Query 010023
Match_columns 520
No_of_seqs 145 out of 600
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 4E-119 1E-123 980.3 43.3 492 9-519 8-581 (581)
2 4b2g_A GH3-1 auxin conjugating 100.0 5E-117 2E-121 967.3 36.5 491 12-519 14-589 (609)
3 4eql_A 4-substituted benzoates 100.0 1E-115 4E-120 955.3 37.0 480 12-516 9-580 (581)
4 2y27_A Phenylacetate-coenzyme 99.6 6E-14 2E-18 148.1 18.0 283 29-434 21-315 (437)
5 2y4o_A Phenylacetate-coenzyme 99.6 1.2E-13 4.2E-18 146.0 20.1 283 29-434 23-317 (443)
6 3qov_A Phenylacetate-coenzyme 99.5 1.4E-13 4.6E-18 145.3 17.1 282 29-434 17-310 (436)
7 3hgu_A EHPF; phenazine, antibi 99.3 1.7E-11 5.7E-16 126.4 16.5 91 34-132 22-118 (369)
8 3ivr_A Putative long-chain-fat 98.2 1.1E-05 3.7E-10 86.4 14.0 97 311-434 272-386 (509)
9 3etc_A AMP-binding protein; ad 98.1 1.9E-05 6.5E-10 86.4 14.3 98 310-434 340-463 (580)
10 3e7w_A D-alanine--poly(phospho 98.1 3.6E-05 1.2E-09 82.4 15.4 102 307-434 256-387 (511)
11 2d1s_A Luciferase, luciferin 4 98.1 1.5E-05 5.2E-10 86.3 11.4 100 310-434 308-429 (548)
12 3l8c_A D-alanine--poly(phospho 98.0 1.7E-05 5.9E-10 85.0 11.0 100 309-434 262-391 (521)
13 1t5h_X 4-chlorobenzoyl COA lig 98.0 7E-05 2.4E-09 80.0 15.7 100 310-434 271-390 (504)
14 3fce_A D-alanine--poly(phospho 98.0 1.7E-05 5.7E-10 85.0 9.4 40 308-351 258-300 (512)
15 3rix_A Luciferase, luciferin 4 98.0 0.00024 8.1E-09 76.8 18.5 100 310-434 306-427 (550)
16 4fuq_A Malonyl COA synthetase; 97.9 0.00016 5.4E-09 77.3 16.4 100 309-434 266-387 (503)
17 3g7s_A Long-chain-fatty-acid-- 97.8 0.00014 4.9E-09 78.5 13.9 28 104-132 180-207 (549)
18 1mdb_A 2,3-dihydroxybenzoate-A 97.8 4.9E-05 1.7E-09 82.1 9.6 99 310-434 297-418 (539)
19 3o83_A Peptide arylation enzym 97.8 6.1E-05 2.1E-09 81.4 10.2 98 311-434 307-427 (544)
20 3ni2_A 4-coumarate:COA ligase; 97.7 9.7E-05 3.3E-09 79.6 10.3 101 309-434 295-422 (536)
21 3rg2_A Enterobactin synthase c 97.7 0.0001 3.6E-09 80.9 10.4 100 309-434 300-422 (617)
22 2v7b_A Benzoate-coenzyme A lig 97.7 8.7E-05 3E-09 79.7 8.9 96 312-434 301-417 (529)
23 3kxw_A Saframycin MX1 syntheta 97.7 0.00037 1.3E-08 75.6 14.0 28 104-132 167-194 (590)
24 3nyq_A Malonyl-COA ligase; A/B 97.6 0.00032 1.1E-08 75.1 12.9 28 105-133 156-183 (505)
25 3r44_A Fatty acyl COA syntheta 97.6 0.00093 3.2E-08 71.6 16.4 29 103-132 169-197 (517)
26 3c5e_A Acyl-coenzyme A synthet 97.6 0.00047 1.6E-08 75.0 13.9 98 310-434 321-444 (570)
27 3ite_A SIDN siderophore synthe 97.6 0.00025 8.5E-09 76.7 11.6 27 106-133 177-203 (562)
28 4gr5_A Non-ribosomal peptide s 97.6 0.00012 4.1E-09 79.5 8.5 38 310-351 325-365 (570)
29 3gqw_A Fatty acid AMP ligase; 97.6 0.00019 6.7E-09 77.4 10.1 28 104-132 176-203 (576)
30 3tsy_A Fusion protein 4-coumar 97.4 0.00036 1.2E-08 80.8 10.5 100 310-434 343-469 (979)
31 1pg4_A Acetyl-COA synthetase; 97.4 0.00046 1.6E-08 76.4 10.5 26 104-130 256-281 (652)
32 1ry2_A Acetyl-coenzyme A synth 97.3 0.00092 3.1E-08 74.2 11.1 25 105-130 263-287 (663)
33 3ipl_A 2-succinylbenzoate--COA 97.3 0.0017 5.8E-08 69.0 12.7 29 103-132 162-190 (501)
34 4dg8_A PA1221; ANL superfamily 97.3 0.0022 7.6E-08 70.6 13.8 27 103-130 163-189 (620)
35 4gs5_A Acyl-COA synthetase (AM 97.2 0.0003 1E-08 72.1 5.4 25 107-132 40-64 (358)
36 1amu_A GRSA, gramicidin synthe 97.2 0.0011 3.8E-08 71.9 10.1 26 105-131 183-208 (563)
37 3t5a_A Long-chain-fatty-acid-- 96.9 0.0034 1.1E-07 66.0 10.8 27 105-132 184-210 (480)
38 1v25_A Long-chain-fatty-acid-C 96.9 0.0037 1.3E-07 67.3 10.9 26 104-130 176-201 (541)
39 2vsq_A Surfactin synthetase su 96.4 0.0084 2.9E-07 71.6 10.6 28 103-131 606-633 (1304)
40 2m0n_A Putative uncharacterize 26.2 72 0.0025 26.9 4.3 51 246-296 42-97 (112)
41 3ol3_A Putative uncharacterize 22.2 59 0.002 27.2 3.1 51 246-296 45-97 (107)
42 3oei_C RELK (toxin RV3358); to 21.9 28 0.00097 28.4 1.1 22 413-434 58-79 (96)
43 2ln7_A LPXTG-SITE transpeptida 21.5 31 0.0011 30.2 1.3 31 402-434 72-102 (147)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=4e-119 Score=980.30 Aligned_cols=492 Identities=48% Similarity=0.884 Sum_probs=449.2
Q ss_pred CCCcCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChHHHHhhcCccCCCCCCC-cChH-HhhhcCCCCCcccch
Q 010023 9 GNGYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDAC-EMET-LYTSLVPLASHADLE 86 (520)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~~~~~i-~s~e-dFr~~VPl~~Yed~~ 86 (520)
..++..+.+++.++.|++.++||.++|+++|++||++|++|+|||+| ||++| ++++ +||++|||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-------gf~~i~~~~e~dF~~~VPi~~Yedl~ 80 (581)
T 4epl_A 8 LEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNC-------GLNGNATDPEEAFKSMVPLVTDVELE 80 (581)
T ss_dssp -----CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTT-------TCC----CHHHHHHHHSCCBCHHHHH
T ss_pred hhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhc-------CCCcccCCHHHHHHHhCCCccHHHHH
Confidence 35678888999999999999999999999999999999999999999 99999 9999 999999999999999
Q ss_pred HHHHHHhcCCCCCcccccccceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeecCccc
Q 010023 87 PYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQF 166 (520)
Q Consensus 87 pyier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~ 166 (520)
||||||++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|..++++..++...||.|+|++++++.
