Query 010028
Match_columns 520
No_of_seqs 164 out of 1812
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 20:11:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.1E-60 2.3E-65 443.6 30.9 380 21-514 60-439 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 1.6E-58 3.4E-63 457.6 32.6 372 35-514 98-478 (519)
3 KOG0328 Predicted ATP-dependen 100.0 5.2E-56 1.1E-60 395.5 25.8 371 20-507 25-396 (400)
4 PTZ00110 helicase; Provisional 100.0 4.1E-55 8.8E-60 456.7 37.0 382 14-510 122-510 (545)
5 PRK04837 ATP-dependent RNA hel 100.0 1.2E-54 2.6E-59 444.1 34.8 378 17-506 3-386 (423)
6 COG0513 SrmB Superfamily II DN 100.0 3E-54 6.5E-59 445.8 34.2 363 22-496 29-396 (513)
7 PLN00206 DEAD-box ATP-dependen 100.0 7.7E-54 1.7E-58 446.0 35.6 377 17-509 116-500 (518)
8 PRK04537 ATP-dependent RNA hel 100.0 1.3E-53 2.7E-58 446.8 36.9 385 17-512 4-394 (572)
9 KOG0350 DEAD-box ATP-dependent 100.0 5.1E-54 1.1E-58 410.5 30.6 438 12-513 111-573 (620)
10 KOG0338 ATP-dependent RNA heli 100.0 8.8E-54 1.9E-58 409.3 28.5 382 22-515 181-569 (691)
11 PRK11776 ATP-dependent RNA hel 100.0 4.8E-53 1.1E-57 436.9 34.9 359 22-495 4-363 (460)
12 KOG0345 ATP-dependent RNA heli 100.0 3.8E-53 8.2E-58 402.0 30.2 362 23-491 5-373 (567)
13 PRK10590 ATP-dependent RNA hel 100.0 8E-53 1.7E-57 433.3 34.7 360 23-495 2-366 (456)
14 PRK11192 ATP-dependent RNA hel 100.0 2.7E-52 5.8E-57 428.8 35.3 359 23-494 2-365 (434)
15 PRK11634 ATP-dependent RNA hel 100.0 5.3E-52 1.1E-56 436.8 37.1 368 22-504 6-374 (629)
16 PRK01297 ATP-dependent RNA hel 100.0 9.6E-52 2.1E-56 428.3 38.4 365 22-496 87-457 (475)
17 KOG0343 RNA Helicase [RNA proc 100.0 3.6E-52 7.9E-57 401.7 29.3 358 20-487 67-428 (758)
18 KOG0340 ATP-dependent RNA heli 100.0 3.6E-52 7.9E-57 382.3 27.4 373 20-505 5-384 (442)
19 KOG0342 ATP-dependent RNA heli 100.0 6.1E-52 1.3E-56 396.5 28.2 366 14-490 74-446 (543)
20 KOG0333 U5 snRNP-like RNA heli 100.0 1.8E-51 4E-56 394.9 28.4 408 16-519 239-660 (673)
21 PTZ00424 helicase 45; Provisio 100.0 2.3E-50 5E-55 411.5 35.1 361 21-495 27-388 (401)
22 KOG0326 ATP-dependent RNA heli 100.0 1E-51 2.2E-56 373.9 19.2 370 19-506 82-451 (459)
23 KOG0336 ATP-dependent RNA heli 100.0 2.1E-51 4.6E-56 383.2 21.2 378 17-509 214-597 (629)
24 KOG0346 RNA helicase [RNA proc 100.0 2E-50 4.4E-55 380.1 24.5 386 22-516 19-452 (569)
25 KOG0348 ATP-dependent RNA heli 100.0 1.4E-49 3.1E-54 382.5 30.1 375 21-490 135-563 (708)
26 KOG0335 ATP-dependent RNA heli 100.0 6E-50 1.3E-54 389.6 26.0 390 16-517 68-477 (482)
27 KOG0347 RNA helicase [RNA proc 100.0 2.2E-49 4.8E-54 382.4 20.2 392 15-514 174-604 (731)
28 KOG0332 ATP-dependent RNA heli 100.0 1.9E-47 4E-52 353.3 23.2 366 15-494 82-457 (477)
29 TIGR03817 DECH_helic helicase/ 100.0 1.1E-46 2.4E-51 404.1 32.3 374 14-494 4-401 (742)
30 KOG0339 ATP-dependent RNA heli 100.0 8.1E-47 1.7E-51 361.2 26.1 377 17-509 218-600 (731)
31 KOG0341 DEAD-box protein abstr 100.0 1.6E-46 3.4E-51 348.3 20.4 358 15-482 163-529 (610)
32 KOG0327 Translation initiation 100.0 1E-45 2.2E-50 345.0 22.9 369 21-507 25-393 (397)
33 KOG0334 RNA helicase [RNA proc 100.0 4.3E-45 9.4E-50 379.5 24.7 385 16-516 359-751 (997)
34 TIGR00614 recQ_fam ATP-depende 100.0 2.6E-44 5.5E-49 371.3 28.6 335 45-494 6-346 (470)
35 KOG0344 ATP-dependent RNA heli 100.0 5.8E-44 1.3E-48 349.8 25.5 386 17-508 127-519 (593)
36 PLN03137 ATP-dependent DNA hel 100.0 3.7E-43 8E-48 374.2 33.5 345 35-492 444-798 (1195)
37 PRK11057 ATP-dependent DNA hel 100.0 3.7E-43 8.1E-48 371.8 32.8 341 35-492 9-354 (607)
38 KOG4284 DEAD box protein [Tran 100.0 3.8E-44 8.1E-49 351.6 21.7 375 18-507 21-410 (980)
39 KOG0337 ATP-dependent RNA heli 100.0 1.6E-43 3.5E-48 332.0 18.4 362 21-495 20-382 (529)
40 PRK13767 ATP-dependent helicas 100.0 1.1E-41 2.5E-46 372.6 35.6 372 35-495 18-413 (876)
41 TIGR01389 recQ ATP-dependent D 100.0 4.3E-42 9.3E-47 365.0 30.4 335 41-492 3-342 (591)
42 PRK02362 ski2-like helicase; P 100.0 1.6E-41 3.5E-46 368.3 31.3 376 23-519 2-437 (737)
43 PRK00254 ski2-like helicase; P 100.0 2.2E-40 4.7E-45 358.6 30.6 376 23-518 2-426 (720)
44 COG1201 Lhr Lhr-like helicases 100.0 9.4E-40 2E-44 341.8 30.1 371 33-509 6-391 (814)
45 TIGR00580 mfd transcription-re 100.0 1.7E-38 3.6E-43 343.9 33.9 338 35-491 436-786 (926)
46 PRK10917 ATP-dependent DNA hel 100.0 2.8E-38 6E-43 338.1 33.7 337 38-491 250-603 (681)
47 TIGR00643 recG ATP-dependent D 100.0 2.7E-38 5.9E-43 336.2 32.9 328 37-478 223-563 (630)
48 PRK01172 ski2-like helicase; P 100.0 1.8E-38 3.8E-43 342.4 30.8 348 24-490 3-388 (674)
49 COG0514 RecQ Superfamily II DN 100.0 3.8E-38 8.3E-43 318.5 29.1 340 40-494 6-350 (590)
50 PRK10689 transcription-repair 100.0 6.1E-37 1.3E-41 338.7 34.5 339 36-491 587-935 (1147)
51 PRK09751 putative ATP-dependen 100.0 2.8E-37 6.1E-42 342.7 30.5 318 74-475 1-379 (1490)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.8E-36 4E-41 318.9 28.9 345 46-478 12-388 (844)
53 COG1111 MPH1 ERCC4-like helica 100.0 3.4E-35 7.4E-40 284.0 31.6 323 48-481 13-481 (542)
54 KOG0329 ATP-dependent RNA heli 100.0 5.6E-36 1.2E-40 263.7 16.1 336 20-506 40-378 (387)
55 COG1202 Superfamily II helicas 100.0 1.7E-35 3.8E-40 287.8 20.0 357 14-480 181-552 (830)
56 PHA02558 uvsW UvsW helicase; P 100.0 4.9E-34 1.1E-38 296.3 28.1 303 48-473 112-444 (501)
57 PHA02653 RNA helicase NPH-II; 100.0 1.5E-34 3.3E-39 303.0 24.0 326 50-489 160-522 (675)
58 COG1205 Distinct helicase fami 100.0 4.1E-34 8.9E-39 307.9 27.6 350 36-484 56-425 (851)
59 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.7E-34 8.1E-39 307.1 26.0 303 65-485 13-340 (819)
60 COG1204 Superfamily II helicas 100.0 3E-34 6.4E-39 304.8 24.3 345 35-486 16-414 (766)
61 TIGR01587 cas3_core CRISPR-ass 100.0 7.3E-34 1.6E-38 285.3 24.0 314 71-480 1-335 (358)
62 PRK11664 ATP-dependent RNA hel 100.0 8.9E-34 1.9E-38 305.0 23.0 305 62-484 13-342 (812)
63 KOG0952 DNA/RNA helicase MER3/ 100.0 7.9E-33 1.7E-37 285.9 23.4 374 43-520 103-527 (1230)
64 PRK09401 reverse gyrase; Revie 100.0 2.9E-32 6.4E-37 302.2 28.4 326 46-468 77-431 (1176)
65 TIGR00603 rad25 DNA repair hel 100.0 2.3E-32 5.1E-37 285.2 25.5 312 49-484 254-610 (732)
66 PRK14701 reverse gyrase; Provi 100.0 1.4E-32 3E-37 310.9 24.7 362 38-492 67-467 (1638)
67 TIGR01054 rgy reverse gyrase. 100.0 2.9E-31 6.3E-36 294.8 31.2 317 38-452 66-408 (1171)
68 KOG0354 DEAD-box like helicase 100.0 1.1E-31 2.3E-36 274.7 25.2 327 48-483 60-531 (746)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 4.4E-31 9.5E-36 262.4 27.8 315 54-466 1-357 (357)
70 PRK13766 Hef nuclease; Provisi 100.0 6.5E-31 1.4E-35 288.9 31.6 322 48-481 13-479 (773)
71 PRK12898 secA preprotein trans 100.0 3.5E-31 7.6E-36 273.4 25.7 354 46-482 100-587 (656)
72 KOG0349 Putative DEAD-box RNA 100.0 1.2E-31 2.7E-36 252.6 19.7 304 101-495 286-629 (725)
73 PRK09200 preprotein translocas 100.0 1.1E-30 2.4E-35 275.3 26.9 356 46-482 75-542 (790)
74 TIGR03714 secA2 accessory Sec 100.0 1.3E-30 2.8E-35 272.2 26.9 370 50-493 68-556 (762)
75 KOG0351 ATP-dependent DNA heli 100.0 5.7E-31 1.2E-35 281.5 24.2 340 39-493 252-604 (941)
76 COG1200 RecG RecG-like helicas 100.0 4.9E-30 1.1E-34 258.8 26.7 350 39-509 252-618 (677)
77 TIGR00963 secA preprotein tran 100.0 4.9E-29 1.1E-33 258.7 30.0 355 46-482 53-518 (745)
78 KOG0352 ATP-dependent DNA heli 100.0 6.4E-30 1.4E-34 240.8 20.7 344 38-491 6-372 (641)
79 PRK09694 helicase Cas3; Provis 100.0 1.4E-28 2.9E-33 264.3 33.8 339 48-470 284-664 (878)
80 KOG0951 RNA helicase BRR2, DEA 100.0 2E-29 4.4E-34 263.8 23.4 367 47-518 306-736 (1674)
81 COG1197 Mfd Transcription-repa 100.0 2.3E-28 5.1E-33 259.8 30.4 328 35-480 579-912 (1139)
82 COG1061 SSL2 DNA or RNA helica 100.0 7.6E-29 1.6E-33 252.4 25.1 297 49-468 35-376 (442)
83 PRK04914 ATP-dependent helicas 100.0 4.3E-28 9.2E-33 262.0 27.3 123 356-480 478-602 (956)
84 PRK05580 primosome assembly pr 100.0 6.9E-28 1.5E-32 257.1 28.2 320 50-480 144-548 (679)
85 KOG0353 ATP-dependent DNA heli 100.0 1.4E-28 3.1E-33 228.5 17.0 343 35-491 78-477 (695)
86 PRK11131 ATP-dependent RNA hel 100.0 6.7E-28 1.5E-32 263.8 23.7 225 210-485 162-415 (1294)
87 COG4098 comFA Superfamily II D 100.0 1.2E-26 2.7E-31 213.6 22.4 325 49-497 96-434 (441)
88 TIGR00595 priA primosomal prot 100.0 4.9E-27 1.1E-31 241.9 22.2 295 73-478 1-378 (505)
89 PRK11448 hsdR type I restricti 100.0 6.5E-27 1.4E-31 258.4 23.8 325 49-479 412-813 (1123)
90 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1E-26 2.2E-31 255.6 25.1 227 210-485 155-408 (1283)
91 COG0556 UvrB Helicase subunit 99.9 2.9E-26 6.3E-31 222.7 21.0 164 305-480 386-556 (663)
92 TIGR01407 dinG_rel DnaQ family 99.9 4.6E-25 1E-29 242.6 28.6 452 33-494 229-829 (850)
93 cd00268 DEADc DEAD-box helicas 99.9 1.4E-25 3.1E-30 206.7 20.2 201 24-333 1-202 (203)
94 PRK13104 secA preprotein trans 99.9 9.7E-25 2.1E-29 229.9 25.5 352 69-494 95-607 (896)
95 KOG0950 DNA polymerase theta/e 99.9 8.4E-25 1.8E-29 225.9 19.0 352 35-491 207-621 (1008)
96 PRK12904 preprotein translocas 99.9 7.6E-24 1.7E-28 223.0 25.1 355 46-482 78-574 (830)
97 PRK12906 secA preprotein trans 99.9 7.6E-24 1.7E-28 222.1 24.4 123 355-482 422-554 (796)
98 PLN03142 Probable chromatin-re 99.9 5.1E-23 1.1E-27 223.5 26.8 119 356-477 470-593 (1033)
99 COG1203 CRISPR-associated heli 99.9 2.2E-23 4.7E-28 224.8 21.4 343 50-481 195-550 (733)
100 COG4581 Superfamily II RNA hel 99.9 3.8E-23 8.2E-28 220.3 21.2 322 42-480 112-536 (1041)
101 KOG0947 Cytoplasmic exosomal R 99.9 5.2E-23 1.1E-27 211.3 19.5 325 46-490 294-734 (1248)
102 PRK13107 preprotein translocas 99.9 1.8E-22 3.8E-27 212.2 23.7 365 50-494 82-611 (908)
103 PRK07246 bifunctional ATP-depe 99.9 1.6E-21 3.5E-26 211.6 30.2 431 47-495 243-799 (820)
104 PRK12899 secA preprotein trans 99.9 1.4E-21 3E-26 205.8 28.3 144 35-249 69-228 (970)
105 TIGR00631 uvrb excinuclease AB 99.9 3.8E-21 8.2E-26 203.0 30.9 125 355-483 424-555 (655)
106 PRK08074 bifunctional ATP-depe 99.9 8.1E-22 1.8E-26 217.8 26.6 199 47-250 255-469 (928)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 1.7E-22 3.6E-27 180.6 17.0 149 52-266 1-149 (169)
108 COG1643 HrpA HrpA-like helicas 99.9 6.2E-22 1.4E-26 209.9 21.8 304 68-484 64-390 (845)
109 KOG0948 Nuclear exosomal RNA h 99.9 4.6E-23 9.9E-28 206.8 11.5 321 50-489 129-548 (1041)
110 COG4096 HsdR Type I site-speci 99.9 3.1E-21 6.8E-26 197.8 24.3 305 48-469 163-526 (875)
111 COG1110 Reverse gyrase [DNA re 99.9 6.6E-21 1.4E-25 198.2 26.2 319 47-452 80-416 (1187)
112 COG1198 PriA Primosomal protei 99.9 9.4E-22 2E-26 205.5 19.8 319 49-480 197-602 (730)
113 PRK11747 dinG ATP-dependent DN 99.9 3.4E-20 7.3E-25 198.8 28.2 200 47-250 23-260 (697)
114 TIGR00348 hsdR type I site-spe 99.9 2.9E-20 6.3E-25 198.7 27.0 124 371-495 514-663 (667)
115 KOG0922 DEAH-box RNA helicase 99.9 6.5E-21 1.4E-25 191.2 18.2 229 211-485 140-394 (674)
116 PRK05298 excinuclease ABC subu 99.9 2.1E-19 4.6E-24 191.3 29.9 151 356-513 429-595 (652)
117 TIGR03117 cas_csf4 CRISPR-asso 99.9 4.3E-20 9.4E-25 191.8 23.9 192 55-250 2-220 (636)
118 KOG0385 Chromatin remodeling c 99.9 1.7E-19 3.7E-24 182.1 25.0 372 49-494 166-614 (971)
119 KOG1123 RNA polymerase II tran 99.8 2.8E-19 6.1E-24 172.5 19.3 314 49-487 301-659 (776)
120 COG1199 DinG Rad3-related DNA 99.8 1.8E-18 3.8E-23 187.2 26.0 77 45-124 10-86 (654)
121 KOG0949 Predicted helicase, DE 99.8 4.4E-19 9.5E-24 183.0 19.1 91 401-491 965-1056(1330)
122 PRK12900 secA preprotein trans 99.8 4E-19 8.7E-24 187.8 19.3 124 354-482 579-712 (1025)
123 KOG0923 mRNA splicing factor A 99.8 2.7E-18 5.9E-23 170.8 21.0 225 211-482 355-607 (902)
124 KOG0926 DEAH-box RNA helicase 99.8 6.3E-19 1.4E-23 178.4 16.8 319 62-481 264-704 (1172)
125 TIGR00604 rad3 DNA repair heli 99.8 5E-18 1.1E-22 183.7 23.0 196 46-250 6-234 (705)
126 COG4889 Predicted helicase [Ge 99.8 4.8E-19 1E-23 180.6 12.7 376 39-495 150-615 (1518)
127 KOG0920 ATP-dependent RNA heli 99.8 5.7E-18 1.2E-22 179.2 20.5 310 68-486 187-549 (924)
128 KOG0384 Chromodomain-helicase 99.8 1.4E-18 3E-23 183.7 12.5 371 49-481 369-811 (1373)
129 KOG0924 mRNA splicing factor A 99.8 2.2E-17 4.7E-22 164.8 19.4 221 211-481 445-697 (1042)
130 PRK12326 preprotein translocas 99.8 2.9E-16 6.2E-21 162.0 26.0 355 46-482 75-548 (764)
131 PRK13103 secA preprotein trans 99.7 2.6E-16 5.7E-21 166.2 21.9 124 353-482 429-592 (913)
132 KOG0951 RNA helicase BRR2, DEA 99.7 2.2E-17 4.8E-22 174.4 13.5 321 52-491 1145-1504(1674)
133 smart00487 DEXDc DEAD-like hel 99.7 5E-16 1.1E-20 142.1 18.0 186 46-336 4-191 (201)
134 KOG0390 DNA repair protein, SN 99.7 7.4E-16 1.6E-20 160.7 20.7 377 50-489 238-717 (776)
135 cd00079 HELICc Helicase superf 99.7 1.4E-16 3E-21 135.7 12.3 118 357-477 12-131 (131)
136 KOG0387 Transcription-coupled 99.7 6.4E-16 1.4E-20 157.3 18.1 366 49-477 204-652 (923)
137 KOG0925 mRNA splicing factor A 99.7 8.6E-16 1.9E-20 148.2 17.3 332 21-482 24-388 (699)
138 KOG0953 Mitochondrial RNA heli 99.7 1.2E-15 2.6E-20 149.6 17.1 278 72-491 194-486 (700)
139 KOG0389 SNF2 family DNA-depend 99.7 2.2E-15 4.8E-20 153.3 18.3 124 356-482 760-889 (941)
140 KOG4150 Predicted ATP-dependen 99.7 9.6E-16 2.1E-20 150.3 14.5 346 41-486 277-645 (1034)
141 PF06862 DUF1253: Protein of u 99.7 3.7E-14 8E-19 140.7 24.6 355 95-491 31-425 (442)
142 PF00271 Helicase_C: Helicase 99.7 4E-16 8.6E-21 119.8 8.4 77 390-469 2-78 (78)
143 PRK12903 secA preprotein trans 99.6 1.3E-14 2.8E-19 152.0 20.8 167 307-482 363-540 (925)
144 CHL00122 secA preprotein trans 99.6 2.2E-14 4.8E-19 151.1 22.6 131 46-249 73-209 (870)
145 KOG1000 Chromatin remodeling p 99.6 5E-14 1.1E-18 136.5 20.4 105 370-477 491-597 (689)
146 KOG0392 SNF2 family DNA-depend 99.6 7.3E-14 1.6E-18 148.0 20.5 124 354-477 1307-1448(1549)
147 PF04851 ResIII: Type III rest 99.6 8.2E-15 1.8E-19 132.6 10.3 65 50-121 3-70 (184)
148 PRK12902 secA preprotein trans 99.6 7.3E-13 1.6E-17 139.5 24.5 127 50-248 85-217 (939)
149 TIGR02562 cas3_yersinia CRISPR 99.5 6.9E-13 1.5E-17 141.8 23.0 110 374-486 759-899 (1110)
150 cd00046 DEXDc DEAD-like helica 99.5 3.5E-13 7.6E-18 115.8 15.4 120 70-253 1-120 (144)
151 smart00490 HELICc helicase sup 99.5 1.2E-13 2.5E-18 107.0 8.8 81 386-469 2-82 (82)
152 PRK14873 primosome assembly pr 99.5 2.3E-12 4.9E-17 136.4 19.0 105 73-247 164-268 (665)
153 smart00489 DEXDc3 DEAD-like he 99.5 2E-13 4.2E-18 131.6 9.8 79 46-125 5-85 (289)
154 smart00488 DEXDc2 DEAD-like he 99.5 2E-13 4.2E-18 131.6 9.8 79 46-125 5-85 (289)
155 KOG0386 Chromatin remodeling c 99.5 5.6E-13 1.2E-17 139.2 13.7 361 48-480 392-835 (1157)
156 KOG2340 Uncharacterized conser 99.4 8.3E-12 1.8E-16 122.2 19.3 397 49-490 215-677 (698)
157 PRK12901 secA preprotein trans 99.4 2.1E-11 4.5E-16 130.1 20.3 134 355-494 610-761 (1112)
158 KOG0388 SNF2 family DNA-depend 99.4 1.5E-11 3.4E-16 123.9 17.1 119 356-477 1027-1148(1185)
159 KOG0391 SNF2 family DNA-depend 99.3 1.6E-10 3.5E-15 122.1 22.9 122 356-480 1259-1384(1958)
160 PF02399 Herpes_ori_bp: Origin 99.3 5.3E-10 1.1E-14 117.1 21.1 113 360-482 270-389 (824)
161 KOG1002 Nucleotide excision re 99.2 4.5E-10 9.8E-15 109.3 18.1 123 357-482 620-750 (791)
162 KOG4439 RNA polymerase II tran 99.2 1.1E-09 2.5E-14 110.9 20.6 119 356-477 728-852 (901)
163 PF07652 Flavi_DEAD: Flaviviru 99.2 2.9E-10 6.4E-15 94.5 11.7 50 69-121 4-53 (148)
164 KOG1132 Helicase of the DEAD s 99.1 5.1E-09 1.1E-13 109.2 18.9 197 46-249 18-260 (945)
165 COG0553 HepA Superfamily II DN 99.1 3.3E-09 7.1E-14 119.6 18.1 118 357-477 692-816 (866)
166 COG0610 Type I site-specific r 99.0 8.3E-09 1.8E-13 114.4 18.7 74 421-497 590-667 (962)
167 PF00176 SNF2_N: SNF2 family N 99.0 1.1E-09 2.4E-14 107.2 8.7 133 54-248 1-146 (299)
168 KOG1133 Helicase of the DEAD s 98.9 3E-07 6.4E-12 93.8 24.0 125 370-497 628-800 (821)
169 COG0653 SecA Preprotein transl 98.9 2.2E-08 4.8E-13 105.8 16.7 121 355-480 411-544 (822)
170 KOG1015 Transcription regulato 98.9 4.9E-08 1.1E-12 102.1 18.7 122 356-477 1125-1271(1567)
171 KOG1131 RNA polymerase II tran 98.9 1.6E-07 3.5E-12 92.5 20.2 79 46-124 12-90 (755)
172 PF13307 Helicase_C_2: Helicas 98.7 3.4E-08 7.3E-13 87.4 7.7 108 370-481 8-150 (167)
173 PF07517 SecA_DEAD: SecA DEAD- 98.7 2.7E-07 5.9E-12 86.7 13.7 131 46-249 74-210 (266)
174 KOG0921 Dosage compensation co 98.6 8.5E-07 1.8E-11 92.7 16.3 117 370-487 642-780 (1282)
175 PF13086 AAA_11: AAA domain; P 98.6 1.2E-07 2.6E-12 89.1 7.3 69 50-123 1-75 (236)
176 PRK15483 type III restriction- 98.5 4.4E-07 9.5E-12 98.4 10.6 73 424-496 501-583 (986)
177 KOG0952 DNA/RNA helicase MER3/ 98.3 2.7E-07 6E-12 98.1 3.1 132 50-249 927-1059(1230)
178 KOG1802 RNA helicase nonsense 98.1 1.9E-05 4E-10 80.6 11.5 76 42-124 402-477 (935)
179 KOG1803 DNA helicase [Replicat 98.1 2.1E-05 4.6E-10 79.8 10.4 66 49-121 184-249 (649)
180 PF02562 PhoH: PhoH-like prote 98.0 7.5E-06 1.6E-10 73.9 5.7 60 48-113 2-61 (205)
181 smart00492 HELICc3 helicase su 98.0 4.1E-05 8.8E-10 65.3 9.0 77 404-480 27-137 (141)
182 PF13604 AAA_30: AAA domain; P 98.0 1.4E-05 3E-10 72.7 6.3 61 50-117 1-62 (196)
183 smart00491 HELICc2 helicase su 97.9 4.5E-05 9.6E-10 65.2 8.6 71 410-480 30-138 (142)
184 COG3587 Restriction endonuclea 97.9 0.00043 9.3E-09 73.1 16.9 74 424-497 483-569 (985)
185 PF13872 AAA_34: P-loop contai 97.9 5.4E-05 1.2E-09 71.6 8.3 65 49-116 36-106 (303)
186 KOG1016 Predicted DNA helicase 97.9 0.0021 4.6E-08 67.1 20.1 112 371-482 719-848 (1387)
187 PF13245 AAA_19: Part of AAA d 97.9 5.5E-05 1.2E-09 56.9 6.7 53 69-121 10-62 (76)
188 TIGR00596 rad1 DNA repair prot 97.8 0.00029 6.3E-09 76.8 14.7 40 210-250 6-45 (814)
189 PRK10536 hypothetical protein; 97.8 8E-05 1.7E-09 69.3 8.3 63 47-115 56-118 (262)
190 TIGR00376 DNA helicase, putati 97.8 0.00014 3.1E-09 77.9 11.2 68 49-123 156-223 (637)
191 PF09848 DUF2075: Uncharacteri 97.7 0.00014 3E-09 72.8 8.4 48 71-120 3-50 (352)
192 PF12340 DUF3638: Protein of u 97.7 0.00047 1E-08 63.0 10.8 78 37-120 11-88 (229)
193 KOG1805 DNA replication helica 97.7 0.00026 5.7E-09 75.6 10.4 143 48-249 667-809 (1100)
194 PF00580 UvrD-helicase: UvrD/R 97.6 0.00019 4E-09 70.6 8.8 72 51-128 1-72 (315)
195 PRK10919 ATP-dependent DNA hel 97.3 0.00083 1.8E-08 72.9 9.0 90 50-145 2-91 (672)
196 TIGR01448 recD_rel helicase, p 97.3 0.0012 2.6E-08 72.0 10.0 64 46-116 320-383 (720)
197 PRK13889 conjugal transfer rel 97.2 0.002 4.4E-08 71.7 11.1 63 46-116 343-405 (988)
198 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0027 5.9E-08 69.5 11.8 61 49-116 351-411 (744)
199 COG3421 Uncharacterized protei 97.2 0.0034 7.4E-08 64.0 11.4 41 74-117 2-42 (812)
200 PRK10875 recD exonuclease V su 97.2 0.0025 5.5E-08 67.7 10.5 64 52-120 154-218 (615)
201 TIGR01447 recD exodeoxyribonuc 97.1 0.002 4.4E-08 68.2 8.7 63 53-120 148-212 (586)
202 PF05970 PIF1: PIF1-like helic 97.0 0.0013 2.9E-08 65.9 6.9 63 50-116 1-65 (364)
203 TIGR01074 rep ATP-dependent DN 97.0 0.0026 5.7E-08 69.4 9.4 90 50-145 1-90 (664)
204 PRK06526 transposase; Provisio 97.0 0.0034 7.3E-08 59.4 8.5 73 22-116 68-140 (254)
205 KOG0989 Replication factor C, 97.0 0.0014 3.1E-08 61.5 5.7 35 54-88 40-76 (346)
206 TIGR01075 uvrD DNA helicase II 96.9 0.0027 6E-08 69.7 8.7 89 49-144 3-91 (715)
207 PRK13826 Dtr system oriT relax 96.9 0.0063 1.4E-07 68.3 11.3 74 35-116 367-440 (1102)
208 PRK11773 uvrD DNA-dependent he 96.9 0.0031 6.7E-08 69.3 8.7 90 49-145 8-97 (721)
209 PRK11054 helD DNA helicase IV; 96.8 0.0057 1.2E-07 66.1 9.6 89 48-145 194-282 (684)
210 PRK04296 thymidine kinase; Pro 96.6 0.0044 9.5E-08 56.0 6.2 37 70-110 3-39 (190)
211 KOG0383 Predicted helicase [Ge 96.6 0.00063 1.4E-08 71.8 0.6 80 354-437 612-696 (696)
212 PF13401 AAA_22: AAA domain; P 96.6 0.019 4.1E-07 48.2 9.5 19 69-87 4-22 (131)
213 TIGR01073 pcrA ATP-dependent D 96.6 0.0068 1.5E-07 66.8 8.5 89 49-144 3-91 (726)
214 PRK12723 flagellar biosynthesi 96.4 0.02 4.2E-07 57.5 9.8 38 70-108 175-213 (388)
215 COG1875 NYN ribonuclease and A 96.2 0.023 5E-07 55.0 8.5 67 46-116 224-291 (436)
216 PF13871 Helicase_C_4: Helicas 96.2 0.021 4.6E-07 54.1 8.2 80 415-494 52-143 (278)
217 TIGR02760 TraI_TIGR conjugativ 96.1 0.21 4.6E-06 60.6 17.8 62 50-117 429-490 (1960)
218 PF00308 Bac_DnaA: Bacterial d 96.0 0.046 1E-06 50.6 9.6 39 70-110 35-73 (219)
219 PRK06893 DNA replication initi 95.9 0.04 8.8E-07 51.4 8.5 17 70-86 40-56 (229)
220 cd00009 AAA The AAA+ (ATPases 95.8 0.049 1.1E-06 46.2 8.4 38 69-110 19-56 (151)
221 COG1435 Tdk Thymidine kinase [ 95.7 0.058 1.3E-06 47.8 8.3 41 69-113 4-44 (201)
222 PHA03333 putative ATPase subun 95.7 0.1 2.3E-06 55.1 11.3 71 50-124 169-239 (752)
223 TIGR02881 spore_V_K stage V sp 95.6 0.033 7.1E-07 53.2 6.8 18 70-87 43-60 (261)
224 PRK08084 DNA replication initi 95.5 0.075 1.6E-06 49.8 9.0 37 69-109 45-81 (235)
225 PRK14087 dnaA chromosomal repl 95.5 0.082 1.8E-06 54.5 10.0 44 70-116 142-185 (450)
226 TIGR02785 addA_Gpos recombinat 95.5 0.13 2.7E-06 60.1 12.4 64 51-121 2-65 (1232)
227 PRK14712 conjugal transfer nic 95.5 0.052 1.1E-06 63.3 9.0 64 50-116 835-899 (1623)
228 PHA03368 DNA packaging termina 95.5 0.19 4E-06 53.1 12.1 54 69-124 254-307 (738)
229 CHL00181 cbbX CbbX; Provisiona 95.4 0.07 1.5E-06 51.5 8.6 20 69-88 59-78 (287)
230 TIGR02880 cbbX_cfxQ probable R 95.4 0.092 2E-06 50.7 9.4 18 69-86 58-75 (284)
231 COG1474 CDC6 Cdc6-related prot 95.3 0.091 2E-06 52.5 9.0 27 70-97 43-69 (366)
232 PRK00149 dnaA chromosomal repl 95.2 0.11 2.3E-06 54.0 9.5 44 70-116 149-192 (450)
233 PRK10917 ATP-dependent DNA hel 95.1 0.11 2.4E-06 56.8 9.8 79 370-448 309-389 (681)
234 PRK13709 conjugal transfer nic 95.1 0.094 2E-06 62.1 9.5 65 49-116 966-1031(1747)
235 PRK05642 DNA replication initi 95.0 0.13 2.8E-06 48.2 8.7 36 70-109 46-81 (234)
236 KOG1001 Helicase-like transcri 95.0 0.063 1.4E-06 57.6 7.3 102 372-476 540-643 (674)
237 PRK08727 hypothetical protein; 94.9 0.084 1.8E-06 49.4 7.3 36 69-108 41-76 (233)
238 PRK12377 putative replication 94.9 0.038 8.2E-07 52.0 4.9 42 70-116 102-143 (248)
239 cd01120 RecA-like_NTPases RecA 94.9 0.41 8.8E-06 41.4 11.3 38 72-113 2-39 (165)
240 TIGR00595 priA primosomal prot 94.9 0.18 3.9E-06 52.9 10.3 92 355-449 7-100 (505)
241 PRK08181 transposase; Validate 94.9 0.35 7.5E-06 46.1 11.3 75 22-117 75-149 (269)
242 PRK14086 dnaA chromosomal repl 94.8 0.14 3E-06 54.1 9.3 44 70-116 315-358 (617)
243 PTZ00112 origin recognition co 94.8 0.16 3.5E-06 55.4 9.6 44 51-95 759-806 (1164)
244 PF03354 Terminase_1: Phage Te 94.8 0.051 1.1E-06 56.7 6.0 72 53-124 1-77 (477)
245 TIGR00362 DnaA chromosomal rep 94.8 0.14 3E-06 52.3 9.1 38 70-109 137-174 (405)
246 PRK05580 primosome assembly pr 94.7 0.22 4.8E-06 54.3 10.7 91 356-449 173-265 (679)
247 COG0593 DnaA ATPase involved i 94.6 0.2 4.4E-06 50.2 9.3 39 69-109 113-151 (408)
248 TIGR00643 recG ATP-dependent D 94.6 0.18 4E-06 54.6 9.9 79 370-448 283-363 (630)
249 PF01695 IstB_IS21: IstB-like 94.6 0.33 7.1E-06 43.3 9.8 45 68-117 46-90 (178)
250 TIGR02760 TraI_TIGR conjugativ 94.6 0.1 2.3E-06 63.2 8.5 63 49-116 1018-1083(1960)
251 PTZ00293 thymidine kinase; Pro 94.5 0.12 2.5E-06 47.0 6.8 40 69-112 4-43 (211)
252 COG2256 MGS1 ATPase related to 94.4 0.17 3.8E-06 49.8 8.2 40 70-116 49-88 (436)
253 PRK14873 primosome assembly pr 94.4 0.29 6.3E-06 52.9 10.7 94 355-450 170-265 (665)
254 PRK08116 hypothetical protein; 94.4 0.2 4.3E-06 47.9 8.4 42 70-116 115-156 (268)
255 PF14617 CMS1: U3-containing 9 94.3 0.13 2.8E-06 48.2 6.7 35 211-246 177-211 (252)
256 PRK14964 DNA polymerase III su 94.2 0.1 2.2E-06 54.0 6.5 19 70-88 36-54 (491)
257 PF02456 Adeno_IVa2: Adenoviru 94.2 0.12 2.6E-06 49.0 6.2 38 72-114 90-130 (369)
258 COG2805 PilT Tfp pilus assembl 94.1 0.093 2E-06 49.7 5.3 55 14-97 98-152 (353)
259 PRK13894 conjugal transfer ATP 94.1 0.098 2.1E-06 51.2 5.8 60 50-114 132-191 (319)
260 PRK14088 dnaA chromosomal repl 94.1 0.22 4.9E-06 51.2 8.7 38 70-109 131-168 (440)
261 PRK14956 DNA polymerase III su 94.0 0.1 2.2E-06 53.5 6.0 18 71-88 42-59 (484)
262 COG4962 CpaF Flp pilus assembl 94.0 0.088 1.9E-06 50.9 5.1 62 47-116 154-215 (355)
263 TIGR03420 DnaA_homol_Hda DnaA 93.9 0.23 5E-06 46.1 7.8 19 69-87 38-56 (226)
264 PRK14974 cell division protein 93.9 0.42 9.1E-06 47.1 9.8 34 71-108 142-175 (336)
265 PF06733 DEAD_2: DEAD_2; Inte 93.8 0.02 4.3E-07 50.9 0.3 52 199-250 107-159 (174)
266 COG4626 Phage terminase-like p 93.8 0.89 1.9E-05 47.0 12.0 71 50-121 61-138 (546)
267 PRK14722 flhF flagellar biosyn 93.7 0.17 3.6E-06 50.5 6.8 20 69-88 137-156 (374)
268 PRK00411 cdc6 cell division co 93.6 0.22 4.7E-06 50.7 7.8 36 70-107 56-91 (394)
269 PF05621 TniB: Bacterial TniB 93.6 0.24 5.3E-06 47.4 7.4 16 70-85 62-77 (302)
270 PRK13833 conjugal transfer pro 93.6 0.16 3.4E-06 49.8 6.2 60 50-114 128-187 (323)
271 PF06309 Torsin: Torsin; Inte 93.6 0.2 4.4E-06 41.3 5.9 41 69-110 51-93 (127)
272 TIGR02928 orc1/cdc6 family rep 93.5 0.28 6E-06 49.4 8.2 26 69-95 40-65 (365)
273 KOG0701 dsRNA-specific nucleas 93.5 0.051 1.1E-06 62.8 3.1 95 373-469 294-399 (1606)
274 TIGR02782 TrbB_P P-type conjug 93.5 0.2 4.2E-06 48.8 6.7 60 50-114 116-175 (299)
275 PRK14962 DNA polymerase III su 93.5 0.17 3.8E-06 52.4 6.7 18 71-88 38-55 (472)
276 PRK12422 chromosomal replicati 93.4 0.25 5.5E-06 50.8 7.8 36 70-109 142-177 (445)
277 COG1110 Reverse gyrase [DNA re 93.4 0.32 6.9E-06 53.4 8.6 89 362-450 116-211 (1187)
278 PHA02533 17 large terminase pr 93.4 0.6 1.3E-05 49.2 10.6 68 50-123 59-126 (534)
279 KOG0742 AAA+-type ATPase [Post 93.4 0.11 2.3E-06 51.1 4.6 66 8-85 323-400 (630)
280 PRK06645 DNA polymerase III su 93.4 0.22 4.7E-06 52.0 7.2 34 55-88 26-62 (507)
281 PRK14961 DNA polymerase III su 93.3 0.15 3.2E-06 51.3 5.7 35 54-88 20-57 (363)
282 TIGR00580 mfd transcription-re 93.3 0.52 1.1E-05 53.0 10.3 79 370-448 499-579 (926)
283 COG0210 UvrD Superfamily I DNA 93.2 0.32 7E-06 53.1 8.6 90 50-145 2-91 (655)
284 COG1198 PriA Primosomal protei 93.1 0.35 7.6E-06 52.3 8.3 93 353-448 225-319 (730)
285 PRK11823 DNA repair protein Ra 93.1 0.43 9.3E-06 49.2 8.7 54 58-116 68-122 (446)
286 COG1197 Mfd Transcription-repa 93.0 1.9 4.2E-05 48.5 14.0 91 358-448 628-722 (1139)
287 cd01121 Sms Sms (bacterial rad 93.0 0.55 1.2E-05 47.1 9.2 54 58-116 70-124 (372)
288 PRK14949 DNA polymerase III su 93.0 0.15 3.3E-06 55.9 5.5 18 71-88 40-57 (944)
289 COG1419 FlhF Flagellar GTP-bin 93.0 0.42 9.2E-06 47.5 8.1 26 69-94 203-228 (407)
290 COG3973 Superfamily I DNA and 92.9 0.4 8.8E-06 49.7 8.0 76 69-148 226-303 (747)
291 COG2804 PulE Type II secretory 92.8 0.14 3.1E-06 52.1 4.7 44 51-97 242-285 (500)
292 PRK05703 flhF flagellar biosyn 92.8 0.47 1E-05 48.5 8.6 20 69-88 221-240 (424)
293 PRK09183 transposase/IS protei 92.8 0.39 8.5E-06 45.7 7.5 44 68-116 101-144 (259)
294 COG1484 DnaC DNA replication p 92.6 0.29 6.3E-06 46.3 6.3 48 68-120 104-151 (254)
295 cd01122 GP4d_helicase GP4d_hel 92.6 0.67 1.5E-05 44.4 9.0 44 63-109 24-67 (271)
296 PRK14960 DNA polymerase III su 92.6 0.28 6.1E-06 52.2 6.7 19 70-88 38-56 (702)
297 COG1444 Predicted P-loop ATPas 92.6 0.51 1.1E-05 50.9 8.6 68 50-119 211-279 (758)
298 KOG0738 AAA+-type ATPase [Post 92.5 0.28 6E-06 48.1 5.9 39 70-116 246-284 (491)
299 TIGR03499 FlhF flagellar biosy 92.4 0.55 1.2E-05 45.3 8.0 19 70-88 195-213 (282)
300 KOG0991 Replication factor C, 92.3 0.32 6.8E-06 44.4 5.7 32 234-266 111-142 (333)
301 PRK05973 replicative DNA helic 92.3 0.42 9.1E-06 44.5 6.8 72 35-110 25-101 (237)
302 PRK07003 DNA polymerase III su 92.3 0.27 5.9E-06 53.0 6.2 18 71-88 40-57 (830)
303 KOG0298 DEAD box-containing he 92.2 0.52 1.1E-05 52.9 8.3 164 56-322 361-557 (1394)
304 PRK10689 transcription-repair 92.2 0.58 1.3E-05 53.9 9.1 79 370-448 648-728 (1147)
305 PHA02544 44 clamp loader, smal 92.2 0.76 1.6E-05 45.2 8.9 28 236-263 100-127 (316)
306 PRK14958 DNA polymerase III su 92.1 0.18 4E-06 52.8 4.6 19 70-88 39-57 (509)
307 PRK05707 DNA polymerase III su 92.0 1.5 3.2E-05 43.2 10.6 45 50-95 3-47 (328)
308 PRK04195 replication factor C 91.9 0.52 1.1E-05 49.3 7.8 18 69-86 39-56 (482)
309 PRK09111 DNA polymerase III su 91.8 0.48 1.1E-05 50.6 7.5 34 55-88 29-65 (598)
310 PRK07994 DNA polymerase III su 91.8 0.26 5.7E-06 52.8 5.4 34 55-88 21-57 (647)
311 PF05127 Helicase_RecD: Helica 91.8 0.033 7.2E-07 49.1 -1.1 45 73-120 1-45 (177)
312 cd01130 VirB11-like_ATPase Typ 91.7 0.41 8.8E-06 43.0 5.9 34 49-85 8-41 (186)
313 TIGR02640 gas_vesic_GvpN gas v 91.5 0.12 2.5E-06 49.4 2.3 36 52-87 4-39 (262)
314 PRK14963 DNA polymerase III su 91.5 0.4 8.6E-06 50.2 6.3 24 71-95 38-61 (504)
315 PRK12323 DNA polymerase III su 91.4 0.28 6.1E-06 52.1 5.0 25 70-95 39-63 (700)
316 PF13177 DNA_pol3_delta2: DNA 91.4 0.6 1.3E-05 40.9 6.5 42 55-97 2-46 (162)
317 PRK13851 type IV secretion sys 91.3 0.35 7.5E-06 47.9 5.3 42 68-114 161-202 (344)
318 PF10593 Z1: Z1 domain; Inter 91.2 0.88 1.9E-05 42.6 7.7 86 399-490 111-202 (239)
319 CHL00095 clpC Clp protease ATP 91.1 0.26 5.5E-06 55.2 4.7 34 53-86 512-556 (821)
320 PRK05896 DNA polymerase III su 91.0 0.25 5.5E-06 52.2 4.3 24 70-94 39-62 (605)
321 PRK08769 DNA polymerase III su 91.0 2 4.4E-05 42.0 10.3 46 49-95 3-51 (319)
322 COG2255 RuvB Holliday junction 90.9 1.2 2.6E-05 42.1 8.0 18 70-87 53-70 (332)
323 KOG0744 AAA+-type ATPase [Post 90.8 1.1 2.3E-05 43.2 7.7 54 69-123 177-232 (423)
324 PRK14951 DNA polymerase III su 90.8 0.41 9E-06 51.1 5.6 34 55-88 21-57 (618)
325 PRK12727 flagellar biosynthesi 90.7 2.6 5.7E-05 43.9 11.1 20 68-87 349-368 (559)
326 COG1219 ClpX ATP-dependent pro 90.6 0.22 4.8E-06 47.5 3.1 26 69-96 97-122 (408)
327 KOG2028 ATPase related to the 90.6 0.64 1.4E-05 45.3 6.2 43 70-116 163-205 (554)
328 TIGR02524 dot_icm_DotB Dot/Icm 90.5 0.55 1.2E-05 46.8 6.0 27 68-95 133-159 (358)
329 COG3972 Superfamily I DNA and 90.5 0.68 1.5E-05 46.9 6.4 74 39-120 152-225 (660)
330 PRK11889 flhF flagellar biosyn 90.4 1.5 3.2E-05 44.0 8.6 35 70-108 242-276 (436)
331 PRK14957 DNA polymerase III su 90.3 0.52 1.1E-05 49.6 5.9 34 55-88 21-57 (546)
332 PRK08451 DNA polymerase III su 90.3 0.37 8E-06 50.5 4.8 25 70-95 37-61 (535)
333 smart00382 AAA ATPases associa 90.3 0.3 6.5E-06 40.8 3.6 42 69-114 2-43 (148)
334 cd00984 DnaB_C DnaB helicase C 90.3 0.51 1.1E-05 44.3 5.3 48 60-110 4-51 (242)
335 TIGR03877 thermo_KaiC_1 KaiC d 90.2 0.55 1.2E-05 44.0 5.5 54 59-117 10-64 (237)
336 PRK06921 hypothetical protein; 90.1 0.76 1.6E-05 43.9 6.4 44 69-116 117-160 (266)
337 PF03796 DnaB_C: DnaB-like hel 90.1 0.74 1.6E-05 43.8 6.4 50 58-110 8-57 (259)
338 PRK08691 DNA polymerase III su 90.1 0.28 6.1E-06 52.6 3.7 19 70-88 39-57 (709)
339 PF05876 Terminase_GpA: Phage 90.0 0.37 8E-06 51.2 4.5 65 49-118 15-79 (557)
340 PHA03372 DNA packaging termina 89.9 2.3 5E-05 44.7 9.9 50 69-120 202-251 (668)
341 PHA02244 ATPase-like protein 89.9 0.2 4.4E-06 49.5 2.3 20 67-86 117-136 (383)
342 PRK06835 DNA replication prote 89.9 0.37 8.1E-06 47.4 4.1 43 69-116 183-225 (329)
343 PRK14965 DNA polymerase III su 89.6 0.52 1.1E-05 50.4 5.3 19 70-88 39-57 (576)
344 PRK14952 DNA polymerase III su 89.5 0.4 8.6E-06 51.0 4.3 34 55-88 18-54 (584)
345 PRK13900 type IV secretion sys 89.5 0.39 8.5E-06 47.4 4.0 41 68-113 159-199 (332)
346 COG1200 RecG RecG-like helicas 89.5 2.1 4.6E-05 45.4 9.4 87 362-448 301-390 (677)
347 TIGR00767 rho transcription te 89.4 0.93 2E-05 45.4 6.5 30 56-86 156-185 (415)
348 PRK08699 DNA polymerase III su 89.3 3.7 7.9E-05 40.5 10.6 43 52-95 3-46 (325)
349 PRK09354 recA recombinase A; P 89.2 1.3 2.8E-05 43.8 7.3 54 58-115 47-102 (349)
350 PRK07764 DNA polymerase III su 89.2 0.44 9.4E-06 52.8 4.5 25 70-95 38-62 (824)
351 PRK12726 flagellar biosynthesi 89.2 1.4 3.1E-05 43.9 7.5 36 69-108 206-241 (407)
352 PF06745 KaiC: KaiC; InterPro 89.2 0.52 1.1E-05 43.8 4.5 40 68-110 18-57 (226)
353 PRK14954 DNA polymerase III su 89.1 0.83 1.8E-05 49.0 6.4 34 55-88 21-57 (620)
354 PF00448 SRP54: SRP54-type pro 89.0 2.4 5.2E-05 38.4 8.5 33 72-108 4-36 (196)
355 PRK10867 signal recognition pa 89.0 3.9 8.5E-05 41.8 10.8 40 72-114 103-144 (433)
356 COG0552 FtsY Signal recognitio 88.9 1.8 4E-05 41.9 7.9 33 72-108 142-174 (340)
357 TIGR03345 VI_ClpV1 type VI sec 88.9 1.2 2.6E-05 50.0 7.6 34 53-86 569-613 (852)
358 cd01128 rho_factor Transcripti 88.8 1.1 2.3E-05 42.4 6.2 28 57-85 5-32 (249)
359 TIGR01547 phage_term_2 phage t 88.8 1.1 2.5E-05 45.5 7.0 48 72-120 4-52 (396)
360 PF13555 AAA_29: P-loop contai 88.8 0.61 1.3E-05 33.2 3.4 25 69-95 23-47 (62)
361 TIGR00678 holB DNA polymerase 88.5 2.8 6.1E-05 37.5 8.7 25 70-95 15-39 (188)
362 cd01129 PulE-GspE PulE/GspE Th 88.5 0.87 1.9E-05 43.4 5.5 46 43-94 59-104 (264)
363 PRK14959 DNA polymerase III su 88.5 0.52 1.1E-05 50.1 4.3 19 70-88 39-57 (624)
364 PRK06871 DNA polymerase III su 88.5 3.7 8E-05 40.3 9.9 44 51-95 3-49 (325)
365 KOG1513 Nuclear helicase MOP-3 88.5 0.39 8.5E-06 51.1 3.3 61 418-478 851-920 (1300)
366 PHA00012 I assembly protein 88.5 1.6 3.4E-05 42.3 7.1 24 72-95 4-27 (361)
367 TIGR02525 plasmid_TraJ plasmid 88.5 1.2 2.5E-05 44.7 6.5 37 69-107 149-185 (372)
368 cd01126 TraG_VirD4 The TraG/Tr 88.5 0.33 7.1E-06 49.2 2.8 47 71-123 1-47 (384)
369 PRK05563 DNA polymerase III su 88.4 0.58 1.3E-05 49.8 4.6 19 70-88 39-57 (559)
370 KOG1513 Nuclear helicase MOP-3 88.3 0.62 1.3E-05 49.7 4.5 65 49-116 263-333 (1300)
371 PRK07471 DNA polymerase III su 88.1 2.3 5.1E-05 42.6 8.5 42 54-96 23-67 (365)
372 cd01124 KaiC KaiC is a circadi 88.1 0.65 1.4E-05 41.5 4.2 40 72-116 2-41 (187)
373 PRK06647 DNA polymerase III su 88.1 0.79 1.7E-05 48.7 5.3 19 70-88 39-57 (563)
374 cd01131 PilT Pilus retraction 87.8 0.71 1.5E-05 41.9 4.3 36 72-110 4-39 (198)
375 TIGR02639 ClpA ATP-dependent C 87.8 1.8 3.8E-05 47.9 8.1 37 50-86 182-220 (731)
376 KOG1001 Helicase-like transcri 87.8 0.096 2.1E-06 56.3 -1.7 108 71-249 154-267 (674)
377 PRK10436 hypothetical protein; 87.7 0.65 1.4E-05 48.0 4.3 42 51-95 202-243 (462)
378 PRK14701 reverse gyrase; Provi 87.5 2.2 4.7E-05 51.0 8.9 64 370-433 121-187 (1638)
379 PRK14950 DNA polymerase III su 87.4 0.66 1.4E-05 49.8 4.4 19 70-88 39-57 (585)
380 PF02534 T4SS-DNA_transf: Type 87.4 0.41 9E-06 50.0 2.8 48 70-123 45-92 (469)
381 COG0513 SrmB Superfamily II DN 87.3 2.6 5.6E-05 44.5 8.7 71 374-448 102-180 (513)
382 PRK13531 regulatory ATPase Rav 87.2 0.6 1.3E-05 48.0 3.7 33 54-86 24-56 (498)
383 PF01443 Viral_helicase1: Vira 87.1 0.33 7.2E-06 45.2 1.7 14 72-85 1-14 (234)
384 PRK13897 type IV secretion sys 87.1 0.5 1.1E-05 50.4 3.2 49 70-124 159-207 (606)
385 TIGR03878 thermo_KaiC_2 KaiC d 87.1 0.92 2E-05 43.1 4.8 38 68-109 35-72 (259)
386 PRK14723 flhF flagellar biosyn 87.1 2 4.3E-05 46.9 7.7 19 70-88 186-204 (767)
387 TIGR02397 dnaX_nterm DNA polym 87.1 2.3 4.9E-05 42.5 7.8 24 70-94 37-60 (355)
388 PRK07993 DNA polymerase III su 87.0 3.1 6.7E-05 41.2 8.5 45 50-95 2-49 (334)
389 PRK09376 rho transcription ter 87.0 1.9 4.1E-05 43.2 6.9 43 51-95 152-194 (416)
390 COG1074 RecB ATP-dependent exo 87.0 1.2 2.5E-05 51.8 6.3 57 68-124 15-72 (1139)
391 TIGR01425 SRP54_euk signal rec 86.8 8.6 0.00019 39.3 11.6 42 71-116 102-145 (429)
392 KOG1807 Helicases [Replication 86.7 1.5 3.2E-05 46.9 6.1 63 50-117 378-443 (1025)
393 PF12846 AAA_10: AAA-like doma 86.5 1.1 2.4E-05 43.3 5.2 42 70-115 2-43 (304)
394 PF00437 T2SE: Type II/IV secr 86.4 0.57 1.2E-05 44.9 3.0 42 68-113 126-167 (270)
395 PRK08903 DnaA regulatory inact 86.4 2 4.3E-05 39.9 6.5 38 68-109 41-78 (227)
396 KOG0331 ATP-dependent RNA heli 86.3 3.2 6.9E-05 43.0 8.3 86 88-242 330-415 (519)
397 TIGR00959 ffh signal recogniti 86.1 4.2 9.2E-05 41.6 9.1 41 71-114 101-143 (428)
398 TIGR00382 clpX endopeptidase C 86.0 0.65 1.4E-05 47.1 3.2 17 70-86 117-133 (413)
399 TIGR03819 heli_sec_ATPase heli 86.0 1.4 3.1E-05 43.6 5.6 56 51-114 163-218 (340)
400 PF01078 Mg_chelatase: Magnesi 85.8 0.37 7.9E-06 43.6 1.2 18 68-85 21-38 (206)
401 KOG0339 ATP-dependent RNA heli 85.7 7.8 0.00017 39.6 10.3 72 373-448 298-376 (731)
402 COG0630 VirB11 Type IV secreto 85.7 1.5 3.3E-05 42.9 5.5 59 48-114 125-183 (312)
403 PRK14953 DNA polymerase III su 85.6 0.97 2.1E-05 47.1 4.4 36 460-495 405-440 (486)
404 PRK07952 DNA replication prote 85.6 1.2 2.6E-05 41.8 4.6 34 70-107 100-133 (244)
405 TIGR02788 VirB11 P-type DNA tr 85.3 1.4 3E-05 43.1 5.1 18 68-85 143-160 (308)
406 TIGR00390 hslU ATP-dependent p 85.2 0.6 1.3E-05 47.0 2.5 17 70-86 48-64 (441)
407 COG0470 HolB ATPase involved i 85.2 5.2 0.00011 39.2 9.3 24 71-95 26-49 (325)
408 COG1111 MPH1 ERCC4-like helica 85.1 11 0.00023 38.8 11.0 127 366-498 54-191 (542)
409 TIGR02538 type_IV_pilB type IV 85.0 1 2.2E-05 48.0 4.3 46 43-94 295-340 (564)
410 TIGR01054 rgy reverse gyrase. 84.8 3.7 8.1E-05 47.7 8.9 79 370-448 120-205 (1171)
411 TIGR00763 lon ATP-dependent pr 84.7 2.9 6.4E-05 46.5 7.9 18 69-86 347-364 (775)
412 PRK06090 DNA polymerase III su 84.5 5.5 0.00012 39.0 8.8 45 50-95 3-50 (319)
413 PF13481 AAA_25: AAA domain; P 84.4 1.1 2.5E-05 40.2 3.8 58 62-120 24-88 (193)
414 TIGR01420 pilT_fam pilus retra 84.4 1.2 2.6E-05 44.3 4.3 41 69-112 122-162 (343)
415 TIGR03881 KaiC_arch_4 KaiC dom 84.3 1.8 4E-05 40.2 5.2 47 59-109 9-56 (229)
416 PF03969 AFG1_ATPase: AFG1-lik 84.2 9.6 0.00021 38.1 10.5 50 451-500 272-322 (362)
417 KOG0743 AAA+-type ATPase [Post 83.9 1 2.3E-05 45.2 3.5 74 12-97 187-261 (457)
418 PRK13850 type IV secretion sys 83.8 1.2 2.5E-05 48.3 4.0 48 70-123 140-187 (670)
419 PF01935 DUF87: Domain of unkn 83.7 1.8 3.9E-05 40.2 4.9 42 69-113 23-64 (229)
420 PRK06904 replicative DNA helic 83.7 11 0.00024 39.3 11.0 55 58-116 210-264 (472)
421 KOG0344 ATP-dependent RNA heli 83.6 5.4 0.00012 41.4 8.4 103 77-247 365-467 (593)
422 PF13207 AAA_17: AAA domain; P 83.3 0.71 1.5E-05 37.9 1.8 15 72-86 2-16 (121)
423 PF01580 FtsK_SpoIIIE: FtsK/Sp 83.3 1.8 3.9E-05 39.4 4.7 42 69-110 38-79 (205)
424 TIGR00416 sms DNA repair prote 83.2 4.6 0.0001 41.8 8.1 54 58-116 82-136 (454)
425 TIGR02655 circ_KaiC circadian 83.1 2 4.3E-05 45.0 5.4 57 59-119 10-67 (484)
426 KOG0389 SNF2 family DNA-depend 83.1 5.5 0.00012 42.9 8.4 73 361-437 438-512 (941)
427 cd01394 radB RadB. The archaea 82.7 2.5 5.4E-05 38.9 5.4 47 58-108 7-54 (218)
428 KOG0058 Peptide exporter, ABC 82.7 3.9 8.3E-05 43.8 7.2 62 204-265 586-651 (716)
429 cd00268 DEADc DEAD-box helicas 82.7 11 0.00024 33.9 9.7 76 370-449 68-150 (203)
430 cd01127 TrwB Bacterial conjuga 82.6 1.8 4E-05 44.2 4.8 48 68-119 41-88 (410)
431 TIGR02784 addA_alphas double-s 82.4 2.6 5.6E-05 49.3 6.5 55 69-124 10-64 (1141)
432 PF00004 AAA: ATPase family as 82.3 1.2 2.5E-05 37.0 2.8 15 72-86 1-15 (132)
433 PF12775 AAA_7: P-loop contain 82.3 0.92 2E-05 43.5 2.3 18 68-85 32-49 (272)
434 TIGR00064 ftsY signal recognit 82.2 8.8 0.00019 36.7 9.0 35 70-108 73-107 (272)
435 PRK08533 flagellar accessory p 82.1 2.6 5.7E-05 39.2 5.3 39 68-110 23-61 (230)
436 TIGR03880 KaiC_arch_3 KaiC dom 82.0 2.6 5.6E-05 39.0 5.2 53 60-117 6-59 (224)
437 KOG0739 AAA+-type ATPase [Post 81.9 3.7 8.1E-05 39.1 6.0 39 71-117 168-206 (439)
438 TIGR02533 type_II_gspE general 81.9 1.7 3.7E-05 45.3 4.3 40 52-94 227-266 (486)
439 PF07728 AAA_5: AAA domain (dy 81.7 0.8 1.7E-05 38.7 1.6 16 71-86 1-16 (139)
440 PF00158 Sigma54_activat: Sigm 81.7 2.2 4.8E-05 37.5 4.4 19 68-86 21-39 (168)
441 COG0467 RAD55 RecA-superfamily 81.7 2 4.3E-05 40.9 4.4 44 68-116 22-65 (260)
442 TIGR02012 tigrfam_recA protein 81.7 4 8.8E-05 39.9 6.5 55 58-116 42-98 (321)
443 PF13191 AAA_16: AAA ATPase do 81.6 1.4 3E-05 39.2 3.2 43 54-97 7-51 (185)
444 PF13479 AAA_24: AAA domain 81.5 3.1 6.8E-05 38.2 5.6 36 213-249 46-81 (213)
445 PRK09361 radB DNA repair and r 81.5 3 6.6E-05 38.6 5.5 49 58-110 11-60 (225)
446 PRK05342 clpX ATP-dependent pr 81.5 1.4 3E-05 44.8 3.4 18 69-86 108-125 (412)
447 TIGR02237 recomb_radB DNA repa 81.4 2.2 4.7E-05 39.0 4.5 38 69-110 12-49 (209)
448 PRK04328 hypothetical protein; 81.2 2.3 4.9E-05 40.2 4.6 46 59-108 12-58 (249)
449 PRK04841 transcriptional regul 81.2 7.7 0.00017 44.2 9.8 28 238-265 123-150 (903)
450 PRK13876 conjugal transfer cou 81.2 1.3 2.8E-05 47.9 3.2 50 69-124 144-193 (663)
451 KOG0330 ATP-dependent RNA heli 81.0 8.2 0.00018 38.1 8.1 84 360-447 118-209 (476)
452 PRK14729 miaA tRNA delta(2)-is 81.0 1.2 2.5E-05 43.1 2.6 19 69-87 4-22 (300)
453 PRK13880 conjugal transfer cou 81.0 1.2 2.7E-05 48.0 3.0 46 70-121 176-221 (636)
454 KOG0745 Putative ATP-dependent 80.9 0.97 2.1E-05 45.1 2.0 26 69-96 226-251 (564)
455 PRK08939 primosomal protein Dn 80.8 2.5 5.3E-05 41.3 4.8 43 69-116 156-198 (306)
456 PRK13822 conjugal transfer cou 80.8 1.7 3.7E-05 46.9 4.0 49 69-123 224-272 (641)
457 KOG0741 AAA+-type ATPase [Post 80.7 7 0.00015 40.3 7.9 55 24-86 218-273 (744)
458 PF03237 Terminase_6: Terminas 80.7 11 0.00024 37.6 9.8 42 73-116 1-42 (384)
459 TIGR02767 TraG-Ti Ti-type conj 80.7 1.7 3.7E-05 46.6 3.9 49 70-124 212-260 (623)
460 PRK11331 5-methylcytosine-spec 80.6 1.1 2.4E-05 45.7 2.3 26 61-86 186-211 (459)
461 PF05496 RuvB_N: Holliday junc 80.6 6.4 0.00014 36.2 7.0 18 70-87 51-68 (233)
462 cd00983 recA RecA is a bacter 80.5 4.7 0.0001 39.5 6.5 55 58-116 42-98 (325)
463 TIGR03015 pepcterm_ATPase puta 80.5 1.2 2.6E-05 42.6 2.4 38 50-87 23-61 (269)
464 PF13238 AAA_18: AAA domain; P 80.3 1.1 2.3E-05 37.1 1.8 15 72-86 1-15 (129)
465 PRK12402 replication factor C 80.1 1.4 2.9E-05 43.7 2.8 17 71-87 38-54 (337)
466 PRK06067 flagellar accessory p 80.1 3.4 7.3E-05 38.6 5.4 48 59-110 14-62 (234)
467 COG0606 Predicted ATPase with 80.1 1.1 2.4E-05 45.5 2.1 17 68-84 197-213 (490)
468 COG1136 SalX ABC-type antimicr 80.0 1.9 4.2E-05 39.7 3.5 29 67-97 29-57 (226)
469 COG2909 MalT ATP-dependent tra 79.7 7 0.00015 42.7 7.9 29 238-266 131-159 (894)
470 PF10412 TrwB_AAD_bind: Type I 79.6 2.5 5.4E-05 42.8 4.5 48 69-120 15-62 (386)
471 PRK06995 flhF flagellar biosyn 79.5 6 0.00013 41.1 7.2 20 69-88 256-275 (484)
472 KOG2228 Origin recognition com 79.5 14 0.0003 36.1 9.0 29 238-266 139-167 (408)
473 PRK14721 flhF flagellar biosyn 79.4 6.8 0.00015 39.9 7.5 19 69-87 191-209 (420)
474 PRK06731 flhF flagellar biosyn 79.3 12 0.00026 35.7 8.8 19 70-88 76-94 (270)
475 PRK12898 secA preprotein trans 79.2 13 0.00029 40.1 9.9 71 368-445 141-212 (656)
476 COG1223 Predicted ATPase (AAA+ 79.0 1.3 2.8E-05 41.3 2.0 17 69-85 151-167 (368)
477 KOG2036 Predicted P-loop ATPas 78.8 4.6 9.9E-05 42.8 6.0 63 51-116 254-319 (1011)
478 KOG1806 DEAD box containing he 78.5 3.2 7E-05 45.8 5.0 72 49-126 737-808 (1320)
479 PRK08058 DNA polymerase III su 78.4 6.9 0.00015 38.7 7.2 41 54-95 10-53 (329)
480 TIGR03743 SXT_TraD conjugative 78.2 6.7 0.00015 42.4 7.5 51 69-123 176-228 (634)
481 PRK11776 ATP-dependent RNA hel 78.2 17 0.00037 37.8 10.4 73 372-448 73-153 (460)
482 PRK10416 signal recognition pa 78.1 5.8 0.00013 38.9 6.4 35 70-108 115-149 (318)
483 PF01745 IPT: Isopentenyl tran 78.0 2.7 5.8E-05 38.1 3.7 16 72-87 4-19 (233)
484 PF07724 AAA_2: AAA domain (Cd 78.0 1.4 3.1E-05 38.9 1.9 17 70-86 4-20 (171)
485 PRK11634 ATP-dependent RNA hel 77.9 10 0.00022 41.1 8.8 75 370-448 73-155 (629)
486 COG1126 GlnQ ABC-type polar am 77.9 2.4 5.2E-05 38.5 3.3 28 67-96 26-53 (240)
487 PRK14971 DNA polymerase III su 77.8 1.9 4.2E-05 46.3 3.3 18 70-87 40-57 (614)
488 KOG2373 Predicted mitochondria 77.6 7.4 0.00016 37.9 6.6 55 59-117 263-320 (514)
489 PF09439 SRPRB: Signal recogni 77.5 1.6 3.5E-05 38.8 2.1 18 69-86 3-20 (181)
490 PRK04537 ATP-dependent RNA hel 77.3 11 0.00025 40.3 8.9 79 100-245 256-334 (572)
491 PRK08006 replicative DNA helic 76.9 24 0.00052 36.8 10.8 55 51-110 208-262 (471)
492 TIGR00614 recQ_fam ATP-depende 76.8 7.9 0.00017 40.4 7.5 60 371-433 51-110 (470)
493 KOG0333 U5 snRNP-like RNA heli 76.8 14 0.00029 38.2 8.5 50 168-241 541-590 (673)
494 PRK07004 replicative DNA helic 76.6 14 0.00031 38.3 9.1 55 51-110 197-251 (460)
495 PF13671 AAA_33: AAA domain; P 76.6 1.6 3.4E-05 37.0 1.8 14 72-85 2-15 (143)
496 PRK00131 aroK shikimate kinase 76.5 2 4.3E-05 37.7 2.5 20 67-86 2-21 (175)
497 PRK11192 ATP-dependent RNA hel 76.3 11 0.00024 38.9 8.3 74 371-448 73-153 (434)
498 PRK08840 replicative DNA helic 76.2 24 0.00051 36.7 10.6 55 51-110 201-255 (464)
499 KOG2004 Mitochondrial ATP-depe 76.1 3 6.6E-05 44.5 3.9 52 217-272 490-541 (906)
500 TIGR02688 conserved hypothetic 75.9 4.3 9.3E-05 41.1 4.8 49 38-87 175-227 (449)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-60 Score=443.59 Aligned_cols=380 Identities=35% Similarity=0.531 Sum_probs=345.2
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
-.+|.++. +++.+.++++..||..|+++|.++|+.++. |+|++..|.||||||.+|++|+++++.... .
