhhHH
Q 010023 108 KLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
+...||||| |.||-+.+|...+.
T Consensus 167 ~i~~TSGTT-G~PK~v~~s~~~~~ 189 (533)
T PRK07798 167 YLLYTGGTT-GMPKGVMWRQEDIF 189 (533)
T ss_pred EEEECCCCC-CCCcEEEEecHHHH
Confidence 667799999 89999999998653
No 134
>PLN02479 acetate-CoA ligase
Probab=44.90 E-value=13 Score=41.20 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.3
Q ss_pred eeeccccCCCCccceeecChhhH
Q 010023 108 KLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
++..||||| |.||-+.+|.+.+
T Consensus 199 ~i~yTSGTT-G~PKgV~~sh~~~ 220 (567)
T PLN02479 199 ALGYTSGTT-ASPKGVVLHHRGA 220 (567)
T ss_pred EEEECCCCC-CCCcEEEeccHHH
Confidence 578899999 8999999998754
No 135
>PRK09192 acyl-CoA synthetase; Validated
Probab=44.17 E-value=84 Score=34.78 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=21.3
Q ss_pred CCCCCCeEEEEEeec---cccc-------------ceecCCeEeee
Q 010023 405 QVKLGQEYEIVLTSF---TGLY-------------RYRLGDVVEVA 434 (520)
Q Consensus 405 ele~G~~YelViTt~---~GLy-------------RYriGDvVrv~ 434 (520)
++..|+..||+|+.. .|.| .|++||++.+.
T Consensus 405 ~~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~~~ 450 (579)
T PRK09192 405 PLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL 450 (579)
T ss_pred CCCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceeeEE
Confidence 567788999999763 2333 48899988754
No 136
>PLN03052 acetate--CoA ligase; Provisional
Probab=44.09 E-value=75 Score=36.79 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCCCceEEEEEcCCh--H-HHHHHHHhHhCCCCcccCccccCcce
Q 010023 310 WPNAKYVYSIMTGSM--Q-HYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 310 WP~L~~i~~~~tG~~--~-~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
++.|+ .+.+|+. . .-...+.+.++..|+. ..||.||..
T Consensus 470 lssLr---~i~s~Ge~l~~~~~~~~~~~~~~~~i~-~~yG~TE~~ 510 (728)
T PLN03052 470 WSSIR---CFGSTGEASSVDDYLWLMSRAGYKPII-EYCGGTELG 510 (728)
T ss_pred hhhee---EEEecCCCCCHHHHHHHHHhcCCCCeE-eeccChhhC
Confidence 35777 5555442 1 1122344445556776 999999974
No 137
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=38.76 E-value=63 Score=34.37 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=21.8
Q ss_pred CCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCccee
Q 010023 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI 352 (520)
Q Consensus 312 ~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~i 352 (520)
.++ .+.+|+ .....+.+++ + +++++ .+||+||+..
T Consensus 241 ~l~---~i~~gG~~~~~~~~~~~~~-~-g~~~~-~~YG~tE~~~ 278 (458)
T PRK09029 241 SLK---AVLLGGAAIPVELTEQAEQ-Q-GIRCW-CGYGLTEMAS 278 (458)
T ss_pred cce---EEEECCCCCCHHHHHHHHH-c-CCcEe-ccccccccCc
Confidence 456 455555 3333444544 3 67888 9999999853
No 138
>PRK08162 acyl-CoA synthetase; Validated
Probab=36.40 E-value=19 Score=39.32 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEcCC--hHHHHHHHHhHhCCCCcccCccccCcc
Q 010023 318 SIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTES 350 (520)
Q Consensus 318 ~~~tG~--~~~y~~~l~~~~g~~pi~~~~Y~aSEg 350 (520)
++.+|+ .....+.+++ + +++++ ..||+||+
T Consensus 301 ~~~~g~~~~~~~~~~~~~-~-~~~~~-~~YG~tE~ 332 (545)
T PRK08162 301 AMVAGAAPPAAVIAKMEE-I-GFDLT-HVYGLTET 332 (545)
T ss_pred EEECCCCCCHHHHHHHHH-h-CCcee-eccccccc
Confidence 444554 3444455554 3 57888 99999996
No 139
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=29.68 E-value=66 Score=25.71 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=25.0
Q ss_pred ccccCCCCCCCeEEEEEeec-------------cccc-------ceecCCeEeee
Q 010023 400 PVPLSQVKLGQEYEIVLTSF-------------TGLY-------RYRLGDVVEVA 434 (520)
Q Consensus 400 ~l~l~ele~G~~YelViTt~-------------~GLy-------RYriGDvVrv~ 434 (520)
.+.+.+++.|+.|+-.|+.. .||. +|++||.++|.