T Consensus 81 pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~~p~l~~~Gk~L~l~~~s~~~ 160 (581)
T 4epl_A 81 PYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQY 160 (581)
T ss_dssp HHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCCCTTCEEEEECCCCCCE
T ss_pred HHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhhCCccccCCcEEEEeecCCcc
Confidence 99999999998899999999999999999999999999999999998778888878887633333259999988899999
Q ss_pred cccCCceEecCccccccchhHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHHHH
Q 010023 167 KTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAF 246 (520)
Q Consensus 167 ~t~~Gip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~~l 246 (520)
+|++|+|+|++|++++++.+|+..|.++...|++|.+++.++|..+++||||||||+++++|.+|+++||++|+++++.|
T Consensus 161 ~t~~Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l 240 (581)
T 4epl_A 161 ISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTF 240 (581)
T ss_dssp ECTTSCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHH
T ss_pred cCCCCceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHH
Q 010023 247 EECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQH 326 (520)
Q Consensus 247 ~~~w~~l~~dI~~g~~~~~~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~~~~ 326 (520)
+++|+++|+||++|+++ ++++++++|++++++|+|+|++|++|+++|++.+ +|.|++++|||||++|.||+||+|++
T Consensus 241 ~~~We~l~~dI~~gtl~-~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~--~~~g~i~~lWPnl~~i~~~~~G~~~~ 317 (581)
T 4epl_A 241 EQVWEEIVTDIKDGVLS-NRITVPSVRTAMSKLLTPNPELAETIRTKCMSLS--NWYGLIPALFPNAKYVYGIMTGSMEP 317 (581)
T ss_dssp HHHHHHHHHHHHHTCCC-TTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSS--TTTTHHHHHCTTCCCEEEECSGGGGG
T ss_pred HHHHHHHHHHHHhcCCC-cCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--ccccCHHHhCCCCceEEEEeCCChHH
Confidence 99999999999999999 8899999999999999999999999999999811 39999999999999999999999999
Q ss_pred HHHHHHhHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCC
Q 010023 327 YLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQV 406 (520)
Q Consensus 327 y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~el 406 (520)
|+++|++|+|++|+++++|+||||+||||++|.+|++.++|+|+|+.+||||||+++.++ +++++++++||
T Consensus 318 Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~---------~~~~~v~l~ev 388 (581)
T 4epl_A 318 YVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE---------GEEKPVGLTQV 388 (581)
T ss_dssp GHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC----------------CCCEEGGGC
T ss_pred HHHHHHHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC---------CCCceeeHHHc
Confidence 999999999999999999999999999999999998888999999999999999987654 46899999999
Q ss_pred CCCCeEEEEEeecccccceecCCeEeee----------------------------------------------------
Q 010023 407 KLGQEYEIVLTSFTGLYRYRLGDVVEVA---------------------------------------------------- 434 (520)
Q Consensus 407 e~G~~YelViTt~~GLyRYriGDvVrv~---------------------------------------------------- 434 (520)
|+|++|||||||.+||||||+||||+|+
T Consensus 389 e~G~~YelviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~ef 468 (581)
T 4epl_A 389 KIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDF 468 (581)
T ss_dssp CTTCEEEEEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCeEEEEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEE
Confidence 9999999999999999999999999999
Q ss_pred --------------------------hHHHHHhhhhccCCChhhHhhhhcCCCCCcEEEEeccchHHHHHHHHHhCCCCC
Q 010023 435 --------------------------VLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAAL 488 (520)
Q Consensus 435 --------------------------~l~~~c~~ld~~l~n~~Y~~~R~~g~l~pl~v~iv~~g~F~~~~~~~~~~G~~~ 488 (520)
.+++||.+||++|.|++|+.+|..|+|+||+|++|++|+|++|+++++++|+++
T Consensus 469 t~~~d~~~~p~hyv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~ 548 (581)
T 4epl_A 469 SSYIDVSTDPGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSA 548 (581)
T ss_dssp EEEEECSSSSCEEEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC---
T ss_pred EEecCCCCCCCcEEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCC
Confidence 366778888888779999999999999999999999999999999999999999
Q ss_pred CCCCCCccc--CCHHHHHHHhhccccccccccC
Q 010023 489 SQFKTPRCT--SNQVLVRILNDWTIKRFHSTAY 519 (520)
Q Consensus 489 ~Q~K~Pr~~--~~~~~~~~l~~~~~~~~~~~~~ 519 (520)
+|+|+|||+ ++++++++|+++|+++|+|+++
T Consensus 549 ~Q~K~PR~~~~~~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 549 GQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp ---CCCSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred CCcCCCeeecCCCHHHHHHHHhcccccccCCCC
Confidence 999999999 9999999999999999999975
No 2
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=4.9e-117 Score=967.27 Aligned_cols=491 Identities=33% Similarity=0.656 Sum_probs=443.7
Q ss_pred cCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHH
Q 010023 12 YGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQR 91 (520)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier 91 (520)
+..+.+++.++.|++.++||.++|+++|++||++|++|+|||+| ||++|++++||+++|||++|||++|||||
T Consensus 14 ~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~-------gf~~i~~~~dF~~~VPv~~Yedl~p~ieR 86 (609)
T 4b2g_A 14 AASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRF-------KLEGSTVRETFKSKIPVIKYEDLQPEIQR 86 (609)
T ss_dssp --CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTT-------CCTTCCSHHHHHHHSCCBCHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhc-------CCCCCCCHHHHHHhCCCccHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhcCCCCCcccccccceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEeecCccccccC
Q 010023 92 IADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTKG 170 (520)
Q Consensus 92 ~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~~ 170 (520)
|++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++++|..++++++| ++ .||.|+|.+++.+.+|++
T Consensus 87 i~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~-~Gk~l~l~~~~~~~~t~~ 165 (609)
T 4b2g_A 87 IANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLD-KGKGLYFLFVKSETRTPG 165 (609)
T ss_dssp HHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGG-GSEEEECCCCCCCEECTT
T ss_pred HhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCccc-CCCeEEEcccCCcccCCC
Confidence 9999977999999999999999999999999999999999988889999999999899 66 799999888888999999
Q ss_pred CceEecCccccccchhHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHHHHHHHH
Q 010023 171 GLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECW 250 (520)
Q Consensus 171 Gip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~~l~~~w 250 (520)
|+|+|++|++++++.+|+.+|......|++|.+++.++|..+++||||||||+++++|+.|+++|+++++++++.|+++|
T Consensus 166 Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~W 245 (609)
T 4b2g_A 166 GLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNW 245 (609)
T ss_dssp SCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999998866677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHHH
Q 010023 251 QDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKK 330 (520)
Q Consensus 251 ~~l~~dI~~g~~~~~~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~~~~y~~~ 330 (520)
+++|+||++|+++ ++++++.+|.++.++++|+|++|++|+++|++ . +|.|++++|||||++|.||+||+|++|+++
T Consensus 246 eel~~dI~~gtl~-~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~-~--~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~ 321 (609)
T 4b2g_A 246 HQLTHDIRTGTLS-PKITDPSVRNCVAGVLKPDPELADLVAGECSK-D--NWEGIITRIWPNTKYLDVIVTGAMAQYIPT 321 (609)
T ss_dssp HHHHHHHHHTCCC-TTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTS-S--CCTTTHHHHSTTCCEEEEECSGGGGGGHHH
T ss_pred HHHHHHHHhccCC-cCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCC-C--ccccCHHHhCCCCcEEEEEccCChHHHHHH
Confidence 9999999999999 89999999999999999999999999999998 4 699999999999999999999999999999
Q ss_pred HHhHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCCC
Q 010023 331 LRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQ 410 (520)
Q Consensus 331 l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~ 410 (520)
|++|+|++|+++++|+||||+||+|++|.||++..+|+|+|+.+||||||+++.+.+ .+..+++++|+++|||+|+
T Consensus 322 l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~----~~~~~~~~~v~l~eVe~G~ 397 (609)
T 4b2g_A 322 LDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP----LSRDSPPRLVDLAHVEVGK 397 (609)
T ss_dssp HHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC----CCSSSCCCCEEGGGCCTTC
T ss_pred HHHHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc----cccCCCCccccHhHcCCCC
Confidence 999999999999999999999999999999988889999999999999999875210 0012578999999999999
Q ss_pred eEEEEEeecccccceecCCeEeee--------------------------------------------------------
Q 010023 411 EYEIVLTSFTGLYRYRLGDVVEVA-------------------------------------------------------- 434 (520)
Q Consensus 411 ~YelViTt~~GLyRYriGDvVrv~-------------------------------------------------------- 434 (520)
+|||||||.+||||||+||+|+|+
T Consensus 398 ~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 398 EYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp EEEEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred eEEEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence 999999999999999999999999
Q ss_pred ---------------------------hHHHHHhhhhccCCChhhHhhh-hcCCCCCcEEEEeccchHHHHHHHHHhCCC
Q 010023 435 ---------------------------VLNQCCHEMDVSFVDPGYVVSR-RTNSIGPLELCIVKRGAFRMILDYFVGNGA 486 (520)
Q Consensus 435 ---------------------------~l~~~c~~ld~~l~n~~Y~~~R-~~g~l~pl~v~iv~~g~F~~~~~~~~~~G~ 486 (520)
.+++||.+||++| |++|+.+| ..++|+||+|++|++|+|++|+++++++|+
T Consensus 478 d~~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~ 556 (609)
T 4b2g_A 478 DTKTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESL-NSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGA 556 (609)
T ss_dssp ECSSSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHS-CHHHHHHHHTSCCSCCCEEEEECTTCSCC----------
T ss_pred CCCCCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHh-CHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCC
Confidence 2455777788887 99999999 666999999999999999999999999999
Q ss_pred CCCCCCCCcccCCHHHHHHHhhccccccccccC
Q 010023 487 ALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAY 519 (520)
Q Consensus 487 ~~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~~~ 519 (520)
+++|+|+|||+++++++++|+++|+++|+|+++
T Consensus 557 ~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s~~~ 589 (609)
T 4b2g_A 557 SINQYKVPRCVNFTPIMELLDSRVVSSHFSPAL 589 (609)
T ss_dssp ------CCSSCC--CCHHHHHTTEEEEEECCSC
T ss_pred CCCCcCCCcccCCHHHHHHHHhcccccccCCCC