T Consensus 60 ~~sf~dLg------v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~ 128 (476)
T KOG0330|consen 60 FKSFADLG------VHPELLEACQELGWKKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEP-K 128 (476)
T ss_pred hcchhhcC------cCHHHHHHHHHhCcCCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCC-C
Confidence 34566666 999999999999999999999999887665 999999999999999999999999999863 5
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
.++++||+|||+||.| +...++.+++..++++.+++||...
T Consensus 129 ~~~~lVLtPtRELA~Q---------------------------------------I~e~fe~Lg~~iglr~~~lvGG~~m 169 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQ---------------------------------------IAEQFEALGSGIGLRVAVLVGGMDM 169 (476)
T ss_pred CceEEEecCcHHHHHH---------------------------------------HHHHHHHhccccCeEEEEEecCchH
Confidence 5889999999999999 8889999999999999999999998
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+...+. ..|+|+|+||++|++++.+.+.+.+..++++|+||||++++..|.+.+..|
T Consensus 170 ~~q~~~L~---------------------kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~I 228 (476)
T KOG0330|consen 170 MLQANQLS---------------------KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYI 228 (476)
T ss_pred HHHHHHhh---------------------cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHH
Confidence 88876654 466999999999999999878899999999999999999999999999999
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 340 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (520)
++.++. ..|.+++|||.+..+..+....+.+|..+..+.. +
T Consensus 229 Lk~ip~--------------------------------------erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k-y 269 (476)
T KOG0330|consen 229 LKVIPR--------------------------------------ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK-Y 269 (476)
T ss_pred HHhcCc--------------------------------------cceEEEEEeecchhhHHHHhhccCCCeEEeccch-h
Confidence 998875 4478999999999999999999999988776654 4
Q ss_pred cCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH
Q 010028 341 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f 420 (520)
..-+.+.+.+...+...|..+|+.+++...++.+||||++...+..++-.|+..| +....+||.|+...|.-.++.|
T Consensus 270 ~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg---~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 270 QTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLG---FQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred cchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcC---cceecccchhhHHHHHHHHHHH
Confidence 5556677888888999999999999999999999999999999999999999877 8889999999999999999999
Q ss_pred HcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCCc
Q 010028 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 500 (520)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (520)
++|..+||+||++.++|+|+|.+++|||||+|.+..+|+||+||++|.|+.|++|.+++..|++.+.+|+..+.+ +.++
T Consensus 347 k~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gk-kl~~ 425 (476)
T KOG0330|consen 347 KAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGK-KLPE 425 (476)
T ss_pred hccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhc-CCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877766 6777
Q ss_pred ccCCchhhhhhhhc
Q 010028 501 HSIPSSLIESLRPV 514 (520)
Q Consensus 501 ~~~~~~~~~~~~~~ 514 (520)
.+++.+.+-.+..+
T Consensus 426 ~~~~~~~~~~l~er 439 (476)
T KOG0330|consen 426 YKVDKNEVMSLNER 439 (476)
T ss_pred cCcchHHHHHHHHH
Confidence 77777766655543
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-58 Score=457.58 Aligned_cols=372 Identities=32% Similarity=0.512 Sum_probs=335.6
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh-----ccccccEEEEcC
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLP 109 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~-----~~~~~~vlil~P 109 (520)
|+.+...++...||..|+|+|.+.|+-++. |+|++..|.||||||++|++|++.++... ..+++++|||+|
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~P 173 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAP 173 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcC
Confidence 889999999999999999999999876665 99999999999999999999999999862 235788999999
Q ss_pred CHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhh
Q 010028 110 TRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 189 (520)
Q Consensus 110 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 189 (520)
||+||.| +...+..++....++..|++||.+...|...
T Consensus 174 TRELA~Q---------------------------------------V~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~--- 211 (519)
T KOG0331|consen 174 TRELAVQ---------------------------------------VQAEAREFGKSLRLRSTCVYGGAPKGPQLRD--- 211 (519)
T ss_pred cHHHHHH---------------------------------------HHHHHHHHcCCCCccEEEEeCCCCccHHHHH---
Confidence 9999999 8888888888888999999999998888765
Q ss_pred cccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcc
Q 010028 190 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 269 (520)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~ 269 (520)
+.++.+|+|+||+++.+++.. +..+++.+.++|+||||.|++++|.+.++.|+..++.
T Consensus 212 ------------------l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~--- 269 (519)
T KOG0331|consen 212 ------------------LERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR--- 269 (519)
T ss_pred ------------------HhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCC---
Confidence 556889999999999999998 5688999999999999999999999999999999854
Q ss_pred cccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccc-cccCccccch
Q 010028 270 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLES 348 (520)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 348 (520)
+..|.+.+|||++..+..++..++.+|..+.+... .......+.+
T Consensus 270 ----------------------------------~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~q 315 (519)
T KOG0331|consen 270 ----------------------------------PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQ 315 (519)
T ss_pred ----------------------------------CcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhh
Confidence 23378999999999999999999999988888865 5566778888
Q ss_pred hhhhccCCCcHHHHHHHHHhc---CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCc
Q 010028 349 YKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425 (520)
Q Consensus 349 ~~~~~~~~~k~~~l~~~~~~~---~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~ 425 (520)
+...++...|...+..++... .++|+||||++...|..++..|+..+ +.+..+||+.++.+|+.+++.|++|+.
T Consensus 316 ive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~FreG~~ 392 (519)
T KOG0331|consen 316 IVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFREGKS 392 (519)
T ss_pred hhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC---cceeeecccccHHHHHHHHHhcccCCc
Confidence 888888888888888887765 57799999999999999999999865 889999999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCCcccCCc
Q 010028 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 505 (520)
Q Consensus 426 ~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (520)
.|||||+++++|+|+|++++||+||+|.+++.|+||+||+||.|+.|.+++|+...+.+....+++-+...+ +++++
T Consensus 393 ~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~---q~v~~ 469 (519)
T KOG0331|consen 393 PVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAG---QTVPP 469 (519)
T ss_pred ceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc---CCCCh
Confidence 999999999999999999999999999999999999999999999999999999999999999998887777 78888
Q ss_pred hhhhhhhhc
Q 010028 506 SLIESLRPV 514 (520)
Q Consensus 506 ~~~~~~~~~ 514 (520)
.+.+.-+..
T Consensus 470 ~l~~~~~~~ 478 (519)
T KOG0331|consen 470 DLLEYARVS 478 (519)
T ss_pred HHHHHHhhc
Confidence 887764443
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-56 Score=395.46 Aligned_cols=371 Identities=24% Similarity=0.428 Sum_probs=330.2
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
-+.+|+++. |+.++++.+...||..|+..|++|+..++. |+|++.+|..|+|||.+|-+.+++.+.-. .
T Consensus 25 v~~~F~~Mg------l~edlLrgiY~yGfekPS~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~-~ 93 (400)
T KOG0328|consen 25 VIPTFDDMG------LKEDLLRGIYAYGFEKPSAIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDIS-V 93 (400)
T ss_pred cccchhhcC------chHHHHHHHHHhccCCchHHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccc-c
Confidence 366788888 999999999999999999999999887776 99999999999999999999999877654 3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
+..++++++||++||.| +...+..++...++.+....||.+
T Consensus 94 r~tQ~lilsPTRELa~Q---------------------------------------i~~vi~alg~~mnvq~hacigg~n 134 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQ---------------------------------------IQKVILALGDYMNVQCHACIGGKN 134 (400)
T ss_pred ceeeEEEecChHHHHHH---------------------------------------HHHHHHHhcccccceEEEEecCCc
Confidence 55689999999999999 888899999999999999999988
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
..+.++. +..+.+++.|||++..+++.. +.+..+.++++|+||||.|++.++++++..
T Consensus 135 ~gedikk---------------------ld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiyd 192 (400)
T KOG0328|consen 135 LGEDIKK---------------------LDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYD 192 (400)
T ss_pred cchhhhh---------------------hcccceEeeCCCchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHH
Confidence 7777654 335779999999999999987 557788899999999999999999999999
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
+++.++. +.|++++|||++..+......+..+|+-+-...+.
T Consensus 193 iyr~lp~--------------------------------------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde 234 (400)
T KOG0328|consen 193 IYRYLPP--------------------------------------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE 234 (400)
T ss_pred HHHhCCC--------------------------------------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC
Confidence 9998765 56899999999999999999999999877666555
Q ss_pred ccCccccchhhhhccCC-CcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHH
Q 010028 340 YKLPERLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 418 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~~-~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~ 418 (520)
.. .+.+.++++.++.+ +|++.|..+...+.-.+++||||++..+.++.+.+++.. +.|...||+|..++|+++++
T Consensus 235 lt-lEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~n---ftVssmHGDm~qkERd~im~ 310 (400)
T KOG0328|consen 235 LT-LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN---FTVSSMHGDMEQKERDKIMN 310 (400)
T ss_pred Cc-hhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhC---ceeeeccCCcchhHHHHHHH
Confidence 33 34577777776654 599999999999888899999999999999999999755 89999999999999999999
Q ss_pred HHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCC
Q 010028 419 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 498 (520)
Q Consensus 419 ~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 498 (520)
+|++|+.+||++|++.++|+|+|.+++||+||+|.+...|+||+||.||.|+.|.++.|+..+|.+.++.+.+.+.-+-
T Consensus 311 dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i- 389 (400)
T KOG0328|consen 311 DFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI- 389 (400)
T ss_pred HhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877543
Q ss_pred CcccCCchh
Q 010028 499 PIHSIPSSL 507 (520)
Q Consensus 499 ~~~~~~~~~ 507 (520)
.++|.+.
T Consensus 390 --~emp~nv 396 (400)
T KOG0328|consen 390 --DEMPMNV 396 (400)
T ss_pred --ccccchh
Confidence 4455543
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.1e-55 Score=456.68 Aligned_cols=382 Identities=27% Similarity=0.436 Sum_probs=320.7
Q ss_pred CccCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHH
Q 010028 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (520)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~ 93 (520)
-...|..+.+|++++ +++.+.+++.++||..|+++|.++|+.++. |+|++++||||||||++|++|++.+
T Consensus 122 g~~~p~p~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~ 191 (545)
T PTZ00110 122 GENVPKPVVSFEYTS------FPDYILKSLKNAGFTEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVH 191 (545)
T ss_pred CCCCCcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHH
Confidence 345677788899887 899999999999999999999999998876 9999999999999999999999988
Q ss_pred Hhhhc----cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccc
Q 010028 94 LSNRA----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGL 169 (520)
Q Consensus 94 l~~~~----~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (520)
+.... ..++.+|||+||++||.| +...+..++...++
T Consensus 192 i~~~~~~~~~~gp~~LIL~PTreLa~Q---------------------------------------i~~~~~~~~~~~~i 232 (545)
T PTZ00110 192 INAQPLLRYGDGPIVLVLAPTRELAEQ---------------------------------------IREQCNKFGASSKI 232 (545)
T ss_pred HHhcccccCCCCcEEEEECChHHHHHH---------------------------------------HHHHHHHHhcccCc
Confidence 76431 235789999999999999 55556666666688
Q ss_pred eEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHH
Q 010028 170 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249 (520)
Q Consensus 170 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~ 249 (520)
++.+.+|+.+...+... +..+++|+|+||++|.+++.. ....+.++++||+||||+++
T Consensus 233 ~~~~~~gg~~~~~q~~~---------------------l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~ml 290 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYA---------------------LRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEADRML 290 (545)
T ss_pred cEEEEeCCCCHHHHHHH---------------------HHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhh
Confidence 88999999876655443 345789999999999999986 44678999999999999999
Q ss_pred HHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccC-
Q 010028 250 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH- 328 (520)
Q Consensus 250 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~- 328 (520)
+.++...+..++..+.. ..|++++|||++.....+....+.
T Consensus 291 d~gf~~~i~~il~~~~~--------------------------------------~~q~l~~SAT~p~~v~~l~~~l~~~ 332 (545)
T PTZ00110 291 DMGFEPQIRKIVSQIRP--------------------------------------DRQTLMWSATWPKEVQSLARDLCKE 332 (545)
T ss_pred hcchHHHHHHHHHhCCC--------------------------------------CCeEEEEEeCCCHHHHHHHHHHhcc
Confidence 99998888888876543 347899999998877777766654
Q ss_pred CceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEecc
Q 010028 329 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 406 (520)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~ 406 (520)
.+..+............+.+.........|...+..++... .+.++||||++++.|+.+++.|+..+ +.+..+||
T Consensus 333 ~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g---~~~~~ihg 409 (545)
T PTZ00110 333 EPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDG---WPALCIHG 409 (545)
T ss_pred CCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC---CcEEEEEC
Confidence 45555444332233344555555555666777777777765 57799999999999999999998765 78899999
Q ss_pred ccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHH
Q 010028 407 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486 (520)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~ 486 (520)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+.+++...+
T Consensus 410 ~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~ 489 (545)
T PTZ00110 410 DKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLA 489 (545)
T ss_pred CCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccCCchhhhh
Q 010028 487 KKLLQKADNDSCPIHSIPSSLIES 510 (520)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~ 510 (520)
+.+++.+...+ .++|+++.+.
T Consensus 490 ~~l~~~l~~~~---q~vp~~l~~~ 510 (545)
T PTZ00110 490 RDLVKVLREAK---QPVPPELEKL 510 (545)
T ss_pred HHHHHHHHHcc---CCCCHHHHHH
Confidence 99988888776 7788777664
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-54 Score=444.06 Aligned_cols=378 Identities=27% Similarity=0.424 Sum_probs=312.1
Q ss_pred CCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
++....+|++++ |++.+.+++..+||..|+++|.+||+.++. |+|++++||||||||++|++|+++.+..
T Consensus 3 ~~~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~ 72 (423)
T PRK04837 3 THLTEQKFSDFA------LHPQVVEALEKKGFHNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLS 72 (423)
T ss_pred ccCCCCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHh
Confidence 344556788888 999999999999999999999999998776 9999999999999999999999998865
Q ss_pred hc------cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccce
Q 010028 97 RA------VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS 170 (520)
Q Consensus 97 ~~------~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (520)
.. ..++++|||+||++||.| +.+.+..+....+++
T Consensus 73 ~~~~~~~~~~~~~~lil~PtreLa~Q---------------------------------------i~~~~~~l~~~~~~~ 113 (423)
T PRK04837 73 HPAPEDRKVNQPRALIMAPTRELAVQ---------------------------------------IHADAEPLAQATGLK 113 (423)
T ss_pred cccccccccCCceEEEECCcHHHHHH---------------------------------------HHHHHHHHhccCCce
Confidence 32 124689999999999999 555666666667899
Q ss_pred EEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH
Q 010028 171 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 171 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 250 (520)
+..++|+.....+... +..+++|+|+||+++.+++.. +.+.+++++++|+||||++++
T Consensus 114 v~~~~gg~~~~~~~~~---------------------l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~ 171 (423)
T PRK04837 114 LGLAYGGDGYDKQLKV---------------------LESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFD 171 (423)
T ss_pred EEEEECCCCHHHHHHH---------------------hcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEecHHHHhh
Confidence 9999998776555433 335679999999999999876 457789999999999999999
Q ss_pred HHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCc
Q 010028 251 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 330 (520)
Q Consensus 251 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~ 330 (520)
.++...+..++..++.. ...+.+++|||++.....+....+.+|
T Consensus 172 ~~f~~~i~~i~~~~~~~------------------------------------~~~~~~l~SAT~~~~~~~~~~~~~~~p 215 (423)
T PRK04837 172 LGFIKDIRWLFRRMPPA------------------------------------NQRLNMLFSATLSYRVRELAFEHMNNP 215 (423)
T ss_pred cccHHHHHHHHHhCCCc------------------------------------cceeEEEEeccCCHHHHHHHHHHCCCC
Confidence 88888888887765431 123468999999888777777777788
Q ss_pred eeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCH
Q 010028 331 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410 (520)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~ 410 (520)
..+...... .....+.+.........+...+..++.....+++||||+++..|+.+++.|...+ +.+..+||+++.
T Consensus 216 ~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g---~~v~~lhg~~~~ 291 (423)
T PRK04837 216 EYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADG---HRVGLLTGDVAQ 291 (423)
T ss_pred EEEEEcCCC-cCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCC---CcEEEecCCCCh
Confidence 776654433 2223334433444445677778888877777899999999999999999998765 889999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHH
Q 010028 411 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 490 (520)
Q Consensus 411 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~ 490 (520)
.+|.++++.|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+.+.+...+..+.
T Consensus 292 ~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~ 371 (423)
T PRK04837 292 KKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIE 371 (423)
T ss_pred hHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HHhcCCCCCcccCCch
Q 010028 491 QKADNDSCPIHSIPSS 506 (520)
Q Consensus 491 ~~~~~~~~~~~~~~~~ 506 (520)
+.+.. ..++.+++.+
T Consensus 372 ~~~~~-~~~~~~~~~~ 386 (423)
T PRK04837 372 TYIGH-SIPVSKYDSD 386 (423)
T ss_pred HHhCC-CCCCccCChh
Confidence 65544 4444445444
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-54 Score=445.82 Aligned_cols=363 Identities=31% Similarity=0.522 Sum_probs=322.9
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~ 101 (520)
..|++++ |++.+.+++.+.||..|+|+|.++|+.++. |+|++..|+||||||.+|++|+++++.......
T Consensus 29 ~~F~~l~------l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~ 98 (513)
T COG0513 29 PEFASLG------LSPELLQALKDLGFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERK 98 (513)
T ss_pred CCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccC
Confidence 5688888 999999999999999999999999998876 899999999999999999999999976321122
Q ss_pred cc-EEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-cceEEeccCccc
Q 010028 102 LR-ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSS 179 (520)
Q Consensus 102 ~~-vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~~ 179 (520)
.. +||++||++||.| +.+.+..++... ++++.+++||.+
T Consensus 99 ~~~aLil~PTRELA~Q---------------------------------------i~~~~~~~~~~~~~~~~~~i~GG~~ 139 (513)
T COG0513 99 YVSALILAPTRELAVQ---------------------------------------IAEELRKLGKNLGGLRVAVVYGGVS 139 (513)
T ss_pred CCceEEECCCHHHHHH---------------------------------------HHHHHHHHHhhcCCccEEEEECCCC
Confidence 22 9999999999999 666677777766 788999999999
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
...+...+ ..+++|+|+||+++++++... .++++.+.++|+||||.|++.+|.+.+..
T Consensus 140 ~~~q~~~l---------------------~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrmLd~Gf~~~i~~ 197 (513)
T COG0513 140 IRKQIEAL---------------------KRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEK 197 (513)
T ss_pred HHHHHHHH---------------------hcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhhhcCCCHHHHHH
Confidence 88886543 336899999999999999985 68899999999999999999999999999
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
|+..++. ..|++++|||++..+..+.+.++.+|..+......
T Consensus 198 I~~~~p~--------------------------------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~ 239 (513)
T COG0513 198 ILKALPP--------------------------------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK 239 (513)
T ss_pred HHHhCCc--------------------------------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc
Confidence 9998764 34789999999998888999999999877776332
Q ss_pred -ccCccccchhhhhccCCC-cHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHH
Q 010028 340 -YKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 417 (520)
Q Consensus 340 -~~~~~~~~~~~~~~~~~~-k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~ 417 (520)
......+.+++..+.... |...|..++......++||||++...+..++..|...+ +.+..+||++++.+|.+.+
T Consensus 240 ~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g---~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 240 LERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG---FKVAALHGDLPQEERDRAL 316 (513)
T ss_pred ccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC---CeEEEecCCCCHHHHHHHH
Confidence 235677888888888765 99999999998888899999999999999999999877 8999999999999999999
Q ss_pred HHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecc-hHHHHHHHHHHhcCC
Q 010028 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADND 496 (520)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~~~~~~~~~~~~~~~ 496 (520)
+.|++|+.+|||||+++++|+|+|++++||+||+|.+.+.|+||+||+||.|+.|.+++|+.+. +...+.++.+.+.+.
T Consensus 317 ~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 317 EKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred HHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999986 899999998877654
No 7
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.7e-54 Score=445.98 Aligned_cols=377 Identities=26% Similarity=0.457 Sum_probs=314.9
Q ss_pred CCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
.|..+.+|++++ |++.+.+.+...||..|+|+|.+||+.++. |+|++++||||||||++|++|++.++..
T Consensus 116 ~p~pi~~f~~~~------l~~~l~~~L~~~g~~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~ 185 (518)
T PLN00206 116 VPPPILSFSSCG------LPPKLLLNLETAGYEFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCT 185 (518)
T ss_pred CCchhcCHHhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHh
Confidence 456677788887 899999999999999999999999998875 8999999999999999999999988753
Q ss_pred h------ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccce
Q 010028 97 R------AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS 170 (520)
Q Consensus 97 ~------~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (520)
. ...++++||++||++||.| +...+..+....+++
T Consensus 186 ~~~~~~~~~~~~~aLIL~PTreLa~Q---------------------------------------i~~~~~~l~~~~~~~ 226 (518)
T PLN00206 186 IRSGHPSEQRNPLAMVLTPTRELCVQ---------------------------------------VEDQAKVLGKGLPFK 226 (518)
T ss_pred hccccccccCCceEEEEeCCHHHHHH---------------------------------------HHHHHHHHhCCCCce
Confidence 2 1246789999999999999 555666666666788
Q ss_pred EEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH
Q 010028 171 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 171 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 250 (520)
+.+++||.....+... +..+++|+|+||++|.+++... ...++++++||+||||+|++
T Consensus 227 ~~~~~gG~~~~~q~~~---------------------l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViDEad~ml~ 284 (518)
T PLN00206 227 TALVVGGDAMPQQLYR---------------------IQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLDEVDCMLE 284 (518)
T ss_pred EEEEECCcchHHHHHH---------------------hcCCCCEEEECHHHHHHHHHcC-CccchheeEEEeecHHHHhh
Confidence 8888888776655433 3456899999999999998874 57789999999999999999
Q ss_pred HHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCc
Q 010028 251 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 330 (520)
Q Consensus 251 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~ 330 (520)
.+|...+..++..++ ..|++++|||++..+..+......++
T Consensus 285 ~gf~~~i~~i~~~l~---------------------------------------~~q~l~~SATl~~~v~~l~~~~~~~~ 325 (518)
T PLN00206 285 RGFRDQVMQIFQALS---------------------------------------QPQVLLFSATVSPEVEKFASSLAKDI 325 (518)
T ss_pred cchHHHHHHHHHhCC---------------------------------------CCcEEEEEeeCCHHHHHHHHHhCCCC
Confidence 988888877776542 24789999999988888888777777
Q ss_pred eeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEecccc
Q 010028 331 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 408 (520)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~ 408 (520)
..+...... .....+.+.........+...+..++... ...++||||+++..++.+++.|... .++.+..+||++
T Consensus 326 ~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~ 402 (518)
T PLN00206 326 ILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEK 402 (518)
T ss_pred EEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCC
Confidence 776655432 22233444444555556666777777654 2468999999999999999999752 247889999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHH
Q 010028 409 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 488 (520)
Q Consensus 409 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~ 488 (520)
+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+..+|+||+||+||.|..|.+++|+..++...+..
T Consensus 403 ~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 403 SMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccCCchhhh
Q 010028 489 LLQKADNDSCPIHSIPSSLIE 509 (520)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~ 509 (520)
+++.+...+ ..+|+++.+
T Consensus 483 l~~~l~~~~---~~vp~~l~~ 500 (518)
T PLN00206 483 LVALLKSSG---AAIPRELAN 500 (518)
T ss_pred HHHHHHHcC---CCCCHHHHh
Confidence 999888776 677877765
No 8
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-53 Score=446.80 Aligned_cols=385 Identities=26% Similarity=0.416 Sum_probs=316.4
Q ss_pred CCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
+|....+|++++ |++.+.++|.++||..|+++|.++|+.+++ ++|++++||||||||++|++|+++++..
T Consensus 4 ~~~~~~~f~~l~------l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~ 73 (572)
T PRK04537 4 KPLTDLTFSSFD------LHPALLAGLESAGFTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLS 73 (572)
T ss_pred CccCCCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 343334688888 999999999999999999999999998876 9999999999999999999999998864
Q ss_pred hc------cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccce
Q 010028 97 RA------VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS 170 (520)
Q Consensus 97 ~~------~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (520)
.. ...+++|||+||++|+.| +...+..+....+++
T Consensus 74 ~~~~~~~~~~~~raLIl~PTreLa~Q---------------------------------------i~~~~~~l~~~~~i~ 114 (572)
T PRK04537 74 RPALADRKPEDPRALILAPTRELAIQ---------------------------------------IHKDAVKFGADLGLR 114 (572)
T ss_pred cccccccccCCceEEEEeCcHHHHHH---------------------------------------HHHHHHHHhccCCce
Confidence 31 124689999999999999 555566666667899
Q ss_pred EEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH
Q 010028 171 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 171 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 250 (520)
+..++|+.....+... +..+++|+|+||++|.+++...+.+.+..+++|||||||++++
T Consensus 115 v~~l~Gg~~~~~q~~~---------------------l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld 173 (572)
T PRK04537 115 FALVYGGVDYDKQREL---------------------LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD 173 (572)
T ss_pred EEEEECCCCHHHHHHH---------------------HhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhh
Confidence 9999999876655433 3346799999999999998875557788999999999999999
Q ss_pred HHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCc
Q 010028 251 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 330 (520)
Q Consensus 251 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~ 330 (520)
.++...+..++..++.. ...|++++|||++..+..+....+..|
T Consensus 174 ~gf~~~i~~il~~lp~~------------------------------------~~~q~ll~SATl~~~v~~l~~~~l~~p 217 (572)
T PRK04537 174 LGFIKDIRFLLRRMPER------------------------------------GTRQTLLFSATLSHRVLELAYEHMNEP 217 (572)
T ss_pred cchHHHHHHHHHhcccc------------------------------------cCceEEEEeCCccHHHHHHHHHHhcCC
Confidence 88888888888765431 134789999999888777777777776
Q ss_pred eeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCH
Q 010028 331 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410 (520)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~ 410 (520)
..+...... .....+.+.........+...+..++....+.++||||+++..++.+++.|...+ +.+..+||+|+.
T Consensus 218 ~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g---~~v~~lhg~l~~ 293 (572)
T PRK04537 218 EKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG---YRVGVLSGDVPQ 293 (572)
T ss_pred cEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC---CCEEEEeCCCCH
Confidence 544433322 1233344444455556677788888887778899999999999999999998765 889999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHH
Q 010028 411 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 490 (520)
Q Consensus 411 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~ 490 (520)
.+|.++++.|++|+.+|||||+++++|||+|++++||+|+.|.+...|+||+||+||.|+.|.+++|+...+...+..+.
T Consensus 294 ~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~ 373 (572)
T PRK04537 294 KKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE 373 (572)
T ss_pred HHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888886
Q ss_pred HHhcCCCCCcccCCchhhhhhh
Q 010028 491 QKADNDSCPIHSIPSSLIESLR 512 (520)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~ 512 (520)
+.+. ...+..++..+.+..+.
T Consensus 374 ~~~~-~~~~~~~~~~~~~~~~~ 394 (572)
T PRK04537 374 AYIE-QKIPVEPVTAELLTPLP 394 (572)
T ss_pred HHHc-CCCCccccChhhccccc
Confidence 6554 44455555555554443
No 9
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-54 Score=410.47 Aligned_cols=438 Identities=44% Similarity=0.686 Sum_probs=365.0
Q ss_pred cc-CccCCccccc-----ccCCCCCCC----CCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCC-----CCCCEEEEC
Q 010028 12 LP-WMRSPVDVSL-----FEDCPLDHL----PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL-----FERDLCINS 76 (520)
Q Consensus 12 ~~-~~~~~~~~~~-----~~~~~~~~~----~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~-----~~~~~li~a 76 (520)
+| |-..|+-+.. |+.++.... +.|...+...+.++++.+..|.|..+++.++..+. ..+|++|.|
T Consensus 111 lp~wva~p~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~A 190 (620)
T KOG0350|consen 111 LPGWVAIPETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNA 190 (620)
T ss_pred CcccccCceecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEec
Confidence 44 8888886655 444442221 12334455668889999999999999888755332 368999999
Q ss_pred CCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhh
Q 010028 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQV 156 (520)
Q Consensus 77 pTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (520)
|||||||++|.+|+++.+.....+..|++|++|+++|+.| +
T Consensus 191 pTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q---------------------------------------V 231 (620)
T KOG0350|consen 191 PTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ---------------------------------------V 231 (620)
T ss_pred CCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH---------------------------------------H
Confidence 9999999999999999998876677899999999999999 8
Q ss_pred HHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCccccc
Q 010028 157 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 236 (520)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~ 236 (520)
.+.+..+++..++.|+.+.|..+...+..++...+ -....||+|+||++|.+++.+.+.+++++
T Consensus 232 ~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~----------------~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 232 YDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDP----------------PECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred HHHHHHhccCCceEEEecccccchHHHHHHHhcCC----------------CccccceEEcCchHHHHhccCCCCcchhh
Confidence 88888999999999999999999999988876533 11245999999999999999888899999
Q ss_pred ccEEEeehHHHHHHHHhhhhHHHHHHhhccC-----cccccccccccccccccchhhhcccccccCCCCCCccchheeee
Q 010028 237 LCYLVVDETDRLLREAYQAWLPTVLQLTRSD-----NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 311 (520)
Q Consensus 237 ~~~lViDEah~l~~~~~~~~l~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 311 (520)
++++||||||+|++..|.+|+..++.++... ..+.+.....+.+..+..+.... ...+++...+++
T Consensus 296 LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~---------~~~~~~l~kL~~ 366 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKL---------GKLYPPLWKLVF 366 (620)
T ss_pred ceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhc---------CCcCchhHhhhc
Confidence 9999999999999999999999999998875 23333333333333333222221 223455667999
Q ss_pred cccccCCchhhhhcccCCceeeecc---cccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHH
Q 010028 312 SATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 388 (520)
Q Consensus 312 SaT~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~ 388 (520)
|||+......+....+..|....+. ...+.+|..+.++...++...+...+..++......++|+|+++.+.+.+++
T Consensus 367 satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~ 446 (620)
T KOG0350|consen 367 SATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLA 446 (620)
T ss_pred chhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHH
Confidence 9999999999999999999666555 3567889999999999998899999999999999999999999999999999
Q ss_pred HHHh-hcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhccc
Q 010028 389 TLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 467 (520)
Q Consensus 389 ~~L~-~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R 467 (520)
..|+ .++....++..+.|.++.+.|.+.++.|++|++++|||++++++|+|+.+++.||+||+|.+...|+||+||++|
T Consensus 447 ~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTAR 526 (620)
T KOG0350|consen 447 HVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTAR 526 (620)
T ss_pred HHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccc
Confidence 9998 666777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHHhcC-CCCCcccCCchhhhhhhh
Q 010028 468 AGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIESLRP 513 (520)
Q Consensus 468 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 513 (520)
.|+.|.++++.++.+...|.+++++.+. .++++++++..-+.....
T Consensus 527 Agq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~~e~~~~~~~~~ 573 (620)
T KOG0350|consen 527 AGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQPIEYIFIKDEDD 573 (620)
T ss_pred ccCCceEEEeeccccchHHHHHHHHhcccCCcceeecCchHHHHHHH
Confidence 9999999999999999999999999987 777777776655554443
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-54 Score=409.32 Aligned_cols=382 Identities=34% Similarity=0.557 Sum_probs=332.8
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc--
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-- 99 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~-- 99 (520)
.+|.++. |+-.+++++..+||..|+|+|..+|+-.+- |+|++-+|.||||||.+|++|++.+++-.+.
T Consensus 181 ~sF~~mN------LSRPlLka~~~lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~ 250 (691)
T KOG0338|consen 181 ESFQSMN------LSRPLLKACSTLGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKV 250 (691)
T ss_pred hhHHhcc------cchHHHHHHHhcCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccC
Confidence 4677777 999999999999999999999999876554 9999999999999999999999999976432
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
..-|||||+||++|+-| +..+..++++..++.+++.+||.+
T Consensus 251 ~~TRVLVL~PTRELaiQ---------------------------------------v~sV~~qlaqFt~I~~~L~vGGL~ 291 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQ---------------------------------------VHSVTKQLAQFTDITVGLAVGGLD 291 (691)
T ss_pred cceeEEEEeccHHHHHH---------------------------------------HHHHHHHHHhhccceeeeeecCcc
Confidence 34579999999999999 777888888888999999999999
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
...+-..+ +..|||+|+||++|.+++.+-..+++.++.++|+||||+|++.+|.+.+.+
T Consensus 292 lk~QE~~L---------------------Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnE 350 (691)
T KOG0338|consen 292 LKAQEAVL---------------------RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNE 350 (691)
T ss_pred HHHHHHHH---------------------hhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHH
Confidence 88886554 457799999999999999987889999999999999999999999999999
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
|+.+++. .+|.++||||.+..+..+....+.+|+-+.+.+..
T Consensus 351 ii~lcpk--------------------------------------~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~ 392 (691)
T KOG0338|consen 351 IIRLCPK--------------------------------------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK 392 (691)
T ss_pred HHHhccc--------------------------------------cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc
Confidence 9999876 44789999999999999999999999988877765
Q ss_pred ccCccccchhhhhcc---CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHH
Q 010028 340 YKLPERLESYKLICE---SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 416 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~---~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~ 416 (520)
..+..+.+-++... ...+...+..++...-..+++||+.+.+.|.++.=.|--.| .++..+||.+++.+|.+.
T Consensus 393 -~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlg---l~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 393 -DTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLG---LKAGELHGSLTQEQRLES 468 (691)
T ss_pred -ccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhh---chhhhhcccccHHHHHHH
Confidence 33444454444332 34466677777777777899999999999999988887555 899999999999999999
Q ss_pred HHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCC
Q 010028 417 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 496 (520)
Q Consensus 417 ~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 496 (520)
++.|++++++|||||++.++|+|++++..||||..|.+...|+||+||+.|.|+.|.+++|+-.+|.+.++.+++.-...
T Consensus 469 L~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a 548 (691)
T KOG0338|consen 469 LEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKA 548 (691)
T ss_pred HHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999885333
Q ss_pred --CCCcccCCchhhhhhhhcc
Q 010028 497 --SCPIHSIPSSLIESLRPVY 515 (520)
Q Consensus 497 --~~~~~~~~~~~~~~~~~~~ 515 (520)
++.-.-+|++.++.++..+
T Consensus 549 ~~klk~R~i~~~~Iek~~~~i 569 (691)
T KOG0338|consen 549 GSKLKNRNIPPEVIEKFRKKI 569 (691)
T ss_pred ccchhhcCCCHHHHHHHHHHH
Confidence 3333557888888877654
No 11
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.8e-53 Score=436.89 Aligned_cols=359 Identities=27% Similarity=0.419 Sum_probs=307.8
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~ 101 (520)
.+|++++ |++.+.+++..+||..|+|+|.+||+.++. ++|++++||||||||++|++|+++++... ...
T Consensus 4 ~~f~~l~------l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~-~~~ 72 (460)
T PRK11776 4 TAFSTLP------LPPALLANLNELGYTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVK-RFR 72 (460)
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhc-cCC
Confidence 4688888 999999999999999999999999998876 89999999999999999999999988643 245
Q ss_pred ccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc-ccceEEeccCccch
Q 010028 102 LRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQSSI 180 (520)
Q Consensus 102 ~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~~~~ 180 (520)
.++||++||++|+.|++++ +..+... .++++..++|+.+.
T Consensus 73 ~~~lil~PtreLa~Q~~~~---------------------------------------~~~~~~~~~~~~v~~~~Gg~~~ 113 (460)
T PRK11776 73 VQALVLCPTRELADQVAKE---------------------------------------IRRLARFIPNIKVLTLCGGVPM 113 (460)
T ss_pred ceEEEEeCCHHHHHHHHHH---------------------------------------HHHHHhhCCCcEEEEEECCCCh
Confidence 6899999999999995444 4433332 26888899999887
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+... +..+++|+|+||+++.+++.+ +...++++++||+||||++++.++...+..+
T Consensus 114 ~~~~~~---------------------l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~l~~g~~~~l~~i 171 (460)
T PRK11776 114 GPQIDS---------------------LEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAI 171 (460)
T ss_pred HHHHHH---------------------hcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHHhCcCcHHHHHHH
Confidence 666544 335779999999999999886 4577899999999999999999888888888
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 340 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (520)
+..++. ..|++++|||++.....+...++.+|..+......
T Consensus 172 ~~~~~~--------------------------------------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~- 212 (460)
T PRK11776 172 IRQAPA--------------------------------------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH- 212 (460)
T ss_pred HHhCCc--------------------------------------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-
Confidence 877654 34789999999988888888888888776655432
Q ss_pred cCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH
Q 010028 341 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f 420 (520)
....+.+.+.......+.+.+..++.....+++||||+++..++.+++.|...+ +.+..+||++++.+|+.+++.|
T Consensus 213 -~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~---~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 213 -DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQG---FSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred -CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHH
Confidence 233355656666666688888888888888899999999999999999999876 8899999999999999999999
Q ss_pred HcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.+++|+.+.|...++.+.+.+..
T Consensus 289 ~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 289 ANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred HcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888766553
No 12
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-53 Score=402.02 Aligned_cols=362 Identities=32% Similarity=0.503 Sum_probs=314.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc--c
Q 010028 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--R 100 (520)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~--~ 100 (520)
.|++++.+ |+++++.++..+||...||.|..+|+.++. ++|+++.|+||||||++|++|++..+..... +
T Consensus 5 ~~~~l~~~----L~~~l~~~l~~~GF~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~ 76 (567)
T KOG0345|consen 5 SFSSLAPP----LSPWLLEALDESGFEKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP 76 (567)
T ss_pred chhhcCCC----ccHHHHHHHHhcCCcccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC
Confidence 45666532 889999999999999999999999988776 9999999999999999999999998844321 2
Q ss_pred c--ccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc-ccceEEeccCc
Q 010028 101 C--LRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQ 177 (520)
Q Consensus 101 ~--~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~ 177 (520)
. .-+||++||++|+.|+.+. ...+... ..+++.+++||
T Consensus 77 ~~~vgalIIsPTRELa~QI~~V---------------------------------------~~~F~~~l~~l~~~l~vGG 117 (567)
T KOG0345|consen 77 PGQVGALIISPTRELARQIREV---------------------------------------AQPFLEHLPNLNCELLVGG 117 (567)
T ss_pred ccceeEEEecCcHHHHHHHHHH---------------------------------------HHHHHHhhhccceEEEecC
Confidence 2 3589999999999995444 3333322 57899999999
Q ss_pred cchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcC-CCcccccccEEEeehHHHHHHHHhhhh
Q 010028 178 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-RGFTLEHLCYLVVDETDRLLREAYQAW 256 (520)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~l~~~~~~~~ 256 (520)
.+..+.+..+.. .+++|+||||++|.+++.+. ..+++.+++++|+||||++++.+|...
T Consensus 118 ~~v~~Di~~fke--------------------e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~ 177 (567)
T KOG0345|consen 118 RSVEEDIKTFKE--------------------EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEAS 177 (567)
T ss_pred ccHHHHHHHHHH--------------------hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHH
Confidence 988888777543 67899999999999999873 335677999999999999999999999
Q ss_pred HHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecc
Q 010028 257 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 336 (520)
Q Consensus 257 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~ 336 (520)
++.|+..++..+ +.-++|||.....+.+...++.+|+.+...
T Consensus 178 ~n~ILs~LPKQR--------------------------------------RTGLFSATq~~~v~dL~raGLRNpv~V~V~ 219 (567)
T KOG0345|consen 178 VNTILSFLPKQR--------------------------------------RTGLFSATQTQEVEDLARAGLRNPVRVSVK 219 (567)
T ss_pred HHHHHHhccccc--------------------------------------ccccccchhhHHHHHHHHhhccCceeeeec
Confidence 999999988743 568899999999999999999999988777
Q ss_pred cccc-cCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHH
Q 010028 337 ETRY-KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 415 (520)
Q Consensus 337 ~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~ 415 (520)
.... ..|..+..++..++...|...+++++.+...+++|||++|...++.+...|... .....+..+||.|..+.|..
T Consensus 220 ~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~-l~~~~i~~iHGK~~q~~R~k 298 (567)
T KOG0345|consen 220 EKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL-LKKREIFSIHGKMSQKARAK 298 (567)
T ss_pred ccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH-hCCCcEEEecchhcchhHHH
Confidence 6542 367788889999999999999999999999999999999999999999998876 34568889999999999999
Q ss_pred HHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHH
Q 010028 416 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491 (520)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~ 491 (520)
+++.|++....+|+||+++++|+|+|+++.||++|+|.+++.|+||+||++|.|+.|.+++|+.++ ...|-.+++
T Consensus 299 ~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~-E~aYveFl~ 373 (567)
T KOG0345|consen 299 VLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR-EEAYVEFLR 373 (567)
T ss_pred HHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEeccc-HHHHHHHHH
Confidence 999999988899999999999999999999999999999999999999999999999999999994 444555544
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8e-53 Score=433.31 Aligned_cols=360 Identities=31% Similarity=0.482 Sum_probs=301.3
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc----
Q 010028 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---- 98 (520)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~---- 98 (520)
+|++++ |++.+.+++.++||..|+++|.+||+.++. ++|++++||||+|||++|++|+++.+....
T Consensus 2 ~f~~l~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~ 71 (456)
T PRK10590 2 SFDSLG------LSPDILRAVAEQGYREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71 (456)
T ss_pred CHHHcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccc
Confidence 577777 999999999999999999999999998776 899999999999999999999999886532
Q ss_pred -cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCc
Q 010028 99 -VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQ 177 (520)
Q Consensus 99 -~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 177 (520)
....++|||+||++||.| +.+.+..+....++++..++|+
T Consensus 72 ~~~~~~aLil~PtreLa~Q---------------------------------------i~~~~~~~~~~~~~~~~~~~gg 112 (456)
T PRK10590 72 GRRPVRALILTPTRELAAQ---------------------------------------IGENVRDYSKYLNIRSLVVFGG 112 (456)
T ss_pred cCCCceEEEEeCcHHHHHH---------------------------------------HHHHHHHHhccCCCEEEEEECC
Confidence 123479999999999999 4445555555667888888998
Q ss_pred cchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhH
Q 010028 178 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 257 (520)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l 257 (520)
.+...+... +...++|+|+||++|.+++.. ....++.+++|||||||++++.++...+
T Consensus 113 ~~~~~~~~~---------------------l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ll~~~~~~~i 170 (456)
T PRK10590 113 VSINPQMMK---------------------LRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEADRMLDMGFIHDI 170 (456)
T ss_pred cCHHHHHHH---------------------HcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHHHHhccccHHHH
Confidence 876665433 335679999999999998876 4467899999999999999998887778
Q ss_pred HHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccc
Q 010028 258 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 337 (520)
Q Consensus 258 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~ 337 (520)
..++..+.. ..|.+++|||++.....+....+.+|..+....
T Consensus 171 ~~il~~l~~--------------------------------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 212 (456)
T PRK10590 171 RRVLAKLPA--------------------------------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR 212 (456)
T ss_pred HHHHHhCCc--------------------------------------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec
Confidence 877766543 346899999998877788777777777665543
Q ss_pred ccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHH
Q 010028 338 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 417 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~ 417 (520)
.. .....+.+.....+...+.+.+..++......++||||+++..++.+++.|...+ +.+..+||+++..+|.+++
T Consensus 213 ~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 213 RN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRAL 288 (456)
T ss_pred cc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC---CCEEEEECCCCHHHHHHHH
Confidence 32 2233444444445555566777777777777899999999999999999998765 7889999999999999999
Q ss_pred HHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
+.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|..|.+++|+..+|...++.+.+.+..
T Consensus 289 ~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 289 ADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred HHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776554
No 14
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.7e-52 Score=428.77 Aligned_cols=359 Identities=30% Similarity=0.454 Sum_probs=298.7
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc---c
Q 010028 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---V 99 (520)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~---~ 99 (520)
+|++++ |++.+.+++.++||..|+++|.++|+.++. ++|++++||||+|||++|++|+++.+.... .
T Consensus 2 ~f~~l~------l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~ 71 (434)
T PRK11192 2 TFSELE------LDESLLEALQDKGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKS 71 (434)
T ss_pred CHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 577777 999999999999999999999999998876 899999999999999999999999886532 1
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
...++||++||++|+.| +.+.+..+....++.+..++|+..
T Consensus 72 ~~~~~lil~Pt~eLa~Q---------------------------------------~~~~~~~l~~~~~~~v~~~~gg~~ 112 (434)
T PRK11192 72 GPPRILILTPTRELAMQ---------------------------------------VADQARELAKHTHLDIATITGGVA 112 (434)
T ss_pred CCceEEEECCcHHHHHH---------------------------------------HHHHHHHHHccCCcEEEEEECCCC
Confidence 34689999999999999 666666666677889999999987
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
...+... +..+++|+|+||++|.+.+.. ..+.+..+++|||||||++++.++...+..
T Consensus 113 ~~~~~~~---------------------l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 113 YMNHAEV---------------------FSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred HHHHHHH---------------------hcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 6655433 335679999999999998876 457788999999999999998888888877
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccC-CchhhhhcccCCceeeecccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGET 338 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~l~~~~~~~~~~~ 338 (520)
+...... ..|++++|||+.. ....+....+.+|..+.....
T Consensus 171 i~~~~~~--------------------------------------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~ 212 (434)
T PRK11192 171 IAAETRW--------------------------------------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS 212 (434)
T ss_pred HHHhCcc--------------------------------------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC
Confidence 7665432 3368999999974 355566666677766655443
Q ss_pred cccCccccchhhhhcc-CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHH
Q 010028 339 RYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 417 (520)
Q Consensus 339 ~~~~~~~~~~~~~~~~-~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~ 417 (520)
.. ....+.+...... ...+.+.+..++.....+++||||+++.+++.++..|+..+ +.+..+||+|+..+|..++
T Consensus 213 ~~-~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~l~g~~~~~~R~~~l 288 (434)
T PRK11192 213 RR-ERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG---INCCYLEGEMVQAKRNEAI 288 (434)
T ss_pred cc-cccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC---CCEEEecCCCCHHHHHHHH
Confidence 22 2223333333333 34567777777777678899999999999999999999755 7899999999999999999
Q ss_pred HHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhc
Q 010028 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 494 (520)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~ 494 (520)
+.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++|+...|...+.++.+.+.
T Consensus 289 ~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 289 KRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred HHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888876554
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.3e-52 Score=436.75 Aligned_cols=368 Identities=27% Similarity=0.438 Sum_probs=307.6
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~ 101 (520)
.+|+++. |++.+++++.++||..|+++|.++|+.++. +++++++||||||||.+|++|+++.+... ...
T Consensus 6 ~~f~~l~------L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~ 74 (629)
T PRK11634 6 TTFADLG------LKAPILEALNDLGYEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKA 74 (629)
T ss_pred CCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCC
Confidence 3577777 999999999999999999999999998875 89999999999999999999999887643 345
Q ss_pred ccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc-ccceEEeccCccch
Q 010028 102 LRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQSSI 180 (520)
Q Consensus 102 ~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~~~~ 180 (520)
+++|||+||++||.|++++ +..+... .++.+..++|+.+.
T Consensus 75 ~~~LIL~PTreLa~Qv~~~---------------------------------------l~~~~~~~~~i~v~~~~gG~~~ 115 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEA---------------------------------------MTDFSKHMRGVNVVALYGGQRY 115 (629)
T ss_pred CeEEEEeCcHHHHHHHHHH---------------------------------------HHHHHhhcCCceEEEEECCcCH
Confidence 6899999999999995554 3333322 26888888999876
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+... +..+++|+|+||+++.+++.. +.+.++++++||+||||++++.++.+.+..+
T Consensus 116 ~~q~~~---------------------l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~ml~~gf~~di~~I 173 (629)
T PRK11634 116 DVQLRA---------------------LRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 (629)
T ss_pred HHHHHH---------------------hcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHHhhcccHHHHHHH
Confidence 665443 345789999999999999886 4577899999999999999999998888888
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 340 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (520)
+..++. ..|.+++|||++..+..+...++.+|..+.+.....
T Consensus 174 l~~lp~--------------------------------------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~ 215 (629)
T PRK11634 174 MAQIPE--------------------------------------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT 215 (629)
T ss_pred HHhCCC--------------------------------------CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc
Confidence 877653 346899999999888888888888887766554432
Q ss_pred cCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH
Q 010028 341 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f 420 (520)
. ...+.+.+.......|.+.+..++......++||||+++..+..++..|...+ +.+..+||+|+..+|+++++.|
T Consensus 216 ~-~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g---~~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 216 T-RPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNG---YNSAALNGDMNQALREQTLERL 291 (629)
T ss_pred c-CCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCC---CCEEEeeCCCCHHHHHHHHHHH
Confidence 2 23344444455556677888888887777899999999999999999999765 7899999999999999999999
Q ss_pred HcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCCc
Q 010028 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 500 (520)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (520)
++|+.+|||||+++++|||+|++++||+||+|.+...|+||+||+||.|+.|.+++|+.+.+...++.+.+.+ +..++.
T Consensus 292 r~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~-~~~i~~ 370 (629)
T PRK11634 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM-KLTIPE 370 (629)
T ss_pred hCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHh-CCCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999988888876544 344444
Q ss_pred ccCC
Q 010028 501 HSIP 504 (520)
Q Consensus 501 ~~~~ 504 (520)
.++|
T Consensus 371 ~~~p 374 (629)
T PRK11634 371 VELP 374 (629)
T ss_pred ecCC
Confidence 4443
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.6e-52 Score=428.25 Aligned_cols=365 Identities=29% Similarity=0.432 Sum_probs=303.4
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc--
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-- 99 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~-- 99 (520)
..|+++. |++.+.++|.++||..|+++|.+||+.+++ |+|+++.+|||||||++|++|+++.+.....
T Consensus 87 ~~f~~~~------l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~ 156 (475)
T PRK01297 87 TRFHDFN------LAPELMHAIHDLGFPYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK 156 (475)
T ss_pred CCHhHCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCccc
Confidence 3455555 999999999999999999999999998776 9999999999999999999999998875421
Q ss_pred ----ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEecc
Q 010028 100 ----RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAV 175 (520)
Q Consensus 100 ----~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (520)
..+++|||+||++|+.| +.+.+..+....++++..++
T Consensus 157 ~~~~~~~~aLil~PtreLa~Q---------------------------------------~~~~~~~l~~~~~~~v~~~~ 197 (475)
T PRK01297 157 ERYMGEPRALIIAPTRELVVQ---------------------------------------IAKDAAALTKYTGLNVMTFV 197 (475)
T ss_pred ccccCCceEEEEeCcHHHHHH---------------------------------------HHHHHHHhhccCCCEEEEEE
Confidence 14689999999999999 45555555566678899999
Q ss_pred CccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhh
Q 010028 176 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 255 (520)
Q Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~ 255 (520)
|+.....+...+. ...++|+|+||++|..++.. +...++++++|||||+|++++.++..
T Consensus 198 gg~~~~~~~~~~~--------------------~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViDEah~l~~~~~~~ 256 (475)
T PRK01297 198 GGMDFDKQLKQLE--------------------ARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLDEADRMLDMGFIP 256 (475)
T ss_pred ccCChHHHHHHHh--------------------CCCCCEEEECHHHHHHHHHc-CCcccccCceEEechHHHHHhcccHH
Confidence 9877666654432 24679999999999888775 45678999999999999999888877
Q ss_pred hHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeec
Q 010028 256 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 335 (520)
Q Consensus 256 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~ 335 (520)
.+..++...... ...|++++|||++.+...+...++.+|..+..
T Consensus 257 ~l~~i~~~~~~~------------------------------------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 300 (475)
T PRK01297 257 QVRQIIRQTPRK------------------------------------EERQTLLFSATFTDDVMNLAKQWTTDPAIVEI 300 (475)
T ss_pred HHHHHHHhCCCC------------------------------------CCceEEEEEeecCHHHHHHHHHhccCCEEEEe
Confidence 777777665321 13478999999988888888878888877665
Q ss_pred ccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHH
Q 010028 336 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 415 (520)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~ 415 (520)
...... ...+.+.........+...+..++......++||||++++.++.+++.|...+ +.+..+||+++..+|.+
T Consensus 301 ~~~~~~-~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 301 EPENVA-SDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDG---INAAQLSGDVPQHKRIK 376 (475)
T ss_pred ccCcCC-CCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHH
Confidence 544322 22333444444556677778888877777899999999999999999998765 78899999999999999
Q ss_pred HHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 416 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
+++.|++|+.++||||+++++|||+|++++||++++|.|..+|+||+||+||.|+.|.+++|+.++|...+..+.+.+..
T Consensus 377 ~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~ 456 (475)
T PRK01297 377 TLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGR 456 (475)
T ss_pred HHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888776654
Q ss_pred C
Q 010028 496 D 496 (520)
Q Consensus 496 ~ 496 (520)
.
T Consensus 457 ~ 457 (475)
T PRK01297 457 K 457 (475)
T ss_pred C
Confidence 3
No 17
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-52 Score=401.66 Aligned_cols=358 Identities=29% Similarity=0.443 Sum_probs=328.1
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
.+..|+++| |++..++.|.+.+|..|+..|.++|...+. |+|++=.|-||||||++|++|+++++...++
T Consensus 67 ~~~kF~dlp------ls~~t~kgLke~~fv~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW 136 (758)
T KOG0343|consen 67 TIKKFADLP------LSQKTLKGLKEAKFVKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKW 136 (758)
T ss_pred hhhhHHhCC------CchHHHHhHhhcCCccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCC
Confidence 445688888 999999999999999999999999776655 9999999999999999999999999876532
Q ss_pred ---ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccC
Q 010028 100 ---RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVG 176 (520)
Q Consensus 100 ---~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g 176 (520)
.|.-+||++|||+||.| ++..+.+.+...++..+++.|
T Consensus 137 s~~DGlGalIISPTRELA~Q---------------------------------------tFevL~kvgk~h~fSaGLiiG 177 (758)
T KOG0343|consen 137 SPTDGLGALIISPTRELALQ---------------------------------------TFEVLNKVGKHHDFSAGLIIG 177 (758)
T ss_pred CCCCCceeEEecchHHHHHH---------------------------------------HHHHHHHHhhccccccceeec
Confidence 46679999999999999 777888888888999999999
Q ss_pred ccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhh
Q 010028 177 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 256 (520)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~ 256 (520)
|.....+...+ +..+|+||||++|+.++..+..++..++.++|+||||++++++|...
T Consensus 178 G~~~k~E~eRi----------------------~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~t 235 (758)
T KOG0343|consen 178 GKDVKFELERI----------------------SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKT 235 (758)
T ss_pred CchhHHHHHhh----------------------hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHH
Confidence 98876665443 46799999999999999998889999999999999999999999999
Q ss_pred HHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecc
Q 010028 257 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 336 (520)
Q Consensus 257 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~ 336 (520)
+..|++.++. ..|.++||||.+..+..+.+..+.+|.++.+.
T Consensus 236 L~~Ii~~lP~--------------------------------------~RQTLLFSATqt~svkdLaRLsL~dP~~vsvh 277 (758)
T KOG0343|consen 236 LNAIIENLPK--------------------------------------KRQTLLFSATQTKSVKDLARLSLKDPVYVSVH 277 (758)
T ss_pred HHHHHHhCCh--------------------------------------hheeeeeecccchhHHHHHHhhcCCCcEEEEe
Confidence 9999999876 44789999999999999999999999999988
Q ss_pred cc-cccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHH
Q 010028 337 ET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 415 (520)
Q Consensus 337 ~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~ 415 (520)
.. ....|..+.++++.++...|+..|...++.+...+.|||++|.+++..++..|..+ .++..+..+||.|++..|-+
T Consensus 278 e~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-rpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 278 ENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-RPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred ccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-CCCCceeeeccchhHHHHHH
Confidence 44 47789999999999999999999999999999999999999999999999999987 67899999999999999999
Q ss_pred HHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHH
Q 010028 416 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487 (520)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~ 487 (520)
+++.|...+.-||+||++.++|+|+|.++.||.+|.|.++.+|+||+||+.|.+..|.+.++..+++.+.+.
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l 428 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAML 428 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998855443
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-52 Score=382.34 Aligned_cols=373 Identities=28% Similarity=0.430 Sum_probs=325.2
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
....|+.|+ |++++.+.+..+|+..|+|.|..||+.+++ |+|++=+|.||||||.++.+|+++++..+ .
