Your job contains 1 sequence.
>010028
MEEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ
ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA
RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI
ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL
VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD
KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL
YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF
REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK
DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010028
(520 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130839 - symbol:RH1 "RNA helicase 1" species:... 1367 9.5e-187 2
UNIPROTKB|E2R5R1 - symbol:DDX51 "Uncharacterized protein"... 555 3.6e-76 2
UNIPROTKB|F1MGC9 - symbol:DDX51 "Uncharacterized protein"... 566 5.9e-76 2
UNIPROTKB|Q8N8A6 - symbol:DDX51 "ATP-dependent RNA helica... 556 6.7e-75 2
ZFIN|ZDB-GENE-040927-28 - symbol:ddx51 "DEAD (Asp-Glu-Ala... 532 4.1e-73 2
RGD|1309580 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box po... 532 5.3e-73 2
MGI|MGI:1916913 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) bo... 531 1.1e-72 2
UNIPROTKB|E1BUI4 - symbol:DDX51 "Uncharacterized protein"... 531 2.3e-72 2
ASPGD|ASPL0000059362 - symbol:AN0637 species:162425 "Emer... 407 4.8e-58 2
FB|FBgn0004556 - symbol:Dbp73D "Dead box protein 73D" spe... 386 1.8e-54 2
DICTYBASE|DDB_G0293740 - symbol:ddx51 "DEAD/DEAH box heli... 374 5.7e-47 2
POMBASE|SPCC285.03 - symbol:SPCC285.03 "ATP-dependent RNA... 349 4.2e-44 2
UNIPROTKB|G4N9X9 - symbol:MGG_03229 "ATP-dependent RNA he... 227 9.0e-42 3
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 273 4.0e-38 3
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 265 4.1e-38 3
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 262 2.8e-37 4
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 261 3.8e-37 3
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 263 7.3e-37 3
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 254 1.2e-36 3
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 260 1.3e-36 3
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 260 2.2e-36 3
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 260 2.5e-36 3
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 256 4.6e-36 3
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 254 2.7e-35 3
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 237 4.9e-35 3
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 248 1.5e-34 3
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 254 2.4e-34 3
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 254 3.4e-34 3
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 253 9.6e-34 3
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 235 9.7e-34 3
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 233 4.0e-33 3
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 233 4.0e-33 3
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 226 4.4e-33 3
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 235 5.5e-33 3
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 217 7.1e-33 4
SGD|S000005321 - symbol:DBP6 "Essential protein involved ... 298 7.2e-33 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 258 1.2e-32 3
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 214 3.7e-32 3
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 239 7.8e-32 4
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 222 8.9e-32 3
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 221 1.6e-31 3
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 215 1.9e-31 4
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 245 3.6e-31 3
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo... 237 4.5e-31 4
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 236 5.2e-31 4
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 246 6.2e-31 3
TAIR|locus:2087832 - symbol:PMH1 "putative mitochondrial ... 239 9.7e-31 3
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 234 1.0e-30 4
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 215 1.6e-30 4
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 223 1.7e-30 3
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 227 2.1e-30 3
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 230 3.0e-30 4
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 244 3.9e-30 3
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 218 4.0e-30 3
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 218 4.0e-30 3
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 230 4.8e-30 3
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 257 5.0e-30 2
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 230 5.2e-30 3
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 278 5.4e-30 3
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 278 5.4e-30 3
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 233 5.7e-30 3
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 278 5.8e-30 3
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 222 6.2e-30 3
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 229 8.9e-30 3
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 271 1.0e-29 3
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 203 1.1e-29 3
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 203 1.1e-29 3
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 185 1.2e-29 3
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 185 1.2e-29 3
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 276 1.2e-29 3
CGD|CAL0001062 - symbol:orf19.3704 species:5476 "Candida ... 349 1.4e-29 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 278 1.6e-29 3
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 222 2.1e-29 3
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 219 2.9e-29 3
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 217 3.1e-29 3
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 230 3.1e-29 3
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 227 3.1e-29 3
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 220 4.9e-29 4
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 221 7.1e-29 3
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 227 8.1e-29 3
TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ... 228 8.4e-29 3
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 209 9.3e-29 3
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 209 9.3e-29 3
RGD|621743 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box pol... 224 1.0e-28 3
MGI|MGI:1925644 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) bo... 226 1.2e-28 3
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 214 1.5e-28 3
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 195 2.3e-28 3
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 195 2.3e-28 3
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 214 2.3e-28 3
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 214 2.3e-28 3
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 213 2.5e-28 3
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 211 3.2e-28 3
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 211 3.2e-28 3
UNIPROTKB|A8MTP9 - symbol:DDX52 "Probable ATP-dependent R... 220 3.4e-28 3
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 234 3.9e-28 3
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 225 4.2e-28 3
UNIPROTKB|I3LJA0 - symbol:DDX52 "Uncharacterized protein"... 220 4.3e-28 3
WB|WBGene00000479 - symbol:cgh-1 species:6239 "Caenorhabd... 195 5.4e-28 3
UNIPROTKB|Q95YF3 - symbol:cgh-1 "ATP-dependent RNA helica... 195 5.4e-28 3
UNIPROTKB|F1NJA0 - symbol:DDX55 "ATP-dependent RNA helica... 214 6.8e-28 3
WARNING: Descriptions of 755 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130839 [details] [associations]
symbol:RH1 "RNA helicase 1" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 GO:GO:0017151 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z97339 GO:GO:0008026 eggNOG:COG0513
PROSITE:PS51195 EMBL:AL161542 KO:K14807 HOGENOM:HOG000239572
OMA:CSKTELE EMBL:Y11187 EMBL:Y11154 IPI:IPI00538787 PIR:A71424
PIR:E85175 RefSeq:NP_193320.6 UniGene:At.33
ProteinModelPortal:Q7FGZ2 SMR:Q7FGZ2 STRING:Q7FGZ2 PaxDb:Q7FGZ2
PRIDE:Q7FGZ2 EnsemblPlants:AT4G15850.1 GeneID:827266
KEGG:ath:AT4G15850 GeneFarm:907 TAIR:At4g15850 InParanoid:Q7FGZ2
Genevestigator:Q7FGZ2 GermOnline:AT4G15850 Uniprot:Q7FGZ2
Length = 522
Score = 1367 (486.3 bits), Expect = 9.5e-187, Sum P(2) = 9.5e-187
Identities = 264/361 (73%), Positives = 310/361 (85%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDI
Sbjct: 119 QVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDI 178
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274
LVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F
Sbjct: 179 LVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPS 238
Query: 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 334
+ F+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+T
Sbjct: 239 FTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMT 298
Query: 335 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 394
TG +RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN F
Sbjct: 299 TGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFF 358
Query: 395 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 454
G+ +IK KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P +
Sbjct: 359 GDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPF 418
Query: 455 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 514
KT+IHRAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP + ++S+R
Sbjct: 419 AKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRAT 478
Query: 515 Y 515
Y
Sbjct: 479 Y 479
Score = 466 (169.1 bits), Expect = 9.5e-187, Sum P(2) = 9.5e-187
Identities = 90/116 (77%), Positives = 102/116 (87%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+E K + V+PWMR+PVDVS E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW E
Sbjct: 5 KEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHE 64
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
TIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQV
Sbjct: 65 TIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQV 120
Score = 42 (19.8 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 219 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 254
P +D I AT LE L LV E + R+A++
Sbjct: 468 PPTSLDSIRATYTPALEKLKELVESEAPKKGRQAFR 503
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 555 (200.4 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 141/378 (37%), Positives = 204/378 (53%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QV VF A L V L GQ S+ E L+++ + + D+
Sbjct: 260 QVSKVFNIYTDATPLRVALITGQKSLVKEQESLVQK-------------TVDGFRCLADV 306
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNENRFS 273
+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V++ SD N
Sbjct: 307 VVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVEAAFPSDVAN--- 363
Query: 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LF 332
D L L+ + P L K++ SATLTQ+P KL QL L+ P LF
Sbjct: 364 DPFALLQRR--QLQATTAASISC-----PQMPLQKLLFSATLTQNPEKLQQLGLYQPRLF 416
Query: 333 LT------------TGET--RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 378
T GE+ +Y P L + + C + KPL ++ L+ + + FT
Sbjct: 417 STGLAGRGPRDIDRDGESGGKYTFPTGLSHHYVPCSLRTKPLAILHLILERNFSRVLCFT 476
Query: 379 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 438
+S E++HRL L+ FG + E+S R R LK F +GKIQ+L+S+DAM RG+
Sbjct: 477 NSRENSHRLFLLVQAFGG--VAAAEFSSRCRPGQRKVVLKQFEQGKIQLLISTDAMARGI 534
Query: 439 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 498
DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 535 DVQGVQLVINYDAPQYLRTYVHRVGRTARAGRTGQAFTLLLKVQERRFLQMLAEAGVPKM 594
Query: 499 PIHSIPSSLIESLRPVYK 516
H I S L++ L P Y+
Sbjct: 595 ARHDIHSELLQPLVPRYE 612
Score = 231 (86.4 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 60/126 (47%), Positives = 81/126 (64%)
Query: 7 KSMPVLP-WMRSPVDV--SLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K+ P LP W+ P V S+ ED P++ +P + P ++ LQ GISS FPVQ AV
Sbjct: 137 KAQPFLPLWLAEPSSVGKSVTEDLVPIEDIPEVHPDMQKKLQAHGISSYFPVQAAVIPTL 196
Query: 61 -ETIGPG-LFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+I G L R DLC+++PTGSGKTL++ +P+VQ L RAV +RALVVLPT++
Sbjct: 197 LESIANGFLVARGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLCRAVCQVRALVVLPTKE 256
Query: 113 LALQVN 118
LA QV+
Sbjct: 257 LAQQVS 262
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 566 (204.3 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 139/379 (36%), Positives = 202/379 (53%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QV VF A L V L GQ S+A E L++ K G + DI
Sbjct: 173 QVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQ--KTADGF-----------RCLADI 219
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274
+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V+ +E
Sbjct: 220 MVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVAAA-FPSEGPRDP 278
Query: 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 334
+ F + L C P L K++ SATLTQ+P KL QL L+ P +
Sbjct: 279 CAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFS 330
Query: 335 TGET-----------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 377
TG +Y P L+ + + C + KPL ++ L+ + + + F
Sbjct: 331 TGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRVLCF 390
Query: 378 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 437
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DAM RG
Sbjct: 391 TNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAMARG 448
Query: 438 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 497
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L++
Sbjct: 449 IDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLLLKVQERRFLRMLEEGGVPG 508
Query: 498 CPIHSIPSSLIESLRPVYK 516
H PS L++ L P Y+
Sbjct: 509 LERHDTPSELLQPLVPQYE 527
Score = 218 (81.8 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 56/126 (44%), Positives = 78/126 (61%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAV---- 58
K P LP W+ P V ++ E P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 50 KVQPFLPVWLAQPSCVGKNVTEGLVPIEDIPEVHPDLQKKLRAQGISSYFPVQAAVIPAV 109
Query: 59 WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+ T L R DLC+++PTGSGKTL++ +P+VQ L +RAV +RALVVLPT++
Sbjct: 110 LESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKE 169
Query: 113 LALQVN 118
LA QV+
Sbjct: 170 LAQQVS 175
>UNIPROTKB|Q8N8A6 [details] [associations]
symbol:DDX51 "ATP-dependent RNA helicase DDX51"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 KO:K14807 OMA:HIDQTPG CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK097078 EMBL:AC138466 EMBL:BC012461 EMBL:BC040185
EMBL:CR936870 IPI:IPI00217541 RefSeq:NP_778236.2 UniGene:Hs.445168
ProteinModelPortal:Q8N8A6 SMR:Q8N8A6 IntAct:Q8N8A6 STRING:Q8N8A6
PhosphoSite:Q8N8A6 DMDM:229462978 PaxDb:Q8N8A6 PRIDE:Q8N8A6
Ensembl:ENST00000397333 GeneID:317781 KEGG:hsa:317781
UCSC:uc001ujy.4 GeneCards:GC12M132621 H-InvDB:HIX0018137
HGNC:HGNC:20082 HPA:HPA039503 neXtProt:NX_Q8N8A6
PharmGKB:PA134974036 InParanoid:Q8N8A6 PhylomeDB:Q8N8A6
GenomeRNAi:317781 NextBio:96442 Bgee:Q8N8A6 CleanEx:HS_DDX51
Genevestigator:Q8N8A6 GermOnline:ENSG00000185163 Uniprot:Q8N8A6
Length = 666
Score = 556 (200.8 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 142/376 (37%), Positives = 202/376 (53%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QV VF A L V L GQ S+A E L++ K G Y + DI
Sbjct: 296 QVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQ--KTADG--Y---------RCLADI 342
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274
+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ F
Sbjct: 343 VVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA-------FQS 395
Query: 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 334
P A L+ + V P L K++ SATLTQ+P KL QL LH P +
Sbjct: 396 EDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFS 453
Query: 335 TG-------ET-------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 380
TG +T +Y P L + + C KPL ++ L+ +G + + FT+S
Sbjct: 454 TGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNS 513
Query: 381 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 440
E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG+DV
Sbjct: 514 RENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDV 571
Query: 441 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 500
+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 572 QGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQR 631
Query: 501 HSIPSSLIESLRPVYK 516
H + S L++ L P Y+
Sbjct: 632 HELSSKLLQPLVPRYE 647
Score = 218 (81.8 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 56/126 (44%), Positives = 80/126 (63%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPAL 232
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ +G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 233 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 292
Query: 113 LALQVN 118
LA QV+
Sbjct: 293 LAQQVS 298
>ZFIN|ZDB-GENE-040927-28 [details] [associations]
symbol:ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
51" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040927-28 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 EMBL:AY648772 IPI:IPI00500210 RefSeq:NP_001003864.1
UniGene:Dr.77952 ProteinModelPortal:Q6DRI7 STRING:Q6DRI7
PRIDE:Q6DRI7 GeneID:445387 KEGG:dre:445387 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 InParanoid:Q6DRI7
OrthoDB:EOG4JM7PM NextBio:20832091 ArrayExpress:Q6DRI7
Uniprot:Q6DRI7
Length = 652
Score = 532 (192.3 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 135/372 (36%), Positives = 193/372 (51%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QV +VF+A L V + GQ S A E + L ++ G+ + S DI
Sbjct: 287 QVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMADI 333
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274
+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V + S +
Sbjct: 334 VVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGE--TH 391
Query: 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFL 333
S F + G + P L K++ SATLTQ+P KL LDLH P LF
Sbjct: 392 TSVFRRTVPGPITAASL--------SPPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLFS 443
Query: 334 TT---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 384
+T + + P+ L Y + C KPL ++ L L + FT+S E
Sbjct: 444 STHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSREGA 503
Query: 385 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 444
HRL L+ FG +++ E+S R KTLK F +GKI +L+S+DA RG+D+ GV
Sbjct: 504 HRLYLLVKLFGG--VEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGVK 561
Query: 445 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 504
V+NYD P YI+TYIHR GRTARAG+ G FT L K + KRF K++ A + +
Sbjct: 562 CVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSPGIQKQHVH 621
Query: 505 SSLIESLRPVYK 516
++S+ Y+
Sbjct: 622 PEALKSMESRYE 633
Score = 225 (84.3 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 59/139 (42%), Positives = 82/139 (58%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDC-----PLDHLPCLDPRLKVALQNMGISSLFPVQ 55
E+ +K VLP W+ P DV + +D P+ +P + P L LQ GI S FPVQ
Sbjct: 159 EKDVQKVKRVLPQWLSQP-DV-IQKDIKSNLIPISEVPGICPTLLRKLQTNGIQSFFPVQ 216
Query: 56 VAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL
Sbjct: 217 AEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRAL 276
Query: 106 VVLPTRDLALQVNSARCKY 124
VLPT++LA QV++ Y
Sbjct: 277 AVLPTKELAQQVSNVFSAY 295
Score = 39 (18.8 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 406 GLQRQSVRSKTLKAFREGKIQVL 428
G+Q+Q V + LK+ QVL
Sbjct: 614 GIQKQHVHPEALKSMESRYEQVL 636
>RGD|1309580 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309580 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:HIDQTPG OrthoDB:EOG4JM7PM IPI:IPI00371200
Ensembl:ENSRNOT00000056729 UCSC:RGD:1309580 ArrayExpress:D3ZQ94
Uniprot:D3ZQ94
Length = 635
Score = 532 (192.3 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 137/381 (35%), Positives = 200/381 (52%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QV VF L V L GQ S+A E L++ K G C DI
Sbjct: 264 QVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTADGFC-----------CLADI 310
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274
+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 311 VVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA------------ 358
Query: 275 ASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP- 330
A+ + GS ++R V P L K++ SATLTQ+P KL +L L+ P
Sbjct: 359 AAFYTEDPTGSCALLQRTQPQAVTAASTCIPQMPLQKLLFSATLTQNPEKLQRLGLYQPR 418
Query: 331 LFLT---------TGET-----RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 376
LF T T E +Y P L + + C KPL + L+ + + +
Sbjct: 419 LFSTRLGHQSPRDTVEVDENLGKYTFPVGLTHHYVPCRLSSKPLIVFHLVLGMNFSRALC 478
Query: 377 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 436
FT+S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA R
Sbjct: 479 FTNSRENSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATAR 536
Query: 437 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 496
G+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 537 GIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVP 596
Query: 497 SCPIHSIPSSLIESLRPVYKS 517
H +P L++ L Y++
Sbjct: 597 ELACHEVPRKLLQPLVARYET 617
Score = 224 (83.9 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 57/126 (45%), Positives = 81/126 (64%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V S+ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 141 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGISSYFPVQAAVIPAL 200
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ +G G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 201 LESADNGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 260
Query: 113 LALQVN 118
LA QV+
Sbjct: 261 LAQQVS 266
>MGI|MGI:1916913 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1916913 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK152599 EMBL:BC060646 IPI:IPI00396728 RefSeq:NP_081432.2
UniGene:Mm.392735 UniGene:Mm.5267 ProteinModelPortal:Q6P9R1
SMR:Q6P9R1 PhosphoSite:Q6P9R1 PaxDb:Q6P9R1 PRIDE:Q6P9R1
Ensembl:ENSMUST00000031478 GeneID:69663 KEGG:mmu:69663
UCSC:uc008yre.2 InParanoid:Q6P9R1 ChiTaRS:DDX51 NextBio:330022
Bgee:Q6P9R1 CleanEx:MM_DDX51 Genevestigator:Q6P9R1
GermOnline:ENSMUSG00000029504 Uniprot:Q6P9R1
Length = 639
Score = 531 (192.0 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 136/378 (35%), Positives = 201/378 (53%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QV VF L V L GQ S+A E L++ K G + DI
Sbjct: 268 QVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTADGF-----------RCLADI 314
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274
+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ +S+
Sbjct: 315 VVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAF------YSE 368
Query: 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFL 333
T + L+ + + P L K++ SATLTQDP KL +L L+ P LF
Sbjct: 369 GPT---GSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFS 425
Query: 334 T---------TGET-----RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 379
T T E +Y P L + + C KPL ++ L+ + + + FT+
Sbjct: 426 TRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTN 485
Query: 380 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 439
S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA RG+D
Sbjct: 486 SRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGID 543
Query: 440 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 499
V+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 544 VQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVPELT 603
Query: 500 IHSIPSSLIESLRPVYKS 517
H IP L++ L Y++
Sbjct: 604 HHEIPRKLLQPLVARYET 621
Score = 222 (83.2 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 57/126 (45%), Positives = 81/126 (64%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV
Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPAL 204
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 205 LESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 264
Query: 113 LALQVN 118
LA QV+
Sbjct: 265 LAQQVS 270
>UNIPROTKB|E1BUI4 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:AADN02043240 IPI:IPI00601309 Ensembl:ENSGALT00000010245
Uniprot:E1BUI4
Length = 676
Score = 531 (192.0 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 141/379 (37%), Positives = 201/379 (53%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QV VF GL V L GQ S A E E++ + K+ G C S DI
Sbjct: 303 QVSKVFNIYTDGTGLKVVLITGQKSFAKE-QEMLVQKKV-TGYC-----------SLADI 349
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274
+VATPGRL DHI+ T GF+L L +L+VDE DR++ + +Q WL V++ EN
Sbjct: 350 IVATPGRLADHISKTPGFSLTQLRFLIVDEADRMIDDMHQNWLNQVVKAA-FQAENEAGS 408
Query: 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LF- 332
F + G + C P L K++ SATLTQDP KL QL L P LF
Sbjct: 409 NMLFQRTKPGPVTAASCC--------YPQIPLQKLLFSATLTQDPEKLQQLGLFQPRLFT 460
Query: 333 --------LTTG-------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 377
L G E +Y LPE L + C+ KPL L+ + + + + F
Sbjct: 461 SVYSEKKTLRDGTETKEDCEEKYTLPEGLSQSYVPCDLNSKPLLLLHFMLTKKFTRVLCF 520
Query: 378 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 437
T+S E++HRL L+ FG I + E+S + R +T+K F +GKIQ+L+S+DA RG
Sbjct: 521 TNSREASHRLFLLVQAFGG--ITVAEFSSRLPPNERQRTMKEFEQGKIQLLISTDATARG 578
Query: 438 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 497
+D++GVN V+NYD P +I+TYIHR GRTARAG+ G F+++ + + +RF ++L+ A
Sbjct: 579 IDIKGVNCVINYDTPQFIRTYIHRVGRTARAGKAGLAFSMVLRIQERRFLRMLKDAGIPD 638
Query: 498 CPIHSIPSSLIESLRPVYK 516
H + L++ L Y+
Sbjct: 639 IKQHLVKGKLLKPLVQQYE 657
Score = 219 (82.2 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 56/127 (44%), Positives = 78/127 (61%)
Query: 6 KKSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQV----A 57
+K P LP W+ P V + E+ P+ +P + P+L LQ GI S FPVQ A
Sbjct: 179 QKVQPFLPHWLAQPKLVQKRIKENLIPIRDVPGIHPKLLKKLQMNGIESFFPVQAEVIPA 238
Query: 58 VWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
V Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +R V +RALVVLPT+
Sbjct: 239 VLQSASNGYLVGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCQVRALVVLPTK 298
Query: 112 DLALQVN 118
+LA QV+
Sbjct: 299 ELAQQVS 305
>ASPGD|ASPL0000059362 [details] [associations]
symbol:AN0637 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14807 HOGENOM:HOG000203294 EMBL:AACD01000008 RefSeq:XP_658241.1
ProteinModelPortal:Q5BFP3 EnsemblFungi:CADANIAT00002039
GeneID:2876415 KEGG:ani:AN0637.2 OMA:KQAREAC OrthoDB:EOG4CRQ7F
Uniprot:Q5BFP3
Length = 853
Score = 407 (148.3 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 134/406 (33%), Positives = 194/406 (47%)
Query: 1 MEEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
+EEA+K + LP W+ +PV S L ++P+L L+ G F VQ AV
Sbjct: 224 VEEAEKPTYSSLPPWLANPVRASAETRAKFSDLG-IEPKLLRVLEVNGYKEAFAVQAAVI 282
Query: 60 QETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
+ GP D+C+++ TGSGKTLSY LP+V L LR L+V+PTR+L Q
Sbjct: 283 PLLLKGPNNHTGDICVSAATGSGKTLSYVLPLVTELEQIPAPRLRGLIVVPTRELVKQAR 342
Query: 119 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQS 178
A C++C GL ++ + ++ + + + V + + G
Sbjct: 343 EA-CEFCTAGT-GLRVGSAVGNVAIKDEQRSLMRIEHVYSPESVESRRKAELTGEEWADF 400
Query: 179 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 238
S+ D IS + G + E VDIL+ TPGRL+DHI T+GFTL+HL
Sbjct: 401 SLQDYISNTTDLGETLPGYIHRGEP-------NVDILICTPGRLVDHIRYTKGFTLKHLQ 453
Query: 239 YLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 297
+LV+DE DRLL E++Q W+ V+Q L F + FL SL+T
Sbjct: 454 WLVIDEADRLLNESFQEWVDVVMQSLDARKAYGAFGPSGRFLADLGMSLQT--------- 504
Query: 298 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG------------------ETR 339
K+ PR K+VLSAT+T+D +KL L L +P + G + R
Sbjct: 505 -KE---PR--KVVLSATMTKDVSKLNSLRLTNPRLVVVGGSDQTTTADDESGVVVHADER 558
Query: 340 YKLPERLESYKL-ICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 384
+ LP L Y + + + + KPLYL+ LL L E K V SS + T
Sbjct: 559 FTLPTTLREYSIAVGDGEHKPLYLLRLL--LSEMKLDV-PSSTKRT 601
Score = 225 (84.3 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 48/122 (39%), Positives = 71/122 (58%)
Query: 375 IVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433
++FT S ES RL LL + I + S KTL A+R+GKI +++++D
Sbjct: 685 LIFTKSSESASRLSRLLALLNPSISGLIGTIVKSNKSSASRKTLSAYRQGKISIIIATDR 744
Query: 434 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 493
+RG+D++ + +V+NYD PA I TY+HR GRTARAG G +TL+ E + F + K
Sbjct: 745 ASRGLDLQSLTHVINYDVPASITTYVHRVGRTARAGNEGSAWTLVAHREGRWFTNEISKG 804
Query: 494 DN 495
N
Sbjct: 805 SN 806
>FB|FBgn0004556 [details] [associations]
symbol:Dbp73D "Dead box protein 73D" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0005730 GO:GO:0022008 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141 EMBL:M74824
EMBL:AF132173 EMBL:BT010045 PIR:S28762 RefSeq:NP_476833.1
UniGene:Dm.3199 ProteinModelPortal:P26802 SMR:P26802 PaxDb:P26802
PRIDE:P26802 EnsemblMetazoa:FBtr0075347 GeneID:39871
KEGG:dme:Dmel_CG9680 CTD:39871 FlyBase:FBgn0004556
InParanoid:P26802 OMA:CSKTELE OrthoDB:EOG4B8GVH PhylomeDB:P26802
GenomeRNAi:39871 NextBio:815810 Bgee:P26802 GermOnline:CG9680
Uniprot:P26802
Length = 687
Score = 386 (140.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 115/340 (33%), Positives = 174/340 (51%)
Query: 183 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 242
E+ L K+ KLE E + S DI+V TPGRL+DH++AT+GF L+ L +LV+
Sbjct: 245 EVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVI 304
Query: 243 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST-----FLPSAFGSL--KTIRRCGVE 295
DE DR++ +Q WL + + + + L ++FG K + +
Sbjct: 305 DEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLS 364
Query: 296 RGFKDKPYPRLVKMVLSAT-LTQDPNKLAQLDLHHPLFLTT-GET--RYKLPERLESYKL 351
+ + RL + L AT LT K A + LT G+ RY P L
Sbjct: 365 QDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYC 424
Query: 352 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQ 410
+ E +LKPL + AL++ ++ + FT+S + RL +L F + K+ E SG
Sbjct: 425 VTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSA 484
Query: 411 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 470
VR++ L+ F GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+
Sbjct: 485 KVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGR 544
Query: 471 LGRCFTLLHKDEVKRFKKLLQKADND-SCPIHSIPSSLIE 509
G T+L + ++ FKK+L A+ IH P I+
Sbjct: 545 KGTAVTVLTEQDMTLFKKILSDANKGLGEEIHVSPDIEIQ 584
Score = 207 (77.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 63/141 (44%), Positives = 82/141 (58%)
Query: 4 AKKKSMPV-LP-WMRSPVDV---SLF--EDCP----LDHLPCLDPRLKVALQNMGISSLF 52
AKKK + + LP W+ P + SL E+ P +D L L+ AL+ M I LF
Sbjct: 102 AKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLF 161
Query: 53 PVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALV 106
PVQ V W + P F RD+C+++PTGSGKTL++A+PIVQ LS R V C +RALV
Sbjct: 162 PVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQR-VDCKVRALV 220
Query: 107 VLPTRDLALQVNSARCKYCCK 127
VLP +LALQV + C K
Sbjct: 221 VLPVAELALQVYRVISELCSK 241
>DICTYBASE|DDB_G0293740 [details] [associations]
symbol:ddx51 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293740 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000218
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 OMA:HIDQTPG RefSeq:XP_629093.1
ProteinModelPortal:Q54BD6 EnsemblProtists:DDB0234210 GeneID:8629386
KEGG:ddi:DDB_G0293740 Uniprot:Q54BD6
Length = 563
Score = 374 (136.7 bits), Expect = 5.7e-47, Sum P(2) = 5.7e-47
Identities = 88/231 (38%), Positives = 138/231 (59%)
Query: 305 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLY 361
+LVK++LSAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL
Sbjct: 248 KLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLV 307
Query: 362 LVALL-QSL------GE--EKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQR 409
L+ ++ +SL GE +K I FT SV+ THRL TLL G+ L+ +EYS
Sbjct: 308 LLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYSSSLS 367
Query: 410 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 469
R+ L F+ +I +L+ SD M+RGMD++ ++ V+NY+ P I Y+HR GRTARAG
Sbjct: 368 TVERADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAG 427
Query: 470 QLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP--SSLIESLRPVYKSG 518
G +T++ K E+K + +++KA+ S +H + ++ E + YK G
Sbjct: 428 NFGVSYTIVDKSEIKYYISMMKKAER-SQTLHCLKWKPNVYEKFQSSYKLG 477
Score = 284 (105.0 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 80/226 (35%), Positives = 125/226 (55%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
QV+ F +I L V L++G E LIK Y E L E S VDI
Sbjct: 101 QVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHS------YG-EHALYE--SLVDI 150
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE-NRFS 273
+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL V+ T ++ N+
Sbjct: 151 IVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLNQQQ 210
Query: 274 DASTFLPSAFGSLKTIRRC-GVERGFKDKPYP-----RLVKMVLSATLTQDPNKLAQLDL 327
+ ++ G ++ + ++ + +LVK++LSAT+T +P+K++ L L
Sbjct: 211 EEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLLSATMTYNPSKISLLQL 270
Query: 328 HHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVALL-QSL 369
+ PLF TT +T+ Y +P L+ +I KPL L+ ++ +SL
Sbjct: 271 NAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESL 316
Score = 160 (61.4 bits), Expect = 5.7e-47, Sum P(2) = 5.7e-47
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L+ I +LFPVQ QE + P + D+C+ +PTGSGKTL+YA+P+VQ + R V
Sbjct: 30 LKEQSIINLFPVQ----QEIV-PFINRTEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVV 84
Query: 100 RCLRALVVLPTRDLALQV 117
R +R V++PT DL +QV
Sbjct: 85 RRVRVAVIVPTHDLVIQV 102
>POMBASE|SPCC285.03 [details] [associations]
symbol:SPCC285.03 "ATP-dependent RNA helicase Dbp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC285.03 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 EMBL:D89259 PIR:T41249 PIR:T43184
RefSeq:NP_588332.1 ProteinModelPortal:Q76PD3
EnsemblFungi:SPCC285.03.1 GeneID:2538809 KEGG:spo:SPCC285.03
HOGENOM:HOG000203294 OMA:HIDQTPG OrthoDB:EOG490BK3 NextBio:20799991
Uniprot:Q76PD3
Length = 604
Score = 349 (127.9 bits), Expect = 4.2e-44, Sum P(2) = 4.2e-44
Identities = 95/312 (30%), Positives = 153/312 (49%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL-QLTR 265
E + +D+LV+TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ +++
Sbjct: 256 ENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISH 315
Query: 266 S---DNENRFSD-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 317
N++ D + TFLP L +++ R + S L
Sbjct: 316 PKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHN 375
Query: 318 DPNKLAQ---LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 374
L Q +++ + + +P L+ Y + S+ KP+ L L+ S
Sbjct: 376 PRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNI 434
Query: 375 IVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 431
+ F S E+ HRL L++ ++ + R K + F G + +LV S
Sbjct: 435 LCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCS 494
Query: 432 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491
D M RG+DV NV+NYD P +++Y+HR GRTARAG+ G +TL+ E F KL++
Sbjct: 495 DLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVK 554
Query: 492 KADNDSCPIHSI 503
+ + PI I
Sbjct: 555 QLRR-TLPIKRI 565
Score = 175 (66.7 bits), Expect = 4.2e-44, Sum P(2) = 4.2e-44
Identities = 47/119 (39%), Positives = 65/119 (54%)
Query: 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI- 63
K VLP W+ P+ V L + +L LQ I+ F VQ AV +
Sbjct: 104 KNITSVLPKWLAEPITVDPNTTVEFSSLN-ISSKLVERLQKQNITRGFAVQAAVLPLLLQ 162
Query: 64 ----GPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
GP + D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV
Sbjct: 163 DGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQV 221
>UNIPROTKB|G4N9X9 [details] [associations]
symbol:MGG_03229 "ATP-dependent RNA helicase dbp6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001234
GO:GO:0008026 KO:K14807 RefSeq:XP_003716750.1
EnsemblFungi:MGG_03229T0 GeneID:2676463 KEGG:mgr:MGG_03229
Uniprot:G4N9X9
Length = 896
Score = 227 (85.0 bits), Expect = 9.0e-42, Sum P(3) = 9.0e-42
Identities = 46/117 (39%), Positives = 70/117 (59%)
Query: 372 EKCIVFTSSVESTHRLCTLLNHFGELRIK--IKEYSGLQRQSVRSKTLKAFREGKIQVLV 429
+ ++FT S ES RL LL ++ I + R S R K + ++ GK+++LV
Sbjct: 705 DSVLIFTKSNESALRLSRLLEIIAPRQVASCIGTLTSTTRTSERKKVINQYKSGKLRILV 764
Query: 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+SD + RG+D+ +++VVNYD P ++TY+HR GRTARAG+ GR +T K E F
Sbjct: 765 ASDLVARGLDLPNLDHVVNYDMPPSVRTYVHRVGRTARAGRAGRAWTFFTKTEAGWF 821
Score = 184 (69.8 bits), Expect = 9.0e-42, Sum P(3) = 9.0e-42
Identities = 54/169 (31%), Positives = 86/169 (50%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+ L S VDIL+ TPGRL++HI T GF L+++ +LVVDE D+LL ++YQ WL V++
Sbjct: 477 VDHLVSKVDILICTPGRLVEHIERTPGFNLDYVRWLVVDEADKLLEQSYQQWLDVVMEKL 536
Query: 265 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK--DKPYPRLVKMVLSATLTQDPNKL 322
S N+ D + G K I + R +K R +M++ ++T P
Sbjct: 537 -STNKPGCRDF--MFQNKSGVRKVILSATMTRNVSLLNKLNLRRPEMIVLESVTAVPTSA 593
Query: 323 A--QLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQS 368
+ D+ + LP +L + + + + + KP+YLV LL S
Sbjct: 594 SGPTTDIAG-VSAEASSYELALPSQLLEFAIKVRDPEQKPMYLVDLLSS 641
Score = 160 (61.4 bits), Expect = 9.0e-42, Sum P(3) = 9.0e-42
Identities = 47/120 (39%), Positives = 64/120 (53%)
Query: 12 LP-WMRSPVDVSL---FEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVWQETIGP 65
LP W++SP+ VS E L P L P + L G F VQ A +
Sbjct: 278 LPLWLQSPLYVSSGTQAEWASLGLRPELGISPEIASQLALKGYPGAFAVQTAAIPRLLPR 337
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125
+ DL I++ TGSGKTL+Y LP+++ +S AV LRAL+V+PTR+L QV+ C C
Sbjct: 338 PDRQGDLVISAATGSGKTLAYVLPMIRDISLGAVTKLRALIVVPTRELVQQVHEV-CNIC 396
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 273 (101.2 bits), Expect = 4.0e-38, Sum P(3) = 4.0e-38
Identities = 65/208 (31%), Positives = 115/208 (55%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT++++ LA + L P+ + P + + I +K + + ALL
Sbjct: 382 MLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALL 441
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
++ ++FT + + HR+ LL G +K+ E G Q+ R ++L+ F++ +I
Sbjct: 442 TRTFQDHVMLFTQTKKQAHRMHILLGLMG---LKVGELHGNLSQTQRLESLRRFKDEQID 498
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D+EGV V+N+ P +K Y+HR GRTARAG++GR +L+ + E K
Sbjct: 499 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKML 558
Query: 487 KKLLQKADNDSCPIHS--IPSSLIESLR 512
K++++KA P+ + IP +I R
Sbjct: 559 KEIVKKA---KFPVKARVIPQEVILKFR 583
Score = 131 (51.2 bits), Expect = 4.0e-38, Sum P(3) = 4.0e-38
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A + GL +D+C + TG+GKT ++ LP+++ L
Sbjct: 211 PLLK-AISTMGFKQPTPIQKAC----VPVGLLGKDICACAATGTGKTAAFMLPVLERLIY 265
Query: 95 SNRAVRCLRALVVLPTRDLALQVNS 119
R + R LV++PTR+L +QV++
Sbjct: 266 KPRETQVTRVLVLVPTRELGIQVHT 290
Score = 123 (48.4 bits), Expect = 4.0e-38, Sum P(3) = 4.0e-38
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
L++ D+L+ATPGRL+DH++ T F L + L++DE DR+L E ++ + ++++
Sbjct: 319 LRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRM 374
Score = 47 (21.6 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 162 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 215
A A VG SV L VG++ + E++K+ K P++V+ + + ++ L
Sbjct: 538 ARAGKVGRSVSL-VGETE-RKMLKEIVKKAKFPVKARVIPQEVILKFRDLIEKL 589
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 265 (98.3 bits), Expect = 4.1e-38, Sum P(3) = 4.1e-38
Identities = 66/207 (31%), Positives = 114/207 (55%)
Query: 309 MVLSATLTQDPNKLAQLDLHHP--LFLTTG-ETRYKLPERLESYKLICESKLKPLYLVAL 365
++ SAT+T++ ++LA + L P +F+ +T KL + + E+ + + + AL
Sbjct: 329 LLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAM-VAAL 387
Query: 366 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425
+ + IVF + + R+ LL G L IK+ + Q R ++L F++ +I
Sbjct: 388 VTRTFQTNTIVFVRTKKDCQRMQILL---GLLGIKVGQMQSSLTQGQRIESLSKFKKAEI 444
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
VLVS+D +RG+D+EGV V+N + P IK YIHR GRTARAG+ GR +L+ +DE K
Sbjct: 445 DVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKL 504
Query: 486 FKKLLQKADNDSCPIHSIPSSLIESLR 512
K+++ + + + ++E+ R
Sbjct: 505 LKEIVNSNADRTLKQRLVAPEVVEAYR 531
Score = 137 (53.3 bits), Expect = 4.1e-38, Sum P(3) = 4.1e-38
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 173 LAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINAT 229
LA+ + ++S I+ LE +C D+ QE L+S D++VATPGRL+DH++ +
Sbjct: 231 LAIQVFQVFRKLSTFIQ---LEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNS 287
Query: 230 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 276
F L ++ LV+DE DR+L EA++ + +++L + + A+
Sbjct: 288 PSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSAT 334
Score = 125 (49.1 bits), Expect = 4.1e-38, Sum P(3) = 4.1e-38
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ A G S P+Q Q I L +D+C + TG+GKT ++ LPI++ +
Sbjct: 155 LSRQILKACSGAGYSDPTPIQ----QACIPVALTGKDICACAATGTGKTAAFVLPILERM 210
Query: 95 SNR--AVRCLRALVVLPTRDLALQV 117
R C R LV++PTR+LA+QV
Sbjct: 211 IYRPKGASCTRVLVLVPTRELAIQV 235
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 262 (97.3 bits), Expect = 2.8e-37, Sum P(4) = 2.8e-37
Identities = 62/190 (32%), Positives = 104/190 (54%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR + L SAT+T+ KL + L P+ + ++Y ++L+ + + SK K
Sbjct: 248 KVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVS-SKYATVDKLQQFYIFIPSKYKD 306
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV++L L +VF + +T R+ LL + G I + G Q+ R L
Sbjct: 307 CYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLH---GQMSQNKRLGALNK 363
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ VL+++D +RG+D+ V+ V+N+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 364 FKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 423
Query: 480 KDEVKRFKKL 489
+ +V+ F+++
Sbjct: 424 QYDVELFQRI 433
Score = 128 (50.1 bits), Expect = 2.8e-37, Sum P(4) = 2.8e-37
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN-RF 272
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L +++ + +L++ D F
Sbjct: 200 VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF 259
Query: 273 SDAST 277
S T
Sbjct: 260 SATMT 264
Score = 105 (42.0 bits), Expect = 2.8e-37, Sum P(4) = 2.8e-37
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++A+P++Q+L A R L LV+ PTR+
Sbjct: 102 PTKIQI--EAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQR-LHTLVLTPTRE 158
Query: 113 LALQV 117
LA Q+
Sbjct: 159 LAFQI 163
Score = 47 (21.6 bits), Expect = 2.8e-37, Sum P(4) = 2.8e-37
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 162 QIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKP 198
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 261 (96.9 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 63/208 (30%), Positives = 113/208 (54%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 365 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 424
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++FT + + HR+ LL G L +++ E G Q+ R + L+ F++ +I
Sbjct: 425 MRTFTDHVMLFTQTKKQAHRMHILL---GLLGLQVGELHGNLSQTQRLEALRRFKDEQID 481
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D+EGV V+N+ P +K Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 482 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKML 541
Query: 487 KKLLQKADNDSCPIHS--IPSSLIESLR 512
K++++ A P+ + +P +I R
Sbjct: 542 KEIVKAA---KAPVKARILPQDVILKFR 566
Score = 138 (53.6 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 41/106 (38%), Positives = 58/106 (54%)
Query: 17 SPVDVSL-FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN 75
S D SL F+D L P LK A+ MG P+Q A I GL +D+C
Sbjct: 178 SEYDKSLSFQDMNLSR-----PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICAC 227
Query: 76 SPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVNS 119
+ TG+GKT ++ALP+++ L R R LV++PTR+L +QV+S
Sbjct: 228 AATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHS 273
Score = 120 (47.3 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 302 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 357
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 263 (97.6 bits), Expect = 7.3e-37, Sum P(3) = 7.3e-37
Identities = 64/208 (30%), Positives = 112/208 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 458
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 459 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ +DE K
Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKML 575
Query: 487 KKLLQKADNDSCPIHS--IPSSLIESLR 512
K++++ A P+ + +P +I R
Sbjct: 576 KEIVKAA---KAPVKARILPQDVILKFR 600
Score = 134 (52.2 bits), Expect = 7.3e-37, Sum P(3) = 7.3e-37
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 228 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 282
Query: 95 SNRAVRCLRALVVLPTRDLALQVNS 119
R R LV++PTR+L +QV+S
Sbjct: 283 KPRQAPVTRVLVLVPTRELGIQVHS 307
Score = 120 (47.3 bits), Expect = 7.3e-37, Sum P(3) = 7.3e-37
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 336 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 391
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 254 (94.5 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 65/196 (33%), Positives = 99/196 (50%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353
+++ K P+ R ++ SAT+T KL + LH P+ + +++ + L L
Sbjct: 210 IDKILKIIPHERRT-LLFSATMTSKVEKLQRASLHQPVRVAVS-SKFSTVDTLIQRYLFF 267
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
K K YLV L+ L I+F +V T RL LL G I + G QS R
Sbjct: 268 PFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLH---GQLSQSNR 324
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
L F+ G LV++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+
Sbjct: 325 LGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGK 384
Query: 474 CFTLLHKDEVKRFKKL 489
L+ + +++ F ++
Sbjct: 385 SIALVTQYDLEPFLRI 400
Score = 130 (50.8 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
+LV TPGRLMDH+ T+GF+L++L YL++DE DRLL + + +L++
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKI 216