Confidence 999999999999999999999999999999875
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=1.1e-115 Score=955.29 Aligned_cols=480 Identities=35% Similarity=0.649 Sum_probs=408.0
Q ss_pred cCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHH
Q 010023 12 YGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQR 91 (520)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier 91 (520)
-..+.+++.++.|++.++||.++|+++|++||++|++|+|||+| |++|+++++||++|||++|||++|||||
T Consensus 9 ~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~--------f~~i~~~~~F~~~VPi~~Yedl~pyIeR 80 (581)
T 4eql_A 9 PIFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF--------LIDRFDKELFKKNVPIVSYEDIKPYLDR 80 (581)
T ss_dssp -----CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT--------TCCSCCHHHHHHHSCCBCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH--------hhcCCCHHHHHHhCCCccHHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred HhcCCCCCcccccccceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEeecCccccccC
Q 010023 92 IADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTKG 170 (520)
Q Consensus 92 ~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~~ 170 (520)
+++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++++|..++++++| ++ .||.|+|.+.+.+.+|++
T Consensus 81 i~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~-~Gk~l~l~~~~~~~~t~~ 159 (581)
T 4eql_A 81 VVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVE-EGKGMMFLFTKQESMTPS 159 (581)
T ss_dssp HHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCT-TSEEEECCCCCCCEECTT
T ss_pred HHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccc-cCCEEEEeccCCcccCCC
Confidence 9999977999999999999999999999999999999999988889999999999999 66 899999888888899999
Q ss_pred CceEecCccccccchhHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEEecchHHHHHHHHHHHHHH
Q 010023 171 GLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECW 250 (520)
Q Consensus 171 Gip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~ll~~~~~l~~~w 250 (520)
|+|+|++|++++++.+|+.+|......|++|.+++.++|..|++||||||||+++++|+.|+++|+++++++++.|+++|
T Consensus 160 G~~~g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~w 239 (581)
T 4eql_A 160 GLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSW 239 (581)
T ss_dssp SCEEECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CeeecccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999998866677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCCCCcHHHHHhhhccCC-CCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHH
Q 010023 251 QDICIDVREGSLSSSRITLPKMRKAVLDTIS-PKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLK 329 (520)
Q Consensus 251 ~~l~~dI~~g~~~~~~i~~~~~R~~l~~~l~-~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~~~~y~~ 329 (520)
+++|+||++|+++ ++++++++|.++..+++ |||++|++|+++|++ . +|.|++++|||||++|.||+||+|++|++
T Consensus 240 eel~~dI~~gtl~-~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~-~--~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~ 315 (581)
T 4eql_A 240 EELCSNIRSGHLS-NWVTDLGCQNSVSLVLGGPRPELADTIEEICNQ-N--SWKGIVKRLWPNTKYIETVVTGSMGQYVP 315 (581)
T ss_dssp HHHHHHHHHTCCC-TTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTS-S--CCTTHHHHHSTTCCEEEEECSGGGGGGHH
T ss_pred HHHHHHHHhCCCc-ccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcC-C--CccCCHHHhCCCCcEEEEEcCCChHHHHH
Confidence 9999999999999 89999999999999997 999999999999998 3 69999999999999999999999999999
Q ss_pred HHHhHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCC
Q 010023 330 KLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLG 409 (520)
Q Consensus 330 ~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G 409 (520)
+|++|+|++|+++++|+||||+||||++|.||++..+|+|+|+.+||||||+++. ++|++++++|||+|
T Consensus 316 ~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~-----------~~~~~v~l~eVe~G 384 (581)
T 4eql_A 316 MLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGG-----------DKNDVVDLEDVKLG 384 (581)
T ss_dssp HHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTT-----------CCSSCEEGGGCCTT
T ss_pred HHHHHcCCCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEecccc-----------CCCcEeCHHHcCCC
Confidence 9999999999999999999999999999999887789999999999999999864 24789999999999
Q ss_pred CeEEEEEeecccccceecCCeEeee-------------------------------------------------------
Q 010023 410 QEYEIVLTSFTGLYRYRLGDVVEVA------------------------------------------------------- 434 (520)
Q Consensus 410 ~~YelViTt~~GLyRYriGDvVrv~------------------------------------------------------- 434 (520)
++|||||||.+||||||+||+|+|+
T Consensus 385 ~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~ 464 (581)
T 4eql_A 385 CTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSY 464 (581)
T ss_dssp CEEEEEEECSSSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEE
T ss_pred ceEEEEEeeccceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEe
Confidence 9999999999999999999999999
Q ss_pred --------------h--------------------HHHHHhhhhccCCChhhHhhh-hcCCCCCcEEEEeccchHHHHHH
Q 010023 435 --------------V--------------------LNQCCHEMDVSFVDPGYVVSR-RTNSIGPLELCIVKRGAFRMILD 479 (520)
Q Consensus 435 --------------~--------------------l~~~c~~ld~~l~n~~Y~~~R-~~g~l~pl~v~iv~~g~F~~~~~ 479 (520)
. +++||.+||++| |++|+.+| ..++|+||+|++|++|+|++|++
T Consensus 465 ~~~~~~p~Hy~~~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~ 543 (581)
T 4eql_A 465 ADTSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESL-DNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMD 543 (581)
T ss_dssp EECSSSSBEEEEECC---------------CCHHHHHHHHHHHHHTS-CHHHHHHHHTTCCBCCCEEEC-----------
T ss_pred cCCCCCCCeEEEEEEEecccccccccccCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCccCCcEEEEeCCCcHHHHHH
Confidence 1 223667788887 99999999 66699999999999999999999
Q ss_pred HHHhCCCCCCCCCCCcccCCHHHHHHHhhcccccccc
Q 010023 480 YFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHS 516 (520)
Q Consensus 480 ~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~ 516 (520)
+++++|++++|+|+|||++|++++++|+++|+++|+|
T Consensus 544 ~~~~~G~~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 544 FFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580 (581)
T ss_dssp ---------------------------------CEEC
T ss_pred HHHhCCCCCCCcCCCcccCCHHHHHHHHhcchheeec
Confidence 9999999999999999999999999999999999998
No 4
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.56 E-value=6e-14 Score=148.12 Aligned_cols=283 Identities=19% Similarity=0.193 Sum_probs=162.0
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHHHhcCCCCCcccccccc
Q 010023 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPIT 107 (520)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier~~~Ge~~~ll~~~pi~ 107 (520)
++.++.|.+.|+++|+. .+++.|+++++. ..+.....+.+.+||+ ++|+++|++++.... .+ ..-...+.+.
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~-~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~--~~~~~~~~~~ 93 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRKFD-EAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FG--MFAVPQDRIS 93 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TT--TCSSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Cc--cccCChhHeE
Confidence 45678999999999997 588999999853 2344456788999998 699999999864321 01 1112344455
Q ss_pred eeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeecCccccccCCceEecCccccccchhH
Q 010023 108 KLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEF 187 (520)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~~~~f 187 (520)
+...||||| |+||-+++|++.+........ .....+++....+.+. . .+ .+...+..
T Consensus 94 ~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~----~~~~~~~~~~~d~~~~-~-~~----------~~~~~~~~------ 150 (437)
T 2y27_A 94 RIHASSGTT-GKPTVVGYTAADIDTWANLVA----RSIRAAGARRGDKVHV-S-YG----------YGLFTGGL------ 150 (437)
T ss_dssp EEEECCCTT-SSCCEEEECHHHHHHHHHHHH----HHHHHTTCCTTCEEEE-C-SC----------CSSSHHHH------
T ss_pred EEEECCCCC-CCceEEecCHHHHHHHHHHHH----HHHHHcCCCCCCEEEE-c-cc----------ccccccch------
Confidence 788899999 899999999987654332211 1112234431233332 1 11 10000000
Q ss_pred HhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEE-ecchHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 010023 188 KIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVREGSLSSSR 266 (520)
Q Consensus 188 ~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~~ 266 (520)
. ..+..++.+. ..+. ..+ +.+.+++.|++..+. -
T Consensus 151 ---~---------------------~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t-~- 185 (437)
T 2y27_A 151 ---G---------------------AHYGAERAGL------TVIPFGGG-------------QTEKQVQLIQDFRPD-I- 185 (437)
T ss_dssp ---H---------------------HHHHHHHTTC------EEECCCSC-------------CHHHHHHHHHHHCCS-E-
T ss_pred ---H---------------------HHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHhCCC-E-
Confidence 0 0000111110 1111 000 123444555555444 1
Q ss_pred CCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccC
Q 010023 267 ITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSA 343 (520)
Q Consensus 267 i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~ 343 (520)
+.+ -|..+..|.+...+ . +.-. -+++++ .+.+|+ ....++.+++.+ +++++ .
T Consensus 186 ---------l~~----~Ps~~~~l~~~~~~-~-----~~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~ 240 (437)
T 2y27_A 186 ---------IMV----TPSYMLSIADEIER-Q-----GLDP-VQSSLR---IGIFGAEPWTNDMRVAIEQRM-GIDAV-D 240 (437)
T ss_dssp ---------EEE----CHHHHHHHHHHHHH-T-----TCCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-E
T ss_pred ---------EEE----CHHHHHHHHHHHHH-c-----CCCc-ccCCee---EEEEcCccCCHHHHHHHHHHH-CcCEE-e
Confidence 222 23344444433222 1 1111 146788 444444 666788888888 67888 9
Q ss_pred ccccCcc--e-eeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc
Q 010023 344 DYGSTES--W-IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT 420 (520)
Q Consensus 344 ~Y~aSEg--~-igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~ 420 (520)
.||+||. . ++.+.... ..++.+.....++|+++.+. ++ .|..|+.+||+||+..
T Consensus 241 ~YG~TE~~g~~~~~~~~~~----~~g~~~~~~~~~~~i~d~~~--------------g~-----~~~~g~~Gel~v~~~t 297 (437)
T 2y27_A 241 IYGLSEVMGPGVASECVET----KDGPTIWEDHFYPEIIDPET--------------GE-----VLPDGELGELVFTSLT 297 (437)
T ss_dssp EEEETTTTEEEEEECCTTT----CSSCEECTTTEEEEEECTTT--------------CC-----BCCTTCCEEEEEEESS
T ss_pred cCCchhhcCCeeEEecCCC----CCceeEccCceEEEEEcCCC--------------CC-----CCCCCCccEEEEecCC
Confidence 9999994 3 55443211 11355555667889886431 23 5678999999999755
Q ss_pred c----ccceecCCeEeee
Q 010023 421 G----LYRYRLGDVVEVA 434 (520)
Q Consensus 421 G----LyRYriGDvVrv~ 434 (520)
. +.||++||++++.