T Consensus 5 t~~~F~~LG------l~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsed-P 73 (442)
T KOG0340|consen 5 TAKPFSILG------LSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSED-P 73 (442)
T ss_pred ccCchhhcC------ccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccC-C
Confidence 456788888 999999999999999999999999998876 99999999999999999999999999877 3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
-+..++|++||++||.| +.+.+...++..++++..++||.+
T Consensus 74 ~giFalvlTPTrELA~Q---------------------------------------iaEQF~alGk~l~lK~~vivGG~d 114 (442)
T KOG0340|consen 74 YGIFALVLTPTRELALQ---------------------------------------IAEQFIALGKLLNLKVSVIVGGTD 114 (442)
T ss_pred CcceEEEecchHHHHHH---------------------------------------HHHHHHHhcccccceEEEEEccHH
Confidence 56679999999999999 888889999999999999999988
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC---cccccccEEEeehHHHHHHHHhhhh
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---FTLEHLCYLVVDETDRLLREAYQAW 256 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~---~~~~~~~~lViDEah~l~~~~~~~~ 256 (520)
.-.+... +.+.++++|+||+++..++.++.. ..+++++++|+|||+.+++..|.+.
T Consensus 115 ~i~qa~~---------------------L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~ 173 (442)
T KOG0340|consen 115 MIMQAAI---------------------LSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDI 173 (442)
T ss_pred Hhhhhhh---------------------cccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhH
Confidence 7666544 456789999999999999987633 3488899999999999999999999
Q ss_pred HHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeec-
Q 010028 257 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT- 335 (520)
Q Consensus 257 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~- 335 (520)
++.+.+-++. ++|..++|||+++.+..+.......+..+..
T Consensus 174 L~~i~e~lP~--------------------------------------~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e 215 (442)
T KOG0340|consen 174 LEGIEECLPK--------------------------------------PRQTLLFSATITDTIKQLFGCPITKSIAFELE 215 (442)
T ss_pred HhhhhccCCC--------------------------------------ccceEEEEeehhhHHHHhhcCCcccccceEEe
Confidence 9888877665 3478999999998887776665554322222
Q ss_pred ccccccCccccchhhhhccCCCcHHHHHHHHHhc---CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHH
Q 010028 336 GETRYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412 (520)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~---~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~ 412 (520)
..+.....+.+.+.+..++...+..+++.+++.+ ..+.++||+++...|+.++..|++.+ .++..+|+.|++++
T Consensus 216 ~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le---~r~~~lHs~m~Q~e 292 (442)
T KOG0340|consen 216 VIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE---VRVVSLHSQMPQKE 292 (442)
T ss_pred ccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc---eeeeehhhcchHHH
Confidence 2234466777788888889999999999999876 35789999999999999999999876 89999999999999
Q ss_pred HHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHH
Q 010028 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 492 (520)
Q Consensus 413 r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~ 492 (520)
|-..+.+|+++..+|||||++.++|+|+|.+++|||+|.|.++..|+||+||+.|.|+.|.++.|+...|++.+..+++.
T Consensus 293 R~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~ 372 (442)
T KOG0340|consen 293 RLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEE 372 (442)
T ss_pred HHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccCCc
Q 010028 493 ADNDSCPIHSIPS 505 (520)
Q Consensus 493 ~~~~~~~~~~~~~ 505 (520)
+++ +..+.....
T Consensus 373 igk-Kl~e~~~~~ 384 (442)
T KOG0340|consen 373 IGK-KLTEYNKVQ 384 (442)
T ss_pred Hhc-ccccccccc
Confidence 886 444444333
No 19
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.1e-52 Score=396.55 Aligned_cols=366 Identities=31% Similarity=0.462 Sum_probs=317.0
Q ss_pred CccCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHH
Q 010028 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (520)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~ 93 (520)
|..+-.....|++.+ |++..+.++..+||.++++.|+..++- ++.|+|++..|-||+|||++|++|+++.
T Consensus 74 ~~~s~~~~~~f~~~~------LS~~t~kAi~~~GF~~MT~VQ~~ti~p----ll~gkDvl~~AKTGtGKTlAFLiPaie~ 143 (543)
T KOG0342|consen 74 DNDSITTTFRFEEGS------LSPLTLKAIKEMGFETMTPVQQKTIPP----LLEGKDVLAAAKTGTGKTLAFLLPAIEL 143 (543)
T ss_pred cccchhhhhHhhccc------cCHHHHHHHHhcCccchhHHHHhhcCc----cCCCccceeeeccCCCceeeehhHHHHH
Confidence 334444456677777 999999999999999999999987554 4459999999999999999999999999
Q ss_pred Hhhhcc---ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-cc
Q 010028 94 LSNRAV---RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GL 169 (520)
Q Consensus 94 l~~~~~---~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 169 (520)
+.+... .+..++|++|||+||.|.+.+ +..+.... .+
T Consensus 144 l~k~~~~~r~~~~vlIi~PTRELA~Q~~~e---------------------------------------ak~Ll~~h~~~ 184 (543)
T KOG0342|consen 144 LRKLKFKPRNGTGVLIICPTRELAMQIFAE---------------------------------------AKELLKYHESI 184 (543)
T ss_pred HHhcccCCCCCeeEEEecccHHHHHHHHHH---------------------------------------HHHHHhhCCCc
Confidence 877532 344599999999999995554 44444444 78
Q ss_pred eEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHH
Q 010028 170 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249 (520)
Q Consensus 170 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~ 249 (520)
.+..+.||.+...+... +..+++|+|+||++|.+++++...+.+..++++|+||||+++
T Consensus 185 ~v~~viGG~~~~~e~~k---------------------l~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlL 243 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADK---------------------LVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLL 243 (543)
T ss_pred ceEEEeCCccchHHHHH---------------------hhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhh
Confidence 89999999988777655 334789999999999999999888888889999999999999
Q ss_pred HHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCC
Q 010028 250 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 329 (520)
Q Consensus 250 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~ 329 (520)
+.+|.+.++.|++.++. ..|..++|||.+..+..+.+..+..
T Consensus 244 d~GF~~di~~Ii~~lpk--------------------------------------~rqt~LFSAT~~~kV~~l~~~~L~~ 285 (543)
T KOG0342|consen 244 DIGFEEDVEQIIKILPK--------------------------------------QRQTLLFSATQPSKVKDLARGALKR 285 (543)
T ss_pred hcccHHHHHHHHHhccc--------------------------------------cceeeEeeCCCcHHHHHHHHHhhcC
Confidence 99999999999998875 4478999999999999988876664
Q ss_pred -ceeeecccc-cccCccccchhhhhccCCCcHHHHHHHHHhcCC-CcEEEEecCHHHHHHHHHHHhhcCCCceeEEEecc
Q 010028 330 -PLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 406 (520)
Q Consensus 330 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~-~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~ 406 (520)
|.++..... .....+.+.+.+.+++...++..+..+++++.. .++||||+|...+..++..|+... +.+..+||
T Consensus 286 d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d---lpv~eiHg 362 (543)
T KOG0342|consen 286 DPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID---LPVLEIHG 362 (543)
T ss_pred CceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC---Cchhhhhc
Confidence 777665543 345577788888888888888899999988866 899999999999999999999554 88999999
Q ss_pred ccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHH
Q 010028 407 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486 (520)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~ 486 (520)
.+++..|..+...|++.+.-|||||++.++|+|+|+++.||+||+|.++++|+||+||+||.|+.|.++++..+.+...+
T Consensus 363 k~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Fl 442 (543)
T KOG0342|consen 363 KQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFL 442 (543)
T ss_pred CCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 010028 487 KKLL 490 (520)
Q Consensus 487 ~~~~ 490 (520)
+.+.
T Consensus 443 r~LK 446 (543)
T KOG0342|consen 443 RYLK 446 (543)
T ss_pred HHHh
Confidence 8875
No 20
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.8e-51 Score=394.94 Aligned_cols=408 Identities=27% Similarity=0.432 Sum_probs=337.1
Q ss_pred cCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..|-.+.+|++.+ ++.++++.+...||..|+|+|..||+- ++.++|++..|.||||||.+|++|++..+.
T Consensus 239 ~lpnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aipl----~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 239 RLPNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIPL----GLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred CCCccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhccc----hhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 4566777888888 899999999999999999999998764 445899999999999999999999988774
Q ss_pred hh--------ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc
Q 010028 96 NR--------AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV 167 (520)
Q Consensus 96 ~~--------~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (520)
.- ...++++++++||++|++| +.....+++...
T Consensus 309 slP~~~~~en~~~gpyaiilaptReLaqq---------------------------------------IeeEt~kf~~~l 349 (673)
T KOG0333|consen 309 SLPPMARLENNIEGPYAIILAPTRELAQQ---------------------------------------IEEETNKFGKPL 349 (673)
T ss_pred cCCCcchhhhcccCceeeeechHHHHHHH---------------------------------------HHHHHHHhcccc
Confidence 32 2357899999999999999 777788888888
Q ss_pred cceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHH
Q 010028 168 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 247 (520)
Q Consensus 168 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 247 (520)
++++..++||.+..++-- .+..+|.|+|+||+.|.+.+.+ ..+-++...++|+|||+.
T Consensus 350 g~r~vsvigg~s~EEq~f---------------------qls~gceiviatPgrLid~Len-r~lvl~qctyvvldeadr 407 (673)
T KOG0333|consen 350 GIRTVSVIGGLSFEEQGF---------------------QLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADR 407 (673)
T ss_pred cceEEEEecccchhhhhh---------------------hhhccceeeecCchHHHHHHHH-HHHHhccCceEeccchhh
Confidence 999999999998776632 2446899999999999999987 345678888999999999
Q ss_pred HHHHHhhhhHHHHHHhhccCcccccccc---cccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhh
Q 010028 248 LLREAYQAWLPTVLQLTRSDNENRFSDA---STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 324 (520)
Q Consensus 248 l~~~~~~~~l~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 324 (520)
|++.+|.+.+..++..++......-.+. ...+...+ .......|.+-+|||.++.+..+++
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~----------------~~~k~yrqT~mftatm~p~verlar 471 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNF----------------SSSKKYRQTVMFTATMPPAVERLAR 471 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhc----------------ccccceeEEEEEecCCChHHHHHHH
Confidence 9999999999999998876432211110 00000000 0111235789999999999999999
Q ss_pred cccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEe
Q 010028 325 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 404 (520)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~ 404 (520)
.++.+|+++.++..... ...+++.........|...|.+++.+.-..++|||+|+.+.|+.+++.|...+ +.+..+
T Consensus 472 ~ylr~pv~vtig~~gk~-~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g---~~~~tl 547 (673)
T KOG0333|consen 472 SYLRRPVVVTIGSAGKP-TPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAG---YKVTTL 547 (673)
T ss_pred HHhhCCeEEEeccCCCC-ccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhcc---ceEEEe
Confidence 99999999988876633 45666666667777789999999999888899999999999999999999877 999999
Q ss_pred ccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHH
Q 010028 405 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484 (520)
Q Consensus 405 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~ 484 (520)
||+-+..+|+.++..|++|..+|||||++..+|||+|+|++||+||++.|...|.|||||+||.|+.|.+++|+.+.|..
T Consensus 548 Hg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 548 HGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred eCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhc---CCCCCcccCCchhhhhhhhccccCC
Q 010028 485 RFKKLLQKAD---NDSCPIHSIPSSLIESLRPVYKSGD 519 (520)
Q Consensus 485 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (520)
.|..+.+.+. +.+| |.++-.+--+.+++|.
T Consensus 628 v~ydLkq~l~es~~s~~-----P~Ela~h~~a~~K~~~ 660 (673)
T KOG0333|consen 628 VFYDLKQALRESVKSHC-----PPELANHPDAQFKPGT 660 (673)
T ss_pred HHHHHHHHHHHhhhccC-----ChhhccChhhcccccc
Confidence 7766666555 3343 4444444444455553
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.3e-50 Score=411.52 Aligned_cols=361 Identities=24% Similarity=0.424 Sum_probs=291.9
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
..+|++++ +++.+.+++..+||..|+++|.+||+.+.+ ++++++.||||+|||++|++|+++.+... ..
T Consensus 27 ~~~~~~l~------l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~ 95 (401)
T PTZ00424 27 VDSFDALK------LNEDLLRGIYSYGFEKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYD-LN 95 (401)
T ss_pred cCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCC-CC
Confidence 45677777 999999999999999999999999998876 89999999999999999999999877543 34
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
+.++||++|+++|+.| +...+..++......+....|+...
T Consensus 96 ~~~~lil~Pt~~L~~Q---------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~ 136 (401)
T PTZ00424 96 ACQALILAPTRELAQQ---------------------------------------IQKVVLALGDYLKVRCHACVGGTVV 136 (401)
T ss_pred CceEEEECCCHHHHHH---------------------------------------HHHHHHHHhhhcCceEEEEECCcCH
Confidence 5689999999999999 4444555555556777777887765
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+... +..+++|+|+||+.+.+.+.. +...++++++|||||||++.+.++...+..+
T Consensus 137 ~~~~~~---------------------~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~~~~~~~~~~~i 194 (401)
T PTZ00424 137 RDDINK---------------------LKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEMLSRGFKGQIYDV 194 (401)
T ss_pred HHHHHH---------------------HcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHHhcchHHHHHHH
Confidence 544332 334579999999999988876 3467899999999999999888877777766
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 340 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (520)
+.... +..|++++|||++.........++.+|..+.......
T Consensus 195 ~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (401)
T PTZ00424 195 FKKLP--------------------------------------PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL 236 (401)
T ss_pred HhhCC--------------------------------------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 65543 2457899999998776666666666665544333221
Q ss_pred cCccccchhhhhcc-CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHH
Q 010028 341 KLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419 (520)
Q Consensus 341 ~~~~~~~~~~~~~~-~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~ 419 (520)
. ...+.++..... ...+...+..++......++||||+++..++.+++.|...+ +.+..+||+++..+|..+++.
T Consensus 237 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~---~~~~~~h~~~~~~~R~~i~~~ 312 (401)
T PTZ00424 237 T-LEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERD---FTVSCMHGDMDQKDRDLIMRE 312 (401)
T ss_pred c-cCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC---CcEEEEeCCCCHHHHHHHHHH
Confidence 1 222233222222 23355566666666677899999999999999999998764 789999999999999999999
Q ss_pred HHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
|++|+++|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++|+.+++.+.++++.+.+..
T Consensus 313 f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~ 388 (401)
T PTZ00424 313 FRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNT 388 (401)
T ss_pred HHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999776664
No 22
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-51 Score=373.90 Aligned_cols=370 Identities=27% Similarity=0.448 Sum_probs=330.8
Q ss_pred cccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc
Q 010028 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (520)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~ 98 (520)
++-+.||+.- |..+++..+-+.||..|+|.|.++|+.++ .|+|++..|..|+|||.+|.+|++..+...
T Consensus 82 TkG~efEd~~------Lkr~LLmgIfe~G~ekPSPiQeesIPiaL----tGrdiLaRaKNGTGKT~a~~IP~Lekid~~- 150 (459)
T KOG0326|consen 82 TKGNEFEDYC------LKRELLMGIFEKGFEKPSPIQEESIPIAL----TGRDILARAKNGTGKTAAYCIPVLEKIDPK- 150 (459)
T ss_pred ccCccHHHhh------hhHHHHHHHHHhccCCCCCccccccceee----cchhhhhhccCCCCCccceechhhhhcCcc-
Confidence 3445566666 89999999999999999999999977655 499999999999999999999999988654
Q ss_pred cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCcc
Q 010028 99 VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQS 178 (520)
Q Consensus 99 ~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~ 178 (520)
....+.++++||++||-| .......+++..++.+...+||+
T Consensus 151 ~~~IQ~~ilVPtrelALQ---------------------------------------tSqvc~~lskh~~i~vmvttGGT 191 (459)
T KOG0326|consen 151 KNVIQAIILVPTRELALQ---------------------------------------TSQVCKELSKHLGIKVMVTTGGT 191 (459)
T ss_pred ccceeEEEEeecchhhHH---------------------------------------HHHHHHHHhcccCeEEEEecCCc
Confidence 356789999999999999 66667777777889999999998
Q ss_pred chHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHH
Q 010028 179 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 258 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~ 258 (520)
+....+-. +....+++|+||++++++... +...+++-.++|+||||.+++..|...+.
T Consensus 192 ~lrDDI~R---------------------l~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F~~~~e 249 (459)
T KOG0326|consen 192 SLRDDIMR---------------------LNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADKLLSVDFQPIVE 249 (459)
T ss_pred ccccceee---------------------ecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhhhhchhhhhHHH
Confidence 86665432 345679999999999999986 56778999999999999999999999999
Q ss_pred HHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccc
Q 010028 259 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 338 (520)
Q Consensus 259 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~ 338 (520)
.++..++. ..|++++|||.+-.+..+...++.+|..++.-.+
T Consensus 250 ~li~~lP~--------------------------------------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e 291 (459)
T KOG0326|consen 250 KLISFLPK--------------------------------------ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE 291 (459)
T ss_pred HHHHhCCc--------------------------------------cceeeEEecccchhHHHHHHHhccCcceeehhhh
Confidence 99998876 4478999999999999999999999998876654
Q ss_pred cccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHH
Q 010028 339 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 418 (520)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~ 418 (520)
-....+.+++..+.+..|..+|..++....-...||||||...++.+++.+.+.| +...++|+.|.+..|..++.
T Consensus 292 --Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelG---yscyyiHakM~Q~hRNrVFH 366 (459)
T KOG0326|consen 292 --LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG---YSCYYIHAKMAQEHRNRVFH 366 (459)
T ss_pred --hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhcc---chhhHHHHHHHHhhhhhhhh
Confidence 3456788899999999999999999999999999999999999999999999877 88899999999999999999
Q ss_pred HHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCC
Q 010028 419 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 498 (520)
Q Consensus 419 ~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 498 (520)
+|++|..+.||||+.+.+|||++.+++||++|+|.+.+.|.||+||.||.|..|.+|.++..+|...+.++++++..+=
T Consensus 367 dFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI- 445 (459)
T KOG0326|consen 367 DFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEI- 445 (459)
T ss_pred hhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccCCch
Q 010028 499 PIHSIPSS 506 (520)
Q Consensus 499 ~~~~~~~~ 506 (520)
.++|+.
T Consensus 446 --~pip~~ 451 (459)
T KOG0326|consen 446 --KPIPSN 451 (459)
T ss_pred --ccCCCc
Confidence 556554
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-51 Score=383.16 Aligned_cols=378 Identities=28% Similarity=0.449 Sum_probs=324.4
Q ss_pred CCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
.|...-+|++.-. ..+++...+.+.||.+|+|+|.+||+-++. |.|++-.|.||+|||++|++|.+.++..
T Consensus 214 IPnP~ctFddAFq-----~~pevmenIkK~GFqKPtPIqSQaWPI~LQ----G~DliGVAQTgtgKtL~~L~pg~ihi~a 284 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQ-----CYPEVMENIKKTGFQKPTPIQSQAWPILLQ----GIDLIGVAQTGTGKTLAFLLPGFIHIDA 284 (629)
T ss_pred CCCCcCcHHHHHh-----hhHHHHHHHHhccCCCCCcchhcccceeec----CcceEEEEecCCCcCHHHhccceeeeec
Confidence 4555666666543 678999999999999999999999987665 9999999999999999999997766643
Q ss_pred h-----ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceE
Q 010028 97 R-----AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 171 (520)
Q Consensus 97 ~-----~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (520)
+ ...++.+|+++||++|+.| +.....++ ...+.+.
T Consensus 285 qp~~~~qr~~p~~lvl~ptreLalq---------------------------------------ie~e~~ky-syng~ks 324 (629)
T KOG0336|consen 285 QPKRREQRNGPGVLVLTPTRELALQ---------------------------------------IEGEVKKY-SYNGLKS 324 (629)
T ss_pred cchhhhccCCCceEEEeccHHHHHH---------------------------------------HHhHHhHh-hhcCcce
Confidence 2 2356789999999999999 44333333 3457888
Q ss_pred EeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHH
Q 010028 172 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251 (520)
Q Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~ 251 (520)
.|++|+.+...+.+. +.++.+|+|+||++|.++... ..+++.++.++|+||||.|+++
T Consensus 325 vc~ygggnR~eqie~---------------------lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDM 382 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIED---------------------LKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDM 382 (629)
T ss_pred EEEecCCCchhHHHH---------------------HhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcc
Confidence 999999888877765 445889999999999888876 4588999999999999999999
Q ss_pred HhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCce
Q 010028 252 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 331 (520)
Q Consensus 252 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~ 331 (520)
+|...++.|+-.++. ..|++..|||++..+..+.+.++.+|.
T Consensus 383 gFEpqIrkilldiRP--------------------------------------DRqtvmTSATWP~~VrrLa~sY~Kep~ 424 (629)
T KOG0336|consen 383 GFEPQIRKILLDIRP--------------------------------------DRQTVMTSATWPEGVRRLAQSYLKEPM 424 (629)
T ss_pred cccHHHHHHhhhcCC--------------------------------------cceeeeecccCchHHHHHHHHhhhCce
Confidence 999999999877654 567899999999999999999999999
Q ss_pred eeecccccccCccccchhhhhccCCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCH
Q 010028 332 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410 (520)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~ 410 (520)
++-.+.-....-..+.+.........+.+.+..++.+. +..|+||||.+...|..+.+.|.-.+ +.+..+||+-.+
T Consensus 425 ~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g---i~~q~lHG~r~Q 501 (629)
T KOG0336|consen 425 IVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG---ISSQSLHGNREQ 501 (629)
T ss_pred EEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc---cchhhccCChhh
Confidence 88777655555566677666666677777777777665 67799999999999999998887554 888899999999
Q ss_pred HHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHH
Q 010028 411 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 490 (520)
Q Consensus 411 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~ 490 (520)
.+|+..+++|++|+.+|||+|+..++|+|+|+++||++||+|.++++|+||+||+||.|+.|.++.|+..+|...+.+++
T Consensus 502 ~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 502 SDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred hhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcccCCchhhh
Q 010028 491 QKADNDSCPIHSIPSSLIE 509 (520)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~ 509 (520)
+-+++.. +.+|+++..
T Consensus 582 ~ILe~ae---QevPdeL~~ 597 (629)
T KOG0336|consen 582 QILERAE---QEVPDELVR 597 (629)
T ss_pred HHHHHhh---hhCcHHHHH
Confidence 9999866 888888764
No 24
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-50 Score=380.09 Aligned_cols=386 Identities=29% Similarity=0.419 Sum_probs=323.0
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc---
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~--- 98 (520)
.+|+++. |++.+++++.+.||..|+..|+.||+-++. |+|++..|.||||||.+|++|+++.+...+
T Consensus 19 ktFe~~g------LD~RllkAi~~lG~ekpTlIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~ 88 (569)
T KOG0346|consen 19 KTFEEFG------LDSRLLKAITKLGWEKPTLIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN 88 (569)
T ss_pred ccHHHhC------CCHHHHHHHHHhCcCCcchhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcc
Confidence 6788888 999999999999999999999999877665 999999999999999999999999987643
Q ss_pred --cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccC
Q 010028 99 --VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVG 176 (520)
Q Consensus 99 --~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g 176 (520)
..++.+++++||++||.|.|+.+.++ ..+|.. .+++.-+..
T Consensus 89 ~~e~~~sa~iLvPTkEL~qQvy~viekL------------------------------------~~~c~k-~lr~~nl~s 131 (569)
T KOG0346|consen 89 DGEQGPSAVILVPTKELAQQVYKVIEKL------------------------------------VEYCSK-DLRAINLAS 131 (569)
T ss_pred cccccceeEEEechHHHHHHHHHHHHHH------------------------------------HHHHHH-hhhhhhhhc
Confidence 35678999999999999976654432 111111 233333332
Q ss_pred ccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhh
Q 010028 177 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 256 (520)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~ 256 (520)
..+.... +..+.+.++|+|+||+.+...+..+....+..++++|+||||.+++-+|.+.
T Consensus 132 ~~sdsv~---------------------~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeed 190 (569)
T KOG0346|consen 132 SMSDSVN---------------------SVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEED 190 (569)
T ss_pred ccchHHH---------------------HHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHH
Confidence 2221111 2235567899999999999999886557788999999999999999999999
Q ss_pred HHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecc
Q 010028 257 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 336 (520)
Q Consensus 257 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~ 336 (520)
+..+...++. ..|.++||||+..++..+.+..+.+|++....
T Consensus 191 lk~l~~~LPr--------------------------------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~ 232 (569)
T KOG0346|consen 191 LKKLRSHLPR--------------------------------------IYQCFLMSATLSDDVQALKKLFLHNPVILKLT 232 (569)
T ss_pred HHHHHHhCCc--------------------------------------hhhheeehhhhhhHHHHHHHHhccCCeEEEec
Confidence 9999988764 45789999999999999999999999999988
Q ss_pred cccccCccccchhhhhccCCCcHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHH
Q 010028 337 ETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 415 (520)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~ 415 (520)
+.....+..+.++.+.|....|+..+..+++- .-.++.|||+|+.+.|.++.-.|+.+| ++..+++|.++.+-|..
T Consensus 233 e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFG---iksciLNseLP~NSR~H 309 (569)
T KOG0346|consen 233 EGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG---IKSCILNSELPANSRCH 309 (569)
T ss_pred cccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhC---cHhhhhcccccccchhh
Confidence 88888889999999999999999999888874 578899999999999999999999988 89999999999999999
Q ss_pred HHHHHHcCCceEEEEec-----------------------------------ccccCCCCCCCcEEEEccCCCCHHHHHH
Q 010028 416 TLKAFREGKIQVLVSSD-----------------------------------AMTRGMDVEGVNNVVNYDKPAYIKTYIH 460 (520)
Q Consensus 416 ~~~~f~~g~~~vLv~T~-----------------------------------~~~~Gidl~~~~~VI~~~~p~s~~~~~Q 460 (520)
+++.|.+|-++++|+|+ -.++|||+.++..|+++|+|.+...|+|
T Consensus 310 ii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIH 389 (569)
T KOG0346|consen 310 IIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIH 389 (569)
T ss_pred HHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHH
Confidence 99999999999999999 1358999999999999999999999999
Q ss_pred HHhhcccCCCCCcEEEEEecchHH---HHHHHHHHh----cCCCCCcccCCchhhhhhhhccc
Q 010028 461 RAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKA----DNDSCPIHSIPSSLIESLRPVYK 516 (520)
Q Consensus 461 ~~GR~~R~~~~g~~i~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 516 (520)
|+||++|.++.|.++.|+.+.+.. .++++.++- +.+-+-.-++..+.++.++++-+
T Consensus 390 RvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR~e 452 (569)
T KOG0346|consen 390 RVGRTARGNNKGTALSFVSPKEEFGKESLESILKDENRQEGRQILQPYQFRMEEVESFRYRAE 452 (569)
T ss_pred hccccccCCCCCceEEEecchHHhhhhHHHHHHhhHHhhcCccccccccchHHHHHHHHHHHH
Confidence 999999999999999999998766 455444432 22223335577788888887643
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-49 Score=382.55 Aligned_cols=375 Identities=34% Similarity=0.489 Sum_probs=309.9
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA- 98 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~- 98 (520)
...|..++ |++-+...|++ +++..|+..|.++|+.+++ |+|++|.++||||||++|++|+++.+....
T Consensus 135 s~~f~~LG------L~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ 204 (708)
T KOG0348|consen 135 SAAFASLG------LHPHLVSHLNTKMKISAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEP 204 (708)
T ss_pred cccchhcC------CCHHHHHHHHHHhccCccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCc
Confidence 34455555 99999999976 8999999999999998876 999999999999999999999999987542
Q ss_pred ----cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEec
Q 010028 99 ----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLA 174 (520)
Q Consensus 99 ----~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (520)
..|+.+||++|||+||.|+|+.+++++. ...++-.+.+
T Consensus 205 ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~--------------------------------------~~hWIVPg~l 246 (708)
T KOG0348|consen 205 KIQRSDGPYALVIVPTRELALQIYETVQKLLK--------------------------------------PFHWIVPGVL 246 (708)
T ss_pred cccccCCceEEEEechHHHHHHHHHHHHHHhc--------------------------------------CceEEeecee
Confidence 2467799999999999997666555422 1236777888
Q ss_pred cCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhh
Q 010028 175 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 254 (520)
Q Consensus 175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~ 254 (520)
.||.....+... ++.+++|+|+||++|.+.+.+.+.+.++.+..||+||+|.+++.+|.
T Consensus 247 mGGEkkKSEKAR---------------------LRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfe 305 (708)
T KOG0348|consen 247 MGGEKKKSEKAR---------------------LRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFE 305 (708)
T ss_pred ecccccccHHHH---------------------HhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccch
Confidence 888776655444 44588999999999999999988899999999999999999999999
Q ss_pred hhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCC-CCCccchheeeecccccCCchhhhhcccCCceee
Q 010028 255 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK-DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333 (520)
Q Consensus 255 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~ 333 (520)
+.+..|++.+...... .+. ....+..|.+++|||++..+..+....+.+|+++
T Consensus 306 kdit~Il~~v~~~~~~--------------------------e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I 359 (708)
T KOG0348|consen 306 KDITQILKAVHSIQNA--------------------------ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYI 359 (708)
T ss_pred hhHHHHHHHHhhccch--------------------------hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceee
Confidence 9999999887541110 111 1222356789999999999999999999999988
Q ss_pred eccc------------------------ccccCccccchhhhhccCCCcHHHHHHHHHhc----CCCcEEEEecCHHHHH
Q 010028 334 TTGE------------------------TRYKLPERLESYKLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTH 385 (520)
Q Consensus 334 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~----~~~k~lIf~~s~~~~~ 385 (520)
.... +....|+.+.+.+.+++...++-.|..++.+. ...++|||+.+.+.++
T Consensus 360 ~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~Ve 439 (708)
T KOG0348|consen 360 SLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVE 439 (708)
T ss_pred eccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHH
Confidence 7221 11345666777778888888888877776653 5679999999999999
Q ss_pred HHHHHHhhcC-------------------CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEE
Q 010028 386 RLCTLLNHFG-------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 446 (520)
Q Consensus 386 ~l~~~L~~~~-------------------~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~V 446 (520)
.-++.|.... ..+.++..+||.|.+.+|..+++.|...+..||+||++.++|+|+|+++.|
T Consensus 440 FHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~v 519 (708)
T KOG0348|consen 440 FHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLV 519 (708)
T ss_pred HHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeE
Confidence 8888876521 124678899999999999999999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHH
Q 010028 447 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 490 (520)
Q Consensus 447 I~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~ 490 (520)
|.||.|.+.++|+||+||+.|.|..|.+++|..+.+.+.++.+.
T Consensus 520 VQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~ 563 (708)
T KOG0348|consen 520 VQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLK 563 (708)
T ss_pred EEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHH
Confidence 99999999999999999999999999999999999998555443
No 26
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-50 Score=389.62 Aligned_cols=390 Identities=28% Similarity=0.431 Sum_probs=322.1
Q ss_pred cCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..|.++..|++-. +.+.+...+...++..|+|+|+.+|+.+.. |++++++|+||+|||.+|++|++.+++
T Consensus 68 ~~p~~i~~f~~~~------l~~~l~~ni~~~~~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~ 137 (482)
T KOG0335|consen 68 DVPPHIPTFDEAI------LGEALAGNIKRSGYTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLL 137 (482)
T ss_pred ccCCCcccccccc------hhHHHhhccccccccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHH
Confidence 4455555666555 788888888889999999999999876554 999999999999999999999999997
Q ss_pred hhcc---------ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc
Q 010028 96 NRAV---------RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA 166 (520)
Q Consensus 96 ~~~~---------~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (520)
..+. ..++++|++||++||.| +++..+++.-.
T Consensus 138 ~~~~~~~~~~~~~~~P~~lIlapTReL~~Q---------------------------------------i~nea~k~~~~ 178 (482)
T KOG0335|consen 138 DEGPEDRGESGGGVYPRALILAPTRELVDQ---------------------------------------IYNEARKFSYL 178 (482)
T ss_pred hcCcccCcccCCCCCCceEEEeCcHHHhhH---------------------------------------HHHHHHhhccc
Confidence 6532 24789999999999999 55556666666
Q ss_pred ccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHH
Q 010028 167 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 246 (520)
Q Consensus 167 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 246 (520)
.++++...+|+.+...+... +.++++|+++||++|.+++.. +.+.+++.+++|+||||
T Consensus 179 s~~~~~~~ygg~~~~~q~~~---------------------~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vLDEAD 236 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRF---------------------IKRGCDILVATPGRLKDLIER-GKISLDNCKFLVLDEAD 236 (482)
T ss_pred ccceeeeeeCCcchhhhhhh---------------------hccCccEEEecCchhhhhhhc-ceeehhhCcEEEecchH
Confidence 78999999999776666544 446889999999999999987 56889999999999999
Q ss_pred HHHH-HHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhc
Q 010028 247 RLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 325 (520)
Q Consensus 247 ~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 325 (520)
.|++ .+|...++.|+....... ....|.++||||.+..+..+...
T Consensus 237 rMlD~mgF~p~Ir~iv~~~~~~~----------------------------------~~~~qt~mFSAtfp~~iq~l~~~ 282 (482)
T KOG0335|consen 237 RMLDEMGFEPQIRKIVEQLGMPP----------------------------------KNNRQTLLFSATFPKEIQRLAAD 282 (482)
T ss_pred HhhhhccccccHHHHhcccCCCC----------------------------------ccceeEEEEeccCChhhhhhHHH
Confidence 9999 899999999998765422 23568899999999888887777
Q ss_pred ccCC-ceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcC----CC-----cEEEEecCHHHHHHHHHHHhhcC
Q 010028 326 DLHH-PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG----EE-----KCIVFTSSVESTHRLCTLLNHFG 395 (520)
Q Consensus 326 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~----~~-----k~lIf~~s~~~~~~l~~~L~~~~ 395 (520)
++.+ ..++.+.... .....+.+-...+....|...|..++.... .+ +++|||.+++.|..++..|...+
T Consensus 283 fl~~~yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 283 FLKDNYIFLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG 361 (482)
T ss_pred HhhccceEEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC
Confidence 7765 4444444333 345566666677777888888888887543 33 89999999999999999999765
Q ss_pred CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEE
Q 010028 396 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 475 (520)
Q Consensus 396 ~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i 475 (520)
+....+||+-.+.+|.+.++.|+.|+..+||||+++++|+|+|+|+|||+||+|.+..+|+||+||+||.|+.|.++
T Consensus 362 ---~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~at 438 (482)
T KOG0335|consen 362 ---YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRAT 438 (482)
T ss_pred ---CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchHHHHHHHHHHhcCCCCCcccCCchhhhhhhhcccc
Q 010028 476 TLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 517 (520)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (520)
.|++..+....+.+.+-+..++ ..+|+-+.+..+.+.-.
T Consensus 439 sf~n~~~~~i~~~L~~~l~ea~---q~vP~wl~~~~~~~~~~ 477 (482)
T KOG0335|consen 439 SFFNEKNQNIAKALVEILTEAN---QEVPQWLSELSRERELG 477 (482)
T ss_pred EEeccccchhHHHHHHHHHHhc---ccCcHHHHhhhhhcccc
Confidence 9999888777777776666655 67777776644433333
No 27
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-49 Score=382.41 Aligned_cols=392 Identities=31% Similarity=0.445 Sum_probs=316.9
Q ss_pred ccCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhHHHHHHH
Q 010028 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93 (520)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ll~il~~ 93 (520)
...+.+++-|.+++ |+..++++|+++||..|+++|.-.++.++. | .|++=.|.||||||++|-+|+++.
T Consensus 174 ~~~~~DvsAW~~l~------lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~----gk~DIlGaAeTGSGKTLAFGIPiv~~ 243 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLF------LPMEILRALSNLGFSRPTEIQSLVLPAAIR----GKVDILGAAETGSGKTLAFGIPIVER 243 (731)
T ss_pred cccccChHHHhcCC------CCHHHHHHHHhcCCCCCccchhhcccHhhc----cchhcccccccCCCceeeecchhhhh
Confidence 35677888888887 999999999999999999999998887665 6 899999999999999999999985
Q ss_pred Hhhh----------cccccc--EEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHh
Q 010028 94 LSNR----------AVRCLR--ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFA 161 (520)
Q Consensus 94 l~~~----------~~~~~~--vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (520)
+... ..+.++ .||++|||+||.| +..-+.
T Consensus 244 l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q---------------------------------------V~~Hl~ 284 (731)
T KOG0347|consen 244 LLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ---------------------------------------VKQHLK 284 (731)
T ss_pred hhhccchHhhhhhHHhccCcceeEEecChHHHHHH---------------------------------------HHHHHH
Confidence 5321 123455 9999999999999 777788
Q ss_pred hhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC--cccccccE
Q 010028 162 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--FTLEHLCY 239 (520)
Q Consensus 162 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~--~~~~~~~~ 239 (520)
..+...++++..++||.....+.+. ++..++|+|+||++|+.++...-. -.++++++
T Consensus 285 ai~~~t~i~v~si~GGLavqKQqRl---------------------L~~~p~IVVATPGRlweli~e~n~~l~~~k~vkc 343 (731)
T KOG0347|consen 285 AIAEKTQIRVASITGGLAVQKQQRL---------------------LNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKC 343 (731)
T ss_pred HhccccCeEEEEeechhHHHHHHHH---------------------HhcCCCEEEecchHHHHHHHhhhhhhhhhhhceE
Confidence 8888899999999999988777554 344679999999999999975322 34888999
Q ss_pred EEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCc
Q 010028 240 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 319 (520)
Q Consensus 240 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 319 (520)
+|+||+|+|...++.+.+..+++.+... +.....|.+++|||++-..
T Consensus 344 LVlDEaDRmvekghF~Els~lL~~L~e~---------------------------------~~~~qrQTlVFSATlt~~~ 390 (731)
T KOG0347|consen 344 LVLDEADRMVEKGHFEELSKLLKHLNEE---------------------------------QKNRQRQTLVFSATLTLVL 390 (731)
T ss_pred EEEccHHHHhhhccHHHHHHHHHHhhhh---------------------------------hcccccceEEEEEEeehhh
Confidence 9999999999999999999999887631 1224568899999987321
Q ss_pred hh---------------------hhh-cc-cCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEE
Q 010028 320 NK---------------------LAQ-LD-LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 376 (520)
Q Consensus 320 ~~---------------------~~~-~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lI 376 (520)
.. +.. .+ -..|.++...+.. .....+......|+...|--+++.++..+ .+++||
T Consensus 391 ~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlV 468 (731)
T KOG0347|consen 391 QQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLV 468 (731)
T ss_pred cChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEeec-CCceEE
Confidence 11 111 12 2234555444433 23333344445555555655555555555 569999
Q ss_pred EecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHH
Q 010028 377 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 456 (520)
Q Consensus 377 f~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~ 456 (520)
|||+.+.+.+++.+|+..+ +....+|+.|.++.|.+.++.|++....|||||++.++|+|+|+++|||+|..|.+.+
T Consensus 469 F~NsId~vKRLt~~L~~L~---i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 469 FCNSIDCVKRLTVLLNNLD---IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545 (731)
T ss_pred EechHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccc
Confidence 9999999999999999765 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCC-CCCcccCCchhhhhhhhc
Q 010028 457 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND-SCPIHSIPSSLIESLRPV 514 (520)
Q Consensus 457 ~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 514 (520)
.|+||.||+.|.++.|..++++.+.++..|.++.+-+.+. ..|+.|+.....+.++.+
T Consensus 546 iYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeR 604 (731)
T KOG0347|consen 546 IYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKER 604 (731)
T ss_pred eeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHH
Confidence 9999999999999999999999999999999999988763 457788876666655443
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-47 Score=353.35 Aligned_cols=366 Identities=23% Similarity=0.342 Sum_probs=306.6
Q ss_pred ccCCc-ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHH
Q 010028 15 MRSPV-DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (520)
Q Consensus 15 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~ 93 (520)
..+|. ++++|++|. |.|++++.+..|+|..|+.+|..|++-++.. ..++++.++..|+|||.+|.+.++.+
T Consensus 82 pnsPlyS~ksFeeL~------LkPellkgly~M~F~kPskIQe~aLPlll~~--Pp~nlIaQsqsGtGKTaaFvL~MLsr 153 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELR------LKPELLKGLYAMKFQKPSKIQETALPLLLAE--PPQNLIAQSQSGTGKTAAFVLTMLSR 153 (477)
T ss_pred CCCCccccccHHhhC------CCHHHHhHHHHhccCCcchHHHhhcchhhcC--CchhhhhhhcCCCchhHHHHHHHHHh
Confidence 45555 578899999 9999999999999999999999998877652 24889999999999999999999998
Q ss_pred HhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEe
Q 010028 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGL 173 (520)
Q Consensus 94 l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (520)
+.-. ...+++++|+||++||.| +.+.+...++..++....
T Consensus 154 vd~~-~~~PQ~iCLaPtrELA~Q---------------------------------------~~eVv~eMGKf~~ita~y 193 (477)
T KOG0332|consen 154 VDPD-VVVPQCICLAPTRELAPQ---------------------------------------TGEVVEEMGKFTELTASY 193 (477)
T ss_pred cCcc-ccCCCceeeCchHHHHHH---------------------------------------HHHHHHHhcCceeeeEEE
Confidence 8655 467889999999999999 888888888877777777
Q ss_pred ccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHH-H
Q 010028 174 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-A 252 (520)
Q Consensus 174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-~ 252 (520)
...+....... .=..+|+|+||+.+.+++...+.+++.+++++|+|||+.|++. +
T Consensus 194 air~sk~~rG~------------------------~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG 249 (477)
T KOG0332|consen 194 AIRGSKAKRGN------------------------KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQG 249 (477)
T ss_pred EecCcccccCC------------------------cchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccc
Confidence 66554211110 0023799999999999998877788999999999999998864 4
Q ss_pred hhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCcee
Q 010028 253 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 332 (520)
Q Consensus 253 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~ 332 (520)
+++.-..|...++ +..|++++|||....+..++...+.++..
T Consensus 250 ~~D~S~rI~~~lP--------------------------------------~~~QllLFSATf~e~V~~Fa~kivpn~n~ 291 (477)
T KOG0332|consen 250 FQDQSIRIMRSLP--------------------------------------RNQQLLLFSATFVEKVAAFALKIVPNANV 291 (477)
T ss_pred ccccchhhhhhcC--------------------------------------CcceEEeeechhHHHHHHHHHHhcCCCce
Confidence 6666555555544 25689999999999999999999999888
Q ss_pred eecccccccCccccchhhh-hccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHH
Q 010028 333 LTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 411 (520)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~ 411 (520)
+........+. .+.++++ +.....|++.+.++.....-+..||||.+++.|.+++..++..| +.|..+||+|...
T Consensus 292 i~Lk~eel~L~-~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G---h~V~~l~G~l~~~ 367 (477)
T KOG0332|consen 292 IILKREELALD-NIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG---HQVSLLHGDLTVE 367 (477)
T ss_pred eeeehhhcccc-chhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcC---ceeEEeeccchhH
Confidence 77776665554 4455544 44567789999988777788899999999999999999999877 9999999999999
Q ss_pred HHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCC------CHHHHHHHHhhcccCCCCCcEEEEEecc-hHH
Q 010028 412 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAGRTARAGQLGRCFTLLHKD-EVK 484 (520)
Q Consensus 412 ~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~~~ 484 (520)
+|..++++|+.|..+|||+|++++||||++.+++||+||+|. +...|+||+||+||.|+.|.+|.+++.. +.+
T Consensus 368 ~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 368 QRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN 447 (477)
T ss_pred HHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHH
Confidence 999999999999999999999999999999999999999994 5789999999999999999999999886 456
Q ss_pred HHHHHHHHhc
Q 010028 485 RFKKLLQKAD 494 (520)
Q Consensus 485 ~~~~~~~~~~ 494 (520)
.++++.+.++
T Consensus 448 ~mn~iq~~F~ 457 (477)
T KOG0332|consen 448 IMNKIQKHFN 457 (477)
T ss_pred HHHHHHHHHh
Confidence 6667766664
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-46 Score=404.09 Aligned_cols=374 Identities=19% Similarity=0.239 Sum_probs=271.7
Q ss_pred CccCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHH
Q 010028 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (520)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~ 93 (520)
+...|.+...+.+.|. .+++.+.+++.+.||..|+++|.+||+.+.. |+|+++.+|||||||++|++|+++.
T Consensus 4 ~~~~p~~~a~~~~~~~----~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~ 75 (742)
T TIGR03817 4 VEHLPARAGRTAPWPA----WAHPDVVAALEAAGIHRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSA 75 (742)
T ss_pred eeecCCCCcccCCCCC----cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHH
Confidence 4566777777776663 2899999999999999999999999998775 9999999999999999999999999
Q ss_pred HhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEe
Q 010028 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGL 173 (520)
Q Consensus 94 l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (520)
+.+. ++.++||++||++|+.|+++.+++ +. ..++++..
T Consensus 76 l~~~--~~~~aL~l~PtraLa~q~~~~l~~---------------------------------------l~-~~~i~v~~ 113 (742)
T TIGR03817 76 LADD--PRATALYLAPTKALAADQLRAVRE---------------------------------------LT-LRGVRPAT 113 (742)
T ss_pred HhhC--CCcEEEEEcChHHHHHHHHHHHHH---------------------------------------hc-cCCeEEEE
Confidence 8764 467899999999999996555333 32 23678888
Q ss_pred ccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCC---CcccccccEEEeehHHHHHH
Q 010028 174 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR---GFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~---~~~~~~~~~lViDEah~l~~ 250 (520)
+.|+.+..++ ..+...++|+|+||+++...+.... ...++++++||+||||.+.+
T Consensus 114 ~~Gdt~~~~r----------------------~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 114 YDGDTPTEER----------------------RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred EeCCCCHHHH----------------------HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 8888764433 2233567999999999875432211 12378899999999999854
Q ss_pred HHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCc
Q 010028 251 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 330 (520)
Q Consensus 251 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~ 330 (520)
.++..+..+++++..... ......|++++|||++.... ........+
T Consensus 172 -~fg~~~~~il~rL~ri~~-------------------------------~~g~~~q~i~~SATi~n~~~-~~~~l~g~~ 218 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCA-------------------------------RYGASPVFVLASATTADPAA-AASRLIGAP 218 (742)
T ss_pred -ccHHHHHHHHHHHHHHHH-------------------------------hcCCCCEEEEEecCCCCHHH-HHHHHcCCC
Confidence 466666666665533110 01124589999999976544 444455555
Q ss_pred eeeecccccccCccccchhh---hhcc-----------CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcC-
Q 010028 331 LFLTTGETRYKLPERLESYK---LICE-----------SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG- 395 (520)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~---~~~~-----------~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~- 395 (520)
...............+.... .... ...+...+..++. .+.++||||+|++.++.++..|+...
T Consensus 219 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~ 296 (742)
T TIGR03817 219 VVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLG 296 (742)
T ss_pred eEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 43322111111000000000 0000 0112233444443 36799999999999999999987631
Q ss_pred ----CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCC
Q 010028 396 ----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 471 (520)
Q Consensus 396 ----~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~ 471 (520)
..+.++..+||++.+.+|.++++.|++|+.++||||+++++|||+|++++||+++.|.+...|+||+||+||.|+.
T Consensus 297 ~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~ 376 (742)
T TIGR03817 297 EVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQG 376 (742)
T ss_pred hhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCC
Confidence 1246788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecc--hHHHHHHHHHHhc
Q 010028 472 GRCFTLLHKD--EVKRFKKLLQKAD 494 (520)
Q Consensus 472 g~~i~~~~~~--~~~~~~~~~~~~~ 494 (520)
|.++++...+ |...++...+.++
T Consensus 377 g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 377 ALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred cEEEEEeCCChHHHHHHhCHHHHhc
Confidence 9999988643 4444444433333
No 30
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-47 Score=361.18 Aligned_cols=377 Identities=27% Similarity=0.438 Sum_probs=331.7
Q ss_pred CCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
.|-++.+|+++. .+..+..++.+..|.+|+|.|-++++..+ .+++++=.|.||||||.+|++|++-+++.
T Consensus 218 ~~rpvtsfeh~g------fDkqLm~airk~Ey~kptpiq~qalptal----sgrdvigIAktgSgktaAfi~pm~~himd 287 (731)
T KOG0339|consen 218 PPRPVTSFEHFG------FDKQLMTAIRKSEYEKPTPIQCQALPTAL----SGRDVIGIAKTGSGKTAAFIWPMIVHIMD 287 (731)
T ss_pred CCCCcchhhhcC------chHHHHHHHhhhhcccCCccccccccccc----ccccchheeeccCcchhHHHHHHHHHhcc
Confidence 344566777777 78999999999999999999999876554 49999999999999999999999999876
Q ss_pred hc----cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEE
Q 010028 97 RA----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVG 172 (520)
Q Consensus 97 ~~----~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (520)
+. ..++-.||++||++||.| +...+.++++..++++.
T Consensus 288 q~eL~~g~gPi~vilvPTrela~Q---------------------------------------i~~eaKkf~K~ygl~~v 328 (731)
T KOG0339|consen 288 QPELKPGEGPIGVILVPTRELASQ---------------------------------------IFSEAKKFGKAYGLRVV 328 (731)
T ss_pred hhhhcCCCCCeEEEEeccHHHHHH---------------------------------------HHHHHHHhhhhccceEE
Confidence 53 356789999999999999 77778888888999999
Q ss_pred eccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH
Q 010028 173 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 252 (520)
Q Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~ 252 (520)
+++||.+.+++.+.+ ..++.|+||||++|.+++.. +..++.++++||+||+++|++.+
T Consensus 329 ~~ygGgsk~eQ~k~L---------------------k~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmG 386 (731)
T KOG0339|consen 329 AVYGGGSKWEQSKEL---------------------KEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMG 386 (731)
T ss_pred EeecCCcHHHHHHhh---------------------hcCCeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccc
Confidence 999999999997664 35789999999999999987 56889999999999999999999
Q ss_pred hhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCcee
Q 010028 253 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 332 (520)
Q Consensus 253 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~ 332 (520)
|...++.|..+++. ..|.++||||....++.+.+..+.+|+.
T Consensus 387 fe~qVrSI~~hirp--------------------------------------drQtllFsaTf~~kIe~lard~L~dpVr 428 (731)
T KOG0339|consen 387 FEPQVRSIKQHIRP--------------------------------------DRQTLLFSATFKKKIEKLARDILSDPVR 428 (731)
T ss_pred cHHHHHHHHhhcCC--------------------------------------cceEEEeeccchHHHHHHHHHHhcCCee
Confidence 99999999998875 5688999999999999999999999988
Q ss_pred eecccccccCccccch-hhhhccCCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCH
Q 010028 333 LTTGETRYKLPERLES-YKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410 (520)
Q Consensus 333 ~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~ 410 (520)
+....-... ...+.+ ..++.....|+..+..-+... ..+++|||+.-...++.++..|.-.+ +.+..+||+|.+
T Consensus 429 vVqg~vgea-n~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~---~~v~llhgdkdq 504 (731)
T KOG0339|consen 429 VVQGEVGEA-NEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG---FNVSLLHGDKDQ 504 (731)
T ss_pred EEEeehhcc-ccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc---ceeeeecCchhh
Confidence 777644433 334444 445555666777776655554 67899999999999999999998655 899999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHH
Q 010028 411 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 490 (520)
Q Consensus 411 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~ 490 (520)
.+|.+++..|+++...|||+|+...+|+|++....||+||.-.+++.+.||+||+||.|..|.+++++...|..+.-.++
T Consensus 505 a~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LV 584 (731)
T KOG0339|consen 505 AERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLV 584 (731)
T ss_pred HHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcccCCchhhh
Q 010028 491 QKADNDSCPIHSIPSSLIE 509 (520)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~ 509 (520)
+.|++++ +-+|.++.+
T Consensus 585 nnLe~ag---QnVP~~l~d 600 (731)
T KOG0339|consen 585 NNLEGAG---QNVPDELMD 600 (731)
T ss_pred HHHhhcc---ccCChHHHH
Confidence 9999988 788888776
No 31
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-46 Score=348.31 Aligned_cols=358 Identities=27% Similarity=0.437 Sum_probs=303.6
Q ss_pred ccCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHH
Q 010028 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l 94 (520)
...|..+.+|-++. .+..+++.+++.|+.+|+|+|.+-++.++. |+|++=.|-||||||++|.+|++--.
T Consensus 163 d~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~ 232 (610)
T KOG0341|consen 163 DDIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFA 232 (610)
T ss_pred CCCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHH
Confidence 46778888999999 789999999999999999999998776554 99999999999999999999976544
Q ss_pred hhh-------ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhc--c
Q 010028 95 SNR-------AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIA--P 165 (520)
Q Consensus 95 ~~~-------~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 165 (520)
+.+ ...++.-||+||+++||.|.++-+..+ ...+. .
T Consensus 233 LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~-----------------------------------~~~L~e~g 277 (610)
T KOG0341|consen 233 LEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQY-----------------------------------VAALQEAG 277 (610)
T ss_pred HHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHH-----------------------------------HHHHHhcC
Confidence 332 235778999999999999977654332 22221 2
Q ss_pred cccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehH
Q 010028 166 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 245 (520)
Q Consensus 166 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 245 (520)
...++..+..||.+...+... +.++.+|+|+||++|.+++.. +..++.--.++++|||
T Consensus 278 ~P~lRs~LciGG~~v~eql~~---------------------v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEA 335 (610)
T KOG0341|consen 278 YPELRSLLCIGGVPVREQLDV---------------------VRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEA 335 (610)
T ss_pred ChhhhhhhhhcCccHHHHHHH---------------------HhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhH
Confidence 235788888999887777644 557899999999999999987 5567777789999999
Q ss_pred HHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhc
Q 010028 246 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 325 (520)
Q Consensus 246 h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 325 (520)
++|.+.+|.+.++.++...+. .+|.+++|||.+..+..+++.
T Consensus 336 DRmiDmGFEddir~iF~~FK~--------------------------------------QRQTLLFSATMP~KIQ~FAkS 377 (610)
T KOG0341|consen 336 DRMIDMGFEDDIRTIFSFFKG--------------------------------------QRQTLLFSATMPKKIQNFAKS 377 (610)
T ss_pred HHHhhccchhhHHHHHHHHhh--------------------------------------hhheeeeeccccHHHHHHHHh
Confidence 999999999999999998876 347899999999999999999
Q ss_pred ccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEec
Q 010028 326 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 405 (520)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~ 405 (520)
.+..|+.++.+..... .-++.+-...+..+.|.-++.+-+... ..++||||....++..+.++|--.| ..+..+|
T Consensus 378 ALVKPvtvNVGRAGAA-sldViQevEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKG---VEavaIH 452 (610)
T KOG0341|consen 378 ALVKPVTVNVGRAGAA-SLDVIQEVEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKG---VEAVAIH 452 (610)
T ss_pred hcccceEEeccccccc-chhHHHHHHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHcc---ceeEEee
Confidence 9999999988876533 333444445566677877777766655 4589999999999999999987655 7889999
Q ss_pred cccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 406 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 406 ~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
|+-++.+|...++.|+.|+-+|||+|++.+.|+|+|++.||||||+|..+.+|+||+||+||.|+.|.+.+|+++..
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999853
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-45 Score=344.97 Aligned_cols=369 Identities=26% Similarity=0.450 Sum_probs=324.6
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
..+|+++. |.+++++.+...||.+|+.+|++||.- ...|.|+.+.+.+|+|||.++.+++++.+.-. ..
T Consensus 25 vdsfddm~------L~e~LLrgiy~yGFekPSaIQqraI~p----~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-~k 93 (397)
T KOG0327|consen 25 VDSFDDMN------LKESLLRGIYAYGFEKPSAIQQRAILP----CIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-VK 93 (397)
T ss_pred hhhhhhcC------CCHHHHhHHHhhccCCchHHHhccccc----cccCCceeEeeeccccchhhhHHHHHhhcCcc-hH
Confidence 34788888 999999999999999999999998654 44599999999999999999999999886433 34
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
...+++++|+++||.| +....+.++...+.++....|+.+.
T Consensus 94 e~qalilaPtreLa~q---------------------------------------i~~v~~~lg~~~~~~v~~~igg~~~ 134 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQ---------------------------------------IQKVVRALGDHMDVSVHACIGGTNV 134 (397)
T ss_pred HHHHHHhcchHHHHHH---------------------------------------HHHHHHhhhcccceeeeeecCcccc
Confidence 5679999999999999 7788888888889999999999887
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+...+ ....++|+++||++....+... .+....+++.|+||++.+++.++.+.+..+
T Consensus 135 ~~~~~~i--------------------~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~i 193 (397)
T KOG0327|consen 135 RREDQAL--------------------LKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDI 193 (397)
T ss_pred hhhhhhh--------------------hccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHH
Confidence 7554443 2246799999999999999875 566778999999999999999999999999
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 340 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (520)
+++++. .+|++++|||.+.......+.+..+|..+...-+..
T Consensus 194 f~~lp~--------------------------------------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~l 235 (397)
T KOG0327|consen 194 FQELPS--------------------------------------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDEL 235 (397)
T ss_pred HHHcCc--------------------------------------chhheeecccCcHHHHHHHHHhccCceEEEecchhh
Confidence 999875 568999999999999999999999999887766653
Q ss_pred cCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH
Q 010028 341 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f 420 (520)
. ...+.+++.....+.|.+.+..+.+ .-...+||||++..+..+...|..++ +.+..+|++|.+.+|..+++.|
T Consensus 236 t-l~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~---~~~s~~~~d~~q~~R~~~~~ef 309 (397)
T KOG0327|consen 236 T-LEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHG---FTVSAIHGDMEQNERDTLMREF 309 (397)
T ss_pred h-hhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCC---ceEEEeecccchhhhhHHHHHh
Confidence 3 5677788888888889999999888 55688999999999999999997665 8999999999999999999999
Q ss_pred HcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCCc
Q 010028 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 500 (520)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (520)
+.|..+|||.|+.+++|+|+..+++||+|+.|.....|+||+||+||.|+.|.++.++...+...++++.+.+.- ++
T Consensus 310 ~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~---~i 386 (397)
T KOG0327|consen 310 RSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNT---PI 386 (397)
T ss_pred hcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCC---cc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876653 44
Q ss_pred ccCCchh
Q 010028 501 HSIPSSL 507 (520)
Q Consensus 501 ~~~~~~~ 507 (520)
+.+|.+.
T Consensus 387 ~e~p~~~ 393 (397)
T KOG0327|consen 387 EELPSNF 393 (397)
T ss_pred eecccch
Confidence 5556543
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-45 Score=379.45 Aligned_cols=385 Identities=29% Similarity=0.488 Sum_probs=331.2
Q ss_pred cCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..|..+.+|.+++ ++..++..++++||..|+++|.+||+++.. |+++|.+|-||||||++|++|++.+.+
T Consensus 359 ~~pkpv~sW~q~g------l~~~il~tlkkl~y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~ 428 (997)
T KOG0334|consen 359 ECPKPVTSWTQCG------LSSKILETLKKLGYEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIK 428 (997)
T ss_pred CCCcccchHhhCC------chHHHHHHHHHhcCCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhh
Confidence 6788999999999 999999999999999999999999887765 999999999999999999999997765
Q ss_pred hhc----cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceE
Q 010028 96 NRA----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 171 (520)
Q Consensus 96 ~~~----~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (520)
.+. ..|+-+||++||++|+.| +.+.+..++...++++
T Consensus 429 dQr~~~~gdGPi~li~aPtrela~Q---------------------------------------I~r~~~kf~k~l~ir~ 469 (997)
T KOG0334|consen 429 DQRPLEEGDGPIALILAPTRELAMQ---------------------------------------IHREVRKFLKLLGIRV 469 (997)
T ss_pred cCCChhhCCCceEEEEcCCHHHHHH---------------------------------------HHHHHHHHHhhcCceE
Confidence 432 357889999999999999 6666777777789999
Q ss_pred EeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhc--CCCcccccccEEEeehHHHHH
Q 010028 172 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA--TRGFTLEHLCYLVVDETDRLL 249 (520)
Q Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~--~~~~~~~~~~~lViDEah~l~ 249 (520)
.+.+|+.....++..+ .+++.|+||||+++++.+.. ++..++.+..++|+||||+|+
T Consensus 470 v~vygg~~~~~qiael---------------------kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmf 528 (997)
T KOG0334|consen 470 VCVYGGSGISQQIAEL---------------------KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMF 528 (997)
T ss_pred EEecCCccHHHHHHHH---------------------hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhh
Confidence 9999999988887654 45789999999999988754 344567777799999999999
Q ss_pred HHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCC
Q 010028 250 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 329 (520)
Q Consensus 250 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~ 329 (520)
+.+|...+..|++.++. ..|.+++|||++..+..+....+..
T Consensus 529 dmgfePq~~~Ii~nlrp--------------------------------------drQtvlfSatfpr~m~~la~~vl~~ 570 (997)
T KOG0334|consen 529 DMGFEPQITRILQNLRP--------------------------------------DRQTVLFSATFPRSMEALARKVLKK 570 (997)
T ss_pred eeccCcccchHHhhcch--------------------------------------hhhhhhhhhhhhHHHHHHHHHhhcC
Confidence 99998888888888754 4588999999998888899888888
Q ss_pred ceeeecccccccCccccchhhhhcc-CCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccc
Q 010028 330 PLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 407 (520)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~ 407 (520)
|+.+.+.... .+...+.+...++. ...|+..|.+++... ...++||||.+...|..+.+.|.+.+ +....+||+
T Consensus 571 Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag---~~~~slHGg 646 (997)
T KOG0334|consen 571 PVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAG---YNCDSLHGG 646 (997)
T ss_pred CeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcC---cchhhhcCC
Confidence 8886666443 45556666555555 888999999988764 67899999999999999999999766 666669999
Q ss_pred cCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHH
Q 010028 408 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487 (520)
Q Consensus 408 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~ 487 (520)
-+..+|+.++++|++|...+||+|+.+++|+|+..+.+||+|+.|.-...|+||+||+||.|+.|.+++|+.+.+.+...
T Consensus 647 v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~ 726 (997)
T KOG0334|consen 647 VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAG 726 (997)
T ss_pred CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcccCCchhhhhhhhccc
Q 010028 488 KLLQKADNDSCPIHSIPSSLIESLRPVYK 516 (520)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (520)
.|++.++..+ .++| .++..+...|+
T Consensus 727 dl~~al~~~~---~~~P-~~l~~l~~~f~ 751 (997)
T KOG0334|consen 727 DLCKALELSK---QPVP-KLLQALSERFK 751 (997)
T ss_pred HHHHHHHhcc---CCCc-hHHHHHHHHHH
Confidence 9999997766 4455 44444444433
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-44 Score=371.30 Aligned_cols=335 Identities=22% Similarity=0.338 Sum_probs=247.3
Q ss_pred HCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 45 ~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.+||..|+|+|.++|+.++. ++|+++.+|||+|||++|++|++. .+..+||++|+++|+.|+++.++.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~-------~~~~~lVi~P~~~L~~dq~~~l~~- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC-------SDGITLVISPLISLMEDQVLQLKA- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH-------cCCcEEEEecHHHHHHHHHHHHHH-
Confidence 47999999999999998876 889999999999999999999875 234799999999999996554322
Q ss_pred cccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhH
Q 010028 125 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 204 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (520)
.++.+..+.++.........+.
