Query 010023
Match_columns 520
No_of_seqs 145 out of 600
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 18:11:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pg4a_ e.23.1.1 (A:) Acetyl-C 97.4 0.00023 1.7E-08 76.0 10.2 24 106-130 254-277 (643)
2 d1amua_ e.23.1.1 (A:) Phenylal 96.6 0.0015 1.1E-07 66.2 7.4 26 106-132 168-193 (514)
3 d1lcia_ e.23.1.1 (A:) Lucifera 96.4 0.0059 4.3E-07 61.9 10.4 101 309-434 302-424 (541)
4 d1ry2a_ e.23.1.1 (A:) Acetyl-C 95.5 0.024 1.8E-06 59.3 11.0 24 106-130 241-264 (640)
5 d1mdba_ e.23.1.1 (A:) Dihydrox 94.6 0.047 3.4E-06 54.7 9.6 26 106-132 184-209 (536)
6 d3cw9a1 e.23.1.1 (A:1-503) 4-c 93.6 0.61 4.4E-05 45.3 15.3 28 105-133 154-181 (503)
7 d1v25a_ e.23.1.1 (A:) Long cha 54.9 2.1 0.00015 42.3 1.9 27 103-130 168-194 (534)
8 d1v25a_ e.23.1.1 (A:) Long cha 38.4 35 0.0026 32.7 8.3 36 310-351 285-323 (534)
9 d1wmia1 d.298.1.2 (A:1-88) Hyp 35.9 4.8 0.00035 30.2 0.8 16 418-434 52-67 (88)
10 d1t2wa_ b.100.1.1 (A:) Sortase 30.4 11 0.00081 30.8 2.3 31 402-434 71-101 (145)
11 d1ixra1 a.60.2.1 (A:63-135) DN 23.0 60 0.0043 23.3 4.9 54 227-296 14-67 (73)
No 1
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}
Probab=97.36 E-value=0.00023 Score=76.05 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=19.8
Q ss_pred cceeeccccCCCCccceeecChhhH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+...||||| |+||-|..|...+
T Consensus 254 ~a~IlyTSGTT-G~PKgV~~sh~~~ 277 (643)
T d1pg4a_ 254 PLFILYTSGST-GKPKGVLHTTGGY 277 (643)
T ss_dssp EEEEEEECCSS-SSCEEEEEESHHH
T ss_pred eEEEEeCCCcc-cCCCEEEEccHHH
Confidence 34677799999 9999999998753
No 2
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}
Probab=96.56 E-value=0.0015 Score=66.25 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=16.9
Q ss_pred cceeeccccCCCCccceeecChhhHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+...||||| |+||.++.|...+..
T Consensus 168 ~a~i~~TSGTT-G~PK~v~~s~~~~~~ 193 (514)
T d1amua_ 168 LAYVIYTSGTT-GNPKGTMLEHKGISN 193 (514)
T ss_dssp EEEEEEEC------CEEEEEESHHHHH
T ss_pred ceEEEEccCCC-CCccccccccccccc
Confidence 44788899999 899999999986543
No 3
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}
Probab=96.35 E-value=0.0059 Score=61.95 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=57.2
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce--eeecCCCCCCCCCceeeeeCCceEEEEeeCCc
Q 010023 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW--IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHR 383 (520)
Q Consensus 309 lWP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~--igi~~~~~~p~~~~~~~l~p~~~ffEFip~~~ 383 (520)
-+++++ .+.+|+ ...-...+.+.++...+. .+||+||+. +.++......++..+. .+|+..+ -.+..+
T Consensus 302 ~~~~l~---~v~~gG~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~svG~-p~~~~~~-~i~d~d- 374 (541)
T d1lcia_ 302 DLSNLH---EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGK-VVPFFEA-KVVDLD- 374 (541)
T ss_dssp CCTTCC---EEECTTCCCCHHHHHHHHHHTTCSCCB-CEECCGGGSSCSEECCCC---CCCCBE-ECTTCEE-EEECTT-
T ss_pred ccccce---EEEecccccccccccccccccCCceee-ecCCccccCceEEecCcccCCCCcccc-ccCCCEE-EEEECC-
Confidence 346777 666666 344445555667665555 999999984 3333222211222233 3444322 222211
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCCeEEEEEeecc---ccc--------------ceecCCeEeee
Q 010023 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT---GLY--------------RYRLGDVVEVA 434 (520)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~ele~G~~YelViTt~~---GLy--------------RYriGDvVrv~ 434 (520)
+++ .++.|+..||+|...+ |.| -|++||++++.
T Consensus 375 -------------~~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~ 424 (541)
T d1lcia_ 375 -------------TGK-----TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 424 (541)
T ss_dssp -------------TCC-----BCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred -------------CCc-----CCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEc
Confidence 233 5678889999997632 222 58999999998
No 4
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.54 E-value=0.024 Score=59.32 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=20.0
Q ss_pred cceeeccccCCCCccceeecChhhH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
+.+...||||| |+||-+..+...+
T Consensus 241 ~a~i~~TSGTT-G~PKgV~~~h~~~ 264 (640)
T d1ry2a_ 241 PLFLLYTSGST-GAPKGVQHSTAGY 264 (640)
T ss_dssp CCEEEEECCSS-SSCEEEEECSHHH
T ss_pred CCEEEECCCCC-CCCcceeeccccH
Confidence 44778899999 9999999888754
No 5
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}
Probab=94.63 E-value=0.047 Score=54.75 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=21.6
Q ss_pred cceeeccccCCCCccceeecChhhHHH
Q 010023 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (520)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 132 (520)
+.+...||||| |+||-++.|...+..