T Consensus 298 ~~~~~~~~y~TGDl~~~~ 315 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLL 315 (437)
T ss_dssp CSSSCCCSEEEEEEECEE
T ss_pred cCCchhheeecCCEEEEe
Confidence 4 6799999999998
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.56 E-value=1.2e-13 Score=146.00 Aligned_cols=283 Identities=19% Similarity=0.171 Sum_probs=162.7
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHHHhcCCCCCcccccccc
Q 010023 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPIT 107 (520)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier~~~Ge~~~ll~~~pi~ 107 (520)
++.++.|.+.|+++|+. .+++.|+++++. ..+.....+.+++||+ ++|+++|++++.... .+ ..-...+.+.
T Consensus 23 ~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~-~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~--~~~~~~~~~~ 95 (443)
T 2y4o_A 23 DELQALQLERLKWSLRHAYDNVPHYRRTFD-AAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FG--LFAVPREQVV 95 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TT--TCSSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHH-HcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Cc--ccCCChhheE
Confidence 45678999999999997 588999999852 3344556788999998 799999999864321 01 0112344555
Q ss_pred eeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeecCccccccCCceEecCccccccchhH
Q 010023 108 KLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEF 187 (520)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~~~~f 187 (520)
+...||||| |+||-+++|++.+........ .....+++....+.+. . . |.+...+..
T Consensus 96 ~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~----~~~~~~~~~~~d~~l~-~-~----------~~~~~~~~~------ 152 (443)
T 2y4o_A 96 RVHASSGTT-GKPTVVGYTARDIDTWANVTA----RSIRAAGGRPGDTLHN-A-F----------GYGLFTGGL------ 152 (443)
T ss_dssp EEEEECCSS-SSCEEEEECHHHHHHHHHHHH----HHHHHTTCCTTCEEEE-C-S----------CCSSSHHHH------
T ss_pred EEEECCCCC-CCceEEecCHHHHHHHHHHHH----HHHHHcCCCCCCEEEE-e-c----------cCcccccHH------
Confidence 788899999 899999999987654332211 1111234331233332 1 1 111000000
Q ss_pred HhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEE-ecchHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 010023 188 KIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVREGSLSSSR 266 (520)
Q Consensus 188 ~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~~ 266 (520)
. ..+..++.|. ..+. ..+ +.+++++.|++..+. -
T Consensus 153 ---~---------------------~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t-~- 187 (443)
T 2y4o_A 153 ---G---------------------IHYGAERLGC------MVVPMSGG-------------QTEKQVQLIRDFEPK-I- 187 (443)
T ss_dssp ---H---------------------HHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHCCS-E-
T ss_pred ---H---------------------HHHHHHHcCC------EEEECCCC-------------CHHHHHHHHHHhCCc-E-
Confidence 0 0011111111 1111 001 223445555555544 1
Q ss_pred CCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccC
Q 010023 267 ITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSA 343 (520)
Q Consensus 267 i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~ 343 (520)
+.+ -|..+..|.+.... . +.-. -+++++ .+++|+ ....++.+++.+ +++++ .
T Consensus 188 ---------l~~----~Ps~~~~l~~~~~~-~-----~~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~ 242 (443)
T 2y4o_A 188 ---------ILV----TPSYMLNLIDEMVR-Q-----GMDP-AESSLK---IGIFGAEPWTQALRNEVETRV-GIDAL-D 242 (443)
T ss_dssp ---------EEE----CHHHHHHHHHHHHH-T-----TCCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TCEEE-E
T ss_pred ---------EEE----CHHHHHHHHHHHHH-c-----CCCc-ccCCce---EEEECCCcCCHHHHHHHHHHh-CcCEE-e
Confidence 222 23344444443332 1 1111 146788 444444 566788888888 67888 9
Q ss_pred ccccCcc--e-eeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc
Q 010023 344 DYGSTES--W-IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT 420 (520)
Q Consensus 344 ~Y~aSEg--~-igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~ 420 (520)
.||+||. . ++...... ..++.+.....++|.++.++ ++ .|..|+.+||+||+..
T Consensus 243 ~YG~TE~~g~~~~~~~~~~----~~g~~~~~~~~~~~i~d~~~--------------g~-----~~~~G~~Gel~v~~~t 299 (443)
T 2y4o_A 243 IYGLSEVMGPGVACECVET----KDGPVIWEDHFYPEIIDPVT--------------GE-----VLPDGSQGELVFTSLT 299 (443)
T ss_dssp EEEETTTTEEEEEEECTTT----CCSEEECTTTEEEEEECTTT--------------CC-----BCCTTCCEEEEEEESS
T ss_pred ccCchhhcCCeEEeccCCC----CCceEEccCCeEEEEEcCCC--------------CC-----CCCCCCceEEEEeCCC
Confidence 9999994 3 55443211 11355555667888886431 33 5678999999999754
Q ss_pred c----ccceecCCeEeee
Q 010023 421 G----LYRYRLGDVVEVA 434 (520)
Q Consensus 421 G----LyRYriGDvVrv~ 434 (520)
. +.||++||++++.
T Consensus 300 ~~~~p~~~y~TGDl~~~~ 317 (443)
T 2y4o_A 300 KEAMPVIRYRTRDLTALL 317 (443)
T ss_dssp CSSSCCSSEEEEEEECEE
T ss_pred cccChhheeecCCEEEEc
Confidence 3 5689999999998
No 6
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.52 E-value=1.4e-13 Score=145.35 Aligned_cols=282 Identities=19% Similarity=0.209 Sum_probs=161.1
Q ss_pred hcHHHHHHHHHHHHHHhccCChHHHHhhcCccCCCCCCCcChHHhhhcCCCCCcccchHHHHHHhcCCCCCccc--c-cc
Q 010023 29 ENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLT--Q-EP 105 (520)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~~~~~i~s~edFr~~VPl~~Yed~~pyier~~~Ge~~~ll~--~-~p 105 (520)
++.++.|.+.|+++++...++.|+|+++ ...+.....|.+.+|++ ++|++++++++.... ...++ . +.
T Consensus 17 ~~~~~~q~~~L~~~l~~~~~~p~y~~~~-~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p-------~~~~~~~~~~~ 87 (436)
T 3qov_A 17 EKLQELQLQRLKKTINIAANSPYYKEVF-SKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP-------FGLVAGDMKRD 87 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHH-HHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT-------TTTCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHH-HHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC-------CccccCCCcCC
Confidence 4567899999999998779999999885 33444556788999998 699999999875321 11221 2 33
Q ss_pred cceeeccccCCCCccceeecChhhHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeecCccccccCCceEecCccccccch
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASE 185 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~~~ 185 (520)
+.+...||||| |+||-++.|+..+....... ......+++....+.+. + .+.....+++
T Consensus 88 ~a~i~~TSGTT-G~PK~v~~th~~~~~~~~~~----~~~~~~~~~~~~d~~~~-~--~~~~~~~~~~------------- 146 (436)
T 3qov_A 88 GVRIHSSSGTT-GNPTVIVHSQHDLDSWANLV----ARCLYMVGIRKTDVFQN-S--SGYGMFTGGL------------- 146 (436)
T ss_dssp EEEEEECSCSS-SCCCEEEEEHHHHHHHHHHH----HHHHHHTTCCTTSEEEE-C--SCCTTCHHHH-------------
T ss_pred eEEEEECCCcC-CCCeEEEECHHHHHHHHHHH----HHHHHHcCCCCCCEEEE-C--cccccchhHH-------------
Confidence 55788999999 89999999998765432221 11112234331233322 1 1100000000
Q ss_pred hHHhhhhhhhcccCCchhhhccCchhhhHHHHHhhccccCCCccEEE-ecchHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 010023 186 EFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVREGSLSS 264 (520)
Q Consensus 186 ~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~ 264 (520)
...+..+..|. ..+. ..+ +-+.+++.|++..+.
T Consensus 147 --------------------------~~~~~~l~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t- 180 (436)
T 3qov_A 147 --------------------------GFQYGAERLGC------LTVPAAAG-------------NSKRQIKFISDFKTT- 180 (436)
T ss_dssp --------------------------HHHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHTCC-
T ss_pred --------------------------HHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHHCCC-
Confidence 00011111110 0111 001 113344555554444
Q ss_pred CCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcc
Q 010023 265 SRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLV 341 (520)
Q Consensus 265 ~~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~ 341 (520)
- +. --|..+..|.+.... . ++-. -.++++ .+.+|+ ....++.+++.+ +++++
T Consensus 181 ~----------~~----~~P~~~~~l~~~~~~-~-----~~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~ 235 (436)
T 3qov_A 181 A----------LH----AIPSYAIRLAEVFQE-E-----GIDP-RETTLK---TLVIGAEPHTDEQRRKIERML-NVKAY 235 (436)
T ss_dssp E----------EE----CCHHHHHHHHHHHHH-T-----TCCT-TSSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE
T ss_pred E----------EE----ECHHHHHHHHHHHHH-c-----CCCc-ccCCcc---EEEEeCCcCCHHHHHHHHHHh-CccEE
Confidence 1 11 123344444443332 1 1111 245777 555555 566778888888 67888
Q ss_pred cCccccCcc-eeeecCCCCCCCCCceeeeeCCceEEEEeeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc
Q 010023 342 SADYGSTES-WIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT 420 (520)
Q Consensus 342 ~~~Y~aSEg-~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~ 420 (520)
.+||+||+ ..++....... .++.+......+|.++.+ +++ .|..|+.+||+||+..