T Consensus 74 ------------------------------------------~gi~~~~l~~~~~~~~~~~i~~---------------- 95 (470)
T TIGR00614 74 ------------------------------------------SGIPATFLNSSQSKEQQKNVLT---------------- 95 (470)
T ss_pred ------------------------------------------cCCcEEEEeCCCCHHHHHHHHH----------------
Confidence 2566677777665443322211
Q ss_pred HHhhccCCcEEEeCchHHHHHHhcCCCc-ccccccEEEeehHHHHHHHH--hhhhHHHHHHhhccCcccccccccccccc
Q 010028 205 LQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPS 281 (520)
Q Consensus 205 ~~~~~~~~~Ili~Tp~~l~~~l~~~~~~-~~~~~~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 281 (520)
......++|+++||+.+.....-...+ ....+++|||||||++.+++ +......+......
T Consensus 96 -~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~--------------- 159 (470)
T TIGR00614 96 -DLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK--------------- 159 (470)
T ss_pred -HHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH---------------
Confidence 112345799999999874321000011 45778999999999987543 22332222211111
Q ss_pred cccchhhhcccccccCCCCCCccchheeeecccccCCchhh--hhcccCCceeeecccccccCccccchhhhhccCCCcH
Q 010028 282 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL--AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 359 (520)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 359 (520)
.+..+++++|||++...... ....+.+|.++.......... +..........
T Consensus 160 ---------------------~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~-----~~v~~~~~~~~ 213 (470)
T TIGR00614 160 ---------------------FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLY-----YEVRRKTPKIL 213 (470)
T ss_pred ---------------------cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcE-----EEEEeCCccHH
Confidence 13457899999997654432 223455665554443332221 11111112334
Q ss_pred HHHHHHHH-hcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCC
Q 010028 360 LYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 438 (520)
Q Consensus 360 ~~l~~~~~-~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (520)
+.+...+. ...++++||||+++++++.++..|+..+ +.+..+||+|+..+|.++++.|++|+.+|||||+++++||
T Consensus 214 ~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g---~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GI 290 (470)
T TIGR00614 214 EDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG---IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGI 290 (470)
T ss_pred HHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC---CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccC
Confidence 45555555 4566678999999999999999999765 7899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhc
Q 010028 439 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 494 (520)
Q Consensus 439 dl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~ 494 (520)
|+|++++||++++|.|...|+||+||+||.|..|.|++|+...|...+++++....
T Consensus 291 D~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~ 346 (470)
T TIGR00614 291 NKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEP 346 (470)
T ss_pred CcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998888876433
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-44 Score=349.80 Aligned_cols=386 Identities=29% Similarity=0.414 Sum_probs=312.9
Q ss_pred CCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
.|..+.+|.++..++. .++.++..+...+|..|++.|.+|++.++. +++++.|||||+|||++|.+|++.++..
T Consensus 127 ~~~~l~~f~~lt~~~~--~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~ 200 (593)
T KOG0344|consen 127 LPPPLLSFSDLTYDYS--MNKRLLENLQELGFDEPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKD 200 (593)
T ss_pred CCCccccccccchhhh--hcHHHHHhHhhCCCCCCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHH
Confidence 4666777777766555 688999999999999999999999887665 9999999999999999999999999987
Q ss_pred hc----cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEE
Q 010028 97 RA----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVG 172 (520)
Q Consensus 97 ~~----~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (520)
.. ..+.+++|+.|+++|+.|++.+..++.-. .....++.
T Consensus 201 ~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~-------------------------------------~~t~~~a~ 243 (593)
T KOG0344|consen 201 LSQEKHKVGLRALILSPTRELAAQIYREMRKYSID-------------------------------------EGTSLRAA 243 (593)
T ss_pred hhcccCccceEEEEecchHHHHHHHHHHHHhcCCC-------------------------------------CCCchhhh
Confidence 65 45678999999999999977776665310 22233333
Q ss_pred eccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCC-CcccccccEEEeehHHHHHHH
Q 010028 173 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 251 (520)
Q Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~l~~~ 251 (520)
.+.......+.... .....++|+++||-++...+.... ..++.++..+|+||+|.++..
T Consensus 244 ~~~~~~~~~qk~a~--------------------~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 244 QFSKPAYPSQKPAF--------------------LSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred hcccccchhhccch--------------------hHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 33222211111100 011235899999999988887633 367899999999999999998
Q ss_pred -HhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCc
Q 010028 252 -AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 330 (520)
Q Consensus 252 -~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~ 330 (520)
.+..++-.|+..+.. +.+.+-++|||.+..++.+......++
T Consensus 304 ~~f~~Qla~I~sac~s-------------------------------------~~i~~a~FSat~~~~VEE~~~~i~~~~ 346 (593)
T KOG0344|consen 304 EFFVEQLADIYSACQS-------------------------------------PDIRVALFSATISVYVEEWAELIKSDL 346 (593)
T ss_pred hhHHHHHHHHHHHhcC-------------------------------------cchhhhhhhccccHHHHHHHHHhhccc
Confidence 788888888877655 445678899999999999999888888
Q ss_pred eeeecccccccCccccch-hhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccC
Q 010028 331 LFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 409 (520)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~ 409 (520)
..+.++...... ..+.+ .........|+..+.+++...-...+|||+.+.+.|..+...|.. ..++.+..+||..+
T Consensus 347 ~~vivg~~~sa~-~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--~~~i~v~vIh~e~~ 423 (593)
T KOG0344|consen 347 KRVIVGLRNSAN-ETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--YDNINVDVIHGERS 423 (593)
T ss_pred eeEEEecchhHh-hhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--ccCcceeeEecccc
Confidence 877776654333 33333 445556778888999999888778999999999999999999953 44588999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHH
Q 010028 410 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 489 (520)
Q Consensus 410 ~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~ 489 (520)
+.+|++.+++|+.|++.+|+||+++++|+|+.+++.||+||.|.+..+|+||+||+||.|+.|.+++|+...|.+.++.+
T Consensus 424 ~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~i 503 (593)
T KOG0344|consen 424 QKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSI 503 (593)
T ss_pred hhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcccCCchhh
Q 010028 490 LQKADNDSCPIHSIPSSLI 508 (520)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ 508 (520)
++-+..++ .++|+.+.
T Consensus 504 ae~~~~sG---~evpe~~m 519 (593)
T KOG0344|consen 504 AEVMEQSG---CEVPEKIM 519 (593)
T ss_pred HHHHHHcC---CcchHHHH
Confidence 99998888 45555443
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.7e-43 Score=374.21 Aligned_cols=345 Identities=20% Similarity=0.272 Sum_probs=254.8
Q ss_pred CCHHHHHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
....+...+.. ||+..+++.|.++|+.++. |+|+++.+|||+|||++|++|++. .++.+|||+|+++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~-------~~GiTLVISPLiSL 512 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI-------CPGITLVISPLVSL 512 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH-------cCCcEEEEeCHHHH
Confidence 55677777765 8999999999999998876 999999999999999999999985 23479999999999
Q ss_pred HHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccc
Q 010028 114 ALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193 (520)
Q Consensus 114 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 193 (520)
+.+++..+ .. .++....+.++.....+...+...
T Consensus 513 mqDQV~~L--------------------------------------~~-----~GI~Aa~L~s~~s~~eq~~ilr~l--- 546 (1195)
T PLN03137 513 IQDQIMNL--------------------------------------LQ-----ANIPAASLSAGMEWAEQLEILQEL--- 546 (1195)
T ss_pred HHHHHHHH--------------------------------------Hh-----CCCeEEEEECCCCHHHHHHHHHHH---
Confidence 98753332 11 267888888887766554432210
Q ss_pred cccccCCchhHHHhhccCCcEEEeCchHHHH---HHhcCCC-cccccccEEEeehHHHHHHHH--hhhhHHHHHHhhccC
Q 010028 194 EAGICYDPEDVLQELQSAVDILVATPGRLMD---HINATRG-FTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSD 267 (520)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~---~l~~~~~-~~~~~~~~lViDEah~l~~~~--~~~~l~~i~~~~~~~ 267 (520)
......++|+++||+++.. ++..... .....+.+|||||||++++++ |......+-.....
T Consensus 547 ------------~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~- 613 (1195)
T PLN03137 547 ------------SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK- 613 (1195)
T ss_pred ------------HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh-
Confidence 0112467999999999752 1221111 113457899999999998765 33333322111110
Q ss_pred cccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhh--cccCCceeeecccccccCccc
Q 010028 268 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPER 345 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~ 345 (520)
.+..+++++|||.+........ ..+..+.++.......++
T Consensus 614 -----------------------------------fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL--- 655 (1195)
T PLN03137 614 -----------------------------------FPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNL--- 655 (1195)
T ss_pred -----------------------------------CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccce---
Confidence 1345789999999876554222 334445444433332221
Q ss_pred cchhhhhccCCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC
Q 010028 346 LESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424 (520)
Q Consensus 346 ~~~~~~~~~~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~ 424 (520)
.+.+..........+..++... .+..+||||++++.++.++..|...+ +.+..+||+|+..+|..+++.|..|+
T Consensus 656 --~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G---ika~~YHAGLs~eeR~~vqe~F~~Ge 730 (1195)
T PLN03137 656 --WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG---HKAAFYHGSMDPAQRAFVQKQWSKDE 730 (1195)
T ss_pred --EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC---CCeeeeeCCCCHHHHHHHHHHHhcCC
Confidence 1111111112234455555443 46789999999999999999999776 88999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHH
Q 010028 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 492 (520)
Q Consensus 425 ~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~ 492 (520)
.+|||||.++++|||+|++++||+|++|.|...|+|++||+||.|..|.|++|+...|...++.++.+
T Consensus 731 i~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 731 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred CcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998864
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.7e-43 Score=371.78 Aligned_cols=341 Identities=22% Similarity=0.305 Sum_probs=253.2
Q ss_pred CCHHHHHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
.+......+.+ +||..|+|+|.++++.+++ ++|+++.+|||+|||++|++|++.. ...+||++|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHH
Confidence 44445556655 8999999999999998876 8999999999999999999998852 3479999999999
Q ss_pred HHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccc
Q 010028 114 ALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193 (520)
Q Consensus 114 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 193 (520)
+.|+++.++.. ++.+.++.++.........+..
T Consensus 78 ~~dqv~~l~~~-------------------------------------------gi~~~~~~s~~~~~~~~~~~~~---- 110 (607)
T PRK11057 78 MKDQVDQLLAN-------------------------------------------GVAAACLNSTQTREQQLEVMAG---- 110 (607)
T ss_pred HHHHHHHHHHc-------------------------------------------CCcEEEEcCCCCHHHHHHHHHH----
Confidence 99965543221 5666666666554444322111
Q ss_pred cccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH--hhhhHHHHHHhhccCcccc
Q 010028 194 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENR 271 (520)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~~ 271 (520)
......+++++||+.+...... ..+...+++++||||||++.+++ +......+-.....
T Consensus 111 -------------~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~----- 171 (607)
T PRK11057 111 -------------CRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR----- 171 (607)
T ss_pred -------------HhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh-----
Confidence 1123578999999998532111 11234568999999999987643 22222222111110
Q ss_pred cccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchh--hhhcccCCceeeecccccccCccccchh
Q 010028 272 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESY 349 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 349 (520)
.+..+++++|||++..... .....+.+|.+.......... .
T Consensus 172 -------------------------------~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl------~ 214 (607)
T PRK11057 172 -------------------------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI------R 214 (607)
T ss_pred -------------------------------CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc------e
Confidence 1345789999999866543 222344556554433322221 1
Q ss_pred hhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEE
Q 010028 350 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429 (520)
Q Consensus 350 ~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (520)
+.......+...+...+....++++||||+|+++++.++..|+..+ +.+..+|++|+..+|.++++.|+.|+.+|||
T Consensus 215 ~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g---~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLV 291 (607)
T PRK11057 215 YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRG---ISAAAYHAGLDNDVRADVQEAFQRDDLQIVV 291 (607)
T ss_pred eeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 1122233455667777777788899999999999999999999765 8899999999999999999999999999999
Q ss_pred EecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHH
Q 010028 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 492 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~ 492 (520)
||+++++|||+|++++||++++|.|...|+||+||+||.|..|.|++|++..|...++++++.
T Consensus 292 aT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 292 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred EechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999888887753
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.8e-44 Score=351.57 Aligned_cols=375 Identities=26% Similarity=0.415 Sum_probs=316.8
Q ss_pred CcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
|.....|+++. |-..++..|...+|..|++.|..||+.+.. +=|++|+|..|+|||++|...+++.+...
T Consensus 21 ~~~~~~fe~l~------l~r~vl~glrrn~f~~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~ 90 (980)
T KOG4284|consen 21 SNCTPGFEQLA------LWREVLLGLRRNAFALPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSR 90 (980)
T ss_pred cCCCCCHHHHH------HHHHHHHHHHhhcccCCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcc
Confidence 44455677777 788899999988999999999999887665 78999999999999999998888887654
Q ss_pred ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc-ccceEEeccC
Q 010028 98 AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVG 176 (520)
Q Consensus 98 ~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g 176 (520)
......+||+|||++|.| +...+..++.. .+.++..+.|
T Consensus 91 -~~~~q~~Iv~PTREiaVQ---------------------------------------I~~tv~~v~~sf~g~~csvfIG 130 (980)
T KOG4284|consen 91 -SSHIQKVIVTPTREIAVQ---------------------------------------IKETVRKVAPSFTGARCSVFIG 130 (980)
T ss_pred -cCcceeEEEecchhhhhH---------------------------------------HHHHHHHhcccccCcceEEEec
Confidence 356789999999999999 66677777654 4899999999
Q ss_pred ccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhh
Q 010028 177 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQA 255 (520)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~ 255 (520)
|+........+ ..++|+||||+++..++.. +.++.++++++|+||||.+.+ .+|..
T Consensus 131 GT~~~~d~~rl----------------------k~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADkL~~t~sfq~ 187 (980)
T KOG4284|consen 131 GTAHKLDLIRL----------------------KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADKLMDTESFQD 187 (980)
T ss_pred Cchhhhhhhhh----------------------hhceEEecCchHHHHHHHh-cCCCccceeEEEeccHHhhhchhhHHH
Confidence 99877765443 3568999999999998886 668899999999999999987 77888
Q ss_pred hHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeec
Q 010028 256 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 335 (520)
Q Consensus 256 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~ 335 (520)
.+.-|+..++. ..|++.+|||.+.+.++.+..++++|.++..
T Consensus 188 ~In~ii~slP~--------------------------------------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~ 229 (980)
T KOG4284|consen 188 DINIIINSLPQ--------------------------------------IRQVAAFSATYPRNLDNLLSKFMRDPALVRF 229 (980)
T ss_pred HHHHHHHhcch--------------------------------------hheeeEEeccCchhHHHHHHHHhcccceeec
Confidence 89888888775 3479999999999999999999999999888
Q ss_pred ccccccCccccchhhhhccCC--------CcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccc
Q 010028 336 GETRYKLPERLESYKLICESK--------LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 407 (520)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~--------~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~ 407 (520)
..+...+ -.+.++....... .|+..|.+++...+-.++||||+....|+.++..|...| +.+.++.|.
T Consensus 230 n~~d~~L-~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG---~d~~~ISga 305 (980)
T KOG4284|consen 230 NADDVQL-FGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSG---LDVTFISGA 305 (980)
T ss_pred ccCCcee-echhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccC---CCeEEeccc
Confidence 7765443 3344544333322 367778888899899999999999999999999999877 899999999
Q ss_pred cCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchH-HHH
Q 010028 408 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-KRF 486 (520)
Q Consensus 408 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~-~~~ 486 (520)
|++++|..+++.++.-..+|||+|+..++|||-+++++||+.|.|.+...|.|||||+||.|-.|.+++|+..... +.|
T Consensus 306 M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f 385 (980)
T KOG4284|consen 306 MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGF 385 (980)
T ss_pred cchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887544 444
Q ss_pred ----HHHHHHhcCCCCCcccCCchh
Q 010028 487 ----KKLLQKADNDSCPIHSIPSSL 507 (520)
Q Consensus 487 ----~~~~~~~~~~~~~~~~~~~~~ 507 (520)
.++.......-.|-+++|.++
T Consensus 386 ~~m~~ria~~~~~~~~p~~p~P~~~ 410 (980)
T KOG4284|consen 386 TAMAYRIAVTVKRVVEPVHPLPGDL 410 (980)
T ss_pred HHHHHHHhhhheeeeccCCCCCccc
Confidence 455555555555667777766
No 39
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-43 Score=332.03 Aligned_cols=362 Identities=30% Similarity=0.424 Sum_probs=322.3
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
...|..++ |+....+++.+-||+.|+|.|++.++.++. +++++-.+-||||||.++++|+++++......
T Consensus 20 ~g~fqsmg------L~~~v~raI~kkg~~~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~ 89 (529)
T KOG0337|consen 20 SGGFQSMG------LDYKVLRAIHKKGFNTPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQT 89 (529)
T ss_pred CCCccccC------CCHHHHHHHHHhhcCCCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhcccc
Confidence 57788888 999999999999999999999998766554 99999999999999999999999999877556
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
+.+++++.||++|+.| ..+....++...+++..+++|+...
T Consensus 90 g~RalilsptreLa~q---------------------------------------tlkvvkdlgrgt~lr~s~~~ggD~~ 130 (529)
T KOG0337|consen 90 GLRALILSPTRELALQ---------------------------------------TLKVVKDLGRGTKLRQSLLVGGDSI 130 (529)
T ss_pred ccceeeccCcHHHHHH---------------------------------------HHHHHHHhccccchhhhhhcccchH
Confidence 7899999999999999 8888888999999999999999888
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
.++... +..++||+++||+++....-. ..+.++.+.+|||||++.++.++|.+.+..+
T Consensus 131 eeqf~~---------------------l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~ 188 (529)
T KOG0337|consen 131 EEQFIL---------------------LNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEI 188 (529)
T ss_pred HHHHHH---------------------hccCCCEEEecCceeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHH
Confidence 777654 456789999999998665543 2367899999999999999999999999999
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 340 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (520)
+..++. ..|.++||||++...-.+.+.++.+|..+....+ .
T Consensus 189 l~rl~~--------------------------------------~~QTllfSatlp~~lv~fakaGl~~p~lVRldve-t 229 (529)
T KOG0337|consen 189 LSRLPE--------------------------------------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE-T 229 (529)
T ss_pred HHhCCC--------------------------------------cceEEEEeccCchhhHHHHHccCCCCceEEeehh-h
Confidence 998875 3378999999999999999999999998875443 3
Q ss_pred cCccccchhhhhccCCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHH
Q 010028 341 KLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~ 419 (520)
.+.+.....+..+....|...|..++... ..++++|||++..+++.+...|+..+ .....++|.+++.-|.....+
T Consensus 230 kise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g---~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 230 KISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG---GEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred hcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcC---CCccccccccChHhhhhcccc
Confidence 66777788888888999999999988876 45689999999999999999999876 788889999999999999999
Q ss_pred HHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
|+.++..+||+|+...+|+|+|.++.||+||.|.+...|.||+||+.|.|+.|..+.++.+.+...+-.+--.+.+
T Consensus 307 F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 307 FRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877666655
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.1e-41 Score=372.58 Aligned_cols=372 Identities=20% Similarity=0.245 Sum_probs=256.5
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-----cccccEEEEcC
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLP 109 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-----~~~~~vlil~P 109 (520)
+++.+.+.+.+ +|..|+++|.+||+.+.. |++++++||||||||+++++|+++.+.... ..+.++||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcC
Confidence 77888888877 688999999999998765 899999999999999999999999886531 23567999999
Q ss_pred CHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-cceEEeccCccchHHHHHHHh
Q 010028 110 TRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELI 188 (520)
Q Consensus 110 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~ 188 (520)
+++|+.|+++.+.+.+.. +.......+... ++++...+|+.+...+...
T Consensus 93 traLa~di~~~L~~~l~~----------------------------i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~-- 142 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTE----------------------------IREIAKERGEELPEIRVAIRTGDTSSYEKQKM-- 142 (876)
T ss_pred HHHHHHHHHHHHHHHHHH----------------------------HHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH--
Confidence 999999987775443110 222233333333 7889999999876655433
Q ss_pred hcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC-cccccccEEEeehHHHHHHHHhhhhHHHHHHhhccC
Q 010028 189 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 267 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 267 (520)
+..+++|+||||+++..++...+. ..++++++|||||+|.+.+...+..+...++++...
T Consensus 143 -------------------l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l 203 (876)
T PRK13767 143 -------------------LKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEEL 203 (876)
T ss_pred -------------------HhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHh
Confidence 334679999999999877765322 247889999999999998766666666666554431
Q ss_pred cccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccC-------Cceeeecccccc
Q 010028 268 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-------HPLFLTTGETRY 340 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~-------~~~~~~~~~~~~ 340 (520)
. ....|.+++|||+.+ .......... .+..+.......
T Consensus 204 ~----------------------------------~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k 248 (876)
T PRK13767 204 A----------------------------------GGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVK 248 (876)
T ss_pred c----------------------------------CCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCc
Confidence 1 024578999999864 3333222111 111111110000
Q ss_pred cCccccch---hhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCC---CceeEEEeccccCHHH
Q 010028 341 KLPERLES---YKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSV 412 (520)
Q Consensus 341 ~~~~~~~~---~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~---~~~~v~~~~~~~~~~~ 412 (520)
.....+.. .............+...+... .++++||||+|++.|+.++..|+.... .+..+..+||+++..+
T Consensus 249 ~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 249 PFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREV 328 (876)
T ss_pred cceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHH
Confidence 00000000 000011111112222222221 357899999999999999999987321 2357899999999999
Q ss_pred HHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCC-CCCcEEEEE-ecchHHHHHHHH
Q 010028 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLL-HKDEVKRFKKLL 490 (520)
Q Consensus 413 r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~-~~g~~i~~~-~~~~~~~~~~~~ 490 (520)
|..+++.|++|+.++||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.+.++. +..+.-....++
T Consensus 329 R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~ 408 (876)
T PRK13767 329 RLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLL 408 (876)
T ss_pred HHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999874 334444443 334444433344
Q ss_pred HHhcC
Q 010028 491 QKADN 495 (520)
Q Consensus 491 ~~~~~ 495 (520)
+.+..
T Consensus 409 ~~~~~ 413 (876)
T PRK13767 409 KKARE 413 (876)
T ss_pred HHHHh
Confidence 44443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.3e-42 Score=364.98 Aligned_cols=335 Identities=20% Similarity=0.298 Sum_probs=251.2
Q ss_pred HHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHh
Q 010028 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 119 (520)
Q Consensus 41 ~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~ 119 (520)
+.|.+ |||..+++.|.++|+.++. |+|+++.+|||+|||++|++|++. .+..++|++|+++|+.|+++
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~-------~~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALL-------LKGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHH
Confidence 34544 8999999999999998876 899999999999999999999874 23468999999999999655
Q ss_pred hhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccC
Q 010028 120 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 199 (520)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 199 (520)
.++++ ++.+..++++.+.......+.
T Consensus 72 ~l~~~-------------------------------------------gi~~~~~~s~~~~~~~~~~~~----------- 97 (591)
T TIGR01389 72 QLRAA-------------------------------------------GVAAAYLNSTLSAKEQQDIEK----------- 97 (591)
T ss_pred HHHHc-------------------------------------------CCcEEEEeCCCCHHHHHHHHH-----------
Confidence 43221 566777777766554432211
Q ss_pred CchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH--hhhhHHHHHHhhccCcccccccccc
Q 010028 200 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDAST 277 (520)
Q Consensus 200 ~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~ 277 (520)
.......+|+++||+++...... ......+++++||||||++..++ +......+......
T Consensus 98 ------~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~----------- 159 (591)
T TIGR01389 98 ------ALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER----------- 159 (591)
T ss_pred ------HHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh-----------
Confidence 12234679999999998543222 12345678999999999986543 22323333222111
Q ss_pred cccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhc--ccCCceeeecccccccCccccchhhhhccC
Q 010028 278 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICES 355 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (520)
.+..+++++|||.+......... .+.++..+......... .+.....
T Consensus 160 -------------------------~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl------~~~v~~~ 208 (591)
T TIGR01389 160 -------------------------FPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNL------RFSVVKK 208 (591)
T ss_pred -------------------------CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCc------EEEEEeC
Confidence 12335899999988665543322 33344433322222111 1222233
Q ss_pred CCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccc
Q 010028 356 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 435 (520)
Q Consensus 356 ~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (520)
..+...+...+....++++||||++++.++.+++.|...+ +.+..+||+|+..+|..+.+.|.+|+++|||||++++
T Consensus 209 ~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g---~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~ 285 (591)
T TIGR01389 209 NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQG---ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFG 285 (591)
T ss_pred CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhh
Confidence 4566677777877778899999999999999999998765 7889999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHH
Q 010028 436 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 492 (520)
Q Consensus 436 ~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~ 492 (520)
+|||+|++++||++++|.|...|.|++||+||.|..|.|+++++..|...++.++++
T Consensus 286 ~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 286 MGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred ccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998888877754
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-41 Score=368.33 Aligned_cols=376 Identities=23% Similarity=0.305 Sum_probs=264.3
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccc
Q 010028 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (520)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~ 102 (520)
.|++++ |++.+.+++.+.|+..|+|+|.+|++..+. ++++++++||||+|||+++.+++++.+.. +.
T Consensus 2 ~~~~l~------lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~---~g~nvlv~APTGSGKTlia~lail~~l~~----~~ 68 (737)
T PRK02362 2 KIAELP------LPEGVIEFYEAEGIEELYPPQAEAVEAGLL---DGKNLLAAIPTASGKTLIAELAMLKAIAR----GG 68 (737)
T ss_pred ChhhcC------CCHHHHHHHHhCCCCcCCHHHHHHHHHHHh---CCCcEEEECCCcchHHHHHHHHHHHHHhc----CC
Confidence 356666 899999999999999999999999987433 58999999999999999999999988753 45
Q ss_pred cEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHH
Q 010028 103 RALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIAD 182 (520)
Q Consensus 103 ~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 182 (520)
++||++|+++|+.|.++. +..+.. .++++..++|+.....
T Consensus 69 kal~i~P~raLa~q~~~~---------------------------------------~~~~~~-~g~~v~~~tGd~~~~~ 108 (737)
T PRK02362 69 KALYIVPLRALASEKFEE---------------------------------------FERFEE-LGVRVGISTGDYDSRD 108 (737)
T ss_pred cEEEEeChHHHHHHHHHH---------------------------------------HHHhhc-CCCEEEEEeCCcCccc
Confidence 899999999999995554 333322 3688888888754322
Q ss_pred HHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHH
Q 010028 183 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262 (520)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~ 262 (520)
. ....++|+|+||+++..++.+ +...+++++++|+||+|.+.+..++..++.++.
T Consensus 109 ~------------------------~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 109 E------------------------WLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLIDSANRGPTLEVTLA 163 (737)
T ss_pred c------------------------ccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccCCCcchHHHHHHHH
Confidence 1 113569999999999888875 345678999999999999988778888888777
Q ss_pred hhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCC-------ceeeec
Q 010028 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-------PLFLTT 335 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~-------~~~~~~ 335 (520)
.+.... +..|+|++|||++. ...+..+.... |.-...
T Consensus 164 rl~~~~-----------------------------------~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~ 207 (737)
T PRK02362 164 KLRRLN-----------------------------------PDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLRE 207 (737)
T ss_pred HHHhcC-----------------------------------CCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCee
Confidence 654311 24589999999964 33333221111 110000
Q ss_pred c---cccccCccccchhhhhccCCCcHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCC---------------
Q 010028 336 G---ETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE--------------- 396 (520)
Q Consensus 336 ~---~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~--------------- 396 (520)
. ........ ..... ....+...+..+... ..++++||||+|++.|+.++..|.....
T Consensus 208 ~v~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 283 (737)
T PRK02362 208 GVFYGGAIHFDD--SQREV--EVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELA 283 (737)
T ss_pred eEecCCeecccc--ccccC--CCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 0 00000000 00000 001111122222222 2567999999999999999988865311
Q ss_pred ------------------CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE----cc----
Q 010028 397 ------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD---- 450 (520)
Q Consensus 397 ------------------~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~----~~---- 450 (520)
...++.++|++++..+|..+++.|++|.++|||||+++++|+|+|..++||. |+
T Consensus 284 ~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g 363 (737)
T PRK02362 284 EEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAG 363 (737)
T ss_pred HHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCC
Confidence 0136889999999999999999999999999999999999999999998886 55
Q ss_pred -CCCCHHHHHHHHhhcccCCCC--CcEEEEEecch-H-HHHHHHHHHhcCCCCCc-ccC--CchhhhhhhhccccCC
Q 010028 451 -KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE-V-KRFKKLLQKADNDSCPI-HSI--PSSLIESLRPVYKSGD 519 (520)
Q Consensus 451 -~p~s~~~~~Q~~GR~~R~~~~--g~~i~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 519 (520)
.|.+..+|.||+||+||.|.+ |.++++....+ . +.+++++. ....|. ..+ ++.+.+++.+++..|.
T Consensus 364 ~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~---~~~~~i~S~l~~~~~l~~~lla~I~~~~ 437 (737)
T PRK02362 364 MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW---ADPEDVRSKLATEPALRTHVLSTIASGF 437 (737)
T ss_pred ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh---CCCCceeecCCChhhHHHHHHHHHHhCc
Confidence 578899999999999999865 88999887653 2 22344432 222222 223 3456667777665553
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-40 Score=358.58 Aligned_cols=376 Identities=20% Similarity=0.244 Sum_probs=259.1
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccc
Q 010028 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (520)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~ 102 (520)
.|++++ +++.+.+.+.+.|+..|+++|.+|++..+. +++++++++|||||||+++.+|+++.+... +.
T Consensus 2 ~~~~l~------l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~---~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~ 69 (720)
T PRK00254 2 KVDELR------VDERIKRVLKERGIEELYPPQAEALKSGVL---EGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GG 69 (720)
T ss_pred cHHHcC------CCHHHHHHHHhCCCCCCCHHHHHHHHHHHh---CCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CC
Confidence 456666 899999999999999999999999986333 589999999999999999999999887643 45
Q ss_pred cEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHH
Q 010028 103 RALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIAD 182 (520)
Q Consensus 103 ~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 182 (520)
++||++|+++|+.|+++. +..+. ..++++..++|+.....
T Consensus 70 ~~l~l~P~~aLa~q~~~~---------------------------------------~~~~~-~~g~~v~~~~Gd~~~~~ 109 (720)
T PRK00254 70 KAVYLVPLKALAEEKYRE---------------------------------------FKDWE-KLGLRVAMTTGDYDSTD 109 (720)
T ss_pred eEEEEeChHHHHHHHHHH---------------------------------------HHHHh-hcCCEEEEEeCCCCCch
Confidence 899999999999996544 33332 24788888888865322
Q ss_pred HHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHH
Q 010028 183 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262 (520)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~ 262 (520)
. ....++|+|+||+++..++.+ +...++++++||+||+|.+.+..++..++.++.
T Consensus 110 ~------------------------~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~ 164 (720)
T PRK00254 110 E------------------------WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGSYDRGATLEMILT 164 (720)
T ss_pred h------------------------hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCCccchHHHHHHHH
Confidence 1 123579999999999887765 345688999999999999887777777877776
Q ss_pred hhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccC
Q 010028 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 342 (520)
.+.. ..|+|++|||++. ...+..+.... .+. ........
T Consensus 165 ~l~~--------------------------------------~~qiI~lSATl~n-~~~la~wl~~~-~~~-~~~rpv~l 203 (720)
T PRK00254 165 HMLG--------------------------------------RAQILGLSATVGN-AEELAEWLNAE-LVV-SDWRPVKL 203 (720)
T ss_pred hcCc--------------------------------------CCcEEEEEccCCC-HHHHHHHhCCc-ccc-CCCCCCcc
Confidence 6432 3479999999964 44444432211 111 01010011
Q ss_pred ccc-cchhhhhccCC--Cc-----HHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcC-------------------
Q 010028 343 PER-LESYKLICESK--LK-----PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG------------------- 395 (520)
Q Consensus 343 ~~~-~~~~~~~~~~~--~k-----~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~------------------- 395 (520)
... ..+........ .+ ...+...+. .++++||||+|++.|+.++..|....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (720)
T PRK00254 204 RKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSL 281 (720)
T ss_pred eeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 000 00111111111 01 112222222 46789999999999988877664310
Q ss_pred -----------CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE-------ccCCC-CHH
Q 010028 396 -----------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------YDKPA-YIK 456 (520)
Q Consensus 396 -----------~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~-------~~~p~-s~~ 456 (520)
....++.++|++|+..+|..+.+.|++|.++|||||+++++|+|+|..++||. ++.|. +..
T Consensus 282 ~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~ 361 (720)
T PRK00254 282 EENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVL 361 (720)
T ss_pred hcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHH
Confidence 01235899999999999999999999999999999999999999999998884 44433 467
Q ss_pred HHHHHHhhcccCC--CCCcEEEEEecchH-HHHHHHHHHhcCCCCCcccCCchhhhhhhhccccC
Q 010028 457 TYIHRAGRTARAG--QLGRCFTLLHKDEV-KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 518 (520)
Q Consensus 457 ~~~Q~~GR~~R~~--~~g~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (520)
+|.||+||+||.| ..|.+++++...+. +.+++++..-...-.+..+.++.+.+++..++..|
T Consensus 362 ~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~ 426 (720)
T PRK00254 362 EIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNF 426 (720)
T ss_pred HHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhC
Confidence 9999999999976 46899999877552 33444432100000011223445556666655544
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.4e-40 Score=341.79 Aligned_cols=371 Identities=21% Similarity=0.313 Sum_probs=279.6
Q ss_pred CCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc----cccccEEEEc
Q 010028 33 PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVL 108 (520)
Q Consensus 33 ~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~----~~~~~vlil~ 108 (520)
+.|++.+.+++... |..||+.|.+||+.+.. |++++|.||||||||.++++|++..+.+.+ ..+..+||++
T Consensus 6 ~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIs 80 (814)
T COG1201 6 NILDPRVREWFKRK-FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYIS 80 (814)
T ss_pred hhcCHHHHHHHHHh-cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeC
Confidence 34899999999987 89999999999998775 999999999999999999999999998873 2357799999
Q ss_pred CCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHh
Q 010028 109 PTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 188 (520)
Q Consensus 109 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 188 (520)
|-++|..+ +...+..+....|+.+...+|+++...+...
T Consensus 81 PLkALn~D---------------------------------------i~~rL~~~~~~~G~~v~vRhGDT~~~er~r~-- 119 (814)
T COG1201 81 PLKALNND---------------------------------------IRRRLEEPLRELGIEVAVRHGDTPQSEKQKM-- 119 (814)
T ss_pred cHHHHHHH---------------------------------------HHHHHHHHHHHcCCccceecCCCChHHhhhc--
Confidence 99999999 7777777877889999999999987766544
Q ss_pred hcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC-cccccccEEEeehHHHHHHHHhhhhHHHHHHhhccC
Q 010028 189 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 267 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 267 (520)
..++|||+||||++|.-++...+. ..+.++.+|||||.|.+.....+.++.--++++...
T Consensus 120 -------------------~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l 180 (814)
T COG1201 120 -------------------LKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLREL 180 (814)
T ss_pred -------------------cCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhh
Confidence 446789999999999887776332 348899999999999998887777777777766542
Q ss_pred cccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCC--c-eeeecccccccCcc
Q 010028 268 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH--P-LFLTTGETRYKLPE 344 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~--~-~~~~~~~~~~~~~~ 344 (520)
. +..|.|++|||.. +.+...++.... + .++...... ...-
T Consensus 181 ~-----------------------------------~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k-~~~i 223 (814)
T COG1201 181 A-----------------------------------GDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAK-KLEI 223 (814)
T ss_pred C-----------------------------------cccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccCC-cceE
Confidence 2 1457899999996 555555543333 2 222222211 1111
Q ss_pred ccchhhhh-----ccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHH
Q 010028 345 RLESYKLI-----CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419 (520)
Q Consensus 345 ~~~~~~~~-----~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~ 419 (520)
.+...... .......+.+.++++++. .+|||+||+..++.++..|+..+. ..+..+||.++...|..+.++
T Consensus 224 ~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~ 299 (814)
T COG1201 224 KVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEER 299 (814)
T ss_pred EEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHH
Confidence 11110000 001122334445555543 899999999999999999998643 678899999999999999999
Q ss_pred HHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhccc-CCCCCcEEEEEec-chHHHHHHHHHHhcCCC
Q 010028 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR-AGQLGRCFTLLHK-DEVKRFKKLLQKADNDS 497 (520)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R-~~~~g~~i~~~~~-~~~~~~~~~~~~~~~~~ 497 (520)
|++|+.+.+|||++++-|||+.+++.||+++.|.++..++||+||+|+ .+...+++++..+ .|+-.-.-+.+.+....
T Consensus 300 lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~ 379 (814)
T COG1201 300 LKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGK 379 (814)
T ss_pred HhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999995 4555677777665 33333334444444444
Q ss_pred CCcccCCchhhh
Q 010028 498 CPIHSIPSSLIE 509 (520)
Q Consensus 498 ~~~~~~~~~~~~ 509 (520)
....+++.+-++
T Consensus 380 le~~~i~~~~LD 391 (814)
T COG1201 380 LERIKIPKNPLD 391 (814)
T ss_pred cccCCCCCcchh
Confidence 444445544443
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.7e-38 Score=343.88 Aligned_cols=338 Identities=19% Similarity=0.227 Sum_probs=245.0
Q ss_pred CCHHHHHHH-HHCCCCCcchhhHHHHHhhhCCCCCC--CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 35 l~~~~~~~l-~~~~~~~~~~~Q~~ai~~~~~~~~~~--~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
.+..+...+ ..++| .||+.|.+||+.+...+.++ .|.+++||||+|||.+++.+++..+.+ +.+++|++||+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----g~qvlvLvPT~ 510 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----GKQVAVLVPTT 510 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----CCeEEEEeCcH
Confidence 344555555 45788 69999999999998866554 589999999999999999999887754 35899999999
Q ss_pred HHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcc
Q 010028 112 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191 (520)
Q Consensus 112 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 191 (520)
+||.|+++. +..+....++++..++|+.+...+...+
T Consensus 511 ~LA~Q~~~~---------------------------------------f~~~~~~~~i~v~~Lsg~~~~~e~~~~~---- 547 (926)
T TIGR00580 511 LLAQQHFET---------------------------------------FKERFANFPVTIELLSRFRSAKEQNEIL---- 547 (926)
T ss_pred HHHHHHHHH---------------------------------------HHHHhccCCcEEEEEeccccHHHHHHHH----
Confidence 999995554 4444444578888888877654443221
Q ss_pred cccccccCCchhHHHhhc-cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccc
Q 010028 192 KLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 270 (520)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~ 270 (520)
..+. ..++|+||||..+ . +...+++++++||||+|++... ....+..+.
T Consensus 548 --------------~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEahrfgv~-----~~~~L~~~~----- 597 (926)
T TIGR00580 548 --------------KELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEEQRFGVK-----QKEKLKELR----- 597 (926)
T ss_pred --------------HHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeecccccchh-----HHHHHHhcC-----
Confidence 1222 3589999998533 2 3456889999999999986321 222222221
Q ss_pred ccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhh
Q 010028 271 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK 350 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 350 (520)
..++++++|||+.+........+..++..+...+... ..+..+.
T Consensus 598 ---------------------------------~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R---~~V~t~v 641 (926)
T TIGR00580 598 ---------------------------------TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR---LPVRTFV 641 (926)
T ss_pred ---------------------------------CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc---cceEEEE
Confidence 2457899999987655444444555665554433210 1111111
Q ss_pred hhccCCCcHHHHHH-HHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEE
Q 010028 351 LICESKLKPLYLVA-LLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 428 (520)
Q Consensus 351 ~~~~~~~k~~~l~~-~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (520)
. .. ....+.. +.+. ..+++++|||+++++++.+++.|+.. .++.++..+||.|+..+|++++++|++|+.+||
T Consensus 642 ~--~~--~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~-~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~IL 716 (926)
T TIGR00580 642 M--EY--DPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLREL-VPEARIAIAHGQMTENELEEVMLEFYKGEFQVL 716 (926)
T ss_pred E--ec--CHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHh-CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 1 11 1122222 2222 25779999999999999999999975 245789999999999999999999999999999
Q ss_pred EEecccccCCCCCCCcEEEEccCCC-CHHHHHHHHhhcccCCCCCcEEEEEecc------hHHHHHHHHH
Q 010028 429 VSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHKD------EVKRFKKLLQ 491 (520)
Q Consensus 429 v~T~~~~~Gidl~~~~~VI~~~~p~-s~~~~~Q~~GR~~R~~~~g~~i~~~~~~------~~~~~~~~~~ 491 (520)
|||+++++|+|+|++++||+++.|. +..+|.||+||+||.|+.|.|++++... ..++++-+.+
T Consensus 717 VaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~ 786 (926)
T TIGR00580 717 VCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQE 786 (926)
T ss_pred EECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999865 5779999999999999999999998643 3455555544
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.8e-38 Score=338.11 Aligned_cols=337 Identities=18% Similarity=0.200 Sum_probs=236.5
Q ss_pred HHHHHHHHCCCCCcchhhHHHHHhhhCCCCCC--CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHH
Q 010028 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (520)
Q Consensus 38 ~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~--~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~ 115 (520)
.+......++| .||+.|.+|++.+...+..+ .+++++||||||||.+|++|++..+.+ +.+++|++||++||.
T Consensus 250 ~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA~ 324 (681)
T PRK10917 250 LLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILAE 324 (681)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHHH
Confidence 33444456788 79999999999998865443 478999999999999999999887653 568999999999999
Q ss_pred hHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccc
Q 010028 116 QVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 195 (520)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 195 (520)
|+ ...+..+....++++.+++|+.+...+...+..
T Consensus 325 Q~---------------------------------------~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~------ 359 (681)
T PRK10917 325 QH---------------------------------------YENLKKLLEPLGIRVALLTGSLKGKERREILEA------ 359 (681)
T ss_pred HH---------------------------------------HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHH------
Confidence 94 444555555567999999999886655433211
Q ss_pred cccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccc
Q 010028 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 275 (520)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~ 275 (520)
.....++|+||||+.+.+ ...+++++++|+||+|++..... ..+....
T Consensus 360 -----------l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~~qr-----~~l~~~~---------- 407 (681)
T PRK10917 360 -----------IASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGVEQR-----LALREKG---------- 407 (681)
T ss_pred -----------HhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhHHHH-----HHHHhcC----------
Confidence 122358999999987632 24578899999999998743221 1111110
Q ss_pred cccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccC
Q 010028 276 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 355 (520)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (520)
...+++++|||+.+....+......+...+...+.. ...+... ...
T Consensus 408 ----------------------------~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~---r~~i~~~---~~~ 453 (681)
T PRK10917 408 ----------------------------ENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG---RKPITTV---VIP 453 (681)
T ss_pred ----------------------------CCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC---CCCcEEE---EeC
Confidence 124689999998654333322222222222111110 0111111 112
Q ss_pred CCcHHHHHHHHHh--cCCCcEEEEecCH--------HHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCc
Q 010028 356 KLKPLYLVALLQS--LGEEKCIVFTSSV--------ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425 (520)
Q Consensus 356 ~~k~~~l~~~~~~--~~~~k~lIf~~s~--------~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~ 425 (520)
..+.+.+...+.. ..+.+++|||+.+ ..+..+++.|.... .+..+..+||+|+..+|+++++.|++|+.
T Consensus 454 ~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~ 532 (681)
T PRK10917 454 DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-PELRVGLLHGRMKPAEKDAVMAAFKAGEI 532 (681)
T ss_pred cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 2233333333332 2567999999964 45566777777642 23789999999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCcEEEEccCCC-CHHHHHHHHhhcccCCCCCcEEEEEe-c---chHHHHHHHHH
Q 010028 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLH-K---DEVKRFKKLLQ 491 (520)
Q Consensus 426 ~vLv~T~~~~~Gidl~~~~~VI~~~~p~-s~~~~~Q~~GR~~R~~~~g~~i~~~~-~---~~~~~~~~~~~ 491 (520)
+|||||+++++|+|+|++++||+++.|. +...+.|++||+||.|..|.|++++. + ...++++.+.+
T Consensus 533 ~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 533 DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 9999999999999999999999999987 47889999999999999999999995 3 24455555544
No 47
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.7e-38 Score=336.16 Aligned_cols=328 Identities=17% Similarity=0.204 Sum_probs=231.2
Q ss_pred HHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCC--CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~--~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
..+...++..+| .||+.|.+|++.+...+... .+.+++||||||||.+|+++++..+.+ +.++++++||++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA 297 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHH
Confidence 344566677888 89999999999998765433 358999999999999999999887653 55899999999999
Q ss_pred HhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccc
Q 010028 115 LQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 194 (520)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 194 (520)
.|+ .+.+..+....++++.+++|+.+...+...+..
T Consensus 298 ~Q~---------------------------------------~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~----- 333 (630)
T TIGR00643 298 EQH---------------------------------------YNSLRNLLAPLGIEVALLTGSLKGKRRKELLET----- 333 (630)
T ss_pred HHH---------------------------------------HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHH-----
Confidence 994 444555555568999999999876654333211
Q ss_pred ccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccc
Q 010028 195 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274 (520)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~ 274 (520)
.....++|+|+||..+.+ ...+.+++++||||+|++..... ..+......
T Consensus 334 ------------i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~qr----~~l~~~~~~-------- 383 (630)
T TIGR00643 334 ------------IASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVEQR----KKLREKGQG-------- 383 (630)
T ss_pred ------------HhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHHHH----HHHHHhccc--------
Confidence 122457999999987642 24578899999999998643221 111111100
Q ss_pred ccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhcc
Q 010028 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 354 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
....+++++|||+.+...........+...+...+.. ...+... ...
T Consensus 384 ----------------------------~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~---r~~i~~~--~~~ 430 (630)
T TIGR00643 384 ----------------------------GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG---RKPITTV--LIK 430 (630)
T ss_pred ----------------------------CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC---CCceEEE--EeC
Confidence 0134689999998654333222111111111110000 0011111 111
Q ss_pred CCCcHHHHHHHHHh--cCCCcEEEEecCH--------HHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC
Q 010028 355 SKLKPLYLVALLQS--LGEEKCIVFTSSV--------ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424 (520)
Q Consensus 355 ~~~k~~~l~~~~~~--~~~~k~lIf~~s~--------~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~ 424 (520)
. ...+.+...+.. ..+.+++|||+.. ..+..+++.|.+.. .+..+..+||+|+..+|.++++.|++|+
T Consensus 431 ~-~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~ 508 (630)
T TIGR00643 431 H-DEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGE 508 (630)
T ss_pred c-chHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 1 122334443333 2567899999976 45667777777642 4578999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCcEEEEccCCC-CHHHHHHHHhhcccCCCCCcEEEEE
Q 010028 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLL 478 (520)
Q Consensus 425 ~~vLv~T~~~~~Gidl~~~~~VI~~~~p~-s~~~~~Q~~GR~~R~~~~g~~i~~~ 478 (520)
.+|||||+++++|+|+|++++||+++.|. +...|.|++||+||.|+.|.|++++
T Consensus 509 ~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 509 VDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999999999999999986 5788999999999999999999999
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-38 Score=342.35 Aligned_cols=348 Identities=20% Similarity=0.228 Sum_probs=243.9
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccccc
Q 010028 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 103 (520)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~ 103 (520)
|++++ |++.+.+.+.+.+|. |+++|.+|++.+. ++++++++||||||||+++.+++++.+.. +.+
T Consensus 3 ~~~~~------l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~----~~k 67 (674)
T PRK01172 3 ISDLG------YDDEFLNLFTGNDFE-LYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA----GLK 67 (674)
T ss_pred HhhcC------CCHHHHHHHhhCCCC-CCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh----CCc
Confidence 45566 899999999998885 9999999999864 48999999999999999999999887653 358
Q ss_pred EEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHH
Q 010028 104 ALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADE 183 (520)
Q Consensus 104 vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 183 (520)
+++++|+++||.|+++++ ..+. ..+.++...+|+......
T Consensus 68 ~v~i~P~raLa~q~~~~~---------------------------------------~~l~-~~g~~v~~~~G~~~~~~~ 107 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEEL---------------------------------------SRLR-SLGMRVKISIGDYDDPPD 107 (674)
T ss_pred EEEEechHHHHHHHHHHH---------------------------------------HHHh-hcCCeEEEEeCCCCCChh
Confidence 999999999999965553 2221 236777777777543221
Q ss_pred HHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHh
Q 010028 184 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 263 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~ 263 (520)
....++|+|+||+++..++.+ ....+.+++++|+||+|++.+..++..++.++..
T Consensus 108 ------------------------~~~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~ 162 (674)
T PRK01172 108 ------------------------FIKRYDVVILTSEKADSLIHH-DPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS 162 (674)
T ss_pred ------------------------hhccCCEEEECHHHHHHHHhC-ChhHHhhcCEEEEecchhccCCCccHHHHHHHHH
Confidence 113569999999998887776 3355789999999999998877777777777665
Q ss_pred hccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCc
Q 010028 264 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 343 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 343 (520)
+.... +..|+|++|||++. ...+..+.... .+ ........+.
T Consensus 163 ~~~~~-----------------------------------~~~riI~lSATl~n-~~~la~wl~~~-~~-~~~~r~vpl~ 204 (674)
T PRK01172 163 ARYVN-----------------------------------PDARILALSATVSN-ANELAQWLNAS-LI-KSNFRPVPLK 204 (674)
T ss_pred HHhcC-----------------------------------cCCcEEEEeCccCC-HHHHHHHhCCC-cc-CCCCCCCCeE
Confidence 44311 24579999999963 44444322111 11 0000000100
Q ss_pred cccchh-hhhccCCC-cHHHHHHHHHh--cCCCcEEEEecCHHHHHHHHHHHhhcCCC----------------------
Q 010028 344 ERLESY-KLICESKL-KPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------- 397 (520)
Q Consensus 344 ~~~~~~-~~~~~~~~-k~~~l~~~~~~--~~~~k~lIf~~s~~~~~~l~~~L~~~~~~---------------------- 397 (520)
..+... ........ ....+..++.. ..++++||||++++.++.++..|......
T Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l 284 (674)
T PRK01172 205 LGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEML 284 (674)
T ss_pred EEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHH
Confidence 000000 00000000 11112233332 25679999999999999999988653110
Q ss_pred ceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccC---------CCCHHHHHHHHhhcccC
Q 010028 398 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------PAYIKTYIHRAGRTARA 468 (520)
Q Consensus 398 ~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~---------p~s~~~~~Q~~GR~~R~ 468 (520)
..++.++|++++..+|..+.+.|++|.++|||||+++++|+|+|+.. ||+.+. |.+..+|.||+||+||.
T Consensus 285 ~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~ 363 (674)
T PRK01172 285 PHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRP 363 (674)
T ss_pred hcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCC
Confidence 13578899999999999999999999999999999999999999755 444442 45788999999999999
Q ss_pred CC--CCcEEEEEecch-HHHHHHHH
Q 010028 469 GQ--LGRCFTLLHKDE-VKRFKKLL 490 (520)
Q Consensus 469 ~~--~g~~i~~~~~~~-~~~~~~~~ 490 (520)
|. .|.+++++...+ .+.+++++
T Consensus 364 g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 364 GYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred CCCCcceEEEEecCcccHHHHHHHH
Confidence 85 466777766543 56666665
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-38 Score=318.47 Aligned_cols=340 Identities=21% Similarity=0.287 Sum_probs=261.2
Q ss_pred HHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHH
Q 010028 40 KVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118 (520)
Q Consensus 40 ~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~ 118 (520)
...|.. +|+..+++.|.++|+.+++ ++++++..|||.|||++|.+|++-. .+-+|||+|-.+|..++.
T Consensus 6 ~~~L~~~fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 6 QQVLKQVFGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHHhCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHHH
Confidence 355654 7999999999999999887 8999999999999999999998842 237999999999999976
Q ss_pred hhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccccccc
Q 010028 119 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 198 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 198 (520)
+.+++. ++.+.++.+..+..++...+.
T Consensus 75 ~~l~~~-------------------------------------------Gi~A~~lnS~l~~~e~~~v~~---------- 101 (590)
T COG0514 75 DQLEAA-------------------------------------------GIRAAYLNSTLSREERQQVLN---------- 101 (590)
T ss_pred HHHHHc-------------------------------------------CceeehhhcccCHHHHHHHHH----------
Confidence 665554 788888888877666644322
Q ss_pred CCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH--hhhhHHHHHHhhccCccccccccc
Q 010028 199 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDAS 276 (520)
Q Consensus 199 ~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~~~~~~~ 276 (520)
.......++++-+|+++..-.... .+.-.++.++||||||++..++ |......+-.....
T Consensus 102 -------~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~---------- 163 (590)
T COG0514 102 -------QLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG---------- 163 (590)
T ss_pred -------HHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh----------
Confidence 123345799999999884432211 1224557899999999998775 44444444443322
Q ss_pred ccccccccchhhhcccccccCCCCCCccchheeeecccccCCchh--hhhcccCCceeeecccccccCccccchhhhhcc
Q 010028 277 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICE 354 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
.+.++++.+|||.++.+.. .....+..+..+..+.+.+++.-.+.... +
T Consensus 164 --------------------------~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~---~ 214 (590)
T COG0514 164 --------------------------LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG---E 214 (590)
T ss_pred --------------------------CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc---c
Confidence 2356789999998876655 33456667767776666655422221111 1
Q ss_pred CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc
Q 010028 355 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 434 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (520)
...+...+.. ......+..||||.|++.++.+++.|...| ..+..||++|+..+|+.+.+.|..++.+|+|||.++
T Consensus 215 ~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AF 290 (590)
T COG0514 215 PSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNG---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAF 290 (590)
T ss_pred HHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 1222222222 124456678999999999999999999865 899999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhc
Q 010028 435 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 494 (520)
Q Consensus 435 ~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~ 494 (520)
.+|||-|++.+||+|++|.|.+.|.|-+||+||.|....|++++.+.|....+.++++-.
T Consensus 291 GMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 291 GMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred cCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999988888887644
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.1e-37 Score=338.66 Aligned_cols=339 Identities=17% Similarity=0.178 Sum_probs=244.4
Q ss_pred CHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCC--CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~--~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
.....+....++| .|++.|.+||+.+...+... .|++++|+||+|||.+++.+++..+. .+.+++|++||++|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~eL 661 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHHH
Confidence 3445566677888 89999999999988865443 68999999999999999888776553 35689999999999
Q ss_pred HHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccc
Q 010028 114 ALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193 (520)
Q Consensus 114 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 193 (520)
|.|+++. +.......++++.+++|+.+...+...+..
T Consensus 662 A~Q~~~~---------------------------------------f~~~~~~~~v~i~~l~g~~s~~e~~~il~~---- 698 (1147)
T PRK10689 662 AQQHYDN---------------------------------------FRDRFANWPVRIEMLSRFRSAKEQTQILAE---- 698 (1147)
T ss_pred HHHHHHH---------------------------------------HHHhhccCCceEEEEECCCCHHHHHHHHHH----
Confidence 9995554 333333346788888888776655433211
Q ss_pred cccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccc
Q 010028 194 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273 (520)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~ 273 (520)
.....++|+||||+.+ . +...+++++++||||+|++... . ...++.++
T Consensus 699 -------------l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrfG~~-~----~e~lk~l~-------- 746 (1147)
T PRK10689 699 -------------AAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRFGVR-H----KERIKAMR-------- 746 (1147)
T ss_pred -------------HHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhcchh-H----HHHHHhcC--------
Confidence 1124689999999643 2 2356788999999999997321 1 22222221
Q ss_pred cccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhc
Q 010028 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
...+++++|||+.+....+...++.++.++...+... ..+..+....
T Consensus 747 ------------------------------~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r---~~v~~~~~~~ 793 (1147)
T PRK10689 747 ------------------------------ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTFVREY 793 (1147)
T ss_pred ------------------------------CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC---CCceEEEEec
Confidence 2457999999987766666666777777665443321 1111111111
Q ss_pred cCCCcHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 354 ESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 354 ~~~~k~~~l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
........++.. ..+++++||||+++.++.+++.|.... ++.++..+||+|+..+|++++.+|++|+.+|||||+
T Consensus 794 ---~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd 869 (1147)
T PRK10689 794 ---DSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 (1147)
T ss_pred ---CcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc
Confidence 111111122222 246789999999999999999998762 347899999999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEEEccCC-CCHHHHHHHHhhcccCCCCCcEEEEEecc------hHHHHHHHHH
Q 010028 433 AMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRCFTLLHKD------EVKRFKKLLQ 491 (520)
Q Consensus 433 ~~~~Gidl~~~~~VI~~~~p-~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~------~~~~~~~~~~ 491 (520)
++++|+|+|++++||+.+.. .+..+|.|++||+||.|+.|.|++++... ..++++.+.+
T Consensus 870 IierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~ 935 (1147)
T PRK10689 870 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 (1147)
T ss_pred hhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHH
Confidence 99999999999999966543 35678999999999999999999988542 3455555544
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.8e-37 Score=342.75 Aligned_cols=318 Identities=21% Similarity=0.258 Sum_probs=220.6
Q ss_pred EECCCCChhhHHhHHHHHHHHhhhc---------cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhh
Q 010028 74 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 144 (520)
Q Consensus 74 i~apTGsGKT~~~ll~il~~l~~~~---------~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (520)
|+||||||||++|++|+++++.... ..+.++|||+|+++|+.|+++++++.+..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~----------------- 63 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKG----------------- 63 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHh-----------------
Confidence 5799999999999999999987542 13578999999999999987776543111
Q ss_pred cccchhccchhhHHHHhhhc-ccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHH
Q 010028 145 FDSLLFISLPQVKDVFAAIA-PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 223 (520)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~ 223 (520)
+......++ ...++++...+|+.+...+.+. +.++++|+|+||++|.
T Consensus 64 -----------i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rl---------------------l~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 64 -----------IADERRRRGETEVNLRVGIRTGDTPAQERSKL---------------------TRNPPDILITTPESLY 111 (1490)
T ss_pred -----------hhhhhhhcccccCceEEEEEECCCCHHHHHHH---------------------hcCCCCEEEecHHHHH
Confidence 111112222 2347899999999887766443 3346799999999998
Q ss_pred HHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCc
Q 010028 224 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 303 (520)
Q Consensus 224 ~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (520)
.++.+.....++++++|||||+|.+.+..++..+...++++.....
T Consensus 112 ~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~---------------------------------- 157 (1490)
T PRK09751 112 LMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH---------------------------------- 157 (1490)
T ss_pred HHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC----------------------------------
Confidence 8877533346899999999999999876666666666665543110
Q ss_pred cchheeeecccccCCchhhhhccc-CCceeeecccccccCccccc----hhhhhcc-------------CCCcHHHH-HH
Q 010028 304 PRLVKMVLSATLTQDPNKLAQLDL-HHPLFLTTGETRYKLPERLE----SYKLICE-------------SKLKPLYL-VA 364 (520)
Q Consensus 304 ~~~~~i~~SaT~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~~k~~~l-~~ 364 (520)
.+.|+|++|||+.+ .+.+..... ..+..+..........-.+. ....... .......+ ..
T Consensus 158 ~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 158 TSAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 24589999999975 455444332 23443322211111110000 0000000 00000011 12
Q ss_pred HHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCC------------------------------CceeEEEeccccCHHHH
Q 010028 365 LLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE------------------------------LRIKIKEYSGLQRQSVR 413 (520)
Q Consensus 365 ~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~------------------------------~~~~v~~~~~~~~~~~r 413 (520)
++.. ...+++||||||+..|+.++..|++... ....+..+||+++..+|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 2222 2467899999999999999999976421 01235689999999999
Q ss_pred HHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCC-CCCcEE
Q 010028 414 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCF 475 (520)
Q Consensus 414 ~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~-~~g~~i 475 (520)
..+.+.|++|+.++||||++++.|||++.+++||+++.|.++.+|+||+||+||.. ..+.++
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999963 234444
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.8e-36 Score=318.92 Aligned_cols=345 Identities=19% Similarity=0.153 Sum_probs=231.0
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCC-CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~-~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.||. |+|+|.++++.++. |+ ++++.+|||||||.++.++++.. ........++++++|+++|+.|+++.++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~----G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVA----GQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHc----CCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHH
Confidence 5886 99999999998775 76 68889999999999665444432 111112234556779999999999998776
Q ss_pred cccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhH
Q 010028 125 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 204 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (520)
......... .....+ .............+++.+++||.+...+...
T Consensus 86 ~k~l~~~~~-----~~~~~~-----------~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~------------------ 131 (844)
T TIGR02621 86 GERLPDVPE-----VEAALW-----------ALCSTRPEKKDRPLAISTLRGQFADNDEWML------------------ 131 (844)
T ss_pred HHHhcccch-----hhhhhh-----------hhhccccccccCCeEEEEEECCCChHHHHHh------------------
Confidence 443210000 000000 1111222334456899999999887766544
Q ss_pred HHhhccCCcEEEeCchHHHHHH-hcCC-------Cc---ccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccc
Q 010028 205 LQELQSAVDILVATPGRLMDHI-NATR-------GF---TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273 (520)
Q Consensus 205 ~~~~~~~~~Ili~Tp~~l~~~l-~~~~-------~~---~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~ 273 (520)
+..+++|+|+|++.+.+-. .+.. .+ .+.+++++|+|||| ++.+|.+.+..|++.+....
T Consensus 132 ---l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~----- 201 (844)
T TIGR02621 132 ---DPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPP----- 201 (844)
T ss_pred ---cCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCc-----
Confidence 3457799999976653211 1100 01 16778999999999 57788888888887642100
Q ss_pred cccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhc
Q 010028 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
...+.|+++||||++............++..+........ ...+.++ ...
T Consensus 202 ----------------------------~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~-a~ki~q~-v~v 251 (844)
T TIGR02621 202 ----------------------------DFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLA-AKKIVKL-VPP 251 (844)
T ss_pred ----------------------------ccccceEEEEecCCCccHHHHHHHHccCCceeeccccccc-ccceEEE-Eec
Confidence 0013579999999987766665555555554443322211 2222232 122
Q ss_pred cCCCcHHHHHHHH---HhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHH-----HHHHHHHc---
Q 010028 354 ESKLKPLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE--- 422 (520)
Q Consensus 354 ~~~~k~~~l~~~~---~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~-----~~~~~f~~--- 422 (520)
....+...+...+ ....++++||||||++.++.+++.|+..+ + ..+||+|++.+|. ++++.|++
T Consensus 252 ~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~ 326 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQML 326 (844)
T ss_pred ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhcccc
Confidence 2223333332222 12356789999999999999999999754 3 8899999999999 78999987
Q ss_pred -CC-------ceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCC-cEEEEE
Q 010028 423 -GK-------IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG-RCFTLL 478 (520)
Q Consensus 423 -g~-------~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g-~~i~~~ 478 (520)
|+ ..|||||+++++|+|++. ++||++..| .+.|+||+||+||.|+.| ..+.++
T Consensus 327 ~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 327 SGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 44 689999999999999996 888887766 789999999999999753 334444
No 53
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.4e-35 Score=284.00 Aligned_cols=323 Identities=21% Similarity=0.273 Sum_probs=231.1
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
...+|.||......++ .++.+++.|||.|||+.+++.+...+... ++ ++|+++||+.|+.|+++.