Score = 116 (45.9 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q QE I L +RD+ + TGSGKT ++ALP++Q L N
Sbjct: 60 ACEKLGFKTPTPIQ----QEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF 115
Query: 102 LRALVVLPTRDLALQVN 118
A+V+ PTR+LA Q++
Sbjct: 116 F-AVVLAPTRELAYQIS 131
Score = 46 (21.3 bits), Expect = 6.0e-28, Sum P(3) = 6.0e-28
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 210
Q+ + F AI ++G+ + VG + + L K+P + +C P ++ L++
Sbjct: 129 QISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVL--VC-TPGRLMDHLEN 181
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 260 (96.6 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 63/208 (30%), Positives = 112/208 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 427
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 428 MRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 544
Query: 487 KKLLQKADNDSCPIHS--IPSSLIESLR 512
K++++ A P+ + +P +I R
Sbjct: 545 KEIVKAA---KAPVKARILPQDVILKFR 569
Score = 134 (52.2 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 197 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 251
Query: 95 SNRAVRCLRALVVLPTRDLALQVNS 119
R R LV++PTR+L +QV+S
Sbjct: 252 KPRQAPVTRVLVLVPTRELGIQVHS 276
Score = 120 (47.3 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 260 (96.6 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 63/208 (30%), Positives = 112/208 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 427
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 428 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 544
Query: 487 KKLLQKADNDSCPIHS--IPSSLIESLR 512
K++++ A P+ + +P +I R
Sbjct: 545 KEIVKAA---KAPVKARILPQDVILKFR 569
Score = 132 (51.5 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 197 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 251
Query: 95 SNRAVRCLRALVVLPTRDLALQVNS 119
R R LV++PTR+L +QV+S
Sbjct: 252 KPRQSPVTRVLVLVPTRELGIQVHS 276
Score = 120 (47.3 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 260 (96.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 63/208 (30%), Positives = 112/208 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 389 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 448
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 449 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 505
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 506 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 565
Query: 487 KKLLQKADNDSCPIHS--IPSSLIESLR 512
K++++ A P+ + +P +I R
Sbjct: 566 KEIVKAA---KAPVKARILPQDVILKFR 590
Score = 132 (51.5 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 218 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 272
Query: 95 SNRAVRCLRALVVLPTRDLALQVNS 119
R R LV++PTR+L +QV+S
Sbjct: 273 KPRQSPVTRVLVLVPTRELGIQVHS 297
Score = 120 (47.3 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 326 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 381
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 256 (95.2 bits), Expect = 4.6e-36, Sum P(3) = 4.6e-36
Identities = 62/188 (32%), Positives = 105/188 (55%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKL-KPLYLVAL 365
M+ SAT+T + L +L L+ P+ F+ +T KL + E ++ + +L +P L+ L
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQ-EFVRVRPQRELLRPAMLIYL 498
Query: 366 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425
+ L + I+F S H++ + FG L + E G Q R + L+ FR+GK
Sbjct: 499 CKELFHRRTIIFFRSKAFAHKMRVI---FGLLSLNATEIHGSLSQEQRVRALEDFRDGKC 555
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
L+++D +RG+D++G+ V+NY+ PA + Y+HR GRTARAG+ GR TL + + K
Sbjct: 556 NYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKV 615
Query: 486 FKKLLQKA 493
K + + +
Sbjct: 616 LKGVFKNS 623
Score = 135 (52.6 bits), Expect = 4.6e-36, Sum P(3) = 4.6e-36
Identities = 24/57 (42%), Positives = 41/57 (71%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
QEL+ DI++ATPGR +DH+ ++GFT+E++ +V+DE DR+L + + L ++Q
Sbjct: 375 QELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQ 431
Score = 118 (46.6 bits), Expect = 4.6e-36, Sum P(3) = 4.6e-36
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLR 103
G+S+L F V + +TI L +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 273 GLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTR 332
Query: 104 ALVVLPTRDLALQVNSARCK 123
L++ PTR+LA+Q +S K
Sbjct: 333 VLILCPTRELAMQCHSVATK 352
Score = 43 (20.2 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q V IA + V L +G S+ + EL KRP +
Sbjct: 345 QCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDI 383
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 254 (94.5 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 62/206 (30%), Positives = 108/206 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T++ LA + L +P + P + + I ++ + + ALL
Sbjct: 361 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 420
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 421 TRTFPDHVMLFTQTKKQAHRMHILLGLMG---LRVGELHGNLSQAQRLEALRRFKDEQID 477
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D+EGV V+N+ P K Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 478 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 537
Query: 487 KKLLQKADNDSCPIHSIPSSLIESLR 512
K+++ KA +P +I R
Sbjct: 538 KEIV-KAAKTPVKARILPQDVILKFR 562
Score = 127 (49.8 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 39/107 (36%), Positives = 57/107 (53%)
Query: 22 SLFEDCPL--DHLPCLD-----PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCI 74
S FED D+L D P LK A+ +G P+Q A I GL +D+C
Sbjct: 168 SFFEDASEYDDNLSFQDMNLSRPLLK-AITALGFKQPTPIQKAC----IPVGLLGKDICA 222
Query: 75 NSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVNS 119
+ TG+GKT ++ LP+++ L R R LV++PTR+L +QV+S
Sbjct: 223 CAATGTGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHS 269
Score = 121 (47.7 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL-TRS 266
L+S DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + +++L +R
Sbjct: 298 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 357
Query: 267 DNENRFSDAST 277
FS T
Sbjct: 358 RQTMLFSATMT 368
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 237 (88.5 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 59/175 (33%), Positives = 92/175 (52%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 369
+ SAT++ L + L +P+ ++ ++Y+ L+S + K K LYLV LL
Sbjct: 225 LFSATMSTKVESLQRASLSNPVRVSVS-SKYQTVSTLQSSYICIPHKHKNLYLVYLLNEF 283
Query: 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429
+ I+FT++V T R+ +L G I + G QS R L FR +LV
Sbjct: 284 AGQSAIIFTTTVHETQRVAFMLRALGFGAIPLH---GQLSQSARLGALGKFRSRSRDILV 340
Query: 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
++D RG+D+ V+ V N+D P KTYIHR GRTARAG+ G + + + +V+
Sbjct: 341 ATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVE 395
Score = 130 (50.8 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRF 272
I+VATPGRL+DH+ T+GF+L +L YL +DE DRLL + L +++ L R+ + F
Sbjct: 167 IIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLF 226
Query: 273 S 273
S
Sbjct: 227 S 227
Score = 121 (47.7 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A +NMG + P+Q + I L RD+ + TGSGKT ++ALP++Q L A +
Sbjct: 60 ACENMGYKAPTPIQ----SQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALME-APQT 114
Query: 102 LRALVVLPTRDLALQVNSA 120
L LV+ PTR+LA Q++ A
Sbjct: 115 LFGLVLAPTRELAYQISQA 133
Score = 42 (19.8 bits), Expect = 6.5e-26, Sum P(3) = 6.5e-26
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 210
Q+ F + +G+ + VG + + L K+P + I P +L L++
Sbjct: 129 QISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHI---IVATPGRLLDHLEN 181
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 248 (92.4 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 66/219 (30%), Positives = 110/219 (50%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353
++R K P + SAT+T +KL + L +P+ +Y+ + L ++
Sbjct: 245 LDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVV 303
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
LK YL+ LL + I+FT + + RL L N L G Q+ R
Sbjct: 304 PGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQR 360
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
+L F+ GK +LV++D RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+
Sbjct: 361 MGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGK 420
Query: 474 CFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 512
+L+ + +++ ++ ++ P S+ ++I +LR
Sbjct: 421 SISLVSQYDLELILRI-EEVLGKKLPKESVDKNIILTLR 458
Score = 136 (52.9 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 203 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
D ++L I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILK 250
Query: 263 LTRSDNENRFSDAST 277
+ + + ++T
Sbjct: 251 IIPTQERTTYLFSAT 265
Score = 100 (40.3 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
+ A ++ PTR+LA Q+
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQI 165
Score = 54 (24.1 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+K+ F ++ +G+ VG ++ D+ +L+++P +
Sbjct: 164 QIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHI 202
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 254 (94.5 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 62/206 (30%), Positives = 108/206 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T++ LA + L +P + P + + I ++ + + ALL
Sbjct: 362 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 421
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 422 TRTFPDHVMLFTQTKKQAHRMHILLGLMG---LRVGELHGNLSQAQRLEALRRFKDEQID 478
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D+EGV V+N+ P K Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 479 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 538
Query: 487 KKLLQKADNDSCPIHSIPSSLIESLR 512
K+++ KA +P +I R
Sbjct: 539 KEIV-KAAKTPVKARILPQDVILKFR 563
Score = 121 (47.7 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL-TRS 266
L+S DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + +++L +R
Sbjct: 299 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 358
Query: 267 DNENRFSDAST 277
FS T
Sbjct: 359 RQTMLFSATMT 369
Score = 118 (46.6 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 22 SLFEDCPL--DHLPCLD-----PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCI 74
S FED D+L D P LK A+ +G P+Q A I GL +D+C
Sbjct: 168 SFFEDASEYDDNLSFQDMNLSRPLLK-AITALGFKQPTPIQKAC----IPVGLLGKDICA 222
Query: 75 NSPTGS-GKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVNS 119
+ TG+ GKT ++ LP+++ L R R LV++PTR+L +QV+S
Sbjct: 223 CAATGTVGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHS 270
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 254 (94.5 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 61/190 (32%), Positives = 102/190 (53%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR + L SAT+T+ KL + L P+ + +Y+ E+L+ L K K
Sbjct: 230 KVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN-KYQTVEQLQQSYLFIPVKYKD 288
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
+YLV +L L ++F S+ +T + +L G I + G Q+ R L
Sbjct: 289 VYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLH---GQMSQNKRLAALNK 345
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ +L+S+D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ TL+
Sbjct: 346 FKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVS 405
Query: 480 KDEVKRFKKL 489
+ +++ ++++
Sbjct: 406 QYDIELYQRI 415
Score = 128 (50.1 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 204 VLQELQSAVD--ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
V Q LQ A I++ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L
Sbjct: 170 VAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKIL 229
Query: 262 Q-LTRSDNENRFSDAST 277
+ L R FS T
Sbjct: 230 KVLPRERRTFLFSATMT 246
Score = 98 (39.6 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 145
Score = 46 (21.3 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+ +G+ + VG + + +L K+P +
Sbjct: 144 QIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHI 182
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 253 (94.1 bits), Expect = 9.6e-34, Sum P(3) = 9.6e-34
Identities = 66/207 (31%), Positives = 109/207 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPL--FLTTGE-TRYKLPERLESYKLICESKLKPLYLVAL 365
M+ SAT+++ LA + L P+ F+ + + L + + E +P+ L +L
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPI-LASL 397
Query: 366 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425
+ + C+VF + + HRL LL G L ++ E G Q R ++LK F+E +I
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILL---GLLGVRAGELHGNLTQQQRLESLKKFKEEQI 454
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
VL+++D RG+D+ GV V+N+ P + YIHR GRTARAG+ G +L + E K
Sbjct: 455 DVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKI 514
Query: 486 FKKLLQKADNDSCPIHSIPSSLIESLR 512
K +++ A++ + IP +IE R
Sbjct: 515 VKDIIKNAES-TIKNRIIPPEIIEKYR 540
Score = 125 (49.1 bits), Expect = 9.6e-34, Sum P(3) = 9.6e-34
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 186 ELIKRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 242
+L + ++ G+ DV QE L+ DI++ATPGRL+DHI T FTL+ + L++
Sbjct: 251 QLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLIL 310
Query: 243 DETDRLLREAYQAWLPTVL 261
DE DR+L E + + ++
Sbjct: 311 DEADRMLDEYFAEQMKEII 329
Score = 110 (43.8 bits), Expect = 9.6e-34, Sum P(3) = 9.6e-34
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRAL 105
++P + TI L RD+C + TG+GKT +Y LP ++ L +N+A+ R L
Sbjct: 178 IYPTPIQA--STIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAIT--RVL 233
Query: 106 VVLPTRDLALQVNSARCKYC 125
V++PTR+L QV + C
Sbjct: 234 VLVPTRELGAQVYQVTKQLC 253
Score = 37 (18.1 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
QV V + + VGLA+G + + + L + P +
Sbjct: 244 QVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDI 282
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 235 (87.8 bits), Expect = 9.7e-34, Sum P(3) = 9.7e-34
Identities = 55/180 (30%), Positives = 93/180 (51%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 369
+ SAT+T KL + LH+P+ + ++Y+ + L ++ K L+ LL
Sbjct: 302 LFSATMTNKIEKLQRASLHNPVRVAVS-SKYQTADNLVQSMMLVNDGYKNTILIHLLNEF 360
Query: 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429
+ IVFT +V R L G + + G QS R +L F+ + +LV
Sbjct: 361 MGKSIIVFTRTVAHAQRTALLARILGFNAVPLH---GQLSQSQRLGSLNKFKSNQANILV 417
Query: 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 489
++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+ +L+ + +++ + ++
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477
Score = 139 (54.0 bits), Expect = 9.7e-34, Sum P(3) = 9.7e-34
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 200 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259
D D ++L ++VATPGR+MDH+ T+GF+L++L YLV+DE DRLL + L
Sbjct: 230 DMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDK 289
Query: 260 VLQL 263
+L++
Sbjct: 290 ILKV 293
Score = 107 (42.7 bits), Expect = 9.7e-34, Sum P(3) = 9.7e-34
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L ++++M + P+Q E I L +D+ + TGSGKT ++A+PI+Q+L
Sbjct: 130 LVPDLLESIESMKFTKPTPIQ----SEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL 185
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
+ A + ALV+ PTR+L Q+
Sbjct: 186 WH-AQQPYFALVLAPTRELTFQI 207
Score = 67 (28.6 bits), Expect = 2.8e-26, Sum P(3) = 2.8e-26
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209
Q+KD F A+ ++GL VG + D+ +L+++P + I P ++ L+
Sbjct: 206 QIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHV---IVATPGRIMDHLE 257
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 233 (87.1 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 61/201 (30%), Positives = 102/201 (50%)
Query: 294 VERGFKDK--------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 345
+E GF+D+ P + ++ SAT+ L QL L P+ + + +
Sbjct: 288 LEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKL 347
Query: 346 LESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 404
L+ + I + +LKP L LL+ + + +VF + E+ HRL +L G L +K+ E
Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVL---GLLGLKVSEL 403
Query: 405 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 464
G Q R + +K F+ ++ VL+ +D RG+D+ + V+NYD P + Y+HR GR
Sbjct: 404 HGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGR 463
Query: 465 TARAGQLGRCFTLLHKDEVKR 485
TARAG+ G T + + +R
Sbjct: 464 TARAGRDGTSITFVGESSQER 484
Score = 135 (52.6 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
++L++ DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
Score = 111 (44.1 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +
Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Query: 106 VVLPTRDLALQV 117
++ PTR+LALQV
Sbjct: 204 ILTPTRELALQV 215
Score = 44 (20.5 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 169 LSVGLAVGQSSIADEISELIKRPKL 193
L++GLAVG ++ + +L RP +
Sbjct: 229 LNIGLAVGGLNLRQQEEQLKTRPDI 253
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 233 (87.1 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 61/201 (30%), Positives = 102/201 (50%)
Query: 294 VERGFKDK--------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 345
+E GF+D+ P + ++ SAT+ L QL L P+ + + +
Sbjct: 288 LEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKL 347
Query: 346 LESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 404
L+ + I + +LKP L LL+ + + +VF + E+ HRL +L G L +K+ E
Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVL---GLLGLKVSEL 403
Query: 405 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 464
G Q R + +K F+ ++ VL+ +D RG+D+ + V+NYD P + Y+HR GR
Sbjct: 404 HGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGR 463
Query: 465 TARAGQLGRCFTLLHKDEVKR 485
TARAG+ G T + + +R
Sbjct: 464 TARAGRDGTSITFVGESSQER 484
Score = 135 (52.6 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
++L++ DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
Score = 111 (44.1 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +
Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Query: 106 VVLPTRDLALQV 117
++ PTR+LALQV
Sbjct: 204 ILTPTRELALQV 215
Score = 44 (20.5 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 169 LSVGLAVGQSSIADEISELIKRPKL 193
L++GLAVG ++ + +L RP +
Sbjct: 229 LNIGLAVGGLNLRQQEEQLKTRPDI 253
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 226 (84.6 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 66/209 (31%), Positives = 107/209 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 366
M+ SAT T+ + +A++ L++ P+++ + R E LE ++C S+ + L L L
Sbjct: 301 MLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYTFL 360
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ +K IVF SS + LLN+ + I + E G Q+Q R+ T F +
Sbjct: 361 KKNLSKKIIVFLSSCNAVKYTAELLNY---IDIPVLELHGRQKQQKRTNTFYEFVNAEKG 417
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVKR 485
+L+ +D RG+D+ V+ ++ YD P K YIHR GRTAR G+ GR L E+
Sbjct: 418 ILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELG- 476
Query: 486 FKKLLQKADNDSCPI--HSIPSSLIESLR 512
F K L+ A P+ + P S I +++
Sbjct: 477 FLKYLKLA---KVPLNEYEFPKSKIANVQ 502
Score = 134 (52.2 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G PE+ + L+ V++LVATPGRL+DH+ T+GF ++L L++DE DR+L ++
Sbjct: 228 GASKKPEE--ERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEE 285
Query: 256 WLPTVLQ 262
+ +++
Sbjct: 286 EMHQIIK 292
Score = 119 (46.9 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
E +LP ++ K +++ MG + P+Q ++I P L +DL + TGSGKTL
Sbjct: 117 ESIEFSNLP-IEENTKKSIEEMGFKKMTPIQA----KSILPLLEGKDLLGAARTGSGKTL 171
Query: 85 SYALPIVQTL--SNRAVRCLRALVVL-PTRDLALQV 117
++ +P ++ L SN R ++++ PTR+LALQ+
Sbjct: 172 AFLIPAIEVLVKSNFKPRNGTGVIIISPTRELALQI 207
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 235 (87.8 bits), Expect = 5.5e-33, Sum P(3) = 5.5e-33
Identities = 60/182 (32%), Positives = 98/182 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 397 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 456
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-KTLKAFREGKI 425
+ ++FT + + HR+ LL G +++ E G Q+ R + L F++ +I
Sbjct: 457 MRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRXLEALWRFKDEQI 513
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +LL K+ VK
Sbjct: 514 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLL-KEIVKA 572
Query: 486 FK 487
K
Sbjct: 573 AK 574
Score = 133 (51.9 bits), Expect = 5.5e-33, Sum P(3) = 5.5e-33
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 221 PLLK-AITVMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 275
Query: 95 SNRAVRCLRALVVLPTRDLALQVNS 119
R R LV++PTR+L +QV+S
Sbjct: 276 KPRQAPVTRVLVLVPTRELGIQVHS 300
Score = 112 (44.5 bits), Expect = 5.5e-33, Sum P(3) = 5.5e-33
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 213 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 339 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 389
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 217 (81.4 bits), Expect = 7.1e-33, Sum P(4) = 7.1e-33
Identities = 55/182 (30%), Positives = 93/182 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKPLYLVALL 366
++ SAT+ L L L P+ + + K +L E ++ LKP L L+
Sbjct: 413 LLFSATMNSKIKSLVSLSLKKPVRIMIDPPK-KAATKLTQEFVRIRKRDHLKPALLFNLI 471
Query: 367 QSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
+ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNL 528
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T + +
Sbjct: 529 EVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQ 588
Query: 484 KR 485
R
Sbjct: 589 DR 590
Score = 135 (52.6 bits), Expect = 7.1e-33, Sum P(4) = 7.1e-33
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
Q L+S DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L
Sbjct: 348 QMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLP 407
Query: 266 SDNENRFSDAS 276
S+ +N A+
Sbjct: 408 SNRQNLLFSAT 418
Score = 117 (46.2 bits), Expect = 7.1e-33, Sum P(4) = 7.1e-33
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 241 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 97 RAVRCL--RALVVLPTRDLALQV 117
+ + R +V+LPTR+LA+QV
Sbjct: 296 KPAKIASTRVIVLLPTRELAIQV 318
Score = 53 (23.7 bits), Expect = 7.1e-33, Sum P(4) = 7.1e-33
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 155 QVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKL 193
QV DV IA V G++ GLAVG ++ + L RP +
Sbjct: 317 QVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 356
>SGD|S000005321 [details] [associations]
symbol:DBP6 "Essential protein involved in ribosome
biogenesis" species:4932 "Saccharomyces cerevisiae" [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0030687
"preribosome, large subunit precursor" evidence=IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0000466
"maturation of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000005321
GO:GO:0005524 GO:GO:0005730 EMBL:BK006947 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513 GO:GO:0000466 KO:K14807
HOGENOM:HOG000203294 OrthoDB:EOG490BK3 EMBL:Z71653 PIR:S63369
RefSeq:NP_014436.1 ProteinModelPortal:P53734 SMR:P53734
IntAct:P53734 MINT:MINT-2731978 STRING:P53734 PaxDb:P53734
PeptideAtlas:P53734 PRIDE:P53734 EnsemblFungi:YNR038W GeneID:855774
KEGG:sce:YNR038W CYGD:YNR038w GeneTree:ENSGT00550000075141
OMA:SSREYVH NextBio:980232 Genevestigator:P53734 GermOnline:YNR038W
Uniprot:P53734
Length = 629
Score = 298 (110.0 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
Identities = 97/345 (28%), Positives = 168/345 (48%)
Query: 185 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 244
S ++ KLE + D L L+ DIL+ TPGRL+DH+N + L++L +L++DE
Sbjct: 287 SLIVSIAKLENSL-KDEHKKLSNLEP--DILITTPGRLVDHLNM-KSINLKNLKFLIIDE 342
Query: 245 TDRLLREAYQAWLPTVLQLTRSDNENRF-SDASTFLPSAFGSLKTIRRCGVERGFKDKPY 303
DRLL +++Q W P ++ ++D + + + SA + T + G+ +K K +
Sbjct: 343 ADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNL-YKPKLF 401
Query: 304 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYL 362
+K + L Q PNKL + +++ P T ++ YK P L Y IC+ P+
Sbjct: 402 ---LKQ--TDKLYQLPNKLNEFNINIP----TAKSVYK-PLIL-LYS-ICQFMAHSPIAA 449
Query: 363 VALLQSLGEEKCIVFTSSVE---STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
L+ E I + ++ + ++L + L + I + ++ K +
Sbjct: 450 KILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVAN 509
Query: 420 F----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 475
F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA +LG +
Sbjct: 510 FSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAY 569
Query: 476 TLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 517
LL + E F L + D D + + +L+ES +Y S
Sbjct: 570 NLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
Score = 131 (51.2 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123
D+ +N+ TGSGKTL+Y++PIVQTL R + LR ++++PT+ L QV + K
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTK 281
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 258 (95.9 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 63/192 (32%), Positives = 103/192 (53%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 369
+ SAT+T KL + L +P+ + ++Y+ + L L K K YL +L L
Sbjct: 298 LFSATMTSKVAKLQRASLVNPVKVQVA-SKYQTVDTLLQQYLFVPFKYKDCYLAYILNEL 356
Query: 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429
I+FTS+ S+ ++ +L + G I I +G Q R +L F++G +LV
Sbjct: 357 AGNLTIIFTSTCASSTKIAMMLRNLGFGAIPI---NGDMDQGKRLASLNKFKQGTKSILV 413
Query: 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 489
++D RG+D+ V+ V+NYD P K Y+HR GRTARAG GR T++ + +V+ ++++
Sbjct: 414 ATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRI 473
Query: 490 --LQKADNDSCP 499
+ K DS P
Sbjct: 474 EFVLKKKLDSFP 485
Score = 112 (44.5 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 162 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 221
A+AP L+ +A ++I I +K L GI D L ++V +PGR
Sbjct: 192 ALAPTRELAYQIADQFNAIGSTIG--VKTCVLVGGI--DSMSQSLALAKKPHVVVGSPGR 247
Query: 222 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 277
++ H+ T+GF L + Y ++DE DRL ++ + +L+ + + N FS T
Sbjct: 248 VLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSATMT 304
Score = 97 (39.2 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 30/102 (29%), Positives = 55/102 (53%)
Query: 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN 75
+S + +E+ + L + P++ A +G + P ++ +E+I L RD+
Sbjct: 108 KSEEEEKKYENVTFESLG-VHPQIIDACNKLGFNK--PKEIQ--RESIPWALKGRDIIGL 162
Query: 76 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ TGSGKT ++ +P++Q L A + L L + PTR+LA Q+
Sbjct: 163 AQTGSGKTAAFVIPVLQKLLE-APQGLFCLALAPTRELAYQI 203
Score = 54 (24.1 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209
Q+ D F AI +G+ + VG + L K+P + G P VL L+
Sbjct: 202 QIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVG---SPGRVLHHLE 253
Score = 43 (20.2 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 371 EEKCIVFTSSVESTHRLCT 389
EE ++F V+ HR+ T
Sbjct: 488 EETVLIFLERVQEAHRIAT 506
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 214 (80.4 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
Identities = 63/207 (30%), Positives = 103/207 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 366
M+ SAT T LA++ L PLF+ ET + LE ++C+S + L L + L
Sbjct: 225 MLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFL 284
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++K IVF SS S LLN+ + + + E G Q+Q R+ T F +
Sbjct: 285 KRNQKKKIIVFLSSCNSVKYYAELLNY---IDLPVLELHGKQKQQKRTNTFFEFCNAERG 341
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEVKR 485
+L+ +D RG+D+ V+ ++ +D P + YIHR GRTAR + G+ L +E+
Sbjct: 342 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELG- 400
Query: 486 FKKLLQKADNDSCPIHSIPSSLIESLR 512
F + L KA + P + I +++
Sbjct: 401 FLRYL-KASKVPLNEYEFPENKIANVQ 426
Score = 134 (52.2 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
++L V++L+ATPGRL+DH+ T+GF ++L L++DE DR+L ++ + ++++
Sbjct: 159 EKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKIL- 217
Query: 266 SDNENRFS 273
NE+R S
Sbjct: 218 -PNEDRQS 224
Score = 119 (46.9 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
Identities = 38/119 (31%), Positives = 59/119 (49%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
E++ K P V FE+ L P LK A++ MG +++ VQ
Sbjct: 22 EKSTSKQNNAAPEGEQTTCVEKFEELKLSQ-----PTLK-AIEKMGFTTMTSVQA----R 71
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQV 117
TI P L RD+ + TGSGKTL++ +P ++ L + + +V+ PTR+LALQ+
Sbjct: 72 TIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQI 130
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 239 (89.2 bits), Expect = 7.8e-32, Sum P(4) = 7.8e-32
Identities = 57/179 (31%), Positives = 97/179 (54%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATLT +L L + P F T + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQAT-VRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 369 LGE--EKC--IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+ E C I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALARFKSST 298
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 112 (44.5 bits), Expect = 7.8e-32, Sum P(4) = 7.8e-32
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVL 261
EL +++ATPGRL DH+ ++ F ++ + +LV+DE DRLL + + A L T+L
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETIL 173
Score = 99 (39.9 bits), Expect = 7.8e-32, Sum P(4) = 7.8e-32
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQV 117
LV+ PTR+LA Q+
Sbjct: 72 F-CLVLTPTRELAYQI 86
Score = 42 (19.8 bits), Expect = 7.8e-32, Sum P(4) = 7.8e-32
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F + +GL + VG + + EL ++P
Sbjct: 85 QIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKP 121
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 222 (83.2 bits), Expect = 8.9e-32, Sum P(3) = 8.9e-32
Identities = 69/211 (32%), Positives = 108/211 (51%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLE 347
+ER F P+ R + SAT+ + ++ L P + T ET + +
Sbjct: 168 IERIFSLTPFTRQT-LFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFK 226
Query: 348 SYKLICESKLKPLYLVALLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEY 404
+ E+ K L AL+ + GE KC I+F + + L +G I +
Sbjct: 227 GSRRDREASEKRAVLRALIDAEGE-KCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPI--H 283
Query: 405 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 464
L QS R++TL FREGK+++LV+SD RG+DV V++V N+D P + + Y+HR GR
Sbjct: 284 GDLD-QSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGR 342
Query: 465 TARAGQLGRCFTL-LHKDE--VKRFKKLLQK 492
T RAG+ G+ TL + +DE + +KL+QK
Sbjct: 343 TGRAGRDGKAITLCIPRDEKALDAIEKLIQK 373
Score = 124 (48.7 bits), Expect = 8.9e-32, Sum P(3) = 8.9e-32
Identities = 33/85 (38%), Positives = 50/85 (58%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LNPKVLKAIEEAGYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 95 SN-RA-VRCLRALVVLPTRDLALQV 117
+ RA R R+LV+ PTR+LA QV
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQV 89
Score = 114 (45.2 bits), Expect = 8.9e-32, Sum P(3) = 8.9e-32
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 182 DEISELIKRPK--LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLC 238
D ++ +K K L G+ + +D L + VD+L+ATPGRL+DH RG L +
Sbjct: 94 DTYTKHLKLTKALLIGGVSFKEQDAL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQ 149
Query: 239 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 280
+VVDE DR+L + + + LT + F A T P
Sbjct: 150 IMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA-TMAP 190
Score = 42 (19.8 bits), Expect = 5.9e-12, Sum P(3) = 5.9e-12
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 480 KDEVKRFKKLLQKADNDSCPIH 501
K +V K LQK D+ PIH
Sbjct: 262 KTDVDIVAKSLQKYGYDAAPIH 283
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 221 (82.9 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 63/188 (33%), Positives = 95/188 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 366
M+ SAT T LA++ L PL++ + + E LE +ICE+ + L L + L
Sbjct: 311 MLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFL 370
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++K IVF SS LLN+ + + + + G Q+Q R+ T F K
Sbjct: 371 KRNLKKKIIVFFSSCNCVKYHAELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 427
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR-AGQLGRCFTLLHKDEVKR 485
VL+ +D RG+D+ V+ ++ +D P + YIHR GRTAR A GR L EV
Sbjct: 428 VLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVG- 486
Query: 486 FKKLLQKA 493
F K L++A
Sbjct: 487 FLKYLKEA 494
Score = 131 (51.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
++L V++L+ATPGRL+DH+ T GF ++L LV+DE DR+L ++ + ++++
Sbjct: 245 EKLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL- 303
Query: 266 SDNENR 271
NE+R
Sbjct: 304 -PNEDR 308
Score = 113 (44.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 43/122 (35%), Positives = 65/122 (53%)
Query: 2 EEAKKKSMPVLPWMRSPVD-VSLFEDCPLDHLPCLDPRLKVALQNM-GISSL-FPVQVAV 58
E++ K ++P LP VD VSL + P D P L ++ + + GI + F +
Sbjct: 102 EDSGKANVPDLP----SVDAVSLPQ--P-DGGPKKFTELGLSEKTLQGIKEMGFETMTEI 154
Query: 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLAL 115
Q TI P L RD+ + TGSGKTL++ +P ++ LS + +VV PTR+LAL
Sbjct: 155 QQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGTGVIVVSPTRELAL 214
Query: 116 QV 117
Q+
Sbjct: 215 QI 216
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 215 (80.7 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 54/179 (30%), Positives = 92/179 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATLT N+L L ++ P F + E + Y L+ E+ +K YLV L+Q+
Sbjct: 183 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEA-VKDAYLVHLIQT 241
Query: 369 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+E I+FT + + L +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHS---MMKQRQRFAALAKFKSSI 298
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G T++ + ++
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDI 357
Score = 117 (46.2 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQL 263
EL +++ATPGRL DH+ ++ F+L+ L +LV+DE DRLL + + A L +L+
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 175
Query: 264 TRSDNENRFSDASTFLPSAFGSLKTI 289
+ + A+ L LK++
Sbjct: 176 VPARRQTLLFSAT--LTDTLNELKSL 199
Score = 113 (44.8 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQT 93
L P L + MG+S PVQ + I P L RD C+ + TGSGKT ++ LP++Q
Sbjct: 9 LAPWLVEQARQMGLSRPTPVQASC----IPPILQGRD-CLGCAKTGSGKTAAFVLPVLQV 63
Query: 94 LSNRAVRCLRALVVLPTRDLALQV 117
LS LV+ PTR+LA Q+
Sbjct: 64 LSEDPYGIF-CLVLTPTRELAYQI 86
Score = 40 (19.1 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F + +GL + VG + + EL ++P
Sbjct: 85 QIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 121
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 245 (91.3 bits), Expect = 3.6e-31, Sum P(3) = 3.6e-31
Identities = 62/182 (34%), Positives = 102/182 (56%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKPL-YLVAL 365
M+ SAT+T +KL ++ L+ P+ L +T+ L E +L + K L YL+ L
Sbjct: 479 MLFSATMTDSVDKLIRVGLNRPVRLMV-DTKKNTAVTLVQEFVRLRPGREDKRLGYLLHL 537
Query: 366 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425
+ + + IVF + HR+ + FG L +K E G Q R K++++FR+G +
Sbjct: 538 CKEVYTGRVIVFFRQKKEAHRVRIV---FGLLGLKAAELHGSMSQEQRIKSVESFRDGNV 594
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
L+++D +RG+D++GV V+NY+ P + Y+HR GRTARAG+ GR T+ + + K
Sbjct: 595 NFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKV 654
Query: 486 FK 487
K
Sbjct: 655 VK 656
Score = 114 (45.2 bits), Expect = 3.6e-31, Sum P(3) = 3.6e-31
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRS 266
L+ D+++ATPGR +DH+ + FT++ L LV+DE DR+L + + L +L + +S
Sbjct: 416 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 475
Query: 267 DNENRFSDAST 277
FS T
Sbjct: 476 RQTMLFSATMT 486
Score = 106 (42.4 bits), Expect = 3.6e-31, Sum P(3) = 3.6e-31
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 103
G++++ F + Q+TI L +D+ ++ TGSGKT ++ +PI++ L R V R
Sbjct: 312 GLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSR 371
Query: 104 ALVVLPTRDLALQVNSARCK 123
+++PTR+LA+Q + K
Sbjct: 372 VAILMPTRELAVQCYNVATK 391
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 237 (88.5 bits), Expect = 4.5e-31, Sum P(4) = 4.5e-31
Identities = 57/179 (31%), Positives = 97/179 (54%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATLT +L L + P F T + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNEPFFWEAQAT-VRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 369 LGE--EKC--IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+ E C I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 108 (43.1 bits), Expect = 4.5e-31, Sum P(4) = 4.5e-31
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251
EL +++ATPGRL DH+ ++ F ++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQ 160
Score = 99 (39.9 bits), Expect = 4.5e-31, Sum P(4) = 4.5e-31
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQV 117
LV+ PTR+LA Q+
Sbjct: 72 F-CLVLTPTRELAYQI 86
Score = 41 (19.5 bits), Expect = 4.5e-31, Sum P(4) = 4.5e-31
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F + +GL + VG + + EL ++P
Sbjct: 85 QIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 236 (88.1 bits), Expect = 5.2e-31, Sum P(4) = 5.2e-31
Identities = 55/179 (30%), Positives = 96/179 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATLT +L L + P F + + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLRELQSLATNQPFFWEA-QAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 369 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 109 (43.4 bits), Expect = 5.2e-31, Sum P(4) = 5.2e-31
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
Score = 99 (39.9 bits), Expect = 5.2e-31, Sum P(4) = 5.2e-31
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQV 117
LV+ PTR+LA Q+
Sbjct: 72 F-CLVLTPTRELAYQI 86
Score = 41 (19.5 bits), Expect = 5.2e-31, Sum P(4) = 5.2e-31
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F + +GL + VG + + EL ++P
Sbjct: 85 QIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 246 (91.7 bits), Expect = 6.2e-31, Sum P(3) = 6.2e-31
Identities = 60/196 (30%), Positives = 105/196 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPL-YLVALL 366
M+ SAT+T + L ++ L+ P+ L + + + + +L + K + YLV L
Sbjct: 436 MLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLC 495
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
++L E+ I+F + H + FG L + E G Q R ++++AFR+GK+
Sbjct: 496 KNLYTERVIIFFRQKKIAHHARII---FGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVS 552
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
L+++D +RG+D++GV+ V+NY+ P ++ Y+HR GRTARAG+ G TL + + K
Sbjct: 553 FLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVV 612
Query: 487 KKLLQKADNDSCPIHS 502
K ++ I S
Sbjct: 613 KAAVKAGKAQGAKISS 628
Score = 111 (44.1 bits), Expect = 6.2e-31, Sum P(3) = 6.2e-31
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTR 265
EL+ D+++ATPGR +DH+ + F ++ + LV+DE DR+L + + L +L L +
Sbjct: 372 ELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPK 431
Query: 266 SDNENRFSDAST 277
S FS T
Sbjct: 432 SRQTMLFSATMT 443
Score = 105 (42.0 bits), Expect = 6.2e-31, Sum P(3) = 6.2e-31
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L+ L ++G + P+Q +TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 265 PILR-GLTSVGFAKPTPIQ----SKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 319
Query: 97 RA--VRCLRALVVLPTRDLALQVNSARCK 123
R V R +++ PTR+LA+Q ++ K
Sbjct: 320 RPKKVPTSRVVILAPTRELAIQCHAVATK 348
Score = 39 (18.8 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 214
Q V +A + LAVG S+ + SEL RP + I P + ++++
Sbjct: 341 QCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDV---IIATPGRFIDHMRNSASF 397
Query: 215 LVAT 218
V T
Sbjct: 398 AVDT 401
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 239 (89.2 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 63/204 (30%), Positives = 106/204 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 367
M+ SAT+ L + L++PL + G++ KL + + Y + +S + + L++
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 368 SLGEE-KCIVFTSSVESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLKAFREGKI 425
G+ KCIVFT + RL FG + K + G Q+ R +TL FR+G
Sbjct: 357 EHGKGGKCIVFTQTKRDADRLA-----FGLAKSYKCEALHGDISQAQRERTLAGFRDGNF 411
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
+LV++D RG+DV V+ V++Y+ P +T++HR GRT RAG+ G L+H + R
Sbjct: 412 SILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIHGQDQTR 470
Query: 486 FKKLLQKADNDSCPIHSIPSSLIE 509
K+++K + +PS +E
Sbjct: 471 AVKMIEKEVGSR--FNELPSIAVE 492
Score = 123 (48.4 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P + AL+ GI LFP+Q AV + P + RD+ + TG+GKTL++ +PI+ +
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKI 178
Query: 95 SNRAVRCLRA-----LVVLPTRDLALQV 117
+ R LV+ PTR+LA QV
Sbjct: 179 IKFNAKHGRGKNPQCLVLAPTRELARQV 206
Score = 93 (37.8 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
++EL +D+ V TPGR++D + RG L + ++V+DE D++L+ + + +LQ
Sbjct: 232 MRELNYGIDVAVGTPGRIIDLMK--RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQK 289
Query: 264 TRSDNENRFSDASTFLPSAFGSL 286
+ ++ A+ +PS SL
Sbjct: 290 LPAKRQSMMFSAT--MPSWIRSL 310
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 234 (87.4 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 55/179 (30%), Positives = 96/179 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATLT +L L + P F + + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEA-QAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 369 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 109 (43.4 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
Score = 99 (39.9 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQV 117
LV+ PTR+LA Q+
Sbjct: 72 F-CLVLTPTRELAYQI 86
Score = 41 (19.5 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F + +GL + VG + + EL ++P
Sbjct: 85 QIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 215 (80.7 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 54/179 (30%), Positives = 92/179 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATLT N+L L ++ P F + E + Y L+ E+ +K YLV L+Q+
Sbjct: 186 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEA-VKDAYLVHLIQT 244
Query: 369 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+E I+FT + + L +L F + + + +Q R L F+
Sbjct: 245 FQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHS---MMKQRQRFAALAKFKSSI 301
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G T++ + ++
Sbjct: 302 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDI 360
Score = 117 (46.2 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQL 263
EL +++ATPGRL DH+ ++ F+L+ L +LV+DE DRLL + + A L +L+
Sbjct: 119 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 178
Query: 264 TRSDNENRFSDASTFLPSAFGSLKTI 289
+ + A+ L LK++
Sbjct: 179 VPARRQTLLFSAT--LTDTLNELKSL 202
Score = 113 (44.8 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQT 93
L P L + MG+S PVQ + I P L RD C+ + TGSGKT ++ LP++Q
Sbjct: 12 LAPWLVEQARQMGLSRPTPVQASC----IPPILQGRD-CLGCAKTGSGKTAAFVLPVLQV 66
Query: 94 LSNRAVRCLRALVVLPTRDLALQV 117
LS LV+ PTR+LA Q+
Sbjct: 67 LSEDPYGIF-CLVLTPTRELAYQI 89
Score = 40 (19.1 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F + +GL + VG + + EL ++P
Sbjct: 88 QIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 124
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 223 (83.6 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 59/187 (31%), Positives = 96/187 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 184 LLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGK 242
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+VL
Sbjct: 243 GNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK- 487
V++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K +
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 488 --KLLQK 492
KLL+K
Sbjct: 360 IEKLLKK 366
Score = 116 (45.9 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L P + A+ G P+Q Q+ I P + E RDL ++ TG+GKT + LP++Q
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAI-PAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 94 LSNRAV-----RCLRALVVLPTRDLALQV 117
L R R +RAL++ PTR+LA Q+
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQI 91
Score = 107 (42.7 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAY 253
G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE DR+L +
Sbjct: 112 GVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGF 166
Query: 254 QAWLPTVLQLTRSDNENRFSDASTF 278
+ VL + +N A TF
Sbjct: 167 IHDIRRVLTKLPAKRQNLLFSA-TF 190
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 227 (85.0 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 66/201 (32%), Positives = 104/201 (51%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLI 352
VE ++ P R M+ SAT+ KLA+ L +PL + G+ KL E ++ Y +
Sbjct: 273 VESILENLPTKRQ-SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIA 331
Query: 353 CESKLKPLYLVALLQSLGEE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 411
S K L L+ + K IVFT + + L++ I + G Q
Sbjct: 332 TTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN----SIATEALHGDISQH 387
Query: 412 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 471
R +TL AFR+GK VLV++D +RG+D+ V+ V++Y+ P +T++HR+GRT RAG+
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
Query: 472 GRCFTLLHKDEVKRFKKLLQK 492
G L+H KR + L++
Sbjct: 448 GSAI-LMHTSSQKRTVRSLER 467
Score = 135 (52.6 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 36/92 (39%), Positives = 55/92 (59%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L RL+ +L+ GI+ LFP+Q AV + P L RD+ + TG+GKTL++ +PI++ L
Sbjct: 109 LPQRLEESLEKRGITHLFPIQRAV----LVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 164
Query: 95 SN---------RAVRCLRALVVLPTRDLALQV 117
+ R+ R + LV+ PTR+LA QV
Sbjct: 165 TEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 196
Score = 96 (38.9 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G+ Y + L VD++V TPGR++D I R L + YLV+DE D++L ++
Sbjct: 215 GVSYTIQQ--SALTRGVDVVVGTPGRIIDLIEG-RSLKLGEVEYLVLDEADQMLAVGFEE 271
Query: 256 WLPTVLQ 262
+ ++L+
Sbjct: 272 AVESILE 278
Score = 41 (19.5 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 423 GKIQVLVSSDAMTRGMDV 440
G + + A+TRG+DV
Sbjct: 214 GGVSYTIQQSALTRGVDV 231
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 230 (86.0 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 55/179 (30%), Positives = 94/179 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATLT +L L + P F + E+L+ L+ K+K YLV L+Q
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEA-QAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 369 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 109 (43.4 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