T Consensus 236 -~~YG~TE~~~~~~~~~~~~~---~g~~~~~~~~~v~i~d~~--------------~g~-----~~~~g~~Gel~v~~~~ 292 (436)
T 3qov_A 236 -NSFGMTEMNGPGVAFECQEQ---NGMHFWEDCYLVEIIDPE--------------TGE-----PVPEGEIGELVLTTLD 292 (436)
T ss_dssp -EEEEEGGGTEEEEEEECTTC---SSEEECTTTEEEEEECTT--------------TCS-----BCSTTCCEEEEEEESS
T ss_pred -ecCcchhhcCCeeEEecCCC---CeeEEccCceEEEEEECC--------------CCC-----CCCCCCceEEEEeccC
Confidence 99999997 33232222111 245555566778888633 133 6788999999999743
Q ss_pred ----cccceecCCeEeee
Q 010023 421 ----GLYRYRLGDVVEVA 434 (520)
Q Consensus 421 ----GLyRYriGDvVrv~ 434 (520)
.+.||++||++++.
T Consensus 293 ~~~~~~~~y~TGDl~~~~ 310 (436)
T 3qov_A 293 REMMPLIRYRTRDLTRIL 310 (436)
T ss_dssp CCSSCCCSEEEEEEECEE
T ss_pred cCCceEEEEEcCCEEEEc
Confidence 25689999999987
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.33 E-value=1.7e-11 Score=126.42 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHh-cc---CChHHHHhhcCccCCCC-CCCcChHHhhhcCCCCCcccchH-HHHHHhcCCCCCcccccccc
Q 010023 34 VQRETLRRILEQ-NY---DVEYLKKRLGDTKIQDM-DACEMETLYTSLVPLASHADLEP-YIQRIADGDTASLLTQEPIT 107 (520)
Q Consensus 34 ~Q~~~L~~iL~~-n~---~T~ygr~~~~~~~~~~~-~~i~s~edFr~~VPl~~Yed~~p-yier~~~Ge~~~ll~~~pi~ 107 (520)
.+++.|+++++. .. +++|+|+++ ...+.+. ..|++.+|++ ++|+++ ++++. +.+.+.. .. +..+.+.
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~p~Yr~~~-~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~~a 94 (369)
T 3hgu_A 22 DTNNFVQALMRWHFSKETGSPFWLGMR-EQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPADSHP 94 (369)
T ss_dssp CHHHHHHHHHHHHHSTTTSCHHHHHHG-GGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTCCC
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHH-HhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCccccE
Confidence 467788999986 56 899999995 3344444 6788999997 699999 99865 3222211 01 1445566
Q ss_pred eeeccccCCCCccceeecChhhHHH
Q 010023 108 KLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+...||||| |+||-+.+|+..+..
T Consensus 95 ~i~~TSGTT-G~PKgv~~t~~~~~~ 118 (369)
T 3hgu_A 95 QVYESGGTT-GAPKYVVAYDAWIEA 118 (369)
T ss_dssp EEEEECC----CCEEEEECHHHHHH
T ss_pred EEEECCCCC-CCCCEEEECHHHHHH
Confidence 888999999 899999999986644
No 8
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=98.20 E-value=1.1e-05 Score=86.36 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCCceEEEEEcCChHHHHHHHHhHhCCCCcccCccccCcce-ee-ecCCCCCCCCCceeeeeCCceEEEEeeCCccccCC
Q 010023 311 PNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESW-IG-VNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDC 388 (520)
Q Consensus 311 P~L~~i~~~~tG~~~~y~~~l~~~~g~~pi~~~~Y~aSEg~-ig-i~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~~~ 388 (520)
+.++ .+.+|+...-++++++.+++++++ ..||.||+. ++ .......+ ...+. ..|+. -++.++.+
T Consensus 272 ~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~-~~~G~-p~~~~-~~~i~d~~------ 338 (509)
T 3ivr_A 272 ASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRP-KSAGR-PLFWR-TVAVVDAE------ 338 (509)
T ss_dssp TTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGST-TSCCE-ECTTC-EEEEECTT------
T ss_pred hhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCC-Ccccc-cCCCc-EEEEECCC------
Confidence 4667 555666557778888889898988 999999983 22 22111111 11222 23332 23344321
Q ss_pred CCCCCCCCCCCccccCCCCCCCeEEEEEee---cccccc-------------eecCCeEeee
Q 010023 389 NSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR-------------YRLGDVVEVA 434 (520)
Q Consensus 389 ~~~~~~~~~~~~l~l~ele~G~~YelViTt---~~GLyR-------------YriGDvVrv~ 434 (520)
.+ +|..|+.+||+|+. ..|.|+ |++||++++.
T Consensus 339 ---------~~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~ 386 (509)
T 3ivr_A 339 ---------DR-----PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD 386 (509)
T ss_dssp ---------SC-----BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC
T ss_pred ---------CC-----CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC
Confidence 33 67889999999986 345554 9999999997
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=98.13 E-value=1.9e-05 Score=86.36 Aligned_cols=98 Identities=19% Similarity=0.425 Sum_probs=59.6
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCC--CCCCCCceeeeeCCceEEEEeeCCcc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDP--SLPPEDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~--~~p~~~~~~~l~p~~~ffEFip~~~~ 384 (520)
.++|+ .+++|+ ...-++++++.+ +++++ .+||.||+.+.+...+ ...++..+. ..|+. -++.+..
T Consensus 340 l~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~v~ivd~--- 409 (580)
T 3etc_A 340 FSTLK---YAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTPGY-KIELMDR--- 409 (580)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECTTC-EEEEECT---
T ss_pred Cccce---EEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCcccc-CCCCC-EEEEECC---
Confidence 46788 555555 455556777777 57888 9999999843332211 111222222 33333 2344432
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec----ccccc-----------------eecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF----TGLYR-----------------YRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~----~GLyR-----------------YriGDvVrv~ 434 (520)
+++ ++.+|+..||+|+.. .|+.+ |++||++++.
T Consensus 410 ------------~g~-----~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d 463 (580)
T 3etc_A 410 ------------DGR-----LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMD 463 (580)
T ss_dssp ------------TSC-----BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred ------------CCC-----CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEEC
Confidence 133 678899999999864 23443 9999999997
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=98.10 E-value=3.6e-05 Score=82.42 Aligned_cols=102 Identities=23% Similarity=0.294 Sum_probs=61.1
Q ss_pred cCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCccee-eec--CCC----CCCCCCceeeeeCCceEE
Q 010023 307 PKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GVN--VDP----SLPPEDVTFAVIPTFSYF 376 (520)
Q Consensus 307 ~~lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~i-gi~--~~~----~~p~~~~~~~l~p~~~ff 376 (520)
....|+++ .+..|+ ...-.+++++.+|+++++ .+||.||+.. ... ... .......+. ..|+.. +
T Consensus 256 ~~~~~~l~---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~-~ 329 (511)
T 3e7w_A 256 QDLLPHAD---TFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPDMN-I 329 (511)
T ss_dssp TTTCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTTCE-E
T ss_pred cccCCccc---EEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcc-eeCCCE-E
Confidence 34567788 444444 566677888889899998 9999999742 211 110 110101122 233332 2
Q ss_pred EEeeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec--------------------ccccceecCCeEeee
Q 010023 377 EFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF--------------------TGLYRYRLGDVVEVA 434 (520)
Q Consensus 377 EFip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~--------------------~GLyRYriGDvVrv~ 434 (520)
+.++. +++ +|..|+..||+|+.. .|-|.|++||++++.
T Consensus 330 ~i~d~---------------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~ 387 (511)
T 3e7w_A 330 FIMDE---------------EGQ-----PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ 387 (511)
T ss_dssp EEECT---------------TSC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE
T ss_pred EEECC---------------CCC-----CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc
Confidence 33332 133 678899999999842 233469999998876
No 11
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=98.05 E-value=1.5e-05 Score=86.32 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce-e-eecCCCCCCCCCceeeeeCCceEEEEeeCCcc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-I-GVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~-i-gi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~ 384 (520)
+++|+ .+.+|+ ....++++++.+|++++. .+||.||+. + ..+.......+..+. ..|+ .-.+.++.+
T Consensus 308 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~-- 379 (548)
T 2d1s_A 308 LSNLV---EIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGK-VVPL-FKAKVIDLD-- 379 (548)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBE-ECTT-CEEEEECTT--
T ss_pred cccee---EEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCc-cCCC-ceEEEEeCC--
Confidence 46777 555554 566677888889888888 999999984 2 222211111111222 2333 233444321
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc---ccc--------------ceecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT---GLY--------------RYRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~---GLy--------------RYriGDvVrv~ 434 (520)
+++ +|..|+..||+|+..+ |.| .|++||++++.