T Consensus 13 ~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~-kvlfLAPTKPLV~Qh~~~------- 77 (542)
T COG1111 13 TIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWF--GG-KVLFLAPTKPLVLQHAEF------- 77 (542)
T ss_pred cccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhc--CC-eEEEecCCchHHHHHHHH-------
Confidence 4578888887766654 46999999999999999999888888765 33 899999999999995444
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
+.+......-.++.++|......+...|
T Consensus 78 --------------------------------~~~v~~ip~~~i~~ltGev~p~~R~~~w-------------------- 105 (542)
T COG1111 78 --------------------------------CRKVTGIPEDEIAALTGEVRPEEREELW-------------------- 105 (542)
T ss_pred --------------------------------HHHHhCCChhheeeecCCCChHHHHHHH--------------------
Confidence 4444443455778889988876664443
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHH-HHHhhhhHHHHHHhhccCcccccccccccccccccch
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL-REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 286 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (520)
....|+++||+.+.+-+.. +.+++.++.++||||||+-- +-.|-...+.+++.-.
T Consensus 106 --~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k--------------------- 161 (542)
T COG1111 106 --AKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK--------------------- 161 (542)
T ss_pred --hhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhcc---------------------
Confidence 4568999999999998887 45899999999999999732 2233344444444322
Q ss_pred hhhcccccccCCCCCCccchheeeecccccCCchhhhh----cccCCce-------------------------------
Q 010028 287 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ----LDLHHPL------------------------------- 331 (520)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~----~~l~~~~------------------------------- 331 (520)
...++++|||+..+.+.... .+..+-.
T Consensus 162 ------------------~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ 223 (542)
T COG1111 162 ------------------NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKE 223 (542)
T ss_pred ------------------CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHH
Confidence 23578889998764443221 0110000
Q ss_pred --------------------eeecccc--c--------------ccCccc------------------------------
Q 010028 332 --------------------FLTTGET--R--------------YKLPER------------------------------ 345 (520)
Q Consensus 332 --------------------~~~~~~~--~--------------~~~~~~------------------------------ 345 (520)
++..... . ......
T Consensus 224 ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~ 303 (542)
T COG1111 224 IRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFY 303 (542)
T ss_pred HHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 0000000 0 000000
Q ss_pred ------------------------------cchh---hhhccCCCcHHHHHHHHHhc----CCCcEEEEecCHHHHHHHH
Q 010028 346 ------------------------------LESY---KLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLC 388 (520)
Q Consensus 346 ------------------------------~~~~---~~~~~~~~k~~~l~~~~~~~----~~~k~lIf~~s~~~~~~l~ 388 (520)
+... ....-.++|++.+.+++.+. .+.++|||++.+++++.+.
T Consensus 304 ~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~ 383 (542)
T COG1111 304 QYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIV 383 (542)
T ss_pred HHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHH
Confidence 0000 00111345666666666543 6679999999999999999
Q ss_pred HHHhhcCCCceeEEEe-------ccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHH
Q 010028 389 TLLNHFGELRIKIKEY-------SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 461 (520)
Q Consensus 389 ~~L~~~~~~~~~v~~~-------~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~ 461 (520)
++|...+.... +.++ ..+|++++..++++.|++|+++|||||++.++|+|+|.++.||.|++..|...++||
T Consensus 384 ~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR 462 (542)
T COG1111 384 NFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQR 462 (542)
T ss_pred HHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHh
Confidence 99998763322 2222 247999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCcEEEEEecc
Q 010028 462 AGRTARAGQLGRCFTLLHKD 481 (520)
Q Consensus 462 ~GR~~R~~~~g~~i~~~~~~ 481 (520)
.||+||. +.|.+++++.++
T Consensus 463 ~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 463 KGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred hCccccC-CCCeEEEEEecC
Confidence 9999997 699999999886
No 54
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-36 Score=263.73 Aligned_cols=336 Identities=26% Similarity=0.389 Sum_probs=273.5
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
+++.|.+.- |.|++++++..+||.+|+..|.+||+..+- |-|++-+|..|.|||.+++++.++++..- .
T Consensus 40 hssgfrdfl------lkpellraivdcgfehpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv-~ 108 (387)
T KOG0329|consen 40 HSSGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPV-D 108 (387)
T ss_pred eccchhhhh------cCHHHHHHHHhccCCCchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCC-C
Confidence 456677766 899999999999999999999999988776 89999999999999999999999987644 2
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-cceEEeccCcc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQS 178 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~ 178 (520)
....++++|.|++||.| +.+.+.++.+.. ++++..+.||.
T Consensus 109 g~vsvlvmchtrelafq---------------------------------------i~~ey~rfskymP~vkvaVFfGG~ 149 (387)
T KOG0329|consen 109 GQVSVLVMCHTRELAFQ---------------------------------------ISKEYERFSKYMPSVKVSVFFGGL 149 (387)
T ss_pred CeEEEEEEeccHHHHHH---------------------------------------HHHHHHHHHhhCCCceEEEEEcce
Confidence 34569999999999999 444444444433 78999999999
Q ss_pred chHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhhhH
Q 010028 179 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWL 257 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~~l 257 (520)
+.......+.. -|+|+++||+++..+.++ +.+++++++..|+|||+.|+. ..++..+
T Consensus 150 ~Ikkdee~lk~---------------------~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdkmle~lDMrRDv 207 (387)
T KOG0329|consen 150 FIKKDEELLKN---------------------CPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRDV 207 (387)
T ss_pred eccccHHHHhC---------------------CCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHHHHHHHHHHHHH
Confidence 88777554432 569999999999988887 668899999999999997764 4567778
Q ss_pred HHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccc
Q 010028 258 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 337 (520)
Q Consensus 258 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~ 337 (520)
+++++..+. .-|+.-+|||+++.+....+.++.+|.-+-...
T Consensus 208 QEifr~tp~--------------------------------------~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDd 249 (387)
T KOG0329|consen 208 QEIFRMTPH--------------------------------------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDD 249 (387)
T ss_pred HHHhhcCcc--------------------------------------cceeeeeeeecchhhHHHHHhhhcCchhhhccc
Confidence 888877655 336889999999999999999999998776666
Q ss_pred ccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHH
Q 010028 338 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 417 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~ 417 (520)
+..-....+.+++.......|...+..++....-.+++||+.|+..+.
T Consensus 250 E~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~-------------------------------- 297 (387)
T KOG0329|consen 250 EAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS-------------------------------- 297 (387)
T ss_pred hhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh--------------------------------
Confidence 655556667778888888888888888888888889999998876511
Q ss_pred HHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecc-hHHHHHHHHHHhcCC
Q 010028 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADND 496 (520)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~~~~~~~~~~~~~~~ 496 (520)
| ..+ +|+|+.+.+|+|+..++.+++||.|.+.++|.||.||+||.|..|.+|.|++.. +.+.+..+-+..+.
T Consensus 298 --f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v- 370 (387)
T KOG0329|consen 298 --F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEV- 370 (387)
T ss_pred --h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhc-
Confidence 2 113 899999999999999999999999999999999999999999999999998874 56666666554432
Q ss_pred CCCcccCCch
Q 010028 497 SCPIHSIPSS 506 (520)
Q Consensus 497 ~~~~~~~~~~ 506 (520)
++..+|++
T Consensus 371 --~i~eLpde 378 (387)
T KOG0329|consen 371 --NIKELPDE 378 (387)
T ss_pred --cHhhcCcc
Confidence 33445554
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=287.79 Aligned_cols=357 Identities=24% Similarity=0.274 Sum_probs=272.5
Q ss_pred CccCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHH
Q 010028 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (520)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~ 93 (520)
|...-.....-+.+|++.++ +++++++.+...|+..+.|.|.-|+++ ..++|+|.+|.++|+||||++.-++-+.+
T Consensus 181 yD~v~a~~~~~~r~~vdeLd-ipe~fk~~lk~~G~~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~ 256 (830)
T COG1202 181 YDEVTAETDEVERVPVDELD-IPEKFKRMLKREGIEELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPR 256 (830)
T ss_pred ceeeeccccccccccccccC-CcHHHHHHHHhcCcceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHH
Confidence 55444445555567777777 999999999999999999999998764 56789999999999999999988888888
Q ss_pred HhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEe
Q 010028 94 LSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGL 173 (520)
Q Consensus 94 l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (520)
++.. +.+.|||+|-.+||+| -.+.+...+...++.+..
T Consensus 257 ~l~~---g~KmlfLvPLVALANQ---------------------------------------Ky~dF~~rYs~Lglkvai 294 (830)
T COG1202 257 LLSG---GKKMLFLVPLVALANQ---------------------------------------KYEDFKERYSKLGLKVAI 294 (830)
T ss_pred HHhC---CCeEEEEehhHHhhcc---------------------------------------hHHHHHHHhhcccceEEE
Confidence 8754 5689999999999999 555555555667888877
Q ss_pred ccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHh
Q 010028 174 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 253 (520)
Q Consensus 174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~ 253 (520)
.+|-........- ........+||+|||++.+-.++..+ ..+.+++.|||||+|.+-+...
T Consensus 295 rVG~srIk~~~~p-----------------v~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDEiHtL~deER 355 (830)
T COG1202 295 RVGMSRIKTREEP-----------------VVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDEIHTLEDEER 355 (830)
T ss_pred EechhhhcccCCc-----------------cccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeeeeeeccchhc
Confidence 7776543332110 00112246799999999988888764 5688999999999999988788
Q ss_pred hhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceee
Q 010028 254 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333 (520)
Q Consensus 254 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~ 333 (520)
+..+..++.+++... +..|.|++|||.. +...++....-+++.+
T Consensus 356 G~RLdGLI~RLr~l~-----------------------------------~~AQ~i~LSATVg-Np~elA~~l~a~lV~y 399 (830)
T COG1202 356 GPRLDGLIGRLRYLF-----------------------------------PGAQFIYLSATVG-NPEELAKKLGAKLVLY 399 (830)
T ss_pred ccchhhHHHHHHHhC-----------------------------------CCCeEEEEEeecC-ChHHHHHHhCCeeEee
Confidence 888888888776522 4568999999994 6666666555555544
Q ss_pred ecccccccCccccc-hhhhhccCCCcHHHHHHHHHhc--------CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEe
Q 010028 334 TTGETRYKLPERLE-SYKLICESKLKPLYLVALLQSL--------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 404 (520)
Q Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~~~~~--------~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~ 404 (520)
.-.+ -.++ |.....+...|.+.+..+.+.. -.+++|||++|+..|..+++.|...| +++..|
T Consensus 400 ~~RP------VplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG---~~a~pY 470 (830)
T COG1202 400 DERP------VPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG---LKAAPY 470 (830)
T ss_pred cCCC------CChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC---cccccc
Confidence 3322 1222 2223333556666666655432 34689999999999999999999776 899999
Q ss_pred ccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE---ccCCC-CHHHHHHHHhhcccCC--CCCcEEEEE
Q 010028 405 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN---YDKPA-YIKTYIHRAGRTARAG--QLGRCFTLL 478 (520)
Q Consensus 405 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~---~~~p~-s~~~~~Q~~GR~~R~~--~~g~~i~~~ 478 (520)
|++++..+|..+...|.+++..++|+|-+++.|+|+|.-++|+. ++.-| |+.+|.||+||+||.+ ..|++++++
T Consensus 471 HaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 471 HAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred cCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEe
Confidence 99999999999999999999999999999999999995444331 22222 6899999999999987 369999987
Q ss_pred ec
Q 010028 479 HK 480 (520)
Q Consensus 479 ~~ 480 (520)
.+
T Consensus 551 ep 552 (830)
T COG1202 551 EP 552 (830)
T ss_pred cC
Confidence 75
No 56
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.9e-34 Score=296.26 Aligned_cols=303 Identities=17% Similarity=0.183 Sum_probs=205.2
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
...|+++|.+|+..++. +++.++++|||+|||.++.. +...+... ...++||++||++|+.|+++.+
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~-l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l------ 178 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYL-LSRYYLEN--YEGKVLIIVPTTSLVTQMIDDF------ 178 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEECcHHHHHHHHHHH------
Confidence 35899999999988775 77899999999999997643 33222222 3348999999999999955543
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
..+.......+..+.+|...
T Consensus 179 ---------------------------------~~~~~~~~~~~~~i~~g~~~--------------------------- 198 (501)
T PHA02558 179 ---------------------------------VDYRLFPREAMHKIYSGTAK--------------------------- 198 (501)
T ss_pred ---------------------------------HHhccccccceeEEecCccc---------------------------
Confidence 33332222334344444321
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchh
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 287 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
....+|+|+||+++.+... ..++++++||+||||++.+..+ ..++..+..
T Consensus 199 -~~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~~----~~il~~~~~--------------------- 248 (501)
T PHA02558 199 -DTDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKSL----TSIITKLDN--------------------- 248 (501)
T ss_pred -CCCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchhH----HHHHHhhhc---------------------
Confidence 0245899999999865332 2467899999999999876543 344443321
Q ss_pred hhcccccccCCCCCCccchheeeecccccCCchhhhh-cccCCceeeecccc-----cc-----------cCc-c-----
Q 010028 288 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHPLFLTTGET-----RY-----------KLP-E----- 344 (520)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~l~~~~~~~~~~~-----~~-----------~~~-~----- 344 (520)
..+++++|||+......... ..+-.|........ .. ..+ .
T Consensus 249 -----------------~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~ 311 (501)
T PHA02558 249 -----------------CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKL 311 (501)
T ss_pred -----------------cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhh
Confidence 22579999998643221110 00111111111000 00 000 0
Q ss_pred ---cc-chhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHH
Q 010028 345 ---RL-ESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 418 (520)
Q Consensus 345 ---~~-~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~ 418 (520)
.. ..+........+...+..+.... .+.+++|||++.++++.+++.|+..+ ..+..+||+++..+|.++++
T Consensus 312 ~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~ 388 (501)
T PHA02558 312 KGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKK 388 (501)
T ss_pred cccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHH
Confidence 00 00111222333444444444332 46789999999999999999999865 78999999999999999999
Q ss_pred HHHcCCceEEEEe-cccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCc
Q 010028 419 AFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 473 (520)
Q Consensus 419 ~f~~g~~~vLv~T-~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~ 473 (520)
.|++|+..+||+| +.+++|+|+|++++||++.++.|...|+||+||++|.+..+.
T Consensus 389 ~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 389 IAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred HHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 9999999999998 899999999999999999999999999999999999885543
No 57
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.5e-34 Score=302.99 Aligned_cols=326 Identities=15% Similarity=0.137 Sum_probs=222.8
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHH---------hHHHHHHHHhh--hccccccEEEEcCCHHHHHhHH
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS---------YALPIVQTLSN--RAVRCLRALVVLPTRDLALQVN 118 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~---------~ll~il~~l~~--~~~~~~~vlil~Pt~~La~q~~ 118 (520)
.+++.|.++-+.+++.+.++++++++|+||||||.+ |+++.+..+.. ......++++++||++||.|++
T Consensus 160 ~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred cCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHH
Confidence 578888888888888777899999999999999987 33444544421 1123568999999999999955
Q ss_pred hhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccccccc
Q 010028 119 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 198 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 198 (520)
.++.+. . .+....+..+...+|+.+....
T Consensus 240 ~~i~~~-----------------------------------v-g~~~~~g~~v~v~~Gg~~~~~~--------------- 268 (675)
T PHA02653 240 ITLLKS-----------------------------------L-GFDEIDGSPISLKYGSIPDELI--------------- 268 (675)
T ss_pred HHHHHH-----------------------------------h-CccccCCceEEEEECCcchHHh---------------
Confidence 442221 1 1112235677888888762111
Q ss_pred CCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccccccc
Q 010028 199 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278 (520)
Q Consensus 199 ~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 278 (520)
.......+|+++|+... ...++.+++||+||||.+...+ +.+..++.....
T Consensus 269 -------~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~------------ 319 (675)
T PHA02653 269 -------NTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHID------------ 319 (675)
T ss_pred -------hcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHHHHhhh------------
Confidence 11112568999996521 1246789999999999865432 344444432211
Q ss_pred ccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhcc----
Q 010028 279 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---- 354 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 354 (520)
...|+++||||++.+...+ ..++.+|..+.+.... ...+++++....
T Consensus 320 -------------------------~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt---~~pV~~~yi~~~~~~~ 370 (675)
T PHA02653 320 -------------------------KIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGT---LFPISEVYVKNKYNPK 370 (675)
T ss_pred -------------------------hcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCc---CCCeEEEEeecCcccc
Confidence 1126899999998776666 4566667666554221 111222211110
Q ss_pred ------CCCcHHHHHHHHHh---cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH-HcCC
Q 010028 355 ------SKLKPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGK 424 (520)
Q Consensus 355 ------~~~k~~~l~~~~~~---~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f-~~g~ 424 (520)
...+. .+...+.. ..++.+||||++..+++.+++.|+... +++.+..+||++++. ++.++.| ++|+
T Consensus 371 ~~~~y~~~~k~-~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk 446 (675)
T PHA02653 371 NKRAYIEEEKK-NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKN 446 (675)
T ss_pred cchhhhHHHHH-HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCc
Confidence 01111 22232322 235689999999999999999998752 247899999999874 5667777 6899
Q ss_pred ceEEEEecccccCCCCCCCcEEEEcc---CCC---------CHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHH
Q 010028 425 IQVLVSSDAMTRGMDVEGVNNVVNYD---KPA---------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 489 (520)
Q Consensus 425 ~~vLv~T~~~~~Gidl~~~~~VI~~~---~p~---------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~ 489 (520)
.+|||||+++++|+|+|++++||+++ .|. |.++|.||+||+||. ++|.|+.|+++++...+.++
T Consensus 447 ~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 447 PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 99999999999999999999999998 554 788999999999999 69999999998876554444
No 58
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.1e-34 Score=307.92 Aligned_cols=350 Identities=25% Similarity=0.336 Sum_probs=253.0
Q ss_pred CHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHH
Q 010028 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (520)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~ 115 (520)
..++..++.+.|+..|++||.+|++.+.+ |++++|+.|||||||.+|++|+++++... +..++|+|+||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~--~~a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRD--PSARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhC--cCccEEEEechhhhHh
Confidence 45568888888999999999999998766 89999999999999999999999999886 3458999999999999
Q ss_pred hHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccc
Q 010028 116 QVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 195 (520)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 195 (520)
+|.++++++ ...++. .+.+..++|++.......
T Consensus 130 DQ~~rl~~~-----------------------------------~~~~~~--~v~~~~y~Gdt~~~~r~~---------- 162 (851)
T COG1205 130 DQAERLREL-----------------------------------ISDLPG--KVTFGRYTGDTPPEERRA---------- 162 (851)
T ss_pred hHHHHHHHH-----------------------------------HHhCCC--cceeeeecCCCChHHHHH----------
Confidence 987774443 333333 578888888877555532
Q ss_pred cccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC---cccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccc
Q 010028 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 272 (520)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~---~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~ 272 (520)
...++++|++|||+++...+.+... ..++.+++||+||+|.. .-.++..+-.+++++....
T Consensus 163 -----------~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~---- 226 (851)
T COG1205 163 -----------IIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRL---- 226 (851)
T ss_pred -----------HHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHH----
Confidence 3446789999999999885554333 33677999999999975 3334555544544443311
Q ss_pred ccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhh
Q 010028 273 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (520)
.......|+|++|||+.. ................+..+. .+.....+...
T Consensus 227 ---------------------------~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~ 276 (851)
T COG1205 227 ---------------------------RRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG--SPRGLRYFVRR 276 (851)
T ss_pred ---------------------------hccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC--CCCCceEEEEe
Confidence 111235689999999964 444444444433333222221 11111111111
Q ss_pred cc---------CCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHH----HHHhhcC-CCceeEEEeccccCHHHHHHH
Q 010028 353 CE---------SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLC----TLLNHFG-ELRIKIKEYSGLQRQSVRSKT 416 (520)
Q Consensus 353 ~~---------~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~----~~L~~~~-~~~~~v~~~~~~~~~~~r~~~ 416 (520)
.+ .......+..+.... .+-++|+|+.++..++.+. +.+...+ .....+..+++++...+|.++
T Consensus 277 ~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~i 356 (851)
T COG1205 277 EPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRI 356 (851)
T ss_pred CCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHH
Confidence 11 112233333333332 5679999999999999996 3343333 334578899999999999999
Q ss_pred HHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCC-CHHHHHHHHhhcccCCCCCcEEEEEecchHH
Q 010028 417 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484 (520)
Q Consensus 417 ~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~-s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~ 484 (520)
...|+.|+..++++|++++-|+|+.+++.||.++.|. +..++.|++||+||.++.+.++++...+...
T Consensus 357 e~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d 425 (851)
T COG1205 357 EAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLD 425 (851)
T ss_pred HHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccc
Confidence 9999999999999999999999999999999999999 8999999999999999777777766654443
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.7e-34 Score=307.12 Aligned_cols=303 Identities=19% Similarity=0.245 Sum_probs=215.2
Q ss_pred CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhh
Q 010028 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 144 (520)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (520)
.+.++++++++|+||||||.++.+++++... .+.+++++.|++.+|.|+++.+
T Consensus 13 ~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rv----------------------- 65 (819)
T TIGR01970 13 ALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRL----------------------- 65 (819)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHH-----------------------
Confidence 3335789999999999999999999987652 3458999999999999964442
Q ss_pred cccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHH
Q 010028 145 FDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 224 (520)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ 224 (520)
...++...+..|+..++... .....++|+|+|++.|.+
T Consensus 66 ---------------a~~~~~~~g~~VGy~vr~~~---------------------------~~s~~t~I~v~T~G~Llr 103 (819)
T TIGR01970 66 ---------------ASQLGEAVGQTVGYRVRGEN---------------------------KVSRRTRLEVVTEGILTR 103 (819)
T ss_pred ---------------HHHhCCCcCcEEEEEEcccc---------------------------ccCCCCcEEEECCcHHHH
Confidence 12333334455554444321 112356899999999998
Q ss_pred HHhcCCCcccccccEEEeehHHH-HHHHHhhh-hHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCC
Q 010028 225 HINATRGFTLEHLCYLVVDETDR-LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 302 (520)
Q Consensus 225 ~l~~~~~~~~~~~~~lViDEah~-l~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (520)
.+.. ...++++++|||||+|. .++..+.- .+..+...++
T Consensus 104 ~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr------------------------------------- 144 (819)
T TIGR01970 104 MIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLR------------------------------------- 144 (819)
T ss_pred HHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcC-------------------------------------
Confidence 8875 24689999999999995 44433321 2233332222
Q ss_pred ccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcH-----HHHHHHHHhcCCCcEEEE
Q 010028 303 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVF 377 (520)
Q Consensus 303 ~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~~~~~~~~k~lIf 377 (520)
+..++|+||||+.... + ..++.++.++......+. ++.++.......+. ..+..++.. ..+++|||
T Consensus 145 -~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~~p----Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVF 215 (819)
T TIGR01970 145 -EDLKILAMSATLDGER--L-SSLLPDAPVVESEGRSFP----VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVF 215 (819)
T ss_pred -CCceEEEEeCCCCHHH--H-HHHcCCCcEEEecCccee----eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEE
Confidence 2457899999996432 2 334444333333322211 22222222222222 122333333 46789999
Q ss_pred ecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCC----
Q 010028 378 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA---- 453 (520)
Q Consensus 378 ~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~---- 453 (520)
+++..+++.+++.|++....++.+..+||+++..+|.++++.|++|+.+|||||+++++|||+|++++||+++.|.
T Consensus 216 lpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~y 295 (819)
T TIGR01970 216 LPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARF 295 (819)
T ss_pred ECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccc
Confidence 9999999999999987322458899999999999999999999999999999999999999999999999999874
Q ss_pred --------------CHHHHHHHHhhcccCCCCCcEEEEEecchHHH
Q 010028 454 --------------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485 (520)
Q Consensus 454 --------------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 485 (520)
|..++.||+||+||. ++|.||.++++.+...
T Consensus 296 d~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 296 DPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred ccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 345799999999999 6999999999876544
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3e-34 Score=304.79 Aligned_cols=345 Identities=25% Similarity=0.292 Sum_probs=248.1
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
+++.+...+...++..+.+.|+.++...+. +++|++|++|||+|||+.+++.+++.+.+. +.+++|++|+++||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHH
Confidence 678888888888999999999999766544 479999999999999999999999888764 45899999999999
Q ss_pred HhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccc
Q 010028 115 LQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 194 (520)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 194 (520)
.+.+++ +. .....+++|...+|+.....+
T Consensus 90 ~Ek~~~---------------------------------------~~-~~~~~GirV~~~TgD~~~~~~----------- 118 (766)
T COG1204 90 EEKYEE---------------------------------------FS-RLEELGIRVGISTGDYDLDDE----------- 118 (766)
T ss_pred HHHHHH---------------------------------------hh-hHHhcCCEEEEecCCcccchh-----------
Confidence 995444 33 223459999999998764432
Q ss_pred ccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccc
Q 010028 195 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274 (520)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~ 274 (520)
....++|+|+||+++-.++++ ....+..+++||+||+|.+.+...+..++.+........
T Consensus 119 -------------~l~~~~ViVtT~EK~Dsl~R~-~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~------ 178 (766)
T COG1204 119 -------------RLARYDVIVTTPEKLDSLTRK-RPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN------ 178 (766)
T ss_pred -------------hhccCCEEEEchHHhhHhhhc-CcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC------
Confidence 224679999999998777776 445788999999999999887778888888888766522
Q ss_pred ccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhcc
Q 010028 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 354 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
...+++.+|||++ +...+..+.-.++......+.....+...........
T Consensus 179 -----------------------------~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~ 228 (766)
T COG1204 179 -----------------------------ELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGAD 228 (766)
T ss_pred -----------------------------cceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEec
Confidence 2358999999995 5555555443333311111111111111111111111
Q ss_pred CC------CcHHHHHHHH-Hhc-CCCcEEEEecCHHHHHHHHHHHhhc----C--------------C------------
Q 010028 355 SK------LKPLYLVALL-QSL-GEEKCIVFTSSVESTHRLCTLLNHF----G--------------E------------ 396 (520)
Q Consensus 355 ~~------~k~~~l~~~~-~~~-~~~k~lIf~~s~~~~~~l~~~L~~~----~--------------~------------ 396 (520)
.. ...+.....+ ... .++.+||||+|++.+...++.++.. . .
T Consensus 229 ~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (766)
T COG1204 229 GKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEE 308 (766)
T ss_pred CccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHH
Confidence 11 1222333333 332 6789999999999999999988830 0 0
Q ss_pred ----CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEE----Ecc-----CCCCHHHHHHHHh
Q 010028 397 ----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV----NYD-----KPAYIKTYIHRAG 463 (520)
Q Consensus 397 ----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI----~~~-----~p~s~~~~~Q~~G 463 (520)
....+.++|++++..+|..+.+.|++|+++||+||+++++|+|+|.-.+|| .|+ .+-++-++.|++|
T Consensus 309 l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~G 388 (766)
T COG1204 309 LAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAG 388 (766)
T ss_pred HHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccC
Confidence 013478899999999999999999999999999999999999999555444 244 3446789999999
Q ss_pred hcccCCCC--CcEEEEE-ecchHHHH
Q 010028 464 RTARAGQL--GRCFTLL-HKDEVKRF 486 (520)
Q Consensus 464 R~~R~~~~--g~~i~~~-~~~~~~~~ 486 (520)
|+||.|-+ |.++++. +.++...+
T Consensus 389 RAGRPg~d~~G~~~i~~~~~~~~~~~ 414 (766)
T COG1204 389 RAGRPGYDDYGEAIILATSHDELEYL 414 (766)
T ss_pred cCCCCCcCCCCcEEEEecCccchhHH
Confidence 99999853 6666666 33343333
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.3e-34 Score=285.29 Aligned_cols=314 Identities=18% Similarity=0.177 Sum_probs=199.8
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchh
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLF 150 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (520)
+++|.||||||||.+++++++..+... .+.++++++|+++|+.|+++.+++++.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~------------------------ 54 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFG------------------------ 54 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhC------------------------
Confidence 578999999999999999999876543 456899999999999997666444311
Q ss_pred ccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHH-----hhccCCcEEEeCchHHHHH
Q 010028 151 ISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ-----ELQSAVDILVATPGRLMDH 225 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Ili~Tp~~l~~~ 225 (520)
. .+...+|....... ....... ... ..... ......+|+++||+++...
T Consensus 55 --------------~----~~~~~~~~~~~~~~-~~~~~~~------~~~-~~~~~~~~~~~~~~~~~I~v~T~~~l~~~ 108 (358)
T TIGR01587 55 --------------S----NLGLLHSSSSFKRI-KEMGDSE------EFE-HLFPLYIHSNDKLFLDPITVCTIDQVLKS 108 (358)
T ss_pred --------------c----ccEEeeccHHHHHH-hccCCch------hHH-HHHHHHhhchhhhhhCCeeeCCHHHHHHH
Confidence 1 12222332211000 0000000 000 00000 0112457999999999887
Q ss_pred HhcC-CC--cccc--cccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCC
Q 010028 226 INAT-RG--FTLE--HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 300 (520)
Q Consensus 226 l~~~-~~--~~~~--~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (520)
+... +. ..+. ..+++|+||+|.+.+..+.. +..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~---------------------------------- 153 (358)
T TIGR01587 109 VFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKD---------------------------------- 153 (358)
T ss_pred HhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHH----------------------------------
Confidence 7651 11 1111 23789999999987654433 4444444332
Q ss_pred CCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhh--hccCCCcHHHHHHHHHhc-CCCcEEEE
Q 010028 301 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL--ICESKLKPLYLVALLQSL-GEEKCIVF 377 (520)
Q Consensus 301 ~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~l~~~~~~~-~~~k~lIf 377 (520)
.+.+++++|||++.....+.......+........ .......+... ......+...+..++... .++++|||
T Consensus 154 ---~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 154 ---NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK--EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred ---cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc--cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 23478999999975444443322221111000000 00000111111 112234555566655543 57899999
Q ss_pred ecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHH----HHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCC
Q 010028 378 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK----TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 453 (520)
Q Consensus 378 ~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~----~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~ 453 (520)
|+++++++.+++.|++.+ ....+..+||+++..+|.+ +++.|++|+..+||||+++++|+|++ ++++|++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~-~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENA-PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhc-CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC-
Confidence 999999999999998764 2246899999999999876 48899999999999999999999997 7888888766
Q ss_pred CHHHHHHHHhhcccCCCC----CcEEEEEec
Q 010028 454 YIKTYIHRAGRTARAGQL----GRCFTLLHK 480 (520)
Q Consensus 454 s~~~~~Q~~GR~~R~~~~----g~~i~~~~~ 480 (520)
..+|+||+||+||.|+. |.+++|...
T Consensus 306 -~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 306 -IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred -HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 78999999999998853 367777654
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=8.9e-34 Score=304.99 Aligned_cols=305 Identities=20% Similarity=0.240 Sum_probs=214.8
Q ss_pred hhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHH
Q 010028 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEM 141 (520)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (520)
++..+.++++++++||||||||.++.+++++... ...+++++.|++.+|.|+++.+
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----~~~~ilvlqPrR~aA~qia~rv-------------------- 68 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----INGKIIMLEPRRLAARNVAQRL-------------------- 68 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----cCCeEEEECChHHHHHHHHHHH--------------------
Confidence 3333345789999999999999999998887532 2348999999999999954442
Q ss_pred hhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchH
Q 010028 142 CVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 221 (520)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~ 221 (520)
...++...+..++..+++... .....+|+|+||+.
T Consensus 69 ------------------a~~l~~~~g~~VGy~vr~~~~---------------------------~~~~t~I~v~T~G~ 103 (812)
T PRK11664 69 ------------------AEQLGEKPGETVGYRMRAESK---------------------------VGPNTRLEVVTEGI 103 (812)
T ss_pred ------------------HHHhCcccCceEEEEecCccc---------------------------cCCCCcEEEEChhH
Confidence 223344445666666654321 11245799999999
Q ss_pred HHHHHhcCCCcccccccEEEeehHHHH-HHHHh-hhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCC
Q 010028 222 LMDHINATRGFTLEHLCYLVVDETDRL-LREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 299 (520)
Q Consensus 222 l~~~l~~~~~~~~~~~~~lViDEah~l-~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (520)
+.+.+.. ...++++++|||||+|.. ++..+ ...+..+.+.++
T Consensus 104 Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr---------------------------------- 147 (812)
T PRK11664 104 LTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLR---------------------------------- 147 (812)
T ss_pred HHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC----------------------------------
Confidence 9998875 346899999999999962 22111 112222332221
Q ss_pred CCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHH-----HHHHHHHhcCCCcE
Q 010028 300 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKC 374 (520)
Q Consensus 300 ~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~~~~~~~~k~ 374 (520)
+..++++||||+... .+ ..++.++.++......+. +++++.......+.+ .+..++.. ..+.+
T Consensus 148 ----~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr~~p----V~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~i 215 (812)
T PRK11664 148 ----DDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGRSFP----VERRYQPLPAHQRFDEAVARATAELLRQ-ESGSL 215 (812)
T ss_pred ----ccceEEEEecCCCHH--HH-HHhcCCCCEEEecCcccc----ceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCE
Confidence 245789999999643 23 233443333333222211 223222222223332 22233332 46889
Q ss_pred EEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCC-
Q 010028 375 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA- 453 (520)
Q Consensus 375 lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~- 453 (520)
|||+++..+++.+++.|+.....++.+..+||+++..+|.+++..|++|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 216 LVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 216 LLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred EEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccc
Confidence 9999999999999999986323457899999999999999999999999999999999999999999999999988764
Q ss_pred -----------------CHHHHHHHHhhcccCCCCCcEEEEEecchHH
Q 010028 454 -----------------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484 (520)
Q Consensus 454 -----------------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~ 484 (520)
|..++.||+||+||. .+|.|+.++++.+..
T Consensus 296 ~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 296 ARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred ccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 346899999999999 599999999987654
No 63
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.9e-33 Score=285.88 Aligned_cols=374 Identities=20% Similarity=0.245 Sum_probs=264.5
Q ss_pred HHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc------cccccEEEEcCCHHHHHh
Q 010028 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 43 l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~------~~~~~vlil~Pt~~La~q 116 (520)
..-++|..++..|.++++.+.+ ++.+++||||||+|||..+++.++..+.++. ....++++++|.++||..
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~E 179 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAE 179 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHH
Confidence 3446889999999999998776 6899999999999999999999999887521 245689999999999999
Q ss_pred HHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccccc
Q 010028 117 VNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 196 (520)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~ 196 (520)
+.+.+.+-....++.|.-++|+.......
T Consensus 180 ---------------------------------------m~~~~~kkl~~~gi~v~ELTGD~ql~~te------------ 208 (1230)
T KOG0952|consen 180 ---------------------------------------MVDKFSKKLAPLGISVRELTGDTQLTKTE------------ 208 (1230)
T ss_pred ---------------------------------------HHHHHhhhcccccceEEEecCcchhhHHH------------
Confidence 44444444445589999999987644332
Q ss_pred ccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC---cccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccc
Q 010028 197 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273 (520)
Q Consensus 197 ~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~---~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~ 273 (520)
-..++|+|+||+.+ +.+.+.+. ..++.+++||+||+|.+ ....+..++.|..++...-
T Consensus 209 ------------i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEtiVaRtlr~v----- 269 (1230)
T KOG0952|consen 209 ------------IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLETIVARTLRLV----- 269 (1230)
T ss_pred ------------HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHHHHHHHHHHH-----
Confidence 13569999999995 55544332 23677899999999975 5566788888887765311
Q ss_pred cccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhc
Q 010028 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
......+++|++|||++ +..+++.+.-.+|..-....+....|-.+.+...-.
T Consensus 270 --------------------------essqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~ 322 (1230)
T KOG0952|consen 270 --------------------------ESSQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGI 322 (1230)
T ss_pred --------------------------HhhhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeecccccccceeeeEEee
Confidence 01113457899999995 555655544443221111111111122222211111
Q ss_pred cCC---CcHH-----HHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCC-----------C--c-------eeEEEe
Q 010028 354 ESK---LKPL-----YLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGE-----------L--R-------IKIKEY 404 (520)
Q Consensus 354 ~~~---~k~~-----~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~-----------~--~-------~~v~~~ 404 (520)
... .+.. +..+..... .+..++|||+++..+.+.++.|.+.+. + . ....+.
T Consensus 323 k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iH 402 (1230)
T KOG0952|consen 323 KGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIH 402 (1230)
T ss_pred ecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhc
Confidence 111 1111 122222222 567899999999999999998876321 0 1 347788
Q ss_pred ccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEc-----cCCC------CHHHHHHHHhhcccCC--CC
Q 010028 405 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY-----DKPA------YIKTYIHRAGRTARAG--QL 471 (520)
Q Consensus 405 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~-----~~p~------s~~~~~Q~~GR~~R~~--~~ 471 (520)
|++|...+|....+.|..|.++||+||..+++|+++|. .+||+= |... ++...+|.+|||||.. ..
T Consensus 403 hAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 403 HAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred ccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 99999999999999999999999999999999999994 555542 2221 3567889999999965 56
Q ss_pred CcEEEEEecchHHHHHHHHHHhcCCCCCcccCCchhhhhhhhccccCCC
Q 010028 472 GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 520 (520)
Q Consensus 472 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (520)
|.++++...+-+..|..++. ++..-+.++-..+.+.++++.-=|+|
T Consensus 482 G~giIiTt~dkl~~Y~sLl~---~~~piES~~~~~L~dnLnAEi~LgTV 527 (1230)
T KOG0952|consen 482 GEGIIITTRDKLDHYESLLT---GQNPIESQLLPCLIDNLNAEISLGTV 527 (1230)
T ss_pred ceEEEEecccHHHHHHHHHc---CCChhHHHHHHHHHHhhhhheeecee
Confidence 88998888888899988875 55555678888999999999887765
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.9e-32 Score=302.25 Aligned_cols=326 Identities=21% Similarity=0.280 Sum_probs=220.0
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
+|+ .|+++|.++++.++. |++++++||||+|||.. .++++..+.. .+.+++|++||++|+.|
T Consensus 77 ~G~-~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f-~l~~~~~l~~---~g~~alIL~PTreLa~Q--------- 138 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTF-GLVMSLYLAK---KGKKSYIIFPTRLLVEQ--------- 138 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHH-HHHHHHHHHh---cCCeEEEEeccHHHHHH---------
Confidence 466 899999999988776 99999999999999964 4444443332 36789999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch-HHHHHHHhhcccccccccCCchhH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDV 204 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 204 (520)
+...+..++...++.+..++|+... ..+... .
T Consensus 139 ------------------------------i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~-----------------~ 171 (1176)
T PRK09401 139 ------------------------------VVEKLEKFGEKVGCGVKILYYHSSLKKKEKEE-----------------F 171 (1176)
T ss_pred ------------------------------HHHHHHHHhhhcCceEEEEEccCCcchhHHHH-----------------H
Confidence 4555555555556777776666542 111111 0
Q ss_pred HHhhc-cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHH-----------Hhh-hhHHHHHHhhccCcccc
Q 010028 205 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-----------AYQ-AWLPTVLQLTRSDNENR 271 (520)
Q Consensus 205 ~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-----------~~~-~~l~~i~~~~~~~~~~~ 271 (520)
...+. ..++|+|+||+.+.+.+.. +....++++|+||||+++++ +|. +.+..+++.++.....
T Consensus 172 ~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~- 247 (1176)
T PRK09401 172 LERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY- 247 (1176)
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc-
Confidence 11122 4589999999999887762 44566999999999999862 342 4566666665431110
Q ss_pred cccccccccccccchhhhcccccccCCCCCCccchheeeecccccCC-chhhhhcccCCceeeecccccccCccccchhh
Q 010028 272 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYK 350 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 350 (520)
...+..+..+... .........|++++|||.++. .... .+.++..+..+... ....++.+.+
T Consensus 248 --------~~~~~~i~~l~~~-----i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~~ll~~~v~~~~-~~~rnI~~~y 310 (1176)
T PRK09401 248 --------EEIYEKIRELEEK-----IAELKDKKGVLVVSSATGRPRGNRVK---LFRELLGFEVGSPV-FYLRNIVDSY 310 (1176)
T ss_pred --------chhhhHHHHHHHh-----hhhcccCCceEEEEeCCCCccchHHH---HhhccceEEecCcc-cccCCceEEE
Confidence 0001111111100 000001156889999999753 2221 11222223322222 1233444444
Q ss_pred hhccCCCcHHHHHHHHHhcCCCcEEEEecCHHH---HHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceE
Q 010028 351 LICESKLKPLYLVALLQSLGEEKCIVFTSSVES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 427 (520)
Q Consensus 351 ~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~---~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (520)
.... .+.+.+..++.... .++||||++.+. ++.+++.|+..+ +.+..+||+| .+.+++|++|+.+|
T Consensus 311 i~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~V 379 (1176)
T PRK09401 311 IVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDV 379 (1176)
T ss_pred EEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCE
Confidence 4333 56667777776664 589999999877 999999999876 8999999999 23459999999999
Q ss_pred EEE----ecccccCCCCCC-CcEEEEccCCC------CHHHHHHHHhhcccC
Q 010028 428 LVS----SDAMTRGMDVEG-VNNVVNYDKPA------YIKTYIHRAGRTARA 468 (520)
Q Consensus 428 Lv~----T~~~~~Gidl~~-~~~VI~~~~p~------s~~~~~Q~~GR~~R~ 468 (520)
||| |+.++||+|+|+ +++||+|+.|. ....+.||+||+...
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999 689999999999 89999999997 567899999998643
No 65
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-32 Score=285.20 Aligned_cols=312 Identities=19% Similarity=0.198 Sum_probs=209.0
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..||+||.+|+..++... ..+..+|++|||+|||++.+..+ ..+ +.++|||||+..|++|
T Consensus 254 ~~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa-~~l------~k~tLILvps~~Lv~Q------------ 313 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAA-CTV------KKSCLVLCTSAVSVEQ------------ 313 (732)
T ss_pred CCcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHH-HHh------CCCEEEEeCcHHHHHH------------
Confidence 369999999999877521 12578999999999999886543 333 2469999999999999
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
|...+..|.......+..++|+.... .
T Consensus 314 ---------------------------W~~ef~~~~~l~~~~I~~~tg~~k~~--------------------------~ 340 (732)
T TIGR00603 314 ---------------------------WKQQFKMWSTIDDSQICRFTSDAKER--------------------------F 340 (732)
T ss_pred ---------------------------HHHHHHHhcCCCCceEEEEecCcccc--------------------------c
Confidence 55555555443345566666653210 1
Q ss_pred ccCCcEEEeCchHHHHHHhcC-------CCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccc
Q 010028 209 QSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 281 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~-------~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 281 (520)
....+|+|+|++++.....+. ..+.-..+++||+||||++.+..+.. ++..+..
T Consensus 341 ~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~----il~~l~a--------------- 401 (732)
T TIGR00603 341 HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRR----VLTIVQA--------------- 401 (732)
T ss_pred ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHH----HHHhcCc---------------
Confidence 123589999999875432211 01222468899999999987655433 3333222
Q ss_pred cccchhhhcccccccCCCCCCccchheeeecccccCCchhhhh-cccCCceeeecccc-----cc-----------cCcc
Q 010028 282 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHPLFLTTGET-----RY-----------KLPE 344 (520)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~l~~~~~~~~~~~-----~~-----------~~~~ 344 (520)
...+++|||+......... ..+-.|.++..... .+ ....
T Consensus 402 ------------------------~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~ 457 (732)
T TIGR00603 402 ------------------------HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTP 457 (732)
T ss_pred ------------------------CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCH
Confidence 1258899998643322211 11122322222110 00 0000
Q ss_pred c----------cchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHH
Q 010028 345 R----------LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412 (520)
Q Consensus 345 ~----------~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~ 412 (520)
. -........+..|+..+..+++.+ .+.++||||++...+..+++.|. +..+||.++..+
T Consensus 458 ~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~E 529 (732)
T TIGR00603 458 EFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQE 529 (732)
T ss_pred HHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHH
Confidence 0 001111222345566666666655 67899999999999999988773 345899999999
Q ss_pred HHHHHHHHHcC-CceEEEEecccccCCCCCCCcEEEEccCC-CCHHHHHHHHhhcccCCCCCcE-------EEEEecchH
Q 010028 413 RSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDEV 483 (520)
Q Consensus 413 r~~~~~~f~~g-~~~vLv~T~~~~~Gidl~~~~~VI~~~~p-~s~~~~~Q~~GR~~R~~~~g~~-------i~~~~~~~~ 483 (520)
|.++++.|+.| .+++||+|+++.+|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ +.|++.+..
T Consensus 530 R~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 530 RMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 99999999975 78999999999999999999999999987 5999999999999999866554 777777544
Q ss_pred H
Q 010028 484 K 484 (520)
Q Consensus 484 ~ 484 (520)
+
T Consensus 610 E 610 (732)
T TIGR00603 610 E 610 (732)
T ss_pred H
Confidence 3
No 66
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.4e-32 Score=310.88 Aligned_cols=362 Identities=17% Similarity=0.199 Sum_probs=239.2
Q ss_pred HHHHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 38 ~~~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
++.+.+.+ +|| .|++.|.+++..++. |+++++.||||+|||+.++++++... .++.++||++||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~----~~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA----LKGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH----hcCCeEEEEECHHHHHHH
Confidence 44555555 799 799999999998887 89999999999999996555544322 135689999999999999
Q ss_pred HHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc--ccceEEeccCccchHHHHHHHhhccccc
Q 010028 117 VNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA--VGLSVGLAVGQSSIADEISELIKRPKLE 194 (520)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 194 (520)
+++.+ ..+... .++++..++|+.+..++...+..
T Consensus 138 i~~~l---------------------------------------~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~----- 173 (1638)
T PRK14701 138 TVEKI---------------------------------------ESFCEKANLDVRLVYYHSNLRKKEKEEFLER----- 173 (1638)
T ss_pred HHHHH---------------------------------------HHHHhhcCCceeEEEEeCCCCHHHHHHHHHH-----
Confidence 65553 333332 25677888898876655332211
Q ss_pred ccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHH-----------HhhhhHHH-HHH
Q 010028 195 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-----------AYQAWLPT-VLQ 262 (520)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-----------~~~~~l~~-i~~ 262 (520)
.....++|+|+||+.+.+.+... . ...++++||||||+|+.+ +|.+.+.. +++
T Consensus 174 ------------l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~ 238 (1638)
T PRK14701 174 ------------IENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWK 238 (1638)
T ss_pred ------------HhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHH
Confidence 11235899999999988766541 1 267899999999999752 33333321 222
Q ss_pred hhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccC
Q 010028 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 342 (520)
.+....... ..........+... ....+......+++|||.+..... . ..+.++..+..+.....
T Consensus 239 il~~~~~~~-------~~~~~~~~~~l~~~-----~~~~~~~~~~ll~~SAT~~~r~~~-~-~l~~~~l~f~v~~~~~~- 303 (1638)
T PRK14701 239 IIYLKKQGN-------IEDAMEKREILNKE-----IEKIGNKIGCLIVASATGKAKGDR-V-KLYRELLGFEVGSGRSA- 303 (1638)
T ss_pred hhhcccccc-------cchhhhhhhhhhhh-----hhhcCCCccEEEEEecCCCchhHH-H-HHhhcCeEEEecCCCCC-
Confidence 221100000 00000000000000 000011112257799998753111 1 22345555555544432
Q ss_pred ccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHH---HHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHH
Q 010028 343 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~---~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~ 419 (520)
...+.+.+.......+ ..+..+++.. +..+||||++.+. |+.+++.|...| +++..+||+ |...+++
T Consensus 304 lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~G---i~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 304 LRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDG---FKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCC---CeEEEecch-----HHHHHHH
Confidence 3344444433332223 4666777666 5689999999875 589999999866 899999984 8899999
Q ss_pred HHcCCceEEEEe----cccccCCCCCC-CcEEEEccCCC---CHHHHHHHH-------------hhcccCCCCCcEEEEE
Q 010028 420 FREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKPA---YIKTYIHRA-------------GRTARAGQLGRCFTLL 478 (520)
Q Consensus 420 f~~g~~~vLv~T----~~~~~Gidl~~-~~~VI~~~~p~---s~~~~~Q~~-------------GR~~R~~~~g~~i~~~ 478 (520)
|++|+.+||||| +.++||||+|+ +++||++|.|. +...|.|-. ||++|.|..+.+...+
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999999999 58999999999 99999999998 777666554 9999999887777666
Q ss_pred ecchHHHHHHHHHH
Q 010028 479 HKDEVKRFKKLLQK 492 (520)
Q Consensus 479 ~~~~~~~~~~~~~~ 492 (520)
...+...+++++.+
T Consensus 454 ~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 454 FPEDVEFLRSILKD 467 (1638)
T ss_pred HHHHHHHHHHHhcc
Confidence 67777777777664
No 67
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.9e-31 Score=294.80 Aligned_cols=317 Identities=20% Similarity=0.263 Sum_probs=203.4
Q ss_pred HHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 38 ~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
++.+.+.+.....|+++|..++..++. |++++++||||+|||. +.++++..+.. .+.+++|++||++||.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHHH
Confidence 344445443334899999999988776 9999999999999997 55666655433 357899999999999995
Q ss_pred HhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccce---EEeccCccchHHHHHHHhhccccc
Q 010028 118 NSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS---VGLAVGQSSIADEISELIKRPKLE 194 (520)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~g~~~~~~~~~~~~~~~~~~ 194 (520)
++. +..+....++. ++.++|+.+...+...+..
T Consensus 138 ~~~---------------------------------------l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~----- 173 (1171)
T TIGR01054 138 AEK---------------------------------------ISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMER----- 173 (1171)
T ss_pred HHH---------------------------------------HHHHHHhcCCceeeeeeecCCCCHHHHHHHHHH-----
Confidence 444 44444333433 3457788776554332211
Q ss_pred ccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHH-----------Hhhh-hHHHHHH
Q 010028 195 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-----------AYQA-WLPTVLQ 262 (520)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-----------~~~~-~l~~i~~ 262 (520)
....+++|+|+||+.+...+.... . .++++|+||||+|++. +|.+ .+..+++
T Consensus 174 ------------l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~ 237 (1171)
T TIGR01054 174 ------------IENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWK 237 (1171)
T ss_pred ------------HhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHH
Confidence 112358999999999988766522 1 7899999999999873 2332 2444443
Q ss_pred hhccCcccccccccccccccccchhhhcccccccCCCCCCccch--heeeecccc-cCCchhhhhcccCCceeeeccccc
Q 010028 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL--VKMVLSATL-TQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~SaT~-~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
.++..... ............ .. ...... +++++|||. +...... ...++..+......
T Consensus 238 ~~~~~~~~----------~~~~~~~~~~~~-----~~-~~~~~~q~~li~~SAT~~p~~~~~~---l~r~ll~~~v~~~~ 298 (1171)
T TIGR01054 238 LIRLRLKL----------YRALHAKKRLEL-----LE-AIPGKKRGCLIVSSATGRPRGKRAK---LFRELLGFEVGGGS 298 (1171)
T ss_pred Hhhhcccc----------chHHHHHHHHHH-----HH-hhhhccCcEEEEEeCCCCccccHHH---HcccccceEecCcc
Confidence 33211000 000000000000 00 000112 356789994 4333221 12233333333322
Q ss_pred ccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCH---HHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHH
Q 010028 340 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV---ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 416 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~---~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~ 416 (520)
....++.+.+..... +...+..+++.. +.++||||++. +.|+.++..|++.+ +.+..+||+++. ..
T Consensus 299 -~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g---~~a~~lhg~~~~----~~ 367 (1171)
T TIGR01054 299 -DTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHG---VKAVAYHATKPK----ED 367 (1171)
T ss_pred -ccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCC---ceEEEEeCCCCH----HH
Confidence 223344444332222 245566666665 46899999999 99999999999765 899999999963 78
Q ss_pred HHHHHcCCceEEEEe----cccccCCCCCC-CcEEEEccCC
Q 010028 417 LKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP 452 (520)
Q Consensus 417 ~~~f~~g~~~vLv~T----~~~~~Gidl~~-~~~VI~~~~p 452 (520)
++.|++|+.+||||| +.+++|+|+|+ +++||++|.|
T Consensus 368 l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 368 YEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 999999999999995 89999999999 8999998877
No 68
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=274.66 Aligned_cols=327 Identities=25% Similarity=0.303 Sum_probs=220.4
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
.-.+|+||.+..+-+ + +++++|++|||+|||+++...++.++... +..++||++|++.|+.|+.
T Consensus 60 ~~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~--p~~KiVF~aP~~pLv~QQ~--------- 123 (746)
T KOG0354|consen 60 NLELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWR--PKGKVVFLAPTRPLVNQQI--------- 123 (746)
T ss_pred cccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcC--CcceEEEeeCCchHHHHHH---------
Confidence 347999998865433 3 89999999999999999999888888775 4579999999999999963
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
..+..++.. -.+....|+....... -.
T Consensus 124 ------------------------------a~~~~~~~~--~~~T~~l~~~~~~~~r---------------------~~ 150 (746)
T KOG0354|consen 124 ------------------------------ACFSIYLIP--YSVTGQLGDTVPRSNR---------------------GE 150 (746)
T ss_pred ------------------------------HHHhhccCc--ccceeeccCccCCCch---------------------hh
Confidence 333333333 2333333442211111 12
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhhhHHHHHHhhccCcccccccccccccccccch
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 286 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (520)
+....+|+++||+.+.+.+.+.....++.+.++||||||+-.. ..|...++.++..-..
T Consensus 151 i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~-------------------- 210 (746)
T KOG0354|consen 151 IVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ-------------------- 210 (746)
T ss_pred hhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc--------------------
Confidence 3346699999999999999886655579999999999997432 2233444444443221
Q ss_pred hhhcccccccCCCCCCccchheeeecccccCCchhhhhc----c--cC-------------------Ccee---------
Q 010028 287 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL----D--LH-------------------HPLF--------- 332 (520)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~----~--l~-------------------~~~~--------- 332 (520)
..|++++|||+..+....... . +. .|.-
T Consensus 211 ------------------~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~ 272 (746)
T KOG0354|consen 211 ------------------GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIE 272 (746)
T ss_pred ------------------cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhh
Confidence 227899999988543321110 0 00 0000
Q ss_pred -------------------eeccc---------------ccccCccccc-------------------------------
Q 010028 333 -------------------LTTGE---------------TRYKLPERLE------------------------------- 347 (520)
Q Consensus 333 -------------------~~~~~---------------~~~~~~~~~~------------------------------- 347 (520)
..... .....+..-.
T Consensus 273 ~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~ 352 (746)
T KOG0354|consen 273 DPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLE 352 (746)
T ss_pred hhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhh
Confidence 00000 0000000000
Q ss_pred ---------h-----------------------hhhhc-cCCCcHHHHHHHHHh----cCCCcEEEEecCHHHHHHHHHH
Q 010028 348 ---------S-----------------------YKLIC-ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTL 390 (520)
Q Consensus 348 ---------~-----------------------~~~~~-~~~~k~~~l~~~~~~----~~~~k~lIf~~s~~~~~~l~~~ 390 (520)
. +.... ...+|++.+.+++.. .+..++||||.++..|..+.++
T Consensus 353 ~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~ 432 (746)
T KOG0354|consen 353 DFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKW 432 (746)
T ss_pred hhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHH
Confidence 0 00000 012344444444433 2567999999999999999999
Q ss_pred HhhcCCCceeEEEecc--------ccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHH
Q 010028 391 LNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 462 (520)
Q Consensus 391 L~~~~~~~~~v~~~~~--------~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~ 462 (520)
|.....++.+...+-| +|++.+..++++.|++|+++|||||++.++|+|++.|++||-||...|+...+||.
T Consensus 433 l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrr 512 (746)
T KOG0354|consen 433 LLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRR 512 (746)
T ss_pred HHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHh
Confidence 9854344455544443 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCcEEEEEecchH
Q 010028 463 GRTARAGQLGRCFTLLHKDEV 483 (520)
Q Consensus 463 GR~~R~~~~g~~i~~~~~~~~ 483 (520)
|| ||.. .|++++++...+.
T Consensus 513 GR-gRa~-ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 513 GR-GRAR-NSKCVLLTTGSEV 531 (746)
T ss_pred cc-cccc-CCeEEEEEcchhH
Confidence 99 9975 8899988886443
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.4e-31 Score=262.43 Aligned_cols=315 Identities=18% Similarity=0.215 Sum_probs=193.0
Q ss_pred hhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccc
Q 010028 54 VQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGL 132 (520)
Q Consensus 54 ~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~ 132 (520)
+|.++++.+.+ .+ ..++++||||+|||.+++++++. ...++++++|+++|++|+++.+++
T Consensus 1 hQ~~~~~~~~~---~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~--------- 61 (357)
T TIGR03158 1 HQVATFEALQS---KDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKE--------- 61 (357)
T ss_pred CHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHH---------
Confidence 69999998876 22 34788999999999999998884 234689999999999998777444
Q ss_pred cchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhh-cccccccccCCchhHHH-hhcc
Q 010028 133 IADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-RPKLEAGICYDPEDVLQ-ELQS 210 (520)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 210 (520)
.+..+....+..+..+.|..... .+.+.. ......+... ....+. ....
T Consensus 62 --------------------------~~~~~~~~~~~~v~~~~g~~~~d--~~~~~~~~~~~~~g~~~-~~~~r~~~~~~ 112 (357)
T TIGR03158 62 --------------------------FVDVFKPERDVNLLHVSKATLKD--IKEYANDKVGSSKGEKL-YNLLRNPIGTS 112 (357)
T ss_pred --------------------------HHHhcCCCCCceEEEecCCchHH--HHHhhhhhcccCccchh-hhhHHHHHhcC
Confidence 33333333456677766653222 111110 0000000000 000111 1234
Q ss_pred CCcEEEeCchHHHHHHhcC---CC-c---ccccccEEEeehHHHHHHHHhhhh-----HHHHHHhhccCccccccccccc
Q 010028 211 AVDILVATPGRLMDHINAT---RG-F---TLEHLCYLVVDETDRLLREAYQAW-----LPTVLQLTRSDNENRFSDASTF 278 (520)
Q Consensus 211 ~~~Ili~Tp~~l~~~l~~~---~~-~---~~~~~~~lViDEah~l~~~~~~~~-----l~~i~~~~~~~~~~~~~~~~~~ 278 (520)
.+.|++|||+.+..++... +. . .+.+++++||||+|.+........ ...++....
T Consensus 113 ~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~------------- 179 (357)
T TIGR03158 113 TPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE------------- 179 (357)
T ss_pred CCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhh-------------
Confidence 6889999999997665431 11 1 257899999999998643221111 111111111
Q ss_pred ccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcc--cCCceeeecccccccCc-------------
Q 010028 279 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD--LHHPLFLTTGETRYKLP------------- 343 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~------------- 343 (520)
...+++++|||+++......... ...+.....+.. ...+
T Consensus 180 -------------------------~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~-~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 180 -------------------------CRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEK-YQFPDNPELEADNKTQS 233 (357)
T ss_pred -------------------------cCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcc-cccCCChhhhccccccc
Confidence 12378999999976555544332 333332211110 0000
Q ss_pred -----cccchhhhhccCCCcHHHHH---H----HHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHH
Q 010028 344 -----ERLESYKLICESKLKPLYLV---A----LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 411 (520)
Q Consensus 344 -----~~~~~~~~~~~~~~k~~~l~---~----~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~ 411 (520)
..+.+.... ....+...+. + .++...++++||||++++.++.++..|++.+ .+..+..+||.++..
T Consensus 234 ~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 234 FRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKK 311 (357)
T ss_pred cceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHH
Confidence 112221111 2222332222 2 2222356799999999999999999998753 235778899999998
Q ss_pred HHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcc
Q 010028 412 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 466 (520)
Q Consensus 412 ~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~ 466 (520)
+|.+. ++.+|||||+++++|+|++.. +|| ++ |.+...|+||+||+|
T Consensus 312 ~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 312 DRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 88654 378999999999999999976 555 44 889999999999986
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6.5e-31 Score=288.91 Aligned_cols=322 Identities=24% Similarity=0.301 Sum_probs=220.2
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
...|++||.++...++. ++.++++|||+|||+++++++...+. ..+.++||++||++|+.|+++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~---~~~~~vLvl~Pt~~L~~Q~~~~------- 77 (773)
T PRK13766 13 TIEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH---KKGGKVLILAPTKPLVEQHAEF------- 77 (773)
T ss_pred cCCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH---hCCCeEEEEeCcHHHHHHHHHH-------
Confidence 45899999998877654 38999999999999999887777663 2456899999999999995444
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
+..+....+.++..++|+.+...+. .
T Consensus 78 --------------------------------~~~~~~~~~~~v~~~~g~~~~~~r~----------------------~ 103 (773)
T PRK13766 78 --------------------------------FRKFLNIPEEKIVVFTGEVSPEKRA----------------------E 103 (773)
T ss_pred --------------------------------HHHHhCCCCceEEEEeCCCCHHHHH----------------------H
Confidence 3333222245677777776654332 2
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchh
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 287 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
....++|+|+||+.+...+.. +...+.++++|||||||++........+ ........
T Consensus 104 ~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i---~~~~~~~~------------------- 160 (773)
T PRK13766 104 LWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYI---AERYHEDA------------------- 160 (773)
T ss_pred HHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHH---HHHHHhcC-------------------
Confidence 234568999999999877765 3467788999999999987543222222 22111100
Q ss_pred hhcccccccCCCCCCccchheeeecccccCCchhhhh----cc-----------------cCCceeee--c--cc-----
Q 010028 288 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ----LD-----------------LHHPLFLT--T--GE----- 337 (520)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~----~~-----------------l~~~~~~~--~--~~----- 337 (520)
....++++|||+......+.. .+ +..+.+.. . ..
T Consensus 161 ----------------~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i 224 (773)
T PRK13766 161 ----------------KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEI 224 (773)
T ss_pred ----------------CCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHH
Confidence 122467778886433211100 00 00000000 0 00
Q ss_pred -------------------ccccCc--------------------c--c-------------------------------
Q 010028 338 -------------------TRYKLP--------------------E--R------------------------------- 345 (520)
Q Consensus 338 -------------------~~~~~~--------------------~--~------------------------------- 345 (520)
...... . .