T Consensus 8 ~~~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~~~~~iGd~v~v~ 62 (77)
T cd04473 8 ACTMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLLRDYEVGDEVIVQ 62 (77)
T ss_pred ccchhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhccCcCCCCCEEEEE
Confidence 45566788899998887742 2333 47899998887
No 140
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=26.88 E-value=38 Score=28.35 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=16.8
Q ss_pred EEEEEeecccccceecCCeEeee
Q 010023 412 YEIVLTSFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 412 YelViTt~~GLyRYriGDvVrv~ 434 (520)
+-.......|+||+|+|| .|+.
T Consensus 43 ~k~~~~~~~~~~R~RiG~-YRlI 64 (90)
T COG2026 43 GKKLRKGLSGKYRLRIGD-YRLI 64 (90)
T ss_pred ceecccCCCCeEEEEecC-EEEE
Confidence 455566788999999999 5555
No 141
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=26.38 E-value=39 Score=27.87 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=15.3
Q ss_pred CCCCeEEEEEeeccc--ccceecC
Q 010023 407 KLGQEYEIVLTSFTG--LYRYRLG 428 (520)
Q Consensus 407 e~G~~YelViTt~~G--LyRYriG 428 (520)
--|++|+++|.+..| +|||-=|
T Consensus 21 ~sgq~~D~~v~d~~g~~vwrwS~~ 44 (82)
T PF12690_consen 21 PSGQRYDFVVKDKEGKEVWRWSDG 44 (82)
T ss_dssp SSS--EEEEEE-TT--EEEETTTT
T ss_pred CCCCEEEEEEECCCCCEEEEecCC
Confidence 579999999999999 8888755
No 142
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=26.24 E-value=53 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=26.2
Q ss_pred ccCCCCCCCeEEEEEeecccccceecCCeEeee
Q 010023 402 PLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 402 ~l~ele~G~~YelViTt~~GLyRYriGDvVrv~ 434 (520)
.|.+|+.|+ +|.|++..|-|+|++=++..|.
T Consensus 62 ~L~~l~~Gd--~i~v~~~~~~~~Y~V~~~~~v~ 92 (137)
T cd05830 62 DLDKLRPGD--KIVVETADGWYTYVVRSSEIVL 92 (137)
T ss_pred cHhhCCCCC--EEEEEECCeEEEEEEeEEEEEC
Confidence 456899998 8888999999999998886665
No 143
>PRK13390 acyl-CoA synthetase; Provisional
Probab=25.64 E-value=35 Score=36.81 Aligned_cols=19 Identities=37% Similarity=0.302 Sum_probs=15.7
Q ss_pred ceeeccccCCCCccceeecC
Q 010023 107 TKLSLSSGTTEGRQKYVPFT 126 (520)
Q Consensus 107 ~~f~~TSGTT~G~~K~IP~T 126 (520)
.+...||||| |.||-+..+
T Consensus 151 a~i~~TSGTT-G~PKgV~~~ 169 (501)
T PRK13390 151 AVMLYSSGTT-GFPKGIQPD 169 (501)
T ss_pred EEEEeCCCCC-CCCCEEEee
Confidence 4667799999 999999853
No 144
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=24.07 E-value=52 Score=33.68 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=17.6
Q ss_pred ccceecCCeEeeehHHHHHhhhhccC
Q 010023 422 LYRYRLGDVVEVAVLNQCCHEMDVSF 447 (520)
Q Consensus 422 LyRYriGDvVrv~~l~~~c~~ld~~l 447 (520)
||||+-|+-|+++ |.|-..+|
T Consensus 242 ly~y~~~~~v~i~-----c~chg~~~ 262 (284)
T PF07897_consen 242 LYKYGKGEEVRIV-----CVCHGSFL 262 (284)
T ss_pred EEEecCCCeEEEE-----EEecCCCC
Confidence 9999999999999 77766555
No 145
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=23.81 E-value=72 Score=28.23 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=25.5
Q ss_pred ccCCCCCCCeEEEEEeecccccceecCCeEeee
Q 010023 402 PLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 402 ~l~ele~G~~YelViTt~~GLyRYriGDvVrv~ 434 (520)
.|++|+.|+ ++.|++.++-|+|++-++-.|.
T Consensus 58 ~L~~l~~Gd--~i~v~~~~~~~~Y~V~~~~~v~ 88 (127)
T cd05828 58 FLGELEPGD--IITLQTLGGTYTYRVTSTRIVD 88 (127)
T ss_pred ChhcCCCCC--EEEEEECCEEEEEEEeeEEEEC
Confidence 345889998 4777888999999999987776
No 146
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=23.08 E-value=72 Score=29.00 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=23.9
Q ss_pred ccCCCCCCCeEEEEEeec-ccccceecCCeEeee
Q 010023 402 PLSQVKLGQEYEIVLTSF-TGLYRYRLGDVVEVA 434 (520)
Q Consensus 402 ~l~ele~G~~YelViTt~-~GLyRYriGDvVrv~ 434 (520)
.|++|++|. +|.|++. ++-|+|++-++..|.