Score = 99 (39.9 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQV 117
LV+ PTR+LA Q+
Sbjct: 72 F-CLVLTPTRELAYQI 86
Score = 41 (19.5 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F + +GL + VG + + EL ++P
Sbjct: 85 QIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 244 (91.0 bits), Expect = 3.9e-30, Sum P(3) = 3.9e-30
Identities = 63/210 (30%), Positives = 109/210 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT +LAQ L P+ + G + ++ K ++ A + S
Sbjct: 423 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDS 482
Query: 369 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ ++K I+F S L + L G RI ++ G + QS R + LK+F+ GK+++
Sbjct: 483 MSPKDKVIIFVSRKAVADHLSSDL---GIRRISVESLHGNREQSDRERALKSFKTGKVRI 539
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
L+++D +RG+DV V +V NYD P I+ Y+HR GRT RAG+ G TL+ +++ K
Sbjct: 540 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAG 599
Query: 488 KLLQKADNDSCPIHSIPSSLIESLRPVYKS 517
+L+ + + S+P L+ S+ YK+
Sbjct: 600 ELINILERAN---QSVPEDLV-SMAERYKA 625
Score = 107 (42.7 bits), Expect = 3.9e-30, Sum P(3) = 3.9e-30
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 200 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259
D + +++L DI++ATPGRL D + L+ + YLV+DE D++L ++ +
Sbjct: 353 DRDGQIKDLSKGADIIIATPGRLHD-LQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMK 411
Query: 260 VLQLTRSDNENRFSDAS 276
+L R D + + A+
Sbjct: 412 ILLDVRPDRQTVMTSAT 428
Score = 99 (39.9 bits), Expect = 3.9e-30, Sum P(3) = 3.9e-30
Identities = 34/105 (32%), Positives = 51/105 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D C P + ++ G P+Q W I G+ DL + TG+GKTLSY +P
Sbjct: 244 DAFHCY-PEVMRNIEKAGFQKPTPIQSQAWP-IILQGI---DLIGVAQTGTGKTLSYLMP 298
Query: 90 -IV----QTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129
+ Q + RA LV+ PTR+LALQV++ +Y + +
Sbjct: 299 GFIHIDSQPVLQRARNGPGMLVLTPTRELALQVDAECSEYSYRGL 343
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 218 (81.8 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 57/189 (30%), Positives = 98/189 (51%)
Query: 303 YPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 360
+ R ++ SATL N++A L +PL + G T + + + +C+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG-TAHAEHQDISQRIYLCDHLDHKEA 235
Query: 361 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420
L LL ++ I+FT++ T RL L+ G + SG +Q+ R++ + F
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAAL---SGELKQAARNQIMDQF 292
Query: 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480
G+ Q+LV++D +RG+D+ V+ V+N+D P + + Y+HR GRT RAG G +L+
Sbjct: 293 ARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGP 352
Query: 481 DEVKRFKKL 489
+ FKK+
Sbjct: 353 KDWDSFKKV 361
Score = 144 (55.7 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-T 93
LD RL +L++MGI++ P A+ ++ + L +DL +S TGSGKTL++ LP +Q
Sbjct: 8 LDQRLLQSLKHMGIAT--PT--AIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV 63
Query: 94 LSNRAV--RCLRALVVLPTRDLALQVNS 119
+S RA+ R R L++LPTR+LA QV S
Sbjct: 64 ISTRALSKRDPRVLILLPTRELAHQVYS 91
Score = 81 (33.6 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 203 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
D + L +VATPGR+ DH+ F L L L++DE DR+L + L + +
Sbjct: 115 DQAKALAKEPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 263 LTRSDNENR 271
+D++ R
Sbjct: 174 A--ADHKRR 180
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 218 (81.8 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 57/189 (30%), Positives = 98/189 (51%)
Query: 303 YPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 360
+ R ++ SATL N++A L +PL + G T + + + +C+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG-TAHAEHQDISQRIYLCDHLDHKEA 235
Query: 361 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420
L LL ++ I+FT++ T RL L+ G + SG +Q+ R++ + F
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAAL---SGELKQAARNQIMDQF 292
Query: 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480
G+ Q+LV++D +RG+D+ V+ V+N+D P + + Y+HR GRT RAG G +L+
Sbjct: 293 ARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGP 352
Query: 481 DEVKRFKKL 489
+ FKK+
Sbjct: 353 KDWDSFKKV 361
Score = 144 (55.7 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-T 93
LD RL +L++MGI++ P A+ ++ + L +DL +S TGSGKTL++ LP +Q
Sbjct: 8 LDQRLLQSLKHMGIAT--PT--AIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV 63
Query: 94 LSNRAV--RCLRALVVLPTRDLALQVNS 119
+S RA+ R R L++LPTR+LA QV S
Sbjct: 64 ISTRALSKRDPRVLILLPTRELAHQVYS 91
Score = 81 (33.6 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 203 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
D + L +VATPGR+ DH+ F L L L++DE DR+L + L + +
Sbjct: 115 DQAKALAKEPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 263 LTRSDNENR 271
+D++ R
Sbjct: 174 A--ADHKRR 180
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 230 (86.0 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 65/209 (31%), Positives = 107/209 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT +LA L P+ + G + ++ +I + K LQS
Sbjct: 397 IMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQS 456
Query: 369 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
L ++K IVF S L + L+ G I ++ G + QS R + L F+ GK+++
Sbjct: 457 LSPKDKVIVFVSRKLIADDLSSDLSIQG---IPVQSLHGDREQSDRERALDDFKTGKVKI 513
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
L+++D +RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ K
Sbjct: 514 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 573
Query: 488 KLLQKADNDSCPIHSIPSSLIESLRPVYK 516
+L++ + SIP L+ S+ YK
Sbjct: 574 ELIEILQRAN---QSIPEDLL-SMAEQYK 598
Score = 111 (44.1 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 35/98 (35%), Positives = 51/98 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L +++ G P+Q W + G+ DL + TG+GKTLSY +P L++
Sbjct: 224 PELMKSIKKAGFQKPTPIQSQAWPIVL-QGI---DLIGIAQTGTGKTLSYLMPGFIHLNS 279
Query: 97 RAV-RCLR----ALVVLPTRDLALQVNSARCKYCCKNI 129
+ V R R LV+ PTR+LALQV + KY K +
Sbjct: 280 QPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGL 317
Score = 109 (43.4 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 332 IQDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 390
Query: 265 RSDNENRFSDAS 276
R D + + A+
Sbjct: 391 RPDRQTIMTSAT 402
Score = 50 (22.7 bits), Expect = 9.7e-24, Sum P(3) = 9.7e-24
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+ + +++ P++ W + +V +E D LP + V + SS+ VQV +W++
Sbjct: 135 DNSVREAQPLIDWDQIKAEVVEWEKRKWD-LPPIHKNFYV--ETKATSSMSQVQVDIWRK 191
Score = 38 (18.4 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 292 CGVERGFKDKPYPRLVKMVLSATLTQDPNKL 322
C E F PYP L+K + A Q P +
Sbjct: 214 CKFEDAFG--PYPELMKSIKKAGF-QKPTPI 241
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 257 (95.5 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 64/187 (34%), Positives = 104/187 (55%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL-ESYKLICESKLKPLYLVALLQS 368
+ SAT+T+ KL + L +P+ + ++Y + L + Y+ + +K K YLV +L
Sbjct: 200 LFSATMTKKVRKLQRACLRNPVKIEAA-SKYSTVDTLKQQYRFVA-AKYKDCYLVYILSE 257
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
+ E ++FT + + T L +L G I I SG QS R L F+ G+ +L
Sbjct: 258 MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPI---SGQMTQSKRLGALNKFKAGECNIL 314
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---R 485
V +D +RG+D+ V+ V+NYD P K YIHR GRTARAG+ G +L+++ E++ +
Sbjct: 315 VCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQ 374
Query: 486 FKKLLQK 492
+KL+ K
Sbjct: 375 IEKLIGK 381
Score = 142 (55.0 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 38/104 (36%), Positives = 60/104 (57%)
Query: 160 FAAI-APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 218
FA + +P L++ +A ++ +IS ++ L GI D L ++VAT
Sbjct: 91 FACVLSPTRELAIQIAEQFEALGADIS--LRCAVLVGGI--DRMQQTIALGKRPHVIVAT 146
Query: 219 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
PGRL DH++ T+GF+L+ L YLV+DE DRLL E ++ L +L+
Sbjct: 147 PGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
Score = 69 (29.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL-----------SNRAVRCLRALVVLPTRDLALQV 117
+D+ + TGSGKT ++A+PI+Q L R A V+ PTR+LA+Q+
Sbjct: 47 KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQI 105
Score = 37 (18.1 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F A+ + L + VG + L KRP
Sbjct: 104 QIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRP 140
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 230 (86.0 bits), Expect = 5.2e-30, Sum P(3) = 5.2e-30
Identities = 65/209 (31%), Positives = 107/209 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT +LA L P+ + G + ++ +I + K LQS
Sbjct: 406 IMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQS 465
Query: 369 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
L ++K IVF S L + L+ G I ++ G + QS R + L F+ GK+++
Sbjct: 466 LSPKDKVIVFVSRKLIADDLSSDLSIQG---IPVQSLHGDREQSDRERALDDFKTGKVKI 522
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
L+++D +RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ K
Sbjct: 523 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 582
Query: 488 KLLQKADNDSCPIHSIPSSLIESLRPVYK 516
+L++ + SIP L+ S+ YK
Sbjct: 583 ELIEILQRAN---QSIPEDLL-SMAEQYK 607
Score = 111 (44.1 bits), Expect = 5.2e-30, Sum P(3) = 5.2e-30
Identities = 35/98 (35%), Positives = 51/98 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L +++ G P+Q W + G+ DL + TG+GKTLSY +P L++
Sbjct: 233 PELMKSIKKAGFQKPTPIQSQAWPIVL-QGI---DLIGIAQTGTGKTLSYLMPGFIHLNS 288
Query: 97 RAV-RCLR----ALVVLPTRDLALQVNSARCKYCCKNI 129
+ V R R LV+ PTR+LALQV + KY K +
Sbjct: 289 QPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGL 326
Score = 109 (43.4 bits), Expect = 5.2e-30, Sum P(3) = 5.2e-30
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 341 IQDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 399
Query: 265 RSDNENRFSDAS 276
R D + + A+
Sbjct: 400 RPDRQTIMTSAT 411
Score = 50 (22.7 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+ + +++ P++ W + +V +E LP + V + SS+ VQV +W++
Sbjct: 143 DNSVREAQPLIDWDQIKAEVVEWEKRKWADLPPIHKNFYV--ETKATSSMSQVQVDIWRK 200
Score = 38 (18.4 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 292 CGVERGFKDKPYPRLVKMVLSATLTQDPNKL 322
C E F PYP L+K + A Q P +
Sbjct: 223 CKFEDAFG--PYPELMKSIKKAGF-QKPTPI 250
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 278 (102.9 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 251
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 480 KDEVKRFKKL 489
+ +V+ F+++
Sbjct: 369 QYDVELFQRI 378
Score = 139 (54.0 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 249
Query: 334 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 392
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 393 HF 394
F
Sbjct: 308 KF 309
Score = 104 (41.7 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVN 118
LA Q++
Sbjct: 104 LAFQIS 109
Score = 46 (21.3 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 107 QISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 145
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 278 (102.9 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 251
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 480 KDEVKRFKKL 489
+ +V+ F+++
Sbjct: 369 QYDVELFQRI 378
Score = 139 (54.0 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 249
Query: 334 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 392
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 393 HF 394
F
Sbjct: 308 KF 309
Score = 104 (41.7 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVN 118
LA Q++
Sbjct: 104 LAFQIS 109
Score = 46 (21.3 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 107 QISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 145
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 233 (87.1 bits), Expect = 5.7e-30, Sum P(3) = 5.7e-30
Identities = 61/210 (29%), Positives = 106/210 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT +LAQ L P+ + G ++ ++ K ++ ++S
Sbjct: 426 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIES 485
Query: 369 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ ++K I+F S L + L G I ++ G + Q R + LK F+ GK+++
Sbjct: 486 MSPKDKVIIFVSRKAVADHLSSDL---GIRHISVESLHGNREQGDRERALKNFKTGKVRI 542
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
L+++D +RG+DV V +V NYD P I+ Y+HR GRT RAG+ G TL+ + + K
Sbjct: 543 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAG 602
Query: 488 KLLQKADNDSCPIHSIPSSLIESLRPVYKS 517
+L+ + + SIP L+E + YK+
Sbjct: 603 ELIHILERAN---QSIPEDLVE-MAERYKA 628
Score = 109 (43.4 bits), Expect = 5.7e-30, Sum P(3) = 5.7e-30
Identities = 38/108 (35%), Positives = 52/108 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D C P + + ++ G P+Q W I G+ DL + TG+GKTLSY +P
Sbjct: 244 DAFQCY-PEVMINIKKAGFQKPTPIQSQAWP-IILQGI---DLIGVAQTGTGKTLSYLMP 298
Query: 90 -IVQTLSNRAVRCL-RA------LVVLPTRDLALQVNSARCKYCCKNI 129
+ S V L RA LV+ PTR+LALQV + KY K +
Sbjct: 299 GFIHVDSQPVVFSLQRARNGPGMLVLTPTRELALQVEAECSKYSYKGL 346
Score = 108 (43.1 bits), Expect = 5.7e-30, Sum P(3) = 5.7e-30
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 200 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259
D + +++L VDI++ATPGRL D + L+ + YLV+DE D++L ++ +
Sbjct: 356 DRDGQIKDLLKGVDIIIATPGRLND-LQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMK 414
Query: 260 VLQLTRSDNENRFSDAS 276
+L R D + + A+
Sbjct: 415 ILLDIRPDRQTVMTSAT 431
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 278 (102.9 bits), Expect = 5.8e-30, Sum P(3) = 5.8e-30
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 195 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 253
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 254 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 310
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 311 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 370
Query: 480 KDEVKRFKKL 489
+ +V+ F+++
Sbjct: 371 QYDVELFQRI 380
Score = 139 (54.0 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 202
Query: 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 203 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 251
Query: 334 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 392
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 252 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 309
Query: 393 HF 394
F
Sbjct: 310 KF 311
Score = 104 (41.7 bits), Expect = 5.8e-30, Sum P(3) = 5.8e-30
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVN 118
LA Q++
Sbjct: 106 LAFQIS 111
Score = 46 (21.3 bits), Expect = 5.8e-30, Sum P(3) = 5.8e-30
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 109 QISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 147
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 222 (83.2 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
Identities = 61/211 (28%), Positives = 108/211 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT ++LAQ L P+ + G ++ ++ + K ++ LQS
Sbjct: 424 VMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQS 483
Query: 369 LGE-EKCIVFTS-SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ +K IVF S + H L+ G I ++ G + Q R K L+ F+ GK++
Sbjct: 484 MSSTDKVIVFVSRKAVADHLSSDLI--LGN--ISVESLHGDREQRDREKALENFKTGKVR 539
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+L+++D +RG+DV V +V N+D P I+ Y+HR GRT RAG+ G T L +++ +
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599
Query: 487 KKLLQKADNDSCPIHSIPSSLIESLRPVYKS 517
+L+ + + SIP L+ S+ +K+
Sbjct: 600 SELINILERAN---QSIPEELV-SMAERFKA 626
Score = 120 (47.3 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
++ ++EL+ VDI++ATPGRL D + + L+++ YLV+DE D++L ++ + +L
Sbjct: 356 DEQIEELKKGVDIIIATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Query: 262 QLTRSDNENRFSDAS 276
R D + + A+
Sbjct: 415 LDVRPDRQTVMTSAT 429
Score = 109 (43.4 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
Identities = 33/105 (31%), Positives = 50/105 (47%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D C P + ++ G P+Q W + G+ DL + TG+GKTL Y +P
Sbjct: 245 DAFQCY-PEVMENIKKAGFQKPTPIQSQAWPIVL-QGI---DLIGVAQTGTGKTLCYLMP 299
Query: 90 -IVQTLSNRAVRCLR----ALVVLPTRDLALQVNSARCKYCCKNI 129
+ + +++ R LV+ PTR+LALQV CKY K +
Sbjct: 300 GFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGL 344
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 229 (85.7 bits), Expect = 8.9e-30, Sum P(3) = 8.9e-30
Identities = 53/175 (30%), Positives = 96/175 (54%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + + LA+ +++PL ++ + E++ + + K KP L L++
Sbjct: 189 LLFSATFSPEIRALAKGMVNNPLEISV-DAENSTAEKVTQWLTAVDKKRKPAVLTHLIKE 247
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
++ +VFT + ++L L G I G + Q R+K L AF++G +++L
Sbjct: 248 NNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIH---GNKSQGARTKALAAFKDGSVKIL 304
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
V++D RG+D++ + VVN+D P + Y+HR GRTARAG G+ +L+ DE+
Sbjct: 305 VATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADEL 359
Score = 106 (42.4 bits), Expect = 8.9e-30, Sum P(3) = 8.9e-30
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G+ +P+ + L+ VD+LVATPGRL+D N R L ++DE DR+L +
Sbjct: 117 GVKINPQ--IARLRQGVDVLVATPGRLLDLYNQ-RAVKFSQLEVFILDEADRMLDMGFIR 173
Query: 256 WLPTVLQLTRSDNENRFSDASTFLP 280
+ ++ D +N A TF P
Sbjct: 174 DIKKLMTALPKDRQNLLFSA-TFSP 197
Score = 104 (41.7 bits), Expect = 8.9e-30, Sum P(3) = 8.9e-30
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A+++ G + P+Q + I + RD+ + TG+GKT + LP++Q L
Sbjct: 13 LSEALLKAVRDKGYETPSPIQA----QAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRL 68
Query: 95 S----NR-AVRCLRALVVLPTRDLALQVNSA 120
S N+ + +RAL++ PTR+LA Q++ +
Sbjct: 69 SSSKGNKVSSNNVRALILTPTRELAAQISES 99
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 271 (100.5 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 64/190 (33%), Positives = 105/190 (55%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 194 KVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKD 252
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV +L L ++F S+ +T R LL + G I + G Q+ R +L
Sbjct: 253 SYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQNKRLGSLNK 309
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ +L+++D +RG+D+ V+ V+N+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 310 FKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 369
Query: 480 KDEVKRFKKL 489
+ +V+ F+++
Sbjct: 370 QYDVELFQRI 379
Score = 135 (52.6 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 48/158 (30%), Positives = 77/158 (48%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273
I++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK---- 201
Query: 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333
TFL SA + K +++ ++R P VK +S+ Q KL Q + P
Sbjct: 202 ---TFLFSATMT-KQVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYIFIPSKF 250
Query: 334 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLG 370
Y L E S+ + C + LL++LG
Sbjct: 251 KDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLG 288
Score = 112 (44.5 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L + R L ALV+ PTR+
Sbjct: 48 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRE 104
Query: 113 LALQVN 118
LA Q++
Sbjct: 105 LAFQIS 110
Score = 44 (20.5 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 108 QISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHI 146
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 203 (76.5 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 50/152 (32%), Positives = 85/152 (55%)
Query: 362 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421
LV++L S + IVF + + + LN G K G Q R++T+K+F+
Sbjct: 230 LVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRG---YAAKGLHGDMSQRERTQTIKSFK 286
Query: 422 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 481
GK ++LV++D RG+D+ V++V+N+D P ++YIHR GRT RAG+ G+ TL++
Sbjct: 287 AGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYR 346
Query: 482 EVKRFKKLLQKADNDSCPIHSIPSSL-IESLR 512
E ++ K +++A N +P + +E R
Sbjct: 347 E-RKLLKAIEEAINKRLKREILPEPVDLEEAR 377
Score = 119 (46.9 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 34/126 (26%), Positives = 62/126 (49%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ADE+++L K K+ A Y + + ++ L+ V+++V TPGR++DHI + F
Sbjct: 85 VADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGR-KTFPAAE 143
Query: 237 LCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDA-----STFLPSAFGSLKTIR 290
+ +++DE D +L + + +L LT FS T + G KT++
Sbjct: 144 IKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVK 203
Query: 291 RCGVER 296
G E+
Sbjct: 204 LVGREK 209
Score = 118 (46.6 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPI 90
L + P LK A+ ++G P+Q +E I P + E +L +PTG+GKT +Y LP+
Sbjct: 7 LGLITPLLK-AVNDLGFEMPTPIQ----KEAI-PLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 91 VQTLSNRAVRCLRALVVLPTRDLALQV 117
+Q + R + + L+V PTR+LALQV
Sbjct: 61 LQRIQ-RGKKA-QVLIVTPTRELALQV 85
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 203 (76.5 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 50/152 (32%), Positives = 85/152 (55%)
Query: 362 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421
LV++L S + IVF + + + LN G K G Q R++T+K+F+
Sbjct: 230 LVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRG---YAAKGLHGDMSQRERTQTIKSFK 286
Query: 422 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 481
GK ++LV++D RG+D+ V++V+N+D P ++YIHR GRT RAG+ G+ TL++
Sbjct: 287 AGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYR 346
Query: 482 EVKRFKKLLQKADNDSCPIHSIPSSL-IESLR 512
E ++ K +++A N +P + +E R
Sbjct: 347 E-RKLLKAIEEAINKRLKREILPEPVDLEEAR 377
Score = 119 (46.9 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 34/126 (26%), Positives = 62/126 (49%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ADE+++L K K+ A Y + + ++ L+ V+++V TPGR++DHI + F
Sbjct: 85 VADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGR-KTFPAAE 143
Query: 237 LCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDA-----STFLPSAFGSLKTIR 290
+ +++DE D +L + + +L LT FS T + G KT++
Sbjct: 144 IKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVK 203
Query: 291 RCGVER 296
G E+
Sbjct: 204 LVGREK 209
Score = 118 (46.6 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPI 90
L + P LK A+ ++G P+Q +E I P + E +L +PTG+GKT +Y LP+
Sbjct: 7 LGLITPLLK-AVNDLGFEMPTPIQ----KEAI-PLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 91 VQTLSNRAVRCLRALVVLPTRDLALQV 117
+Q + R + + L+V PTR+LALQV
Sbjct: 61 LQRIQ-RGKKA-QVLIVTPTRELALQV 85
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 185 (70.2 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 59/218 (27%), Positives = 104/218 (47%)
Query: 305 RLVKMVLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 363
R M+ SATL + A+ L+ P+ + R K ++ + + + K L+
Sbjct: 178 RKQNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPR-KEKAKIHQWIHLADDKDHKFALL 236
Query: 364 A-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422
LL+ ++ IVF V++ + +L + I G Q R + L F +
Sbjct: 237 CHLLKQEDVKRAIVF---VKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTK 293
Query: 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482
G++ VL+++D RG+D++ +++V+N+D P TYIHR GRT RAG G +L +
Sbjct: 294 GEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 483 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 520
++ K+ + + P+ +IE LRP +K V
Sbjct: 354 MRIVGKIERYIEQ---PLKR---RIIEELRPKHKEARV 385
Score = 136 (52.9 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L +L+ MG L P + QET+ L +RD+ +PTG+GKT S+ LP +Q L
Sbjct: 8 LDPSLLESLKAMG--HLSPTTIQ--QETLPHALEQRDILARAPTGTGKTASFLLPALQHL 63
Query: 95 SNRAVRC---LRALVVLPTRDLALQVNSARC 122
+ R R L++ PTR+LA Q++ C
Sbjct: 64 IDFPRRYSGQARVLILTPTRELASQIHRYAC 94
Score = 121 (47.7 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 193 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 252
+ G+ Y P++ + L+ +DILVATPGRLM++++ + F+ E + L++DE DR+L
Sbjct: 107 ITGGVPYAPQE--EALKGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMG 163
Query: 253 YQAWLPTVLQLTRSDNENRFSDAS 276
+ A + + + +N A+
Sbjct: 164 FSAVVKAIALEAQGRKQNMLFSAT 187
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 185 (70.2 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 59/218 (27%), Positives = 104/218 (47%)
Query: 305 RLVKMVLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 363
R M+ SATL + A+ L+ P+ + R K ++ + + + K L+
Sbjct: 178 RKQNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPR-KEKAKIHQWIHLADDKDHKFALL 236
Query: 364 A-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422
LL+ ++ IVF V++ + +L + I G Q R + L F +
Sbjct: 237 CHLLKQEDVKRAIVF---VKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTK 293
Query: 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482
G++ VL+++D RG+D++ +++V+N+D P TYIHR GRT RAG G +L +
Sbjct: 294 GEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 483 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 520
++ K+ + + P+ +IE LRP +K V
Sbjct: 354 MRIVGKIERYIEQ---PLKR---RIIEELRPKHKEARV 385
Score = 136 (52.9 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L +L+ MG L P + QET+ L +RD+ +PTG+GKT S+ LP +Q L
Sbjct: 8 LDPSLLESLKAMG--HLSPTTIQ--QETLPHALEQRDILARAPTGTGKTASFLLPALQHL 63
Query: 95 SNRAVRC---LRALVVLPTRDLALQVNSARC 122
+ R R L++ PTR+LA Q++ C
Sbjct: 64 IDFPRRYSGQARVLILTPTRELASQIHRYAC 94
Score = 121 (47.7 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 193 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 252
+ G+ Y P++ + L+ +DILVATPGRLM++++ + F+ E + L++DE DR+L
Sbjct: 107 ITGGVPYAPQE--EALKGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMG 163
Query: 253 YQAWLPTVLQLTRSDNENRFSDAS 276
+ A + + + +N A+
Sbjct: 164 FSAVVKAIALEAQGRKQNMLFSAT 187
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 276 (102.2 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 66/190 (34%), Positives = 105/190 (55%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKD 251
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 480 KDEVKRFKKL 489
+ +V+ F+++
Sbjct: 369 QYDVELFQRI 378
Score = 138 (53.6 bits), Expect = 6.9e-13, Sum P(3) = 6.9e-13
Identities = 55/182 (30%), Positives = 86/182 (47%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333
TFL SA + K +++ ++R P VK +S+ Q KL Q + P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYIFIPSKF 249
Query: 334 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 392
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 393 HF 394
F
Sbjct: 308 KF 309
Score = 104 (41.7 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVN 118
LA Q++
Sbjct: 104 LAFQIS 109
Score = 45 (20.9 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 107 QISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 145
>CGD|CAL0001062 [details] [associations]
symbol:orf19.3704 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001062 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000217 EMBL:AACQ01000216 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_711043.1 RefSeq:XP_711056.1 ProteinModelPortal:Q59MW2
STRING:Q59MW2 GeneID:3647328 GeneID:3647350 KEGG:cal:CaO19.11188
KEGG:cal:CaO19.3704 KO:K14807 Uniprot:Q59MW2
Length = 606
Score = 349 (127.9 bits), Expect = 1.4e-29, P = 1.4e-29
Identities = 109/362 (30%), Positives = 182/362 (50%)
Query: 149 LFISLPQVKDVFAAIAPAVGLSVGLAVGQ--SSIADEISELIKRPKLE-AGICYDPE--D 203
L S+P ++ ++ + P V + + + + + + +L L+ A + D D
Sbjct: 232 LAYSIPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQLSSGTNLQIAALKNDVSIND 291
Query: 204 VLQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
L +V DI+V+TPGRL++H+ L L YL++DE DRLL +++Q W VL
Sbjct: 292 EKDSLTKSVPDIIVSTPGRLVEHL-LNDSINLSSLQYLIIDEADRLLNQSFQNW-SNVL- 348
Query: 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 322
L + D++ ++ + + V+ K+V SATLT D KL
Sbjct: 349 LDKIDSQINIAE--------------VWKLSVQ------------KLVFSATLTTDAGKL 382
Query: 323 AQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-E 372
+ L ++P + +++ + +P L +K+ + ++ LKPL L L S +
Sbjct: 383 SSLKFYNPRLIIVNDSKQLVNEIFTVPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLS 442
Query: 373 KCIVFTSSVESTHRLCTLL-NHFGELRIKIKEY---SGLQRQSVRSKTLKAFREGKIQVL 428
++FT S ES+ RL LL + F +L I +K S R S+RSK LK F ++ +L
Sbjct: 443 NVLIFTKSNESSIRLTELLISLFQKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNIL 502
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFK 487
+++D + RG+DV + +V+NYD P + Y+HR GRTARA Q+G ++ K E F
Sbjct: 503 ITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTARANQVGYAYSFCFGKGENSWFN 562
Query: 488 KL 489
KL
Sbjct: 563 KL 564
Score = 137 (53.3 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 52/188 (27%), Positives = 87/188 (46%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-- 70
P SP D F D L +K L+ MG + F VQ++V + P + +
Sbjct: 160 PQYASPSDKKAFTDFKLSSF-----MIK-NLEKMGFTEAFSVQISVLNMML-PEIEAQKL 212
Query: 71 ------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124
D+ +N+ TGSGKTL+Y++PI+++L R V +R ++++PT+ L QV S +
Sbjct: 213 KPDRVGDILVNASTGSGKTLAYSIPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQL 272
Query: 125 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQ--VKDVFAAIAPAVGLSVGLAVGQSSIAD 182
+ A + + + DSL S+P V + + S+ L+ Q I D
Sbjct: 273 SSGTNLQIAALKNDVSINDEKDSLTK-SVPDIIVSTPGRLVEHLLNDSINLSSLQYLIID 331
Query: 183 EISELIKR 190
E L+ +
Sbjct: 332 EADRLLNQ 339
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 278 (102.9 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 219 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 277
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 278 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 334
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 335 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 394
Query: 480 KDEVKRFKKL 489
+ +V+ F+++
Sbjct: 395 QYDVELFQRI 404
Score = 139 (54.0 bits), Expect = 7.1e-13, Sum P(3) = 7.1e-13
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 171 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 226
Query: 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 227 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 275
Query: 334 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 392
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 276 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 333
Query: 393 HF 394
F
Sbjct: 334 KF 335
Score = 104 (41.7 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 73 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 129
Query: 113 LALQVN 118
LA Q++
Sbjct: 130 LAFQIS 135
Score = 45 (20.9 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 133 QISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 171
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 222 (83.2 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 67/220 (30%), Positives = 107/220 (48%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGL----QRQSVRSKTLK 418
L++ +EK +VF S+ C + ++G+ L + +K + + + R+K
Sbjct: 260 HFLRNHKQEKHLVFFST-------CACVEYYGKALEVLVKGVKIMCIHGKMKYKRNKIFM 312
Query: 419 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 478
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L
Sbjct: 313 EFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFL 372
Query: 479 HKDEVKRFKKLLQKADNDSCPIHSI-PSSLIESLRPVYKS 517
E L A N CP+ + P L P KS
Sbjct: 373 LPMEESYINFL---AINQKCPLQEMKPQRNTADLLPKLKS 409
Score = 126 (49.4 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 32/94 (34%), Positives = 56/94 (59%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPQVLGALRELGFPYMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVN 118
PI++ L R + + A+++ PTR+LA+Q++
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAIQID 99
Score = 96 (38.9 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + Q +I+VATPGRL D G L L LV+DE DRLL ++A
Sbjct: 125 EDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEAS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 185 INTILEFLPKQRRTGLFSATQT 206
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 219 (82.2 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 64/206 (31%), Positives = 105/206 (50%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGAAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-----LR-IKIKEYSGLQRQSVRSKTL 417
L++ +EK +VF S+ C + ++G+ +R +KI G + R+K
Sbjct: 260 HFLRNHKQEKHLVFFST-------CACVEYYGKALEALVRSVKIMCIHGKMKYK-RNKIF 311
Query: 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G
Sbjct: 312 MEFRQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVF 371
Query: 478 LHKDEVKRFKKLLQKADNDSCPIHSI 503
L E + + L A N CP+ ++
Sbjct: 372 LLPME-ESYVNFL--AINQKCPLQAM 394
Score = 129 (50.5 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L PR+ LQ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPRVLDVLQELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVN 118
PI++ L R + + A+++ PTR+LA+Q++
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAVQID 99
Score = 95 (38.5 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + + +I+VATPGRL D G L + L LV+DE DRLL ++A
Sbjct: 125 EDVARFKEHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEAS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 185 INTILEFLPKQRRTGLFSATQT 206
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 217 (81.4 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 64/206 (31%), Positives = 103/206 (50%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------RIKIKEYSGLQRQSVRSKTL 417
L+S +EK +VF S+ C + ++G+ ++KI G + R+K
Sbjct: 260 HFLRSRQQEKHLVFFST-------CACVEYYGKALEALLKKVKILCIHGKMKYK-RNKIF 311
Query: 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVF 371
Query: 478 LHKDEVKRFKKLLQKADNDSCPIHSI 503
L E + + L A N CP+ +
Sbjct: 372 LLPME-EAYINFL--AINQKCPLQEM 394
Score = 130 (50.8 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 32/88 (36%), Positives = 53/88 (60%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L PR+ AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L
Sbjct: 16 LHPRVLGALRELGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVIPILEIL 71
Query: 95 SNRAVRCLR----ALVVLPTRDLALQVN 118
R + + A+V+ PTR+LA+Q++
Sbjct: 72 LRREEKLKKNQVGAIVITPTRELAIQID 99
Score = 96 (38.9 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + Q +I+VATPGRL D G L + L LV+DE DRLL ++A
Sbjct: 125 EDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEAS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 185 INTILEFLPKQRRTGLFSATQT 206
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 230 (86.0 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 64/189 (33%), Positives = 91/189 (48%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353
+ R K P PR ++ SAT+ D LAQ L P+ + G + Y +
Sbjct: 165 IRRVLKHLP-PRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPV-- 221
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
E LK L+ LL+ E ++FT + RL L G + G Q+ R
Sbjct: 222 EQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAG---YRAASLQGNLSQNRR 278
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
L FR+G Q+LV++D RG+DV V++V+NYD P + YIHR GRT RA + G
Sbjct: 279 QAALDGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGD 338
Query: 474 CFTLLHKDE 482
FTL+ D+
Sbjct: 339 AFTLVTSDD 347
Score = 109 (43.4 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P + + G + P+Q + I + RD+ + TG+GKT ++ALPI+ L
Sbjct: 10 PAVATGIAAAGYETPTPIQA----QAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQ 65
Query: 97 RAVRCLRALVVLPTRDLALQVNSA 120
+RALV+ PTR+LA Q+N +
Sbjct: 66 GERGRVRALVIAPTRELAEQINDS 89
Score = 93 (37.8 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 248
G+ +P+ +Q+L++ +++VA PGRL+DHI A L L LV+DE D++
Sbjct: 107 GVGVNPQ--VQKLKAGAEVVVACPGRLLDHI-AQGTIDLSRLEVLVLDEADQM 156
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 227 (85.0 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ +A+ +LAQ L P+ + G ++ ++ + K + LQS
Sbjct: 383 VMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQS 442
Query: 369 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
L ++K IVF S L + L+ G I ++ G + QS R + L+ FR G++++
Sbjct: 443 LSPKDKVIVFVSRKLVADDLSSDLSIQG---IPVQSLHGDREQSDRDQALEDFRTGRVKI 499
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK--- 484
L+++D RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ K
Sbjct: 500 LIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDDWKIAD 559
Query: 485 RFKKLLQKAD 494
K+LQ+A+
Sbjct: 560 ELIKILQRAN 569
Score = 109 (43.4 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 318 IQDVTKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 376
Query: 265 RSDNENRFSDAS 276
R D + + AS
Sbjct: 377 RPDRQTVMTTAS 388
Score = 106 (42.4 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLS 95
P + +++ G P+Q W I G+ DL + TG+GKTLSY +P + S
Sbjct: 210 PEIMQSIRRAGFQKPTPIQSQSWP-IILQGI---DLIGIAQTGTGKTLSYLMPGFIHIHS 265
Query: 96 NRAVRCLR----ALVVLPTRDLALQVNSARCKYCCKNI 129
R R LV+ PTR+LALQV + KY K +
Sbjct: 266 QPVSRKQRNGPGMLVLTPTRELALQVEAECSKYLYKGL 303
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 220 (82.5 bits), Expect = 4.9e-29, Sum P(4) = 4.9e-29
Identities = 54/179 (30%), Positives = 94/179 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATLT +L + ++ P F ++ + E L+ ++ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLQQLQSIAMNRPFFWEH-KSDVQTVEELDQRFILTPEKVKDAYLVHLIQT 241
Query: 369 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+E I+FT++ +S L +L F I + + +Q R L F+
Sbjct: 242 FQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHS---MMKQRQRFANLAKFKSNV 298
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDI 357
Score = 105 (42.0 bits), Expect = 4.9e-29, Sum P(4) = 4.9e-29
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251
EL ++VATPGRL DHI ++ L + +L++DE DRLL +
Sbjct: 116 ELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQ 160
Score = 101 (40.6 bits), Expect = 4.9e-29, Sum P(4) = 4.9e-29
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ MGIS P V QE P + + RD C+ + TGSGKT ++ LP++Q LS
Sbjct: 18 KQMGISR--PTAV---QEKCIPAILDGRD-CMGCAKTGSGKTAAFVLPVLQKLSEDPYGV 71
Query: 102 LRALVVLPTRDLALQV 117
LV+ PTR+LA Q+
Sbjct: 72 F-CLVLTPTRELAYQI 86
Score = 42 (19.8 bits), Expect = 4.9e-29, Sum P(4) = 4.9e-29
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F + +GL + VG + + EL K+P
Sbjct: 85 QIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKP 121
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 221 (82.9 bits), Expect = 7.1e-29, Sum P(3) = 7.1e-29
Identities = 64/200 (32%), Positives = 99/200 (49%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L+S +EK +VF S+ L + R+KI G + R+K FR+
Sbjct: 260 HFLRSRQQEKHLVFFSTCACVEYYGKALEALVQ-RVKILCIHGKMKYK-RNKIFMEFRKL 317
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPME- 376
Query: 484 KRFKKLLQKADNDSCPIHSI 503
+ + L A N CP+ +
Sbjct: 377 EAYINFL--AINQKCPLQEM 394
Score = 122 (48.0 bits), Expect = 7.1e-29, Sum P(3) = 7.1e-29
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L
Sbjct: 16 LHPLVLGALRELGFLHMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVIPILEIL 71
Query: 95 SNRAVRCLR----ALVVLPTRDLALQVN 118
R + + A+V+ PTR+LA+Q++
Sbjct: 72 LRREEKLKKNQVGAIVITPTRELAIQID 99
Score = 96 (38.9 bits), Expect = 7.1e-29, Sum P(3) = 7.1e-29
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + Q +I+VATPGRL D G L + L LV+DE DRLL ++A
Sbjct: 125 EDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEAS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 185 INTILEFLPKQRRTGLFSATQT 206
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 227 (85.0 bits), Expect = 8.1e-29, Sum P(3) = 8.1e-29
Identities = 56/179 (31%), Positives = 95/179 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+T++ KL + L+ P F+ ++Y + L+ + + K YLV +L+
Sbjct: 184 LLFSATMTKNLTKLDSIALNKP-FIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKK 242
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
IVF ++ + + +LN + + +S L ++S R LK F+ GK++VL
Sbjct: 243 HEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSL--HSFLDQKS-RLAALKTFKSGKVKVL 299
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
V++D +RG+D+ V V+NY K YIHR GRTAR G+ GR + + +V K
Sbjct: 300 VATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIK 358
Score = 103 (41.3 bits), Expect = 8.1e-29, Sum P(3) = 8.1e-29
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
I+VATPGRL H+N L+ +LV+DE DRLL E ++ + ++L+
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILE 173
Score = 103 (41.3 bits), Expect = 8.1e-29, Sum P(3) = 8.1e-29
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
TI L RD+ ++ TGSGKT S+A+PI+ LS A+++ PTR+LA+Q+
Sbjct: 34 TIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVF-AVILTPTRELAVQI 88
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 483 VKRFKKLLQKADNDSCPIHSI--PSSLIESLRPVYKSGDV 520
V+ K +L K D S +HS S + +L+ +KSG V
Sbjct: 258 VEAVKGMLNKLDIPSVSLHSFLDQKSRLAALK-TFKSGKV 296
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 228 (85.3 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 57/186 (30%), Positives = 98/186 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 367
M+ SAT+ L + L++PL + G++ KL + + +Y +I +S + + L+
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344
Query: 368 SLGEE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ KCIVFT + RL L K + G QS R +TL FR+G
Sbjct: 345 EHAKGGKCIVFTQTKRDADRLSYALAR----SFKCEALHGDISQSQRERTLAGFRDGHFN 400
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+DV V+ +++Y+ P +T++HR GRT RAG+ G + +D+ R
Sbjct: 401 ILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQ-SRA 459
Query: 487 KKLLQK 492
K++++
Sbjct: 460 VKIIER 465
Score = 124 (48.7 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P + AL + GI LFP+Q AV + P + RD+ + TG+GKTL++ +PI+ +
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166
Query: 95 SNRAVRCLRA-----LVVLPTRDLALQV 117
+ R LV+ PTR+LA QV
Sbjct: 167 IKYNAKHGRGRNPLCLVLAPTRELARQV 194
Score = 86 (35.3 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
+++L VD+ V TPGR++D + RG L + ++V+DE D++L+ + + +L+
Sbjct: 220 MRQLDYGVDVAVGTPGRVIDLMK--RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEK 277
Query: 264 TRSDNENRFSDASTFLPSAFGSL 286
++ A+ +PS SL
Sbjct: 278 LPEKRQSMMFSAT--MPSWIRSL 298
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 209 (78.6 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 59/211 (27%), Positives = 100/211 (47%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353
+ R K P R ++ SAT +++ +L LH P + R R+
Sbjct: 181 IRRILKLLPESRQ-NLLFSATFSKEIKELTDKLLHSPALIEVAR-RNTAAARITHVVHPV 238
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
+ + K L ++ S + +VFT + +RL L G + G + Q+ R
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDG---LSSAAIHGNKSQAAR 295
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
+ L F++GKI+VLV++D RG+D++ + +V+N++ P K Y+HR GRT RA G
Sbjct: 296 MRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGV 355
Query: 474 CFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 504
+L+ DEV+ + + +K P IP
Sbjct: 356 AISLVSGDEVRLLRDI-EKLLQSKMPQEVIP 385
Score = 115 (45.5 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 188 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETD 246
+K + G+ P+ + L+ VDILVATPGRL+D +N +G L + + V+DE D
Sbjct: 115 LKATVVHGGVSIKPQ--INHLRRGVDILVATPGRLLDLVN--QGVLNLSRVEFFVLDEAD 170
Query: 247 RLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
R+L + + +L+L +N A TF
Sbjct: 171 RMLDMGFLPDIRRILKLLPESRQNLLFSA-TF 201
Score = 105 (42.0 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G PVQ ++ I L RD+ + + TG+GKT + LP++Q L
Sbjct: 17 LSAELLRAIREQGYVEPTPVQ----RQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRL 72
Query: 95 S------NRAVR-CLRALVVLPTRDLALQV 117
R+ + +RAL++ PTR+LA+QV
Sbjct: 73 FVSRPPLQRSAKPVIRALILTPTRELAVQV 102
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 209 (78.6 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 59/211 (27%), Positives = 100/211 (47%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353
+ R K P R ++ SAT +++ +L LH P + R R+
Sbjct: 181 IRRILKLLPESRQ-NLLFSATFSKEIKELTDKLLHSPALIEVAR-RNTAAARITHVVHPV 238
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
+ + K L ++ S + +VFT + +RL L G + G + Q+ R
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDG---LSSAAIHGNKSQAAR 295
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
+ L F++GKI+VLV++D RG+D++ + +V+N++ P K Y+HR GRT RA G
Sbjct: 296 MRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGV 355
Query: 474 CFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 504
+L+ DEV+ + + +K P IP
Sbjct: 356 AISLVSGDEVRLLRDI-EKLLQSKMPQEVIP 385
Score = 115 (45.5 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 188 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETD 246
+K + G+ P+ + L+ VDILVATPGRL+D +N +G L + + V+DE D
Sbjct: 115 LKATVVHGGVSIKPQ--INHLRRGVDILVATPGRLLDLVN--QGVLNLSRVEFFVLDEAD 170
Query: 247 RLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
R+L + + +L+L +N A TF
Sbjct: 171 RMLDMGFLPDIRRILKLLPESRQNLLFSA-TF 201
Score = 105 (42.0 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G PVQ ++ I L RD+ + + TG+GKT + LP++Q L
Sbjct: 17 LSAELLRAIREQGYVEPTPVQ----RQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRL 72
Query: 95 S------NRAVR-CLRALVVLPTRDLALQV 117
R+ + +RAL++ PTR+LA+QV
Sbjct: 73 FVSRPPLQRSAKPVIRALILTPTRELAVQV 102
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 224 (83.9 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 60/198 (30%), Positives = 95/198 (47%)
Query: 304 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 363
P++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 346 PKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAM 404
Query: 364 ALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422
L G +VF S+E L L + G + + + Q+Q R T+ +FR
Sbjct: 405 RELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRA 461
Query: 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482
GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 462 GKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDD 521
Query: 483 VKRFKKLLQKADNDSCPI 500
+ + CP+
Sbjct: 522 KPLLRSVANVIQQAGCPV 539
Score = 144 (55.7 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 37/101 (36%), Positives = 59/101 (58%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ LD + PRL LQN+ + + F V + + I L R+L ++P