T Consensus 225 ~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 304 (773)
T PRK13766 225 RDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALR 304 (773)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 000000 0 0
Q ss_pred -------------------------------cchhhhhccCCCcHHHHHHHHHh----cCCCcEEEEecCHHHHHHHHHH
Q 010028 346 -------------------------------LESYKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTL 390 (520)
Q Consensus 346 -------------------------------~~~~~~~~~~~~k~~~l~~~~~~----~~~~k~lIf~~s~~~~~~l~~~ 390 (520)
+...........|...+..++.. ..++++||||++..++..+++.
T Consensus 305 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~ 384 (773)
T PRK13766 305 RYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDL 384 (773)
T ss_pred HHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHH
Confidence 00000001224566666666654 4678999999999999999999
Q ss_pred HhhcCCCceeEEEeccc--------cCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHH
Q 010028 391 LNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 462 (520)
Q Consensus 391 L~~~~~~~~~v~~~~~~--------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~ 462 (520)
|...+ +.+..+||. ++..+|.+++++|++|+.++||+|+++++|+|+|++++||+|++|++...|+||+
T Consensus 385 L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~ 461 (773)
T PRK13766 385 LEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRK 461 (773)
T ss_pred HHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 97655 667777775 8889999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCcEEEEEecc
Q 010028 463 GRTARAGQLGRCFTLLHKD 481 (520)
Q Consensus 463 GR~~R~~~~g~~i~~~~~~ 481 (520)
||+||.+ .|.+++++..+
T Consensus 462 GR~gR~~-~~~v~~l~~~~ 479 (773)
T PRK13766 462 GRTGRQE-EGRVVVLIAKG 479 (773)
T ss_pred cccCcCC-CCEEEEEEeCC
Confidence 9999987 58888888753
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.5e-31 Score=273.36 Aligned_cols=354 Identities=21% Similarity=0.239 Sum_probs=237.7
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|. .|++.|..++..+.. |+ +..+.||+|||+++.+|++.+... +..++|++||+.||.|
T Consensus 100 lg~-~p~~VQ~~~~~~ll~----G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptreLA~q--------- 159 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLS----GR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVNDYLAER--------- 159 (656)
T ss_pred hCC-CCChHHHHHHHHHhC----CC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcHHHHHH---------
Confidence 465 899999999887664 66 899999999999999999987653 4589999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
....+..+....++++++++|+.+...+.
T Consensus 160 ------------------------------dae~~~~l~~~lGlsv~~i~gg~~~~~r~--------------------- 188 (656)
T PRK12898 160 ------------------------------DAELMRPLYEALGLTVGCVVEDQSPDERR--------------------- 188 (656)
T ss_pred ------------------------------HHHHHHHHHhhcCCEEEEEeCCCCHHHHH---------------------
Confidence 45555666666789999999997643332
Q ss_pred HhhccCCcEEEeCchHH-HHHHhcCCC------------------------cccccccEEEeehHHHHH-H---------
Q 010028 206 QELQSAVDILVATPGRL-MDHINATRG------------------------FTLEHLCYLVVDETDRLL-R--------- 250 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l-~~~l~~~~~------------------------~~~~~~~~lViDEah~l~-~--------- 250 (520)
...+++|+++|...| .+.|..+-. .-...+.++||||+|.++ +
T Consensus 189 --~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis 266 (656)
T PRK12898 189 --AAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIIS 266 (656)
T ss_pred --HHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEE
Confidence 224679999999877 444443211 113567899999999753 1
Q ss_pred --------HHhhhhHHHHHHhhccCccccc---------c--------cccccccccccch-------------------
Q 010028 251 --------EAYQAWLPTVLQLTRSDNENRF---------S--------DASTFLPSAFGSL------------------- 286 (520)
Q Consensus 251 --------~~~~~~l~~i~~~~~~~~~~~~---------~--------~~~~~~~~~~~~~------------------- 286 (520)
.....++..+...+........ . .....++..+...
T Consensus 267 ~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~ 346 (656)
T PRK12898 267 APAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRR 346 (656)
T ss_pred CCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhc
Confidence 1122222333332221100000 0 0000000000000
Q ss_pred -----------hhhc-ccccccCCCCCCc---------------------------------cchheeeecccccCCchh
Q 010028 287 -----------KTIR-RCGVERGFKDKPY---------------------------------PRLVKMVLSATLTQDPNK 321 (520)
Q Consensus 287 -----------~~~~-~~~~~~~~~~~~~---------------------------------~~~~~i~~SaT~~~~~~~ 321 (520)
..+. .+|... ....+ ...++.+||+|.......
T Consensus 347 d~dYiV~d~~V~ivD~~TGR~~--~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~E 424 (656)
T PRK12898 347 DEHYIVRDGKVVIVDEFTGRVM--PDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGE 424 (656)
T ss_pred CCceEEECCeEEEEECCCCeEC--CCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHH
Confidence 0000 000000 00000 012478899999866666
Q ss_pred hhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCce
Q 010028 322 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRI 399 (520)
Q Consensus 322 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~ 399 (520)
+...+..++..+..... .. ....+..+.++...|...+...+... .+.++||||+|...++.++..|...+ +
T Consensus 425 l~~~y~l~vv~IPt~kp--~~-r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i 498 (656)
T PRK12898 425 LWSVYGLPVVRIPTNRP--SQ-RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAG---L 498 (656)
T ss_pred HHHHHCCCeEEeCCCCC--cc-ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---C
Confidence 77666666655443322 11 11223334455566888888888764 35689999999999999999999876 8
Q ss_pred eEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCC---CCc-----EEEEccCCCCHHHHHHHHhhcccCCCC
Q 010028 400 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQL 471 (520)
Q Consensus 400 ~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~---~~~-----~VI~~~~p~s~~~~~Q~~GR~~R~~~~ 471 (520)
.+..+||.++. |+..+..|+.+...|+|||+++++|+|++ ++. +||+++.|.|...|.||+||+||.|.+
T Consensus 499 ~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~ 576 (656)
T PRK12898 499 PHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDP 576 (656)
T ss_pred CEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCC
Confidence 89999998754 55555666666678999999999999999 565 999999999999999999999999999
Q ss_pred CcEEEEEecch
Q 010028 472 GRCFTLLHKDE 482 (520)
Q Consensus 472 g~~i~~~~~~~ 482 (520)
|.+++|++.+|
T Consensus 577 G~s~~~is~eD 587 (656)
T PRK12898 577 GSYEAILSLED 587 (656)
T ss_pred eEEEEEechhH
Confidence 99999999765
No 72
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.98 E-value=1.2e-31 Score=252.60 Aligned_cols=304 Identities=24% Similarity=0.352 Sum_probs=221.1
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
.+..+|+-|+++|++|.++.++++ ........++-.+..||...
T Consensus 286 ap~avivepsrelaEqt~N~i~~F------------------------------------k~h~~np~~r~lLmiggv~~ 329 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEF------------------------------------KMHTSNPEVRSLLMIGGVLK 329 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHH------------------------------------HhhcCChhhhhhhhhhhHHh
Confidence 356899999999999966653332 22223334555566777666
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+.++ +.++.+|+++||+++.+.+.. +...+....++|+||++.++..++.+.+.++
T Consensus 330 r~Q~~q---------------------l~~g~~ivvGtpgRl~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~ 387 (725)
T KOG0349|consen 330 RTQCKQ---------------------LKDGTHIVVGTPGRLLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRF 387 (725)
T ss_pred HHHHHH---------------------hhcCceeeecCchhhhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHH
Confidence 666554 446789999999999998887 4567888899999999999998998888888
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccC-CchhhhhcccCCceeeeccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
...++.-..+. .+.|.+++|||+.. ++..+....+..|.-+......
T Consensus 388 h~qip~~tsdg--------------------------------~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD 435 (725)
T KOG0349|consen 388 HGQIPHMTSDG--------------------------------FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED 435 (725)
T ss_pred hccchhhhcCC--------------------------------cccccceeeeEEeEEEeeehhhhhccCceeEeccccc
Confidence 87776533321 34578999999863 2222333333333222221110
Q ss_pred ccCccccchhhhhcc---------------------------------------CCCcHHHHHHHHHhcCCCcEEEEecC
Q 010028 340 YKLPERLESYKLICE---------------------------------------SKLKPLYLVALLQSLGEEKCIVFTSS 380 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~---------------------------------------~~~k~~~l~~~~~~~~~~k~lIf~~s 380 (520)
.+++.++++...+. ...|-++-...++.+.-.++||||.+
T Consensus 436 -~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrt 514 (725)
T KOG0349|consen 436 -LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRT 514 (725)
T ss_pred -ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEec
Confidence 11111111100000 00112233344566677899999999
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHH
Q 010028 381 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 460 (520)
Q Consensus 381 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q 460 (520)
..+|..+.+++++.+..-+...++||+..+.||.+.++.|+++..+.||||++..+|+|+.++.++|+.-+|.....|+|
T Consensus 515 k~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvh 594 (725)
T KOG0349|consen 515 KQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVH 594 (725)
T ss_pred cccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhh
Confidence 99999999999998877788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 461 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 461 ~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
|+||+||..+-|.+|.++.....+.+..+++.-.+
T Consensus 595 rigrvgraermglaislvat~~ekvwyh~c~srgr 629 (725)
T KOG0349|consen 595 RIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGR 629 (725)
T ss_pred hhhccchhhhcceeEEEeeccchheeehhhhccCC
Confidence 99999999989999999877666666666554433
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=1.1e-30 Score=275.26 Aligned_cols=356 Identities=17% Similarity=0.203 Sum_probs=229.9
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|. .|++.|..+...+. .|+ +..+.||+|||+++.+|++.+... +..+++++||+.||.|
T Consensus 75 ~g~-~p~~vQl~~~~~l~----~G~--Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~LA~q--------- 134 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLH----EGN--IAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDYLAKR--------- 134 (790)
T ss_pred hCC-CCchHHHHhHHHHc----CCc--eeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHHHHHH---------
Confidence 465 88888877755432 344 999999999999999999866553 4579999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch-HHHHHHHhhcccccccccCCchhH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDV 204 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 204 (520)
....+..+....++++++..|+.+. .+...
T Consensus 135 ------------------------------d~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~------------------- 165 (790)
T PRK09200 135 ------------------------------DAEEMGQVYEFLGLTVGLNFSDIDDASEKKA------------------- 165 (790)
T ss_pred ------------------------------HHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-------------------
Confidence 5555666677779999999999873 33321
Q ss_pred HHhhccCCcEEEeCchHH-HHHHhcCC-----CcccccccEEEeehHHHHHH----------------HHhhhhHHHHHH
Q 010028 205 LQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLLR----------------EAYQAWLPTVLQ 262 (520)
Q Consensus 205 ~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~~lViDEah~l~~----------------~~~~~~l~~i~~ 262 (520)
...++|++|||+.+ .+.+..+- ......+.++|+||||.++= ..+...+..+..
T Consensus 166 ----~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~ 241 (790)
T PRK09200 166 ----IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVK 241 (790)
T ss_pred ----hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHH
Confidence 13579999999888 45444321 13457789999999998631 112233333333
Q ss_pred hhccCccccccccc--c--------------cccccccc----h-hhhccccc-------------------------cc
Q 010028 263 LTRSDNENRFSDAS--T--------------FLPSAFGS----L-KTIRRCGV-------------------------ER 296 (520)
Q Consensus 263 ~~~~~~~~~~~~~~--~--------------~~~~~~~~----~-~~~~~~~~-------------------------~~ 296 (520)
.+.......+.... . ..+..+.. + ..+..... .+
T Consensus 242 ~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr 321 (790)
T PRK09200 242 TLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGR 321 (790)
T ss_pred hcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCc
Confidence 33211000000000 0 00000000 0 00000000 00
Q ss_pred CCCCCCc---------------------------------cchheeeecccccCCchhhhhcccCCceeeecccccccCc
Q 010028 297 GFKDKPY---------------------------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 343 (520)
Q Consensus 297 ~~~~~~~---------------------------------~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 343 (520)
......+ ...++.+||+|.......+.+ .++-.++.+....+...
T Consensus 322 ~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~--~Y~l~v~~IPt~kp~~r 399 (790)
T PRK09200 322 VLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE--VYNMEVVQIPTNRPIIR 399 (790)
T ss_pred CCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH--HhCCcEEECCCCCCccc
Confidence 0000000 012366677776433333322 22223333333322222
Q ss_pred cccchhhhhccCCCcHHHHHHHHHh--cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHH
Q 010028 344 ERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421 (520)
Q Consensus 344 ~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~ 421 (520)
..... ........|...+...+.. ..+.++||||+|...++.++..|...+ +.+..+||.+...++..+...++
T Consensus 400 ~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~ 475 (790)
T PRK09200 400 IDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQ 475 (790)
T ss_pred ccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCC
Confidence 11111 1223445677778777765 367789999999999999999999876 88999999999888877777766
Q ss_pred cCCceEEEEecccccCCCC---CCCc-----EEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 422 EGKIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 422 ~g~~~vLv~T~~~~~Gidl---~~~~-----~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
.| .|+|||++++||+|+ |++. +||+++.|.|...|.||+||+||.|.+|.++.|++.+|
T Consensus 476 ~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 476 KG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred CC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 55 799999999999999 6888 99999999999999999999999999999999998755
No 74
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.98 E-value=1.3e-30 Score=272.18 Aligned_cols=370 Identities=18% Similarity=0.199 Sum_probs=229.5
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.++|+|.+++..+.- ++..++.++||+|||+++.+|++.+.+. +..++|++|++.||.|
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL~----g~~V~VVTpn~yLA~R------------- 126 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNALT----GKGAMLVTTNDYLAKR------------- 126 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhhc----CCceEEeCCCHHHHHH-------------
Confidence 456666666665433 3346999999999999999998766654 3469999999999999
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
....+..+....++.+.+.+++......... .....
T Consensus 127 --------------------------dae~m~~l~~~LGLsv~~~~~~s~~~~~~~~------------------~rr~~ 162 (762)
T TIGR03714 127 --------------------------DAEEMGPVYEWLGLTVSLGVVDDPDEEYDAN------------------EKRKI 162 (762)
T ss_pred --------------------------HHHHHHHHHhhcCCcEEEEECCCCccccCHH------------------HHHHh
Confidence 4455556666668888877765221111000 01122
Q ss_pred cCCcEEEeCchHH-HHHHhcC-----CCcccccccEEEeehHHHHHHH----------------HhhhhHHHHHHhhccC
Q 010028 210 SAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD 267 (520)
Q Consensus 210 ~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~~~~~lViDEah~l~~~----------------~~~~~l~~i~~~~~~~ 267 (520)
.+++|++|||+.| .+.+..+ ....+..+.++|+||||.++-. .....+..+...+...
T Consensus 163 y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~ 242 (762)
T TIGR03714 163 YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKED 242 (762)
T ss_pred CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCC
Confidence 4689999999999 4555321 2234678899999999998532 1222333333333221
Q ss_pred cc--------c-ccccc-----ccc--ccccccc-----hhhh-----------------cccc--------cccCCCCC
Q 010028 268 NE--------N-RFSDA-----STF--LPSAFGS-----LKTI-----------------RRCG--------VERGFKDK 301 (520)
Q Consensus 268 ~~--------~-~~~~~-----~~~--~~~~~~~-----~~~~-----------------~~~~--------~~~~~~~~ 301 (520)
.. . .+.+. ..+ .+.++.. ...+ ...+ -.+....+
T Consensus 243 ~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr 322 (762)
T TIGR03714 243 VDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGT 322 (762)
T ss_pred CCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCC
Confidence 00 0 00000 000 0000000 0000 0000 00000000
Q ss_pred Cc---------------------------------cchheeeecccccCCchhhhhcccCCceeeecccccccCccccch
Q 010028 302 PY---------------------------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 348 (520)
Q Consensus 302 ~~---------------------------------~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (520)
.+ ...++.+||+|.......+.+ .++-.++.+....+.......
T Consensus 323 ~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~--iY~l~v~~IPt~kp~~r~d~~- 399 (762)
T TIGR03714 323 KLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE--TYSLSVVKIPTNKPIIRIDYP- 399 (762)
T ss_pred CcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH--HhCCCEEEcCCCCCeeeeeCC-
Confidence 00 012366677775443344433 223333333333322211111
Q ss_pred hhhhccCCCcHHHHHHHHHh--cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCce
Q 010028 349 YKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426 (520)
Q Consensus 349 ~~~~~~~~~k~~~l~~~~~~--~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (520)
..+......|...+...+.+ ..+.++||||+|.+.++.+...|...+ +.+..+||.+...++..+...++.| .
T Consensus 400 d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~ 474 (762)
T TIGR03714 400 DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--A 474 (762)
T ss_pred CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--e
Confidence 12334455677788887765 367789999999999999999999876 8889999999988887777666555 7
Q ss_pred EEEEecccccCCCCC---------CCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchH-------HHHHHHH
Q 010028 427 VLVSSDAMTRGMDVE---------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLL 490 (520)
Q Consensus 427 vLv~T~~~~~Gidl~---------~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~-------~~~~~~~ 490 (520)
|+|||++++||+|++ ++.+|+++++|..... .||+||+||.|.+|.++.|++.+|. +.+.+++
T Consensus 475 VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~~~~~~~~~ 553 (762)
T TIGR03714 475 VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYY 553 (762)
T ss_pred EEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhhhhcchHHHHHHH
Confidence 999999999999999 8999999999987666 9999999999999999999987653 3445555
Q ss_pred HHh
Q 010028 491 QKA 493 (520)
Q Consensus 491 ~~~ 493 (520)
..+
T Consensus 554 ~~~ 556 (762)
T TIGR03714 554 KKY 556 (762)
T ss_pred HHc
Confidence 544
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.98 E-value=5.7e-31 Score=281.51 Aligned_cols=340 Identities=21% Similarity=0.299 Sum_probs=256.4
Q ss_pred HHHHH-HHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 39 LKVAL-QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 39 ~~~~l-~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
....+ ..||...+++.|.+||..++. |++++|.+|||.||+++|.+|++- -++-+|||.|-.+|..+|
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHHH
Confidence 33444 458999999999999987665 999999999999999999999873 233799999999998875
Q ss_pred HhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccc
Q 010028 118 NSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 197 (520)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 197 (520)
... + ...++...++.++....++...+..
T Consensus 321 v~~------------------------------------------L-~~~~I~a~~L~s~q~~~~~~~i~q~-------- 349 (941)
T KOG0351|consen 321 VTH------------------------------------------L-SKKGIPACFLSSIQTAAERLAILQK-------- 349 (941)
T ss_pred HHh------------------------------------------h-hhcCcceeeccccccHHHHHHHHHH--------
Confidence 333 2 2337888888888887666544322
Q ss_pred cCCchhHHHhhcc--CCcEEEeCchHHHHHHhcC-CCccccc---ccEEEeehHHHHHHHHh--hhhHHHHHHhhccCcc
Q 010028 198 CYDPEDVLQELQS--AVDILVATPGRLMDHINAT-RGFTLEH---LCYLVVDETDRLLREAY--QAWLPTVLQLTRSDNE 269 (520)
Q Consensus 198 ~~~~~~~~~~~~~--~~~Ili~Tp~~l~~~l~~~-~~~~~~~---~~~lViDEah~l~~~~~--~~~l~~i~~~~~~~~~ 269 (520)
.... ..+|++.||+++...-.-. ....+.. +.++||||||++..++. ...-+.+.....
T Consensus 350 ---------l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~---- 416 (941)
T KOG0351|consen 350 ---------LANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRI---- 416 (941)
T ss_pred ---------HhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHh----
Confidence 1222 5789999999874422111 1122333 78999999999876542 121111111111
Q ss_pred cccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchh--hhhcccCCceeeecccccccCccccc
Q 010028 270 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLE 347 (520)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (520)
.++.++++.+|||.+..+.. +....+.++.++.....+.++...+
T Consensus 417 --------------------------------~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV- 463 (941)
T KOG0351|consen 417 --------------------------------RFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEV- 463 (941)
T ss_pred --------------------------------hCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEE-
Confidence 11346789999998765554 4456777888776666554442221
Q ss_pred hhhhhccC--CCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCc
Q 010028 348 SYKLICES--KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425 (520)
Q Consensus 348 ~~~~~~~~--~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~ 425 (520)
.... ......+...-..+....+||||.++.+|+.+...|+..+ +....||++|++++|+.+-+.|-.++.
T Consensus 464 ----~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~ 536 (941)
T KOG0351|consen 464 ----SPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLG---KSAAFYHAGLPPKERETVQKAWMSDKI 536 (941)
T ss_pred ----EeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCC
Confidence 1111 2222333333344578899999999999999999999876 889999999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHh
Q 010028 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 493 (520)
Q Consensus 426 ~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~ 493 (520)
+|+++|=++.+|||.|+|.+||+|++|.|.+.|.|-+||+||.|....|++|+...|...++.++..-
T Consensus 537 ~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 537 RVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred eEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988755
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=4.9e-30 Score=258.81 Aligned_cols=350 Identities=19% Similarity=0.226 Sum_probs=250.2
Q ss_pred HHHHHHHCCCCCcchhhHHHHHhhhCCCCCCC--CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 39 ~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~--~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
+.+.+....| .||..|.+++.+|...+.+.. +-+++|..|||||.+++++++..+.. |.++..++||.-||+|
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----G~Q~ALMAPTEILA~Q 326 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----GYQAALMAPTEILAEQ 326 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----CCeeEEeccHHHHHHH
Confidence 3444466777 999999999999998887765 46999999999999999998887653 5689999999999999
Q ss_pred HHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccccc
Q 010028 117 VNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 196 (520)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~ 196 (520)
.|+. +..|....+++|..++|...-..+...+.
T Consensus 327 H~~~---------------------------------------~~~~l~~~~i~V~lLtG~~kgk~r~~~l~-------- 359 (677)
T COG1200 327 HYES---------------------------------------LRKWLEPLGIRVALLTGSLKGKARKEILE-------- 359 (677)
T ss_pred HHHH---------------------------------------HHHHhhhcCCeEEEeecccchhHHHHHHH--------
Confidence 5554 45555556799999999887666644322
Q ss_pred ccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccccc
Q 010028 197 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 276 (520)
Q Consensus 197 ~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 276 (520)
.......+|+|||+.-+ +. ...++++.++|+||-|++.-.+.. .+.+. ..
T Consensus 360 ---------~l~~G~~~ivVGTHALi----Qd--~V~F~~LgLVIiDEQHRFGV~QR~----~L~~K-G~---------- 409 (677)
T COG1200 360 ---------QLASGEIDIVVGTHALI----QD--KVEFHNLGLVIIDEQHRFGVHQRL----ALREK-GE---------- 409 (677)
T ss_pred ---------HHhCCCCCEEEEcchhh----hc--ceeecceeEEEEeccccccHHHHH----HHHHh-CC----------
Confidence 12334589999996554 32 356889999999999987533211 11111 00
Q ss_pred ccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCC
Q 010028 277 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK 356 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
..+.++.||||+.+..-.+...+.-+-.++ . ..|..-......+-..
T Consensus 410 ---------------------------~~Ph~LvMTATPIPRTLAlt~fgDldvS~I--d----ElP~GRkpI~T~~i~~ 456 (677)
T COG1200 410 ---------------------------QNPHVLVMTATPIPRTLALTAFGDLDVSII--D----ELPPGRKPITTVVIPH 456 (677)
T ss_pred ---------------------------CCCcEEEEeCCCchHHHHHHHhccccchhh--c----cCCCCCCceEEEEecc
Confidence 023479999998776555444322221111 1 1111112222333344
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEecCHH--------HHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCce
Q 010028 357 LKPLYLVALLQSL--GEEKCIVFTSSVE--------STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426 (520)
Q Consensus 357 ~k~~~l~~~~~~~--~~~k~lIf~~s~~--------~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (520)
.+...+++.++.. .+.++-+.||-.+ .+..++..|+.. .++.++..+||.|+++++++++.+|++|+.+
T Consensus 457 ~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 457 ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSF-LPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHH-cccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 5555555555442 7788999999875 455667777744 4567899999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCcEEEEccCCC-CHHHHHHHHhhcccCCCCCcEEEEEecch----HHHHHHHHHHhcCCCCCcc
Q 010028 427 VLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHKDE----VKRFKKLLQKADNDSCPIH 501 (520)
Q Consensus 427 vLv~T~~~~~Gidl~~~~~VI~~~~p~-s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~ 501 (520)
|||||.+++.|||+|+.+++|+.+.-. ..+++-|--||+||-+..+.|++++.+.. .++++-+.+..++ .
T Consensus 536 ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DG-----F 610 (677)
T COG1200 536 ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDG-----F 610 (677)
T ss_pred EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCc-----c
Confidence 999999999999999999999988653 46788899999999999999999998765 4566656554443 5
Q ss_pred cCCchhhh
Q 010028 502 SIPSSLIE 509 (520)
Q Consensus 502 ~~~~~~~~ 509 (520)
.+.+.+++
T Consensus 611 ~IAE~DLk 618 (677)
T COG1200 611 VIAEEDLK 618 (677)
T ss_pred eehhhhHh
Confidence 55555554
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=4.9e-29 Score=258.73 Aligned_cols=355 Identities=19% Similarity=0.185 Sum_probs=227.3
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|. .|++.|.-+...+ .+..+..++||+|||+++.+|++-+... +..+++++||..||.|
T Consensus 53 lg~-~p~~vQlig~~~l------~~G~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~VvTpt~~LA~q--------- 112 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL------HKGKIAEMKTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQR--------- 112 (745)
T ss_pred hCC-CccchHHhhhhhh------cCCceeeecCCCccHHHHHHHHHHHHHh----CCCEEEEcCCHHHHHH---------
Confidence 354 7788886664332 2333889999999999999998644443 3369999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
....+..+....++++++++|+.+...+...
T Consensus 113 ------------------------------dae~~~~l~~~LGLsv~~i~g~~~~~~r~~~------------------- 143 (745)
T TIGR00963 113 ------------------------------DAEWMGQVYRFLGLSVGLILSGMSPEERREA------------------- 143 (745)
T ss_pred ------------------------------HHHHHHHHhccCCCeEEEEeCCCCHHHHHHh-------------------
Confidence 5556667777779999999999876544332
Q ss_pred HhhccCCcEEEeCchHH-HHHHhcCC-----CcccccccEEEeehHHHHHHHH----------------hhhhHHHHHHh
Q 010028 206 QELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLLREA----------------YQAWLPTVLQL 263 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~~lViDEah~l~~~~----------------~~~~l~~i~~~ 263 (520)
..++|++|||..| .+.+..+. ...+..+.++|+||+|.++-.. .......+...
T Consensus 144 ----y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~ 219 (745)
T TIGR00963 144 ----YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKA 219 (745)
T ss_pred ----cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHh
Confidence 2469999999999 88877642 2457889999999999875311 01111112211
Q ss_pred hccCccccccc---cccc--------------ccccccc-----hhhhcc-----------------cc--------ccc
Q 010028 264 TRSDNENRFSD---ASTF--------------LPSAFGS-----LKTIRR-----------------CG--------VER 296 (520)
Q Consensus 264 ~~~~~~~~~~~---~~~~--------------~~~~~~~-----~~~~~~-----------------~~--------~~~ 296 (520)
+.... ....+ .... ....+.. ...+.. .+ -.+
T Consensus 220 L~~~~-dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR 298 (745)
T TIGR00963 220 LEKEV-HYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGR 298 (745)
T ss_pred hccCC-CeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCc
Confidence 11100 00000 0000 0000000 000000 00 000
Q ss_pred CCCCCCc---------------------------------cchheeeecccccCCchhhhhcccCCceeeecccccccCc
Q 010028 297 GFKDKPY---------------------------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 343 (520)
Q Consensus 297 ~~~~~~~---------------------------------~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 343 (520)
....+.+ ...++.+||+|.......+...+.. .++.+....+...
T Consensus 299 ~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l--~vv~IPtnkp~~R 376 (745)
T TIGR00963 299 IMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL--EVVVVPTNRPVIR 376 (745)
T ss_pred CCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC--CEEEeCCCCCeee
Confidence 0000000 0012556666654333333332222 2222222221111
Q ss_pred cccchhhhhccCCCcHHHHHHHHHh--cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHH
Q 010028 344 ERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421 (520)
Q Consensus 344 ~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~ 421 (520)
..... .+......|...+...+.. ..+.++||||+|...++.+++.|...+ +....+|+. ..+|+..+..|+
T Consensus 377 ~d~~d-~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~a 450 (745)
T TIGR00963 377 KDLSD-LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG---IPHNVLNAK--NHEREAEIIAQA 450 (745)
T ss_pred eeCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhc
Confidence 11111 1222334566666665533 367789999999999999999999876 788899998 678999999999
Q ss_pred cCCceEEEEecccccCCCCCC-------CcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 422 EGKIQVLVSSDAMTRGMDVEG-------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 422 ~g~~~vLv~T~~~~~Gidl~~-------~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
.+...|+|||++++||+|++. ..+||+++.|.|...|.|++||+||.|.+|.+..|++.+|
T Consensus 451 g~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 451 GRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred CCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 999999999999999999997 5599999999999999999999999999999999998865
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=6.4e-30 Score=240.84 Aligned_cols=344 Identities=19% Similarity=0.242 Sum_probs=235.5
Q ss_pred HHHHHHHH-CCCCC-cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHH
Q 010028 38 RLKVALQN-MGISS-LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (520)
Q Consensus 38 ~~~~~l~~-~~~~~-~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~ 115 (520)
...++|.+ ||+.. -++.|++|+.++.. ..+|+.|++|||+||+++|.+|.+- .+.-+||+.|-.+|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~-------~~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALV-------HGGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHH-------hCCeEEEehHHHHHHH
Confidence 34566665 66643 57899999999887 4689999999999999999999874 2337899999999999
Q ss_pred hHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccc
Q 010028 116 QVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 195 (520)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 195 (520)
++.+.+.++ .+++..+.+..+..++.+.+..
T Consensus 76 DQiDHL~~L-------------------------------------------KVp~~SLNSKlSt~ER~ri~~D------ 106 (641)
T KOG0352|consen 76 DQIDHLKRL-------------------------------------------KVPCESLNSKLSTVERSRIMGD------ 106 (641)
T ss_pred HHHHHHHhc-------------------------------------------CCchhHhcchhhHHHHHHHHHH------
Confidence 987776554 2333333333333333222110
Q ss_pred cccCCchhHHHhhccCCcEEEeCchHHHH-----HHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccc
Q 010028 196 GICYDPEDVLQELQSAVDILVATPGRLMD-----HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 270 (520)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~-----~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~ 270 (520)
.........+++.||++... +|+. ..+=..+.++|+||||++..++.- .
T Consensus 107 ---------L~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEAHCVSQWGHD-F-------------- 160 (641)
T KOG0352|consen 107 ---------LAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEAHCVSQWGHD-F-------------- 160 (641)
T ss_pred ---------HHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechhhhHhhhccc-c--------------
Confidence 01122345799999986533 2222 112244789999999998765421 0
Q ss_pred ccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchh--hhhcccCCceeeecccc-cccCccccc
Q 010028 271 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGET-RYKLPERLE 347 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~l~~~~~~~~~~~-~~~~~~~~~ 347 (520)
.|.+ ..+..+++ ..+.++.+.++||.+..+.. ..+..+.+|+-+...+. ..++--.+
T Consensus 161 --------RPDY-L~LG~LRS----------~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~- 220 (641)
T KOG0352|consen 161 --------RPDY-LTLGSLRS----------VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN- 220 (641)
T ss_pred --------Ccch-hhhhhHHh----------hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH-
Confidence 0000 00111111 12455679999998876655 45567777765433221 11110000
Q ss_pred hhhhhccCCCcHHHHHHHH----------Hhc---CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHH
Q 010028 348 SYKLICESKLKPLYLVALL----------QSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 414 (520)
Q Consensus 348 ~~~~~~~~~~k~~~l~~~~----------~~~---~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~ 414 (520)
++..... ..+-.|.... .+. ..+..||||.+++.|+.++-.|...| +....+|.++...||-
T Consensus 221 ~~K~~I~--D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERT 295 (641)
T KOG0352|consen 221 HMKSFIT--DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAG---IPAMAYHAGLKKKERT 295 (641)
T ss_pred HHHHHhh--hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcC---cchHHHhcccccchhH
Confidence 0100000 0111111111 111 24678999999999999999998776 7888999999999999
Q ss_pred HHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHH
Q 010028 415 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491 (520)
Q Consensus 415 ~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~ 491 (520)
++-+++-+++..||++|.++.+|+|-|++++||+-++|.|..-|.|-.||+||.|+...|-+++..+|...++-++.
T Consensus 296 eVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 296 EVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred HHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887766654
No 79
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.4e-28 Score=264.26 Aligned_cols=339 Identities=19% Similarity=0.193 Sum_probs=206.3
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
...|+|+|..+.+. . ....-++|.||||+|||.+++..+. .+... ....+++|..||+++++|+++++++.
T Consensus 284 ~~~p~p~Q~~~~~~-~---~~pgl~ileApTGsGKTEAAL~~A~-~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~--- 354 (878)
T PRK09694 284 GYQPRQLQTLVDAL-P---LQPGLTIIEAPTGSGKTEAALAYAW-RLIDQ-GLADSIIFALPTQATANAMLSRLEAL--- 354 (878)
T ss_pred CCCChHHHHHHHhh-c---cCCCeEEEEeCCCCCHHHHHHHHHH-HHHHh-CCCCeEEEECcHHHHHHHHHHHHHHH---
Confidence 34899999876432 1 1346689999999999999877554 34332 23457999999999999988774432
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccc---cCCchhH
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI---CYDPEDV 204 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 204 (520)
+..... ...+.+.+|..........+.......... ...+.+.
T Consensus 355 --------------------------------~~~~f~--~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w 400 (878)
T PRK09694 355 --------------------------------ASKLFP--SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEW 400 (878)
T ss_pred --------------------------------HHHhcC--CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHH
Confidence 222221 235677777665433322211110000000 0000000
Q ss_pred HH---hhccCCcEEEeCchHHHHHHhcCCCcccccc----cEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccc
Q 010028 205 LQ---ELQSAVDILVATPGRLMDHINATRGFTLEHL----CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 277 (520)
Q Consensus 205 ~~---~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~----~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 277 (520)
.. ...--.+|+|||.++++......+...+..+ ++|||||+|.+ +..+...+..+++.+..
T Consensus 401 ~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~----------- 468 (878)
T PRK09694 401 LSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ----------- 468 (878)
T ss_pred HhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHh-----------
Confidence 00 0011268999999999866655443333333 48999999986 44445556666665433
Q ss_pred cccccccchhhhcccccccCCCCCCccchheeeecccccCCchh-hhhcccC---------Cceeeeccc---ccccCcc
Q 010028 278 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LAQLDLH---------HPLFLTTGE---TRYKLPE 344 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~-~~~~~l~---------~~~~~~~~~---~~~~~~~ 344 (520)
...++|++|||++..... +...+.. .|.+..... .......
T Consensus 469 --------------------------~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 469 --------------------------AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred --------------------------cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 233689999999865443 2221111 111110000 0000000
Q ss_pred c----cchhhhhc-----cC-CCcHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHH
Q 010028 345 R----LESYKLIC-----ES-KLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 413 (520)
Q Consensus 345 ~----~~~~~~~~-----~~-~~k~~~l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r 413 (520)
. .....+.. .. ......+..+++. ..+++++|||||++.|+.+++.|++.......+..+|+++...+|
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR 602 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDR 602 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Confidence 0 00000000 11 1112333334443 357789999999999999999999754334679999999999888
Q ss_pred ----HHHHHHH-HcCC---ceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCC
Q 010028 414 ----SKTLKAF-REGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 470 (520)
Q Consensus 414 ----~~~~~~f-~~g~---~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~ 470 (520)
+++++.| ++|+ ..|||+|++++.|+|++ ++++|....| .+.++||+||++|.++
T Consensus 603 ~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 603 REKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 4577888 5565 47999999999999996 7999988777 7899999999999875
No 80
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=263.76 Aligned_cols=367 Identities=21% Similarity=0.277 Sum_probs=260.7
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc-------ccccEEEEcCCHHHHHhHHh
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRALVVLPTRDLALQVNS 119 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~-------~~~~vlil~Pt~~La~q~~~ 119 (520)
|...++..|....+.++. ...++++|||||+|||.++++.+++.+..+.. ...++++++|.++|++.
T Consensus 306 g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE--- 379 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQE--- 379 (1674)
T ss_pred cchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHH---
Confidence 456799999998877665 45899999999999999999999999865432 23479999999999999
Q ss_pred hhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccC
Q 010028 120 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 199 (520)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 199 (520)
+-+.+.+.....++.|.-.+|+.....+.
T Consensus 380 ------------------------------------~VgsfSkRla~~GI~V~ElTgD~~l~~~q--------------- 408 (1674)
T KOG0951|consen 380 ------------------------------------MVGSFSKRLAPLGITVLELTGDSQLGKEQ--------------- 408 (1674)
T ss_pred ------------------------------------HHHHHHhhccccCcEEEEecccccchhhh---------------
Confidence 55666677777899999999987644332
Q ss_pred CchhHHHhhccCCcEEEeCchHHHHHHhcCCC-cc-cccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccc
Q 010028 200 DPEDVLQELQSAVDILVATPGRLMDHINATRG-FT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 277 (520)
Q Consensus 200 ~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~-~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 277 (520)
-.+.+|++|||+.. +.+.++.. .. .+-++++|+||.|.+ ....+..++.+..+......
T Consensus 409 ---------ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL-hDdRGpvLESIVaRt~r~se-------- 469 (1674)
T KOG0951|consen 409 ---------IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL-HDDRGPVLESIVARTFRRSE-------- 469 (1674)
T ss_pred ---------hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc-ccccchHHHHHHHHHHHHhh--------
Confidence 13668999999995 44544322 22 345789999999975 34567778777776554221
Q ss_pred cccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCC
Q 010028 278 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL 357 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (520)
......+.+++|||++...+.-.......+..+.....-. |..+.+.+.-.....
T Consensus 470 -----------------------s~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 470 -----------------------STEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKK 524 (1674)
T ss_pred -----------------------hcccCceeeeecccCCchhhhHHHhccCcccccccCcccC--cCCccceEeccccCC
Confidence 1113567899999997554443322222222222222211 222222222222221
Q ss_pred ---cH-----HHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhc-------------C---------------------
Q 010028 358 ---KP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-------------G--------------------- 395 (520)
Q Consensus 358 ---k~-----~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~-------------~--------------------- 395 (520)
+. .+..+++.....+++|||+.|++++.+.|+.++.. +
T Consensus 525 ~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 525 PLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 11 12233444456689999999999988888887730 0
Q ss_pred CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE----cc------CCCCHHHHHHHHhhc
Q 010028 396 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGRT 465 (520)
Q Consensus 396 ~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~----~~------~p~s~~~~~Q~~GR~ 465 (520)
-..+++.+.|++|+..+|..+.+.|+.|+++|+++|-.+++|+|+|.-+++|- |+ .+.++.+.+||.||+
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 02367899999999999999999999999999999999999999997666652 33 335688999999999
Q ss_pred ccCCC--CCcEEEEEecchHHHHHHHHHHhcCCCCCc-ccCCchhhhhhhhccccC
Q 010028 466 ARAGQ--LGRCFTLLHKDEVKRFKKLLQKADNDSCPI-HSIPSSLIESLRPVYKSG 518 (520)
Q Consensus 466 ~R~~~--~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 518 (520)
||.+- -|..+++...+++..+.++++ +.+|+ .++-+.+.+.++++..+|
T Consensus 685 grp~~D~~gegiiit~~se~qyyls~mn----~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLSLMN----QQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHHhhh----hcCCChHHHHHHhhhhhhhhhhcc
Confidence 99874 477888888899999888774 44444 567778888888888887
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.3e-28 Score=259.84 Aligned_cols=328 Identities=17% Similarity=0.180 Sum_probs=252.7
Q ss_pred CCHHHHHHHH-HCCCCCcchhhHHHHHhhhCCCCCCC--CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 35 LDPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 35 l~~~~~~~l~-~~~~~~~~~~Q~~ai~~~~~~~~~~~--~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
.+......+. .|+| .-|+.|..||+++...|.+++ |-+|||..|.|||.+++=+++..++. |.+|.+|+||.
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~----GKQVAvLVPTT 653 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD----GKQVAVLVPTT 653 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC----CCeEEEEcccH
Confidence 3555555554 4777 899999999999999998887 56999999999999998888887775 45899999999
Q ss_pred HHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcc
Q 010028 112 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191 (520)
Q Consensus 112 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 191 (520)
-||+|.|+.+ ...-....++|..+..=.+..++...+.
T Consensus 654 lLA~QHy~tF---------------------------------------keRF~~fPV~I~~LSRF~s~kE~~~il~--- 691 (1139)
T COG1197 654 LLAQQHYETF---------------------------------------KERFAGFPVRIEVLSRFRSAKEQKEILK--- 691 (1139)
T ss_pred HhHHHHHHHH---------------------------------------HHHhcCCCeeEEEecccCCHHHHHHHHH---
Confidence 9999976652 2222334788888776666555544332
Q ss_pred cccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccc
Q 010028 192 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 271 (520)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~ 271 (520)
.......||+||| +.++. +...+++++++||||-|++. ....+.++.+-.
T Consensus 692 --------------~la~G~vDIvIGT----HrLL~--kdv~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr~--------- 741 (1139)
T COG1197 692 --------------GLAEGKVDIVIGT----HRLLS--KDVKFKDLGLLIIDEEQRFG-VKHKEKLKELRA--------- 741 (1139)
T ss_pred --------------HHhcCCccEEEec----hHhhC--CCcEEecCCeEEEechhhcC-ccHHHHHHHHhc---------
Confidence 1233568999999 45555 35779999999999999963 333455554443
Q ss_pred cccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhh
Q 010028 272 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 351 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 351 (520)
.+-++-+|||+-+..-.+.-.++++-.++.+.+..... + ..
T Consensus 742 ---------------------------------~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p---V---~T 782 (1139)
T COG1197 742 ---------------------------------NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP---V---KT 782 (1139)
T ss_pred ---------------------------------cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc---e---EE
Confidence 33468899999998888888888887776665543111 1 11
Q ss_pred hccCCCcHHHHHHH-HHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEE
Q 010028 352 ICESKLKPLYLVAL-LQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429 (520)
Q Consensus 352 ~~~~~~k~~~l~~~-~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (520)
.+. ......+.+. +++. +++++-..+|.+++.+.+++.|++. -|..++.+.||.|+..+-+.++.+|.+|+++|||
T Consensus 783 ~V~-~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L-VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv 860 (1139)
T COG1197 783 FVS-EYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLREL-VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLV 860 (1139)
T ss_pred EEe-cCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHh-CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEE
Confidence 111 2222344443 3443 7889999999999999999999987 6778999999999999999999999999999999
Q ss_pred EecccccCCCCCCCcEEEEccCCC-CHHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 430 SSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~~~~p~-s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
||.+++.|||+|+++.+|+.+... ..+++.|.-||+||.++.+.|+.++.+
T Consensus 861 ~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 861 CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred EeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 999999999999999998877543 478999999999999999999999886
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=7.6e-29 Score=252.41 Aligned_cols=297 Identities=23% Similarity=0.284 Sum_probs=199.8
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..|+++|++|++++.+....++..++++|||+|||.+++.. +..+ ..++|||+|+++|+.||++.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~-~~~~------~~~~Lvlv~~~~L~~Qw~~~-------- 99 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEA-IAEL------KRSTLVLVPTKELLDQWAEA-------- 99 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHH-HHHh------cCCEEEEECcHHHHHHHHHH--------
Confidence 47999999999998886655788999999999999987553 3322 22499999999999995433
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
+....... ..++.+.|+..
T Consensus 100 -------------------------------~~~~~~~~-~~~g~~~~~~~----------------------------- 118 (442)
T COG1061 100 -------------------------------LKKFLLLN-DEIGIYGGGEK----------------------------- 118 (442)
T ss_pred -------------------------------HHHhcCCc-cccceecCcee-----------------------------
Confidence 22222211 12333333322
Q ss_pred ccC-CcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchh
Q 010028 209 QSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 287 (520)
Q Consensus 209 ~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
... ..|.|+|.+.+.... ....+....+++||||||||+.+..+......+....
T Consensus 119 ~~~~~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~----------------------- 174 (442)
T COG1061 119 ELEPAKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY----------------------- 174 (442)
T ss_pred ccCCCcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhccc-----------------------
Confidence 011 369999999986642 1112334478999999999987666544333332211
Q ss_pred hhcccccccCCCCCCccchheeeecccccCCchhhhhc--ccCCceeeeccccc------------------ccCcccc-
Q 010028 288 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETR------------------YKLPERL- 346 (520)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--~l~~~~~~~~~~~~------------------~~~~~~~- 346 (520)
.++++|||+.......... .+..|..+...... .......
T Consensus 175 -------------------~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~ 235 (442)
T COG1061 175 -------------------PRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEERE 235 (442)
T ss_pred -------------------ceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHH
Confidence 1588999976322111110 11112222221100 0000000
Q ss_pred -----ch-----------------hhhhccCCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEE
Q 010028 347 -----ES-----------------YKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 403 (520)
Q Consensus 347 -----~~-----------------~~~~~~~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~ 403 (520)
.. .........+...+..++..+ .+.+++|||.+..++..++..+...+ . +..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~~~ 311 (442)
T COG1061 236 YAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-VEA 311 (442)
T ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-eEE
Confidence 00 111111223344455555555 47799999999999999999998754 3 788
Q ss_pred eccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccC
Q 010028 404 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 468 (520)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~ 468 (520)
+.+..+..+|+++++.|+.|.+++|+++.++.+|+|+|+++++|......|...|+||+||+.|.
T Consensus 312 it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 312 ITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999994
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=4.3e-28 Score=261.99 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC--CceEEEEecc
Q 010028 356 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSDA 433 (520)
Q Consensus 356 ~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~ 433 (520)
..|.+.+..+++...+.|+||||++...+..+++.|+.. .++.+..+||+|+..+|.++++.|+++ ...|||||++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 457778888888888899999999999999999999642 248899999999999999999999984 5899999999
Q ss_pred cccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 434 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 434 ~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
.++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++..
T Consensus 556 gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 99999999999999999999999999999999999998887666544
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=6.9e-28 Score=257.12 Aligned_cols=320 Identities=20% Similarity=0.244 Sum_probs=206.7
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.|++.|.++++.+.+.+ .++++++.|+||||||.+|+.++.+.+.. +.++|+++|+++|+.|+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~--------- 209 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLAR--------- 209 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHH---------
Confidence 69999999999987643 35789999999999999998876665542 45899999999999996444
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
+... .+..+..++|+.+..++...+.+ ...
T Consensus 210 ------------------------------l~~~---fg~~v~~~~s~~s~~~r~~~~~~-----------------~~~ 239 (679)
T PRK05580 210 ------------------------------FRAR---FGAPVAVLHSGLSDGERLDEWRK-----------------AKR 239 (679)
T ss_pred ------------------------------HHHH---hCCCEEEEECCCCHHHHHHHHHH-----------------HHc
Confidence 3221 24578888988876655443321 233
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhh---hhHHHHHHhhccCcccccccccccccccccch
Q 010028 210 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ---AWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 286 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (520)
..++|+|||+..+. ..++++++|||||+|.....+.. -..+.+......
T Consensus 240 g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~-------------------- 291 (679)
T PRK05580 240 GEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK-------------------- 291 (679)
T ss_pred CCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh--------------------
Confidence 45799999997752 34678999999999964321110 011222111100
Q ss_pred hhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccc--cccCccc-cchhhhhcc--C-CCcHH
Q 010028 287 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET--RYKLPER-LESYKLICE--S-KLKPL 360 (520)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~-~~~~~~~~~--~-~~k~~ 360 (520)
..+.+++++|||++.........+ .......... ....+.. +........ . ..-..
T Consensus 292 ----------------~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 292 ----------------LENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred ----------------ccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 134578999999753333222211 1111111111 0111110 000000000 0 01112
Q ss_pred HHHHHHHh-c-CCCcEEEEecCHH--------------------------------------------------------
Q 010028 361 YLVALLQS-L-GEEKCIVFTSSVE-------------------------------------------------------- 382 (520)
Q Consensus 361 ~l~~~~~~-~-~~~k~lIf~~s~~-------------------------------------------------------- 382 (520)
.+...+++ . .++++|||+|++.
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 34444443 3 4558899887531
Q ss_pred ----HHHHHHHHHhhcCCCceeEEEeccccC--HHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCC--CC
Q 010028 383 ----STHRLCTLLNHFGELRIKIKEYSGLQR--QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AY 454 (520)
Q Consensus 383 ----~~~~l~~~L~~~~~~~~~v~~~~~~~~--~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p--~s 454 (520)
.++++++.|++. .++.++..+|+++. ..+++++++.|++|+.+|||+|+++++|+|+|++++|+.++.. -+
T Consensus 434 ~~g~G~e~~~e~l~~~-fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 434 PVGPGTERLEEELAEL-FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred EeeccHHHHHHHHHHh-CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 456777777765 34578999999986 4578999999999999999999999999999999998766533 22
Q ss_pred ----------HHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 455 ----------IKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 455 ----------~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
...|.|++||+||.++.|.+++....
T Consensus 513 ~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 513 SPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 25789999999999889999876543
No 85
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=228.50 Aligned_cols=343 Identities=19% Similarity=0.257 Sum_probs=242.2
Q ss_pred CCHHHHHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
++.+..+.|++ |....++|.|..+|+.... +.+.++..|||.||+++|.+|++. ..+-+|+++|-..|
T Consensus 78 ws~e~~~ilk~~f~lekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal~-------adg~alvi~plisl 146 (695)
T KOG0353|consen 78 WSDEAKDILKEQFHLEKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPALC-------ADGFALVICPLISL 146 (695)
T ss_pred CchHHHHHHHHHhhHHhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHHh-------cCCceEeechhHHH
Confidence 77888888875 7888999999999888766 999999999999999999999985 34479999999999
Q ss_pred HHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccc
Q 010028 114 ALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193 (520)
Q Consensus 114 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 193 (520)
++++.-.++. + ++....+...++..+ .....
T Consensus 147 medqil~lkq---------------------------------------l----gi~as~lnansske~-~k~v~----- 177 (695)
T KOG0353|consen 147 MEDQILQLKQ---------------------------------------L----GIDASMLNANSSKEE-AKRVE----- 177 (695)
T ss_pred HHHHHHHHHH---------------------------------------h----CcchhhccCcccHHH-HHHHH-----
Confidence 9885333322 2 333333333333221 11110
Q ss_pred cccccCCchhHHHhhccCCcEEEeCchHHHH------HHhcCCCcccccccEEEeehHHHHHHHHhh--h--hHHHHHHh
Q 010028 194 EAGICYDPEDVLQELQSAVDILVATPGRLMD------HINATRGFTLEHLCYLVVDETDRLLREAYQ--A--WLPTVLQL 263 (520)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~------~l~~~~~~~~~~~~~lViDEah~l~~~~~~--~--~l~~i~~~ 263 (520)
...........+++.||+.+.. .+. +......+.++.+||+|+...++.. . ..-.++++
T Consensus 178 ---------~~i~nkdse~kliyvtpekiaksk~~mnkle--ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr 246 (695)
T KOG0353|consen 178 ---------AAITNKDSEFKLIYVTPEKIAKSKKFMNKLE--KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR 246 (695)
T ss_pred ---------HHHcCCCceeEEEEecHHHHHHHHHHHHHHH--HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH
Confidence 0001122346799999997632 222 2345677889999999987655421 1 11122222
Q ss_pred hccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccC--Cceeeeccccccc
Q 010028 264 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH--HPLFLTTGETRYK 341 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~--~~~~~~~~~~~~~ 341 (520)
.+++.+++.++||.+..+..-.+..+. ....+..+..+++
T Consensus 247 --------------------------------------qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~n 288 (695)
T KOG0353|consen 247 --------------------------------------QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPN 288 (695)
T ss_pred --------------------------------------hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCC
Confidence 235667899999987665554332221 2223333333333
Q ss_pred CccccchhhhhccCCCcHHHHHHHHH-hcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH
Q 010028 342 LPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420 (520)
Q Consensus 342 ~~~~~~~~~~~~~~~~k~~~l~~~~~-~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f 420 (520)
+.-.+.+- ..+.+.-.+.+..+++ .+.+...||||-|+++++.++..|+++| ++...+|..|.+.+|.-+-+.+
T Consensus 289 l~yev~qk--p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g---i~a~~yha~lep~dks~~hq~w 363 (695)
T KOG0353|consen 289 LKYEVRQK--PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG---IHAGAYHANLEPEDKSGAHQGW 363 (695)
T ss_pred ceeEeeeC--CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcC---ccccccccccCccccccccccc
Confidence 32221111 1111222334444443 3577889999999999999999999887 8899999999999999999999
Q ss_pred HcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHH----------------------------------------
Q 010028 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH---------------------------------------- 460 (520)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q---------------------------------------- 460 (520)
-.|++.|+|+|-++.+|||-|++++||+..+|.|...|.|
T Consensus 364 ~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavf 443 (695)
T KOG0353|consen 364 IAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVF 443 (695)
T ss_pred cccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeee
Confidence 9999999999999999999999999999999999999999
Q ss_pred ---HHhhcccCCCCCcEEEEEecchHHHHHHHHH
Q 010028 461 ---RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491 (520)
Q Consensus 461 ---~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~ 491 (520)
-.||+||.+....||+++--.|.-++.+++.
T Consensus 444 sekesgragrd~~~a~cilyy~~~difk~ssmv~ 477 (695)
T KOG0353|consen 444 SEKESGRAGRDDMKADCILYYGFADIFKISSMVQ 477 (695)
T ss_pred cchhccccccCCCcccEEEEechHHHHhHHHHHH
Confidence 5699999999999999998877777666654
No 86
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=6.7e-28 Score=263.84 Aligned_cols=225 Identities=18% Similarity=0.279 Sum_probs=159.9
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHH-HHHHHhhh-hHHHHHHhhccCcccccccccccccccccchh
Q 010028 210 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 287 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
..+.|+++||+.|+..+... ..++.+++|||||||. +++.++.- .+..++..
T Consensus 162 ~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~------------------------ 215 (1294)
T PRK11131 162 DNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR------------------------ 215 (1294)
T ss_pred CCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhc------------------------
Confidence 45789999999999988763 3489999999999994 55544321 12222111
Q ss_pred hhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCC---CcHHHHHH
Q 010028 288 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVA 364 (520)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~ 364 (520)
.+..++|++|||+. ...+...+...|. +.+....+.+ ..++...... .+.+.+..
T Consensus 216 ---------------rpdlKvILmSATid--~e~fs~~F~~apv-I~V~Gr~~pV----ei~y~p~~~~~~~~~~d~l~~ 273 (1294)
T PRK11131 216 ---------------RPDLKVIITSATID--PERFSRHFNNAPI-IEVSGRTYPV----EVRYRPIVEEADDTERDQLQA 273 (1294)
T ss_pred ---------------CCCceEEEeeCCCC--HHHHHHHcCCCCE-EEEcCccccc----eEEEeecccccchhhHHHHHH
Confidence 02458999999985 3455555555554 3333222221 1121111111 11222222
Q ss_pred H---HH---hcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCC
Q 010028 365 L---LQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 438 (520)
Q Consensus 365 ~---~~---~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (520)
+ +. ....+.+|||+++..+++.+++.|+..+.....+..+||+++..+|..+++. .|..+|||||+++++|+
T Consensus 274 ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSI 351 (1294)
T PRK11131 274 IFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSL 351 (1294)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhcc
Confidence 2 22 2356789999999999999999999866445568899999999999999876 47889999999999999
Q ss_pred CCCCCcEEEEccC------------------CCCHHHHHHHHhhcccCCCCCcEEEEEecchHHH
Q 010028 439 DVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485 (520)
Q Consensus 439 dl~~~~~VI~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 485 (520)
|+|++++||+++. |.|..+|.||+||+||. .+|.||.+++++++..
T Consensus 352 TIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 352 TVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred ccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 9999999999862 34668999999999999 5999999999877654
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.2e-26 Score=213.56 Aligned_cols=325 Identities=19% Similarity=0.192 Sum_probs=217.7
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
.++++.|+.+-+.++..+.+.++.+|+|.||+|||.+. ...++..+++ |.++.+.+|..+.+..++.+++..
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~a---- 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQA---- 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHh----
Confidence 37999999998888888878899999999999999985 4455555544 568999999999998866554332
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
..++.+.+++|++....+
T Consensus 168 -------------------------------------F~~~~I~~Lyg~S~~~fr------------------------- 185 (441)
T COG4098 168 -------------------------------------FSNCDIDLLYGDSDSYFR------------------------- 185 (441)
T ss_pred -------------------------------------hccCCeeeEecCCchhcc-------------------------
Confidence 125788899998763333
Q ss_pred ccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhh
Q 010028 209 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 288 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (520)
..++|+|..+++.+-.. ++++||||+|.+.-.. ...+....+....
T Consensus 186 ---~plvVaTtHQLlrFk~a--------FD~liIDEVDAFP~~~-d~~L~~Av~~ark---------------------- 231 (441)
T COG4098 186 ---APLVVATTHQLLRFKQA--------FDLLIIDEVDAFPFSD-DQSLQYAVKKARK---------------------- 231 (441)
T ss_pred ---ccEEEEehHHHHHHHhh--------ccEEEEeccccccccC-CHHHHHHHHHhhc----------------------
Confidence 36888888887665554 6799999999864211 1223322322221
Q ss_pred hcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccC-----CCcHH-HH
Q 010028 289 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-----KLKPL-YL 362 (520)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~k~~-~l 362 (520)
.....|++|||+++..+.-....-..+. .....-...|-.+..+....+- ..|+. .+
T Consensus 232 ---------------~~g~~IylTATp~k~l~r~~~~g~~~~~--klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl 294 (441)
T COG4098 232 ---------------KEGATIYLTATPTKKLERKILKGNLRIL--KLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKL 294 (441)
T ss_pred ---------------ccCceEEEecCChHHHHHHhhhCCeeEe--ecchhhcCCCCCCCceEEeccHHHHhhhccCCHHH
Confidence 1224799999998654443322211111 1111111111112222111111 11222 34
Q ss_pred HHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCC
Q 010028 363 VALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 440 (520)
Q Consensus 363 ~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl 440 (520)
...++.. .+..++||+++.+..+.++..|+.. .+...+...|+.. ..|.+.++.|++|+.++||+|.++++|+.+
T Consensus 295 ~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~-~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTf 371 (441)
T COG4098 295 KRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKK-LPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTF 371 (441)
T ss_pred HHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhh-CCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhccccc
Confidence 5555543 5578999999999999999999553 3345667888764 558899999999999999999999999999
Q ss_pred CCCcEEEEccCC--CCHHHHHHHHhhcccCCC--CCcEEEEEec--chHHHHHHHHHHhcCCC
Q 010028 441 EGVNNVVNYDKP--AYIKTYIHRAGRTARAGQ--LGRCFTLLHK--DEVKRFKKLLQKADNDS 497 (520)
Q Consensus 441 ~~~~~VI~~~~p--~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~--~~~~~~~~~~~~~~~~~ 497 (520)
|++++.|.-.-. .+.+.++|.+||+||.-. +|.+..|-.. ..+...++-+++|++.+
T Consensus 372 p~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~MN~lg 434 (441)
T COG4098 372 PNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKEMNKLG 434 (441)
T ss_pred ccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHHHHHHHHHh
Confidence 999997754432 567899999999999763 5666555443 34555566667776544
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=4.9e-27 Score=241.93 Aligned_cols=295 Identities=19% Similarity=0.189 Sum_probs=184.8
Q ss_pred EEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhcc
Q 010028 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFIS 152 (520)
Q Consensus 73 li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (520)
+++||||||||.+|+..+...+ . .+.++||++|+++|+.|+++.+++
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~---~g~~vLvlvP~i~L~~Q~~~~l~~----------------------------- 47 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A---LGKSVLVLVPEIALTPQMIQRFKY----------------------------- 47 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H---cCCeEEEEeCcHHHHHHHHHHHHH-----------------------------
Confidence 4789999999999866544433 2 245799999999999996554322
Q ss_pred chhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCc
Q 010028 153 LPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 232 (520)
. ++..+..++|+.+..++...+. +.....++|+|||+..+. .
T Consensus 48 ----------~---f~~~v~vlhs~~~~~er~~~~~-----------------~~~~g~~~IVVGTrsalf--------~ 89 (505)
T TIGR00595 48 ----------R---FGSQVAVLHSGLSDSEKLQAWR-----------------KVKNGEILVVIGTRSALF--------L 89 (505)
T ss_pred ----------H---hCCcEEEEECCCCHHHHHHHHH-----------------HHHcCCCCEEECChHHHc--------C
Confidence 1 2356777888877665544432 123346799999987652 2
Q ss_pred ccccccEEEeehHHHHHHHHh---hhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchhee
Q 010028 233 TLEHLCYLVVDETDRLLREAY---QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 309 (520)
Q Consensus 233 ~~~~~~~lViDEah~l~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 309 (520)
.++++++|||||+|.....+. .-..+.+...... ..+.+++
T Consensus 90 p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~------------------------------------~~~~~vi 133 (505)
T TIGR00595 90 PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK------------------------------------KFNCPVV 133 (505)
T ss_pred cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH------------------------------------hcCCCEE
Confidence 467889999999997542211 0011111111100 1345789
Q ss_pred eecccccCCchhhhhcccCCceeeecccc--cccCccccchhhhhccC--CCcHHHHHHHHHh-c-CCCcEEEEecCHHH
Q 010028 310 VLSATLTQDPNKLAQLDLHHPLFLTTGET--RYKLPERLESYKLICES--KLKPLYLVALLQS-L-GEEKCIVFTSSVES 383 (520)
Q Consensus 310 ~~SaT~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~k~~~l~~~~~~-~-~~~k~lIf~~s~~~ 383 (520)
++|||++.+....... +.......... ....+ .+......... ..-...+.+.+++ . .++++|||+|++..
T Consensus 134 l~SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p-~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGy 210 (505)
T TIGR00595 134 LGSATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPP-EVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGY 210 (505)
T ss_pred EEeCCCCHHHHHHHhc--CCeEEeechhhhcCCCCC-eEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcC
Confidence 9999975332222211 11111111110 00111 00000000000 1111234444433 3 45689999877543
Q ss_pred ------------------------------------------------------------HHHHHHHHhhcCCCceeEEE
Q 010028 384 ------------------------------------------------------------THRLCTLLNHFGELRIKIKE 403 (520)
Q Consensus 384 ------------------------------------------------------------~~~l~~~L~~~~~~~~~v~~ 403 (520)
.+++++.|++. .++.++..