T Consensus 380 ------------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~ 429 (548)
T 2d1s_A 380 ------------TKK-----SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429 (548)
T ss_dssp ------------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred ------------cCc-----cCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEc
Confidence 133 5778999999998632 222 49999999997
No 12
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=98.02 E-value=1.7e-05 Score=84.97 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=59.5
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeec---CCCC----CCCCCceeeeeCCceEEEE
Q 010023 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVN---VDPS----LPPEDVTFAVIPTFSYFEF 378 (520)
Q Consensus 309 lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~---~~~~----~p~~~~~~~l~p~~~ffEF 378 (520)
-.|+++ .+..|+ ...-++++.+.+++++++ .+||.||+...+. .... ......+. ..|+.. .+.
T Consensus 262 ~~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~~-~~i 335 (521)
T 3l8c_A 262 KMPALT---HFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDSP-TYI 335 (521)
T ss_dssp TCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTSC-EEE
T ss_pred cCccce---EEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcccccc-ccCCCE-EEE
Confidence 356777 444444 555667777888898998 9999999843211 1100 00011122 223322 223
Q ss_pred eeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEee---ccccc-----------------ceecCCeEeee
Q 010023 379 IPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLY-----------------RYRLGDVVEVA 434 (520)
Q Consensus 379 ip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt---~~GLy-----------------RYriGDvVrv~ 434 (520)
++. +++ +|..|+..||+|+. ..|.| -|++||++++.
T Consensus 336 ~d~---------------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d 391 (521)
T 3l8c_A 336 IDE---------------DGK-----ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT 391 (521)
T ss_dssp ECT---------------TSC-----BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC
T ss_pred ECC---------------CcC-----CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe
Confidence 321 133 67889999999987 23443 29999999997
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=98.02 E-value=7e-05 Score=80.02 Aligned_cols=100 Identities=20% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCCCCCCceeeeeCCceEEEEeeCCcccc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~ 386 (520)
.++|+ .+.+|+ ....++++++.+| ++++ ..||.||+.+.+...... .+..+. ..|+. -...++.+ +
T Consensus 271 l~~lr---~~~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~-~~~~g~-p~~~~-~~~i~~~~--~- 339 (504)
T 1t5h_X 271 LDSLR---HVTFAGATMPDAVLETVHQHLP-GEKV-NIYGTTEAMNSLYMRQPK-TGTEMA-PGFFS-EVRIVRIG--G- 339 (504)
T ss_dssp CTTCC---EEEECCTTCCHHHHHHHHHHCC-SEEE-EEEEETTTEEEEEEESCS-SSSEEB-CCTTC-CEEEECTT--S-
T ss_pred Ccccc---EEEEcCCcCCHHHHHHHHHhcC-ccee-eeeccccccccccccCCC-CCcccc-CCCCC-ceeEEecc--C-
Confidence 46788 555555 5556677777775 5777 899999985443321111 111111 12222 12223221 0
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCeEEEEEe-e---cccccc-------------eecCCeEeee
Q 010023 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLT-S---FTGLYR-------------YRLGDVVEVA 434 (520)
Q Consensus 387 ~~~~~~~~~~~~~~l~l~ele~G~~YelViT-t---~~GLyR-------------YriGDvVrv~ 434 (520)
...+ .|..|+..||+|+ . ..|.|+ |++||++++.
T Consensus 340 ---------~~~~-----~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~ 390 (504)
T 1t5h_X 340 ---------GVDE-----IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390 (504)
T ss_dssp ---------CTTC-----BCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred ---------CCCC-----cCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEEC
Confidence 0112 6788999999998 3 246665 9999999998
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=97.96 E-value=1.7e-05 Score=84.95 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=30.0
Q ss_pred CCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 308 KLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 308 ~lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
...|+++ .+.+|+ ...-.+++++.+++++++ .+||.||+.
T Consensus 258 ~~~~~lr---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~ 300 (512)
T 3fce_A 258 SMLPNMK---TFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEAT 300 (512)
T ss_dssp TTSTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGS
T ss_pred hhCcccc---EEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhh
Confidence 3456788 445444 556667788889898998 999999984
No 15
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=97.95 E-value=0.00024 Score=76.83 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=59.3
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCC--CCCCCceeeeeCCceEEEEeeCCcc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS--LPPEDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~--~p~~~~~~~l~p~~~ffEFip~~~~ 384 (520)
.++|+ .+.+|+ ...-++++++.+|...+. .+||.||+...+-..+. ..++..+. ..|+ .-.+.++.+
T Consensus 306 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-~~~~-~~~~i~d~~-- 377 (550)
T 3rix_A 306 LSNLH---EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGK-VVPF-FEAKVVDLD-- 377 (550)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEE-ECTT-CEEEEECTT--
T ss_pred ccccc---EEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCccc-ccCC-cEEEEEeCC--
Confidence 56788 555555 556667778888654465 99999998432222221 11121222 2333 233444322
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---cccc--------------ceecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY--------------RYRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy--------------RYriGDvVrv~ 434 (520)
+++ +|..|+..||+|+.. .|.| .|++||++++.
T Consensus 378 ------------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~ 427 (550)
T 3rix_A 378 ------------TGK-----TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427 (550)
T ss_dssp ------------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred ------------CCc-----CCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe
Confidence 133 678899999999853 2222 29999999997
No 16
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=97.93 E-value=0.00016 Score=77.34 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=58.5
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecC--CCCCCCCCceeeeeCCceEEEEeeCCc
Q 010023 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNV--DPSLPPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 309 lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~--~~~~p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
..++++ .+.+|+ ...-++.+++.+ +++++ ..||.||+.+.... +....++..+. ..|+. -.+.++.+
T Consensus 266 ~~~~lr---~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~- 337 (503)
T 4fuq_A 266 TTGHMR---LFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVGP-ALPGV-SARVTDPE- 337 (503)
T ss_dssp TTTTCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEEE-BCTTC-EEEEECTT-
T ss_pred chhhcE---EEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCcccc-CCCCe-EEEEEECC-
Confidence 356777 555555 455556677777 46787 99999998543211 11111111121 22332 23333321
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEee---cccccc--------------eecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGLYR--------------YRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt---~~GLyR--------------YriGDvVrv~ 434 (520)
+++ +|..|+..||+|+. ..|.|. |++||++++.
T Consensus 338 -------------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~ 387 (503)
T 4fuq_A 338 -------------TGK-----ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID 387 (503)
T ss_dssp -------------TCC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred -------------CCC-----CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc
Confidence 233 67899999999985 234432 9999999997
No 17
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=97.82 E-value=0.00014 Score=78.48 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=22.1
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+.+...||||| |+||-+..|+..+..
T Consensus 180 ~d~a~i~~TSGTT-G~PKgV~~sh~~l~~ 207 (549)
T 3g7s_A 180 EDVALIPYTGGTT-GMPKGVMLTHFNLAA 207 (549)
T ss_dssp TSEEECCEECCCC-C-CEEEEEEHHHHHH
T ss_pred CCEEEEEECCCcc-CCCceEEEcHHHHHH
Confidence 4455788899999 899999999987644
No 18
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=97.79 E-value=4.9e-05 Score=82.09 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=58.1
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCCC---CCCceeeeeCCceEEEEeeCCc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLP---PEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p---~~~~~~~l~p~~~ffEFip~~~ 383 (520)
.++|+ .+.+|+ ....++++++.+ ++++. .+||.||+.+.+....... .+..+. .+++..-...++.
T Consensus 297 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d~-- 368 (539)
T 1mdb_A 297 LSSLQ---VLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRLDDPEEIIVNTQGK-PMSPYDESRVWDD-- 368 (539)
T ss_dssp CTTCC---EEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCE-ESSTTCEEEEECT--
T ss_pred cccee---EEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCCCCcHHhcCCCCCc-ccCCCceEEEECC--
Confidence 36788 455444 455666677777 56877 9999999865543211100 001122 2222222333321
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc---ccc--------------ceecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT---GLY--------------RYRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~---GLy--------------RYriGDvVrv~ 434 (520)
+++ +|..|+..||+|+..+ |.| .|++||++++.
T Consensus 369 -------------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 418 (539)
T 1mdb_A 369 -------------HDR-----DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418 (539)
T ss_dssp -------------TSC-----BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred -------------CCC-----CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEEC
Confidence 133 6788999999998632 322 39999999997
No 19
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=97.79 E-value=6.1e-05 Score=81.43 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=57.8
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCCCC---CCceeeeeCCceEEEEeeCCcc
Q 010023 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPP---EDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 311 P~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~---~~~~~~l~p~~~ffEFip~~~~ 384 (520)
++|+ .+.+|+ ...-++.+++.+ +++++ ..||.||+.+.....+.... ...+..+.++ .-++.++.
T Consensus 307 ~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~--- 377 (544)
T 3o83_A 307 QSLK---LLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD-DEIKIVDE--- 377 (544)
T ss_dssp TTCC---EEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCTT-CEEEEECT---
T ss_pred Ccce---EEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecCCC-cEEEEECC---
Confidence 4677 444444 555667777777 66887 99999998644322111100 0112222222 22334431
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc---ccc--------------ceecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT---GLY--------------RYRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~---GLy--------------RYriGDvVrv~ 434 (520)
+.+ +|..|+..||+|+..+ |.| .|++||++++.
T Consensus 378 ------------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 427 (544)
T 3o83_A 378 ------------QYR-----EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRT 427 (544)
T ss_dssp ------------TSC-----BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEEC
T ss_pred ------------CCC-----CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEc
Confidence 133 6788999999998742 333 29999999998
No 20
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=97.71 E-value=9.7e-05 Score=79.62 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce--eeecCC----C-CCCCCCceeeeeCCceEEEE
Q 010023 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW--IGVNVD----P-SLPPEDVTFAVIPTFSYFEF 378 (520)
Q Consensus 309 lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~--igi~~~----~-~~p~~~~~~~l~p~~~ffEF 378 (520)
-.++|+ .+.+|+ ...-.+.+++.+|+++++ .+||.||+. ++.... + ...++..+. ..|+. -.+.