Sbjct: 158 PDPIATFQQ--LDQEYKISPRL---LQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAP 211
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
TGSGKTL++++PI+ L + RALV+ PTR+LA Q++
Sbjct: 212 TGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIH 252
Score = 69 (29.3 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 268
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 288 DILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPK 347
Query: 269 ENRFSDASTF 278
R ++TF
Sbjct: 348 VRRAMFSATF 357
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 226 (84.6 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 60/198 (30%), Positives = 96/198 (48%)
Query: 304 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 363
P++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 346 PKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIG-ARNSAVETVEQELLFVGSETGKLLAM 404
Query: 364 ALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422
L G + +VF S+E L L + G + + + Q+Q R T+ +FR
Sbjct: 405 RELVKKGFKPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRA 461
Query: 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482
GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 462 GKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDD 521
Query: 483 VKRFKKLLQKADNDSCPI 500
+ + CP+
Sbjct: 522 KPLLRSVANVIQQAGCPV 539
Score = 138 (53.6 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F V + + I L R+L ++PTGSGKTL
Sbjct: 160 PIATFQQLDQEYKINSRLLQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTL 218
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
++++PI+ L + RALV+ PTR+LA Q++
Sbjct: 219 AFSIPILMQLKQPTNKGFRALVISPTRELASQIH 252
Score = 72 (30.4 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 268
DILV TP RL+ + G L ++ +LVVDE+D+L + ++ L ++ S
Sbjct: 288 DILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPK 347
Query: 269 ENRFSDASTF 278
R ++TF
Sbjct: 348 VRRAMFSATF 357
Score = 41 (19.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 177 QSSIADEISELIKRPKLEAGICYDPEDVLQE 207
Q ++ + ++IK+P IC P+ L++
Sbjct: 547 QKLLSKQKKKMIKKPLERESICTTPKYFLEQ 577
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 214 (80.4 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 54/176 (30%), Positives = 96/176 (54%)
Query: 309 MVLSATLTQDPNKL-AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 367
M+ SATL +L A+ L+ P+FL + +R + + L ++ K LV L+
Sbjct: 194 MLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 253
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
G E+ +VF + E+ L L + E + G Q R+K ++ F++G+++V
Sbjct: 254 QEGVERTVVFANKRETVQYLSGKL--YAE-ELPCVWLEGKMPQDKRNKAIERFKKGEVKV 310
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
LV++D RG+D++ +++V+N+D P + YIHR GRT RAG+ G +L+ ++
Sbjct: 311 LVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDM 366
Score = 107 (42.7 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 171 VGLAVGQSSIADEISEL--IKRPKLEAGICYDPE-DVLQELQSAVDILVATPGRLMDHIN 227
+ + +G+ S ++++EL IK + G+ Y D+L S DILVATPGRL+++I
Sbjct: 97 LAIQIGEDS--EQLTELTKIKTGVITGGVNYGSHADILT---STTDILVATPGRLLEYIE 151
Query: 228 ATRGFTLEHLCYLVVDETDRLL 249
+ F + LV+DE DR+L
Sbjct: 152 NEQ-FDAREIEILVLDEADRML 172
Score = 106 (42.4 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQT 93
LD L ++ +G + P + QE + P + +D+ ++PTG+GKT ++ LPI Q
Sbjct: 20 LDSELLASINKIGYTK--PTSI---QELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 94 LSN--RAVRCL-RALVVLPTRDLALQV 117
L + R R L++ PTR+LA+Q+
Sbjct: 75 LLDYPRTKPGFPRVLILTPTRELAIQI 101
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 195 (73.7 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 46/129 (35%), Positives = 68/129 (52%)
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
+ K K L L+ S ++ +VFT + + + L L G IK +G + Q R
Sbjct: 234 DKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDG---IKAVSINGDKSQGAR 290
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
K L F+ GK++ L+++D RG+D+ + VVNYD P + Y+HR GRT RAG G
Sbjct: 291 QKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGL 350
Query: 474 CFTLLHKDE 482
+LL DE
Sbjct: 351 AVSLLSHDE 359
Score = 125 (49.1 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 38/120 (31%), Positives = 62/120 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL L +GI++ P+Q Q+ I L +D+ + TG+GKT ++ LP++Q
Sbjct: 13 LDSRLLNTLSELGIANPTPIQ----QQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 95 SNRA------VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSL 148
+ + +RALV++PTR+LA QV + Y ++A + M VQ + L
Sbjct: 69 IEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL 128
Score = 108 (43.1 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
L L+ VDIL+ATPGRL+DH + F L + LV+DE DR+L + L VL+
Sbjct: 125 LNHLRGGVDILIATPGRLLDHAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRVLRRL 183
Query: 265 RSDNENRFSDASTF 278
+ F A TF
Sbjct: 184 SPLRQTLFFSA-TF 196
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 195 (73.7 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 46/129 (35%), Positives = 68/129 (52%)
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
+ K K L L+ S ++ +VFT + + + L L G IK +G + Q R
Sbjct: 234 DKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDG---IKAVSINGDKSQGAR 290
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
K L F+ GK++ L+++D RG+D+ + VVNYD P + Y+HR GRT RAG G
Sbjct: 291 QKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGL 350
Query: 474 CFTLLHKDE 482
+LL DE
Sbjct: 351 AVSLLSHDE 359
Score = 125 (49.1 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 38/120 (31%), Positives = 62/120 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL L +GI++ P+Q Q+ I L +D+ + TG+GKT ++ LP++Q
Sbjct: 13 LDSRLLNTLSELGIANPTPIQ----QQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 95 SNRA------VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSL 148
+ + +RALV++PTR+LA QV + Y ++A + M VQ + L
Sbjct: 69 IEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL 128
Score = 108 (43.1 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
L L+ VDIL+ATPGRL+DH + F L + LV+DE DR+L + L VL+
Sbjct: 125 LNHLRGGVDILIATPGRLLDHAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRVLRRL 183
Query: 265 RSDNENRFSDASTF 278
+ F A TF
Sbjct: 184 SPLRQTLFFSA-TF 196
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 214 (80.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 62/215 (28%), Positives = 110/215 (51%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYK 350
VE + P R+ M+ SATL +D +L++ ++ P + G T K+ L ++
Sbjct: 167 VEAIIDELPTKRMT-MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTL--FE 223
Query: 351 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410
+ E KL L V +++ + CI+F + E+ + L+ KI + G+ ++
Sbjct: 224 VREEEKLSLLKDVTTIEN--PDSCIIFCRTQENVDHVYRQLDRVNYPCDKI--HGGMVQE 279
Query: 411 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 470
R + FR+GK + LV++D RG+D++ + +V+NYD P ++Y+HR GRT RAG
Sbjct: 280 D-RFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGN 338
Query: 471 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 505
G+ T + E RF + ++ + P + PS
Sbjct: 339 SGKAITFITPYE-DRFLEEIEAYIGFAIPKANAPS 372
Score = 109 (43.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ AL +G P +V E I L ++DL + S TGSGKT S+ +P+ + +
Sbjct: 11 LSKEVRRALTGLGYEH--PTEVQ--GEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMV 66
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
+ +ALV+ PTR+LA+QV
Sbjct: 67 EWEENKP-QALVLTPTRELAVQV 88
Score = 106 (42.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 180 IADEISELIKRPKLEAGICYDPEDVLQ---ELQSAVDILVATPGRLMDHINATRG-FTLE 235
+ ++I+ + + +++A Y + EL+ I+V TPGR++DHI +G +LE
Sbjct: 88 VKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHIE--KGTLSLE 145
Query: 236 HLCYLVVDETDRLLREAY 253
L YLV+DE D +L +
Sbjct: 146 RLKYLVIDEADEMLNMGF 163
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 214 (80.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 62/215 (28%), Positives = 110/215 (51%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYK 350
VE + P R+ M+ SATL +D +L++ ++ P + G T K+ L ++
Sbjct: 167 VEAIIDELPTKRMT-MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTL--FE 223
Query: 351 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410
+ E KL L V +++ + CI+F + E+ + L+ KI + G+ ++
Sbjct: 224 VREEEKLSLLKDVTTIEN--PDSCIIFCRTQENVDHVYRQLDRVNYPCDKI--HGGMVQE 279
Query: 411 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 470
R + FR+GK + LV++D RG+D++ + +V+NYD P ++Y+HR GRT RAG
Sbjct: 280 D-RFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGN 338
Query: 471 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 505
G+ T + E RF + ++ + P + PS
Sbjct: 339 SGKAITFITPYE-DRFLEEIEAYIGFAIPKANAPS 372
Score = 109 (43.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ AL +G P +V E I L ++DL + S TGSGKT S+ +P+ + +
Sbjct: 11 LSKEVRRALTGLGYEH--PTEVQ--GEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMV 66
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
+ +ALV+ PTR+LA+QV
Sbjct: 67 EWEENKP-QALVLTPTRELAVQV 88
Score = 106 (42.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 180 IADEISELIKRPKLEAGICYDPEDVLQ---ELQSAVDILVATPGRLMDHINATRG-FTLE 235
+ ++I+ + + +++A Y + EL+ I+V TPGR++DHI +G +LE
Sbjct: 88 VKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHIE--KGTLSLE 145
Query: 236 HLCYLVVDETDRLLREAY 253
L YLV+DE D +L +
Sbjct: 146 RLKYLVIDEADEMLNMGF 163
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 213 (80.0 bits), Expect = 2.5e-28, Sum P(3) = 2.5e-28
Identities = 60/200 (30%), Positives = 98/200 (49%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 317
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPME- 376
Query: 484 KRFKKLLQKADNDSCPIHSI 503
+ + L+ N CP+ +
Sbjct: 377 ESYVTFLEI--NQKCPLQEM 394
Score = 125 (49.1 bits), Expect = 2.5e-28, Sum P(3) = 2.5e-28
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPTQLHPQVLGALGQLGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVN 118
PI++ L R + + A+++ PTR+LA+QV+
Sbjct: 66 PILEILLRREEKLKKNQVGAIIITPTRELAIQVD 99
Score = 91 (37.1 bits), Expect = 2.5e-28, Sum P(3) = 2.5e-28
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
+DV + + +I+VATPGRL D G L + L LV+DE DRLL ++A
Sbjct: 125 DDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEAS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 185 INTILEFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 211 (79.3 bits), Expect = 3.2e-28, Sum P(3) = 3.2e-28
Identities = 58/214 (27%), Positives = 111/214 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + + +LA+ +++P+ ++ +E + K KP LV L++
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPAN-STARTVEQCIYPADVKKKPDMLVKLVKE 240
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
++ +VF + +RL T LN G I G + Q R++ L F+ G++++L
Sbjct: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH---GNKSQGARTRALADFKAGEVRIL 297
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE------ 482
V++D RG+D+ + VVN++ P + Y+HR GRT RAG++G+ +L+ E
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
Query: 483 VKRFKKLLQKADNDSC--PIHSIPSSLIESLRPV 514
++R + L N + P + +P S +++ RP+
Sbjct: 358 IERLTQALLPRVNLAGFEPTNQLPESKLDT-RPL 390
Score = 108 (43.1 bits), Expect = 3.2e-28, Sum P(3) = 3.2e-28
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK A++ G ++ P+Q+ + I L +D+ + TG+GKT + LPI++ L+
Sbjct: 11 PILK-AIEEKGYNTPSPIQL----QAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK 65
Query: 97 RA-VRC--LRALVVLPTRDLALQV 117
VR +RAL++ PTR+LA Q+
Sbjct: 66 GPKVRANQVRALILTPTRELAAQI 89
Score = 107 (42.7 bits), Expect = 3.2e-28, Sum P(3) = 3.2e-28
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 188 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 247
+K + G+ +P+ +Q + DILVATPGRLMD N + L LV+DE DR
Sbjct: 102 LKSAVVFGGVKINPQ--MQRMCKGADILVATPGRLMDLYNQN-AVKFDQLEILVLDEADR 158
Query: 248 LLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
+L + + +L+L +N A TF
Sbjct: 159 MLDMGFIRDIHKILKLLPEKRQNLLFSA-TF 188
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 211 (79.3 bits), Expect = 3.2e-28, Sum P(3) = 3.2e-28
Identities = 58/214 (27%), Positives = 111/214 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + + +LA+ +++P+ ++ +E + K KP LV L++
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPAN-STARTVEQCIYPADVKKKPDMLVKLVKE 240
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
++ +VF + +RL T LN G I G + Q R++ L F+ G++++L
Sbjct: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH---GNKSQGARTRALADFKAGEVRIL 297
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE------ 482
V++D RG+D+ + VVN++ P + Y+HR GRT RAG++G+ +L+ E
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
Query: 483 VKRFKKLLQKADNDSC--PIHSIPSSLIESLRPV 514
++R + L N + P + +P S +++ RP+
Sbjct: 358 IERLTQALLPRVNLAGFEPTNQLPESKLDT-RPL 390
Score = 108 (43.1 bits), Expect = 3.2e-28, Sum P(3) = 3.2e-28
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK A++ G ++ P+Q+ + I L +D+ + TG+GKT + LPI++ L+
Sbjct: 11 PILK-AIEEKGYNTPSPIQL----QAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK 65
Query: 97 RA-VRC--LRALVVLPTRDLALQV 117
VR +RAL++ PTR+LA Q+
Sbjct: 66 GPKVRANQVRALILTPTRELAAQI 89
Score = 107 (42.7 bits), Expect = 3.2e-28, Sum P(3) = 3.2e-28
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 188 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 247
+K + G+ +P+ +Q + DILVATPGRLMD N + L LV+DE DR
Sbjct: 102 LKSAVVFGGVKINPQ--MQRMCKGADILVATPGRLMDLYNQN-AVKFDQLEILVLDEADR 158
Query: 248 LLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
+L + + +L+L +N A TF
Sbjct: 159 MLDMGFIRDIHKILKLLPEKRQNLLFSA-TF 188
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 220 (82.5 bits), Expect = 3.4e-28, Sum P(3) = 3.4e-28
Identities = 59/194 (30%), Positives = 92/194 (47%)
Query: 308 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 367
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 241 RAMFSATFAYDVEQWCKLNLDNVISVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 299
Query: 368 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 300 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRAGKIW 356
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 357 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 416
Query: 487 KKLLQKADNDSCPI 500
+ + CP+
Sbjct: 417 RSVANVIQQAGCPV 430
Score = 138 (53.6 bits), Expect = 3.4e-28, Sum P(3) = 3.4e-28
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 51 PIATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 109
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
++++PI+ L A + RAL++ PTR+LA Q++
Sbjct: 110 AFSIPILMQLKQPANKGFRALIISPTRELASQIH 143
Score = 69 (29.3 bits), Expect = 3.4e-28, Sum P(3) = 3.4e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 268
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 179 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 238
Query: 269 ENRFSDASTF 278
R ++TF
Sbjct: 239 VRRAMFSATF 248
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 234 (87.4 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
Identities = 69/220 (31%), Positives = 115/220 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 366
++ SAT ++D LA LH+P + +T T ER+E + K L L+
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTV---ERIEQRVFRLPASHKRALLAHLI 244
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ E+ +VFT + +RL L+ G + I G + Q+ R+K L F+ G+++
Sbjct: 245 TAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIH---GNKSQNARTKALADFKAGEVR 301
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
+LV++D RG+D++ + +VVN++ P + Y+HR GRT RAG+ G +L+ DE K
Sbjct: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
Query: 487 KKL----LQK-ADNDSCPIHSIPSSLIESLRP-VYKSGDV 520
K + QK AD D + +S +E+ +P V + DV
Sbjct: 362 KSIERMTKQKIADGD---LMGFDASAVEAEKPEVRERPDV 398
Score = 101 (40.6 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G + PVQ Q I L RDL + + TG+GKT +ALPI++ L
Sbjct: 8 LSEALVGAIEAAGYTQPTPVQ----QRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERL 63
Query: 95 --------SNR-AVRCLRALVVLPTRDLALQVNSA 120
S R R R LV+ PTR+LA QV+ +
Sbjct: 64 FPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDS 98
Score = 96 (38.9 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G+ +P+ +Q + VD+LVA PGRL+D + L H+ LV+DE DR+L +
Sbjct: 116 GVGMNPQ--VQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVH 172
Query: 256 WLPTVLQLTRSDNENRFSDASTF 278
+ VL + +N A TF
Sbjct: 173 DVKKVLARLPAKRQNLLFSA-TF 194
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 225 (84.3 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 54/208 (25%), Positives = 110/208 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + + +LA+ ++HP+ ++ R ++ + + K L+ L++
Sbjct: 182 LMFSATFSDEIRELAKGLVNHPVEISV-TPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
++ +VF+ + +RL L + I G + Q R+K L F+ G+++VL
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSLI---QAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK- 487
V++D RG+D++ + VVN+D P + Y+HR GRT RAG G+ +L+ +E+K K
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357
Query: 488 ------KLLQKADNDS-CPIHSIPSSLI 508
++L++ + + P+H++P + +
Sbjct: 358 IERLINRVLERQEVEGFSPVHALPETTL 385
Score = 105 (42.0 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAY 253
G+ +P+ + +L+ VD+LVATPGRL+D + NA + LE LV+DE DR+L +
Sbjct: 110 GVPINPQ--INKLRHGVDVLVATPGRLLDLVQQNAVKFNQLE---ILVLDEADRMLDMGF 164
Query: 254 QAWLPTVLQLTRSDNENRFSDASTF 278
+ +L L + +N A TF
Sbjct: 165 IRDIKKILALLPAKRQNLMFSA-TF 188
Score = 98 (39.6 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L+ A+ G + P+Q + I L +D+ + TG+GKT + LP+++ L
Sbjct: 8 LSAPLQKAVSEQGYDTPSPIQA----QAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELL 63
Query: 95 S--NRAVRC-LRALVVLPTRDLALQVNSA 120
+ ++A RALV+ PTR+LA QV +
Sbjct: 64 AKGHKAKSGQTRALVLTPTRELAAQVGES 92
Score = 41 (19.5 bits), Expect = 6.5e-08, Sum P(3) = 6.5e-08
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 400 KIKEYSGLQRQSVRSKTLKAFREGKIQ 426
K K +SG Q++S ++ K+ +G+ Q
Sbjct: 475 KAKPHSGAQQRSHAERSEKSNNDGRRQ 501
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 220 (82.5 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 59/197 (29%), Positives = 94/197 (47%)
Query: 305 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 364
++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 254 KVKRAMFSATFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMR 312
Query: 365 LLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L G +VF S+E L L + G + + + Q+Q R T+ +FR G
Sbjct: 313 ELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAG 369
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
KI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 370 KIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDK 429
Query: 484 KRFKKLLQKADNDSCPI 500
+ + CP+
Sbjct: 430 PLLRSVANVIQQAGCPV 446
Score = 138 (53.6 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 28 PLDHLPCLDPRLKVA---LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K++ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 67 PITTFQQLDQEYKISSRLLQNI-LDAGFQLPTPIQMQAIPVMLHGRELLASAPTGSGKTL 125
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
++++PI+ L + RALV+ PTR+LA Q++
Sbjct: 126 AFSIPILMQLKQPTNKGFRALVISPTRELASQIH 159
Score = 69 (29.3 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 268
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 195 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 254
Query: 269 ENRFSDASTF 278
R ++TF
Sbjct: 255 VKRAMFSATF 264
Score = 39 (18.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 177 QSSIADEISELIKRPKLEAGICYDPEDVLQE 207
Q ++ + +IK+P IC P+ L++
Sbjct: 454 QKLLSKQKKRMIKKPLERESICTTPKYFLEK 484
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 195 (73.7 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 56/191 (29%), Positives = 90/191 (47%)
Query: 302 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 361
P R V M+ SAT Q +H P + E L + Y + K K
Sbjct: 214 PKERQV-MLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG--VTQYYAFVQEKQKVHC 270
Query: 362 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421
L L + L + I+F +S + L + G I +S + Q+ R++ FR
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYI--HSKMA-QNHRNRVFHDFR 327
Query: 422 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 481
+G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ +
Sbjct: 328 QGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYE 387
Query: 482 EVKRFKKLLQK 492
+ +++ Q+
Sbjct: 388 DRHTLRRIEQE 398
Score = 123 (48.4 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 30/96 (31%), Positives = 54/96 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + G P+Q A +IG L +D+ + G+GKT +Y +P+++
Sbjct: 49 CLGRDLLMGIFEKGWEKPSPIQEA----SIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129
+ A++ ++A+V++PTR+LALQ + C K+I
Sbjct: 105 IQP-ALKAIQAMVIVPTRELALQTSQI-CVELSKHI 138
Score = 107 (42.7 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 173 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 232
LA+ S I E+S+ I+ + D D + L V +++ATPGR++D + +G
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGV 180
Query: 233 T-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 269
+EH LV+DE D+LL + +Q L ++ + +
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 218
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 195 (73.7 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 56/191 (29%), Positives = 90/191 (47%)
Query: 302 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 361
P R V M+ SAT Q +H P + E L + Y + K K
Sbjct: 214 PKERQV-MLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG--VTQYYAFVQEKQKVHC 270
Query: 362 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421
L L + L + I+F +S + L + G I +S + Q+ R++ FR
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYI--HSKMA-QNHRNRVFHDFR 327
Query: 422 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 481
+G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ +
Sbjct: 328 QGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYE 387
Query: 482 EVKRFKKLLQK 492
+ +++ Q+
Sbjct: 388 DRHTLRRIEQE 398
Score = 123 (48.4 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 30/96 (31%), Positives = 54/96 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + G P+Q A +IG L +D+ + G+GKT +Y +P+++
Sbjct: 49 CLGRDLLMGIFEKGWEKPSPIQEA----SIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129
+ A++ ++A+V++PTR+LALQ + C K+I
Sbjct: 105 IQP-ALKAIQAMVIVPTRELALQTSQI-CVELSKHI 138
Score = 107 (42.7 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 173 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 232
LA+ S I E+S+ I+ + D D + L V +++ATPGR++D + +G
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGV 180
Query: 233 T-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 269
+EH LV+DE D+LL + +Q L ++ + +
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 218
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 214 (80.4 bits), Expect = 6.8e-28, Sum P(3) = 6.8e-28
Identities = 66/215 (30%), Positives = 99/215 (46%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E K P RLE+Y +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L+ +EK +VF S+ L + ++KI G + R+K FR
Sbjct: 260 HFLRQHKQEKHLVFFSTCACVEYYGKALESLIK-QVKIMCIHGKMKHK-RNKIFTEFRRL 317
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+LV +D M RG+D+ V+ V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 AGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPMEE 377
Query: 484 KRFKKLLQKADNDSCPIHSI-PSSLIESLRPVYKS 517
L + N CP+ + P + L P KS
Sbjct: 378 SYINFL---SINQKCPMQEMQPQRNVLDLLPKLKS 409
Score = 135 (52.6 bits), Expect = 6.8e-28, Sum P(3) = 6.8e-28
Identities = 33/92 (35%), Positives = 56/92 (60%)
Query: 32 LPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L P + +ALQ++G + PVQ A TI + +D+ + TGSGKTL++ +PI
Sbjct: 12 LPVPLSPGVLLALQDLGFDRMTPVQSA----TIPLFMSNKDVAAEAVTGSGKTLAFVIPI 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVN 118
++ L R + + A+++ PTR+LA+Q++
Sbjct: 68 LEILLRREEKLKKMQVGAIIITPTRELAIQID 99
Score = 81 (33.6 bits), Expect = 6.8e-28, Sum P(3) = 6.8e-28
Identities = 29/82 (35%), Positives = 40/82 (48%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + + +I+VATPGRL D G L + L LV+DE DRLL +++
Sbjct: 125 EDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
L +L L + FS T
Sbjct: 185 LNAILAFLPKQRRTGLFSATQT 206
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 229 (85.7 bits), Expect = 7.0e-28, Sum P(3) = 7.0e-28
Identities = 68/208 (32%), Positives = 103/208 (49%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ KL + L +P+ +T E + K P +L +Y +C ++ K LV
Sbjct: 200 LFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFNTLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYS-----GLQRQSVRSKTL 417
A L+ EK +VF S+ C + +FG+ L + +K S G + R+K
Sbjct: 260 AFLRQHKHEKQLVFFST-------CACVEYFGKALEVLVKNVSIHCIHGKMKHK-RNKIF 311
Query: 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477
FR K +LV +D M RG+D+ VN V+ YD P+ +++HR GRTAR G G
Sbjct: 312 ADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVF 371
Query: 478 LHKDEVKRFKKLLQKADNDSCPIHSIPS 505
L E + + L + N CP+ S S
Sbjct: 372 LLPME-ESYVNFL--SINQKCPLQSFSS 396
Score = 109 (43.4 bits), Expect = 7.0e-28, Sum P(3) = 7.0e-28
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 32 LPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L + L+ +G + + PVQ A I + +D+ + TGSGKTL++ +P
Sbjct: 12 LPVKLHDNILQTLKELGFTYMTPVQSAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPA 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVNSARCKY 124
++ L R + + AL++ PTR+LA+Q++ ++
Sbjct: 68 LEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRF 105
Score = 90 (36.7 bits), Expect = 7.0e-28, Sum P(3) = 7.0e-28
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + +I++ATPGRL D G L + L LV+DE DRLL ++A
Sbjct: 125 EDVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEAS 184
Query: 257 LPTVL-QLTRSDNENRFSDAST 277
L T+L L + FS T
Sbjct: 185 LNTILGYLPKQRRTGLFSATQT 206
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 213 (80.0 bits), Expect = 9.8e-28, Sum P(3) = 9.8e-28
Identities = 60/200 (30%), Positives = 98/200 (49%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 317
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPME- 376
Query: 484 KRFKKLLQKADNDSCPIHSI 503
+ + L+ N CP+ +
Sbjct: 377 ESYVTFLEI--NQKCPLQEM 394
Score = 125 (49.1 bits), Expect = 9.8e-28, Sum P(3) = 9.8e-28
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPTQLHPQVLGALGQLGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVN 118
PI++ L R + + A+++ PTR+LA+QV+
Sbjct: 66 PILEILLRREEKLKKNQVGAIIITPTRELAIQVD 99
Score = 91 (37.1 bits), Expect = 9.8e-28, Sum P(3) = 9.8e-28
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
+DV + + +I+VATPGRL D G L + L LV+DE DRLL ++A
Sbjct: 125 DDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEAS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 185 INTILEFLPKQRRTGLFSATQT 206
Score = 37 (18.1 bits), Expect = 8.5e-09, Sum P(3) = 8.5e-09
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 450
++ LK F++GKI + + +G+ G V D
Sbjct: 557 TRLLKKFKKGKI----TEEEFEKGLFSSGKGTVTTAD 589
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 233 (87.1 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 70/207 (33%), Positives = 102/207 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 367
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 425
S ++K IVF SS + L + F LR + I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 486 FKKLLQKADNDSCPIHSI---PSSLIE 509
++LLQK P+ I P LI+
Sbjct: 427 VQQLLQK----KVPVKEIKINPEKLID 449
Score = 106 (42.4 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 189 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 246
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 225
Query: 247 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 277
R+L + + V++ L + FS T
Sbjct: 226 RILDMGFADTMNAVIENLPKKRQTLLFSATQT 257
Score = 94 (38.1 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQ 116
Q
Sbjct: 155 YQ 156
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 220 (82.5 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 59/194 (30%), Positives = 92/194 (47%)
Query: 308 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 367
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 349 RAMFSATFAYDVEQWCKLNLDNVISVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 407
Query: 368 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 408 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRAGKIW 464
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 465 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 524
Query: 487 KKLLQKADNDSCPI 500
+ + CP+
Sbjct: 525 RSVANVIQQAGCPV 538
Score = 138 (53.6 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 159 PIATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 217
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
++++PI+ L A + RAL++ PTR+LA Q++
Sbjct: 218 AFSIPILMQLKQPANKGFRALIISPTRELASQIH 251
Score = 69 (29.3 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 268
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 287 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 346
Query: 269 ENRFSDASTF 278
R ++TF
Sbjct: 347 VRRAMFSATF 356
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 214 (80.4 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 66/215 (30%), Positives = 99/215 (46%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E K P RLE+Y +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L+ +EK +VF S+ L + ++KI G + R+K FR
Sbjct: 260 HFLRQHKQEKHLVFFSTCACVEYYGKALESLIK-QVKIMCIHGKMKHK-RNKIFTEFRRL 317
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+LV +D M RG+D+ V+ V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 AGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPMEE 377
Query: 484 KRFKKLLQKADNDSCPIHSI-PSSLIESLRPVYKS 517
L + N CP+ + P + L P KS
Sbjct: 378 SYINFL---SINQKCPMQEMQPQRNVLDLLPKLKS 409
Score = 132 (51.5 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 32 LP-CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L P + ALQ++G + PVQ A TI + +D+ + TGSGKTL++ +PI
Sbjct: 12 LPVALSPGVLRALQDLGFDRMTPVQSA----TIPLFMSNKDVAAEAVTGSGKTLAFVIPI 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVN 118
++ L R + + A+++ PTR+LA+Q++
Sbjct: 68 LEILLRREEKLKKMQVGAIIITPTRELAIQID 99
Score = 81 (33.6 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 29/82 (35%), Positives = 40/82 (48%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + + +I+VATPGRL D G L + L LV+DE DRLL +++
Sbjct: 125 EDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
L +L L + FS T
Sbjct: 185 LNAILAFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 233 (87.1 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 70/207 (33%), Positives = 102/207 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 367
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 425
S ++K IVF SS + L + F LR + I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 486 FKKLLQKADNDSCPIHSI---PSSLIE 509
++LLQK P+ I P LI+
Sbjct: 427 VQQLLQK----KVPVKEIKINPEKLID 449
Score = 106 (42.4 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 189 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 246
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 225
Query: 247 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 277
R+L + + V++ L + FS T
Sbjct: 226 RILDMGFADTMNAVIENLPKKRQTLLFSATQT 257
Score = 94 (38.1 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQ 116
Q
Sbjct: 155 YQ 156
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 197 (74.4 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 58/188 (30%), Positives = 95/188 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALL 366
M+ SAT T+ LA++ L PL++ + + E LE ++C S+ + L L L
Sbjct: 343 MLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFL 402
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++K +VF SS S LLN+ + + + G Q+Q+ R+ T F
Sbjct: 403 KKNRKKKLMVFFSSCMSVKFHYELLNY---IDLPVMAIHGKQKQTKRTTTFFQFCNADSG 459
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVKR 485
+L+ +D RG+D+ V+ +V +D P K YIHR GRTAR G +L +E+
Sbjct: 460 ILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELG- 518
Query: 486 FKKLLQKA 493
F + L++A
Sbjct: 519 FLRFLKQA 526
Score = 140 (54.3 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
Q+L + V+ILVATPGRL+DH+ T GF ++L L++DE DR+L ++ L +++L
Sbjct: 278 QKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLP 337
Query: 266 SDNENR-FSDAST 277
++ FS T
Sbjct: 338 KKRQSMLFSATQT 350
Score = 93 (37.8 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLR 103
G+ + F + +TI P L RD+ + TGSGKTL++ +P ++ + R
Sbjct: 175 GVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGT 234
Query: 104 ALVVL-PTRDLALQ 116
++VL PTR+LA+Q
Sbjct: 235 GVIVLSPTRELAMQ 248
Score = 47 (21.6 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 155 QVKDVF--AAIAPAVGLSVGLAVGQSSIADEISELIKRPK 192
+VKDV + +A +V + Q S++DE++E ++PK
Sbjct: 37 EVKDVLDESEVASDSAPNV-IEEQQQSVSDEVNETSQKPK 75
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 215 (80.7 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 57/198 (28%), Positives = 96/198 (48%)
Query: 304 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYL 362
P + +++ SAT D + +L+L + + ++ G R E +E L S+ K L +
Sbjct: 347 PNVRRVLFSATFATDVERWCKLNLDNLVSVSIG-ARNSAAETVEQQLLFVGSENGKILAM 405
Query: 363 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422
L++ +VF S++ L L + G + + + Q+Q R + +FR
Sbjct: 406 RNLIKQGFLPPVLVFVQSIDRARELYHELVYEG-INVDVIHADRTQQQ--RDNVVSSFRS 462
Query: 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482
GKI VL+ + + RG+D +G+N V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 463 GKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDD 522
Query: 483 VKRFKKLLQKADNDSCPI 500
+ + CP+
Sbjct: 523 KPLLRSIATVIKKAGCPV 540
Score = 129 (50.5 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 31/101 (30%), Positives = 58/101 (57%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P V+ FE+ ++ LDPR+ ++ G + P+Q+ + + + +R++ +P
Sbjct: 159 PDPVTTFEELQKEY--DLDPRIIHNIKAAGFQTPTPIQM----QAVPLMMHKREILACAP 212
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
TGSGKT+++ LP++ L + RAL++ PTR+LA Q +
Sbjct: 213 TGSGKTMAFCLPLLAHLRQPLNKGFRALIISPTRELATQTH 253
Score = 82 (33.9 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 268
DILV TP RL+ +N L + +LVVDE+D+L + ++ L T+ S N
Sbjct: 289 DILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIFLACSSPN 348
Query: 269 ENRFSDASTF 278
R ++TF
Sbjct: 349 VRRVLFSATF 358
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 186 (70.5 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 54/201 (26%), Positives = 99/201 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + KLA + P ++ + + + + E + K L L+
Sbjct: 183 LLFSATFSSAVKKLANEMMIKPQVISA-DKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
++ +VFT++ ++ L LN G I + G + Q R + L+ F GK++VL
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDG---IPSEVVHGEKAQGSRRRALREFVSGKVRVL 298
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF-- 486
V+++ RG+D+ + VVN+D P + Y+HR GRT RAG+ G + + ++E +
Sbjct: 299 VATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLAD 358
Query: 487 -KKLL-QKADNDSCPIHSIPS 505
+KL+ QK + P + + S
Sbjct: 359 IEKLIGQKIRRITVPGYEVGS 379
Score = 127 (49.8 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
E Q+L+ DI+VATPGRL++H+ A +L + +LV+DE DR+L + A + +L
Sbjct: 115 ETQAQKLKRGADIIVATPGRLLEHLTACN-LSLSSVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 262 QLTRSDNENRFSDASTF 278
Q +N A TF
Sbjct: 174 QAVNKKRQNLLFSA-TF 189
Score = 108 (43.1 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLS 95
P + A+ + G + P+Q Q+ I P + +D+ ++ TG+GKT ++ALPI+Q +
Sbjct: 10 PEILRAISDCGYQKMTPIQ----QQAI-PAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64
Query: 96 NRAVRCL----RALVVLPTRDLALQV 117
L R L++ PTR+LA QV
Sbjct: 65 ENPSETLKSNTRVLILTPTRELAAQV 90
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 225 (84.3 bits), Expect = 3.6e-27, Sum P(3) = 3.6e-27
Identities = 60/186 (32%), Positives = 101/186 (54%)
Query: 309 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLES--YKLICESKLKPLYLVA 364
++ SAT + D LA LH+P + +T T ER+E ++L K L+A
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTV---ERIEQRVFRLAANHKRS---LLA 241
Query: 365 LLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L ++G E+ +VFT + +RL L+ G + I G + Q+ R+K L F+ G
Sbjct: 242 HLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIH---GNKSQNARTKALADFKAG 298
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
++++V++D RG+D++ + +VVN++ P + Y+HR GRT RAG+ G +L+ DE
Sbjct: 299 DVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
Query: 484 KRFKKL 489
K K +
Sbjct: 359 KLLKSI 364
Score = 101 (40.6 bits), Expect = 3.6e-27, Sum P(3) = 3.6e-27
Identities = 35/95 (36%), Positives = 48/95 (50%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G + PVQ Q I L RDL + + TG+GKT +ALPI++ L
Sbjct: 8 LSEALVRAIEAAGYTQPTPVQ----QRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERL 63
Query: 95 SNRAV---------RCLRALVVLPTRDLALQVNSA 120
V R R LV+ PTR+LA QV+ +
Sbjct: 64 FPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHES 98
Score = 97 (39.2 bits), Expect = 3.6e-27, Sum P(3) = 3.6e-27
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G+ +P+ +Q + VD+LVA PGRL+D + L H+ LV+DE DR+L +
Sbjct: 116 GVGMNPQ--VQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVH 172
Query: 256 WLPTVLQLTRSDNENRFSDASTF 278
+ VL + +N A TF
Sbjct: 173 DVKKVLARLPAKRQNLLFSA-TF 194
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 231 (86.4 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 72/208 (34%), Positives = 103/208 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 367
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 425
S ++K IVF SS + L + F LR I I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQMRRMEVYNEFVRKRS 366
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E K
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKG 426
Query: 486 F-KKLLQKADNDSCPIHSI---PSSLIE 509
++LLQK P+ I P LI+
Sbjct: 427 MVQQLLQK----KVPVKEIKINPEKLID 450
Score = 104 (41.7 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 189 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 246
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 247 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 277
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
Score = 94 (38.1 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQ 116
Q
Sbjct: 155 YQ 156
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 193 (73.0 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 59/203 (29%), Positives = 92/203 (45%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L L P + E L + Y + E + K L L
Sbjct: 273 LLYSATFPLSVQKFMTLHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 330
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 331 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 387
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 388 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 447
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PSS+ ++L
Sbjct: 448 IEEQLGTEIKPI---PSSIDKNL 467
Score = 129 (50.5 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 101 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + C++A+V++PTR+LALQV+ C K++ G
Sbjct: 157 LDLKK-DCIQAMVIVPTRELALQVSQI-CIQVSKHMGG 192
Score = 98 (39.6 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 175 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 231
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G ++H+ +V+DE D+LL + + + ++ +T N ++TF
Sbjct: 232 GVAKVDHIQMIVLDEADKLLSQDFMQIMEDII-MTLPKNRQILLYSATF 279
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 256 (95.2 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 65/177 (36%), Positives = 96/177 (54%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 192 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 250
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 251 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 307
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 476
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG RC++
Sbjct: 308 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG---RCWS 361
Score = 139 (54.0 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 199
Query: 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 200 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 248
Query: 334 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 392
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 249 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 306
Query: 393 HF 394
F
Sbjct: 307 KF 308
Score = 104 (41.7 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 102
Query: 113 LALQVN 118
LA Q++
Sbjct: 103 LAFQIS 108
Score = 46 (21.3 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 106 QISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 144
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 219 (82.2 bits), Expect = 6.8e-27, Sum P(3) = 6.8e-27
Identities = 59/197 (29%), Positives = 93/197 (47%)
Query: 305 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 364
++ + + SAT D + +L+L + ++ G R E +E L S+ L +
Sbjct: 344 KVKRAMFSATFAYDVEQWCRLNLDSVITVSVG-ARNSAVETVEQELLFVGSETGKLLAMR 402
Query: 365 LLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L G +VF S+E L L + G + + + Q+Q R T+ +FR G
Sbjct: 403 ELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAG 459
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
KI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 460 KIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDK 519
Query: 484 KRFKKLLQKADNDSCPI 500
+ + CP+
Sbjct: 520 PLLRSVANVIQQAGCPV 536
Score = 132 (51.5 bits), Expect = 6.8e-27, Sum P(3) = 6.8e-27
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + I L R+L ++PTGSGKTL
Sbjct: 157 PIATFQQLDQEYKINSRLLQNI-LDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTL 215
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
++++PI+ L + RAL++ PTR+LA Q++
Sbjct: 216 AFSIPILMHLKQPTNKGFRALIISPTRELASQIH 249
Score = 69 (29.3 bits), Expect = 6.8e-27, Sum P(3) = 6.8e-27
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 268
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 285 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 344
Query: 269 ENRFSDASTF 278
R ++TF
Sbjct: 345 VKRAMFSATF 354
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 219 (82.2 bits), Expect = 7.1e-27, Sum P(3) = 7.1e-27
Identities = 59/194 (30%), Positives = 92/194 (47%)
Query: 308 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 367
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 351 RAMFSATFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 409
Query: 368 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 410 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAGKIW 466
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 467 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 526
Query: 487 KKLLQKADNDSCPI 500
+ + CP+
Sbjct: 527 RSVANVIQQAGCPV 540
Score = 132 (51.5 bits), Expect = 7.1e-27, Sum P(3) = 7.1e-27
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + I L R+L ++PTGSGKTL
Sbjct: 161 PIATFQQLDQEYKINSRLLQNI-LDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTL 219
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
++++PI+ L + RAL++ PTR+LA Q++
Sbjct: 220 AFSIPILMQLKQPTNKGFRALIISPTRELANQIH 253
Score = 69 (29.3 bits), Expect = 7.1e-27, Sum P(3) = 7.1e-27
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 268
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 289 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 348
Query: 269 ENRFSDASTF 278
R ++TF
Sbjct: 349 VRRAMFSATF 358
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 225 (84.3 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQ 367
++LSAT+T + N L ++ P F G+ +RLE ++C +K YLV +++
Sbjct: 270 LLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVK 329
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ E+ T R C L + E L ++ Q R L AFR +Q
Sbjct: 330 NYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQ 389
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
V++ +D +RG+D+ V+ VVN++ P KTYIHR GR+ARAG+ G + + + +V+
Sbjct: 390 VIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELL 449
Query: 487 KKLLQ 491
+ + Q
Sbjct: 450 QAVEQ 454
Score = 108 (43.1 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
LQ M I + PVQ A P + E D+ + TG+GKTL++A+PI+Q LS
Sbjct: 104 LQTMQIKTATPVQAACI-----PKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYG- 157
Query: 102 LRALVVLPTRDLALQV 117
+ AL++ PTR+LA Q+
Sbjct: 158 IYALILTPTRELAFQI 173
Score = 84 (34.6 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 180 IADEISELIKRPKLEAGICYDPEDVL---QELQSAVDILVATPGRLMDHINA---TRGFT 233
IA++ + L K L+ + ++ +EL ++VATPGRL D I + T
Sbjct: 173 IAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKV 232
Query: 234 LEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
+ + + V+DE DR+L Y L + +
Sbjct: 233 FKKIQFFVLDEADRMLEGQYNDQLKPIFE 261
Score = 52 (23.4 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + F A+ + L + VG S+ + EL +RP
Sbjct: 172 QIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERP 208
>WB|WBGene00022792 [details] [associations]
symbol:ZK686.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141
EMBL:FO080431 PIR:D88511 PIR:S44912 RefSeq:NP_498690.2
ProteinModelPortal:P34668 SMR:P34668 STRING:P34668 PaxDb:P34668
PRIDE:P34668 EnsemblMetazoa:ZK686.2 GeneID:176088
KEGG:cel:CELE_ZK686.2 UCSC:ZK686.2 CTD:176088 WormBase:ZK686.2
HOGENOM:HOG000199518 InParanoid:P34668 OMA:KLMREEW NextBio:891060
Uniprot:P34668
Length = 593
Score = 247 (92.0 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 92/353 (26%), Positives = 164/353 (46%)
Query: 156 VKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY--------DPEDVL 205
V V AA+ P+ L + V ++ +I + KR E+G+ D E
Sbjct: 174 VLPVLAAVGSKPSKILQAVILVPVQTLVAQIVDEFKRWNDESGVAKVVSLSGANDFEKEA 233
Query: 206 QELQS-AVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