T Consensus 211 a~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-fp~~~v~~ 289 (505)
T TIGR00595 211 SKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-FPGARIAR 289 (505)
T ss_pred CCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-CCCCcEEE
Confidence 57788888775 34678999
Q ss_pred eccccCHHHH--HHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccC------CC------CHHHHHHHHhhcccCC
Q 010028 404 YSGLQRQSVR--SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------PA------YIKTYIHRAGRTARAG 469 (520)
Q Consensus 404 ~~~~~~~~~r--~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~------p~------s~~~~~Q~~GR~~R~~ 469 (520)
+|+++....+ +++++.|++|+.+|||+|+++++|+|+|++++|+.++. |. ....|.|++||+||.+
T Consensus 290 ~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 290 IDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE 369 (505)
T ss_pred EecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC
Confidence 9999887665 89999999999999999999999999999999865543 21 1357899999999999
Q ss_pred CCCcEEEEE
Q 010028 470 QLGRCFTLL 478 (520)
Q Consensus 470 ~~g~~i~~~ 478 (520)
+.|.+++..
T Consensus 370 ~~g~viiqt 378 (505)
T TIGR00595 370 DPGQVIIQT 378 (505)
T ss_pred CCCEEEEEe
Confidence 889888554
No 89
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=6.5e-27 Score=258.35 Aligned_cols=325 Identities=19% Similarity=0.195 Sum_probs=194.7
Q ss_pred CCcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
..||+||.+|+..+...+..+ +..++++|||||||.+++. ++.++... .+..++|||+|+.+|+.|+.+.++.+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~--- 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-KRFRRILFLVDRSALGEQAEDAFKDT--- 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-CccCeEEEEecHHHHHHHHHHHHHhc---
Confidence 369999999999887665444 6799999999999998543 55555544 24568999999999999965544332
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
.......+...++....... .
T Consensus 487 ------------------------------------~~~~~~~~~~i~~i~~L~~~-----------------------~ 507 (1123)
T PRK11448 487 ------------------------------------KIEGDQTFASIYDIKGLEDK-----------------------F 507 (1123)
T ss_pred ------------------------------------ccccccchhhhhchhhhhhh-----------------------c
Confidence 11111011001110000000 0
Q ss_pred hccCCcEEEeCchHHHHHHhcC----CCcccccccEEEeehHHHHHH--H-------------HhhhhHHHHHHhhccCc
Q 010028 208 LQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVVDETDRLLR--E-------------AYQAWLPTVLQLTRSDN 268 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~----~~~~~~~~~~lViDEah~l~~--~-------------~~~~~l~~i~~~~~~~~ 268 (520)
......|+|+|.+.|...+... ....+..+++||+||||+-.. . .+....+.++....
T Consensus 508 ~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--- 584 (1123)
T PRK11448 508 PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--- 584 (1123)
T ss_pred ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC---
Confidence 1124589999999997765321 114567889999999998421 0 01223334443221
Q ss_pred ccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhh--------------hcccC---Cce
Q 010028 269 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA--------------QLDLH---HPL 331 (520)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~--------------~~~l~---~~~ 331 (520)
...|++|||+......+. ..++. .|.
T Consensus 585 -------------------------------------A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~ 627 (1123)
T PRK11448 585 -------------------------------------AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPI 627 (1123)
T ss_pred -------------------------------------ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCE
Confidence 135888888753221111 01111 122
Q ss_pred eeecccccc--cC--ccccchh---h-hh----ccC---------------CCcHHH----HHHHHHhcCCCcEEEEecC
Q 010028 332 FLTTGETRY--KL--PERLESY---K-LI----CES---------------KLKPLY----LVALLQSLGEEKCIVFTSS 380 (520)
Q Consensus 332 ~~~~~~~~~--~~--~~~~~~~---~-~~----~~~---------------~~k~~~----l~~~~~~~~~~k~lIf~~s 380 (520)
.+....... .. ...+..+ . .. .+. ...... +...+....++|+||||.+
T Consensus 628 ~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s 707 (1123)
T PRK11448 628 RIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAAT 707 (1123)
T ss_pred EEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 221110000 00 0000000 0 00 000 000111 1111222244799999999
Q ss_pred HHHHHHHHHHHhhcC------CCceeEEEeccccCHHHHHHHHHHHHcCCc-eEEEEecccccCCCCCCCcEEEEccCCC
Q 010028 381 VESTHRLCTLLNHFG------ELRIKIKEYSGLQRQSVRSKTLKAFREGKI-QVLVSSDAMTRGMDVEGVNNVVNYDKPA 453 (520)
Q Consensus 381 ~~~~~~l~~~L~~~~------~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidl~~~~~VI~~~~p~ 453 (520)
+.+|+.+++.|.+.. ..+..+..++|+++ ++.+++++|++++. .|+|+++++.+|+|+|.+++||++.++.
T Consensus 708 ~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk 785 (1123)
T PRK11448 708 DAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR 785 (1123)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCC
Confidence 999999999887631 11234566888875 46789999999876 6999999999999999999999999999
Q ss_pred CHHHHHHHHhhcccCCC--CCcEEEEEe
Q 010028 454 YIKTYIHRAGRTARAGQ--LGRCFTLLH 479 (520)
Q Consensus 454 s~~~~~Q~~GR~~R~~~--~g~~i~~~~ 479 (520)
|...|.||+||+.|... ....+.+++
T Consensus 786 S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 786 SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 99999999999999864 233444444
No 90
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=1e-26 Score=255.57 Aligned_cols=227 Identities=15% Similarity=0.253 Sum_probs=159.8
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHH-HHHHHhh-hhHHHHHHhhccCcccccccccccccccccchh
Q 010028 210 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 287 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
..+.|.++|++.|...+... ..+..+++|||||||. .++..+. ..+..++...
T Consensus 155 ~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r----------------------- 209 (1283)
T TIGR01967 155 SNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR----------------------- 209 (1283)
T ss_pred CCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-----------------------
Confidence 35689999999999888763 3478999999999994 5554432 1233333221
Q ss_pred hhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccC----CCcHHHHH
Q 010028 288 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES----KLKPLYLV 363 (520)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~k~~~l~ 363 (520)
+..++|++|||+. ...+...+...|.+. +....+.+. +......... ..+.+.+.
T Consensus 210 ----------------pdLKlIlmSATld--~~~fa~~F~~apvI~-V~Gr~~PVe--v~Y~~~~~~~~~~~~~~~~~i~ 268 (1283)
T TIGR01967 210 ----------------PDLKIIITSATID--PERFSRHFNNAPIIE-VSGRTYPVE--VRYRPLVEEQEDDDLDQLEAIL 268 (1283)
T ss_pred ----------------CCCeEEEEeCCcC--HHHHHHHhcCCCEEE-ECCCcccce--eEEecccccccchhhhHHHHHH
Confidence 2457899999984 355555555555433 322222221 1111010000 11223333
Q ss_pred HHHHh---cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCC
Q 010028 364 ALLQS---LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 440 (520)
Q Consensus 364 ~~~~~---~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl 440 (520)
..+.. ...+.+|||+++..+++.+++.|+..+..+..+..+||+++..++.++++.+ +..+|||||++++.|+|+
T Consensus 269 ~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTI 346 (1283)
T TIGR01967 269 DAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTV 346 (1283)
T ss_pred HHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhcccc
Confidence 33322 2567899999999999999999997654557789999999999999886543 347999999999999999
Q ss_pred CCCcEEEEccCC------------------CCHHHHHHHHhhcccCCCCCcEEEEEecchHHH
Q 010028 441 EGVNNVVNYDKP------------------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485 (520)
Q Consensus 441 ~~~~~VI~~~~p------------------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 485 (520)
|++++||+++.+ .|..+|.||+||+||.+ +|.|+.++++.+...
T Consensus 347 pgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 347 PGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 999999998843 36789999999999998 999999999877654
No 91
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.9e-26 Score=222.65 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=128.3
Q ss_pred chheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHh--cCCCcEEEEecCHH
Q 010028 305 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 382 (520)
Q Consensus 305 ~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~k~lIf~~s~~ 382 (520)
..|+|+.|||+.+.-............+..++.- .-....-+...+.+.|...++. ..+.++||-+-|.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLl--------DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLL--------DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCC--------CCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 3479999999865333333222222222222211 1112333455667766666654 36789999999999
Q ss_pred HHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEcc-----CCCCHHH
Q 010028 383 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD-----KPAYIKT 457 (520)
Q Consensus 383 ~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~-----~p~s~~~ 457 (520)
.|+.+.++|.+.| +++.++|++...-+|-+++++++.|.++|||+.+.+-+|+|+|.|++|.++| +..|..+
T Consensus 458 mAEdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~S 534 (663)
T COG0556 458 MAEDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 534 (663)
T ss_pred HHHHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccch
Confidence 9999999999877 9999999999999999999999999999999999999999999999999887 4568899
Q ss_pred HHHHHhhcccCCCCCcEEEEEec
Q 010028 458 YIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 458 ~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
++|.+||+.|.- .|++|.+.+.
T Consensus 535 LIQtIGRAARN~-~GkvIlYAD~ 556 (663)
T COG0556 535 LIQTIGRAARNV-NGKVILYADK 556 (663)
T ss_pred HHHHHHHHhhcc-CCeEEEEchh
Confidence 999999999975 8999999876
No 92
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.94 E-value=4.6e-25 Score=242.64 Aligned_cols=452 Identities=16% Similarity=0.120 Sum_probs=245.2
Q ss_pred CCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 33 PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 33 ~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
+.+++.+...+...|| .+|+.|.+.++.+...+.+++++++.||||+|||++|++|++..+. .+.+++|.+||++
T Consensus 229 ~~~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----~~~~vvi~t~t~~ 303 (850)
T TIGR01407 229 NTLSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----TEKPVVISTNTKV 303 (850)
T ss_pred ccccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----CCCeEEEEeCcHH
Confidence 3356678888888888 5899999988888877777899999999999999999999987665 2348999999999
Q ss_pred HHHhHHhh----hhcccccccccccchhhhhHHhhh-cccchhccc-hhhHH----HHhhhccccc---ce-EEeccCcc
Q 010028 113 LALQVNSA----RCKYCCKNIFGLIADHSIAEMCVQ-FDSLLFISL-PQVKD----VFAAIAPAVG---LS-VGLAVGQS 178 (520)
Q Consensus 113 La~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~----~~~~~~~~~~---~~-v~~~~g~~ 178 (520)
|+.|++.. +.+.++........+++.+..|.+ |.+.+.... +.... .+-.|..... +. +....++.
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 99998764 333333334444456677777765 444333221 11111 1112222111 00 00111111
Q ss_pred chHHHHHHHhhccccccc-ccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHh----
Q 010028 179 SIADEISELIKRPKLEAG-ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY---- 253 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~---- 253 (520)
....++..-.+. ...+. ...++....+.....++|+|+++..+...+.... ..+...+++||||||++.+...
T Consensus 384 ~~~~~i~~~~~l-~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 384 MFFAQVRHDGNL-SKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred hhHHHhhcCCCC-CCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhc
Confidence 112222111100 01111 2345667777778889999999998877664422 2346678999999999864211
Q ss_pred --------hhhHHHH---------------HHhhccCccccccc----------------------c--cccccccccch
Q 010028 254 --------QAWLPTV---------------LQLTRSDNENRFSD----------------------A--STFLPSAFGSL 286 (520)
Q Consensus 254 --------~~~l~~i---------------~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~ 286 (520)
...+..+ ++.........+.. . ...........
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 1111111 00000000000000 0 00000000000
Q ss_pred hh----------h----cccccccC---------CCC-----------CC-ccchheeeecccccCC--chhhhh-cccC
Q 010028 287 KT----------I----RRCGVERG---------FKD-----------KP-YPRLVKMVLSATLTQD--PNKLAQ-LDLH 328 (520)
Q Consensus 287 ~~----------~----~~~~~~~~---------~~~-----------~~-~~~~~~i~~SaT~~~~--~~~~~~-~~l~ 328 (520)
.. . ...+.+.. ... .. .....+|++|||+... ...+.+ .++.
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 00000000 000 00 1124588999999742 333332 3333
Q ss_pred CceeeecccccccCccccchhh--hhc-----cCCCcHHHHHHHHH---hcCCCcEEEEecCHHHHHHHHHHHhhcCC-C
Q 010028 329 HPLFLTTGETRYKLPERLESYK--LIC-----ESKLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGE-L 397 (520)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~k~~~l~~~~~---~~~~~k~lIf~~s~~~~~~l~~~L~~~~~-~ 397 (520)
+.......+..+........+. ... +...-.+.+...+. ...++++|||++|.+.++.++..|..... .
T Consensus 622 ~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~ 701 (850)
T TIGR01407 622 DVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFE 701 (850)
T ss_pred ccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 2222211111111111111000 000 00111112222222 23567999999999999999999975221 1
Q ss_pred ceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCc--EEEEccCCCC---------------------
Q 010028 398 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN--NVVNYDKPAY--------------------- 454 (520)
Q Consensus 398 ~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~--~VI~~~~p~s--------------------- 454 (520)
+..+ +..+.. ..|.++++.|++++..||++|+.+++|||+|+.. .||+..+|..
T Consensus 702 ~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~ 778 (850)
T TIGR01407 702 GYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNP 778 (850)
T ss_pred CceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 2232 222222 4688999999999999999999999999999844 5777776621
Q ss_pred ---------HHHHHHHHhhcccCCCCCcEEEEEecc-hHHHH-HHHHHHhc
Q 010028 455 ---------IKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRF-KKLLQKAD 494 (520)
Q Consensus 455 ---------~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~~~~~-~~~~~~~~ 494 (520)
...+.|.+||+.|...+.-+++++++. ..+.| +.+.+.+.
T Consensus 779 f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 779 FYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred hHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 234569999999998765566666664 33344 56665554
No 93
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.94 E-value=1.4e-25 Score=206.74 Aligned_cols=201 Identities=31% Similarity=0.512 Sum_probs=162.4
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-cccc
Q 010028 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCL 102 (520)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-~~~~ 102 (520)
|++++ +++.+.+.+.++|+..|+++|.++++.+.. ++++++.+|||+|||+++++++++.+.... ..++
T Consensus 1 ~~~~~------~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~ 70 (203)
T cd00268 1 FEELG------LSPELLRGIYALGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGP 70 (203)
T ss_pred CCcCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCc
Confidence 45566 899999999999999999999999998876 899999999999999999999999887651 2467
Q ss_pred cEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHH
Q 010028 103 RALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIAD 182 (520)
Q Consensus 103 ~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 182 (520)
+++|++|+++|+.| +...+..+....++.+..++|+.....
T Consensus 71 ~viii~p~~~L~~q---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (203)
T cd00268 71 QALILAPTRELALQ---------------------------------------IAEVARKLGKHTNLKVVVIYGGTSIDK 111 (203)
T ss_pred eEEEEcCCHHHHHH---------------------------------------HHHHHHHHhccCCceEEEEECCCCHHH
Confidence 89999999999999 444455555556788888888877655
Q ss_pred HHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHH
Q 010028 183 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262 (520)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~ 262 (520)
.... ...+++|+|+||+.+...+... ...+.+++++|+||+|.+.+..+...+..++.
T Consensus 112 ~~~~---------------------~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~ 169 (203)
T cd00268 112 QIRK---------------------LKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDMGFEDQIREILK 169 (203)
T ss_pred HHHH---------------------hcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhccChHHHHHHHHH
Confidence 4332 2246799999999999988764 36788999999999999887777777777776
Q ss_pred hhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceee
Q 010028 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~ 333 (520)
.+.. ..+++++|||+++....+....+.+|..+
T Consensus 170 ~l~~--------------------------------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 170 LLPK--------------------------------------DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hCCc--------------------------------------ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 6432 45789999999988877777777777654
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=9.7e-25 Score=229.87 Aligned_cols=352 Identities=17% Similarity=0.209 Sum_probs=224.1
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSL 148 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (520)
..--+..++||+|||+++.+|++.++... ..++|++||+.||.|
T Consensus 95 h~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~q-------------------------------- 138 (896)
T PRK13104 95 HEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKR-------------------------------- 138 (896)
T ss_pred ccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHH--------------------------------
Confidence 34457899999999999999999777643 369999999999999
Q ss_pred hhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHH-HHHHh
Q 010028 149 LFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHIN 227 (520)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~ 227 (520)
...++..+....++.+++++|+.+...+...+ .++|++|||+.| .+.+.
T Consensus 139 -------d~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y-----------------------~~dIvygT~grlgfDyLr 188 (896)
T PRK13104 139 -------DSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY-----------------------KADIVYGTNNEYGFDYLR 188 (896)
T ss_pred -------HHHHHHHHhcccCceEEEEeCCCCHHHHHHHh-----------------------CCCEEEECChhhhHHHHh
Confidence 66667777777899999999998766654332 569999999999 88888
Q ss_pred cCCCccc-----ccccEEEeehHHHHHHH----------------HhhhhHHHHHHhhccCc-----cccccccc---cc
Q 010028 228 ATRGFTL-----EHLCYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN-----ENRFSDAS---TF 278 (520)
Q Consensus 228 ~~~~~~~-----~~~~~lViDEah~l~~~----------------~~~~~l~~i~~~~~~~~-----~~~~~~~~---~~ 278 (520)
.+....+ ..+.++|+||||.++=. .....+..+...+.... .....+.. ..
T Consensus 189 d~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~ 268 (896)
T PRK13104 189 DNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAH 268 (896)
T ss_pred cCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceE
Confidence 7533444 57899999999987421 12223333333332210 00000000 00
Q ss_pred ------------------c---ccccc-----chhhhccccc-----cc--------------------CCCCCCc----
Q 010028 279 ------------------L---PSAFG-----SLKTIRRCGV-----ER--------------------GFKDKPY---- 303 (520)
Q Consensus 279 ------------------~---~~~~~-----~~~~~~~~~~-----~~--------------------~~~~~~~---- 303 (520)
+ ...+. ....+..... .+ ....+.+
T Consensus 269 Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 348 (896)
T PRK13104 269 LTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGL 348 (896)
T ss_pred EchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHH
Confidence 0 00000 0000000000 00 0000000
Q ss_pred -----------------------------cchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhcc
Q 010028 304 -----------------------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 354 (520)
Q Consensus 304 -----------------------------~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
...++-+||+|.......+.+. ++-.++.+....+........ .+...
T Consensus 349 HQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~i--Y~l~Vv~IPtnkp~~R~d~~d-~v~~t 425 (896)
T PRK13104 349 HQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQI--YNLEVVVIPTNRSMIRKDEAD-LVYLT 425 (896)
T ss_pred HHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHH--hCCCEEECCCCCCcceecCCC-eEEcC
Confidence 0011444444443332222222 222222222222111111111 12333
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 355 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
...|...+.+.+... .+.++||||+|++.++.+++.|...+ +....+|+.+...++..+.+.|+.|. |+|||+
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~g---i~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKEN---IKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCeEeecCCCChHHHHHHHhCCCCCc--EEEecc
Confidence 455666666665442 67789999999999999999999876 88999999999999999999999994 999999
Q ss_pred ccccCCCCC--------------------------------------CCcEEEEccCCCCHHHHHHHHhhcccCCCCCcE
Q 010028 433 AMTRGMDVE--------------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 474 (520)
Q Consensus 433 ~~~~Gidl~--------------------------------------~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~ 474 (520)
+.+||+|+. +-=+||-...+.|..--.|..||+||.|.+|.+
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 999999987 223577778888999999999999999999998
Q ss_pred EEEEecch-H------HHHHHHHHHhc
Q 010028 475 FTLLHKDE-V------KRFKKLLQKAD 494 (520)
Q Consensus 475 i~~~~~~~-~------~~~~~~~~~~~ 494 (520)
-.|++=+| + +.+.++++.+.
T Consensus 581 ~f~lSleD~l~~~f~~~~~~~~~~~~~ 607 (896)
T PRK13104 581 RFYLSLEDNLMRIFASERVASMMRRLG 607 (896)
T ss_pred EEEEEcCcHHHHHhChHHHHHHHHHcC
Confidence 88877543 3 33455555443
No 95
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=8.4e-25 Score=225.90 Aligned_cols=352 Identities=22% Similarity=0.262 Sum_probs=241.9
Q ss_pred CCHHHHHHH-HHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 35 l~~~~~~~l-~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
+.+...+.. ...|+..++.||.+|+. .++.+++++.+..+||+.|||+++-+-+++.+.-. ...++++.|..+.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeeh
Confidence 344444443 44688899999999985 56677789999999999999999888888877643 3468999999887
Q ss_pred HHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccc
Q 010028 114 ALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193 (520)
Q Consensus 114 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 193 (520)
+.. -...+..+....|+.+...+|..+.....
T Consensus 282 v~E---------------------------------------k~~~l~~~~~~~G~~ve~y~g~~~p~~~~--------- 313 (1008)
T KOG0950|consen 282 VQE---------------------------------------KISALSPFSIDLGFPVEEYAGRFPPEKRR--------- 313 (1008)
T ss_pred hHH---------------------------------------HHhhhhhhccccCCcchhhcccCCCCCcc---------
Confidence 766 44455666677788888888765533332
Q ss_pred cccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCC-CcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccc
Q 010028 194 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 272 (520)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~ 272 (520)
..-.+.|+|-++-..+....- .-.+..+++|||||.|++.+.+.+..++.++..+-.....
T Consensus 314 ----------------k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~-- 375 (1008)
T KOG0950|consen 314 ----------------KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE-- 375 (1008)
T ss_pred ----------------cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc--
Confidence 234799999887655443210 1225678999999999999999999999988876543221
Q ss_pred ccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhh
Q 010028 273 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (520)
..+|+|++|||++. ...+..+.- ..++........+.+.+......
T Consensus 376 -------------------------------~~~~iIGMSATi~N-~~lL~~~L~--A~~y~t~fRPv~L~E~ik~G~~i 421 (1008)
T KOG0950|consen 376 -------------------------------TSVQIIGMSATIPN-NSLLQDWLD--AFVYTTRFRPVPLKEYIKPGSLI 421 (1008)
T ss_pred -------------------------------cceeEeeeecccCC-hHHHHHHhh--hhheecccCcccchhccCCCccc
Confidence 11578999999964 333222111 11122211111111111111111
Q ss_pred ccCC------------------CcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhc-----------C------
Q 010028 353 CESK------------------LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-----------G------ 395 (520)
Q Consensus 353 ~~~~------------------~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~-----------~------ 395 (520)
.... ...+.+..+..+. ++.++||||++++.|+.++..+... +
T Consensus 422 ~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s 501 (1008)
T KOG0950|consen 422 YESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLS 501 (1008)
T ss_pred ccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHH
Confidence 1110 0112222222221 3456999999999999988765430 0
Q ss_pred ------------------CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEcc----CCC
Q 010028 396 ------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----KPA 453 (520)
Q Consensus 396 ------------------~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~----~p~ 453 (520)
.....+.++|.+++..+|+.+...|++|...|+++|+++..|+++|...+++-.- ...
T Consensus 502 ~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l 581 (1008)
T KOG0950|consen 502 ISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFL 581 (1008)
T ss_pred HHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchh
Confidence 1235688999999999999999999999999999999999999999777666432 234
Q ss_pred CHHHHHHHHhhcccCCC--CCcEEEEEecchHHHHHHHHH
Q 010028 454 YIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVKRFKKLLQ 491 (520)
Q Consensus 454 s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~~~~~~~~~~~ 491 (520)
+..+|.||+||+||.|- .|.+|+++.+.+.+++..++.
T Consensus 582 ~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 582 TRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 56799999999999985 489999999999988887765
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=7.6e-24 Score=223.02 Aligned_cols=355 Identities=17% Similarity=0.155 Sum_probs=227.1
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|. .|++.|.-.--. + ..--+..+.||+|||+++.+|++-..+. +..+.+++||..||.|
T Consensus 78 lg~-~~~dvQlig~l~----L--~~G~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~IvTpn~yLA~r--------- 137 (830)
T PRK12904 78 LGM-RHFDVQLIGGMV----L--HEGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHVVTVNDYLAKR--------- 137 (830)
T ss_pred hCC-CCCccHHHhhHH----h--cCCchhhhhcCCCcHHHHHHHHHHHHHc----CCCEEEEecCHHHHHH---------
Confidence 354 777778544221 1 2234889999999999999998644333 2358899999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
....+..+....+++++++.|+.+...+...+
T Consensus 138 ------------------------------d~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y------------------ 169 (830)
T PRK12904 138 ------------------------------DAEWMGPLYEFLGLSVGVILSGMSPEERREAY------------------ 169 (830)
T ss_pred ------------------------------HHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc------------------
Confidence 55566667777799999999998876664432
Q ss_pred HhhccCCcEEEeCchHH-HHHHhcCCC-----cccccccEEEeehHHHHHHH----------------HhhhhHHHHHHh
Q 010028 206 QELQSAVDILVATPGRL-MDHINATRG-----FTLEHLCYLVVDETDRLLRE----------------AYQAWLPTVLQL 263 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l-~~~l~~~~~-----~~~~~~~~lViDEah~l~~~----------------~~~~~l~~i~~~ 263 (520)
.++|+++||..| .+.+..+.. .....+.++||||||.++=. .....+..+...
T Consensus 170 -----~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~ 244 (830)
T PRK12904 170 -----AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPT 244 (830)
T ss_pred -----CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHh
Confidence 469999999999 888876432 23677899999999987411 122333333333
Q ss_pred hccCccccc--------------------ccccccccc--------ccc-------------------------------
Q 010028 264 TRSDNENRF--------------------SDASTFLPS--------AFG------------------------------- 284 (520)
Q Consensus 264 ~~~~~~~~~--------------------~~~~~~~~~--------~~~------------------------------- 284 (520)
+........ .... .+.. +..
T Consensus 245 l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~-~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR 323 (830)
T PRK12904 245 LEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE-NLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGR 323 (830)
T ss_pred cCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCc-cccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCc
Confidence 321100000 0000 0000 000
Q ss_pred -------------chhhhcccccccCCCC---CCc-----cchheeeecccccCCchhhhhcccCCceeeecccccccCc
Q 010028 285 -------------SLKTIRRCGVERGFKD---KPY-----PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 343 (520)
Q Consensus 285 -------------~~~~~~~~~~~~~~~~---~~~-----~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 343 (520)
.++......+...... ..+ ...++.+||+|.......+...+ +-.++.+....+...
T Consensus 324 ~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY--~l~vv~IPtnkp~~r 401 (830)
T PRK12904 324 LMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY--NLDVVVIPTNRPMIR 401 (830)
T ss_pred cCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh--CCCEEEcCCCCCeee
Confidence 0000000000000000 000 01135666666643333333322 222333333222211
Q ss_pred cccchhhhhccCCCcHHHHHHHHHh--cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHH
Q 010028 344 ERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421 (520)
Q Consensus 344 ~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~ 421 (520)
.... ..+......|...+...+.. ..+.++||||+|+..++.+++.|...+ +....+|+. ..+|+..+..|+
T Consensus 402 ~d~~-d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~A 475 (830)
T PRK12904 402 IDHP-DLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQA 475 (830)
T ss_pred eeCC-CeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CceEeccCc--hHHHHHHHHHhc
Confidence 1111 12233445677788887765 467789999999999999999999876 888999996 678999999999
Q ss_pred cCCceEEEEecccccCCCCCC--------------------------------------CcEEEEccCCCCHHHHHHHHh
Q 010028 422 EGKIQVLVSSDAMTRGMDVEG--------------------------------------VNNVVNYDKPAYIKTYIHRAG 463 (520)
Q Consensus 422 ~g~~~vLv~T~~~~~Gidl~~--------------------------------------~~~VI~~~~p~s~~~~~Q~~G 463 (520)
.+...|+|||++++||+|++- -=+||....|.|..--.|..|
T Consensus 476 g~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrG 555 (830)
T PRK12904 476 GRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRG 555 (830)
T ss_pred CCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhc
Confidence 999999999999999999982 235777888999999999999
Q ss_pred hcccCCCCCcEEEEEecch
Q 010028 464 RTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 464 R~~R~~~~g~~i~~~~~~~ 482 (520)
|+||.|.+|.+-.|++=+|
T Consensus 556 RagRQGdpGss~f~lSleD 574 (830)
T PRK12904 556 RSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred ccccCCCCCceeEEEEcCc
Confidence 9999999999988887643
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=7.6e-24 Score=222.13 Aligned_cols=123 Identities=22% Similarity=0.283 Sum_probs=107.4
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 355 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
...|...+...+... .+.++||||+|+..++.+++.|...+ +....+|+.+...++..+...++.|. |+|||+
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCce--EEEEec
Confidence 345777777777543 77899999999999999999999876 78899999998877777777776665 999999
Q ss_pred ccccCCCCC---CCc-----EEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 433 AMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 433 ~~~~Gidl~---~~~-----~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
+.+||.|++ ++. +||+++.|.|...|.|+.||+||.|.+|.+..|++-+|
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999999995 788 99999999999999999999999999999999988764
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=5.1e-23 Score=223.51 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=103.0
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC---CceEEEE
Q 010028 356 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG---KIQVLVS 430 (520)
Q Consensus 356 ~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~ 430 (520)
..|...+..++... .+.++|||+.....+..+.++|...+ +....++|.++..+|..+++.|++. ..-+|++
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 45666666666654 57799999999999999999998665 7888999999999999999999763 2357899
Q ss_pred ecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 431 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 431 T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
|.+.+.|+|+..+++||+||++|++....|++||+.|.|+...|.+|
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 99999999999999999999999999999999999999987766555
No 99
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=2.2e-23 Score=224.84 Aligned_cols=343 Identities=16% Similarity=0.140 Sum_probs=206.5
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.+++.|..+++.+......+..+++.||||+|||.+.+.+++..+........+++++.|++.+++++++.++++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~- 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF- 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-
Confidence 4589999999987775433337889999999999999888887766522356789999999999999777755532211
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
.......+|..........-. ...... ........
T Consensus 274 --------------------------------------~~~~~~~h~~~~~~~~~~~~~-----~~~~~~--~~~ds~~~ 308 (733)
T COG1203 274 --------------------------------------SVIGKSLHSSSKEPLLLEPDQ-----DILLTL--TTNDSYKK 308 (733)
T ss_pred --------------------------------------ccccccccccccchhhhcccc-----ccceeE--Eecccccc
Confidence 111110122111110000000 000000 00000001
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcc-cc--cccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccch
Q 010028 210 SAVDILVATPGRLMDHINATRGFT-LE--HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 286 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~-~~--~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (520)
....+.++||.............. +. ..+++|+||+|.+........+..++..+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~-------------------- 368 (733)
T COG1203 309 LLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAE-------------------- 368 (733)
T ss_pred eeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHh--------------------
Confidence 123455556555544222211121 11 2379999999988655344445555554443
Q ss_pred hhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccc-cccCccccchhh--hhccCCCcHHHHH
Q 010028 287 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYK--LICESKLKPLYLV 363 (520)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~k~~~l~ 363 (520)
.+.+++++|||++...................... ............ .........+...
T Consensus 369 -----------------~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 369 -----------------AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred -----------------CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhh
Confidence 24578999999998777655544433322222111 000000000000 0000010011111
Q ss_pred HHHH-hcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHH----cCCceEEEEecccccCC
Q 010028 364 ALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMTRGM 438 (520)
Q Consensus 364 ~~~~-~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T~~~~~Gi 438 (520)
.... ...+++++|.|||+..|..+++.|+..+. ++..+|+.+...+|.+.++.+. .++..|+|+|++++.|+
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP---KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 1112 23678999999999999999999998752 7999999999999998887655 46889999999999999
Q ss_pred CCCCCcEEEEccCCCCHHHHHHHHhhcccCC--CCCcEEEEEecc
Q 010028 439 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRCFTLLHKD 481 (520)
Q Consensus 439 dl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~--~~g~~i~~~~~~ 481 (520)
|+. .+.+|---.| .++++||+||++|.| ..|.++++....
T Consensus 509 Did-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 509 DID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred ccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 999 7766543344 899999999999999 567788776653
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.8e-23 Score=220.33 Aligned_cols=322 Identities=18% Similarity=0.191 Sum_probs=221.3
Q ss_pred HHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 42 ~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
....++| .|-++|++|+..+.. +.+++++||||+|||++.-+++...+.. +.++++.+|.++|.+|-|..+
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~~----~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALRD----GQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHHc----CCceEeccchhhhhhhHHHHH
Confidence 3445677 999999999987654 8999999999999999988877766543 447999999999999965542
Q ss_pred hcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCc
Q 010028 122 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 201 (520)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (520)
...++.. .-.+++.+|+..
T Consensus 183 --------------------------------------~~~fgdv-~~~vGL~TGDv~---------------------- 201 (1041)
T COG4581 183 --------------------------------------LAKFGDV-ADMVGLMTGDVS---------------------- 201 (1041)
T ss_pred --------------------------------------HHHhhhh-hhhccceeccee----------------------
Confidence 1222211 233566677644
Q ss_pred hhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccc
Q 010028 202 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 281 (520)
Q Consensus 202 ~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 281 (520)
++.++.++|+|.+.|.+++..+ ...+..+..|||||+|.+.+...+-.-+.++-+++.
T Consensus 202 ------IN~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~--------------- 259 (1041)
T COG4581 202 ------INPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD--------------- 259 (1041)
T ss_pred ------eCCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhcCC---------------
Confidence 5567789999999999999874 467899999999999999888777666777766554
Q ss_pred cccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcc--cCCceeeecccccccCccccc-----hhhhhcc
Q 010028 282 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD--LHHPLFLTTGETRYKLPERLE-----SYKLICE 354 (520)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 354 (520)
.+++|++|||.+...+.-.+.. -..|..+...+.++ .|-... ..+...+
T Consensus 260 -----------------------~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rp-vPL~~~~~~~~~l~~lvd 315 (1041)
T COG4581 260 -----------------------HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRP-VPLEHFVYVGKGLFDLVD 315 (1041)
T ss_pred -----------------------CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCC-CCeEEEEecCCceeeeec
Confidence 4578999999975544432221 23333332222211 000000 0000000
Q ss_pred C-----------------------------------------------CCcHHHHHHHHHhcCCCcEEEEecCHHHHHHH
Q 010028 355 S-----------------------------------------------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 387 (520)
Q Consensus 355 ~-----------------------------------------------~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l 387 (520)
. ..+...++..+.....-.+|+|+=|+..|+..
T Consensus 316 e~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~ 395 (1041)
T COG4581 316 EKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEA 395 (1041)
T ss_pred ccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHH
Confidence 0 00111223333334455799999999999988
Q ss_pred HHHHhhcC----------------------------CC----------ceeEEEeccccCHHHHHHHHHHHHcCCceEEE
Q 010028 388 CTLLNHFG----------------------------EL----------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429 (520)
Q Consensus 388 ~~~L~~~~----------------------------~~----------~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (520)
+..+.... -+ .-.+.+.|+++=+..|..+...|..|-.+|++
T Consensus 396 a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvF 475 (1041)
T COG4581 396 AQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVF 475 (1041)
T ss_pred HHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEe
Confidence 88765310 00 11255789999999999999999999999999
Q ss_pred EecccccCCCCCCCcEEEEcc---------CCCCHHHHHHHHhhcccCCCC--CcEEEEEec
Q 010028 430 SSDAMTRGMDVEGVNNVVNYD---------KPAYIKTYIHRAGRTARAGQL--GRCFTLLHK 480 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~~~---------~p~s~~~~~Q~~GR~~R~~~~--g~~i~~~~~ 480 (520)
+|.+++.|+|+|.-++|+ .. ..-+..+|.|+.||+||.|-+ |.+|+....
T Consensus 476 aTeT~s~GiNmPartvv~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 476 ATETFAIGINMPARTVVF-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ehhhhhhhcCCcccceee-eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 999999999999655444 33 234578999999999999964 767766443
No 101
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=5.2e-23 Score=211.28 Aligned_cols=325 Identities=17% Similarity=0.170 Sum_probs=213.6
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
+.| .|-.+|++||.++.. |.+++|.|+|.+|||+++-+++.-. . ..+-|++|-+|-++|.+|
T Consensus 294 ~pF-elD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAiala-q---~h~TR~iYTSPIKALSNQ--------- 355 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALA-Q---KHMTRTIYTSPIKALSNQ--------- 355 (1248)
T ss_pred CCC-CccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHH-H---hhccceEecchhhhhccc---------
Confidence 455 889999999988765 9999999999999999877654322 1 134579999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
-.+.+..-... +++++|+..
T Consensus 356 ------------------------------KfRDFk~tF~D----vgLlTGDvq-------------------------- 375 (1248)
T KOG0947|consen 356 ------------------------------KFRDFKETFGD----VGLLTGDVQ-------------------------- 375 (1248)
T ss_pred ------------------------------hHHHHHHhccc----cceeeccee--------------------------
Confidence 33333322121 236777644
Q ss_pred HhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccc
Q 010028 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 285 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (520)
++..+..+|+|.+.|.+++.++. --++++..|||||+|.+-+...+-..++++=+++.
T Consensus 376 --inPeAsCLIMTTEILRsMLYrga-dliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~------------------- 433 (1248)
T KOG0947|consen 376 --INPEASCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPR------------------- 433 (1248)
T ss_pred --eCCCcceEeehHHHHHHHHhccc-chhhccceEEEeeeeecccccccccceeeeeeccc-------------------
Confidence 44567899999999999998744 34688999999999998776655545555544433
Q ss_pred hhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccC---CceeeecccccccC--------------------
Q 010028 286 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH---HPLFLTTGETRYKL-------------------- 342 (520)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~---~~~~~~~~~~~~~~-------------------- 342 (520)
.+++|++|||.+...+...+.+-. ...++.+......+
T Consensus 434 -------------------HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~f 494 (1248)
T KOG0947|consen 434 -------------------HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIF 494 (1248)
T ss_pred -------------------cceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchh
Confidence 456899999997654443321111 11111111000000
Q ss_pred -ccccch---------------------------hh-------h--h--ccCCCc-----HHHHHHHHHhcCCCcEEEEe
Q 010028 343 -PERLES---------------------------YK-------L--I--CESKLK-----PLYLVALLQSLGEEKCIVFT 378 (520)
Q Consensus 343 -~~~~~~---------------------------~~-------~--~--~~~~~k-----~~~l~~~~~~~~~~k~lIf~ 378 (520)
...+.. .. . . .....+ ...++..++...-=.+||||
T Consensus 495 l~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFv 574 (1248)
T KOG0947|consen 495 LLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFV 574 (1248)
T ss_pred hhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEE
Confidence 000000 00 0 0 000001 22233333333444799999
Q ss_pred cCHHHHHHHHHHHhhcCC------------------------------------CceeEEEeccccCHHHHHHHHHHHHc
Q 010028 379 SSVESTHRLCTLLNHFGE------------------------------------LRIKIKEYSGLQRQSVRSKTLKAFRE 422 (520)
Q Consensus 379 ~s~~~~~~l~~~L~~~~~------------------------------------~~~~v~~~~~~~~~~~r~~~~~~f~~ 422 (520)
=|++.|+..+++|....- .--++..+||++=+--++-+...|..
T Consensus 575 FSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqr 654 (1248)
T KOG0947|consen 575 FSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQR 654 (1248)
T ss_pred EccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhc
Confidence 999999999999977310 01247788999989899999999999
Q ss_pred CCceEEEEecccccCCCCCCCcEEEEccCC---------CCHHHHHHHHhhcccCCC--CCcEEEEEecc--hHHHHHHH
Q 010028 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAGQ--LGRCFTLLHKD--EVKRFKKL 489 (520)
Q Consensus 423 g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p---------~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~--~~~~~~~~ 489 (520)
|-++||++|.++++|||.|.-++|+ -++. -.+-+|.|++|||||.|- .|++|++.... +...++++
T Consensus 655 GlVKVLFATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 655 GLVKVLFATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred CceEEEeehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 9999999999999999999655544 3221 246799999999999994 58777776554 34444444
Q ss_pred H
Q 010028 490 L 490 (520)
Q Consensus 490 ~ 490 (520)
+
T Consensus 734 i 734 (1248)
T KOG0947|consen 734 I 734 (1248)
T ss_pred h
Confidence 3
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.8e-22 Score=212.22 Aligned_cols=365 Identities=17% Similarity=0.200 Sum_probs=228.5
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.|++.|. +..+.-.+--+..++||.|||+++.+|++.+++.. ..++|++|+..||.|
T Consensus 82 ~~ydVQl------iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g----~~VhIvT~ndyLA~R------------- 138 (908)
T PRK13107 82 RHFDVQL------LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTG----KGVHVITVNDYLARR------------- 138 (908)
T ss_pred CcCchHH------hcchHhcCCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEeCCHHHHHH-------------
Confidence 6666663 33322245568899999999999999998777643 359999999999999
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
..+++..+....++.+++..++.+.......
T Consensus 139 --------------------------D~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~----------------------- 169 (908)
T PRK13107 139 --------------------------DAENNRPLFEFLGLTVGINVAGLGQQEKKAA----------------------- 169 (908)
T ss_pred --------------------------HHHHHHHHHHhcCCeEEEecCCCCHHHHHhc-----------------------
Confidence 5566677777789999999998775444322
Q ss_pred cCCcEEEeCchHH-HHHHhcCCCccc-----ccccEEEeehHHHHHHH----------------HhhhhHHHHHHhhccC
Q 010028 210 SAVDILVATPGRL-MDHINATRGFTL-----EHLCYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD 267 (520)
Q Consensus 210 ~~~~Ili~Tp~~l-~~~l~~~~~~~~-----~~~~~lViDEah~l~~~----------------~~~~~l~~i~~~~~~~ 267 (520)
..++|++|||..| .+.|..+-.... ..+.++||||+|.++-. .....+..+...+...
T Consensus 170 Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~ 249 (908)
T PRK13107 170 YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQ 249 (908)
T ss_pred CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhh
Confidence 3579999999999 888876523333 67889999999987531 1222222222222210
Q ss_pred c----------cccccccc-ccccccccchhhhccc----cc-----------------------------cc-------
Q 010028 268 N----------ENRFSDAS-TFLPSAFGSLKTIRRC----GV-----------------------------ER------- 296 (520)
Q Consensus 268 ~----------~~~~~~~~-~~~~~~~~~~~~~~~~----~~-----------------------------~~------- 296 (520)
. .....+.. ........+...+... +. .+
T Consensus 250 ~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~ 329 (908)
T PRK13107 250 DKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQ 329 (908)
T ss_pred hhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 0 00000000 0000000000000000 00 00
Q ss_pred -------------CCCCCCc---------------------------------cchheeeecccccCCchhhhhcccCCc
Q 010028 297 -------------GFKDKPY---------------------------------PRLVKMVLSATLTQDPNKLAQLDLHHP 330 (520)
Q Consensus 297 -------------~~~~~~~---------------------------------~~~~~i~~SaT~~~~~~~~~~~~l~~~ 330 (520)
....+.+ ...++-+||+|.......+.+. ++-
T Consensus 330 dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~i--Y~l 407 (908)
T PRK13107 330 DNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHI--YGL 407 (908)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHH--hCC
Confidence 0000000 0012444555543322222222 222
Q ss_pred eeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEecccc
Q 010028 331 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 408 (520)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~ 408 (520)
.++.+....+........ .+......|...+++.+... .+.++||||+|...++.++..|...+ +....+|+.+
T Consensus 408 ~Vv~IPTnkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~ 483 (908)
T PRK13107 408 DTVVVPTNRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKF 483 (908)
T ss_pred CEEECCCCCCccceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcc
Confidence 222332222211111111 12233455666666655543 67789999999999999999999876 8888999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEEecccccCCCCC-------------------------------------CCcEEEEccC
Q 010028 409 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE-------------------------------------GVNNVVNYDK 451 (520)
Q Consensus 409 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~-------------------------------------~~~~VI~~~~ 451 (520)
+..++..+.+.|+.|. |+|||+++++|.|+. +--+||-...
T Consensus 484 ~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer 561 (908)
T PRK13107 484 HEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTER 561 (908)
T ss_pred cHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEeccc
Confidence 9999999999999988 999999999999988 2336888889
Q ss_pred CCCHHHHHHHHhhcccCCCCCcEEEEEecchH-------HHHHHHHHHhc
Q 010028 452 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 494 (520)
Q Consensus 452 p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~-------~~~~~~~~~~~ 494 (520)
+.|..--.|..||+||.|.+|.+..|++=+|- +++.++++.+.
T Consensus 562 heSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~~~~~~~~~~~~~ 611 (908)
T PRK13107 562 HESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGMMKKLG 611 (908)
T ss_pred CchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhChHHHHHHHHHcC
Confidence 99999999999999999999999888876542 44556665553
No 103
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.90 E-value=1.6e-21 Score=211.60 Aligned_cols=431 Identities=16% Similarity=0.132 Sum_probs=225.6
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHH-hhhh---
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN-SARC--- 122 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~-~~~~--- 122 (520)
|| .+|+-|.+....+...+.++..+++.|+||+|||++|++|++... .+.+++|++||++|++|+. +.+.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 55 899999998888777777788999999999999999999988743 2458999999999999995 3333
Q ss_pred cccccccccccchhhhhHHhhh-cccchhcc-----chhhHHHHhhhccccc---c-eEEeccCccchHHHHHHHhhccc
Q 010028 123 KYCCKNIFGLIADHSIAEMCVQ-FDSLLFIS-----LPQVKDVFAAIAPAVG---L-SVGLAVGQSSIADEISELIKRPK 192 (520)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~---~-~v~~~~g~~~~~~~~~~~~~~~~ 192 (520)
++++.. ....+++.+..|.+ |...+... .......+-.|...+. + .+....+......++..-...+
T Consensus 317 ~~~~~~--~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~- 393 (820)
T PRK07246 317 EVFHID--CHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLS- 393 (820)
T ss_pred HhcCCc--EEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCC-
Confidence 332211 11345566667766 55433211 1111122223322221 0 1111122222233322111100
Q ss_pred cccc-ccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH--hh-------hhHHHH--
Q 010028 193 LEAG-ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQ-------AWLPTV-- 260 (520)
Q Consensus 193 ~~~~-~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~--~~-------~~l~~i-- 260 (520)
..++ ...+.....+.....++|+|+++..|...+.... .+..++.+||||||++.+.. +. .....+
T Consensus 394 ~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~ 471 (820)
T PRK07246 394 QSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQK 471 (820)
T ss_pred CCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHH
Confidence 1111 1233444444556789999999998877664432 35779999999999986431 00 000100
Q ss_pred -HH-----------------------hhccCc-------------------c-cccccccccc-----cccccchh----
Q 010028 261 -LQ-----------------------LTRSDN-------------------E-NRFSDASTFL-----PSAFGSLK---- 287 (520)
Q Consensus 261 -~~-----------------------~~~~~~-------------------~-~~~~~~~~~~-----~~~~~~~~---- 287 (520)
+. .+.... . .........+ .-|.....
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~ 551 (820)
T PRK07246 472 ALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEK 551 (820)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 00 000000 0 0000000000 00000000
Q ss_pred h---hccccccc-CCCCCCccchheeeeccccc--CCchhhhhcccCCceeeecccccc-----cCccccchhhhhccCC
Q 010028 288 T---IRRCGVER-GFKDKPYPRLVKMVLSATLT--QDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESK 356 (520)
Q Consensus 288 ~---~~~~~~~~-~~~~~~~~~~~~i~~SaT~~--~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 356 (520)
. +....... .+.........+|++|||++ +........++............. .++..+.... .....
T Consensus 552 ~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~-~~~~~ 630 (820)
T PRK07246 552 RVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVT-ETSDE 630 (820)
T ss_pred ceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCC-CCChH
Confidence 0 00000000 00000112246899999996 333322223333222111110000 0000000000 00001
Q ss_pred CcHHHHHHHHHh--cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc
Q 010028 357 LKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 434 (520)
Q Consensus 357 ~k~~~l~~~~~~--~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (520)
.-.+.+...+.. ..+++++|+++|.+..+.+++.|... ...+ ...|... .+.+++++|++++..||++|+.+
T Consensus 631 ~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~---~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sF 704 (820)
T PRK07246 631 VYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW---QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSF 704 (820)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc---CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchh
Confidence 111122222211 35789999999999999999999753 2334 4444322 24668999999989999999999
Q ss_pred ccCCCCCC--CcEEEEccCCC------------------------------CHHHHHHHHhhcccCCCCCcEEEEEecc-
Q 010028 435 TRGMDVEG--VNNVVNYDKPA------------------------------YIKTYIHRAGRTARAGQLGRCFTLLHKD- 481 (520)
Q Consensus 435 ~~Gidl~~--~~~VI~~~~p~------------------------------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~- 481 (520)
++|||+|+ ...+|+..+|. ....+.|.+||+.|...+--+++++++.
T Consensus 705 wEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~ 784 (820)
T PRK07246 705 WEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRI 784 (820)
T ss_pred hCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcc
Confidence 99999974 44566666551 2335669999999988665466666664
Q ss_pred hHH-HHHHHHHHhcC
Q 010028 482 EVK-RFKKLLQKADN 495 (520)
Q Consensus 482 ~~~-~~~~~~~~~~~ 495 (520)
..+ .-+.+++.+.+
T Consensus 785 ~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 785 LTKSYGKQILASLAE 799 (820)
T ss_pred cccHHHHHHHHhCCC
Confidence 233 44666666654
No 104
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.4e-21 Score=205.83 Aligned_cols=144 Identities=18% Similarity=0.267 Sum_probs=116.2
Q ss_pred CCHHHHHHHH-----HCCCCCc---chhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEE
Q 010028 35 LDPRLKVALQ-----NMGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106 (520)
Q Consensus 35 l~~~~~~~l~-----~~~~~~~---~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vli 106 (520)
+..++.+.+. .+||..| +|+|.+++..+.. +++++..++||+|||++|++|++.++... ..++|
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l----~~gvIAeaqTGeGKTLAf~LP~l~~aL~g----~~v~I 140 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAM----HKGFITEMQTGEGKTLTAVMPLYLNALTG----KPVHL 140 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhc----CCCeEEEeCCCCChHHHHHHHHHHHHhhc----CCeEE
Confidence 6667777666 4688888 9999998876654 88999999999999999999999887643 24899
Q ss_pred EcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHH
Q 010028 107 VLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 186 (520)
Q Consensus 107 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 186 (520)
|+||+.||.| ..+.+..+....++++++++||.+...+...
T Consensus 141 VTpTrELA~Q---------------------------------------dae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 141 VTVNDYLAQR---------------------------------------DCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred EeCCHHHHHH---------------------------------------HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 9999999999 5666666666778999999999887776433
Q ss_pred HhhcccccccccCCchhHHHhhccCCcEEEeCchHH-HHHHhcCCCcccc-------cccEEEeehHHHHH
Q 010028 187 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTLE-------HLCYLVVDETDRLL 249 (520)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~~~~-------~~~~lViDEah~l~ 249 (520)
+ .++|+||||+.| .+++..+ ...++ .+.++|+||||.|+
T Consensus 182 y-----------------------~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 Y-----------------------QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred c-----------------------CCCEEEECCChhHHHHhhCC-CCCcCHHHhhcccccEEEEechhhhh
Confidence 2 479999999999 8988864 23333 45899999999875
No 105
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=3.8e-21 Score=203.02 Aligned_cols=125 Identities=22% Similarity=0.272 Sum_probs=111.5
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 355 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
...+.+.+...+... .+.++||||++.+.++.+++.|...+ +.+..+|++++..+|.++++.|+.|++.|||||+
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 345666666666553 56789999999999999999999876 7899999999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEEEcc-----CCCCHHHHHHHHhhcccCCCCCcEEEEEecchH
Q 010028 433 AMTRGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483 (520)
Q Consensus 433 ~~~~Gidl~~~~~VI~~~-----~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 483 (520)
.+++|+|+|++++||+++ .|.+...|+||+||+||. ..|.+++|++..+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 999999999999999988 799999999999999998 58999999987543
No 106
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.90 E-value=8.1e-22 Score=217.82 Aligned_cols=199 Identities=14% Similarity=0.098 Sum_probs=131.2
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhh----hh
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA----RC 122 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~----~~ 122 (520)
+| .+|+-|.+.+..+...+.+++.+++.||||+|||++|++|++..... .+.+++|.++|+.|.+|+.+. ++
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---~~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---KEEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---cCCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 44 89999999888888777778899999999999999999999866543 245899999999999999774 67
Q ss_pred cccccccccccchhhhhHHhhh-cccchhccchh-----hHHHHhhhccccc---c-eEEeccCccchHHHHHHHhhccc
Q 010028 123 KYCCKNIFGLIADHSIAEMCVQ-FDSLLFISLPQ-----VKDVFAAIAPAVG---L-SVGLAVGQSSIADEISELIKRPK 192 (520)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~---~-~v~~~~g~~~~~~~~~~~~~~~~ 192 (520)
++++........+++.++.|.+ |...+...... ....+-.|..... + .+....+......++..-...+.
T Consensus 331 ~~~~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c~ 410 (928)
T PRK08074 331 KIFPFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESDG 410 (928)
T ss_pred HHcCCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCcccC
Confidence 7777666667778889988887 66544332111 1122233332221 0 11111222223333332211111
Q ss_pred c-ccc-ccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH
Q 010028 193 L-EAG-ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 193 ~-~~~-~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 250 (520)
. .++ ...+.....+.....++|+|+++..|+..+.... ..+...+++||||||++.+
T Consensus 411 ~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~-~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 411 GKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEE-PLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhc-ccCCCCCeEEEECCchHHH
Confidence 1 111 2234555555666789999999998877664322 3457789999999999864
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=1.7e-22 Score=180.56 Aligned_cols=149 Identities=33% Similarity=0.522 Sum_probs=118.0
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccccc
Q 010028 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131 (520)
Q Consensus 52 ~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~ 131 (520)
||+|.++++.+.. ++++++.||||+|||+++++++++.+... ...++++++|+++|+.|+
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~-------------- 60 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQ-------------- 60 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHH--------------
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccc--------------
Confidence 6899999999885 89999999999999999999999888764 344899999999999994
Q ss_pred ccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccC
Q 010028 132 LIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 211 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (520)
...+..+....+.++..++|+.....+... .+..+
T Consensus 61 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 95 (169)
T PF00270_consen 61 -------------------------FERLRKFFSNTNVRVVLLHGGQSISEDQRE--------------------VLSNQ 95 (169)
T ss_dssp -------------------------HHHHHHHTTTTTSSEEEESTTSCHHHHHHH--------------------HHHTT
T ss_pred -------------------------cccccccccccccccccccccccccccccc--------------------ccccc
Confidence 444555555567888888888775433222 12346
Q ss_pred CcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhcc
Q 010028 212 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 266 (520)
Q Consensus 212 ~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~ 266 (520)
++|+|+||+++...+...+. ++..+++|||||+|.+....+...+..++..+..
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 89999999999999987443 6677999999999999887777777777777543
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=6.2e-22 Score=209.89 Aligned_cols=304 Identities=20% Similarity=0.244 Sum_probs=199.0
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhccc
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDS 147 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (520)
.+.-++|.|+||+|||...-..+++.-. ..+..+.+.=|.+--|..+++.
T Consensus 64 ~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~R--------------------------- 113 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAER--------------------------- 113 (845)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHH---------------------------
Confidence 4778899999999999964444444322 1233566666998666664332
Q ss_pred chhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHh
Q 010028 148 LLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 227 (520)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~ 227 (520)
..+.++...+-.|+..+-..+ .......|-++|.+.|...+.
T Consensus 114 -----------vAeel~~~~G~~VGY~iRfe~---------------------------~~s~~Trik~mTdGiLlrei~ 155 (845)
T COG1643 114 -----------VAEELGEKLGETVGYSIRFES---------------------------KVSPRTRIKVMTDGILLREIQ 155 (845)
T ss_pred -----------HHHHhCCCcCceeeEEEEeec---------------------------cCCCCceeEEeccHHHHHHHh
Confidence 333333333323332221111 122356899999999999888
Q ss_pred cCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchh
Q 010028 228 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 307 (520)
Q Consensus 228 ~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (520)
.. ..++.+++||+||+|+=. -..+.+-.++..+....+ +..+
T Consensus 156 ~D--~~Ls~ys~vIiDEaHERS--l~tDilLgllk~~~~~rr----------------------------------~DLK 197 (845)
T COG1643 156 ND--PLLSGYSVVIIDEAHERS--LNTDILLGLLKDLLARRR----------------------------------DDLK 197 (845)
T ss_pred hC--cccccCCEEEEcchhhhh--HHHHHHHHHHHHHHhhcC----------------------------------CCce
Confidence 63 448899999999999621 112222223322111110 2368
Q ss_pred eeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCC-cHHHHHHHHH---hcCCCcEEEEecCHHH
Q 010028 308 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQ---SLGEEKCIVFTSSVES 383 (520)
Q Consensus 308 ~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~~~---~~~~~k~lIf~~s~~~ 383 (520)
+|+||||+ +.+.+...+..-|++ .+....+.+..... ....... -.+.+...+. ....+.+|||.+...+
T Consensus 198 iIimSATl--d~~rfs~~f~~apvi-~i~GR~fPVei~Y~---~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 198 LIIMSATL--DAERFSAYFGNAPVI-EIEGRTYPVEIRYL---PEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred EEEEeccc--CHHHHHHHcCCCCEE-EecCCccceEEEec---CCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 99999998 445555544444443 33333333221110 1111122 1222333333 3367889999999999
Q ss_pred HHHHHHHHhh-cCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEcc------------
Q 010028 384 THRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD------------ 450 (520)
Q Consensus 384 ~~~l~~~L~~-~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~------------ 450 (520)
.+..++.|.. .......+..+||.++..+..++++.-..|+.+|+++|++.+.++-+|++..||.-+
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 9999999987 222457899999999999999988888888888999999999999999999999755
Q ss_pred ------CCCCHHHHHHHHhhcccCCCCCcEEEEEecchHH
Q 010028 451 ------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484 (520)
Q Consensus 451 ------~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~ 484 (520)
-|.|..+..||.||+||.+ +|.|+-+++++++.
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred ceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 3356778899999999997 99999999986554
No 109
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=4.6e-23 Score=206.81 Aligned_cols=321 Identities=18% Similarity=0.207 Sum_probs=215.4
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
++-|+|..||.++-+ +.+++|.|-|.+|||.++-+++...+.. +.||++-+|-++|.+|=|+++
T Consensus 129 ~LDpFQ~~aI~Cidr----~eSVLVSAHTSAGKTVVAeYAIA~sLr~----kQRVIYTSPIKALSNQKYREl-------- 192 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDR----GESVLVSAHTSAGKTVVAEYAIAMSLRE----KQRVIYTSPIKALSNQKYREL-------- 192 (1041)
T ss_pred ccCchHhhhhhhhcC----CceEEEEeecCCCcchHHHHHHHHHHHh----cCeEEeeChhhhhcchhHHHH--------
Confidence 789999999988654 8999999999999999999988887764 358999999999999955542
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
...+. .|++.+|+.+ ++
T Consensus 193 ---------------------------~~EF~--------DVGLMTGDVT----------------------------In 209 (1041)
T KOG0948|consen 193 ---------------------------LEEFK--------DVGLMTGDVT----------------------------IN 209 (1041)
T ss_pred ---------------------------HHHhc--------ccceeeccee----------------------------eC
Confidence 11111 2455566644 44
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhh
Q 010028 210 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 289 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (520)
..+.-+|+|.+.|.+.+.++. .-...+.-|||||+|.|-+...+-..++-+=++
T Consensus 210 P~ASCLVMTTEILRsMLYRGS-EvmrEVaWVIFDEIHYMRDkERGVVWEETIIll------------------------- 263 (1041)
T KOG0948|consen 210 PDASCLVMTTEILRSMLYRGS-EVMREVAWVIFDEIHYMRDKERGVVWEETIILL------------------------- 263 (1041)
T ss_pred CCCceeeeHHHHHHHHHhccc-hHhheeeeEEeeeehhccccccceeeeeeEEec-------------------------
Confidence 556789999999999888754 346788999999999987765432211111111
Q ss_pred cccccccCCCCCCccchheeeecccccCCchhhhh--cccCCceeeeccccccc------CccccchhhhhccC------
Q 010028 290 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYK------LPERLESYKLICES------ 355 (520)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~--~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------ 355 (520)
..+++.|++|||++.......+ .....|..+....-++. .|..-...+..++.
T Consensus 264 -------------P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~Fre 330 (1041)
T KOG0948|consen 264 -------------PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFRE 330 (1041)
T ss_pred -------------cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccch
Confidence 1356789999999754443222 12223332222111100 00000000001110
Q ss_pred -------------------------------------CCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCC--
Q 010028 356 -------------------------------------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-- 396 (520)
Q Consensus 356 -------------------------------------~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~-- 396 (520)
....-.++..+-......+|||+=|+++|+.++-.+..+..
T Consensus 331 dnF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~ 410 (1041)
T KOG0948|consen 331 DNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNT 410 (1041)
T ss_pred HHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCC
Confidence 11222344444445567899999999999999988766211
Q ss_pred ----------------------------------CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCC
Q 010028 397 ----------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 442 (520)
Q Consensus 397 ----------------------------------~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~ 442 (520)
+.-++.+.|+++=+--++-+.-.|++|-.++|.||.+++.|+|.|.
T Consensus 411 deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA 490 (1041)
T KOG0948|consen 411 DEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA 490 (1041)
T ss_pred hhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc
Confidence 1124788999998988999999999999999999999999999996
Q ss_pred CcEEEEccCC---------CCHHHHHHHHhhcccCCCC--CcEEEEEecc-hHHHHHHH
Q 010028 443 VNNVVNYDKP---------AYIKTYIHRAGRTARAGQL--GRCFTLLHKD-EVKRFKKL 489 (520)
Q Consensus 443 ~~~VI~~~~p---------~s~~~~~Q~~GR~~R~~~~--g~~i~~~~~~-~~~~~~~~ 489 (520)
-++|+ ...- .|.-+|+|+.||+||.|.+ |.||++++.. +....+.+
T Consensus 491 kTVvF-T~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m 548 (1041)
T KOG0948|consen 491 KTVVF-TAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDM 548 (1041)
T ss_pred eeEEE-eeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHH
Confidence 55554 3211 2456899999999999964 7888888764 33334444
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.89 E-value=3.1e-21 Score=197.78 Aligned_cols=305 Identities=18% Similarity=0.169 Sum_probs=188.1
Q ss_pred CCCcchhhHHHHHhhhCCCCCCC-CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 126 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~-~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 126 (520)
-..||.||..||.++.+++..|+ ..++++.||+|||.++ +.++.+|.+. ....|+|||+-+++|+.|-+.+
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~-~~~KRVLFLaDR~~Lv~QA~~a------ 234 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS-GWVKRVLFLADRNALVDQAYGA------ 234 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc-chhheeeEEechHHHHHHHHHH------
Confidence 35899999999999999888874 5899999999999987 5577888776 3667999999999999995444
Q ss_pred cccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHH
Q 010028 127 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 206 (520)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (520)
++.+.+. +-.+..+.+..