T Consensus 295 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i 368 (536)
T 3ni2_A 295 DLSSLR---MIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRNA-EMKI 368 (536)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEE
T ss_pred CCccce---EEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCCCc-EEEE
Confidence 456788 555554 556667788889898988 999999984 233211 1 011111222 23332 2344
Q ss_pred eeCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---cccc--------------ceecCCeEeee
Q 010023 379 IPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLY--------------RYRLGDVVEVA 434 (520)
Q Consensus 379 ip~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLy--------------RYriGDvVrv~ 434 (520)
++.+ +++ .|..|+..||+|+.. .|.| .||+||++++.
T Consensus 369 ~d~~--------------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~ 422 (536)
T 3ni2_A 369 VDPE--------------TGA-----SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422 (536)
T ss_dssp ECTT--------------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred EeCC--------------CCc-----CCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEc
Confidence 4322 133 678899999999842 2322 29999999997
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=97.70 E-value=0.0001 Score=80.91 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=58.0
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCCCCC---CCceeeeeCCceEEEEeeCC
Q 010023 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPP---EDVTFAVIPTFSYFEFIPIH 382 (520)
Q Consensus 309 lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~~p~---~~~~~~l~p~~~ffEFip~~ 382 (520)
-.++|+ .+.+|+ ...-++++++.+ +++++ ..||.||+.+.....+.... ...+..+.++.. ...++.
T Consensus 300 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~-~~i~d~- 372 (617)
T 3rg2_A 300 QLASLK---LLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDE-VWVADA- 372 (617)
T ss_dssp TTTTCC---EEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCE-EEEECT-
T ss_pred cCCCcc---EEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCCCce-EEEECC-
Confidence 356788 555555 455566676666 56887 99999999654322111100 001222223322 222221
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---ccccc--------------eecCCeEeee
Q 010023 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLYR--------------YRLGDVVEVA 434 (520)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLyR--------------YriGDvVrv~ 434 (520)
+.+ .|..|+..||+|+.. .|.|. ||+||++++.
T Consensus 373 --------------~~~-----~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~ 422 (617)
T 3rg2_A 373 --------------EGN-----PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID 422 (617)
T ss_dssp --------------TSC-----BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred --------------CCC-----CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEc
Confidence 133 678899999999853 23332 9999999997
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=97.66 E-value=8.7e-05 Score=79.70 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=58.7
Q ss_pred CCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcc-eeee-cCCCCCCCCCceeeeeCCceEEEEeeCCcccc
Q 010023 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTES-WIGV-NVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386 (520)
Q Consensus 312 ~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg-~igi-~~~~~~p~~~~~~~l~p~~~ffEFip~~~~~~ 386 (520)
.++ .+.+|+ ....++++++.+ +++++ .+||.||+ .+.+ +.......+..+. ..|+ .-++.++.
T Consensus 301 ~lr---~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~----- 368 (529)
T 2v7b_A 301 AIR---ICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPG-YEIELRDE----- 368 (529)
T ss_dssp CCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECTT-CEEEEECT-----
T ss_pred ceE---EEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCccc-CCCC-CEEEEECC-----
Confidence 566 445454 556667777777 67888 99999997 3332 2211111222222 2333 33444432
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---ccccc-------------eecCCeEeee
Q 010023 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLYR-------------YRLGDVVEVA 434 (520)
Q Consensus 387 ~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLyR-------------YriGDvVrv~ 434 (520)
+++ +|..|+..||+|+.. .|.|+ |++||++++.
T Consensus 369 ----------~g~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~ 417 (529)
T 2v7b_A 369 ----------AGH-----AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRL 417 (529)
T ss_dssp ----------TSC-----BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred ----------CCC-----CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEEC
Confidence 133 577899999999873 45554 8999999987
No 23
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=97.66 E-value=0.00037 Score=75.60 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=23.1
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+-+.+...||||| |+||-+..|...+..
T Consensus 167 ~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 194 (590)
T 3kxw_A 167 NDIAFLQYTSGST-MHPKGVMVSHHNLLD 194 (590)
T ss_dssp TSEEEEEECSSCS-SSCCEEEEEHHHHHH
T ss_pred CCeEEEEeCcCCC-CCceEEEeeHHHHHH
Confidence 3455788899999 999999999987644
No 24
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=97.63 E-value=0.00032 Score=75.09 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=23.1
Q ss_pred ccceeeccccCCCCccceeecChhhHHHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~~~ 133 (520)
-+.+...||||| |+||-+..|...+...
T Consensus 156 d~a~i~~TSGTT-G~PKgV~~sh~~l~~~ 183 (505)
T 3nyq_A 156 DPALVVYTSGTT-GPPKGAVIPRRALATT 183 (505)
T ss_dssp SEEEEEEECCSS-SSCEEEEEEHHHHHHH
T ss_pred CeEEEEeCCCCc-CCCCeEEEeHHHHHHH
Confidence 345788899999 8999999999876543
No 25
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=97.63 E-value=0.00093 Score=71.60 Aligned_cols=29 Identities=31% Similarity=0.294 Sum_probs=20.6
Q ss_pred ccccceeeccccCCCCccceeecChhhHHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
++-+.+...||||| |+||-+..|+..+..
T Consensus 169 ~~d~a~i~~TSGTT-G~PKgV~~sh~~l~~ 197 (517)
T 3r44_A 169 GDDNLFIMYTSGTT-GHPKGVVHTHESVHS 197 (517)
T ss_dssp TTSEEEEEEECC----CCEEEEEEHHHHHH
T ss_pred CCCeEEEEECCccc-ccCceeeeeHHHHHH
Confidence 34455888899999 899999999987644
No 26
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=97.61 E-value=0.00047 Score=75.05 Aligned_cols=98 Identities=20% Similarity=0.303 Sum_probs=57.1
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcceeeecCCCC--CCCCCceeeeeCCceEEEEeeCCcc
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPS--LPPEDVTFAVIPTFSYFEFIPIHRR 384 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~igi~~~~~--~p~~~~~~~l~p~~~ffEFip~~~~ 384 (520)
.++|+ .+++|+ ...-++++++.+ +++++ .+||.||+.+..-..+. ..++..+. ..|+. -.+.++.
T Consensus 321 ~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~v~i~d~--- 390 (570)
T 3c5e_A 321 FPHLQ---NCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASCY-DVQIIDD--- 390 (570)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-CEEEECT---
T ss_pred cccce---EEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccc-cCCCc-eEEEECC---
Confidence 46777 344333 555667777777 67887 99999998543222211 11111222 22332 2333332
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCCCeEEEEEe-----e---ccccc-------------ceecCCeEeee
Q 010023 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLT-----S---FTGLY-------------RYRLGDVVEVA 434 (520)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~ele~G~~YelViT-----t---~~GLy-------------RYriGDvVrv~ 434 (520)
+++ .|..|+..||+|+ . ..|.| .|++||++++.
T Consensus 391 ------------~g~-----~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d 444 (570)
T 3c5e_A 391 ------------KGN-----VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKD 444 (570)
T ss_dssp ------------TSC-----BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEEC
T ss_pred ------------CCC-----CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEc
Confidence 133 6788999999998 2 23443 28999999987
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=97.61 E-value=0.00025 Score=76.71 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=19.7
Q ss_pred cceeeccccCCCCccceeecChhhHHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~~ 133 (520)
+.+...||||| |+||-+..|+..+...
T Consensus 177 ~a~i~~TSGTT-G~PKgV~~th~~l~~~ 203 (562)
T 3ite_A 177 DAYLLYTSGST-GTPKGVRVSRHNLSSF 203 (562)
T ss_dssp EEEEEEECC----CCEEEEEEHHHHHHH
T ss_pred cEEEEECCCCC-CCCcEEEECchhHHHH
Confidence 45778899999 8999999999876543
No 28
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=97.57 E-value=0.00012 Score=79.54 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=27.5
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
.++|+ .+.+|+ ...-+.++.+.+++++++ .+||.||+.
T Consensus 325 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~ 365 (570)
T 4gr5_A 325 FEGVR---YAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESM 365 (570)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGC
T ss_pred CCCce---EEEEecccCCHHHHHHHHHhCCCcEEE-Eeechhhhe
Confidence 45677 445454 345667777788888888 999999973
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=97.57 E-value=0.00019 Score=77.38 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=22.9
Q ss_pred cccceeeccccCCCCccceeecChhhHHH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+.+...||||| |+||-+..|+..+..