T Consensus 184 ~a~i~~TSGTT-G~PKgV~~s~~~~~~ 209 (536)
T d1mdba_ 184 VAFLQLSGGST-GLSKLIPRTHDDYIY 209 (536)
T ss_dssp EEEEEECCCSS-SSCCEEEEEHHHHHH
T ss_pred hHHhhhccccc-ccceecccccccccc
Confidence 44777899999 999999999886643
No 6
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}
Probab=93.55 E-value=0.61 Score=45.28 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=22.9
Q ss_pred ccceeeccccCCCCccceeecChhhHHHH
Q 010023 105 PITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (520)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~l~~~ 133 (520)
.+.+...||||| |.||.+..|...+...
T Consensus 154 ~~a~i~~TSGTT-G~pK~v~~s~~~~~~~ 181 (503)
T d3cw9a1 154 QPAFIFYTSGTT-GLPKAAIIPQRAAESR 181 (503)
T ss_dssp SEEEEEEECCSS-SSCEEEEEEGGGHHHH
T ss_pred hhhhhccccccc-ccccccccccchhhhh
Confidence 345778899999 8999999999876543
No 7
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}
Probab=54.94 E-value=2.1 Score=42.28 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.2
Q ss_pred ccccceeeccccCCCCccceeecChhhH
Q 010023 103 QEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (520)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~l 130 (520)
++.+.+...||||| |.||-++.|...+
T Consensus 168 ~~~~a~i~~TSGTT-G~PKgv~~s~~~l 194 (534)
T d1v25a_ 168 ERAACGMAYTTGTT-GLPKGVVYSHRAL 194 (534)
T ss_dssp TTSEEEEEEECSSS-SSCEEEEEEHHHH
T ss_pred cCCcEEEEEecCCC-CCccccccccchh
Confidence 34455788899999 8999999998865
No 8
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}
Probab=38.42 E-value=35 Score=32.66 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=22.4
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcce
Q 010023 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (520)
Q Consensus 310 WP~L~~i~~~~tG~---~~~y~~~l~~~~g~~pi~~~~Y~aSEg~ 351 (520)
.++|+ .+.+|+ ...-.+.++++ +.++. .+||.||+.
T Consensus 285 ~~~lr---~~~~gG~~~~~~~~~~~~~~--~~~i~-~~yG~te~~ 323 (534)
T d1v25a_ 285 LKTLR---RLVVGGSAAPRSLIARFERM--GVEVR-QGYGLTETS 323 (534)
T ss_dssp CSSCC---EEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGS
T ss_pred cccee---EEEEecCCCCHHHHHHHHHh--CCeee-eeccccccc
Confidence 45788 555555 23333445443 44666 999999994
No 9
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=35.91 E-value=4.8 Score=30.16 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=13.2
Q ss_pred ecccccceecCCeEeee
Q 010023 418 SFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 418 t~~GLyRYriGDvVrv~ 434 (520)
...|+||+|+|| .|+.
T Consensus 52 ~~~~~~rlRvG~-YRii 67 (88)
T d1wmia1 52 GDLDLYRARLGD-YRVI 67 (88)
T ss_dssp SSEEEEEEECSS-SEEE
T ss_pred CCCCEEEEEeCC-cEEE
Confidence 466899999999 7776
No 10
>d1t2wa_ b.100.1.1 (A:) Sortase A {Staphylococcus aureus [TaxId: 1280]}
Probab=30.42 E-value=11 Score=30.78 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=25.5
Q ss_pred ccCCCCCCCeEEEEEeecccccceecCCeEeee
Q 010023 402 PLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVA 434 (520)
Q Consensus 402 ~l~ele~G~~YelViTt~~GLyRYriGDvVrv~ 434 (520)
.|++|+.|+. ++|++..|-|+|++-++-.|.
T Consensus 71 ~L~~l~~Gd~--i~v~~~~~~~~Y~V~~~~~v~ 101 (145)
T d1t2wa_ 71 NLKAAKKGSM--VYFKVGNETRKYKMTSIRDVK 101 (145)
T ss_dssp TGGGCCTTCE--EEEEETTEEEEEEEEEEEEEC
T ss_pred cccccccceE--EEEEeCCEEEEEEEEEEEEEe
Confidence 5778999984 678999999999998776555
No 11
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=22.98 E-value=60 Score=23.29 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=39.1
Q ss_pred CccEEEecchHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcc
Q 010023 227 QVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKK 296 (520)
Q Consensus 227 ~l~~i~~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~~i~~~~~R~~l~~~l~~~p~~A~~L~~~~~~ 296 (520)
+|.-|++-.+..+++.+ .++++++.|.++... .|.+++.-.+..|++|--+.+.
T Consensus 14 ~V~GIGpk~Al~iLs~~-----~~~~l~~aI~~~D~~-----------~L~~vpGIG~KtA~rIi~eLk~ 67 (73)
T d1ixra1 14 SVSGVGPKVALALLSAL-----PPRLLARALLEGDAR-----------LLTSASGVGRRLAERIALELKG 67 (73)
T ss_dssp SSSCCCHHHHHHHHHHS-----CHHHHHHHHHTTCHH-----------HHTTSTTCCHHHHHHHHHHHTT
T ss_pred ccCCcCHHHHHHHHHHc-----cHHHHHHHHHhcCHH-----------HhhcCCCCCHHHHHHHHHHHHh
Confidence 55666655555554322 588999999988666 5778888889999999887664
Done!