T Consensus 69 ~L~~l~~GD--~I~v~~~~g~~~~Y~V~~~~~v~ 100 (144)
T cd05829 69 RLGDLRKGD--KVEVTRADGQTATFRVDRVEVYP 100 (144)
T ss_pred chhcCCCCC--EEEEEECCCCEEEEEEeEEEEEC
Confidence 456899998 5677884 458999999886555
No 147
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=22.89 E-value=63 Score=28.56 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=26.2
Q ss_pred cccCCCCCCCeEEEEEeecccccceecCCeEeee
Q 010023 401 VPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 401 l~l~ele~G~~YelViTt~~GLyRYriGDvVrv~ 434 (520)
-.|++|+.|+. +.|++..+-|+|++=++-.|.
T Consensus 60 ~~L~~l~~Gd~--v~v~~~~~~~~Y~V~~~~~v~ 91 (126)
T cd06166 60 NRLDEVEKGDE--IKVTTKNGTYKYKITSIFVVE 91 (126)
T ss_pred CChHHCCCCCE--EEEEECCEEEEEEEEEEEEEC
Confidence 45779999974 777888999999998877666
No 148
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=22.16 E-value=80 Score=31.20 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=30.2
Q ss_pred cccccccceeeccccCCCCccceeecC-hhh-HHHHHHHHHHHHHHHHhcCC
Q 010023 100 LLTQEPITKLSLSSGTTEGRQKYVPFT-KHS-SQTTLQIFRLAAAYRSRVYP 149 (520)
Q Consensus 100 ll~~~pi~~f~~TSGTT~G~~K~IP~T-~~~-l~~~~~~~~~~~~~~~~~~p 149 (520)
+|..-.+..|.+|||++ |=.-++|.. ... .++...+-..++..+.+..|
T Consensus 121 ~L~~lgL~~f~KTSG~k-GlHV~vPl~~~~~~~~~~r~fa~~iA~~l~~~~P 171 (223)
T cd04866 121 ILDALGLTSFVKTSGNK-GLQVYIPLPDNKFTYDETRLFTEFIAEYLCQQFP 171 (223)
T ss_pred HHHHcCCccceEccCCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 33344577999999999 899999999 442 23322222223344555555
No 149
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=21.06 E-value=78 Score=31.75 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred cccccccceeeccccCCCCccceeecChhhH-HHHHHHHHHHHHHHHhcCC
Q 010023 100 LLTQEPITKLSLSSGTTEGRQKYVPFTKHSS-QTTLQIFRLAAAYRSRVYP 149 (520)
Q Consensus 100 ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l-~~~~~~~~~~~~~~~~~~p 149 (520)
+|..-.+..|.+|||++ |=+-++|.....- ++...+-..++..+.+..|
T Consensus 142 ~L~~lgL~~f~KTSG~k-GlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~P 191 (245)
T TIGR02778 142 LLDELGLESFVKTSGGK-GLHVYVPLRPTLSWDEVKDFAKALAQALAQQMP 191 (245)
T ss_pred HHHHcCCccceEccCCC-eEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 44444577999999999 8999999998643 3322222223344555566
No 150
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.71 E-value=1.1e+02 Score=22.93 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=22.9
Q ss_pred CCCCCeEEEEEeecccccc------eecCCeEeee
Q 010023 406 VKLGQEYEIVLTSFTGLYR------YRLGDVVEVA 434 (520)
Q Consensus 406 le~G~~YelViTt~~GLyR------YriGDvVrv~ 434 (520)
+|.-++|.+|+|.-+-|.+ +.+||.|.+.
T Consensus 1 mei~~~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~ 35 (56)
T PF12791_consen 1 MEIKKKYAIVLTPDGEFIKIKRKPGMEVGQEIEFD 35 (56)
T ss_pred CcCcCCEEEEEcCCCcEEEEeCCCCCcccCEEEEe
Confidence 3556789999998887663 7889999888
No 151
>COG3764 SrtA Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]
Probab=20.58 E-value=70 Score=31.33 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=29.0
Q ss_pred ccccCCCCCCCeEEEEEeecccccceecCCeEeee
Q 010023 400 PVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 400 ~l~l~ele~G~~YelViTt~~GLyRYriGDvVrv~ 434 (520)
-..|.+|+.|. .++|++.++-|+|++-|+..|.
T Consensus 129 F~~L~~lk~GD--~iyv~~~~~~~~Y~v~~~~~V~ 161 (210)
T COG3764 129 FRPLGKLKVGD--KIYVTTKNETYVYKVTDISIVD 161 (210)
T ss_pred ccchhhhcCCC--EEEEEeCCcEEEEEEEEEEEeC
Confidence 34577999998 6899999999999999998887
Done!