T Consensus 176 ~d~a~i~~TSGTT-G~PKgV~~sh~~~~~ 203 (576)
T 3gqw_A 176 NDIAYLQYTSGST-RFPRGVIITHREVMA 203 (576)
T ss_dssp TSEEEEECTTSCS-SSCCCEEEEHHHHHH
T ss_pred CCeEEEEeCCCCC-CCCceEEeeHHHHHH
Confidence 3455888899999 899999999986643
No 30
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=97.43 E-value=0.00036 Score=80.83 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=59.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce--eeecCC----CC-CCCCCceeeeeCCceEEEEe
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW--IGVNVD----PS-LPPEDVTFAVIPTFSYFEFI 379 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~--igi~~~----~~-~p~~~~~~~l~p~~~ffEFi 379 (520)
.++|+ .+.+|+ ...-.+.+++.+|+++++ .+||.||+. ++.... +. ...+..+. ..|+. -++.+
T Consensus 343 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~ 416 (979)
T 3tsy_A 343 LSSIR---VVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRNA-EMKIV 416 (979)
T ss_dssp CTTCC---EEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEEE
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCCc-EEEEE
Confidence 46777 555555 445567778888898988 999999984 233211 10 00111122 23332 23344
Q ss_pred eCCccccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeec---ccccc--------------eecCCeEeee
Q 010023 380 PIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGLYR--------------YRLGDVVEVA 434 (520)
Q Consensus 380 p~~~~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~---~GLyR--------------YriGDvVrv~ 434 (520)
+.+ +++ .|..|+..||+|+.. .|.|. ||+||++++.
T Consensus 417 d~~--------------~~~-----~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~ 469 (979)
T 3tsy_A 417 DPD--------------TGD-----SLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469 (979)
T ss_dssp CTT--------------SCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred eCC--------------CCC-----CCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEc
Confidence 322 133 678899999999842 23332 9999999997
No 31
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=97.40 E-value=0.00046 Score=76.38 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=21.6
Q ss_pred cccceeeccccCCCCccceeecChhhH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+-+.+...||||| |+||-+..|+..+
T Consensus 256 ~d~a~ilyTSGTT-G~PKgV~~sh~~~ 281 (652)
T 1pg4_A 256 EDPLFILYTSGST-GKPKGVLHTTGGY 281 (652)
T ss_dssp TSEEEEEEECCSS-SSCEEEEEESHHH
T ss_pred CCCEEEEeccCCC-CCCceEEECchHH
Confidence 3345788899999 9999999998864
No 32
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=97.27 E-value=0.00092 Score=74.23 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.1
Q ss_pred ccceeeccccCCCCccceeecChhhH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
-+.+...||||| |+||-+..|...+
T Consensus 263 d~a~ilyTSGTT-G~PKgV~~sh~~~ 287 (663)
T 1ry2_A 263 DPLFLLYTSGST-GAPKGVQHSTAGY 287 (663)
T ss_dssp SCCEEEEECCSS-SSCEEEEECSHHH
T ss_pred CceEEEeccCCC-CCCceEEEchhHH
Confidence 345888899999 9999999998854
No 33
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=97.26 E-value=0.0017 Score=68.98 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=23.2
Q ss_pred ccccceeeccccCCCCccceeecChhhHHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
++.+.+...||||| |+||-+..|...+..
T Consensus 162 ~~d~a~i~~TSGTT-G~PKgv~~th~~~~~ 190 (501)
T 3ipl_A 162 LDDIASIMFTSGTT-GPQKAVPQTFRNHYA 190 (501)
T ss_dssp TTSEEEEEECCTTT-SCCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCC-CCCcEEEEeHHHHHH
Confidence 34455888899999 899999999886543
No 34
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=97.25 E-value=0.0022 Score=70.59 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=22.3
Q ss_pred ccccceeeccccCCCCccceeecChhhH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
++-+.+...||||| |+||-+.+|+..+
T Consensus 163 ~~d~a~iiyTSGST-G~PKgV~~th~~l 189 (620)
T 4dg8_A 163 ADQIAYINFSSGTT-GRPKAIACTHAGI 189 (620)
T ss_dssp TTSEEEEEEEBSSS-SSCEEEEEEHHHH
T ss_pred CCCeEEEEECCCcc-ccCeEEEEchHHH
Confidence 34455888899999 9999999998765
No 35
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=97.17 E-value=0.0003 Score=72.11 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=20.9
Q ss_pred ceeeccccCCCCccceeecChhhHHH
Q 010023 107 TKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 107 ~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
.+...||||| |+||-+..|++.+..
T Consensus 40 a~Il~TSGTT-G~PKgV~~th~~l~~ 64 (358)
T 4gs5_A 40 EFVLHTSGST-GMPKPITVTRAQLAA 64 (358)
T ss_dssp EEEEEEECTT-SSEEEEEEEHHHHHH
T ss_pred EEEEECCccc-ccCcEEEEeHHHHHH
Confidence 3667799999 999999999986644
No 36
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=97.17 E-value=0.0011 Score=71.92 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=17.1
Q ss_pred ccceeeccccCCCCccceeecChhhHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
.+.+...||||| |+||-+..|...+.
T Consensus 183 d~a~i~~TSGTT-G~PKgV~~th~~l~ 208 (563)
T 1amu_A 183 DLAYVIYTSGTT-GNPKGTMLEHKGIS 208 (563)
T ss_dssp SEEEEEEEC------CEEEEEESHHHH
T ss_pred CeEEEEECCCCC-CCCcEEEEehHHHH
Confidence 345778899999 89999999998764
No 37
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=96.93 E-value=0.0034 Score=65.98 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=16.9
Q ss_pred ccceeeccccCCCCccceeecChhhHHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
.+.+...||||| |+||-+..|...+..
T Consensus 184 d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 184 STAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp SEEEEECC-------CCCEEEEHHHHHH
T ss_pred ceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 355788899999 999999999987644
No 38
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=96.88 E-value=0.0037 Score=67.27 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.5
Q ss_pred cccceeeccccCCCCccceeecChhhH
Q 010023 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+.+...||||| |+||-+..|+..+
T Consensus 176 ~~~a~i~~TSGTT-G~PKgV~~sh~~l 201 (541)
T 1v25_A 176 RAACGMAYTTGTT-GLPKGVVYSHRAL 201 (541)
T ss_dssp TSEEEEEEECSSS-SSCEEEEEEHHHH
T ss_pred CCcEEEEECCCCC-CCCcEeeeehHHH
Confidence 3445777899999 8999999999865
No 39
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=96.42 E-value=0.0084 Score=71.58 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=22.8
Q ss_pred ccccceeeccccCCCCccceeecChhhHH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l~ 131 (520)
++-+.+...||||| |+||-+.+|+..+.
T Consensus 606 ~~~~ayiiyTSGST-G~PKgV~~~h~~l~ 633 (1304)
T 2vsq_A 606 PNDPAYIMYTSGTT-GKPKGNITTHANIQ 633 (1304)
T ss_dssp TTSEEEEEEECCSS-SSCEEEEEEHHHHH
T ss_pred CCCeEEEEeCCCCC-CCCCEEEEehHHHH
Confidence 34455888899999 99999999988653
No 40
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=26.15 E-value=72 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcccCC---CCCCCcHHHHHhhhccC--CCCHHHHHHHHHHhcc
Q 010023 246 FEECWQDICIDVREGSLS---SSRITLPKMRKAVLDTI--SPKPYLASKIEVACKK 296 (520)
Q Consensus 246 l~~~w~~l~~dI~~g~~~---~~~i~~~~~R~~l~~~l--~~~p~~A~~L~~~~~~ 296 (520)
.++.-.+++..|...... +..++..+|+.++.++. -|.|+-.+++++.+..
T Consensus 42 tdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA 97 (112)
T 2m0n_A 42 TEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAA 97 (112)
T ss_dssp CHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHh
Confidence 577778888888665331 14588889999999988 4888888888777665
No 41
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=22.20 E-value=59 Score=27.17 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCcHHHHHhhhccC--CCCHHHHHHHHHHhcc
Q 010023 246 FEECWQDICIDVREGSLSSSRITLPKMRKAVLDTI--SPKPYLASKIEVACKK 296 (520)
Q Consensus 246 l~~~w~~l~~dI~~g~~~~~~i~~~~~R~~l~~~l--~~~p~~A~~L~~~~~~ 296 (520)
.+++-.+++..|.+.......++..+|+.++.++. -|.|+-.+++++.+..
T Consensus 45 tddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa 97 (107)
T 3ol3_A 45 TEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLAS 97 (107)
T ss_dssp CHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 57777788877766543324588889999998877 4788888888777665
No 42
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=21.90 E-value=28 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=15.5
Q ss_pred EEEEeecccccceecCCeEeee
Q 010023 413 EIVLTSFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 413 elViTt~~GLyRYriGDvVrv~ 434 (520)
|-+-.+.+|+||+|+||-.|++
T Consensus 58 e~Lkg~l~g~~s~RI~~~yRiv 79 (96)
T 3oei_C 58 EPLQGELSGYWSRRIDDEHRLV 79 (96)
T ss_dssp EECCGGGTTCEEEESSSSCEEE
T ss_pred hhcCCCCCCcEEEECCCCEEEE
Confidence 3333467899999999955554
No 43
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=21.49 E-value=31 Score=30.23 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=25.5
Q ss_pred ccCCCCCCCeEEEEEeecccccceecCCeEeee
Q 010023 402 PLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 402 ~l~ele~G~~YelViTt~~GLyRYriGDvVrv~ 434 (520)
.|++|+.|+. ++|++..+-|+|++-++..|.
T Consensus 72 ~L~~l~~GD~--i~v~~~~~~~~Y~V~~~~vv~ 102 (147)
T 2ln7_A 72 DLGQLKEKDT--LVLEYDNKTYTYEIQKIWITH 102 (147)
T ss_dssp HHHHSSTTCE--EEEEETTEEEEEEEEEEEEEE
T ss_pred hhhcccCCCE--EEEEECCcEEEEEEEeEEEEC
Confidence 4568999985 677899999999998776665
Done!