++L S +++VATP RL+ H+ + L L +L+VDE DR+ + + WL V
Sbjct: 234 RQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLRFLIVDEADRMGKLMREEWLDLVEF 293
Query: 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK-MVLSATLT--QD- 318
L R + + K + + + ++ L K + SAT +D
Sbjct: 294 LC--GGMERVACLKDIIRQRRAPQKIVLSATLSKDVEELHLWNLFKPRLFSATAVSVKDI 351
Query: 319 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 378
+ + Q+D H +G R LP + ++ + K PL + + + ++F
Sbjct: 352 TSGIPQVD-H-----VSG--RLALPSSISHRLVVTDPKFHPLAVYQQITRNKFNRTLIFV 403
Query: 379 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 438
+ V S++RL +L + + ++ ++ R K L+ F + + +VL+ SD + RG
Sbjct: 404 NEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRYKMLEKFNKNENRVLICSDVLARGT 463
Query: 439 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491
D+ V+ V+NY+ PA K ++HRAGRT RAGQ G ++ K+ + F K+L+
Sbjct: 464 DLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVISVGDKESKRLFVKMLK 516
Score = 129 (50.5 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 48 ISSLFPVQVAV-----WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
IS+ FPVQ AV ++ P L RD+ I +PTGSGKT+ Y LP++ + ++ + L
Sbjct: 130 ISTWFPVQYAVLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKIL 189
Query: 103 RALVVLPTRDLALQV 117
+A++++P + L Q+
Sbjct: 190 QAVILVPVQTLVAQI 204
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 209 (78.6 bits), Expect = 9.5e-27, Sum P(3) = 9.5e-27
Identities = 61/200 (30%), Positives = 96/200 (48%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L++ +EK +VF S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLVFFSTCACVEYYGKALETLVK-GVKIMCIHGKMKYK-RNKIFMEFRKL 317
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 484 KRFKKLLQKADNDSCPIHSI 503
L A N CP+ +
Sbjct: 378 SYISFL---AINQKCPLQEM 394
Score = 123 (48.4 bits), Expect = 9.5e-27, Sum P(3) = 9.5e-27
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ L+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPQVLSVLRELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQV 117
PIV+ L R + + A+++ PTR+LA+Q+
Sbjct: 66 PIVEILLRREEKFKKSQVGAIIITPTRELAVQI 98
Score = 88 (36.0 bits), Expect = 9.5e-27, Sum P(3) = 9.5e-27
Identities = 29/82 (35%), Positives = 40/82 (48%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + + +I+VATPGRL D G L L LV+DE DRLL ++
Sbjct: 125 EDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 185 INTILEFLPKQRRTGLFSATQT 206
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 192 (72.6 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 55/186 (29%), Positives = 96/186 (51%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQS 368
+ SAT T LA++ L P+ + + R K+ E LE + SK + + L++ L+
Sbjct: 272 LFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKK 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
+K +VF S+ +S + T + + + + + G Q+ R+KT F + K +L
Sbjct: 332 NLNKKIMVFFSTCKSV-QFHTEIMKISD--VDVSDIHGGMDQNRRTKTFFDFMKAKKGIL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVKRFK 487
+ +D RG+D+ V+ ++ YD P YIHR GRTAR G G+ +L +E++ F
Sbjct: 389 LCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQ-FI 447
Query: 488 KLLQKA 493
+ L+ A
Sbjct: 448 RYLKAA 453
Score = 133 (51.9 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
Q + S ++++ATPGRL+DH+ T+ F +HL LV+DE DR+L E ++ + +L++
Sbjct: 206 QRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILP 265
Query: 266 SDNENR-FSDAST 277
+ FS T
Sbjct: 266 KTRQTALFSATQT 278
Score = 95 (38.5 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L + +A++ MG + +Q +I P L +D+ + TGSGKTL++ +P V+ L
Sbjct: 96 LSEQTSIAIKEMGFQYMTQIQAG----SIQPLLEGKDVLGAARTGSGKTLAFLIPAVELL 151
Query: 95 SNRAVRCLRA---LVVLPTRDLALQVNS 119
+V+ PTR+LA+Q +
Sbjct: 152 FKERFSPRNGTGVIVICPTRELAIQTKN 179
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 227 (85.0 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 73/208 (35%), Positives = 101/208 (48%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 367
++ SAT T+ LA+L L P ++ E +Y P LE +ICE K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLR 309
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 425
S ++K IVF SS + L + F LR I I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT-LLHKDEVK 484
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G LL +E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQG 426
Query: 485 RFKKLLQKADNDSCPIHSI---PSSLIE 509
++LLQK P+ I P LI+
Sbjct: 427 MVQQLLQK----KVPVKEIKINPEKLID 450
Score = 104 (41.7 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 189 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 246
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 247 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 277
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
Score = 94 (38.1 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQ 116
Q
Sbjct: 155 YQ 156
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 183 (69.5 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 46/136 (33%), Positives = 79/136 (58%)
Query: 364 ALLQS-LGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
ALLQ L EK I+FT++ T RL LL E + SG Q R++ +++
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLT---EQNLNAVALSGELNQGQRNQIMES 291
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F +G+ ++LV++D +RG+D+ V++V+N+D P + + ++HR GRT RAG G +L+
Sbjct: 292 FSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVG 351
Query: 480 KDE---VKRFKKLLQK 492
++ +K + LQ+
Sbjct: 352 PNDWLSLKNVEAFLQQ 367
Score = 134 (52.2 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L +++MG + P Q+ Q+ I + DL +S TGSGKTL++ +P +Q L
Sbjct: 8 LDSALMSTIEHMGFNE--PTQIQ--QQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 95 S-NRAV--RCLRALVVLPTRDLALQVNS 119
S NRA+ R R +++ PTR+LA QV S
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFS 91
Score = 97 (39.2 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 203 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 249
D ++ LQ + +VATPGRL DH+ T+G F L L L++DE DR+L
Sbjct: 115 DQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRML 160
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 183 (69.5 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 46/136 (33%), Positives = 79/136 (58%)
Query: 364 ALLQS-LGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
ALLQ L EK I+FT++ T RL LL E + SG Q R++ +++
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLT---EQNLNAVALSGELNQGQRNQIMES 291
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F +G+ ++LV++D +RG+D+ V++V+N+D P + + ++HR GRT RAG G +L+
Sbjct: 292 FSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVG 351
Query: 480 KDE---VKRFKKLLQK 492
++ +K + LQ+
Sbjct: 352 PNDWLSLKNVEAFLQQ 367
Score = 134 (52.2 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L +++MG + P Q+ Q+ I + DL +S TGSGKTL++ +P +Q L
Sbjct: 8 LDSALMSTIEHMGFNE--PTQIQ--QQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 95 S-NRAV--RCLRALVVLPTRDLALQVNS 119
S NRA+ R R +++ PTR+LA QV S
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFS 91
Score = 97 (39.2 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 203 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 249
D ++ LQ + +VATPGRL DH+ T+G F L L L++DE DR+L
Sbjct: 115 DQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRML 160
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 140 (54.3 bits), Expect = 1.7e-26, Sum P(4) = 1.7e-26
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 406 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 465
G Q+ R + FR+ VL+++D + RG+DV + VV Y P ++HR GRT
Sbjct: 686 GSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRT 745
Query: 466 ARAGQLGRCFTLLHKDEVKRFKKLLQK 492
ARAG+ GR L E + F + L+K
Sbjct: 746 ARAGRKGRAVLFLTPSEAQ-FVRHLEK 771
Score = 132 (51.5 bits), Expect = 1.7e-26, Sum P(4) = 1.7e-26
Identities = 40/105 (38%), Positives = 58/105 (55%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINS 76
PV ++F + L L P L+++ I L VQ Q+TI L +D+ + S
Sbjct: 318 PVKETIFTGSKISTLG-LHPHAVKNLEDLLSIRELTSVQ----QKTIPEVLQGKDVLVRS 372
Query: 77 PTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQ 116
TGSGKTL+YALP+V+ L + R R ALV++PTR+L +Q
Sbjct: 373 QTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQ 417
Score = 120 (47.3 bits), Expect = 1.7e-26, Sum P(4) = 1.7e-26
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 267
L+ ++IL+ TPGRL+DH+ T F L L +L++DE DRLL Y+ V QL +
Sbjct: 450 LRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYER---DVKQLVEAI 506
Query: 268 NENRFSDASTFLP 280
++ R LP
Sbjct: 507 DKQRAECEDKELP 519
Score = 83 (34.3 bits), Expect = 1.7e-26, Sum P(4) = 1.7e-26
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 299 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 337
+DK P+L +M+LSATLT +LA L L +PL++ +
Sbjct: 514 EDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSD 552
Score = 43 (20.2 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 284 GSLKTIRRCGVERGFKD 300
GS+ R GV RGF+D
Sbjct: 686 GSMTQTERQGVFRGFRD 702
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 244 (91.0 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 63/202 (31%), Positives = 104/202 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 366
M+ SAT+T++ +L +L L+ PL L+ + + P E I ++ + L++L
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ K I+F+ + ++ HRL L FG +K E G Q+ R +L+ FR+ ++
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKIL---FGLAGLKAAELHGNLTQAQRLDSLELFRKQEVD 464
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
L+++D RG+D+ GV V+NY P I +Y+HR GRTARAG+ G T + D +
Sbjct: 465 FLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFV-TDSDRSL 523
Query: 487 KKLLQKADNDSCPIHSIPSSLI 508
K++ K IP I
Sbjct: 524 LKVIAKKVGSKLKSRVIPEQSI 545
Score = 134 (52.2 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 44/120 (36%), Positives = 64/120 (53%)
Query: 3 EAKKKSMPVLPWMRSPVD-VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
E K + P+ S VD VS D ++ L P L+ A + +G P+Q A
Sbjct: 144 EYKPEDATPKPFF-STVDGVSFHADTFME-LNLSRPLLR-ACETLGYKKPTPIQAAC--- 197
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--RALVVLPTRDLALQVNS 119
I L RDLC ++ TGSGKT ++ALP ++ L R R R L++ PTR+LA+Q++S
Sbjct: 198 -IPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHS 256
Score = 124 (48.7 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
Identities = 34/109 (31%), Positives = 60/109 (55%)
Query: 157 KDVFAAIAPAVGLSVGLAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDI 214
K VFA + + LAV S+ +++ IK + G+ ++V+ L+S DI
Sbjct: 234 KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVV--LRSMPDI 291
Query: 215 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
+VATPGR++DH+ + L+ L L++DE DRLL+ + + +++L
Sbjct: 292 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRL 340
Score = 40 (19.1 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQN 45
E+ K+ + PW + S+ E+ H +D ++ A+Q+
Sbjct: 61 EKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQH 104
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 225 (84.3 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 73/208 (35%), Positives = 100/208 (48%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 367
++ SAT T+ LA+L L P ++ E +Y P LE +ICE K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLR 309
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 425
S +K IVF SS + L + F LR I I G Q+Q R + F +
Sbjct: 310 SHLTKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT-LLHKDEVK 484
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G LL +E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQG 426
Query: 485 RFKKLLQKADNDSCPIHSI---PSSLIE 509
++LLQK P+ I P LI+
Sbjct: 427 MVQQLLQK----KVPVKEIKINPEKLID 450
Score = 104 (41.7 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 189 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 246
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 247 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 277
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
Score = 94 (38.1 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQ 116
Q
Sbjct: 155 YQ 156
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 241 (89.9 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 66/195 (33%), Positives = 104/195 (53%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV---AL 365
M+ SATL + LA+L L P+ + + ++ LE + + K+KP +L A+
Sbjct: 371 MLFSATLNDEVKTLAKLSLQQPIRVQV-DALMQVTSTLEQ-EFV---KIKPQHLSDRPAI 425
Query: 366 LQSL-----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420
L SL + I+F S + HRL + FG +K E G Q R +L+ F
Sbjct: 426 LLSLCTRVFNQGGTIIFCRSKKEVHRLRII---FGLSDLKAAELHGNLSQEQRFDSLQQF 482
Query: 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480
R+G++ L++SD +RG+D+ GV V+NY+ P + YIHR GRTARAG G+ + +
Sbjct: 483 RDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITD 542
Query: 481 DEVKRFKKLLQKADN 495
++ K K ++ KA N
Sbjct: 543 NDRKLLKDIVTKARN 557
Score = 136 (52.9 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 25 EDCP-LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ P + L P LK A+Q +G S P+Q + I L +D+ ++ TGSGKT
Sbjct: 187 EELPTFEELHLSRPLLK-AVQKLGFSQPTPIQA----KAIPLALNGKDILASASTGSGKT 241
Query: 84 LSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVNS 119
++ LP+++ L R R +R L++LPTR+LALQ S
Sbjct: 242 AAFLLPVLERLLFRDSEYRAIRVLILLPTRELALQCQS 279
Score = 117 (46.2 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 52/221 (23%), Positives = 102/221 (46%)
Query: 173 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S+ + +++ I + G+ ++V EL+ + D+++ATPGRL+DH+
Sbjct: 273 LALQCQSVMENLAQFSNITSCLIVGGLSNKAQEV--ELRKSPDVVIATPGRLIDHLLNAH 330
Query: 231 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 290
G L+ L L++DE DRLL ++ + ++ S NR F + +KT+
Sbjct: 331 GIGLDDLEILILDEADRLLDMGFK---DEINKIVESCPTNR--QTMLFSATLNDEVKTLA 385
Query: 291 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESY 349
+ +++ + + L M +++TL Q+ K+ L P L + TR
Sbjct: 386 KLSLQQPIRVQ-VDAL--MQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVF---NQGGT 439
Query: 350 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 390
+ C SK K ++ + ++ L + K ++ R +L
Sbjct: 440 IIFCRSK-KEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSL 479
Score = 41 (19.5 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 438 MDVEGVNNVVNYDKPAYIKT-YIHRAGRTARAGQLGRCFTLLHKDEVKR 485
+DV GVNNV + K K Y + + R Q F ++E KR
Sbjct: 654 IDVTGVNNVPSIKKLKQKKDPYYGLSRKQRRHRQFKEEFEREQQEERKR 702
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 172 (65.6 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 42/145 (28%), Positives = 71/145 (48%)
Query: 372 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 431
E+ IVF + E RL L + +I G Q R+ + FREG + +L+++
Sbjct: 247 ERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
Query: 432 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491
D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+ + ++ +
Sbjct: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
Query: 492 KADNDSCPIHSIPSSLIESLRPVYK 516
+ + I+ LRP +K
Sbjct: 364 YIKEE------VKERFIDGLRPKHK 382
Score = 134 (52.2 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128
+ R R L++ PTR+LA+QV + + + KN
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQV-AEQAQALAKN 101
Score = 106 (42.4 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 180 IADEISELIKRPKLE-----AGICYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFT 233
+A++ L K +L G+ Y D+L Q DI+VATPGRL+++I+A R F
Sbjct: 91 VAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FD 146
Query: 234 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+ +L++DE DR+L + PTV +L+
Sbjct: 147 CRAIEWLILDEADRMLDMGFG---PTVDRLS 174
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 172 (65.6 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 42/145 (28%), Positives = 71/145 (48%)
Query: 372 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 431
E+ IVF + E RL L + +I G Q R+ + FREG + +L+++
Sbjct: 247 ERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
Query: 432 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491
D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+ + ++ +
Sbjct: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
Query: 492 KADNDSCPIHSIPSSLIESLRPVYK 516
+ + I+ LRP +K
Sbjct: 364 YIKEE------VKERFIDGLRPKHK 382
Score = 134 (52.2 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128
+ R R L++ PTR+LA+QV + + + KN
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQV-AEQAQALAKN 101
Score = 106 (42.4 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 180 IADEISELIKRPKLE-----AGICYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFT 233
+A++ L K +L G+ Y D+L Q DI+VATPGRL+++I+A R F
Sbjct: 91 VAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FD 146
Query: 234 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+ +L++DE DR+L + PTV +L+
Sbjct: 147 CRAIEWLILDEADRMLDMGFG---PTVDRLS 174
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 235 (87.8 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 72/240 (30%), Positives = 113/240 (47%)
Query: 267 DNENRFSDASTFLPSAFGSLKTIRRCGV-----ERGFKDKPYPRLVKMVLSATLTQDPNK 321
D +R D F P G L + + E +K R M SAT+ +
Sbjct: 470 DEADRMIDMG-FEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYM-FSATMPPGVER 527
Query: 322 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 381
LA+ L +P+ +T G T K + + + ++ + K L LL LGE+ IVF ++
Sbjct: 528 LARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTK 586
Query: 382 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 441
++ + L+ G ++ G + Q R +L+ FR + VLV++D + RG+D+
Sbjct: 587 KNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIP 643
Query: 442 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEVKRFKKLLQKADNDSCP 499
V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV K + N + P
Sbjct: 644 DVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVP 703
Score = 93 (37.8 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 34/116 (29%), Positives = 53/116 (45%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +
Sbjct: 320 LTSELLKAVERAGYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYI 375
Query: 95 SN-------RAVRCLRALVVLPTRDLALQVNSARCK---YCCKNIFGLIADHSIAE 140
S A+V+ PTR+LA Q+ K Y + ++ SI E
Sbjct: 376 SRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
Score = 89 (36.4 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDRLLREAYQAWLPTVLQLTR 265
++ +I++ATPGRL+D + R + + + C Y+V+DE DR++ ++ + VL
Sbjct: 435 KITQGCEIVIATPGRLIDCLE--RRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMP 492
Query: 266 SDN 268
S N
Sbjct: 493 SSN 495
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 177 (67.4 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 46/169 (27%), Positives = 75/169 (44%)
Query: 344 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIK 402
E L+ L+C + + L+ L+ EE +T + C LL+ + I
Sbjct: 220 ETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNV 279
Query: 403 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 462
G RQ R L F+ +I+ L+++D RG+D+ V V+N+ P K YIHR
Sbjct: 280 CLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRV 339
Query: 463 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 511
GRTARAG+ G ++ +++ N H I ++E +
Sbjct: 340 GRTARAGRKGMSISIFRFPRDLELLAAIEEEINTKLTEHPIDQRMVERI 388
Score = 117 (46.2 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 33/85 (38%), Positives = 47/85 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP-TGSGKTLSYALPIVQT 93
L P L L +G+ P+Q Q+ I P + CI + TGSGKT ++ALPI++
Sbjct: 14 LRPWLVKQLTKLGLKGATPIQ----QKCI-PAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 94 LSNRAVRCLRALVVLPTRDLALQVN 118
LS V ALV+ PT +LA Q++
Sbjct: 69 LSEEPVSHF-ALVLTPTHELAYQIS 92
Score = 116 (45.9 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
Q+L I+VA PGRL DH+ F+ ++L YLVVDE DR+L + L + +
Sbjct: 120 QKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP 179
Query: 266 SDNENRFSDAS 276
+N F A+
Sbjct: 180 KTRQNLFFSAT 190
Score = 43 (20.2 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
Q+ + F A+G+ V + G + E +L++RP +
Sbjct: 90 QISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 209 (78.6 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 61/200 (30%), Positives = 96/200 (48%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFNQLV 259
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L++ +EK +VF S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLVFFSTCACVEYYGKALETLVK-GVKIMCIHGKMKYK-RNKIFMEFRKL 317
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 484 KRFKKLLQKADNDSCPIHSI 503
L A N CP+ +
Sbjct: 378 SYISFL---AINQKCPLQEM 394
Score = 118 (46.6 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ L+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPKVLSVLRELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQV 117
PI + L R + + A+++ PTR+LA+Q+
Sbjct: 66 PIEEILLRREEKFKKSQVGAIIITPTRELAVQI 98
Score = 88 (36.0 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 29/82 (35%), Positives = 40/82 (48%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
EDV + + +I+VATPGRL D G L L LV+DE DRLL ++
Sbjct: 125 EDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETS 184
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 185 INTILEFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 204 (76.9 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 58/207 (28%), Positives = 99/207 (47%)
Query: 284 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKL 342
G K +RR + K + R ++ SATL D N +A L+ P + G +
Sbjct: 167 GFAKELRR--IHNAAKHR---RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEH 221
Query: 343 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 402
+ + + L K L +L + I+FT++ T RL LN + +K
Sbjct: 222 KDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLN---QNNLKAV 278
Query: 403 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 462
SG Q+ R+ + F ++LV++D +RG+D+ V +V+N+D P + + Y+HR
Sbjct: 279 ALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRV 338
Query: 463 GRTARAGQLGRCFTLLHKDEVKRFKKL 489
GRT RAG G +L+ + + FK++
Sbjct: 339 GRTGRAGNKGDAMSLVGPKDWESFKRV 365
Score = 113 (44.8 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L+N+ + F + Q+ I + RDL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRL---LKNLAHYN-FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQV 117
L +A R L+++PTR+LA QV
Sbjct: 68 LKTKAFSAKDPRGLILVPTRELAKQV 93
Score = 90 (36.7 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 203 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249
D ++ L +VATPGRL DH++ R LE L LV+DE DR+L
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRML 164
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 204 (76.9 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 58/207 (28%), Positives = 99/207 (47%)
Query: 284 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKL 342
G K +RR + K + R ++ SATL D N +A L+ P + G +
Sbjct: 167 GFAKELRR--IHNAAKHR---RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEH 221
Query: 343 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 402
+ + + L K L +L + I+FT++ T RL LN + +K
Sbjct: 222 KDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLN---QNNLKAV 278
Query: 403 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 462
SG Q+ R+ + F ++LV++D +RG+D+ V +V+N+D P + + Y+HR
Sbjct: 279 ALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRV 338
Query: 463 GRTARAGQLGRCFTLLHKDEVKRFKKL 489
GRT RAG G +L+ + + FK++
Sbjct: 339 GRTGRAGNKGDAMSLVGPKDWESFKRV 365
Score = 113 (44.8 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L+N+ + F + Q+ I + RDL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRL---LKNLAHYN-FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQV 117
L +A R L+++PTR+LA QV
Sbjct: 68 LKTKAFSAKDPRGLILVPTRELAKQV 93
Score = 90 (36.7 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 203 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249
D ++ L +VATPGRL DH++ R LE L LV+DE DR+L
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRML 164
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 193 (73.0 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 65/213 (30%), Positives = 103/213 (48%)
Query: 289 IRRCGVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP- 343
I G E K K P R M+ SAT T+ LA++ L PL++ + +
Sbjct: 325 ILEVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATV 384
Query: 344 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 403
+ LE ++C S+ + L L L+ ++K +VF SS S LLN+ + + +
Sbjct: 385 DGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNY---IDLPVLA 441
Query: 404 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHR 461
G Q+Q+ R+ T F + +L+ +D RG+D+ V+ +V YD P K YIHR
Sbjct: 442 IHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIHR 501
Query: 462 AGRTARA-GQLGRCFTLLHKDEVKRFKKLLQKA 493
GRTAR G +L +E+ F + L++A
Sbjct: 502 VGRTARGINGRGHALLILRPEELG-FLRYLKQA 533
Score = 131 (51.2 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ + +++L
Sbjct: 283 QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKL 340
Score = 93 (37.8 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLR 103
GIS + F + ++I P L RD+ + TGSGKTL++ +P V+ + R
Sbjct: 180 GISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIYKLKFMPRNGT 239
Query: 104 ALVVL-PTRDLALQ 116
+++L PTR+LA+Q
Sbjct: 240 GVIILSPTRELAMQ 253
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 205 (77.2 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 56/213 (26%), Positives = 101/213 (47%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
+++SAT +LA+ L +P+ + G + + Y + Y+ QS
Sbjct: 235 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVVLKYLQFDKDIFTWKYMQVNAQS 294
Query: 369 LGEEKCIVFTSSVESTHRLCT-LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ +VF H + + + G + ++ G + Q R + L F++GK+++
Sbjct: 295 FCTDVVVVFVQ----LHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRI 350
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
LV++D +RG+DV + +V N+D P I+ Y+HR GRT RAG+ G+ TL+ K + K
Sbjct: 351 LVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAAS 410
Query: 488 KLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 520
+L+ +P LI S+ YK +
Sbjct: 411 ELIDILQRAK---QVVPDELI-SMAERYKQHQI 439
Score = 102 (41.0 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 200 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259
D + + + VDI++ATPGRL D + L+ + YLV+DE DR+L ++ +
Sbjct: 165 DRKAQINVVTKGVDIVIATPGRLND-LQMNNFINLKSITYLVLDEADRMLDMGFEPQIMK 223
Query: 260 VLQLTRSDNENRFSDAS 276
+L R D + A+
Sbjct: 224 ILIDVRPDRQTVMMSAT 240
Score = 99 (39.9 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 32/96 (33%), Positives = 46/96 (47%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLS 95
P + ++ G P+Q W I G+ DL + TG+GKTL+Y +P + S
Sbjct: 62 PDIMANIRKTGFQKPTPIQSQAWP-IILQGI---DLIGIAQTGTGKTLAYLMPGFIHLAS 117
Query: 96 NRAVRCLRA----LVVLPTRDLALQVNSARCKYCCK 127
+ R LV+ PTR+LALQV + KY K
Sbjct: 118 QPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYK 153
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 198 (74.8 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 61/180 (33%), Positives = 88/180 (48%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQS 368
+ SAT T L +L L P+F+ T+ ERL+ Y L+ E K + L L L+
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV-TTKIATVERLQQGYALVDEDK-RFLLLFTFLKK 388
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQ 426
+K +VF ++ S LLN+ I I Y G ++Q+ R K+ F K
Sbjct: 389 NMSKKIMVFFNNCMSVQFYNDLLNY-----IDIPTYCIHGKKKQNKRLKSFHDFSAAKCA 443
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVK 484
+L+ ++ RG+D+ VN ++ YD P K YIHR GRT R GQ G L K E+K
Sbjct: 444 ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHELK 502
Score = 119 (46.9 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 212 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 270
++IL+ATPGRL+DH+ T+ F ++L L++DE DRLL+ ++ + +++ L +
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 271 RFSDAST 277
FS T
Sbjct: 331 LFSATQT 337
Score = 97 (39.2 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
+ + + L D LK L+ + +L +Q + I L +D+ + TGSGKT
Sbjct: 145 YSELKFEELNICDA-LKKGLKELNFVTLTEIQA----KCIPHFLSGKDILGAAKTGSGKT 199
Query: 84 LSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVNSARCKYCCKNI 129
L++ +P + L N ++ L L++ PTR+L LQ+ CK CK I
Sbjct: 200 LAFLVPSINILYN--IKFLPKNGTGVLIISPTRELCLQIYQV-CKDLCKYI 247
Score = 42 (19.8 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 318 DPNKLAQLDLHHPLFLTTGETRYKLP-ERLESY 349
DPNKL + H +T +K+ E +SY
Sbjct: 520 DPNKLINIQSHIQSIVTKNFHLHKMAREAFKSY 552
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 198 (74.8 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 61/180 (33%), Positives = 88/180 (48%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQS 368
+ SAT T L +L L P+F+ T+ ERL+ Y L+ E K + L L L+
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV-TTKIATVERLQQGYALVDEDK-RFLLLFTFLKK 388
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQ 426
+K +VF ++ S LLN+ I I Y G ++Q+ R K+ F K
Sbjct: 389 NMSKKIMVFFNNCMSVQFYNDLLNY-----IDIPTYCIHGKKKQNKRLKSFHDFSAAKCA 443
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVK 484
+L+ ++ RG+D+ VN ++ YD P K YIHR GRT R GQ G L K E+K
Sbjct: 444 ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHELK 502
Score = 119 (46.9 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 212 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 270
++IL+ATPGRL+DH+ T+ F ++L L++DE DRLL+ ++ + +++ L +
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 271 RFSDAST 277
FS T
Sbjct: 331 LFSATQT 337
Score = 97 (39.2 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
+ + + L D LK L+ + +L +Q + I L +D+ + TGSGKT
Sbjct: 145 YSELKFEELNICDA-LKKGLKELNFVTLTEIQA----KCIPHFLSGKDILGAAKTGSGKT 199
Query: 84 LSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVNSARCKYCCKNI 129
L++ +P + L N ++ L L++ PTR+L LQ+ CK CK I
Sbjct: 200 LAFLVPSINILYN--IKFLPKNGTGVLIISPTRELCLQIYQV-CKDLCKYI 247
Score = 42 (19.8 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 318 DPNKLAQLDLHHPLFLTTGETRYKLP-ERLESY 349
DPNKL + H +T +K+ E +SY
Sbjct: 520 DPNKLINIQSHIQSIVTKNFHLHKMAREAFKSY 552
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 147 (56.8 bits), Expect = 5.5e-26, Sum P(4) = 5.5e-26
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 304 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 361
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 362 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPACVLNGELPLRSRCHIISQF 304
Query: 421 REGKIQVLVSSDAMTRGMDVEG 442
+G ++++DA G V+G
Sbjct: 305 NQGFYDCVIATDAEVLGPPVKG 326
Score = 131 (51.2 bits), Expect = 5.5e-26, Sum P(4) = 5.5e-26
Identities = 43/125 (34%), Positives = 68/125 (54%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
E +H+ LD RL A+ ++G S +Q ++ I L +DL + TGSGKT
Sbjct: 5 ESLGFEHMG-LDHRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTA 59
Query: 85 SYALPIVQTLSNRAV------RCLRALVVLPTRDLALQVNSA---RCKYCCKNIFGLIAD 135
+YA+P++Q L +R + +RALV++PT++LA Q S YC ++I +A+
Sbjct: 60 AYAIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDI--RVAN 117
Query: 136 HSIAE 140
S AE
Sbjct: 118 VSAAE 122
Score = 108 (43.1 bits), Expect = 5.5e-26, Sum P(4) = 5.5e-26
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 434 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 493
+ RG+D V V+N+D P + YIHRAGRTARA G T + E + K+ +
Sbjct: 345 VARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELL 404
Query: 494 DNDS-CPI 500
DS P+
Sbjct: 405 SGDSGAPV 412
Score = 70 (29.7 bits), Expect = 5.5e-26, Sum P(4) = 5.5e-26
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
L D++V TP R+++H+ + + LVVDE D L ++ L ++L
Sbjct: 131 LMEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLL 184
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 213 (80.0 bits), Expect = 5.6e-26, Sum P(3) = 5.6e-26
Identities = 58/194 (29%), Positives = 91/194 (46%)
Query: 308 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 367
+ + SA D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 348 RAMFSAIFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 406
Query: 368 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 407 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAGKIW 463
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 464 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 523
Query: 487 KKLLQKADNDSCPI 500
+ + CP+
Sbjct: 524 RSVANVIQQAGCPV 537
Score = 132 (51.5 bits), Expect = 5.6e-26, Sum P(3) = 5.6e-26
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + I L R+L ++PTGSGKTL
Sbjct: 158 PIATFQQLDQEYKINSRLLQNI-LDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTL 216
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
++++PI+ L + RAL++ PTR+LA Q++
Sbjct: 217 AFSIPILMQLKQPTNKGFRALIISPTRELANQIH 250
Score = 67 (28.6 bits), Expect = 5.6e-26, Sum P(3) = 5.6e-26
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 251
DILV TP RL+ + G L + +LVVDE+D+L +
Sbjct: 286 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFED 325
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 181 (68.8 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 309 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 366
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 325 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 384
Query: 367 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 385 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 500
Query: 485 RFKKLLQKA 493
+ + + QKA
Sbjct: 501 QLRYVEQKA 509
Score = 136 (52.9 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G+S LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 143 NFPISEETIKL-LKGRGVSYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 197
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQV 117
++ L + R + LV+ PTR+LA QV
Sbjct: 198 IERLQRNQETIKKSRSPKVLVLAPTRELANQV 229
Score = 101 (40.6 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 248 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 304
Query: 256 WLPTVLQLT-RSDNEN 270
+ ++ + ++D+E+
Sbjct: 305 QVEDIIHESYKTDSED 320
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 218 (81.8 bits), Expect = 7.6e-26, Sum P(3) = 7.6e-26
Identities = 56/197 (28%), Positives = 98/197 (49%)
Query: 306 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 365
+ K + SAT+ +LA++ P+ + G + + ++ L S + ++
Sbjct: 222 ICKSLFSATIPSRVEELAKVVTVDPIRIIVG-LKDAATDSIDQRLLFVGSDTSKIVILRQ 280
Query: 366 LQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
+ S GE K ++F +E L T L F E+ + + G Q+ R + L FR+G
Sbjct: 281 MISNGELKPRVVIFVQDIERAKALYTELL-FDEIHVGV--IHGELPQAKREEALAKFRKG 337
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+I VL+++D + RG+D GV V+N+D P + +YIHR GRT RAG G+ T K++
Sbjct: 338 EIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDG 397
Query: 484 KRFKKLLQKADNDSCPI 500
+ K + + C +
Sbjct: 398 EYIKLIAGVMRSSGCEV 414
Score = 114 (45.2 bits), Expect = 7.6e-26, Sum P(3) = 7.6e-26
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
TIG +RDL +PTGSGKT++Y PI+Q L RA++V PTR+L Q+
Sbjct: 79 TIGS---KRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Score = 72 (30.4 bits), Expect = 7.6e-26, Sum P(3) = 7.6e-26
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 266
+L+ D+ + TP RL+ I G + E + + V+DE DRL + +L S
Sbjct: 162 KLREKYDMCIGTPMRLVQAIQT--GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTS 219
Query: 267 DNENRFSDASTFLPSAFGSLKTI 289
N + ++T +PS L +
Sbjct: 220 SNICKSLFSAT-IPSRVEELAKV 241
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 228 (85.3 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 56/213 (26%), Positives = 106/213 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
+++SAT +LA+ L +P+ + G +E ++ + K ++ + S
Sbjct: 421 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDS 480
Query: 369 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ ++K I+F + + + L G + ++ G + Q R + L F++GK+++
Sbjct: 481 MKPKDKAIIFVGKKSTADDIASDLGVQG---VPVQSLHGDREQCDREQALDDFKKGKVRI 537
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
LV++D +RG+DV + +V N+D P I+ Y+HR GRT RAG+ G+ TL+ K + K
Sbjct: 538 LVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAAS 597
Query: 488 KLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 520
+L+ +P LI S+ YK +
Sbjct: 598 ELIDILQRAK---QVVPDELI-SMAERYKQHQI 626
Score = 99 (39.9 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 32/96 (33%), Positives = 46/96 (47%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLS 95
P + ++ G P+Q W I G+ DL + TG+GKTL+Y +P + S
Sbjct: 249 PDIMANIRKTGFQKPTPIQSQAWP-IILQGI---DLIGIAQTGTGKTLAYLMPGFIHLAS 304
Query: 96 NRAVRCLRA----LVVLPTRDLALQVNSARCKYCCK 127
+ R LV+ PTR+LALQV + KY K
Sbjct: 305 QPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYK 340
Score = 83 (34.3 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 200 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259
D + + + VDI++ATPGRL D + L+ + YL +E DR+L ++ +
Sbjct: 352 DRKAQINVVTKGVDIVIATPGRLND-LQMNNFINLKSITYLA-NEADRMLDMGFEPQIMK 409
Query: 260 VLQLTRSDNENRFSDAS 276
+L R D + A+
Sbjct: 410 ILIDVRPDRQTVMMSAT 426
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 181 (68.8 bits), Expect = 8.5e-26, Sum P(3) = 8.5e-26
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 309 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 366
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 367 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 485 RFKKLLQKA 493
+ + + QKA
Sbjct: 499 QLRYVEQKA 507
Score = 133 (51.9 bits), Expect = 8.5e-26, Sum P(3) = 8.5e-26
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 141 NFPISEETIKL-LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQV 117
++ L + R + LV+ PTR+LA QV
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLAPTRELANQV 227
Score = 104 (41.7 bits), Expect = 8.5e-26, Sum P(3) = 8.5e-26
Identities = 24/97 (24%), Positives = 54/97 (55%)
Query: 178 SSIADEISELIKRPKLEA---GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 234
+ +A + ++ K+ + G Y + + +++ +DILV TPGR+ DH+ + R L
Sbjct: 225 NQVAKDFKDITKKLSVACFYGGTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDL 281
Query: 235 EHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNEN 270
L ++V+DE D++L + + ++ + ++D+E+
Sbjct: 282 SKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 181 (68.8 bits), Expect = 8.6e-26, Sum P(3) = 8.6e-26
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 309 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 366
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 324 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 367 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 499
Query: 485 RFKKLLQKA 493
+ + + QKA
Sbjct: 500 QLRYVEQKA 508
Score = 136 (52.9 bits), Expect = 8.6e-26, Sum P(3) = 8.6e-26
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G+S LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 142 NFPISEETIKL-LKGRGVSYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 196
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQV 117
++ L + R + LV+ PTR+LA QV
Sbjct: 197 IERLQRNQETIKKSRSPKVLVLAPTRELANQV 228
Score = 101 (40.6 bits), Expect = 8.6e-26, Sum P(3) = 8.6e-26
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 247 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 303
Query: 256 WLPTVLQLT-RSDNEN 270
+ ++ + ++D+E+
Sbjct: 304 QVEDIIHESYKTDSED 319
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 203 (76.5 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 55/207 (26%), Positives = 101/207 (48%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQ 367
++ +AT+ +LA L P + T+ E +E + + K L L+
Sbjct: 182 LLFTATMDSAMARLAGRLLREPERIDIAGTK-TTHEHIEQRLHVADDLHHKNRLLRHLIT 240
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ I+F+++ L L G + G Q+ R++T+ A ++G+I++
Sbjct: 241 DESLRRAIIFSATKRDAENLALELKAQGHSAAALH---GDMPQNARNRTIAAMKQGRIRL 297
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
LV++D RG+DV G+++V+N+D P + + Y+HR GRT RAG G + +EV
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLA 357
Query: 488 KLLQKADNDSCPIHSIPSSLIESLRPV 514
++ ++ + P H IP +E RP+
Sbjct: 358 RI-ERYIGQTLPEHHIPG--LEPSRPL 381
Score = 106 (42.4 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 33/89 (37%), Positives = 45/89 (50%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G + PVQ A + L DL + TG+GKT ++ LP +Q L
Sbjct: 8 LAPHILKAVAACGYTEPTPVQAAA----VPRALENVDLLATAQTGTGKTAAFVLPALQRL 63
Query: 95 SNRAV---RCLRALVVLPTRDLALQVNSA 120
S+ R R LV+ PTR+LA QV A
Sbjct: 64 SSPPQGPGRGPRVLVLTPTRELAQQVTDA 92
Score = 94 (38.1 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249
L+ L + VD +VATPGRL+D ++ R L L LV+DE DR+L
Sbjct: 117 LRLLSAPVDFIVATPGRLVDLLDR-RSLDLSRLELLVLDEADRML 160
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 194 (73.4 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 55/187 (29%), Positives = 96/187 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + LA L P ++ + + ++ + E + + L L L+
Sbjct: 200 LMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKREL-LSELIGV 258
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
++ +VF + ES + L L G IK G + Q R+K L+ F EGK++VL
Sbjct: 259 NNWQQVLVFAGTKESANTLAKELKLDG---IKAALCHGDKTQGARNKALEQFSEGKVRVL 315
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDE--VKR 485
V++D RG+D+ + VVN+ P + Y+HR GRT RAG+ G +L+ KDE ++
Sbjct: 316 VATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLEN 375
Query: 486 FKKLLQK 492
++L+++
Sbjct: 376 IEQLIER 382
Score = 122 (48.0 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 178 SSIADEISELIKRPKLEAGICYDPEDVLQE---LQSAVDILVATPGRLMDHINATRGFTL 234
+ +AD I + + +++G+ Y + + L+ +D+LVATPGRL++H+ A R L
Sbjct: 105 NQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHL-ALRNVDL 163
Query: 235 EHLCYLVVDETDRLL 249
+ +LV+DE DR+L
Sbjct: 164 SQVKFLVLDEADRML 178
Score = 72 (30.4 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQT 93
L L A++ G +L P+Q QE I P + + DL ++ TG+GKT +++LPI+
Sbjct: 8 LSADLLKAVKACGYKNLTPIQ----QEAI-PVIRQGVDLLASAQTGTGKTAAFSLPILDA 62
Query: 94 LS--NRAVR 100
++ N A +
Sbjct: 63 IAKANHAAK 71
Score = 52 (23.4 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 100 RCLRALVVLPTRDLALQV 117
+ +RAL++ PTR+LA QV
Sbjct: 90 QAIRALILTPTRELANQV 107
>UNIPROTKB|F1SSH6 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CU856650
Ensembl:ENSSSCT00000018227 Uniprot:F1SSH6
Length = 545
Score = 148 (57.2 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 304 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 361
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 187 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 246
Query: 362 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 247 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPACVLNGELPLRSRCHIISQF 303
Query: 421 REGKIQVLVSSDAMTRGMDVEG 442
+G ++++DA G V+G
Sbjct: 304 NQGLYDCVIATDAEVLGPPVKG 325
Score = 132 (51.5 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
Identities = 44/120 (36%), Positives = 67/120 (55%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S P + QE I L +D + + G GKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSR--PTLI---QEKIPLALEGKDSWLGAARGQGKTAAYAIP 63
Query: 90 IVQTLSNR-----AV-RCLRALVVLPTRDLALQVNSA---RCKYCCKNIFGLIADHSIAE 140
++Q L +R AV + +R LV++PT+DLA Q S YC ++I +A+ S AE
Sbjct: 64 MLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI--RVANVSAAE 121
Score = 100 (40.3 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 434 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 489
+ RG+D V V+N+D P + YIHRAGRTARA G T + E K+
Sbjct: 346 VARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKI 401
Score = 73 (30.8 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
L DI+V TP R+++H+ + L LVVDE D L ++ L ++L
Sbjct: 130 LMEKPDIVVGTPSRILNHLQQDNLKLRDSLELLVVDEADLLFSFGFEEELKSLL 183
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 181 (68.8 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 309 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 366
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 367 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 485 RFKKLLQKA 493
+ + + QKA
Sbjct: 499 QLRYVEQKA 507
Score = 133 (51.9 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 141 NFPISEETIKL-LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQV 117
++ L + R + LV+ PTR+LA QV
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLAPTRELANQV 227
Score = 103 (41.3 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 246 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 302
Query: 256 WLPTVLQLT-RSDNEN 270
+ +L + ++D+E+
Sbjct: 303 QVEDILHESYKTDSED 318
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 188 (71.2 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L P + E L + Y + E + K L L
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 332 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 448
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PS++ +SL
Sbjct: 449 IEEQLGTEIKPI---PSNIDKSL 468
Score = 119 (46.9 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 102 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + ++A+V++PTR+LALQV+ C K++ G
Sbjct: 158 LDLKKDN-IQAMVIVPTRELALQVSQI-CIQVSKHMGG 193
Score = 100 (40.3 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 32/109 (29%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 232
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G +EH+ +V+DE D+LL + + + ++ LT N ++TF
Sbjct: 233 GVAKVEHVQMIVLDEADKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 280
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 181 (68.8 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 309 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 366
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 367 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 485 RFKKLLQKA 493
+ + + QKA
Sbjct: 499 QLRYVEQKA 507
Score = 133 (51.9 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 141 NFPISEETIKL-LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQV 117
++ L + R + LV+ PTR+LA QV
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLAPTRELANQV 227
Score = 101 (40.6 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 246 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 302
Query: 256 WLPTVLQLT-RSDNEN 270
+ ++ + ++D+E+
Sbjct: 303 QVEDIIHESYKTDSED 318
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 185 (70.2 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 56/187 (29%), Positives = 95/187 (50%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQS 368
+ SAT + LA++ L P+++ E R ++ E LE + S ++ L+L+ L+
Sbjct: 337 LFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKR 396
Query: 369 L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
G++K +VF S+ +ST L + ++ E G Q+ R+ T F + + +
Sbjct: 397 FQGKKKIMVFFSTCKSTKFHAELFRY---IKFDCLEIRGGIDQNKRTPTFLQFIKAETGI 453
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVKRF 486
L+ ++ RG+D V+ +V YD P YIHR GRTAR G G+ +L E+K F
Sbjct: 454 LLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELK-F 512
Query: 487 KKLLQKA 493
+ L+ A
Sbjct: 513 IQYLKAA 519
Score = 137 (53.3 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
L V++LVATPGRL+DH+ T GF ++L +LV+DE DR+L + ++ L +L L
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNL 328
Score = 89 (36.4 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTG 79
+ S+ + + L D K +++ MG + + +Q + I P + D+ + TG
Sbjct: 147 ETSIMTNKTFESLSLSDNTYK-SIKEMGFARMTQIQA----KAIPPLMMGEDVLGAARTG 201
Query: 80 SGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQ 116
SGKTL++ +P V+ L R R LV+ PTR+LA+Q
Sbjct: 202 SGKTLAFLIPAVELLY-RVKFTPRNGTGVLVICPTRELAIQ 241
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 200 (75.5 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 51/186 (27%), Positives = 89/186 (47%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT ++ +LA+ L++ + + G + +C+ K + L+ LL
Sbjct: 339 LMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTD 398
Query: 369 LGEE---KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425
+ E K I+F VE+ R+ + + + G + Q R L +FR G+
Sbjct: 399 ISAENETKTIIF---VETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRH 455
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
+LV++D RG+DV+ V V+NYD P+ + Y+HR GRT R+ G +TL +
Sbjct: 456 SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANK 515
Query: 486 FKKLLQ 491
L+Q
Sbjct: 516 ANDLIQ 521
Score = 118 (46.6 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
++L+ V+I++ATPGRL+D + RG T L+ YLV+DE DR+L ++ + ++Q
Sbjct: 275 RDLERGVEIVIATPGRLIDFLE--RGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332
Query: 265 RSDNE 269
R D +
Sbjct: 333 RPDRQ 337
Score = 96 (38.9 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVNSARCKY 124
RDL + TGSGKTL+Y LP V ++N+ R R ALV+ PTR+LA Q+ ++
Sbjct: 195 RDLVGVAQTGSGKTLAYVLPAVVHINNQP-RLERGDGPIALVLAPTRELAQQIQQVAIEF 253
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 188 (71.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L P + E L + Y + E + K L L
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 332 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 448
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PS++ +SL
Sbjct: 449 IEEQLGTEIKPI---PSNIDKSL 468
Score = 119 (46.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 102 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + ++A+V++PTR+LALQV+ C K++ G
Sbjct: 158 LDLKKDN-IQAMVIVPTRELALQVSQI-CIQVSKHMGG 193
Score = 97 (39.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/109 (28%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 232
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G ++H+ +V+DE D+LL + + + ++ LT N ++TF
Sbjct: 233 GVAKVDHVQMIVLDEADKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 280
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 188 (71.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L P + E L + Y + E + K L L
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 332 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 448
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PS++ +SL
Sbjct: 449 IEEQLGTEIKPI---PSNIDKSL 468
Score = 119 (46.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 102 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + ++A+V++PTR+LALQV+ C K++ G
Sbjct: 158 LDLKKDN-IQAMVIVPTRELALQVSQI-CIQVSKHMGG 193
Score = 97 (39.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/109 (28%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 232
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G ++H+ +V+DE D+LL + + + ++ LT N ++TF
Sbjct: 233 GVAKVDHVQMIVLDEADKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 280
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 188 (71.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L P + E L + Y + E + K L L
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 332 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 448
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PS++ +SL
Sbjct: 449 IEEQLGTEIKPI---PSNIDKSL 468
Score = 119 (46.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 102 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + ++A+V++PTR+LALQV+ C K++ G
Sbjct: 158 LDLKKDN-IQAMVIVPTRELALQVSQI-CIQVSKHMGG 193
Score = 97 (39.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/109 (28%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 232
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G ++H+ +V+DE D+LL + + + ++ LT N ++TF
Sbjct: 233 GVAKVDHVQMIVLDEADKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 280
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 188 (71.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L P + E L + Y + E + K L L
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 332 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 448
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PS++ +SL
Sbjct: 449 IEEQLGTEIKPI---PSNIDKSL 468
Score = 119 (46.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 102 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + ++A+V++PTR+LALQV+ C K++ G
Sbjct: 158 LDLKKDN-IQAMVIVPTRELALQVSQI-CIQVSKHMGG 193
Score = 97 (39.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/109 (28%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 232
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G ++H+ +V+DE D+LL + + + ++ LT N ++TF
Sbjct: 233 GVAKVDHVQMIVLDEADKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 280
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 188 (71.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L P + E L + Y + E + K L L
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 332 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 448
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PS++ +SL
Sbjct: 449 IEEQLGTEIKPI---PSNIDKSL 468
Score = 119 (46.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 102 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + ++A+V++PTR+LALQV+ C K++ G
Sbjct: 158 LDLKKDN-IQAMVIVPTRELALQVSQI-CIQVSKHMGG 193
Score = 97 (39.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/109 (28%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 232
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G ++H+ +V+DE D+LL + + + ++ LT N ++TF
Sbjct: 233 GVAKVDHVQMIVLDEADKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 280
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 188 (71.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L P + E L + Y + E + K L L
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 332 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 448
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PS++ +SL
Sbjct: 449 IEEQLGTEIKPI---PSNIDKSL 468
Score = 119 (46.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 102 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + ++A+V++PTR+LALQV+ C K++ G
Sbjct: 158 LDLKKDN-IQAMVIVPTRELALQVSQI-CIQVSKHMGG 193
Score = 97 (39.2 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/109 (28%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 232
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G ++H+ +V+DE D+LL + + + ++ LT N ++TF
Sbjct: 233 GVAKVDHVQMIVLDEADKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 280
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 215 (80.7 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 56/184 (30%), Positives = 93/184 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT ++ LA L + + G T + +C+ K +++ L S
Sbjct: 566 LMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGS 625
Query: 369 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+G +EK IVF + + L +L G I I G + Q R L F+ G + +
Sbjct: 626 VGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIH---GNKSQPERDFVLSQFKNGMVPI 682
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
++++D +RG+D++ + VVNYD P I+ YIHR GRTARAG G ++LL D +
Sbjct: 683 MIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLAN 742
Query: 488 KLLQ 491
+L++
Sbjct: 743 ELIK 746
Score = 106 (42.4 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 267
L+ V+I++ATPGRL+D + + + L + YLV+DE DR+L ++ + ++ R D
Sbjct: 504 LKKGVEIVIATPGRLIDILESGKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPD 562
Query: 268 NENRFSDAS 276
+ A+
Sbjct: 563 RQTLMFSAT 571
Score = 90 (36.7 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 103
G + P+Q W + G RD+ + TGSGKTL++ LP + ++ + V LR
Sbjct: 403 GFPNPTPIQSQAWPIAL-KG---RDIIGLAKTGSGKTLAFLLPSIVHINAQPV--LREDD 456
Query: 104 ---ALVVLPTRDLALQVNSARCKY 124
LV+ PTR+LALQ+ K+
Sbjct: 457 GPIVLVLAPTRELALQIQEETNKF 480
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 203 (76.5 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
Identities = 58/189 (30%), Positives = 90/189 (47%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT ++ LA+ L P G T K + + I + K L+ LL+
Sbjct: 347 LLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQ 406
Query: 369 LGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
L + K ++F + ++ L G + I G + QS R + L F+ G+ +
Sbjct: 407 LMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIH---GDKTQSERDRVLAEFKSGRSPI 463
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK--- 484
+ ++D RG+DV+ + VVNYD P ++ YIHR GRT RAG G FT D K
Sbjct: 464 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAR 523
Query: 485 RFKKLLQKA 493
K+LQ+A
Sbjct: 524 ELVKILQEA 532
Score = 108 (43.1 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I++ATPGRL+D + L+ + YLV+DE DR+L ++ + ++
Sbjct: 282 IRDLRRGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI 340
Query: 265 RSDNE 269
R D +
Sbjct: 341 RPDRQ 345
Score = 95 (38.5 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
Identities = 35/112 (31%), Positives = 57/112 (50%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P + +F+D + P D L+ A+ +G + P+Q W + G RDL +
Sbjct: 161 PKPMKMFQDA---NFP--DNILE-AIAKLGFTEPTPIQAQGWPMAL-KG---RDLIGIAE 210
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVNSARCKY 124
TGSGKTL+Y LP + +S + R + L++ PTR+LA+Q+ K+
Sbjct: 211 TGSGKTLAYLLPALVHVSAQP-RLGQDDGPIVLILAPTRELAVQIQEESRKF 261
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 180 (68.4 bits), Expect = 3.6e-25, Sum P(3) = 3.6e-25
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 309 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 366
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 367 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 485 RFKKLLQKA 493
+ + + QKA
Sbjct: 496 QLRYVEQKA 504
Score = 129 (50.5 bits), Expect = 3.6e-25, Sum P(3) = 3.6e-25
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----R 97
L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+++ L +
Sbjct: 149 LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIK 204
Query: 98 AVRCLRALVVLPTRDLALQV 117
R + LV+ PTR+LA QV
Sbjct: 205 KSRSPKVLVLAPTRELANQV 224
Score = 103 (41.3 bits), Expect = 3.6e-25, Sum P(3) = 3.6e-25
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G Y + + ++++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 243 GTSYQSQ--INQIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 299
Query: 256 WLPTVLQLT-RSDNEN 270
+ ++ + ++D+E+
Sbjct: 300 QVEDIIHESYKTDSED 315
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 189 (71.6 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 51/201 (25%), Positives = 94/201 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT +LA L P+ + G ++ ++ K K +++
Sbjct: 404 VMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVEN 463
Query: 369 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ +K I+F S H L + F I + G QS + + ++ F+ G I++
Sbjct: 464 MSPNDKVIMFVSQ---KHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKI 520
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
L+++D ++RG+D+ V +V NYD P I Y+HR G R G+ G TL+ + + K
Sbjct: 521 LITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAG 580
Query: 488 KLLQKADNDSCPIHSIPSSLI 508
+L++ D + S+P L+
Sbjct: 581 ELIKILDRAN---QSVPEDLV 598
Score = 112 (44.5 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
++++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 339 IEDISKGVDIIIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV 397
Query: 265 RSDNENRFSDAS 276
R D + + A+
Sbjct: 398 RPDRQTVMTSAT 409
Score = 107 (42.7 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 35/98 (35%), Positives = 51/98 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L ++ +GI P+Q W I G+ DL + + TG+GKTLSY +P L +
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWP-IILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDS 286
Query: 97 RAV-RCLR----ALVVLPTRDLALQVNSARCKYCCKNI 129
+ + R R LV+ PTR+LAL V + KY K +
Sbjct: 287 QPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGL 324
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 188 (71.2 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT K L P + E L + Y + E + K L L
Sbjct: 274 LLYSATFPLSVQKFMNSHLQKPYEINLME-ELTLKGVTQYYAYVTERQ-KVHCLNTLFSR 331
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
L + I+F +S + L ++ G I RQ R++ FR G + L
Sbjct: 332 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH---AKMRQEHRNRVFHDFRNGLCRNL 388
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V +D TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS 448
Query: 489 LLQKADNDSCPIHSIPSSLIESL 511
+ ++ + PI PS++ +SL
Sbjct: 449 IEEQLGTEIKPI---PSNIDKSL 468
Score = 119 (46.9 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + MG P+Q +E+I L RD+ + G+GK+ +Y +P+++
Sbjct: 102 CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131
L + ++A+V++PTR+LALQV+ C K++ G
Sbjct: 158 LDLKKDN-IQAMVIVPTRELALQVSQI-CIQVSKHMGG 193
Score = 95 (38.5 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 31/109 (28%), Positives = 60/109 (55%)
Query: 173 LAVGQSSIADEISELIKRPKLEA--GICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA+ S I ++S+ + K+ A G +D+++ L V +++ATPGR++D I +
Sbjct: 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR-LDDTVHVVIATPGRILDLIK--K 232
Query: 231 GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
G +EH+ +V+DE ++LL + + + ++ LT N ++TF
Sbjct: 233 GVAKVEHVQMIVLDEANKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 280
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 195 (73.7 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 54/171 (31%), Positives = 84/171 (49%)
Query: 309 MVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 367
++ SATL D A+ L P+ ++ + + + + Y + + K LV LL+
Sbjct: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ IVF E H L L G I G Q R++ +K EG++ V
Sbjct: 245 QPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGRVNV 301
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 478
LV++D RG+D+ V++V N+D P TY+HR GRTARAG+ G +L+
Sbjct: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352
Score = 121 (47.7 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L ALQ+ G + +Q A I P L RD+ ++PTG+GKT +Y LP +Q L
Sbjct: 11 LDESLLEALQDKGFTRPTAIQAAA----IPPALDGRDVLGSAPTGTGKTAAYLLPALQHL 66
Query: 95 SN---RAVRCLRALVVLPTRDLALQVN 118
+ + R L++ PTR+LA+QV+
Sbjct: 67 LDFPRKKSGPPRILILTPTRELAMQVS 93
Score = 82 (33.9 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 180 IADEISELIKRPKLE-----AGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFT 233
++D EL K L+ G+ Y + +V E Q DI+VAT GRL+ +I F
Sbjct: 92 VSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQ---DIVVATTGRLLQYIKE-ENFD 147
Query: 234 LEHLCYLVVDETDRLL 249
+ L++DE DR+L
Sbjct: 148 CRAVETLILDEADRML 163
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 209 (78.6 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 304 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 363
P L K + SAT+ + ++AQ + P+ + G + +E + C ++ L +
Sbjct: 304 PSLRKAMFSATIPSNVEEIAQSIMMDPVRVIIGH-KEAANTNIEQKLIFCGNEEGKLIAI 362
Query: 364 ALLQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421
L GE K I+F +ES R L + RI + + R + ++ F+
Sbjct: 363 RQLVQEGEFKPPIIIF---LESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFK 419
Query: 422 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 481
G++ L+ +D + RG+D +GVN V+NYD P + Y+HR GRT R G+ G+ T K
Sbjct: 420 TGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQ 479
Query: 482 EVKRFKKLLQKADNDSCPI 500
+ K ++ C +
Sbjct: 480 DSVAIKPIINVMKQSGCEV 498
Score = 124 (48.7 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P+ + FED + D RL L G + P+Q E I L RD+ P
Sbjct: 114 PLPIGSFEDL-ISRFS-FDKRLLNNLIENGFTEPTPIQC----ECIPVALNNRDVLACGP 167
Query: 78 TGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQV 117
TGSGKTL++ +P+VQ + ++ L+ L++ PT++LA Q+
Sbjct: 168 TGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQI 208
Score = 69 (29.3 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 213 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 272
DI+++TP RL+D + L + +L+ DE D+L + + +L R + +
Sbjct: 251 DIIISTPLRLIDVVK-NEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKA 309
Query: 273 SDASTFLPS 281
++T +PS
Sbjct: 310 MFSAT-IPS 317
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 199 (75.1 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 63/198 (31%), Positives = 92/198 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 367
++ SAT T+ LA+L L P ++ E ++ P LE ++CE K L + L+
Sbjct: 251 LLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLR 310
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 425
S ++K IVF + + L + F LR I + G Q+Q R + F
Sbjct: 311 SHLQKKIIVFFACCKEVQYLFRI---FCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTS 367
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
VL ++D RG+D VN V+ +D P TYIHR GRTAR + G +L E K
Sbjct: 368 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKG 427
Query: 486 FKKLLQKADNDSCPIHSI 503
LQ+ PI+ I
Sbjct: 428 MISQLQEK---KVPINKI 442
Score = 107 (42.7 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P K L+ + + + + + ++TIG L RD+ + TGSGKTL++ +P+++ L
Sbjct: 76 PLSKKTLKGL-LEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLYR 134
Query: 97 R---AVRCLRALVVLPTRDLALQ 116
A+ L AL++ PTR+LA Q
Sbjct: 135 EQWTAMDGLGALIISPTRELAYQ 157
Score = 106 (42.4 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 189 KRPKLEAGICYDPEDVLQELQSA--VDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 246
K + AG+ +D+ E + +I++ TPGRL+ H++ T F L LV+DE D
Sbjct: 167 KNHEFSAGLVIGGKDLKDESEKIHRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEAD 226
Query: 247 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 277
R+L + L +++ L +S FS T
Sbjct: 227 RILDMGFADTLNAIVENLPKSRQTLLFSATQT 258
Score = 48 (22.0 bits), Expect = 7.3e-09, Sum P(3) = 7.3e-09
Identities = 27/112 (24%), Positives = 49/112 (43%)
Query: 400 KIKEYSGLQRQSVRSKTLKAFRE-GKI--------QVLV-----SSDAMTRGMDVEGVNN 445
K K+ +Q+++++ T K F E GK+ + +V D MT G++VE
Sbjct: 667 KFKDAKKIQKRNLKVNTKKVFTEDGKVVQQWPPLQRTVVPDEEDDDDVMT-GINVEAAKE 725
Query: 446 VVNYDKPAYIKT-YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 496
+ + A+ K Y + R +L ++ K+ K+ +KAD D
Sbjct: 726 RLRREDQAFDKMEYRRKIKEKHREKRLKE--KAARREASKQHKEEKRKADGD 775
Score = 40 (19.1 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 480 KDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 514
+DE++ F LQ+ S P S +SL+P+
Sbjct: 538 EDELQSFTAQLQQQKTKSEPSQSEEDKDQDSLKPL 572
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 217 (81.4 bits), Expect = 5.5e-25, Sum P(3) = 5.5e-25
Identities = 57/181 (31%), Positives = 97/181 (53%)
Query: 302 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK-PL 360
PY + ++ SATL Q +LA ++ P + + ER+E K K PL
Sbjct: 178 PYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTA-ERVEQVLYHVGRKEKFPL 236
Query: 361 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420
L+ LL+ G E+ ++F ++ L LN + ++ SG Q R K L+ F
Sbjct: 237 -LLGLLRKEGMERTMIFVNTKREAEFLDERLNA-NDFPCRV--ISGDVEQRKRLKILEDF 292
Query: 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480
+ GK+ +++++D +RG+ ++GV++V+NYD P + Y+HR GRTARAG G+ ++ +
Sbjct: 293 KSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADE 352
Query: 481 D 481
D
Sbjct: 353 D 353
Score = 91 (37.1 bits), Expect = 5.5e-25, Sum P(3) = 5.5e-25
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
L+ D++V TPGRL+D++ + ++L+ + LV+DE DR+ + A L +L+
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQ-KVYSLKEIEMLVIDEADRMFDMGFIADLRFILR 174
Score = 85 (35.0 bits), Expect = 5.5e-25, Sum P(3) = 5.5e-25
Identities = 28/107 (26%), Positives = 53/107 (49%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ + + G S P+Q ++T+ L +D+ + TG+GKT ++ + + L
Sbjct: 8 LPEQVMQGVADAGFSDCTPIQ----EKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKL 63
Query: 95 --SNRAV--RCLRALVVLPTRDLALQVNS------ARCKYCCKNIFG 131
S R R RA+++ PTR+L +Q+ A C + + I+G
Sbjct: 64 LRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYG 110
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 197 (74.4 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+ ++A+ + P + +P ++ + L + K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDI 237
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
E IVF + L LN G I G Q+ R L+ F+EG I+VL
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH---GDLTQAKRMSVLRKFKEGSIEVL 294
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G + E + K
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 489 L 489
+
Sbjct: 355 I 355
Score = 111 (44.1 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L ++++MG P+Q ETI L +D+ + TG+GKT ++ LP++ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQA----ETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV 64
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
++ +V+ PTR+LA+QV
Sbjct: 65 DTHK-ESVQGIVIAPTRELAIQV 86
Score = 93 (37.8 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ +E+ ++ K ++ Y +D+ ++ L+ I+V TPGR++DHIN + L++
Sbjct: 86 VGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR-KTLRLQN 144
Query: 237 LCYLVVDETDRLLREAY 253
+ +V+DE D +L +
Sbjct: 145 VETVVLDEADEMLNMGF 161
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 219 (82.2 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 59/174 (33%), Positives = 88/174 (50%)
Query: 304 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 363
P+L + SAT+ Q +L + +P+ + GE + + + + K L +
Sbjct: 373 PKLKICLFSATMNQQVEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKLLAVR 432
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L+Q E ++FT S E H L L G I + + Q R +K FR G
Sbjct: 433 QLIQKGLEPPILIFTQSKERAHDLFQELIFDG---INVDVIHSERTQFQRDTIVKKFRMG 489
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477
KI VL+ ++ M RGMD +GVN V+N+D P + +YIHR GRT RAG+ G +TL
Sbjct: 490 KIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTL 543
Score = 120 (47.3 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 38/108 (35%), Positives = 57/108 (52%)
Query: 16 RSPVDVSLFEDCPLDHLPCLDPRLKVA---LQNM---GISSLFPVQVAVWQETIGPGLFE 69
R VD + D P+ L+ R KV L N+ G P+Q+ V I L E
Sbjct: 182 RIKVDGTDIPD-PMTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQV----IPILLKE 236
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
R++ +PTGSGKT S+++PI+Q L R++++ PTR+LA Q+
Sbjct: 237 REVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVIIAPTRELAQQI 284
Score = 65 (27.9 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 213 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
DIL+ TP RL+ I +L + YLV DE D+L + +Q + V+
Sbjct: 320 DILITTPLRLVYLIKENL-LSLNKVEYLVFDEADKLFDKNFQEQVDIVV 367
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 211 (79.3 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 58/177 (32%), Positives = 93/177 (52%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATL + + A+ L P+ + + KL E+L+ KP L+ LL+
Sbjct: 214 VLFSATLPKLLVEFARAGLTEPMLIRL-DVESKLSEQLKLAFFHVRGDDKPAVLLHLLRC 272
Query: 369 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ +++ +VF ++ T L LL G I YS L Q+ R + F GK Q
Sbjct: 273 VVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHI--YSSLD-QTARKINIAKFAHGKCQ 329
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
VL+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DE+
Sbjct: 330 VLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEM 386
Score = 102 (41.0 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ V + ++TI L RD+ + TGSGKT + LP+ + L + RAL++ PTR
Sbjct: 56 YKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERLKAPSPSGARALILSPTR 115
Query: 112 DLALQ 116
+LALQ
Sbjct: 116 ELALQ 120
Score = 96 (38.9 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L +L
Sbjct: 146 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIL 204
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 197 (74.4 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+ ++A+ + P + +P ++ + L + K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDI 237
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
E IVF + L LN G I G Q+ R L+ F+EG I+VL
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH---GDLTQAKRMSVLRKFKEGSIEVL 294
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G + E + K
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 489 L 489
+
Sbjct: 355 I 355
Score = 111 (44.1 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L ++++MG P+Q ETI L +D+ + TG+GKT ++ LP++ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQA----ETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV 64
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
++ +V+ PTR+LA+QV
Sbjct: 65 DTHK-ESVQGIVIAPTRELAIQV 86
Score = 93 (37.8 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ +E+ ++ K ++ Y +D+ ++ L+ I+V TPGR++DHIN + L++
Sbjct: 86 VGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR-KTLRLQN 144
Query: 237 LCYLVVDETDRLLREAY 253
+ +V+DE D +L +
Sbjct: 145 VETVVLDEADEMLNMGF 161
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 197 (74.4 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+ ++A+ + P + +P ++ + L + K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDI 237
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
E IVF + L LN G I G Q+ R L+ F+EG I+VL
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH---GDLTQAKRMSVLRKFKEGSIEVL 294
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G + E + K
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 489 L 489
+
Sbjct: 355 I 355
Score = 111 (44.1 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L ++++MG P+Q ETI L +D+ + TG+GKT ++ LP++ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQA----ETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV 64
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
++ +V+ PTR+LA+QV
Sbjct: 65 DTHK-ESVQGIVIAPTRELAIQV 86
Score = 93 (37.8 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ +E+ ++ K ++ Y +D+ ++ L+ I+V TPGR++DHIN + L++
Sbjct: 86 VGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR-KTLRLQN 144
Query: 237 LCYLVVDETDRLLREAY 253
+ +V+DE D +L +
Sbjct: 145 VETVVLDEADEMLNMGF 161
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 197 (74.4 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+ ++A+ + P + +P ++ + L + K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDI 237
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
E IVF + L LN G I G Q+ R L+ F+EG I+VL
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH---GDLTQAKRMSVLRKFKEGSIEVL 294
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G + E + K
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 489 L 489
+
Sbjct: 355 I 355
Score = 111 (44.1 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L ++++MG P+Q ETI L +D+ + TG+GKT ++ LP++ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQA----ETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV 64
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
++ +V+ PTR+LA+QV
Sbjct: 65 DTHK-ESVQGIVIAPTRELAIQV 86
Score = 93 (37.8 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ +E+ ++ K ++ Y +D+ ++ L+ I+V TPGR++DHIN + L++
Sbjct: 86 VGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR-KTLRLQN 144
Query: 237 LCYLVVDETDRLLREAY 253
+ +V+DE D +L +
Sbjct: 145 VETVVLDEADEMLNMGF 161
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 197 (74.4 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+ ++A+ + P + +P ++ + L + K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDI 237
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
E IVF + L LN G I G Q+ R L+ F+EG I+VL
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH---GDLTQAKRMSVLRKFKEGSIEVL 294
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G + E + K
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 489 L 489
+
Sbjct: 355 I 355
Score = 111 (44.1 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L ++++MG P+Q ETI L +D+ + TG+GKT ++ LP++ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQA----ETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV 64
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
++ +V+ PTR+LA+QV
Sbjct: 65 DTHK-ESVQGIVIAPTRELAIQV 86
Score = 93 (37.8 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ +E+ ++ K ++ Y +D+ ++ L+ I+V TPGR++DHIN + L++
Sbjct: 86 VGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR-KTLRLQN 144
Query: 237 LCYLVVDETDRLLREAY 253
+ +V+DE D +L +
Sbjct: 145 VETVVLDEADEMLNMGF 161
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 197 (74.4 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+ ++A+ + P + +P ++ + L + K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDI 237
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
E IVF + L LN G I G Q+ R L+ F+EG I+VL
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH---GDLTQAKRMSVLRKFKEGSIEVL 294
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G + E + K
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 489 L 489
+
Sbjct: 355 I 355
Score = 111 (44.1 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L ++++MG P+Q ETI L +D+ + TG+GKT ++ LP++ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQA----ETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV 64
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
++ +V+ PTR+LA+QV
Sbjct: 65 DTHK-ESVQGIVIAPTRELAIQV 86
Score = 93 (37.8 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ +E+ ++ K ++ Y +D+ ++ L+ I+V TPGR++DHIN + L++
Sbjct: 86 VGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR-KTLRLQN 144
Query: 237 LCYLVVDETDRLLREAY 253
+ +V+DE D +L +
Sbjct: 145 VETVVLDEADEMLNMGF 161
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 203 (76.5 bits), Expect = 6.2e-25, Sum P(3) = 6.2e-25
Identities = 62/216 (28%), Positives = 95/216 (43%)
Query: 312 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 371
SAT ++ LA L+ + + G + IC KP LV LL +
Sbjct: 424 SATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISP 483
Query: 372 --------EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
K IVF + + ++ G I G + Q+ R LK FR G
Sbjct: 484 IKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIH---GDKTQNERDSVLKDFRNG 540
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
K +L+++D +RG+DVE + V+NYD P + Y+HR GRT R QLG +T D
Sbjct: 541 KSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNA 600
Query: 484 KRFKKLLQKADNDSCPIHSIPS-SLIESLRPVYKSG 518
K+ ++L+ + PS +L++ R + SG
Sbjct: 601 KQARELISVLEEAG----QTPSQALLDLARSMPSSG 632
Score = 114 (45.2 bits), Expect = 6.2e-25, Sum P(3) = 6.2e-25
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
++L V++++ATPGRL+D + R L+ YLV+DE DR+L ++ + +++ R
Sbjct: 357 RDLDRGVEVIIATPGRLIDFLE-NRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 415
Query: 266 SDNE 269
D +
Sbjct: 416 PDRQ 419
Score = 95 (38.5 bits), Expect = 6.2e-25, Sum P(3) = 6.2e-25
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVNSARCKY 124
RDL + TGSGKTL+Y LP + + N+ +R ALV+ PTR+LA Q+ S Y
Sbjct: 275 RDLVGIAQTGSGKTLAYMLPAIVHIGNQPP-IIRGEGPIALVLAPTRELAQQIQSVVRDY 333
Query: 125 --CCK 127
CK
Sbjct: 334 GHLCK 338
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 197 (74.4 bits), Expect = 6.2e-25, Sum P(3) = 6.2e-25
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+ ++A+ + P + +P ++ + L + K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDI 237
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
E IVF + L LN G I G Q+ R L+ F+EG I+VL
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH---GDLTQAKRMSVLRKFKEGSIEVL 294
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G + E + K
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 489 L 489
+
Sbjct: 355 I 355
Score = 111 (44.1 bits), Expect = 6.2e-25, Sum P(3) = 6.2e-25
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L ++++MG P+Q ETI L +D+ + TG+GKT ++ LP++ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQA----ETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV 64
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
++ +V+ PTR+LA+QV
Sbjct: 65 DTHK-ESVQGIVIAPTRELAIQV 86
Score = 93 (37.8 bits), Expect = 6.2e-25, Sum P(3) = 6.2e-25
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 180 IADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEH 236
+ +E+ ++ K ++ Y +D+ ++ L+ I+V TPGR++DHIN + L++
Sbjct: 86 VGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR-KTLRLQN 144
Query: 237 LCYLVVDETDRLLREAY 253
+ +V+DE D +L +
Sbjct: 145 VETVVLDEADEMLNMGF 161
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 216 (81.1 bits), Expect = 7.3e-25, Sum P(3) = 7.3e-25
Identities = 58/190 (30%), Positives = 88/190 (46%)
Query: 312 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG- 370
SAT D + +L+L + ++ G R E +E L S+ L + L G
Sbjct: 348 SATFAHDVEEWCKLNLDSIVLVSVG-ARNSAAETVEQELLFVGSETGKLTAMRELVKKGF 406
Query: 371 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 430
+VF S+E L L + G + + + Q+Q R + +FR GKI VL+
Sbjct: 407 APPVLVFVQSIERAKELFHELIYEG-INVDVIHADKTQQQ--RDNVVHSFRAGKIWVLIC 463
Query: 431 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 490
+ + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+ + +
Sbjct: 464 TALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKPLLRSIA 523
Query: 491 QKADNDSCPI 500
CP+
Sbjct: 524 NVIQRAGCPV 533
Score = 120 (47.3 bits), Expect = 7.3e-25, Sum P(3) = 7.3e-25
Identities = 30/101 (29%), Positives = 55/101 (54%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ ++ + P++ +Q G P+Q+ + I L R+L ++P
Sbjct: 151 PDPIATFDQLQKEYK--IHPKVIENIQAAGFQVPTPIQM----QAIPVMLHGRELLASAP 204
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
TGSGKTL++ +P++ L + RAL++ PTR+LA Q +
Sbjct: 205 TGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTRELASQTH 245
Score = 65 (27.9 bits), Expect = 7.3e-25, Sum P(3) = 7.3e-25
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 212 VDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 251
VDILV TP RL+ + L + +LVVDE+D+L +
Sbjct: 281 VDILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFED 321
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 145 (56.1 bits), Expect = 7.8e-25, Sum P(4) = 7.8e-25
Identities = 42/142 (29%), Positives = 76/142 (53%)
Query: 304 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 361
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 362 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420
L ALL+ SL K ++F +++E +RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFS---IPSCVLNGELPLRSRCHIISQF 304
Query: 421 REGKIQVLVSSDAMTRGMDVEG 442
+G ++++DA G V+G
Sbjct: 305 NQGLYDCVIATDAEILGPQVKG 326
Score = 129 (50.5 bits), Expect = 7.8e-25, Sum P(4) = 7.8e-25
Identities = 39/120 (32%), Positives = 68/120 (56%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVNSA---RCKYCCKNIFGLIADHSIAE 140
++Q+L ++ + +R LV++PT++LA Q + YC +++ +A+ S AE
Sbjct: 65 MLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDV--RVANVSAAE 122
Score = 102 (41.0 bits), Expect = 7.8e-25, Sum P(4) = 7.8e-25
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 434 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 478
+ RG+D V+ V+N+D P + Y+HRAGRTARA G T +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFV 389
Score = 69 (29.3 bits), Expect = 7.8e-25, Sum P(4) = 7.8e-25
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
L D++V TP R++ H+ + L LVVDE D L ++ L ++L
Sbjct: 131 LMEKPDVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLL 184
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 259 (96.2 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 61/190 (32%), Positives = 102/190 (53%)
Query: 301 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359
K PR + L SAT+T+ +KL + L P ++ +RYK + L+ + + +K K
Sbjct: 213 KVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVS-SRYKTVDNLKQHYIFVPNKYKE 271
Query: 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419
YLV LL IVF ++ +T ++ +L G + + G Q R +L
Sbjct: 272 TYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLH---GQMSQEKRLGSLNK 328
Query: 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479
F+ ++LV +D RG+D+ V+ V+NYD P+ K Y+HR GRTARAG+ G T++
Sbjct: 329 FKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVT 388
Query: 480 KDEVKRFKKL 489
+ +V+ ++K+
Sbjct: 389 QYDVEAYQKI 398
Score = 131 (51.2 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 214 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRF 272
I+VATPGRL+DH+ T+GF L+ L +L++DE DR+L ++ L +L+ + R F
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224
Query: 273 SDASTFLPSAF--GSLKTIRRCGVERGFK 299
S T S SL+ R V +K
Sbjct: 225 SATMTKKVSKLERASLRDPARVSVSSRYK 253
Score = 91 (37.1 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ Q + L +D+ + TGSGKT ++A+P++Q+L + + LV+ PTR+LA Q+
Sbjct: 70 IQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP-QAFFCLVLTPTRELAFQI 128
Score = 57 (25.1 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 133 IADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 192
+ DH A C+ ++ Q+ F A+ +GL + VG +A + L +RP
Sbjct: 106 LLDHPQAFFCLVLTPTRELAF-QIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164
Query: 193 L 193
+
Sbjct: 165 I 165
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 202 (76.2 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 53/202 (26%), Positives = 98/202 (48%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353
++ K P R ++ SATL ++ L P + + + +E
Sbjct: 170 IQAVLKQVPAQRQT-LLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAI 227
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
+S K ++ L++S ++ ++F+ + + +L LN G + + + G Q R
Sbjct: 228 DSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLG---VATQSFHGDLSQGAR 284
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
K L+ F++G +QVLV++D RG+D+ + V+N++ P + YIHR GRT RAG G
Sbjct: 285 EKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGL 344
Query: 474 CFTLLHKDE---VKRFKKLLQK 492
TL +++ ++ + LL K
Sbjct: 345 AITLFSQEDALLLEEVETLLDK 366
Score = 147 (56.8 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ +L L +G P+QV E I L ++D+ + TG+GKT ++ALPI+Q L
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQV----EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVNSARCKY 124
S+ A + +RALV++PTR+LALQV + KY
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKY 98
Score = 108 (43.1 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 32/106 (30%), Positives = 48/106 (45%)
Query: 189 KRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 245
K + GI Y + Q+ + +D+L+ATPGRL+DH+ L L LV DE
Sbjct: 100 KGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEA 158
Query: 246 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 291
DR+L + + VL+ + + A T S F K + R
Sbjct: 159 DRMLDMGFMDEIQAVLKQVPAQRQTLLFSA-TLDDSIFSFSKNLLR 203
Score = 41 (19.5 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVD 213
QV+ F A + VG+A G SI E + + ++ I P +L L Q A++
Sbjct: 90 QVQQSFVKYAKGTDIRVGIAYGGVSI--EAQQAVFNAGIDVLIA-TPGRLLDHLRQGALN 146
Query: 214 I 214
+
Sbjct: 147 L 147
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 202 (76.2 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 53/202 (26%), Positives = 98/202 (48%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353
++ K P R ++ SATL ++ L P + + + +E
Sbjct: 170 IQAVLKQVPAQRQT-LLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAI 227
Query: 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413
+S K ++ L++S ++ ++F+ + + +L LN G + + + G Q R
Sbjct: 228 DSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLG---VATQSFHGDLSQGAR 284
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
K L+ F++G +QVLV++D RG+D+ + V+N++ P + YIHR GRT RAG G
Sbjct: 285 EKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGL 344
Query: 474 CFTLLHKDE---VKRFKKLLQK 492
TL +++ ++ + LL K
Sbjct: 345 AITLFSQEDALLLEEVETLLDK 366
Score = 147 (56.8 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ +L L +G P+QV E I L ++D+ + TG+GKT ++ALPI+Q L
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQV----EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVNSARCKY 124
S+ A + +RALV++PTR+LALQV + KY
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKY 98
Score = 108 (43.1 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 32/106 (30%), Positives = 48/106 (45%)
Query: 189 KRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 245
K + GI Y + Q+ + +D+L+ATPGRL+DH+ L L LV DE
Sbjct: 100 KGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEA 158
Query: 246 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 291
DR+L + + VL+ + + A T S F K + R
Sbjct: 159 DRMLDMGFMDEIQAVLKQVPAQRQTLLFSA-TLDDSIFSFSKNLLR 203
Score = 41 (19.5 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVD 213
QV+ F A + VG+A G SI E + + ++ I P +L L Q A++
Sbjct: 90 QVQQSFVKYAKGTDIRVGIAYGGVSI--EAQQAVFNAGIDVLIA-TPGRLLDHLRQGALN 146
Query: 214 I 214
+
Sbjct: 147 L 147
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 192 (72.6 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 53/184 (28%), Positives = 86/184 (46%)
Query: 299 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 358
K+ P R + SAT+ + LA L +P ++ R+E E K
Sbjct: 180 KNVPSKRQT-LFFSATMPKAVESLAATFLRNPAEVSVAPPA-TTAGRIEQRVCFVEQPEK 237
Query: 359 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 418
L+ ++ IVFT + H ++ + I G + QS R K L+
Sbjct: 238 ASLLIEKIRDPELRSAIVFT---RTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALE 294
Query: 419 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 478
AF+ G++ +LV++D RG+ V+ + +V+NYD P + ++HR GRTARAG G +
Sbjct: 295 AFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFC 354
Query: 479 HKDE 482
+DE
Sbjct: 355 SRDE 358
Score = 109 (43.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L R+ +L G ++ P+Q ++ I + RD+ + TG+GKTL++A PI+ L
Sbjct: 14 LTGRILTSLTKAGYTAPTPIQ----EQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRL 69
Query: 95 SNRA----VRCLRALVVLPTRDLALQV 117
S A VR R LV+ PTR+LA Q+
Sbjct: 70 SRNASPAPVRGTRVLVLAPTRELAGQI 96
Score = 94 (38.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ ILVATPGRL+D + R +L+ + L++DE D++L + L + +
Sbjct: 124 IRQLERGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNV 182
Query: 265 RSDNENRFSDASTFLPSAFGSL 286
S + F A+ +P A SL
Sbjct: 183 PSKRQTLFFSAT--MPKAVESL 202
Score = 46 (21.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 488 KLLQKADNDSCPIHSIPS-SLIESLRPVYKSGDV 520
K L KAD DS IH S S E +K+G V
Sbjct: 268 KRLAKADIDSVAIHGNKSQSQREKALEAFKAGRV 301
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 231 (86.4 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 87/310 (28%), Positives = 142/310 (45%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 267
L+ ++IL++TPGRL+DHI +T+ + +L++DE DR+L ++ L +L ++
Sbjct: 255 LRKGINILISTPGRLVDHIKSTKNIHFRQIRWLILDEADRILDLGFEKDLTVILNAVNAE 314
Query: 268 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 327
+ R L SA + R + D P + ++ + P A L+
Sbjct: 315 CQER----QNVLLSATLTEGVARLADIS--LHD---PVSISVLDESHDVSSPESEAFLEA 365
Query: 328 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLG---EEKCIVFTSSVES 383
P T + +P LE + ++ SKL+ + L A +LQ ++K IVF SS E
Sbjct: 366 SPPQ-ATDELDGFAIPAGLEQHVVVVPSKLRLVCLAAFILQKCKFERDQKVIVFFSSCEL 424
Query: 384 T--HR---LCTLLNHFGELR----------IK-IKEYSGLQRQSVRSKTLKAFREGKIQV 427
H L TLL+ G L +K ++ +S L+++ R+ + F K +
Sbjct: 425 VEFHYTLFLQTLLSGSGALAPEHLPSTSTPLKFLRLHSALEQEE-RTAVFQDFTHSKTGI 483
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
L +D RG+D+ V +V Y+ P+ YIHR GRTAR G G +L E +
Sbjct: 484 LFCTDIAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLVLAPSEAEYVN 543
Query: 488 KLLQKADNDS 497
L N S
Sbjct: 544 SLASHKINVS 553
Score = 129 (50.5 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 44/120 (36%), Positives = 65/120 (54%)
Query: 7 KSMPVLPWMRSPVDVSLFEDC-PLDHLPCLD--PRLKVALQN-MGISSLFPVQVAVWQET 62
K+ P +P + PV + E D LD P L + + +SS+ VQ +++
Sbjct: 108 KNNPEIPELPRPVVKQVQEKVFTSDAFQALDLHPHLISTINTVLKMSSMTSVQ----KQS 163
Query: 63 IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQ 116
I P L E RD + S TGSGKTL+Y +P+VQ+L + R AL+++PTR+LALQ
Sbjct: 164 I-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMQSKIQRGDGPYALILVPTRELALQ 222
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 196 (74.1 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 62/202 (30%), Positives = 103/202 (50%)
Query: 311 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 370
L+ T +DP K+ ++ P T ET + +L + + K + L ++++
Sbjct: 197 LAKTFQKDPKKI---EVTRPA--QTAETISQFVVKLPTN----DGKARRTALRRVIEATN 247
Query: 371 EEKCIVFTS-SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429
+ IVF + VE +L H G I G QSVRS+TL+ FR+GK+++LV
Sbjct: 248 VKNGIVFCNRKVEVDIVAASLTKH-GHDAAPIH---GDLPQSVRSETLQRFRDGKLKLLV 303
Query: 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 489
+SD RG+D+ V +V N+ P + Y+HR GRT RAG+ G +T++ + K + +
Sbjct: 304 ASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFV 363
Query: 490 LQKADNDSCPIHSIPSSLIESL 511
++ D P +P L+E L
Sbjct: 364 VKMIKKD-VP-EFMPEGLLEEL 383
Score = 103 (41.3 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA-VRCLRALVVLP 109
+ + + +E I L D+ + TG+GKT ++ LP++Q LS RA R R L++ P
Sbjct: 24 YTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRARARMPRCLILCP 83
Query: 110 TRDLALQVNSARCKY 124
TR+LA QV KY
Sbjct: 84 TRELAAQVAENFEKY 98
Score = 99 (39.9 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 193 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 249
L G+ + ++ L LQ VD+L+ATPGRLMD + RG + + L++DE DR+L
Sbjct: 109 LIGGVSFKEQETL--LQRGVDVLIATPGRLMDQFD--RGKLLMMGVETLIIDEADRML 162
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 235 (87.8 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 52/176 (29%), Positives = 96/176 (54%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT++++ LA+ +H P+ ++ G + P ++E + + + K L ++ +
Sbjct: 187 LLFSATMSEEVRGLAKRTIHKPVEISIGADKASKP-KIEQWLVTVDKANKSALLSHIITT 245
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
++ ++F + +L + L G + I +SG + Q +R K L F+ GKI+ L
Sbjct: 246 QNWQQALIFIETKHGAAKLVSQLEKRGIVAESI--HSG-RAQDIREKILNDFKSGKIKFL 302
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
V++ RG+D+ ++ V+NYD PA + YIHR GRT RAG G +L+ KD +
Sbjct: 303 VATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFR 358
Score = 111 (44.1 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 38 RLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
+L + N I+ L + A+ Q+ I L +D+ + TG+GKT S+ LP+++ L++
Sbjct: 7 KLSTPILN-AIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNS 65
Query: 97 ---------RAVRCLRALVVLPTRDLALQVNSARCKY 124
RA R +RAL+++PTR+LA+QV ++ +Y
Sbjct: 66 QYKETGKKLRAKR-IRALILVPTRELAVQVEASISQY 101
Score = 102 (41.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 51/192 (26%), Positives = 84/192 (43%)
Query: 173 LAVG-QSSIADEISEL-IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LAV ++SI+ L I + G+ D ++ Q L VDILVATPGRL+D + R
Sbjct: 90 LAVQVEASISQYAKYLDISSMAMYGGV--DAQEQKQRLIWGVDILVATPGRLLD-MTHQR 146
Query: 231 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK-TI 289
+ L LV+DE DR+L + + +++ +N A T G K TI
Sbjct: 147 VLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNLLFSA-TMSEEVRGLAKRTI 205
Query: 290 RR-CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL----DLHHPL-FLTTGETRYKLP 343
+ + G P++ + +++ L+ + + L F+ T KL
Sbjct: 206 HKPVEISIGADKASKPKIEQWLVTVDKANKSALLSHIITTQNWQQALIFIETKHGAAKLV 265
Query: 344 ERLESYKLICES 355
+LE ++ ES
Sbjct: 266 SQLEKRGIVAES 277
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 178 (67.7 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 56/188 (29%), Positives = 93/188 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALL 366
M+ SAT + ++L +L LH +P+ ++ E + E L+ ++ S + L L L
Sbjct: 250 MLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFL 309
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ +K +VF SS S LLN+ + I G Q+Q R+ T F + +
Sbjct: 310 KKNKTKKVMVFFSSCNSVKFHHELLNY---IDIPCMSIHGKQKQQKRTTTFFQFCQAETG 366
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEVKR 485
+L+ +D RG+D+ V+ +V YD + YIHR GRTAR G+ +L +E+
Sbjct: 367 ILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEELG- 425
Query: 486 FKKLLQKA 493
F + L+ A
Sbjct: 426 FLRYLKAA 433
Score = 122 (48.0 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 184 ISELIKRPKLEAGICYDPEDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYL 240
+SEL++ L G+ + E L V ILVATPGRL+DH+ T F + ++ L
Sbjct: 160 LSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCL 219
Query: 241 VVDETDRLLREAYQAWLPTVLQ 262
++DE DR+L ++ + VL+
Sbjct: 220 IIDEADRILDIGFEIEMQQVLR 241
Score = 100 (40.3 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 25/85 (29%), Positives = 49/85 (57%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
++ L A+Q +G +++ +Q ++I P L +D+ ++ TGSGKTL++ LP ++ L
Sbjct: 75 VNANLLKAVQGLGFTTMTEIQA----KSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELL 130
Query: 95 SN---RAVRCLRALVVLPTRDLALQ 116
+ ++V PTR+L++Q
Sbjct: 131 HKLNWKQHNGTGVIIVSPTRELSMQ 155
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 195 (73.7 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 53/205 (25%), Positives = 99/205 (48%)
Query: 294 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 346
+ RGFKD+ Y P ++LSAT+ QD ++ + P+ + + L
Sbjct: 174 LSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIK 233
Query: 347 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 406
+ Y + + + K L L +++ + ++F ++ ++ L E + G
Sbjct: 234 QFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNT---RRKVDWLTEQLTERDFTVSSMHG 290
Query: 407 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 466
Q+ R + FR G ++L+++D + RG+DV+ V+ V+NYD PA + YIHR GR
Sbjct: 291 DMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGG 350
Query: 467 RAGQLGRCFTLLHKDEVKRFKKLLQ 491
R G+ G + D+V+ +++ Q
Sbjct: 351 RFGRKGVSINFVTNDDVRMMREIEQ 375
Score = 112 (44.5 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK L GI + F A+ Q I P L ERD+ + +G+GKT ++++ ++Q +
Sbjct: 23 DMNLKPELLR-GIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI 81
Query: 95 SNRAVRCLRALVVLPTRDLALQV 117
+C +AL++ PTR+LA Q+
Sbjct: 82 DTSLKQC-QALILAPTRELAQQI 103
Score = 81 (33.6 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 203 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
D + LQ+ V ++V TPGR+ D I R + + V+DE D +L ++ + + Q
Sbjct: 129 DDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQ 187
Query: 263 L 263
L
Sbjct: 188 L 188
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 216 (81.1 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 58/190 (30%), Positives = 88/190 (46%)
Query: 312 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG- 370
SAT D + +L+L + ++ G R E +E L S+ L + L G
Sbjct: 347 SATFAHDVEEWCKLNLDSIVLVSVG-ARNSAAETVEQELLFVGSETGKLTAMRELVKKGF 405
Query: 371 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 430
+VF S+E L L + G + + + Q+Q R + +FR GKI VL+
Sbjct: 406 APPVLVFVQSIERAKELFHELIYEG-INVDVIHADKTQQQ--RDNVVHSFRAGKIWVLIC 462
Query: 431 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 490
+ + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+ + +
Sbjct: 463 TALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKPLLRSIA 522
Query: 491 QKADNDSCPI 500
CP+
Sbjct: 523 NVIQRAGCPV 532
Score = 120 (47.3 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 30/101 (29%), Positives = 55/101 (54%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ ++ + P++ +Q G P+Q+ + I L R+L ++P
Sbjct: 151 PDPIATFDQLQKEYK--IHPKVIENIQAAGFQVPTPIQM----QAIPVMLHGRELLASAP 204
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
TGSGKTL++ +P++ L + RAL++ PTR+LA Q +
Sbjct: 205 TGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTRELASQTH 245
Score = 61 (26.5 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 213 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 251
DILV TP RL+ + L + +LVVDE+D+L +
Sbjct: 281 DILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFED 320
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 183 (69.5 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 367
M+ SAT + +L+ L+ P ++ E T E+L Y++ + + K L L+
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLV-YRV--DKRRKAELLSELVG 237
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ +VF S+ E L L G I + G + Q R++ L F+ GK++V
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDG---ISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 478
LV++D RG+D++ + V+N + P + Y+HR GRT RAG GR + +
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFV 345
Score = 121 (47.7 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 36/97 (37%), Positives = 53/97 (54%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D L P L A+ G L VQ Q+ I L +D+ + TG+GKT ++ALP
Sbjct: 4 DTLGLSSPLLN-AITECGYQQLTQVQ----QQVIPLALVGKDIMACAQTGTGKTAAFALP 58
Query: 90 IVQTLSNRAVR--CLRALVVLPTRDLALQVNSARCKY 124
+++ L+ + LRALV+ PTR+LA+QV + KY
Sbjct: 59 VLEQLAAKPADKPLLRALVMTPTRELAIQVCANIQKY 95
Score = 90 (36.7 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249
++ VDILVATPGRL D I L + LV+DE DR+L
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRML 159
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 183 (69.5 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 367
M+ SAT + +L+ L+ P ++ E T E+L Y++ + + K L L+
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLV-YRV--DKRRKAELLSELVG 237
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ +VF S+ E L L G I + G + Q R++ L F+ GK++V
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDG---ISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 478
LV++D RG+D++ + V+N + P + Y+HR GRT RAG GR + +
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFV 345
Score = 121 (47.7 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 36/97 (37%), Positives = 53/97 (54%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D L P L A+ G L VQ Q+ I L +D+ + TG+GKT ++ALP
Sbjct: 4 DTLGLSSPLLN-AITECGYQQLTQVQ----QQVIPLALVGKDIMACAQTGTGKTAAFALP 58
Query: 90 IVQTLSNRAVR--CLRALVVLPTRDLALQVNSARCKY 124
+++ L+ + LRALV+ PTR+LA+QV + KY
Sbjct: 59 VLEQLAAKPADKPLLRALVMTPTRELAIQVCANIQKY 95
Score = 90 (36.7 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249
++ VDILVATPGRL D I L + LV+DE DR+L
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRML 159
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 171 (65.3 bits), Expect = 2.1e-24, Sum P(4) = 2.1e-24
Identities = 56/188 (29%), Positives = 86/188 (45%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL-PERLESYKLICESKLKPLYLVALLQ 367
++ SAT T+ LA+L L P +++ E P+ L + ++K L + ++
Sbjct: 322 LLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKLNMLFSFIK 381
Query: 368 SLGEEKCIVFTSS---VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424
+ K IVF +S V H LLN G + G +Q R + + F + K
Sbjct: 382 THLTSKIIVFFASCKQVRFAHETFKLLNP-GTTLFPLH---GKMKQWTRLEVFEDFCKKK 437
Query: 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
L ++D RG+D V V+ D P I+TYIHR GRTAR G+ T+L E
Sbjct: 438 AGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEKD 497
Query: 485 RFKKLLQK 492
L++K
Sbjct: 498 GMVNLMEK 505
Score = 130 (50.8 bits), Expect = 2.1e-24, Sum P(4) = 2.1e-24
Identities = 35/101 (34%), Positives = 54/101 (53%)
Query: 180 IADEISELIKRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHL 237
I D + + K AG+ +V QE +A++IL+ATPGRL+ H++ T GF +L
Sbjct: 229 IFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKINAMNILIATPGRLLQHMDETYGFDCSNL 288
Query: 238 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 277
LV+DE DR+L + L ++++ L R FS T
Sbjct: 289 KILVLDEADRILDLGFSKCLNSIVENLPRERQTLLFSATQT 329
Score = 110 (43.8 bits), Expect = 2.1e-24, Sum P(4) = 2.1e-24
Identities = 39/97 (40%), Positives = 53/97 (54%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F+D P+ L LK AL L +Q A T L RD+ + TGSGKT
Sbjct: 143 FKDLPISQLT-----LK-ALTESKFLKLTDIQRASLPHT----LCGRDILGAAKTGSGKT 192
Query: 84 LSYALPIVQTL-SNRAVRC--LRALVVLPTRDLALQV 117
LS+ LPI++TL NR R + A+V+ PTR+LA+Q+
Sbjct: 193 LSFILPILETLWRNRWGRDDGIGAIVLSPTRELAIQI 229
Score = 38 (18.4 bits), Expect = 2.1e-24, Sum P(4) = 2.1e-24
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 503 IPSSLIESLRPVYKSGDV 520
+P+S IE ++ + GDV
Sbjct: 747 LPTSYIEKVKSEVEKGDV 764
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 190 (71.9 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 56/188 (29%), Positives = 95/188 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALL 366
M+ SAT T L++L L P+++ + + + LE ++C S+ + L L L
Sbjct: 369 MLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFL 428
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++K +VF SS S L N+ + + + G Q+Q+ R+ T F +
Sbjct: 429 KKNRKKKVMVFFSSCMSVKYHHELFNY---IDLPVTSIHGKQKQTKRTTTFFQFCNAESG 485
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR-AGQLGRCFTLLHKDEVKR 485
+L+ +D RG+D+ V+ +V YD P + YIHR GRTAR +G G L+ +E+
Sbjct: 486 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELG- 544
Query: 486 FKKLLQKA 493
F + L+ A
Sbjct: 545 FLRYLKAA 552
Score = 119 (46.9 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
++L ++ILVATPGRL+DH+ + F ++L L++DE DR+L ++ L ++ L
Sbjct: 304 EKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLP 363
Query: 266 SDNENR-FSDASTFLPSAFGSL 286
+ FS T A L
Sbjct: 364 KRRQTMLFSATQTARIEALSKL 385
Score = 92 (37.4 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAV- 99
A++ MG + + +Q +++ P L RDL + TGSGKTL++ +P V+ ++ R +
Sbjct: 201 AIKEMGFTEMTEIQ----SKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMP 256
Query: 100 -RCLRALVVLPTRDLALQ 116
+++ PTR+L++Q
Sbjct: 257 RNGTGVIIISPTRELSMQ 274
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 207 (77.9 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 58/199 (29%), Positives = 92/199 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-----ESKLKPLYLV 363
++ SAT ++ +LA+ L + + + G + +C E KLK L
Sbjct: 463 LMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSD 522
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
S K I+F + L + FG ++ G + QS R L+ FR G
Sbjct: 523 IYDTSESPGKIIIFVETKRRVDNLVRFIRSFG---VRCGAIHGDKSQSERDFVLREFRSG 579
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
K +LV++D RG+DV+G+ V+N+D P + YIHR GRT R+ G F K+
Sbjct: 580 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 639
Query: 484 KRFKKL---LQKADNDSCP 499
K+ K L L++A+ + P
Sbjct: 640 KQAKALVDVLREANQEINP 658
Score = 112 (44.5 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
+++LQ +I++ATPGRL+D ++A G T L+ YLV+DE DR+L ++ + ++
Sbjct: 398 MRDLQRGCEIVIATPGRLIDFLSA--GSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQ 455
Query: 264 TRSDNE 269
R D +
Sbjct: 456 IRPDRQ 461
Score = 81 (33.6 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 30/98 (30%), Positives = 47/98 (47%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
HLP D +K ++ G + +Q W + F + I + TGSGKTL Y LP
Sbjct: 287 HLP--DYVMK-EIRRQGYKAPTAIQAQGWPIAMSGSNF---VGI-AKTGSGKTLGYILPA 339
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVNSARCKY 124
+ ++N+ ALV+ PTR+LA Q+ ++
Sbjct: 340 IVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEF 377
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 201 (75.8 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 66/219 (30%), Positives = 103/219 (47%)
Query: 274 DASTFLPSAFGS-LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL---HH 329
+A L GS L + C F P R ++ +ATLT + L +
Sbjct: 249 EADRLLSPGPGSMLPDVETC---LSFLPGPSQRQT-LLFTATLTPEVRALKSMPQTPGKP 304
Query: 330 PLFLTTGETRYK--LPERLESYKLICESKLKPLYLVALLQSLGE--EKCIVFTSSVESTH 385
P+F+T T K +P L + + + +L LL + + IVFT++ +S
Sbjct: 305 PIFVTEISTEAKDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSAD 364
Query: 386 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 445
L LL G ++ L QS R+ L FR +VLV++D +RG+D+ V+
Sbjct: 365 LLERLLRSLGH---RVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSL 421
Query: 446 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484
VVN++ P Y+HR GRTARAG+ G TL+ + +V+
Sbjct: 422 VVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVGQRDVQ 460
Score = 97 (39.2 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTV 260
EL ++VATPGRL DHIN + T L+ + +V+DE DRLL + LP V
Sbjct: 209 ELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDV 265
Score = 94 (38.1 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLS 95
P L +L M + +Q A E + G RD CI S TGSGKT+++++PI+Q +
Sbjct: 104 PWLVGSLTTMAVRKPTAIQRACIPEIL-KG---RD-CIGGSRTGSGKTIAFSVPILQKWA 158
Query: 96 NRAVRCLRALVVLPTRDLALQV 117
A+++ PTR+LALQ+
Sbjct: 159 EDPFGIF-AVILTPTRELALQI 179
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 219 (82.2 bits), Expect = 4.5e-24, Sum P(4) = 4.5e-24
Identities = 59/195 (30%), Positives = 95/195 (48%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT +D LA+ L +FL+ G E + + E K YL+ +L +
Sbjct: 368 LMFSATFPRDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHT 426
Query: 369 LGEEKC-IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
L E ++F VE+ TL ++ G + Q R + L+ FR G+ +
Sbjct: 427 LPPEGLTLIF---VETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSI 483
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VK 484
+V++ +RG+D+ V +V+NYD P I Y+HR GRT RAG G+ +++ K
Sbjct: 484 MVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAK 543
Query: 485 RFKKLLQKADNDSCP 499
+LLQ+A N CP
Sbjct: 544 ELIELLQEA-NQECP 557
Score = 97 (39.2 bits), Expect = 4.5e-24, Sum P(4) = 4.5e-24
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
++++ D+L ATPGRL+D I+ R +L ++ +LV+DE DR+L ++ P + +
Sbjct: 299 IRQIDQGCDLLSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFE---PQIRHIV 354
Query: 265 RSDNENRFSDASTFLPSA 282
+ + T + SA
Sbjct: 355 EGADMTSVEERQTLMFSA 372
Score = 64 (27.6 bits), Expect = 4.5e-24, Sum P(4) = 4.5e-24
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 18 PVDVSLFEDCPLDHL--PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN 75
PV+VS + P++ P L+ L LQN+ +S + V + +I RDL
Sbjct: 157 PVEVSGGDIEPVNEFTSPPLNSHL---LQNIKLSG-YTQPTPVQKNSIPIVTSGRDLMAC 212
Query: 76 SPTGSGKTLSYALPIV 91
+ TGSGKT + PI+
Sbjct: 213 AQTGSGKTAGFLFPIL 228
Score = 51 (23.0 bits), Expect = 4.5e-24, Sum P(4) = 4.5e-24
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 105 LVVLPTRDLALQVNSARCKYCCKN 128
L++ PTR+L Q++ K+C ++
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRS 282
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 213 (80.0 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 60/200 (30%), Positives = 98/200 (49%)
Query: 310 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 363
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 335 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 394
Query: 364 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 395 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 452
Query: 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 453 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPME- 511
Query: 484 KRFKKLLQKADNDSCPIHSI 503
+ + L+ N CP+ +
Sbjct: 512 ESYVTFLEI--NQKCPLQEM 529
Score = 94 (38.1 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVN 118
TGSGKTL++ +PI++ L R + + A+++ PTR+LA+QV+
Sbjct: 190 TGSGKTLAFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQVD 234
Score = 91 (37.1 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAW 256
+DV + + +I+VATPGRL D G L + L LV+DE DRLL ++A
Sbjct: 260 DDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEAS 319
Query: 257 LPTVLQ-LTRSDNENRFSDAST 277
+ T+L+ L + FS T
Sbjct: 320 INTILEFLPKQRRTGLFSATQT 341
Score = 37 (18.1 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 450
++ LK F++GKI + + +G+ G V D
Sbjct: 692 TRLLKKFKKGKI----TEEEFEKGLFSSGKGTVTTAD 724
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 195 (73.7 bits), Expect = 5.1e-24, Sum P(4) = 5.1e-24
Identities = 54/181 (29%), Positives = 94/181 (51%)
Query: 309 MVLSATLTQDPNKLA---QLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVA 364
++ +AT+T +L Q + PL+L ET +P L+ + S+++ YLV
Sbjct: 190 LLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVH 249
Query: 365 LLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422
LL ++ I+F + + + ++L ELR+ +QR+ + S L FR
Sbjct: 250 LLTIPENAKKSAIIFVNRTRTAELIYSILRLL-ELRVTELHSEMVQRERINS--LGRFRA 306
Query: 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482
++LV++D +RG+D+ V V+N+D P YIHR GRTARAG+ G +++ + +
Sbjct: 307 EAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
Query: 483 V 483
V
Sbjct: 367 V 367
Score = 100 (40.3 bits), Expect = 5.1e-24, Sum P(4) = 5.1e-24
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 60 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
QE + + E CI + TGSGKT ++ALPI++ S + + AL++ PTR+LA+Q++
Sbjct: 34 QEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWS-KDPSGIFALILTPTRELAIQID 92
Score = 79 (32.9 bits), Expect = 5.1e-24, Sum P(4) = 5.1e-24
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAY 253
+L ++VATPGRL D I + T L + +LV+DE DRLL +
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
Score = 49 (22.3 bits), Expect = 5.1e-24, Sum P(4) = 5.1e-24
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191
Q+ + FAA+ + L L VG + + +L KRP
Sbjct: 90 QIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 204 (76.9 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 61/200 (30%), Positives = 96/200 (48%)
Query: 294 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLI 352
+ER + P R M+ SAT+ LA+ + P + + + E +
Sbjct: 193 IERILRQIPADRQ-SMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251
Query: 353 CESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 411
+ L + LV+ +LQ+ ++FT + + ++ L G + G Q
Sbjct: 252 AHA-LDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERG---FAVGAVHGDLGQL 307
Query: 412 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 471
R K LKAFR G I VLV++D RG+D++ V +V+NY P K Y+HR GRT RAG+
Sbjct: 308 AREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRT 367
Query: 472 GRCFTLLHKDEVKRFKKLLQ 491
G TL+ DE+ R+ + Q
Sbjct: 368 GVAVTLVDWDELPRWSMIDQ 387
Score = 98 (39.6 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVR 100
AL GI F +Q + T+ L D+ + TG GKT ++ +P++Q + S R
Sbjct: 24 ALGEEGIKRPFAIQ----ELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTR 79
Query: 101 CL----RALVVLPTRDLALQV 117
L RALVV+PTR+L LQV
Sbjct: 80 PLTGAPRALVVVPTRELCLQV 100
Score = 88 (36.0 bits), Expect = 6.5e-24, Sum P(3) = 6.5e-24
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 199 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 258
Y+P+ ++ L++ D++V TPGRL+D L L LV+DE D +L + +
Sbjct: 138 YEPQ--IEALRAGADVVVGTPGRLLDLCQQGH-LQLGGLSVLVLDEADEMLDLGFLPDIE 194
Query: 259 TVLQLTRSDNENRFSDAS 276
+L+ +D ++ A+
Sbjct: 195 RILRQIPADRQSMLFSAT 212
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 232 (86.7 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 87/326 (26%), Positives = 147/326 (45%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 267
L+ ++IL++TPGRL+DHI +T +L++DE DR+L ++ + +L ++
Sbjct: 219 LRKGINILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVTVILNALNAE 278
Query: 268 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 327
E R L SA T+ GV R D +++ ++ + + Q +
Sbjct: 279 RETR----QNVLLSA-----TLTE-GVTR-LADISLNDPIRISIADEIRESLKPALQTEK 327
Query: 328 H-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEK---CIVFTSSVE 382
+ + + +PE+L+ Y ++ SKL+ + L A +L+ EK I+F SS E
Sbjct: 328 EANSSSNRMDQENFAVPEKLKQYFMMVPSKLRLVTLAAFVLEKCKYEKQHKMIIFFSSCE 387
Query: 383 STHRLCTLLNHF--GEL-------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
LL + GEL +++ G Q R++ + F + K +
Sbjct: 388 QVEFHYELLVNVLSGELESEQPKRSSVSSVQLQFLRLHGNMEQEERTEVFQEFLKSKTGI 447
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
L+ +D RG+D+ V +V Y+ PA YIHR GRTAR G G +L E +
Sbjct: 448 LLCTDVAARGLDLPQVTWIVQYNAPASPAEYIHRIGRTARIGCHGNSLLVLAPSEAEYVS 507
Query: 488 KLLQKADNDS-CPIHSIPSSLIESLR 512
L N S + + SSL++ R
Sbjct: 508 LLASHKINVSEIKMEKVLSSLMKDDR 533
Score = 120 (47.3 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 57 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPT 110
+V ++TI P L + +D + S TGSGKTL+Y +P+VQ+L + R ALV++PT
Sbjct: 122 SVQKQTI-PVLLQGKDALVRSQTGSGKTLAYGIPLVQSLQGMQSKIQRSDGPYALVLVPT 180
Query: 111 RDLALQ 116
R+LALQ
Sbjct: 181 RELALQ 186
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 194 (73.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 106 (42.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 265 RSDNE 269
R D +
Sbjct: 270 RPDRQ 274
Score = 94 (38.1 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 35/127 (27%), Positives = 53/127 (41%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVLPTRDLALQVN 118
L D+ + TGSGKTLSY LP + Q R + LV+ PTR+LA QV
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQ 184
Query: 119 SARCKYC 125
+YC
Sbjct: 185 QVAAEYC 191
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 194 (73.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 106 (42.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 265 RSDNE 269
R D +
Sbjct: 270 RPDRQ 274
Score = 94 (38.1 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 35/127 (27%), Positives = 53/127 (41%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVLPTRDLALQVN 118
L D+ + TGSGKTLSY LP + Q R + LV+ PTR+LA QV
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQ 184
Query: 119 SARCKYC 125
+YC
Sbjct: 185 QVAAEYC 191
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 194 (73.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 106 (42.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 265 RSDNE 269
R D +
Sbjct: 270 RPDRQ 274
Score = 94 (38.1 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 35/127 (27%), Positives = 53/127 (41%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVLPTRDLALQVN 118
L D+ + TGSGKTLSY LP + Q R + LV+ PTR+LA QV
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQ 184
Query: 119 SARCKYC 125
+YC
Sbjct: 185 QVAAEYC 191
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 194 (73.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 106 (42.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 265 RSDNE 269
R D +
Sbjct: 270 RPDRQ 274
Score = 94 (38.1 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 35/127 (27%), Positives = 53/127 (41%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVLPTRDLALQVN 118
L D+ + TGSGKTLSY LP + Q R + LV+ PTR+LA QV
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQ 184
Query: 119 SARCKYC 125
+YC
Sbjct: 185 QVAAEYC 191
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 194 (73.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 106 (42.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 265 RSDNE 269
R D +
Sbjct: 270 RPDRQ 274
Score = 94 (38.1 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 35/127 (27%), Positives = 53/127 (41%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVLPTRDLALQVN 118
L D+ + TGSGKTLSY LP + Q R + LV+ PTR+LA QV
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQ 184
Query: 119 SARCKYC 125
+YC
Sbjct: 185 QVAAEYC 191
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 182 (69.1 bits), Expect = 8.7e-24, Sum P(3) = 8.7e-24
Identities = 53/202 (26%), Positives = 87/202 (43%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT ++ LA FL G + I E K L+ LL
Sbjct: 311 LMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNH 370
Query: 369 LGEEK-C--IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425
+ +K C I+F + L + G + I G + Q R L+ F+ GK
Sbjct: 371 IMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIH---GDKNQGERDWVLQEFKAGKT 427
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
+++++D RG+DV+ + V+NYD P + Y+HR GRT R+ + G +T +
Sbjct: 428 PIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASK 487
Query: 486 FKKLLQKADNDSCPIHSIPSSL 507
K LL+ D ++P +L
Sbjct: 488 AKDLLKVLDEAK---QTVPQAL 506
Score = 114 (45.2 bits), Expect = 8.7e-24, Sum P(3) = 8.7e-24
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 188 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETD 246
+K L G P+ ++L+ VDI+VATPGRL+D ++ G T C YLV+DE D
Sbjct: 231 LKMTCLFGGASKGPQ--ARDLERGVDIVVATPGRLLDFLD--NGTTNMKKCSYLVLDEAD 286
Query: 247 RLLREAYQAWLPTVLQLTRSDNENRFSDAS 276
R+L ++ + ++ R D + A+
Sbjct: 287 RMLDMGFEPQIKKIIGQIRPDRQTLMFSAT 316
Score = 97 (39.2 bits), Expect = 8.7e-24, Sum P(3) = 8.7e-24
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL----RALVVLPTRDLALQVNSARCKYC 125
RD+ + TGSGKTL++ LP + ++ +A R LV+LPTR+LA QV +C
Sbjct: 167 RDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFC 226
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 202 (76.2 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 346 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 405
+ + E K K L L L + I+F +S T+R+ L EL
Sbjct: 242 ISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCYYSH 298
Query: 406 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 465
Q R+K FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+
Sbjct: 299 AKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 358
Query: 466 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 511
R G LG L+ ++ K+ Q+ + PI P+++ +SL
Sbjct: 359 GRFGHLGLAINLMSWNDRYSLYKIEQELGTEIKPI---PATIDKSL 401
Score = 105 (42.0 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNK-VQA 101
Query: 105 LVVLPTRDLALQVN 118
L+++PTR+LALQ +
Sbjct: 102 LILVPTRELALQTS 115
Score = 83 (34.3 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
+D+++ L V ILV TPGR++D + A + L V+DE D++L ++ + +L
Sbjct: 140 DDIVR-LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQIL 197
Query: 262 QLTRSDNENRFSDASTFLPSAFGS 285
+ N ++TF P A S
Sbjct: 198 EFF-PPNRQALLFSATF-PLAVKS 219
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 202 (76.2 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 346 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 405
+ + E K K L L L + I+F +S T+R+ L EL
Sbjct: 242 ISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCYYSH 298
Query: 406 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 465
Q R+K FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+
Sbjct: 299 AKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 358
Query: 466 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 511
R G LG L+ ++ K+ Q+ + PI P+++ +SL
Sbjct: 359 GRFGHLGLAINLMSWNDRYSLYKIEQELGTEIKPI---PATIDKSL 401
Score = 105 (42.0 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNK-VQA 101
Query: 105 LVVLPTRDLALQVN 118
L+++PTR+LALQ +
Sbjct: 102 LILVPTRELALQTS 115
Score = 83 (34.3 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
+D+++ L V ILV TPGR++D + A + L V+DE D++L ++ + +L
Sbjct: 140 DDIVR-LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQIL 197
Query: 262 QLTRSDNENRFSDASTFLPSAFGS 285
+ N ++TF P A S
Sbjct: 198 EFF-PPNRQALLFSATF-PLAVKS 219
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 187 (70.9 bits), Expect = 9.8e-24, Sum P(3) = 9.8e-24
Identities = 58/196 (29%), Positives = 89/196 (45%)
Query: 299 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER--LESYKLICE-S 355
K+ P R M +AT + K+A L +P + G + + + +++
Sbjct: 330 KEIPTKRQTLMY-TATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPME 388
Query: 356 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 415
K + L + Q G K I+F S T R+C L + G + Q R
Sbjct: 389 KQRRLEQILRSQEPGS-KVIIFCS----TKRMCDQLTRNLTRQFGAAAIHGDKSQPERDN 443
Query: 416 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 475
L FR G+ VLV++D RG+DV+ + VVNYD P ++ Y+HR GRT RAG G+ F
Sbjct: 444 VLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAF 503
Query: 476 TLLHKDEVKRFKKLLQ 491
T + K L++
Sbjct: 504 TFFGDQDSKHASDLIK 519
Score = 107 (42.7 bits), Expect = 9.8e-24, Sum P(3) = 9.8e-24
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262
L++L+ DI+VATPGRL D + R +L + YLV+DE DR+L ++ + +++
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRR-ISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
Score = 100 (40.3 bits), Expect = 9.8e-24, Sum P(3) = 9.8e-24
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---IVQT 93
P L + + G S+ P+Q W + G RD+ + TGSGKTL Y +P +Q
Sbjct: 167 PELLREVLSAGFSAPTPIQAQSWPIAM-QG---RDIVAIAKTGSGKTLGYLIPGFLHLQR 222
Query: 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKY 124
+ N + LV+ PTR+LA Q+ K+
Sbjct: 223 IRNDSRMGPTILVLSPTRELATQIQEEAVKF 253
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 194 (73.4 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 106 (42.4 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 265 RSDNE 269
R D +
Sbjct: 270 RPDRQ 274
Score = 93 (37.8 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 29/77 (37%), Positives = 38/77 (49%)
Query: 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVL 108
+Q W + GL D+ + TGSGKTLSY LP + Q R + LV+
Sbjct: 120 IQAQGWPVALS-GL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLA 174
Query: 109 PTRDLALQVNSARCKYC 125
PTR+LA QV +YC
Sbjct: 175 PTRELAQQVQQVAAEYC 191
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 194 (73.4 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 106 (42.4 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 265 RSDNE 269
R D +
Sbjct: 270 RPDRQ 274
Score = 93 (37.8 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 29/77 (37%), Positives = 38/77 (49%)
Query: 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVL 108
+Q W + GL D+ + TGSGKTLSY LP + Q R + LV+
Sbjct: 120 IQAQGWPVALS-GL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLA 174
Query: 109 PTRDLALQVNSARCKYC 125
PTR+LA QV +YC
Sbjct: 175 PTRELAQQVQQVAAEYC 191
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 202 (76.2 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 57/177 (32%), Positives = 92/177 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATL + + A+ L P+ + + KL E+L++ L+ K L+ LLQ+
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFLLVREDTKAAVLLYLLQN 332
Query: 369 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ +++ +VF ++ L LL G I YS L Q+ R L F K
Sbjct: 333 VVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHI--YSALD-QTARKINLAKFTHNKCS 389
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 390 TLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 446
Score = 103 (41.3 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L R+ + RAL++ PT
Sbjct: 115 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPT 174
Query: 111 RDLALQ 116
R+LALQ
Sbjct: 175 RELALQ 180
Score = 94 (38.1 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
Score = 43 (20.2 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 433 AMTRGMDVEGVNNVVNYDKPAYIKT 457
AM +D++G++ V N + Y+++
Sbjct: 499 AMGASLDLQGLHRVANNAQQQYVRS 523
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 194 (73.4 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 320 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 379
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 380 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 436
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 437 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 496
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 497 TAYTFFTPNNIKQVSDLI 514
Score = 106 (42.4 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+I +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 268 IRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 326
Query: 265 RSDNE 269
R D +
Sbjct: 327 RPDRQ 331
Score = 94 (38.1 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 35/127 (27%), Positives = 53/127 (41%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 123 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 182
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVLPTRDLALQVN 118
L D+ + TGSGKTLSY LP + Q R + LV+ PTR+LA QV
Sbjct: 183 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQ 241
Query: 119 SARCKYC 125
+YC
Sbjct: 242 QVAAEYC 248
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 250 (93.1 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 93/319 (29%), Positives = 152/319 (47%)
Query: 180 IADEISELIKRPKLEA-GICYDPEDVLQEL---QSAVDILVATPGRLMDHIN-ATRG-FT 233
I I+ LI +L A I V QE Q DI+VATPGRL + A G F
Sbjct: 251 IMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEAETGEFL 310
Query: 234 LE--HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS-AFGSLKTIR 290
E L LVVDETDR++ E Y A L +L ++E F + F + +
Sbjct: 311 AEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHEESEKEKLQTLVFSATLTFAKAQDVA 370
Query: 291 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK 350
++ + ++ +++ L ++ +K+ +DL + G + R+
Sbjct: 371 EEEKKKAKELSSQQKIQRLIKLTGLRENKHKV--IDLTRQM----GTAGCLVEARINCGN 424
Query: 351 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410
L+ E +YL L + G + IVF +S+++ RL ++L + I +Q+Q
Sbjct: 425 LL-EKDTSLVYL--LTRYPG--RTIVFVNSIDAARRLYSVLKSVN-IDPMILHAKMIQKQ 478
Query: 411 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 470
R K L+ F E K VL+++D RG+D++G+++V++Y P ++ YIHR+GRTARA
Sbjct: 479 --RLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARASH 536
Query: 471 LGRCFTLLHKDEVKRFKKL 489
G L+ + + KL
Sbjct: 537 RGLTVVLVDPPSRQFYMKL 555
Score = 99 (39.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV---------- 91
A++ MG S +Q AV + +D+ + TGSGKTL++ +P+V
Sbjct: 169 AIEQMGFSEPTEIQSAVLPAAVRD---RQDVLGAAETGSGKTLAFGIPLVARLLESSDDS 225
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQV 117
Q + VR RAL+V PTR+L +Q+
Sbjct: 226 QETESTEVRGPRALIVAPTRELVIQI 251
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 170 (64.9 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 410 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 469
Q R TLK FR G +VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG
Sbjct: 453 QKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAG 512
Query: 470 QLGRCFTLLHKDEVKRFKKLLQKA 493
+ G C + E + K + QKA
Sbjct: 513 RTGICICFYQRKEESQLKFVEQKA 536
Score = 119 (46.9 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P LQ G+S LF +QV + + G +DL + TG+GKT S+A+P+V+ L
Sbjct: 173 ISPNTIKLLQARGVSYLFDIQVKTFN-AVYDG---KDLIGQARTGTGKTFSFAVPLVEKL 228
Query: 95 SN-----RAVRCLRALVVLPTRDLALQV 117
+ R R + LV+ PTR+LA+QV
Sbjct: 229 QSGDQERRRGRPPKVLVLAPTRELAIQV 256
Score = 109 (43.4 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255
G Y+P+ + ++S +D+LV TPGR+ DH+ + L L ++V+DE D++L +
Sbjct: 275 GSSYNPQ--IDAIRSGIDVLVGTPGRIRDHLQNNK-LDLSQLQHVVLDEVDQMLDMGFAE 331
Query: 256 WLPTVLQLT-RSDNENR 271
+ +L + + D E +
Sbjct: 332 QVEEILSASYKKDAEQK 348
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 206 (77.6 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 62/217 (28%), Positives = 104/217 (47%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT ++ LA+ L P+ + G PE + + +C + K + L+ LL +
Sbjct: 726 VLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVE-VCNEEKKFVRLLELLGN 784
Query: 369 L-----GEE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422
L E+ + ++F E+ TLL G + Q R T++ F+
Sbjct: 785 LYSTDENEDARSLIFVDRQEAAD---TLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKA 841
Query: 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482
G VL+++ RG+DV+ + VVNYD P +++ Y+HRAGRT RAG G T L +D+
Sbjct: 842 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 901
Query: 483 VKRFKKLLQKADNDSCP-IHSIPSSLIESLRPVYKSG 518
+R+ + KA S + L++S K+G
Sbjct: 902 -ERYSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAG 937
Score = 111 (44.1 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 32/106 (30%), Positives = 52/106 (49%)
Query: 178 SSIADEISELIKRPKLEAGICYD--P-EDVLQELQSAVDILVATPGRLMDHI--NATRGF 232
+ I + +K L A Y P +D + EL+ +I+V TPGR++D + NA R
Sbjct: 628 TQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVT 687
Query: 233 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
L + Y+V+DE DR+ ++ + +L R D + A TF
Sbjct: 688 NLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSA-TF 732
Score = 85 (35.0 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 30/110 (27%), Positives = 55/110 (50%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P V + C L + LD + +G +SL +Q + I + RD+ +
Sbjct: 537 PKPVQKWSQCGLG-IQTLD-----VIDKLGFASLTSIQA----QAIPAIMSGRDVIGVAK 586
Query: 78 TGSGKTLSYALPIVQTLSN-RAVRCLRA---LVVLPTRDLALQVNSARCK 123
TGSGKT+++ +P+ + + + R + + L++ PTR+LA Q++ CK
Sbjct: 587 TGSGKTMAFLIPMFRHIKDQRPLENMEGPIGLIMTPTRELATQIHKD-CK 635
Score = 40 (19.1 bits), Expect = 2.9e-16, Sum P(3) = 2.9e-16
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 166 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 222
A+ L A G + I D+I+EL KR E +C P + +D+L A GR+
Sbjct: 640 ALNLRAVCAYGGAPIKDQIAEL-KRGA-EIIVC-TPGRM-------IDLLAANAGRV 686
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 257 (95.5 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 98/369 (26%), Positives = 172/369 (46%)
Query: 163 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 222
I P L++ + + A +S +K + G+ + ++ + L+ +I+VATPGRL
Sbjct: 285 ITPTRELALQVTEHLENAAKNLS--VKVVPIVGGMFSEKQE--RRLKEKPEIVVATPGRL 340
Query: 223 MDHINATRGFTLE-H-LCYLVVDETDRLLREAYQAWLPTVLQL---TRSDNENRF----- 272
+ ++A +E H L + V+DE DR++ + L ++L L T NE +
Sbjct: 341 WELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKS 400
Query: 273 SDA---------STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 323
+D TF+ SA +L + R ++RG K V S + + +
Sbjct: 401 NDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRG-SSKSKQSSSGEVNSIEVLSE--RAG 457
Query: 324 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 383
D + LTT T P+ ES+ + CE K K YL +L G+ + IVF +SV
Sbjct: 458 MRDNVAIIDLTT--TSILAPKIEESF-IKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTD 514
Query: 384 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 443
+ LL G + + +Q R K++ FR + +L+++D + RG+D++ V
Sbjct: 515 LRHISGLLKILG---LDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNV 571
Query: 444 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 503
+++Y P + Y+HR GRTARA G L+ +E +F L + +S I +
Sbjct: 572 RTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESVKIFPL 631
Query: 504 PSSLIESLR 512
+S + ++R
Sbjct: 632 DNSYMPAVR 640
Score = 67 (28.6 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L ++ + +Q A + G +D+ + TGSGKTL++ LPI+Q L
Sbjct: 197 LHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG---KDVIGAAETGSGKTLAFGLPILQRL 253
Score = 66 (28.3 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 86 YALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129
YAL + A LRAL++ PTR+LALQV + KN+
Sbjct: 264 YALKGEEAQKYAADGYLRALIITPTRELALQVTE-HLENAAKNL 306
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 189 (71.6 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 54/199 (27%), Positives = 91/199 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 259 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCME 318
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 319 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 375
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 376 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 435
Query: 473 RCFTLLHKDEVKRFKKLLQ 491
+T +K+ ++L++
Sbjct: 436 TAYTFFTPGNLKQARELIK 454
Score = 114 (45.2 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 29/99 (29%), Positives = 52/99 (52%)
Query: 173 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + A +
Sbjct: 175 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLEAGK 232
Query: 231 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 269
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 233 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 270
Score = 83 (34.3 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 36/129 (27%), Positives = 55/129 (42%)
Query: 1 MEEAKKKSMPVLPWMRS-PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
+EE ++K + M P V F C +D AL + + P+Q
Sbjct: 68 VEELRRKKEITIRGMEGCPKPVFAFHQCSFPQY-VMD-----ALMDQNFTEPTPIQC--- 118
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLAL 115
+ L RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA
Sbjct: 119 -QGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ 177
Query: 116 QVNSARCKY 124
QV Y
Sbjct: 178 QVQQVADDY 186
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 191 (72.3 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 251 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHD 310
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 311 VEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIH---GDKSQQE 367
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 368 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 427
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 428 TAYTFFTPNNIKQVNDLI 445
Score = 112 (44.5 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 173 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA +A E S +K + G P+ +++L+ V+I +ATPGRL+D + A +
Sbjct: 167 LAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLEAGK 224
Query: 231 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 269
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 225 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 262
Score = 86 (35.3 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 29/87 (33%), Positives = 40/87 (45%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNR 97
+Q + +Q W + GL D+ + TGSGKTLSY LP + Q R
Sbjct: 97 IQRQNFTEPTAIQAQGWPVALS-GL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLER 152
Query: 98 AVRCLRALVVLPTRDLALQVNSARCKY 124
+ LV+ PTR+LA QV +Y
Sbjct: 153 GDGPI-CLVLAPTRELAQQVQQVAAEY 178
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 191 (72.3 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 259 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHD 318
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 319 VEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIH---GDKSQQE 375
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 376 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 435
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 436 TAYTFFTPNNIKQVNDLI 453
Score = 112 (44.5 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 173 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 230
LA +A E S +K + G P+ +++L+ V+I +ATPGRL+D + A +
Sbjct: 175 LAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLEAGK 232
Query: 231 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 269
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 233 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 270
Score = 86 (35.3 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 29/87 (33%), Positives = 40/87 (45%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNR 97
+Q + +Q W + GL D+ + TGSGKTLSY LP + Q R
Sbjct: 105 IQRQNFTEPTAIQAQGWPVALS-GL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLER 160
Query: 98 AVRCLRALVVLPTRDLALQVNSARCKY 124
+ LV+ PTR+LA QV +Y
Sbjct: 161 GDGPI-CLVLAPTRELAQQVQQVAAEY 186
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 255 (94.8 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 88/305 (28%), Positives = 151/305 (49%)
Query: 207 ELQSAVDILVATPGRLMDHI-NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
E + DI V TPGR++D + N++ F + +L +V DE D+LL ++ +L + +
Sbjct: 214 EFKKRNDIFVCTPGRILDLLLNSSSDF-INYLEIVVFDEADKLLELGFKEECLKILDVCK 272
Query: 266 SDNENRFSDA---STFLPSAFGSLKTIRRCGVERGFK-DKPYPRLVKMVLSATLT----- 316
+ F A S A SLK ++ G DK K +A T
Sbjct: 273 FKKQILFFSATLTSDIKQLANFSLKN--PVFIQSGMSFDKNVDG--KNTYNAYNTCNTYN 328
Query: 317 -QDPNKLAQLDLHHPLFLT-TGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEK 373
D N + ++ FL + + +K+ E L + + I + K + L+ L ++ +
Sbjct: 329 DNDNNNIVVNNIISNSFLKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNH 388
Query: 374 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433
CI+F + TH L LL F L ++ E G Q R +++ F++ ++ L++++
Sbjct: 389 CIIFFKTKRETH-LMYLL--FDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTEL 445
Query: 434 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD--EVKRFKKLL 490
+RG+D++ V V+NY+ P+ + Y+HR GRTAR G+ G TL L K+ EVK+ K L
Sbjct: 446 ASRGIDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQKEKIEVKKIVKGL 505
Query: 491 QKADN 495
+K+ N
Sbjct: 506 KKSKN 510
Score = 90 (36.7 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS---NRAVR---------CLRAL 105
+ ++ I L + + NS TGSGKTL++ LPI++ L N +R +AL
Sbjct: 113 IQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKAL 172
Query: 106 VVLPTRDLALQ 116
++LPTR+L+LQ
Sbjct: 173 ILLPTRELSLQ 183
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 255 (94.8 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 88/305 (28%), Positives = 151/305 (49%)
Query: 207 ELQSAVDILVATPGRLMDHI-NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
E + DI V TPGR++D + N++ F + +L +V DE D+LL ++ +L + +
Sbjct: 214 EFKKRNDIFVCTPGRILDLLLNSSSDF-INYLEIVVFDEADKLLELGFKEECLKILDVCK 272
Query: 266 SDNENRFSDA---STFLPSAFGSLKTIRRCGVERGFK-DKPYPRLVKMVLSATLT----- 316
+ F A S A SLK ++ G DK K +A T
Sbjct: 273 FKKQILFFSATLTSDIKQLANFSLKN--PVFIQSGMSFDKNVDG--KNTYNAYNTCNTYN 328
Query: 317 -QDPNKLAQLDLHHPLFLT-TGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEK 373
D N + ++ FL + + +K+ E L + + I + K + L+ L ++ +
Sbjct: 329 DNDNNNIVVNNIISNSFLKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNH 388
Query: 374 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433
CI+F + TH L LL F L ++ E G Q R +++ F++ ++ L++++
Sbjct: 389 CIIFFKTKRETH-LMYLL--FDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTEL 445
Query: 434 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD--EVKRFKKLL 490
+RG+D++ V V+NY+ P+ + Y+HR GRTAR G+ G TL L K+ EVK+ K L
Sbjct: 446 ASRGIDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQKEKIEVKKIVKGL 505
Query: 491 QKADN 495
+K+ N
Sbjct: 506 KKSKN 510
Score = 90 (36.7 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS---NRAVR---------CLRAL 105
+ ++ I L + + NS TGSGKTL++ LPI++ L N +R +AL
Sbjct: 113 IQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKAL 172
Query: 106 VVLPTRDLALQ 116
++LPTR+L+LQ
Sbjct: 173 ILLPTRELSLQ 183
>FB|FBgn0036754 [details] [associations]
symbol:CG5589 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 KO:K14779 OMA:NVMKQSG
RefSeq:NP_649009.1 ProteinModelPortal:Q9VVK8 SMR:Q9VVK8
STRING:Q9VVK8 PRIDE:Q9VVK8 EnsemblMetazoa:FBtr0075170 GeneID:39979
KEGG:dme:Dmel_CG5589 UCSC:CG5589-RA FlyBase:FBgn0036754
InParanoid:Q9VVK8 OrthoDB:EOG4QBZMN PhylomeDB:Q9VVK8
GenomeRNAi:39979 NextBio:816380 Bgee:Q9VVK8 Uniprot:Q9VVK8
Length = 594
Score = 202 (76.2 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 64/207 (30%), Positives = 99/207 (47%)
Query: 312 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG- 370
SAT T K A L + + +T G + E ++ L S+ L + L G
Sbjct: 307 SATYTVPVAKWALRHLKNLVRITIG-VQNSATETVQQELLFVGSEGGKLVAIRDLVRQGL 365
Query: 371 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 430
+ +VF S E +L L + G I + + Q R +KAFREG I VL+
Sbjct: 366 QPPVLVFVQSKERAKQLFEELLYDG---INVDVIHAERSQHQRDNCVKAFREGSIWVLIC 422
Query: 431 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 490
++ M RG+D +GVN V+NYD P +YIHR GRT RAG+ GR T +++ + +
Sbjct: 423 TELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNLRGIA 482
Query: 491 QKADNDSCPIHSIPSSLIESLRPVYKS 517
N ++P +++ ++ V KS
Sbjct: 483 LIIKNSG---GTVPEYMLQ-MKKVRKS 505
Score = 117 (46.2 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
PRL+ QN+ +S F + + + L R L +PTGSGKTL++ PI+ L
Sbjct: 128 PRLQ---QNL-LSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRA 183
Query: 97 RAVRCLRALVVLPTRDLALQV 117
LRALV+ PTR+LA Q+
Sbjct: 184 HKTTGLRALVLAPTRELAQQI 204
Score = 68 (29.0 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLRE 251
E + DILV+TP R+ + L H+ + V+DE DRL+ E
Sbjct: 235 ECKQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEE 280
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 209 (78.6 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 58/204 (28%), Positives = 105/204 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL---VAL 365
++ SAT + + A+ L P+ ++ G + + +++ K +L +AL
Sbjct: 487 LLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLAL 546
Query: 366 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425
L S G ++F S+ + +L + L FG + G + Q RS+T++ F+EGKI
Sbjct: 547 LLSQGS--VLIFVSTKVAVEQLSSNLTKFG---FQTCTLHGDKNQIERSQTIQTFKEGKI 601
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
+L+++D RG+D+ + NVVNYD I+++ HR GRT RAG G +TL+ ++
Sbjct: 602 NILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHF 661
Query: 486 FKKLLQKADNDSCPIHSIPSSLIE 509
L++ ++ S +P LI+
Sbjct: 662 SVDLIKNLESAS---QFVPPELID 682
Score = 111 (44.1 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 30/101 (29%), Positives = 52/101 (51%)
Query: 192 KLEAGICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 248
KL+ + Y + +EL++ +I+VATPGRL+D I + L + YLV+DE D++
Sbjct: 406 KLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKL-KATKLNRVSYLVLDEADKM 464
Query: 249 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 289
+ + +++ R D + A TF P+ +TI
Sbjct: 465 FDFGFGPQVLSIVNHVRPDRQTLLFSA-TFKPNVEEFARTI 504
Score = 76 (31.8 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 28/93 (30%), Positives = 43/93 (46%)
Query: 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95
D L A+ I + P+Q ++ I L RDL + TGSGKT ++ P + +
Sbjct: 313 DDILLQAIAKQSIETPTPIQ----KQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIM 368
Query: 96 NRAVRCLR----ALVVLPTRDLALQVNSARCKY 124
++ AL + PTR+LA Q+ KY
Sbjct: 369 DQPYLEKGDGPIALFLAPTRELAHQIYLETLKY 401
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 243 (90.6 bits), Expect = 3.0e-23, Sum P(5) = 3.0e-23
Identities = 87/305 (28%), Positives = 144/305 (47%)
Query: 213 DILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 270
+I++ATPGRL + I L L LV+DE DR++ + + A L +L++ N++
Sbjct: 433 EIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDHFAELSQLLEML---NDS 489
Query: 271 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 330
+++ L F + T+ R K + KM +A L K+
Sbjct: 490 QYNPNRQTL--VFSATLTLVHQAPARILHKK---HVKKMDKTAKLDLLMQKIGMRGKPKV 544
Query: 331 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCT 389
+ LT E E L K+ CE+ K LYL L+Q G + +VF +S+ RL
Sbjct: 545 IDLTRNEGTV---ETLTETKIHCETDEKDLYLYYFLMQYPG--RSLVFANSISCIKRLSG 599
Query: 390 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 449
LL + + + Q R + L+ F + VL+++D RG+D+ V +V++Y
Sbjct: 600 LLKVLDIMPLTLH---ACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHY 656
Query: 450 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ--KADNDSCPIHSIPSSL 507
P + YIHR+GRTARA G L+ ++V FKK+ + K D D P+ + S
Sbjct: 657 QVPRTSEIYIHRSGRTARATSEGLSLMLIGPEDVINFKKIYKTLKKDED-IPLFPVQSKY 715
Query: 508 IESLR 512
++ ++
Sbjct: 716 MDMVK 720
Score = 79 (32.9 bits), Expect = 3.0e-23, Sum P(5) = 3.0e-23
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94
AL +G S+ P+Q T+ P + ++ D+ + TGSGKTL++A+P++ ++
Sbjct: 206 ALSFLGFSAPTPIQAL----TLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSV 255
Score = 50 (22.7 bits), Expect = 3.0e-23, Sum P(5) = 3.0e-23
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 5 KKKSMPVL-PWMRSPVDVSLFEDCPLDHLPCLD 36
++K + V+ W + +D +LF D +D L C +
Sbjct: 19 QRKGIKVVGKWKQVTIDPNLFADGQMDDLVCFE 51
Score = 49 (22.3 bits), Expect = 3.0e-23, Sum P(5) = 3.0e-23
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 100 RCLRALVVLPTRDLALQV 117
R L LV+ PTR+LA+QV
Sbjct: 380 RPLLGLVLTPTRELAVQV 397
Score = 41 (19.5 bits), Expect = 3.0e-23, Sum P(5) = 3.0e-23
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
QV+ A+A G++ + VG S + L + P++
Sbjct: 396 QVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEI 434
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 243 (90.6 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 83/304 (27%), Positives = 142/304 (46%)
Query: 213 DILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 270
+I++ATPGRL + + L L LV+DE DR++ + + A L +L++ N++
Sbjct: 439 EIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML---NDS 495
Query: 271 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 330
+++ + L F + T+ R K ++ K L Q K+
Sbjct: 496 QYNPSRQTL--VFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQ---KVGMRGKPKV 550
Query: 331 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCT 389
+ LT E E L K+ CE+ K LYL L+Q G + +VF +S+ RL
Sbjct: 551 IDLTRNEGTV---ETLTETKIHCETDEKDLYLYYFLMQYPG--RSLVFANSISCIKRLSG 605
Query: 390 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 449
LL + + + Q R + L+ F + VL+++D RG+D+ V +V++Y
Sbjct: 606 LLKVLDVMPLTLH---ACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHY 662
Query: 450 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS-CPIHSIPSSLI 508
P + YIHR+GRTARA G L+ ++V FKK+ + D P+ + S +
Sbjct: 663 QVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYM 722
Query: 509 ESLR 512
+ ++
Sbjct: 723 DVVK 726
Score = 79 (32.9 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94
AL +G S+ P+Q T+ P + ++ D+ + TGSGKTL++A+P++ ++
Sbjct: 207 ALSFLGFSAPTPIQAL----TLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSV 256
Score = 50 (22.7 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 100 RCLRALVVLPTRDLALQV 117
R L LV+ PTR+LA+QV
Sbjct: 386 RPLLGLVLTPTRELAIQV 403
Score = 49 (22.3 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 5 KKKSMPVL-PWMRSPVDVSLFEDCPLDHLPCLD 36
++K + ++ W + +D +LF D +D L C +
Sbjct: 19 QRKGIKIVGKWKQVTIDPNLFADGQMDDLVCFE 51
Score = 41 (19.5 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193
QV+ A+A G++ + VG S + L + P++
Sbjct: 402 QVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEI 440
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 198 (74.8 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 56/177 (31%), Positives = 91/177 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LLQ+
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFFLVREDTKTAVLLYLLQN 332
Query: 369 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ +++ +VF ++ L LL G I YS L Q+ R L F K
Sbjct: 333 VVRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHI--YSALD-QTARKINLAKFTHNKCS 389
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 390 TLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 446
Score = 103 (41.3 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L R+ + RAL++ PT
Sbjct: 115 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPT 174
Query: 111 RDLALQ 116
R+LALQ
Sbjct: 175 RELALQ 180
Score = 94 (38.1 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
Score = 37 (18.1 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 415 KTLKAFREGKIQVLVSSDAMTRGMDVE-GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473
+ +A R G LV+ D + +D+ + V +P + AG R G LGR
Sbjct: 427 RVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPHEEPS---SAGAVGRDGVLGR 483
Query: 474 CFTLLHKDEVKRFKKLLQ 491
+ DE + LQ
Sbjct: 484 VPQSVVDDEDSSLQTALQ 501
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 194 (73.4 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 50/201 (24%), Positives = 97/201 (48%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT +LA+ L P+ + G ++ L + K Y+ +
Sbjct: 460 VMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHR 519
Query: 369 LGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ +K ++F L + L G I ++ G + Q R + L+ F++G++++
Sbjct: 520 MEPLDKVLIFVGKKLKADDLSSDLCLQG---IAVQSLHGDREQCDREEALQDFKDGRVRI 576
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
LV++D +RG+DV + +V NYD P ++ Y+HR GRT RAG+ G TL+ +++ +
Sbjct: 577 LVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAA 636
Query: 488 KLLQKADNDSCPIHSIPSSLI 508
+L+ + +P L+
Sbjct: 637 ELITILERSG---QDVPEELV 654
Score = 104 (41.7 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
++ + S VDI++ATPGRL D + L + YLV+DE DR+L ++ + ++
Sbjct: 395 IKVVTSGVDIVIATPGRLND-LQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDI 453
Query: 265 RSDNENRFSDAS 276
R D + + A+
Sbjct: 454 RPDRQTVMTSAT 465
Score = 93 (37.8 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P + + +G P+Q W + G+ DL + TG+GKTL+Y LP +
Sbjct: 287 PGIMENIVRVGFKKPTPIQSQAWPVVLN-GI---DLIGIAQTGTGKTLAYLLPGFIHMDG 342
Query: 97 RAV-RCLR----ALVVLPTRDLALQVNSARC-KYCCK 127
+ + R R LV+ PTR+LALQ+ A C KY K
Sbjct: 343 QPMPRDKRNGPGMLVLTPTRELALQIE-AECNKYSYK 378
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 147 (56.8 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 34/96 (35%), Positives = 46/96 (47%)
Query: 396 ELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 453
EL +K K + G Q R F+ K VL+S+D RG+D V ++ YD P
Sbjct: 369 ELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPG 428
Query: 454 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 489
Y+HR GRTAR G+ G L E+ K+L
Sbjct: 429 EATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKEL 464
Score = 129 (50.5 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 23 LFEDCPLDHLPCLDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
LF C L LD +L L + MG F V + I L RD+ +N+PTG+G
Sbjct: 25 LFASCSFSSLG-LDTKLSDQLKERMG----FEAPTLVQAQAIPVILSGRDVLVNAPTGTG 79
Query: 82 KTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQV 117
KT++Y P++ L + + R ALV++PTR+L LQV
Sbjct: 80 KTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQV 120
Score = 116 (45.9 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 267
L+ + IL+ATPGRL+DH+ T F ++L +++ DE D +L Y + +++L S
Sbjct: 152 LRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGS- 210
Query: 268 NENRFSDASTFLP 280
+N + +P
Sbjct: 211 GQNEQGEEDDIVP 223
Score = 67 (28.6 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 272 FSDASTFLPSAFGSL--KTIRRCGV---ERGFKDKPYPRLVK---MVLSATLTQDPNKLA 323
F +A + L +G + I+ G E+G +D P+ ++ ++LSATL N LA
Sbjct: 186 FDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLA 245
Query: 324 QLDLHHPLFLTTGETRYKLPERLES 348
+L L P+ + T+ + +ES
Sbjct: 246 KLSLDDPVMIGLDNTKLQQNLSIES 270
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 194 (73.4 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 356 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 473 RCFTLLHKDEVKRFKKLL 490
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 99 (39.9 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
+++L+ V+ +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVENCIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 265 RSDNE 269
R D +
Sbjct: 270 RPDRQ 274
Score = 94 (38.1 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
Identities = 35/127 (27%), Positives = 53/127 (41%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVLPTRDLALQVN 118
L D+ + TGSGKTLSY LP + Q R + LV+ PTR+LA QV
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQ 184
Query: 119 SARCKYC 125
+YC
Sbjct: 185 QVAAEYC 191
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 203 (76.5 bits), Expect = 4.4e-23, Sum P(3) = 4.4e-23
Identities = 66/233 (28%), Positives = 112/233 (48%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLIC 353
R D+ P ++ SAT ++ LA+ DL P+ + G ++ +
Sbjct: 282 RKIVDQIRPDRQTLMWSATWPKEVQALAK-DLCKEQPIQVNVGSLTLTACRSIKQEIYLL 340
Query: 354 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 411
E K L +LLQ + ++ IVF + ++ + L G + I G ++Q
Sbjct: 341 EEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIH---GDKKQE 397
Query: 412 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 471
R L F+ GK +++++D +RG+D++ V V+N+D P I+ Y+HR GRT RAG
Sbjct: 398 ERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSH 457
Query: 472 GRCFTLLHKDEVKRFK---KLLQKADNDSCP-IHSIPSSLIESLR--PVYKSG 518
G FT L D+ + K K+L++++ P + I S+ + R P Y SG
Sbjct: 458 GASFTFLTADKYRLAKDLVKILRESEQPVPPQLEKISYSMGNNQRRNPYYSSG 510
Score = 90 (36.7 bits), Expect = 4.4e-23, Sum P(3) = 4.4e-23
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 208 LQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
L+ V IL+A PGRL+D + N T L + YLV+DE D++L ++ + ++ R
Sbjct: 233 LKQGVHILIACPGRLIDLLEQNVTN---LMRVTYLVLDEADKMLDMGFELQIRKIVDQIR 289
Query: 266 SDNE 269
D +
Sbjct: 290 PDRQ 293
Score = 89 (36.4 bits), Expect = 4.4e-23, Sum P(3) = 4.4e-23
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVR 100
+L+N I + P+Q+ W + G +D+ + TGSGKTL++ LP V L+ ++
Sbjct: 127 SLKNNNIVAPTPIQIQGWPIALS-G---KDMIGKAETGSGKTLAFILPAFVHILAQPNLK 182
Query: 101 CLRALVVL---PTRDLALQVNSARCKY 124
+VL PTR+LA Q+ K+
Sbjct: 183 YGDGPIVLVLAPTRELAEQIRQECIKF 209
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 203 (76.5 bits), Expect = 4.4e-23, Sum P(3) = 4.4e-23
Identities = 66/233 (28%), Positives = 112/233 (48%)
Query: 296 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLIC 353
R D+ P ++ SAT ++ LA+ DL P+ + G ++ +
Sbjct: 282 RKIVDQIRPDRQTLMWSATWPKEVQALAK-DLCKEQPIQVNVGSLTLTACRSIKQEIYLL 340
Query: 354 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 411
E K L +LLQ + ++ IVF + ++ + L G + I G ++Q
Sbjct: 341 EEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIH---GDKKQE 397
Query: 412 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 471
R L F+ GK +++++D +RG+D++ V V+N+D P I+ Y+HR GRT RAG
Sbjct: 398 ERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSH 457
Query: 472 GRCFTLLHKDEVKRFK---KLLQKADNDSCP-IHSIPSSLIESLR--PVYKSG 518
G FT L D+ + K K+L++++ P + I S+ + R P Y SG
Sbjct: 458 GASFTFLTADKYRLAKDLVKILRESEQPVPPQLEKISYSMGNNQRRNPYYSSG 510
Score = 90 (36.7 bits), Expect = 4.4e-23, Sum P(3) = 4.4e-23
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 208 LQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265
L+ V IL+A PGRL+D + N T L + YLV+DE D++L ++ + ++ R
Sbjct: 233 LKQGVHILIACPGRLIDLLEQNVTN---LMRVTYLVLDEADKMLDMGFELQIRKIVDQIR 289
Query: 266 SDNE 269
D +
Sbjct: 290 PDRQ 293
Score = 89 (36.4 bits), Expect = 4.4e-23, Sum P(3) = 4.4e-23
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVR 100
+L+N I + P+Q+ W + G +D+ + TGSGKTL++ LP V L+ ++
Sbjct: 127 SLKNNNIVAPTPIQIQGWPIALS-G---KDMIGKAETGSGKTLAFILPAFVHILAQPNLK 182
Query: 101 CLRALVVL---PTRDLALQVNSARCKY 124
+VL PTR+LA Q+ K+
Sbjct: 183 YGDGPIVLVLAPTRELAEQIRQECIKF 209
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 200 (75.5 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 56/177 (31%), Positives = 92/177 (51%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LL++
Sbjct: 275 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFFLVREDAKAAVLLHLLRN 333
Query: 369 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ +++ +VF ++ L LL G I YS L Q+ R L F GK
Sbjct: 334 VVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHI--YSALD-QTARKINLARFTHGKCS 390
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 391 ALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 447
Score = 98 (39.6 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + +P+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKTHSAQTGARALILSPT 175
Query: 111 RDLALQ 116
R+LALQ
Sbjct: 176 RELALQ 181
Score = 94 (38.1 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 209 (78.6 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 61/188 (32%), Positives = 94/188 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 366
M+ SAT T LA++ L PL++ E + LE ++C+S + L L + L
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++K IVF SS S LLN+ + + + + G Q+Q R+ T F K
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEVKR 485
+LV +D RG+D+ V+ +V +D P + YIHR GRTAR Q G+ L E+
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELG- 465
Query: 486 FKKLLQKA 493
F + L+ A
Sbjct: 466 FLRYLKAA 473
Score = 133 (51.9 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 43/135 (31%), Positives = 72/135 (53%)
Query: 147 SLLFISLPQVKDVFAA-IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDP 201
+L F+ +P ++ +++ I P G +V + +A +I EL++ GI
Sbjct: 159 TLAFL-IPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGG 217
Query: 202 EDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 258
D QE L V++LVATPGRL+DH+ T+ F +L LV+DE DR+L ++ +
Sbjct: 218 ADRRQEATKLAKGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMK 276
Query: 259 TVLQLTRSDNENRFS 273
++++ NENR S
Sbjct: 277 QIIKVL--PNENRQS 289
Score = 121 (47.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
ED ++ +P +K A++ MG + + VQ +TI P L RD+ + TGSGKTL
Sbjct: 106 EDVLFENADFSEPTMK-AIKEMGFTKMTKVQA----KTIPPLLAGRDVLGAAKTGSGKTL 160
Query: 85 SYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQV 117
++ +P ++ L + ++ +++ PTR+LALQ+
Sbjct: 161 AFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQI 196
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 209 (78.6 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 61/188 (32%), Positives = 94/188 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 366
M+ SAT T LA++ L PL++ E + LE ++C+S + L L + L
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
+ ++K IVF SS S LLN+ + + + + G Q+Q R+ T F K
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEVKR 485
+LV +D RG+D+ V+ +V +D P + YIHR GRTAR Q G+ L E+
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELG- 465
Query: 486 FKKLLQKA 493
F + L+ A
Sbjct: 466 FLRYLKAA 473
Score = 133 (51.9 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 43/135 (31%), Positives = 72/135 (53%)
Query: 147 SLLFISLPQVKDVFAA-IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDP 201
+L F+ +P ++ +++ I P G +V + +A +I EL++ GI
Sbjct: 159 TLAFL-IPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGG 217
Query: 202 EDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 258
D QE L V++LVATPGRL+DH+ T+ F +L LV+DE DR+L ++ +
Sbjct: 218 ADRRQEATKLAKGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMK 276
Query: 259 TVLQLTRSDNENRFS 273
++++ NENR S
Sbjct: 277 QIIKVL--PNENRQS 289
Score = 121 (47.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
ED ++ +P +K A++ MG + + VQ +TI P L RD+ + TGSGKTL
Sbjct: 106 EDVLFENADFSEPTMK-AIKEMGFTKMTKVQA----KTIPPLLAGRDVLGAAKTGSGKTL 160
Query: 85 SYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQV 117
++ +P ++ L + ++ +++ PTR+LALQ+
Sbjct: 161 AFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQI 196
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 201 (75.8 bits), Expect = 6.4e-23, Sum P(3) = 6.4e-23
Identities = 56/198 (28%), Positives = 99/198 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL-PERLESYKLICESKLKPLYLVALLQ 367
++ SAT T++ L ++ + P+F++ E P+ L+ +I E + K L + ++
Sbjct: 257 LLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIE 316
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 425
+ ++K +VF SS + R T F +LR + + G Q R +T F E K
Sbjct: 317 AHRKKKSLVFVSSCKQA-RFLT--EAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKA 373
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485
VL+++D +RG+D E ++ V+ D PA I YIHR GR+AR G ++ + +
Sbjct: 374 AVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEA 433
Query: 486 FKKLLQKADNDSCPIHSI 503
++ K + S PI +
Sbjct: 434 ---MIGKLEKHSIPIEEL 448
Score = 97 (39.2 bits), Expect = 6.4e-23, Sum P(3) = 6.4e-23
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 196 GICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 253
G+ DV E S ++I+V TPGRL+ H++ + + L LV+DE DR+L +
Sbjct: 180 GLVIGGSDVAFERNRISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGF 239
Query: 254 QAWLPTVLQLTRSDNENR-FSDAST 277
L +++ ++ + FS T
Sbjct: 240 SKQLNSIINNLPAERQTLLFSATQT 264
Score = 90 (36.7 bits), Expect = 6.4e-23, Sum P(3) = 6.4e-23
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC----LRALVVLPTRDL 113
+ ++TI L D+ + TGSGKTL+ +P+++ L RA L AL++ PTR+L
Sbjct: 102 IQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALW-RAKWSPDYGLGALIISPTREL 160
Query: 114 ALQVNS 119
ALQ S
Sbjct: 161 ALQTFS 166
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 175 (66.7 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
Identities = 49/185 (26%), Positives = 92/185 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVALLQ 367
++ SAT + L Q L++P+ + L +R+ + + + + K L L+Q
Sbjct: 196 LLFSATFPEQVTTLTQELLNNPIEIQLQSADASTLVQRVFT---VNKGE-KTAVLAHLIQ 251
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
+ ++F V + H L + I + G + QS RS+ L F+ G I+V
Sbjct: 252 QEQWRQALIF---VNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEV 308
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
L+++D RG+D+E + V+N++ P Y+HR GR+ RAG++G +L+ ++ F
Sbjct: 309 LIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYHHFS 368
Query: 488 KLLQK 492
+ +K
Sbjct: 369 VIEKK 373
Score = 109 (43.4 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
Identities = 37/116 (31%), Positives = 57/116 (49%)
Query: 163 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 222
+ P L+ +A S A + IK + G+ + + + L+ VDILVATPGRL
Sbjct: 91 LVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQ--MLALRGGVDILVATPGRL 148
Query: 223 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278
+D I++ L+ + LV+DE DR+L + L +L LT + A TF
Sbjct: 149 LDLISSN-AIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFSA-TF 202
Score = 95 (38.5 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 65 PGLFE-RDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLRALVVLPTRDLAL 115
P +F RDL + TGSGKT ++ALP++Q L N + LV++PTR+LA
Sbjct: 40 PSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAK 99
Query: 116 QV 117
QV
Sbjct: 100 QV 101
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 204 (76.9 bits), Expect = 8.3e-23, Sum P(3) = 8.3e-23
Identities = 61/218 (27%), Positives = 106/218 (48%)
Query: 297 GFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 349
GFK++ Y P ++LSAT+ D ++ + +P+ + + L + Y
Sbjct: 179 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 238
Query: 350 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 409
+ E + K L L S+ + ++F ++ L T L + + + YS L +
Sbjct: 239 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN-DKFTVSAI-YSDLPQ 296
Query: 410 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 469
Q R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R G
Sbjct: 297 QE-RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 355
Query: 470 QLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 507
+ G + ++V ++L +K S I +PS +
Sbjct: 356 RKGVAINFVTNEDVGAMREL-EKFY--STQIEELPSDI 390
Score = 92 (37.4 bits), Expect = 8.3e-23, Sum P(3) = 8.3e-23
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 105
Query: 117 V 117
+
Sbjct: 106 I 106
Score = 74 (31.1 bits), Expect = 8.3e-23, Sum P(3) = 8.3e-23
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
ED + L+ A I+V TPGR+ D+I R F + + ++DE D +L ++ + +
Sbjct: 132 EDA-EGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 262 QL 263
L
Sbjct: 189 TL 190
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 204 (76.9 bits), Expect = 8.3e-23, Sum P(3) = 8.3e-23
Identities = 61/218 (27%), Positives = 106/218 (48%)
Query: 297 GFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 349
GFK++ Y P ++LSAT+ D ++ + +P+ + + L + Y
Sbjct: 179 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 238
Query: 350 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 409
+ E + K L L S+ + ++F ++ L T L + + + YS L +
Sbjct: 239 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN-DKFTVSAI-YSDLPQ 296
Query: 410 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 469
Q R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R G
Sbjct: 297 QE-RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 355
Query: 470 QLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 507
+ G + ++V ++L +K S I +PS +
Sbjct: 356 RKGVAINFVTNEDVGAMREL-EKFY--STQIEELPSDI 390
Score = 92 (37.4 bits), Expect = 8.3e-23, Sum P(3) = 8.3e-23
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 105
Query: 117 V 117
+
Sbjct: 106 I 106
Score = 74 (31.1 bits), Expect = 8.3e-23, Sum P(3) = 8.3e-23
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
ED + L+ A I+V TPGR+ D+I R F + + ++DE D +L ++ + +
Sbjct: 132 EDA-EGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 262 QL 263
L
Sbjct: 189 TL 190
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 177 (67.4 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 55/204 (26%), Positives = 96/204 (47%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 367
+++SAT+ +LA LH+P+ + TGE + + E +K K L+ + +
Sbjct: 382 ILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILNDK 441
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
L + +VF L + L+ + +S + Q+ R LK EG +V
Sbjct: 442 KLFKPPVLVFVDCKLGADLLSEAVQKITGLK-SVSIHSE-KSQTERKNILKGLLEGDYEV 499
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
+VS+ + RG+D+ V VVN+D P+ + Y+H+ GR R GQ G T ++ + + F
Sbjct: 500 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 559
Query: 488 KLLQKADNDSCPIHSI-PSSLIES 510
+ ++ P SI P L+ S
Sbjct: 560 DIAKRVK----PTGSILPPQLLNS 579
Score = 110 (43.8 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108
+S + V + + I GL RD+ ++ TGSGKT ++ LP++ T + + AL++
Sbjct: 221 TSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI-TRALCESKTPSALILT 279
Query: 109 PTRDLALQV-NSAR 121
PTR+LA+Q+ N A+
Sbjct: 280 PTRELAIQIENQAK 293
Score = 99 (39.9 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 173 LAVGQSSIADEISELIKRPK---LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 229
LA+ + A E+ + R K L G+ P+ L L+ V +++ATPGRL+D I +
Sbjct: 284 LAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQ--LYRLRQHVKVIIATPGRLLDIIKQS 341
Query: 230 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 286
L + +VVDE D +L+ +Q + +L+ +D++ A+ +P++ L
Sbjct: 342 -SVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSAT--IPTSIEQL 395
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 188 (71.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 58/191 (30%), Positives = 88/191 (46%)
Query: 304 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL-PERLESYKLICESKLKPLYL 362
P ++ SAT T+ + LA+L L P ++ E P +L+ + ++ K L
Sbjct: 224 PERQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDTL 283
Query: 363 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422
+ ++S + K IVF SS + + H + I + G Q+Q R F +
Sbjct: 284 WSFIRSNLKSKTIVFMSSGKQVRFVYESFRHM-QPGIPLLHLHGRQKQGGRLDITTRFSQ 342
Query: 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482
+ VL S+D RG+D V+ V+ D P TYIHR GRTAR + GR L E
Sbjct: 343 AQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSE 402
Query: 483 VK-RFKKLLQK 492
K ++L QK
Sbjct: 403 EKGMLRRLEQK 413
Score = 101 (40.6 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
QE ++ILV TPGR++ H++ T F +L LV+DE DR++ +Q + ++
Sbjct: 164 QERLGRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAII 219
Score = 100 (40.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRAL 105
SS F + I L RD+ + TGSGKTL++ +PI++ L + L AL
Sbjct: 65 SSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLYRKQWSDHDGLGAL 124
Query: 106 VVLPTRDLALQV 117
++ PTR+LA+Q+
Sbjct: 125 IISPTRELAIQI 136
Score = 53 (23.7 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 36/144 (25%), Positives = 57/144 (39%)
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIF 130
DL I+ PT SG T S+ + S L+ VL A +N++
Sbjct: 52 DLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLY 111
Query: 131 GLI-ADHS-IAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 188
+DH + + + L I Q+ +V I S GL +G S+ +E L
Sbjct: 112 RKQWSDHDGLGALIISPTRELAI---QIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERL- 167
Query: 189 KRPKLEAGICYDPEDVLQEL-QSA 211
++ +C P +LQ L Q+A
Sbjct: 168 --GRMNILVC-TPGRMLQHLDQTA 188
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 173 (66.0 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 54/204 (26%), Positives = 94/204 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 367
++ SAT + +A+ +++P+ + T K Y+L + S+++ L L+ L
Sbjct: 179 LLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEH 238
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
E +VF ++ T ++ L G + G Q R +TL F V
Sbjct: 239 K--PESAVVFCNTKRETQKVADELEGLG---FSVLALHGDLEQRDRDETLLQFANKSACV 293
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
LV++D RG+D++ ++ V NY + +IHR GRT RAG G +T + + +
Sbjct: 294 LVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIA 353
Query: 488 KLLQKADNDSCPIHSIPS-SLIES 510
L + D + S+PS SL+ S
Sbjct: 354 LLEEYLDREITS-ESLPSLSLLGS 376
Score = 112 (44.5 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 188 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 247
+K L G+ P+ + L+ I+V TPGR++DH++ R L +L LV+DE DR
Sbjct: 99 VKVLTLCGGVPMGPQ--IGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADR 155
Query: 248 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 286
+L +Q L +++ + + + A TF P S+
Sbjct: 156 MLEMGFQPQLDAIIEQSPRERQTLLFSA-TF-PEQIQSI 192
Score = 93 (37.8 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L +MG + + P+Q +++ L D+ TGSGKT ++ L ++ L + R +
Sbjct: 16 LSSMGYNEMTPIQA----QSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR-I 70
Query: 103 RALVVLPTRDLALQV 117
+ LV+ PTR+LA QV
Sbjct: 71 QTLVLCPTRELADQV 85
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 173 (66.0 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 54/204 (26%), Positives = 94/204 (46%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 367
++ SAT + +A+ +++P+ + T K Y+L + S+++ L L+ L
Sbjct: 179 LLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEH 238
Query: 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427
E +VF ++ T ++ L G + G Q R +TL F V
Sbjct: 239 K--PESAVVFCNTKRETQKVADELEGLG---FSVLALHGDLEQRDRDETLLQFANKSACV 293
Query: 428 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487
LV++D RG+D++ ++ V NY + +IHR GRT RAG G +T + + +
Sbjct: 294 LVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIA 353
Query: 488 KLLQKADNDSCPIHSIPS-SLIES 510
L + D + S+PS SL+ S
Sbjct: 354 LLEEYLDREITS-ESLPSLSLLGS 376
Score = 112 (44.5 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 188 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 247
+K L G+ P+ + L+ I+V TPGR++DH++ R L +L LV+DE DR
Sbjct: 99 VKVLTLCGGVPMGPQ--IGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADR 155
Query: 248 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 286
+L +Q L +++ + + + A TF P S+
Sbjct: 156 MLEMGFQPQLDAIIEQSPRERQTLLFSA-TF-PEQIQSI 192
Score = 93 (37.8 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L +MG + + P+Q +++ L D+ TGSGKT ++ L ++ L + R +
Sbjct: 16 LSSMGYNEMTPIQA----QSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR-I 70
Query: 103 RALVVLPTRDLALQV 117
+ LV+ PTR+LA QV
Sbjct: 71 QTLVLCPTRELADQV 85
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 191 (72.3 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 51/179 (28%), Positives = 90/179 (50%)
Query: 312 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLG 370
SAT + + K + ++ + GE R ++ C ++ K + + LL++
Sbjct: 314 SATFSHEVEKWCKENIDEIGMVCVGE-RNSSNTSVKQKLTYCGTEDGKKIAIRNLLRTSF 372
Query: 371 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 430
+ +VF S + +L LL+ + +K+ + + R +T++ FR G+I VLV
Sbjct: 373 KPPALVFVQSKDRAVQLVKLLSAI-DSNLKVDSINSGKSDKERDETMERFRRGEIWVLVC 431
Query: 431 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 489
++ + RG+D+ V V+NYD P I +YIHR GRT RAG+ G T ++K K +
Sbjct: 432 TELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADMKYIKSI 490
Score = 115 (45.5 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 41/130 (31%), Positives = 64/130 (49%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQT 93
+ P L L I P+Q+ ++I P + ER ++ ++PTGSGKTL++ALP++
Sbjct: 133 MSPSLLNRLSENSIRQPSPIQM----QSI-PFMTERRNVLASAPTGSGKTLAFALPVIDE 187
Query: 94 LSNRAVRC---------LRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 144
+ R L A+V+ PTR+LA Q + KYC A+ S E +Q
Sbjct: 188 ILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISA-ANFSGEETDIQ 246
Query: 145 FDSLLFISLP 154
+L +S P
Sbjct: 247 HADIL-VSTP 255
Score = 75 (31.5 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 248
++Q A DILV+TP R++ H++ +L +LVVDE+DRL
Sbjct: 244 DIQHA-DILVSTPNRIVFHLDKIDTSSLR---WLVVDESDRL 281
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 148 (57.2 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 304 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 361
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 362 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPTCVLNGELPLRSRCHIISQF 304
Query: 421 REGKIQVLVSSDAMTRGMDVEG 442
+G ++++DA G V+G
Sbjct: 305 NQGFYDCVIATDAEVLGAPVKG 326
Score = 135 (52.6 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 45/136 (33%), Positives = 74/136 (54%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVNSA---RCKYCCKNIFGLIADHSIAE 140
++Q L +R + +R LV++PT++LA Q S YC +++ +A+ S AE
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVSAAE 122
Query: 141 MCVQFDSLLFISLPQV 156
V ++L + P V
Sbjct: 123 DSVSQRAVL-MEKPDV 137
Score = 101 (40.6 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 434 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 478
+ RG+D V+ V+N+D P + YIHRAGRTARA G T +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFV 389
Score = 74 (31.1 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 24/91 (26%), Positives = 40/91 (43%)
Query: 173 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE--LQSAVDILVATPGRLMDHINATR 230
LA S+ +++ R A + + V Q L D++V TP R++ H+
Sbjct: 94 LARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDS 153
Query: 231 GFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261
+ L LVVDE D L ++ L ++L
Sbjct: 154 LKLRDSLELLVVDEADLLFSFGFEEELKSLL 184
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 192 (72.6 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 60/205 (29%), Positives = 99/205 (48%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + D AQ + P ++ + + ++ + K LVALL+
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPEN-SINQAVQETLYLVNKGSKTQALVALLKQ 255
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
+ +VF + E+ L LN G I G + QS R L F+ G QVL
Sbjct: 256 HQWPQVLVFIGAKENADSLTKKLNKAG---IVATVLHGDKSQSEREAALAEFKNGTTQVL 312
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-H--KDEVKR 485
+++D + RG+ +E + V+N++ P + +TY+HR GRTARAGQ G +L+ H D +
Sbjct: 313 IATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNA 372
Query: 486 FKKLLQK---ADN-DSCPIHSIPSS 506
+ L Q+ N + P+ PS+
Sbjct: 373 TRTLTQRELPVQNLEGFPVTDQPST 397
Score = 105 (42.0 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 60 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
Q + P + +D+ + TGSGKTL+Y LP+++ L + +ALV++PTR+LA+QV+
Sbjct: 49 QTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLERLKTSPEQ--QALVLVPTRELAMQVS 106
Score = 75 (31.5 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 213 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
+ILVAT GRL D + G L + LV+DE DRLL + W P V L
Sbjct: 141 NILVATTGRLFDLTQS--GLRLNRVTTLVLDEADRLLDMGF--W-PQVQAL 186
Score = 40 (19.1 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---EAGICYDPEDVLQELQSA 211
QV +V + A+GL+ G ++ + L + P + G +D L
Sbjct: 104 QVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFDLTQSGLRLNRV 163
Query: 212 VDILVATPGRLMD 224
+++ RL+D
Sbjct: 164 TTLVLDEADRLLD 176
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 192 (72.6 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 60/205 (29%), Positives = 99/205 (48%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT + D AQ + P ++ + + ++ + K LVALL+
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPEN-SINQAVQETLYLVNKGSKTQALVALLKQ 255
Query: 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428
+ +VF + E+ L LN G I G + QS R L F+ G QVL
Sbjct: 256 HQWPQVLVFIGAKENADSLTKKLNKAG---IVATVLHGDKSQSEREAALAEFKNGTTQVL 312
Query: 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-H--KDEVKR 485
+++D + RG+ +E + V+N++ P + +TY+HR GRTARAGQ G +L+ H D +
Sbjct: 313 IATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNA 372
Query: 486 FKKLLQK---ADN-DSCPIHSIPSS 506
+ L Q+ N + P+ PS+
Sbjct: 373 TRTLTQRELPVQNLEGFPVTDQPST 397
Score = 105 (42.0 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 60 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118
Q + P + +D+ + TGSGKTL+Y LP+++ L + +ALV++PTR+LA+QV+
Sbjct: 49 QTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLERLKTSPEQ--QALVLVPTRELAMQVS 106
Score = 75 (31.5 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 213 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263
+ILVAT GRL D + G L + LV+DE DRLL + W P V L
Sbjct: 141 NILVATTGRLFDLTQS--GLRLNRVTTLVLDEADRLLDMGF--W-PQVQAL 186
Score = 40 (19.1 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 155 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL---EAGICYDPEDVLQELQSA 211
QV +V + A+GL+ G ++ + L + P + G +D L
Sbjct: 104 QVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFDLTQSGLRLNRV 163
Query: 212 VDILVATPGRLMD 224
+++ RL+D
Sbjct: 164 TTLVLDEADRLLD 176
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 197 (74.4 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 60/195 (30%), Positives = 92/195 (47%)
Query: 304 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYL 362
PR ++ +AT ++ K+A L +P+ + G + + Y + K L
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRL 670
Query: 363 VALLQSLGE-EKCIVFTSSVESTHRLCTLL-----NHFGELRIKIKEYSGLQRQSVRSKT 416
+L+S K I+F S T RLC L HFG + I G + Q R
Sbjct: 671 EQILRSQERGSKVIIFCS----TKRLCDHLARSVGRHFGAVVIH-----GDKTQGERDWV 721
Query: 417 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 476
L FR GK VL+++D RG+D++ + V+NYD P ++ Y+HR GRT RAG G FT
Sbjct: 722 LNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFT 781
Query: 477 LLHKDEVKRFKKLLQ 491
+ + K L++
Sbjct: 782 FFTEQDWKYAPDLIK 796
Score = 102 (41.0 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 28/93 (30%), Positives = 44/93 (47%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---IV 91
L P + L + G S P+Q W L RD+ + TGSGKTL Y +P ++
Sbjct: 442 LPPEILRELLSAGFPSPTPIQAQTWPIA----LQSRDIVAIAKTGSGKTLGYLIPAFILL 497
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124
+ N + L++ PTR+LA Q+ ++
Sbjct: 498 RHCRNDSRNGPTVLILAPTRELATQIQDEALRF 530
Score = 92 (37.4 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 254
L+EL+ DI+VATPGRL D I + + + LV+DE DR+L ++
Sbjct: 551 LKELERGADIVVATPGRLND-ILEMKMIDFQQVSLLVLDEADRMLDMGFE 599
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 203 (76.5 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 57/199 (28%), Positives = 100/199 (50%)
Query: 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 368
++ SAT+ + A+ L P+ + G + ++ + + E + K +YL+ LQ
Sbjct: 223 LLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKE-EAKMVYLLECLQK 281
Query: 369 LGEEKCIVFT---SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425
++F + V++ H L ++ G + Q R+K ++AF+EGK
Sbjct: 282 T-PPPVLIFAEKKADVDAIHEYLLLKG------VEAVAIHGGKDQEERTKAIEAFKEGKK 334
Query: 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK--DE- 482
VLV++D ++G+D + +VVNYD P I+ Y+HR GRT R+G+ G T ++K DE
Sbjct: 335 DVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDES 394
Query: 483 -VKRFKKLLQKADNDSCPI 500
+ K LL +A P+
Sbjct: 395 VLMDLKALLVEAKQKVPPV 413
Score = 91 (37.1 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 21/86 (24%), Positives = 44/86 (51%)
Query: 191 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 250
P++ +C V ++++ + +ATPGRLMD +N + +L+ YL +DE DR++
Sbjct: 147 PQMRCALCIGGMSVKEQMEV---VKLATPGRLMDLLNK-KMVSLDICRYLALDEADRMID 202
Query: 251 EAYQAWLPTVLQLTRSDNENRFSDAS 276
++ + T+ + + A+
Sbjct: 203 MGFEEDIRTIFSYFKGQRQTLLFSAT 228
Score = 79 (32.9 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 31/106 (29%), Positives = 49/106 (46%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-- 100
L+ GI P+Q+ + I L RD+ + TGSGKTL + LPI+ + R
Sbjct: 52 LKKKGIVHPTPIQI----QGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEKRLP 107
Query: 101 -CLR----ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEM 141
C R L++ P+ ++A + +Y CK L+ D +M
Sbjct: 108 FCKREGPYGLIICPSVNVAKHTHHGIIEYYCK----LLEDEGAPQM 149
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 203 (76.5 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 55/193 (28%), Positives = 95/193 (49%)
Query: 309 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 366
++ SAT LA+ ++ P LF+ G+ + +E + + K L+ +L
Sbjct: 476 LMFSATFPSSIQSLAR-EILKPDYLFVVVGQVGGACSD-VEQMVIEVDEFGKKDKLMEIL 533
Query: 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426
Q +G E+ +VF + + + T L + ++ G + Q R L+ FR G+
Sbjct: 534 QEIGSERTMVFVKTKKKADFIATFLC---QEKVPSTSIHGDREQKERETALRDFRTGQCP 590
Query: 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK--DEVK 484
V+V++ RG+D+E V+ V+N+D P I Y+HR GRT R G GR + K D+ +
Sbjct: 591 VIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQ 650
Query: 485 RFKKLLQKADNDS 497
R + L K +D+
Sbjct: 651 RIARSLVKVLSDA 663
Score = 100 (40.3 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 264
L+++ +IL ATPGRL+D I + L L YLV+DE DR+L ++ + +L+ +
Sbjct: 407 LKQISEGCNILCATPGRLLDVIRKEK-IGLTKLRYLVLDEADRMLDMGFREDIENLLKSS 465
Query: 265 R--SDNENRFSDASTFLPSAFGSL 286
S E + S PS+ SL
Sbjct: 466 GMPSKEERQTLMFSATFPSSIQSL 489
Score = 80 (33.2 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 70 RDLCINSPTGSGKTLSYALPI-----VQTLSNRAVRCLR---ALVVLPTRDLALQV 117
RDL + TGSGKT ++ LPI V+ + + A + L+ A++V PTR+L Q+
Sbjct: 324 RDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQI 379
WARNING: HSPs involving 605 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 520 520 0.00089 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 855
No. of states in DFA: 616 (65 KB)
Total size of DFA: 286 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.48u 0.11s 42.59t Elapsed: 00:00:02
Total cpu time: 42.53u 0.12s 42.65t Elapsed: 00:00:02
Start: Tue May 21 13:06:56 2013 End: Tue May 21 13:06:58 2013
WARNINGS ISSUED: 2