T Consensus 235 ---------------------------------f~~~~P~-~~~~n~i~~~~---------------------------- 252 (875)
T COG4096 235 ---------------------------------FEDFLPF-GTKMNKIEDKK---------------------------- 252 (875)
T ss_pred ---------------------------------HHHhCCC-ccceeeeeccc----------------------------
Confidence 3333322 11222211110
Q ss_pred hhccCCcEEEeCchHHHHHHhcC----CCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccccccccccc
Q 010028 207 ELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 282 (520)
Q Consensus 207 ~~~~~~~Ili~Tp~~l~~~l~~~----~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 282 (520)
....+.|.++|++.+....... ..+....+++|||||||+-.-..+. .|+......
T Consensus 253 -~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~----~I~dYFdA~--------------- 312 (875)
T COG4096 253 -GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS----SILDYFDAA--------------- 312 (875)
T ss_pred -CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH----HHHHHHHHH---------------
Confidence 1123589999999998877653 2244566999999999985444433 333332221
Q ss_pred ccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhccc-CCc------------------eeeecc--c--cc
Q 010028 283 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-HHP------------------LFLTTG--E--TR 339 (520)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l-~~~------------------~~~~~~--~--~~ 339 (520)
.++++||+....+.-.-.+. +.| ..+.+. . +.
T Consensus 313 -------------------------~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G 367 (875)
T COG4096 313 -------------------------TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDG 367 (875)
T ss_pred -------------------------HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccC
Confidence 12234554432221111111 111 111100 0 00
Q ss_pred c---cCccccchh-hhh---------cc------CCCcHHHHHHHHHhc--------CCCcEEEEecCHHHHHHHHHHHh
Q 010028 340 Y---KLPERLESY-KLI---------CE------SKLKPLYLVALLQSL--------GEEKCIVFTSSVESTHRLCTLLN 392 (520)
Q Consensus 340 ~---~~~~~~~~~-~~~---------~~------~~~k~~~l~~~~~~~--------~~~k~lIf~~s~~~~~~l~~~L~ 392 (520)
. ...+..... ... .+ -....+.+...+... .-+|+||||.+..||+.++..|.
T Consensus 368 ~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~ 447 (875)
T COG4096 368 WKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALV 447 (875)
T ss_pred cCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHH
Confidence 0 000000000 000 00 011222333333221 14689999999999999999998
Q ss_pred hcCC--CceeEEEeccccCHHHHHHHHHHHHc--CCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccC
Q 010028 393 HFGE--LRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 468 (520)
Q Consensus 393 ~~~~--~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~ 468 (520)
+..+ .+--+..+.|+.. +-...+..|.. --.+|.|+.+++..|||+|.|-.+|.+..-.|...|.||+||+-|.
T Consensus 448 ~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 448 NEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred HhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 7532 1223555666543 34455666654 2357889999999999999999999999999999999999999996
Q ss_pred C
Q 010028 469 G 469 (520)
Q Consensus 469 ~ 469 (520)
-
T Consensus 526 ~ 526 (875)
T COG4096 526 C 526 (875)
T ss_pred C
Confidence 4
No 111
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.88 E-value=6.6e-21 Score=198.23 Aligned_cols=319 Identities=21% Similarity=0.248 Sum_probs=189.7
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccc
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 126 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 126 (520)
|+ .|+..|.- | ...+..|+++-+.||||.|||.-.++..+- .. .++.++++++||..|+.|.++.++++
T Consensus 80 G~-~~ws~QR~-W---akR~~rg~SFaiiAPTGvGKTTfg~~~sl~--~a--~kgkr~yii~PT~~Lv~Q~~~kl~~~-- 148 (1187)
T COG1110 80 GF-RPWSAQRV-W---AKRLVRGKSFAIIAPTGVGKTTFGLLMSLY--LA--KKGKRVYIIVPTTTLVRQVYERLKKF-- 148 (1187)
T ss_pred CC-CchHHHHH-H---HHHHHcCCceEEEcCCCCchhHHHHHHHHH--HH--hcCCeEEEEecCHHHHHHHHHHHHHH--
Confidence 55 99999964 3 234446999999999999999854433222 22 24578999999999999976664443
Q ss_pred cccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHH
Q 010028 127 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 206 (520)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (520)
.+..+ .....+. .|+..+..+....+. .
T Consensus 149 ---------------------------------~e~~~-~~~~~~~-yh~~l~~~ekee~le-----------------~ 176 (1187)
T COG1110 149 ---------------------------------AEDAG-SLDVLVV-YHSALPTKEKEEALE-----------------R 176 (1187)
T ss_pred ---------------------------------HhhcC-Ccceeee-eccccchHHHHHHHH-----------------H
Confidence 22222 2344444 666655544433221 1
Q ss_pred hhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccc--------ccccccc
Q 010028 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR--------FSDASTF 278 (520)
Q Consensus 207 ~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~--------~~~~~~~ 278 (520)
....+.||+|+|.+.+...+..... .+++++++|++|.++..+ ..+..++.++.-..... +.....
T Consensus 177 i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~- 250 (1187)
T COG1110 177 IESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLY- 250 (1187)
T ss_pred HhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhh-
Confidence 2335789999998877665554221 358899999999987543 23333333322110000 000000
Q ss_pred ccccccchhhhcccccccCCCCCCccchheeeecccccCCchh--hhhcccCCceeeecccccccCccccchhhhhccCC
Q 010028 279 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICESK 356 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
-.+..+....... ..++..........++|+.|||..+.-.. +.+..++ +..+... ....++.+.+...
T Consensus 251 ~~~~~~~~~e~~~-~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~-~~LRNIvD~y~~~--- 321 (1187)
T COG1110 251 GEKRAERVREELR-EVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGG-EGLRNIVDIYVES--- 321 (1187)
T ss_pred hhhhHHHHHHHHH-HHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCccc-hhhhheeeeeccC---
Confidence 0000000000000 00000111122345689999998654322 2222222 1111111 1122333332222
Q ss_pred CcHHHHHHHHHhcCCCcEEEEecC---HHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEe--
Q 010028 357 LKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-- 431 (520)
Q Consensus 357 ~k~~~l~~~~~~~~~~k~lIf~~s---~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-- 431 (520)
.-.+.+.++++.+. ..+|||++. ++.++.++++|+.+| +++..+|+. +++.++.|..|++++||+.
T Consensus 322 ~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvAs 392 (1187)
T COG1110 322 ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHG---INAELIHAE-----KEEALEDFEEGEVDVLVGVAS 392 (1187)
T ss_pred ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcC---ceEEEeecc-----chhhhhhhccCceeEEEEecc
Confidence 55666777777774 478999999 899999999999877 889888863 3678999999999999886
Q ss_pred --cccccCCCCCC-CcEEEEccCC
Q 010028 432 --DAMTRGMDVEG-VNNVVNYDKP 452 (520)
Q Consensus 432 --~~~~~Gidl~~-~~~VI~~~~p 452 (520)
+.+.+|+|+|. +..+|.++.|
T Consensus 393 yYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 393 YYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccceeecCCchhheeEEEEecCC
Confidence 56889999997 8889988877
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=9.4e-22 Score=205.54 Aligned_cols=319 Identities=19% Similarity=0.189 Sum_probs=203.2
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..+++-|..|+..+..........++.+.||||||.+|+-.+.+.+. .|..+|+|+|-.+|..|+.+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~----~GkqvLvLVPEI~Ltpq~~~r-------- 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA----QGKQVLVLVPEIALTPQLLAR-------- 264 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH----cCCEEEEEeccccchHHHHHH--------
Confidence 47889999999998875522377999999999999999765555444 345899999999999995222
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
.-.. ++.++..++++.+..++...|. ...
T Consensus 265 ------------------------------f~~r----Fg~~v~vlHS~Ls~~er~~~W~-----------------~~~ 293 (730)
T COG1198 265 ------------------------------FKAR----FGAKVAVLHSGLSPGERYRVWR-----------------RAR 293 (730)
T ss_pred ------------------------------HHHH----hCCChhhhcccCChHHHHHHHH-----------------HHh
Confidence 2222 3577888999988887766554 345
Q ss_pred ccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhh------hhHHHHHHhhccCccccccccccccccc
Q 010028 209 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ------AWLPTVLQLTRSDNENRFSDASTFLPSA 282 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 282 (520)
.....|+|||-. .++ .+++++++|||||-|. .+|. -+.+.+--..
T Consensus 294 ~G~~~vVIGtRS----AlF----~Pf~~LGLIIvDEEHD---~sYKq~~~prYhARdvA~~R------------------ 344 (730)
T COG1198 294 RGEARVVIGTRS----ALF----LPFKNLGLIIVDEEHD---SSYKQEDGPRYHARDVAVLR------------------ 344 (730)
T ss_pred cCCceEEEEech----hhc----CchhhccEEEEecccc---ccccCCcCCCcCHHHHHHHH------------------
Confidence 567899999933 223 4688999999999994 3322 1111111111
Q ss_pred ccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc-cCccccchhhhhccCCCc---
Q 010028 283 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKLK--- 358 (520)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k--- 358 (520)
....+.++|+-|||++ .+.+....-+............ .....+.-..........
T Consensus 345 ------------------a~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~ 404 (730)
T COG1198 345 ------------------AKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRS 404 (730)
T ss_pred ------------------HHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCcc
Confidence 1113557899999975 3333322111111111111110 001111111111111111
Q ss_pred -HHHHHHHHHhc--CCCcEEEEecCH------------------------------------------------------
Q 010028 359 -PLYLVALLQSL--GEEKCIVFTSSV------------------------------------------------------ 381 (520)
Q Consensus 359 -~~~l~~~~~~~--~~~k~lIf~~s~------------------------------------------------------ 381 (520)
-..+...+++. .++++|+|.|.+
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 12344444332 567788888877
Q ss_pred ------HHHHHHHHHHhhcCCCceeEEEeccccCHHH--HHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCC-
Q 010028 382 ------ESTHRLCTLLNHFGELRIKIKEYSGLQRQSV--RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP- 452 (520)
Q Consensus 382 ------~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~--r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p- 452 (520)
.-++++++.|... .++.++..+.++..... -+..+..|.+|+.+|||+|+++..|.|+|++++|...+..
T Consensus 485 ~L~~~G~GterieeeL~~~-FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~ 563 (730)
T COG1198 485 HLRAVGPGTERIEEELKRL-FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADT 563 (730)
T ss_pred eeEEecccHHHHHHHHHHH-CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechh
Confidence 2346666666655 45677887877766543 5678999999999999999999999999999997765532
Q ss_pred -----C--C----HHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 453 -----A--Y----IKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 453 -----~--s----~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
. + ...+.|-+||+||.+++|.+++=...
T Consensus 564 ~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~ 602 (730)
T COG1198 564 GLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYN 602 (730)
T ss_pred hhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCC
Confidence 1 1 22567999999999888888765443
No 113
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.87 E-value=3.4e-20 Score=198.84 Aligned_cols=200 Identities=19% Similarity=0.074 Sum_probs=124.0
Q ss_pred CCCCcchhhHHHHHhhhCCCCC-----CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhh-
Q 010028 47 GISSLFPVQVAVWQETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA- 120 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~-----~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~- 120 (520)
|| .+|+-|.+.+..+...+.. ++.++|.||||+|||++|++|++-..... +.+++|-+.|+.|.+|+.+.
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~---~k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE---KKKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHhhh
Confidence 55 8999999988888777655 36788999999999999999988655532 45799999999999999765
Q ss_pred ---hhcccccccccccchhhhhHHhhh-cccchhccc--h---------------hh---HHHHhh-hccc--ccceEEe
Q 010028 121 ---RCKYCCKNIFGLIADHSIAEMCVQ-FDSLLFISL--P---------------QV---KDVFAA-IAPA--VGLSVGL 173 (520)
Q Consensus 121 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~---------------~~---~~~~~~-~~~~--~~~~v~~ 173 (520)
+++.++......+.+++.++.|.+ |...+.... . .. ...+.. |... .|-.-.+
T Consensus 99 lP~l~~~l~~~~~~~llKGr~nYlCl~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~t~tGD~del 178 (697)
T PRK11747 99 LPLLLKISGLDFKFTLAKGRGRYVCPRKLAALASDEGTQQDLLLFLDDELTPPDEEEQKLLARLAKALATGKWDGDRDHW 178 (697)
T ss_pred hhHHHHHcCCCceEEEEcCccccccHHHHHHHhccccccchhhhhccccccCCCHHHHHHHHHHHHHHhcCCCcCcHhhC
Confidence 677777777777789999999987 665432211 0 00 111111 2111 1111000
Q ss_pred -ccCccchHHHHHHHhhccc-cccc-ccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccc--cccEEEeehHHHH
Q 010028 174 -AVGQSSIADEISELIKRPK-LEAG-ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE--HLCYLVVDETDRL 248 (520)
Q Consensus 174 -~~g~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~--~~~~lViDEah~l 248 (520)
...+.....++..-...+. ..++ ...+.....+.....++|+|+++..|...+..+....+. ..+++||||||++
T Consensus 179 ~~~~~~~~w~~v~~~~~~C~~~~Cp~~~~Cf~~~ar~~a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L 258 (697)
T PRK11747 179 PEPIDDSLWQRITTDKHSCLGRNCPYFRECPFFKARREIDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHL 258 (697)
T ss_pred cCCCcHHHHHHhhcCccccCCCCCCCCccChHHHHHHHHhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccch
Confidence 1111112222221111111 1122 223444455555678899999999887666421222333 4788999999987
Q ss_pred HH
Q 010028 249 LR 250 (520)
Q Consensus 249 ~~ 250 (520)
.+
T Consensus 259 ~d 260 (697)
T PRK11747 259 PD 260 (697)
T ss_pred HH
Confidence 54
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=2.9e-20 Score=198.65 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=85.8
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCCCc--eeEEEeccccCHH---------------------HHHHHHHHHHc-CCce
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS---------------------VRSKTLKAFRE-GKIQ 426 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~~~--~~v~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~ 426 (520)
+++++|+|.++.+|..+.+.|....... .....+++..+.. ....++++|++ ++.+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 4899999999999999999987653221 2334455443221 23468889976 6889
Q ss_pred EEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccC-CCC-CcEEEEEecchHHHHHHHHHHhcC
Q 010028 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQL-GRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 427 vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~-~~~-g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
|||+++++..|+|.|.++.++...+..+. .++|++||+.|. ... ..+.++--....+.+++.++.+.+
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g~~~~l~~Al~~y~~ 663 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRGLEKSLIDALSLYGN 663 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcChHHHHHHHHHHhch
Confidence 99999999999999999998866665554 589999999994 322 123333333455666666555443
No 115
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.86 E-value=6.5e-21 Score=191.15 Aligned_cols=229 Identities=21% Similarity=0.321 Sum_probs=160.5
Q ss_pred CCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhc
Q 010028 211 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 290 (520)
Q Consensus 211 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (520)
...|.+.|.++|+.-+... ..++++++||+||||. ..-..+.+-.+++.+-..+
T Consensus 140 ~TrikymTDG~LLRE~l~D--p~LskYsvIIlDEAHE--Rsl~TDiLlGlLKki~~~R---------------------- 193 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILKD--PLLSKYSVIILDEAHE--RSLHTDILLGLLKKILKKR---------------------- 193 (674)
T ss_pred ceeEEEecchHHHHHHhcC--CccccccEEEEechhh--hhhHHHHHHHHHHHHHhcC----------------------
Confidence 4579999999998876652 4578999999999995 1122233444444332211
Q ss_pred ccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCC---cHHHHHHHHH
Q 010028 291 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 367 (520)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~~~ 367 (520)
+..++|++|||+ +.+.+.+.+...|.+...+ ..+. -.+.... ...... -...+..+..
T Consensus 194 -------------~~LklIimSATl--da~kfS~yF~~a~i~~i~G-R~fP--Vei~y~~-~p~~dYv~a~~~tv~~Ih~ 254 (674)
T KOG0922|consen 194 -------------PDLKLIIMSATL--DAEKFSEYFNNAPILTIPG-RTFP--VEILYLK-EPTADYVDAALITVIQIHL 254 (674)
T ss_pred -------------CCceEEEEeeee--cHHHHHHHhcCCceEeecC-CCCc--eeEEecc-CCchhhHHHHHHHHHHHHc
Confidence 245799999998 4555665555545443322 2222 1111111 111111 1223334444
Q ss_pred hcCCCcEEEEecCHHHHHHHHHHHhhcCC-----CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCC
Q 010028 368 SLGEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 442 (520)
Q Consensus 368 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~~-----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~ 442 (520)
..+.+-+|||.++.++.+.+++.|.+... ....+..+||.++..+..+++..-..|..+|+++|++.+..+-+|+
T Consensus 255 ~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 255 TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecc
Confidence 45778999999999999999999987521 1114567999999999999998888899999999999999999999
Q ss_pred CcEEEEcc------------------CCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHH
Q 010028 443 VNNVVNYD------------------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485 (520)
Q Consensus 443 ~~~VI~~~------------------~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 485 (520)
+..||+-+ .|.|-.+-.||.||+||.+ +|+|+-++.++++..
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 99999744 3567788999999999997 999999999887744
No 116
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=2.1e-19 Score=191.28 Aligned_cols=151 Identities=22% Similarity=0.312 Sum_probs=124.7
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc
Q 010028 356 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433 (520)
Q Consensus 356 ~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (520)
..+.+.+...+... .+.++||||++...++.+++.|...+ +.+..+||+++..+|..+++.|+.|+..|+|||+.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 34556666666543 57789999999999999999999765 88999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEccC-----CCCHHHHHHHHhhcccCCCCCcEEEEEec---------chHHHHHHHHHHhcCCCCC
Q 010028 434 MTRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHK---------DEVKRFKKLLQKADNDSCP 499 (520)
Q Consensus 434 ~~~Gidl~~~~~VI~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~---------~~~~~~~~~~~~~~~~~~~ 499 (520)
+++|+|+|++++||+++. |.+...|+||+||+||. ..|.+++|++. .+....+++...++...
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 582 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEH-- 582 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhcc--
Confidence 999999999999999874 78999999999999996 68999999984 46666777766555433
Q ss_pred cccCCchhhhhhhh
Q 010028 500 IHSIPSSLIESLRP 513 (520)
Q Consensus 500 ~~~~~~~~~~~~~~ 513 (520)
.-+|.+.+..+..
T Consensus 583 -~~~~~~~~~~~~~ 595 (652)
T PRK05298 583 -GITPKTIKKKIRD 595 (652)
T ss_pred -CCCChhHHHHHHH
Confidence 4455555554443
No 117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.86 E-value=4.3e-20 Score=191.83 Aligned_cols=192 Identities=16% Similarity=0.026 Sum_probs=112.6
Q ss_pred hHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc-c---cccc
Q 010028 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC-C---KNIF 130 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~-~---~~~~ 130 (520)
|.+.+..+...+.+++.+++.||||+|||++|++|++..+... .+.++||++||++|++|+++.+..+. . ....
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 7777777777777788999999999999999999999877632 24689999999999999999877664 1 2222
Q ss_pred cccchhhhhHHhhh-cccchhccchhhHHHHhhhccccc------ceEEec----------cCccchHH---HHHHHhhc
Q 010028 131 GLIADHSIAEMCVQ-FDSLLFISLPQVKDVFAAIAPAVG------LSVGLA----------VGQSSIAD---EISELIKR 190 (520)
Q Consensus 131 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~----------~g~~~~~~---~~~~~~~~ 190 (520)
....+++.+..|.+ |+..+..........+..|....+ ....+. +|+..... ........
T Consensus 80 ~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~~~ 159 (636)
T TIGR03117 80 AGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDVTL 159 (636)
T ss_pred EEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhhhc
Confidence 33345666777776 655443322222233334433321 000111 11111000 00000000
Q ss_pred ccccccccCCchhHHHhh---ccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH
Q 010028 191 PKLEAGICYDPEDVLQEL---QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~---~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 250 (520)
.....+..+ ........ ...+||+|+++..|...+.... -.+..++.+||||||++.+
T Consensus 160 ~~~~~~~~~-~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~-~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 160 AIREDDEDK-RLVESREYEAEARRCRILFCTHAMLGLAFRDKW-GLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred cccCCCccc-HHHHHHHHhhccccCCEEEECHHHHHHHhhhhc-CCCCCCCEEEEeCCcchHH
Confidence 000000111 12222222 4678999999998877654422 2456789999999998754
No 118
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.85 E-value=1.7e-19 Score=182.10 Aligned_cols=372 Identities=19% Similarity=0.201 Sum_probs=233.4
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..+++||.+-++.++....+|-++++....|.|||+.. ++.+..+.......+..||++|.-.|..
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GPfLVi~P~StL~N------------- 231 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGPFLVIAPKSTLDN------------- 231 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCCeEEEeeHhhHHH-------------
Confidence 47999999999999988878889999999999999876 4455555543333457999999877754
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
|.+.+.+|++ ++++.+++|+.........-. ..
T Consensus 232 ---------------------------W~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~------------------~~ 264 (971)
T KOG0385|consen 232 ---------------------------WMNEFKRFTP--SLNVVVYHGDKEERAALRRDI------------------ML 264 (971)
T ss_pred ---------------------------HHHHHHHhCC--CcceEEEeCCHHHHHHHHHHh------------------hc
Confidence 5566667766 688999999875444433211 12
Q ss_pred ccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccC---------------------
Q 010028 209 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD--------------------- 267 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~--------------------- 267 (520)
....+|+|||+++.+.--.- +.--..+++||||||++-+.. ..+..+++.+...
T Consensus 265 ~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLL 339 (971)
T KOG0385|consen 265 PGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKTDNRLLLTGTPLQNNLHELWALL 339 (971)
T ss_pred cCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhhhcchh--hHHHHHHHHhcccceeEeeCCcccccHHHHHHHH
Confidence 23689999999987553222 222346899999999985432 2333444433322
Q ss_pred ---cccccccccccccccccc------hhhhcc----------cccccCCCCCCccchh-eeeeccc----------ccC
Q 010028 268 ---NENRFSDASTFLPSAFGS------LKTIRR----------CGVERGFKDKPYPRLV-KMVLSAT----------LTQ 317 (520)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~~~~~~~~-~i~~SaT----------~~~ 317 (520)
.+..|.+... ..++|.. ...+.. +...........++.- .++.+-| +..
T Consensus 340 nFllPdiF~~~e~-F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~k 418 (971)
T KOG0385|consen 340 NFLLPDIFNSAED-FDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMK 418 (971)
T ss_pred HhhchhhccCHHH-HHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHh
Confidence 2222222110 0111110 000000 0000000000111100 1111111 000
Q ss_pred Cc-----------------hhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEe
Q 010028 318 DP-----------------NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFT 378 (520)
Q Consensus 318 ~~-----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~ 378 (520)
++ --..+..+.+|..+........ .......+....|...|..++..+ .+.++|||.
T Consensus 419 dl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~p----yttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFS 494 (971)
T KOG0385|consen 419 DLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPP----YTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFS 494 (971)
T ss_pred cchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCC----CCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeH
Confidence 11 1112344455555544222111 111223445677888888888765 788999999
Q ss_pred cCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC---ceEEEEecccccCCCCCCCcEEEEccCCCCH
Q 010028 379 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 455 (520)
Q Consensus 379 ~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~---~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~ 455 (520)
.-...+..+.++..-.+ +....+.|.++..+|...++.|.+.. .-.|++|.+..-|||+..++.||.||..|++
T Consensus 495 Qmt~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNP 571 (971)
T KOG0385|consen 495 QMTRMLDILEDYCMLRG---YEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNP 571 (971)
T ss_pred HHHHHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCc
Confidence 98888888888776554 78899999999999999999998743 3457999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCcEEEE--Eecc--hHHHHHHHHHHhc
Q 010028 456 KTYIHRAGRTARAGQLGRCFTL--LHKD--EVKRFKKLLQKAD 494 (520)
Q Consensus 456 ~~~~Q~~GR~~R~~~~g~~i~~--~~~~--~~~~~~~~~~~~~ 494 (520)
-.-.|+.-|++|.|+...|.+| +..+ +...+++...++.
T Consensus 572 Q~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 572 QVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred hhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 9999999999999987776666 3333 3344444444443
No 119
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=2.8e-19 Score=172.46 Aligned_cols=314 Identities=20% Similarity=0.208 Sum_probs=210.2
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..++|||..++...+.+. ..++.+|..|+|+|||++-+-++. . -..++|+||.+-..++|
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~-t------ikK~clvLcts~VSVeQ------------ 360 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAAC-T------IKKSCLVLCTSAVSVEQ------------ 360 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeee-e------ecccEEEEecCccCHHH------------
Confidence 469999999998877643 126789999999999998755333 2 23469999999999999
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
|...+..|..-.+-.++.++++.... .
T Consensus 361 ---------------------------WkqQfk~wsti~d~~i~rFTsd~Ke~--------------------------~ 387 (776)
T KOG1123|consen 361 ---------------------------WKQQFKQWSTIQDDQICRFTSDAKER--------------------------F 387 (776)
T ss_pred ---------------------------HHHHHHhhcccCccceEEeecccccc--------------------------C
Confidence 77778888877777788877765421 2
Q ss_pred ccCCcEEEeCchHHHHHHhcC----C---CcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccc
Q 010028 209 QSAVDILVATPGRLMDHINAT----R---GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 281 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~----~---~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 281 (520)
..++.|+|+|+.++..--.+- + .+.-..++++++||+|.+...-|...+..+-.+.+
T Consensus 388 ~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK---------------- 451 (776)
T KOG1123|consen 388 PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK---------------- 451 (776)
T ss_pred CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh----------------
Confidence 257789999987763311110 0 01134578999999999876665555554444432
Q ss_pred cccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhc-ccCCceeeeccc--------------ccccCc---
Q 010028 282 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL-DLHHPLFLTTGE--------------TRYKLP--- 343 (520)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~-~l~~~~~~~~~~--------------~~~~~~--- 343 (520)
++++||+-...+.+... ++-.|..+.... .....|
T Consensus 452 ---------------------------LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~ 504 (776)
T KOG1123|consen 452 ---------------------------LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTP 504 (776)
T ss_pred ---------------------------ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCH
Confidence 66788876554444332 222333222110 000000
Q ss_pred --------cc-cchhhhhccCCCcHH---HHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHH
Q 010028 344 --------ER-LESYKLICESKLKPL---YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 411 (520)
Q Consensus 344 --------~~-~~~~~~~~~~~~k~~---~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~ 411 (520)
.. -....+..-+..|+. +|+.... ..+.|+|||..++-.+..++-.|.. -+++|..++.
T Consensus 505 eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ 575 (776)
T KOG1123|consen 505 EFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQN 575 (776)
T ss_pred HHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCC--------ceEECCCchh
Confidence 00 011112222334443 3333332 2788999999999888888776654 3588999999
Q ss_pred HHHHHHHHHHcC-CceEEEEecccccCCCCCCCcEEEEccCC-CCHHHHHHHHhhcccCCC------CCcEEEEEecchH
Q 010028 412 VRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQ------LGRCFTLLHKDEV 483 (520)
Q Consensus 412 ~r~~~~~~f~~g-~~~vLv~T~~~~~Gidl~~~~~VI~~~~p-~s~~~~~Q~~GR~~R~~~------~g~~i~~~~~~~~ 483 (520)
||.++++.|+-+ .++.+..+.+....+|+|..+++|..... .|..+-.||.||..|..+ +...+.+++.+-.
T Consensus 576 ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 576 ERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred HHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 999999999864 67888889999999999999999988754 577899999999998653 2345566777655
Q ss_pred HHHH
Q 010028 484 KRFK 487 (520)
Q Consensus 484 ~~~~ 487 (520)
+++.
T Consensus 656 EM~Y 659 (776)
T KOG1123|consen 656 EMYY 659 (776)
T ss_pred HHHh
Confidence 5553
No 120
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.82 E-value=1.8e-18 Score=187.17 Aligned_cols=77 Identities=22% Similarity=0.205 Sum_probs=66.1
Q ss_pred HCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 45 ~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.+....|++.|.+++..+...+.+++.+++.||||+|||++|++|++...... +.++++.++|+.+.+|+.++...+
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~---~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE---GKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc---CCcEEEECCCHHHHHHHHHhhcch
Confidence 34556999999999998887776677799999999999999999999877654 357999999999999999987665
No 121
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.82 E-value=4.4e-19 Score=183.02 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=70.6
Q ss_pred EEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEcc-CCCCHHHHHHHHhhcccCCCCCcEEEEEe
Q 010028 401 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD-KPAYIKTYIHRAGRTARAGQLGRCFTLLH 479 (520)
Q Consensus 401 v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~-~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~ 479 (520)
+.+.|++++...|..+.-.|+.|...||++|.+++-|||.|.-++|+-.| +--++-.|.|++||+||.|-+-.+-+.+-
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 77899999999999999999999999999999999999999555444444 34568899999999999996533333444
Q ss_pred cchHHHHHHHHH
Q 010028 480 KDEVKRFKKLLQ 491 (520)
Q Consensus 480 ~~~~~~~~~~~~ 491 (520)
.-...++++++.
T Consensus 1045 giP~~kv~rLlt 1056 (1330)
T KOG0949|consen 1045 GIPRQKVQRLLT 1056 (1330)
T ss_pred eCcHHHHHHHHH
Confidence 444445544443
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4e-19 Score=187.81 Aligned_cols=124 Identities=21% Similarity=0.254 Sum_probs=108.2
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEe
Q 010028 354 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 431 (520)
Q Consensus 354 ~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 431 (520)
....|...+...+... .+.++||||+|+..++.+++.|...+ +....+|+ ...+|+..+..|+.+...|+|||
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 3445777888877654 67899999999999999999999876 77888997 46789999999999999999999
Q ss_pred cccccCCCCC---CCc-----EEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 432 DAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 432 ~~~~~Gidl~---~~~-----~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
++.+||+|++ ++. +||.+..|.|...|.|++||+||.|.+|.++.|++.+|
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 9999999999 343 35888999999999999999999999999999998855
No 123
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=2.7e-18 Score=170.85 Aligned_cols=225 Identities=18% Similarity=0.232 Sum_probs=160.4
Q ss_pred CCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhc
Q 010028 211 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 290 (520)
Q Consensus 211 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (520)
..-|-++|.++|+.-+.. ..++.+++++||||||.= .-..+.+..+++.+...+
T Consensus 355 kTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHER--TL~TDILfgLvKDIar~R---------------------- 408 (902)
T KOG0923|consen 355 KTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHER--TLHTDILFGLVKDIARFR---------------------- 408 (902)
T ss_pred ceeeeeecchhHHHHHhc--cccccceeEEEeehhhhh--hhhhhHHHHHHHHHHhhC----------------------
Confidence 446889999999776664 367899999999999951 111234444444433311
Q ss_pred ccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHH---
Q 010028 291 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--- 367 (520)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~--- 367 (520)
+..++++.|||+ +.+.+...+-.-|++. +...++.+ .-++...+....++..+.-+.
T Consensus 409 -------------pdLKllIsSAT~--DAekFS~fFDdapIF~-iPGRRyPV----di~Yt~~PEAdYldAai~tVlqIH 468 (902)
T KOG0923|consen 409 -------------PDLKLLISSATM--DAEKFSAFFDDAPIFR-IPGRRYPV----DIFYTKAPEADYLDAAIVTVLQIH 468 (902)
T ss_pred -------------CcceEEeecccc--CHHHHHHhccCCcEEe-ccCcccce----eeecccCCchhHHHHHHhhheeeE
Confidence 456789999997 5666666555555544 33333332 223333343333433333222
Q ss_pred -hcCCCcEEEEecCHHHHHHHHHHHhhc----C--CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCC
Q 010028 368 -SLGEEKCIVFTSSVESTHRLCTLLNHF----G--ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 440 (520)
Q Consensus 368 -~~~~~k~lIf~~s~~~~~~l~~~L~~~----~--~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl 440 (520)
..+.+-+|||....+..+.....|.+. | ...+-+..+|+.+++....++++.-..|-.+|+++|++.+..+.+
T Consensus 469 ~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 469 LTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred eccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee
Confidence 236788999999999888777776542 2 234667889999999999999988888999999999999999999
Q ss_pred CCCcEEEEcc------------------CCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 441 EGVNNVVNYD------------------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 441 ~~~~~VI~~~------------------~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
+++..||.-+ .|.|..+-.||+||+||.| +|+|+-++..-.
T Consensus 549 dgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 549 DGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred cCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 9999999744 3456778889999999998 999999988543
No 124
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=6.3e-19 Score=178.42 Aligned_cols=319 Identities=16% Similarity=0.205 Sum_probs=194.0
Q ss_pred hhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh-ccccccEEEEc-CCHHHHHhHHhhhhcccccccccccchhhhh
Q 010028 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVL-PTRDLALQVNSARCKYCCKNIFGLIADHSIA 139 (520)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~-~~~~~~vlil~-Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~ 139 (520)
+..++..+.-++|||.||||||...--.+...-... ....+-.|-++ |.|--|--++++
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkR------------------- 324 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKR------------------- 324 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHH-------------------
Confidence 333444466689999999999985333233321111 11223366666 888777765444
Q ss_pred HHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCc
Q 010028 140 EMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 219 (520)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 219 (520)
+...+..++...+..+ .+.+ .+.....|.++|.
T Consensus 325 ----------------Va~EL~~~~~eVsYqI--Rfd~-----------------------------ti~e~T~IkFMTD 357 (1172)
T KOG0926|consen 325 ----------------VAFELGVLGSEVSYQI--RFDG-----------------------------TIGEDTSIKFMTD 357 (1172)
T ss_pred ----------------HHHHhccCccceeEEE--Eecc-----------------------------ccCCCceeEEecc
Confidence 4444444433333222 2221 1234568999999
Q ss_pred hHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCC
Q 010028 220 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 299 (520)
Q Consensus 220 ~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (520)
+.|+.-+.+ .+.+.++++||+||||. .+-+.+.+-.++.++-..+. +....
T Consensus 358 GVLLrEi~~--DflL~kYSvIIlDEAHE--RSvnTDILiGmLSRiV~LR~-------------------------k~~ke 408 (1172)
T KOG0926|consen 358 GVLLREIEN--DFLLTKYSVIILDEAHE--RSVNTDILIGMLSRIVPLRQ-------------------------KYYKE 408 (1172)
T ss_pred hHHHHHHHH--hHhhhhceeEEechhhh--ccchHHHHHHHHHHHHHHHH-------------------------HHhhh
Confidence 999888876 47789999999999995 22223333333333222111 11112
Q ss_pred CCCccchheeeecccccCCchhhh---hcccCCceeeecccccccCccccchhhhhccCCCc---HHHHHHHHHhcCCCc
Q 010028 300 DKPYPRLVKMVLSATLTQDPNKLA---QLDLHHPLFLTTGETRYKLPERLESYKLICESKLK---PLYLVALLQSLGEEK 373 (520)
Q Consensus 300 ~~~~~~~~~i~~SaT~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~~~~~~~~k 373 (520)
++...+.++|+||||+. +..+. +.+-.-|-++.+....+.+..... -..+...- +.....+.+.++.+.
T Consensus 409 ~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfPVsIHF~---krT~~DYi~eAfrKtc~IH~kLP~G~ 483 (1172)
T KOG0926|consen 409 QCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFPVSIHFN---KRTPDDYIAEAFRKTCKIHKKLPPGG 483 (1172)
T ss_pred hcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCceEEEec---cCCCchHHHHHHHHHHHHhhcCCCCc
Confidence 23445778999999985 22322 223233334444444333221111 11111111 112223344568899
Q ss_pred EEEEecCHHHHHHHHHHHhhcCC---------------------------------------------------------
Q 010028 374 CIVFTSSVESTHRLCTLLNHFGE--------------------------------------------------------- 396 (520)
Q Consensus 374 ~lIf~~s~~~~~~l~~~L~~~~~--------------------------------------------------------- 396 (520)
+|||+....++..+++.|+...+
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 99999999999999999977200
Q ss_pred ---------------------------------------CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccC
Q 010028 397 ---------------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 437 (520)
Q Consensus 397 ---------------------------------------~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (520)
....|..+++-++.....+++..-.+|..-++|+|++.+..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 01235666667777777777777777888899999999999
Q ss_pred CCCCCCcEEEEccCC--------C----------CHHHHHHHHhhcccCCCCCcEEEEEecc
Q 010028 438 MDVEGVNNVVNYDKP--------A----------YIKTYIHRAGRTARAGQLGRCFTLLHKD 481 (520)
Q Consensus 438 idl~~~~~VI~~~~p--------~----------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 481 (520)
+.+|++..||..+.- . |..+--||+||+||.| +|.|+-+++..
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999976532 1 2233349999999998 99999888763
No 125
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=5e-18 Score=183.72 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=122.6
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
|.|..++|.|.+.+..+...+.+++..++.+|||+|||++.+.++++.....+ ...+++|++.|..-..|..++++++-
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 45777799999999999999988999999999999999999999998766432 34689999999999999999999963
Q ss_pred cc--------ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-c---------ceEEeccCccc--------
Q 010028 126 CK--------NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-G---------LSVGLAVGQSS-------- 179 (520)
Q Consensus 126 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~v~~~~g~~~-------- 179 (520)
.. .....+.....+.+|.+-+.-.......+...+....... . -.|. .+....
T Consensus 85 ~~~~~~~~~~~~i~~v~L~SR~~lCin~~v~~~~~~~~~~~~C~~l~~~~~~~~~~~~~~~~~C~-yy~~~~~~~~~~~~ 163 (705)
T TIGR00604 85 SYRTPRIGEESPVSGLSLASRKNLCLHPEVSKERQGKVVNGKCIKLTVSKIKEQRTEKPNVESCE-FYENFDELREVEDL 163 (705)
T ss_pred hccccccccCCceeEEEechHhhcccChHHHhhcchhhHHHHHHHHHhhhhcccccccCCCCCCC-CCchhhhhhhhhhh
Confidence 11 1233344566677775422111111111111222111000 0 0010 111110
Q ss_pred ------hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCC-CcccccccEEEeehHHHHHH
Q 010028 180 ------IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 180 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~l~~ 250 (520)
..+++..+. .....+++...+.....++|+|+.+..+.+--.+.. ..++++ .+|||||||++.+
T Consensus 164 ~~~~~~diEdL~~~g------~~~~~CPY~~sr~~~~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 164 LLSEIMDIEDLVEYG------ELLGLCPYFATRKMLPFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred cccCCCCHHHHHHhc------ccCCCCccHHHHHhhhcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 011111111 113467888999999999999999988755333211 123333 6999999998744
No 126
>COG4889 Predicted helicase [General function prediction only]
Probab=99.79 E-value=4.8e-19 Score=180.62 Aligned_cols=376 Identities=16% Similarity=0.183 Sum_probs=206.0
Q ss_pred HHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHH
Q 010028 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118 (520)
Q Consensus 39 ~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~ 118 (520)
+...+.-+.-..|||||+.|++.+...+..+...-+.+.+|+|||+..+- +...+.. .++|+|+|+.+|-.|..
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-----~~iL~LvPSIsLLsQTl 223 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-----ARILFLVPSISLLSQTL 223 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-----hheEeecchHHHHHHHH
Confidence 33334444567999999999999999888777788889999999998754 5554443 48999999999999953
Q ss_pred hhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccccccc
Q 010028 119 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 198 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 198 (520)
+++.. - ....++...+.++.....- .+-.+-+++.-+.+
T Consensus 224 rew~~---------------------------------------~-~~l~~~a~aVcSD~kvsrs-~eDik~sdl~~p~s 262 (1518)
T COG4889 224 REWTA---------------------------------------Q-KELDFRASAVCSDDKVSRS-AEDIKASDLPIPVS 262 (1518)
T ss_pred HHHhh---------------------------------------c-cCccceeEEEecCcccccc-ccccccccCCCCCc
Confidence 33211 0 1112222222222111111 01111111222222
Q ss_pred CCchhHHH-----hhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccc
Q 010028 199 YDPEDVLQ-----ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273 (520)
Q Consensus 199 ~~~~~~~~-----~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~ 273 (520)
.+...+.. ....+--|+++|++.+...-.. +..-+..+++||.||||+--...+.. ...+.|
T Consensus 263 T~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~fDliicDEAHRTtGa~~a~-----------dd~saF- 329 (1518)
T COG4889 263 TDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEFDLIICDEAHRTTGATLAG-----------DDKSAF- 329 (1518)
T ss_pred ccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCccEEEecchhccccceecc-----------cCcccc-
Confidence 22222211 1223456999999998665543 33557889999999999632111000 000000
Q ss_pred cccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhh-----------------------------
Q 010028 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ----------------------------- 324 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~----------------------------- 324 (520)
. +-.........+.++++||+.-..+....
T Consensus 330 -----t----------------~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~Fge 388 (1518)
T COG4889 330 -----T----------------RVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGE 388 (1518)
T ss_pred -----e----------------eecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHH
Confidence 0 00011112233456777776422111111
Q ss_pred ----cccCCceeeecccccccCccccchhhhhccCCCcHHHH---HHHHH----hc--------------CCCcEEEEec
Q 010028 325 ----LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL---VALLQ----SL--------------GEEKCIVFTS 379 (520)
Q Consensus 325 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l---~~~~~----~~--------------~~~k~lIf~~ 379 (520)
..+.+..+.....+...+...+.............+-. +-.+. +. +-.++|-||.
T Consensus 389 Av~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k 468 (1518)
T COG4889 389 AVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAK 468 (1518)
T ss_pred HHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHH
Confidence 11111111111111111111111111111111111111 11111 10 1237889999
Q ss_pred CHHHHHHHHHHHhh-----------c-CCCceeEEEeccccCHHHHHHHHHHH---HcCCceEEEEecccccCCCCCCCc
Q 010028 380 SVESTHRLCTLLNH-----------F-GELRIKIKEYSGLQRQSVRSKTLKAF---REGKIQVLVSSDAMTRGMDVEGVN 444 (520)
Q Consensus 380 s~~~~~~l~~~L~~-----------~-~~~~~~v~~~~~~~~~~~r~~~~~~f---~~g~~~vLv~T~~~~~Gidl~~~~ 444 (520)
+.++...++..+.. . ....+.+....|.|+..+|...+..- ...+.+||-....+++|||+|.++
T Consensus 469 ~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLD 548 (1518)
T COG4889 469 DIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALD 548 (1518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccc
Confidence 99888777765543 1 12234455566899999996665543 456788998899999999999999
Q ss_pred EEEEccCCCCHHHHHHHHhhcccCCC---CCcEEEE-------------EecchHHHHHHHHHHhcC
Q 010028 445 NVVNYDKPAYIKTYIHRAGRTARAGQ---LGRCFTL-------------LHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 445 ~VI~~~~p~s~~~~~Q~~GR~~R~~~---~g~~i~~-------------~~~~~~~~~~~~~~~~~~ 495 (520)
-||.+++-.|....+|.+||++|..+ -|..|+= .....++.+..+++-+..
T Consensus 549 sViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRS 615 (1518)
T COG4889 549 SVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRS 615 (1518)
T ss_pred eEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHh
Confidence 99999999999999999999999753 2433322 223456667777776643
No 127
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.79 E-value=5.7e-18 Score=179.23 Aligned_cols=310 Identities=19% Similarity=0.245 Sum_probs=206.3
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhccc
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDS 147 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (520)
+++.++|.|.||+|||.-..-.+++.....+ ...++++--|.|--|--++++.
T Consensus 187 ~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRV-------------------------- 239 (924)
T KOG0920|consen 187 ENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERV-------------------------- 239 (924)
T ss_pred hCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHH--------------------------
Confidence 4788999999999999987777888877665 5566666679988777765542
Q ss_pred chhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHh
Q 010028 148 LLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 227 (520)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~ 227 (520)
. ...+...+-.|+.-++..+ .......+++||.+.|+..+.
T Consensus 240 ---------a---~ER~~~~g~~VGYqvrl~~---------------------------~~s~~t~L~fcTtGvLLr~L~ 280 (924)
T KOG0920|consen 240 ---------A---KERGESLGEEVGYQVRLES---------------------------KRSRETRLLFCTTGVLLRRLQ 280 (924)
T ss_pred ---------H---HHhccccCCeeeEEEeeec---------------------------ccCCceeEEEecHHHHHHHhc
Confidence 1 1112222333333222211 111245799999999999998
Q ss_pred cCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchh
Q 010028 228 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 307 (520)
Q Consensus 228 ~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (520)
. ...+..+..+|+||+|.= ....+.+-.+++.+-.. .+..+
T Consensus 281 ~--~~~l~~vthiivDEVHER--~i~~DflLi~lk~lL~~-----------------------------------~p~Lk 321 (924)
T KOG0920|consen 281 S--DPTLSGVTHIIVDEVHER--SINTDFLLILLKDLLPR-----------------------------------NPDLK 321 (924)
T ss_pred c--CcccccCceeeeeeEEEc--cCCcccHHHHHHHHhhh-----------------------------------CCCce
Confidence 7 355788999999999951 12223333333332221 15678
Q ss_pred eeeecccccCCchhhhhcccCCceeeecccccccCc---------------cccchh------------hhhccCCCcHH
Q 010028 308 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP---------------ERLESY------------KLICESKLKPL 360 (520)
Q Consensus 308 ~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------~~~~~~------------~~~~~~~~k~~ 360 (520)
+|+||||+. .+.+...+...|++...+.. +.+. ....++ ......+...+
T Consensus 322 vILMSAT~d--ae~fs~YF~~~pvi~i~grt-fpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLD--AELFSDYFGGCPVITIPGRT-FPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecc--hHHHHHHhCCCceEeecCCC-cchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999985 45555545555554433211 1100 000000 00111123334
Q ss_pred HHHHHHH----hcCCCcEEEEecCHHHHHHHHHHHhhcCC----CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 361 YLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 361 ~l~~~~~----~~~~~k~lIf~~s~~~~~~l~~~L~~~~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
.+..++. ....+.+|||.++...+..+.+.|..... ..+-+..+|+.|+..+.+.+++....|..+|+++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 4444333 23567899999999999999999975321 235678899999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEEEcc--------CC----------CCHHHHHHHHhhcccCCCCCcEEEEEecchHHHH
Q 010028 433 AMTRGMDVEGVNNVVNYD--------KP----------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486 (520)
Q Consensus 433 ~~~~Gidl~~~~~VI~~~--------~p----------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~ 486 (520)
+.+.+|-++++-.||+.+ +- .|..+-.||.||+||.- +|.|+.++.+...+.+
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-PGICYHLYTRSRYEKL 549 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc-CCeeEEeechhhhhhc
Confidence 999999999999999755 22 23456679999999985 9999999988665443
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.77 E-value=1.4e-18 Score=183.65 Aligned_cols=371 Identities=19% Similarity=0.218 Sum_probs=238.7
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..+|.||.+-++.++..+..++++++....|.|||+..+ ..+..+.....-.+..|+++|--.+..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~~~gpflvvvplst~~~------------- 434 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQIHGPFLVVVPLSTITA------------- 434 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhhccCCeEEEeehhhhHH-------------
Confidence 689999999999988888889999999999999997542 234444333223456899999877654
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
|.+.+..|. ++++.+++|.....+.+.++.-...- ...
T Consensus 435 ---------------------------W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~------------~~~ 472 (1373)
T KOG0384|consen 435 ---------------------------WEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSS------------NTK 472 (1373)
T ss_pred ---------------------------HHHHHHHHh---hhceeeeecchhHHHHHHHHHheecC------------Ccc
Confidence 666777775 78999999998888777765321100 000
Q ss_pred ccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH----------------------hhhhHHHHHHhhcc
Q 010028 209 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA----------------------YQAWLPTVLQLTRS 266 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~----------------------~~~~l~~i~~~~~~ 266 (520)
.-.++++++|++.++.--...+.+ ...+++|||||++.+.. ....++++..++.-
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~i---~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~F 549 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSKI---PWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHF 549 (1373)
T ss_pred ccccceeehhhHHHhccHhhhccC---CcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcc
Confidence 114689999999885533332223 35799999999875432 12334455555544
Q ss_pred Cccccccccccccccccc-------chhh----hcccccccCCCCCCccc---hheeeeccc--------ccCCchhhh-
Q 010028 267 DNENRFSDASTFLPSAFG-------SLKT----IRRCGVERGFKDKPYPR---LVKMVLSAT--------LTQDPNKLA- 323 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~---~~~i~~SaT--------~~~~~~~~~- 323 (520)
..+..|..+..+..+... .+.. .--+...........+. +--|-+|+- +..+...+.
T Consensus 550 l~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK 629 (1373)
T KOG0384|consen 550 LMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK 629 (1373)
T ss_pred cCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc
Confidence 455555554444433300 0100 00000001111111111 111223321 222222211
Q ss_pred ----------------hcccCCceeeecccccccCccc----cchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCH
Q 010028 324 ----------------QLDLHHPLFLTTGETRYKLPER----LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSV 381 (520)
Q Consensus 324 ----------------~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~ 381 (520)
+..+.+|..+............ -..+.....+..|+-.|..++..+ .+.+||||..=+
T Consensus 630 G~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMV 709 (1373)
T KOG0384|consen 630 GAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMV 709 (1373)
T ss_pred cCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHH
Confidence 2334445444333222111000 012233344566666677777655 567999999999
Q ss_pred HHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC---CceEEEEecccccCCCCCCCcEEEEccCCCCHHHH
Q 010028 382 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 458 (520)
Q Consensus 382 ~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~ 458 (520)
..+..|+++|...+ +....+.|......|++.++.|.+- ..-.|+||.+..-|||+..++.||+||..|++-.-
T Consensus 710 RmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQND 786 (1373)
T KOG0384|consen 710 RMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQND 786 (1373)
T ss_pred HHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchH
Confidence 99999999999877 8889999999999999999999873 45689999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCcE--EEEEecc
Q 010028 459 IHRAGRTARAGQLGRC--FTLLHKD 481 (520)
Q Consensus 459 ~Q~~GR~~R~~~~g~~--i~~~~~~ 481 (520)
+|+-.|++|.|+...| +-|+.++
T Consensus 787 LQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 787 LQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred HHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999976554 4455554
No 129
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.2e-17 Score=164.80 Aligned_cols=221 Identities=19% Similarity=0.294 Sum_probs=150.8
Q ss_pred CCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhc
Q 010028 211 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 290 (520)
Q Consensus 211 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (520)
...|-++|.+.|+.-... ...+.++++||+||||.= .-..+.+..+++.....+
T Consensus 445 ~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHER--slNtDilfGllk~~larR---------------------- 498 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHER--SLNTDILFGLLKKVLARR---------------------- 498 (1042)
T ss_pred ceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhc--ccchHHHHHHHHHHHHhh----------------------
Confidence 446889999988664432 356789999999999962 112233333443322211
Q ss_pred ccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHh--
Q 010028 291 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-- 368 (520)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-- 368 (520)
...++|++|||+ +...+...+.+.|.+...+. .+.+ .+ .....+..+++-..+++
T Consensus 499 -------------rdlKliVtSATm--~a~kf~nfFgn~p~f~IpGR-TyPV--~~-----~~~k~p~eDYVeaavkq~v 555 (1042)
T KOG0924|consen 499 -------------RDLKLIVTSATM--DAQKFSNFFGNCPQFTIPGR-TYPV--EI-----MYTKTPVEDYVEAAVKQAV 555 (1042)
T ss_pred -------------ccceEEEeeccc--cHHHHHHHhCCCceeeecCC-ccce--EE-----EeccCchHHHHHHHHhhhe
Confidence 245789999997 56666666665565443322 1111 11 11112222333333322
Q ss_pred -----cCCCcEEEEecCHHHHHHHHHHHhhc-------CCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccccc
Q 010028 369 -----LGEEKCIVFTSSVESTHRLCTLLNHF-------GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 436 (520)
Q Consensus 369 -----~~~~k~lIf~~s~~~~~~l~~~L~~~-------~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (520)
...+.+|||.+..++.+..+..++.. +..++.+..+++.++..-..+++..-..|..+++|+|++.+.
T Consensus 556 ~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAET 635 (1042)
T KOG0924|consen 556 QIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAET 635 (1042)
T ss_pred EeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhh
Confidence 25578999999998777666655431 123688999999999988888888777889999999999999
Q ss_pred CCCCCCCcEEEEcc------------------CCCCHHHHHHHHhhcccCCCCCcEEEEEecc
Q 010028 437 GMDVEGVNNVVNYD------------------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 481 (520)
Q Consensus 437 Gidl~~~~~VI~~~------------------~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 481 (520)
.+.+|++..||..+ .|.|..+--||.||+||.| +|.|+-++..+
T Consensus 636 SLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 636 SLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 99999999999755 4566778889999999998 99999988764
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2.9e-16 Score=161.99 Aligned_cols=355 Identities=18% Similarity=0.197 Sum_probs=210.7
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|. .|++.|.-..-.+.. | -+....||.|||+++.+|++...+. |..+.+++||..||.|-++
T Consensus 75 lg~-r~ydvQlig~l~Ll~----G--~VaEM~TGEGKTLvA~l~a~l~AL~----G~~VhvvT~NdyLA~RDae------ 137 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLA----G--DVIEMATGEGKTLAGAIAAAGYALQ----GRRVHVITVNDYLARRDAE------ 137 (764)
T ss_pred cCC-CcchHHHHHHHHHhC----C--CcccccCCCCHHHHHHHHHHHHHHc----CCCeEEEcCCHHHHHHHHH------
Confidence 354 788888776655432 3 3669999999999999888876654 4579999999999999444
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
.+..+....++.+++..++.+...+...+
T Consensus 138 ---------------------------------~m~~ly~~LGLsvg~i~~~~~~~err~aY------------------ 166 (764)
T PRK12326 138 ---------------------------------WMGPLYEALGLTVGWITEESTPEERRAAY------------------ 166 (764)
T ss_pred ---------------------------------HHHHHHHhcCCEEEEECCCCCHHHHHHHH------------------
Confidence 45556666799999999887766554443
Q ss_pred HhhccCCcEEEeCchHH-HHHHhcCC-----CcccccccEEEeehHHHHHHH---------------HhhhhHHHHHHhh
Q 010028 206 QELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLLRE---------------AYQAWLPTVLQLT 264 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~~lViDEah~l~~~---------------~~~~~l~~i~~~~ 264 (520)
.+||.++|...+ .+.|..+- ..-...+.++||||+|.++=. .....+..+...+
T Consensus 167 -----~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L 241 (764)
T PRK12326 167 -----ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRL 241 (764)
T ss_pred -----cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhc
Confidence 469999998765 33333211 122456889999999976311 1222233333333
Q ss_pred ccCcccccc--cccccc--------------cccccc------hhhhc-----------------ccc--------cccC
Q 010028 265 RSDNENRFS--DASTFL--------------PSAFGS------LKTIR-----------------RCG--------VERG 297 (520)
Q Consensus 265 ~~~~~~~~~--~~~~~~--------------~~~~~~------~~~~~-----------------~~~--------~~~~ 297 (520)
......... .....+ ...+.. ...+. ..+ -.+.
T Consensus 242 ~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRv 321 (764)
T PRK12326 242 REGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRI 321 (764)
T ss_pred CcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCc
Confidence 221000000 000000 000000 00000 000 0000
Q ss_pred CCCCCc---------------------------------cchheeeecccccCCchhhhhcccCCceeeecccccccCcc
Q 010028 298 FKDKPY---------------------------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 344 (520)
Q Consensus 298 ~~~~~~---------------------------------~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 344 (520)
...+.+ ...++-+||+|.......+.+.+-.+ ++.+....+....
T Consensus 322 m~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IPtnkp~~R~ 399 (764)
T PRK12326 322 AQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG--VSVIPPNKPNIRE 399 (764)
T ss_pred CCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc--EEECCCCCCceee
Confidence 000000 01125666666654444444332222 2333322222111
Q ss_pred ccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHc
Q 010028 345 RLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422 (520)
Q Consensus 345 ~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 422 (520)
.... .+......|...+.+.+... .+.++||.|.|+...+.+...|...+ ++...+++.....|-+-+- +.
T Consensus 400 d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g---I~h~vLNAk~~~~EA~IIa---~A 472 (764)
T PRK12326 400 DEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG---VPAVVLNAKNDAEEARIIA---EA 472 (764)
T ss_pred cCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC---CcceeeccCchHhHHHHHH---hc
Confidence 1111 22233445666666655443 67789999999999999999999876 6777787765443322222 23
Q ss_pred CC-ceEEEEecccccCCCCC---------------CCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 423 GK-IQVLVSSDAMTRGMDVE---------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 423 g~-~~vLv~T~~~~~Gidl~---------------~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
|+ ..|.|||++..||.|+. +--+||....+.|..--.|..||+||.|.+|.+..|++=+|
T Consensus 473 G~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 473 GKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 53 57899999999999987 33468888899999999999999999999999888877543
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=2.6e-16 Score=166.20 Aligned_cols=124 Identities=17% Similarity=0.218 Sum_probs=93.5
Q ss_pred ccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC-CceEEE
Q 010028 353 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLV 429 (520)
Q Consensus 353 ~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~vLv 429 (520)
.....|...+.+.+... .+.++||-+.|++..+.+++.|...+ +...+++......|-+-+- +.| ...|.|
T Consensus 429 ~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~~~EA~IIa---~AG~~GaVTI 502 (913)
T PRK13103 429 LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYHEKEAEIIA---QAGRPGALTI 502 (913)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccchhHHHHHH---cCCCCCcEEE
Confidence 34455666666655543 67789999999999999999999876 5555566554433322222 345 457999
Q ss_pred EecccccCCCCC-------------------------------------CCcEEEEccCCCCHHHHHHHHhhcccCCCCC
Q 010028 430 SSDAMTRGMDVE-------------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 472 (520)
Q Consensus 430 ~T~~~~~Gidl~-------------------------------------~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g 472 (520)
||++..||-|+. +-=+||-...+.|..--.|..||+||.|.+|
T Consensus 503 ATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPG 582 (913)
T PRK13103 503 ATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPG 582 (913)
T ss_pred eccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCC
Confidence 999999999994 3346778889999999999999999999999
Q ss_pred cEEEEEecch
Q 010028 473 RCFTLLHKDE 482 (520)
Q Consensus 473 ~~i~~~~~~~ 482 (520)
.+-.|++-+|
T Consensus 583 sS~f~lSlED 592 (913)
T PRK13103 583 SSRFYLSLED 592 (913)
T ss_pred ceEEEEEcCc
Confidence 9888877543
No 132
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=2.2e-17 Score=174.42 Aligned_cols=321 Identities=18% Similarity=0.238 Sum_probs=213.1
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccccc
Q 010028 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFG 131 (520)
Q Consensus 52 ~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~ 131 (520)
++.|.++...+.+ .++++++.+|+|||||.++-++++. .....++++++|..+.+..+
T Consensus 1145 n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~-------------- 1202 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQ-------------- 1202 (1674)
T ss_pred CCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHH--------------
Confidence 7888887666554 5688999999999999998877765 23456899999999999885
Q ss_pred ccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccC
Q 010028 132 LIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 211 (520)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (520)
...+..++....|..+..+.|..+...... ..
T Consensus 1203 ------------------------~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~------------------------~~ 1234 (1674)
T KOG0951|consen 1203 ------------------------YRDWEKKFSKLLGLRIVKLTGETSLDLKLL------------------------QK 1234 (1674)
T ss_pred ------------------------HHHHHHhhccccCceEEecCCccccchHHh------------------------hh
Confidence 333445566667899999999877554432 34
Q ss_pred CcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcc
Q 010028 212 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 291 (520)
Q Consensus 212 ~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (520)
.+|+|+||+++-.+ + ..+.+++.|.||.|.+. ..++...+-++. ++.
T Consensus 1235 ~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~ig-g~~g~v~evi~S-~r~------------------------- 1281 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIG-GVYGAVYEVICS-MRY------------------------- 1281 (1674)
T ss_pred cceEEechhHHHHH-h-----hhhhcceEeeehhhhhc-ccCCceEEEEee-HHH-------------------------
Confidence 58999999996443 3 35778899999999875 333322222222 100
Q ss_pred cccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhcc-------CCCcHHHHHH
Q 010028 292 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVA 364 (520)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~k~~~l~~ 364 (520)
...+....++++.+|..+... ..+ .+.....+++..+.....|..++-...... ...+ ....
T Consensus 1282 ------ia~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~--~~~~ 1350 (1674)
T KOG0951|consen 1282 ------IASQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTK--PTYT 1350 (1674)
T ss_pred ------HHHHHHhheeEEEeehhhccc-hhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhh--hHHH
Confidence 000001244678888777533 333 344444555555555444444332111111 1111 1122
Q ss_pred HHHhc--CCCcEEEEecCHHHHHHHHHHHhhcC-------------------CCceeEEEeccccCHHHHHHHHHHHHcC
Q 010028 365 LLQSL--GEEKCIVFTSSVESTHRLCTLLNHFG-------------------ELRIKIKEYSGLQRQSVRSKTLKAFREG 423 (520)
Q Consensus 365 ~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~-------------------~~~~~v~~~~~~~~~~~r~~~~~~f~~g 423 (520)
.+.++ .+++++||++++++|..++..|-.+. ....+..+-|.+++..+..-+-..|..|
T Consensus 1351 ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g 1430 (1674)
T KOG0951|consen 1351 AIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG 1430 (1674)
T ss_pred HHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC
Confidence 22332 56789999999999988877553311 0012222338899999998999999999
Q ss_pred CceEEEEecccccCCCCCCCcEEEEcc-----------CCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHH
Q 010028 424 KIQVLVSSDAMTRGMDVEGVNNVVNYD-----------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491 (520)
Q Consensus 424 ~~~vLv~T~~~~~Gidl~~~~~VI~~~-----------~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~ 491 (520)
.+.|+|.... ..|+-.. .+.||.++ .+-++....|+.|++.| .|+|+++.+......++++..
T Consensus 1431 ~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1431 AIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred cEEEEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 9999999888 7888777 45555433 23458899999999988 679999999999999999875
No 133
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.71 E-value=5e-16 Score=142.11 Aligned_cols=186 Identities=34% Similarity=0.549 Sum_probs=129.0
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
+++..|+++|.++++.+.. . +.+++.+|||+|||.++..+++..+... ...++++++|+..++.|+.+.
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~~~~~~~---- 73 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRG--KGKRVLVLVPTRELAEQWAEE---- 73 (201)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhccc--CCCcEEEEeCCHHHHHHHHHH----
Confidence 4677999999999998876 4 8999999999999998888888876654 245799999999999995444
Q ss_pred cccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhH
Q 010028 125 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 204 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (520)
+...............++........
T Consensus 74 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 99 (201)
T smart00487 74 -----------------------------------LKKLGPSLGLKVVGLYGGDSKREQLR------------------- 99 (201)
T ss_pred -----------------------------------HHHHhccCCeEEEEEeCCcchHHHHH-------------------
Confidence 33333222212222233322222211
Q ss_pred HHhhccCC-cEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccc
Q 010028 205 LQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 283 (520)
Q Consensus 205 ~~~~~~~~-~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 283 (520)
...... +++++|++.+.+.+.... .....++++|+||+|++....+...+..++..+.
T Consensus 100 --~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~------------------ 158 (201)
T smart00487 100 --KLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP------------------ 158 (201)
T ss_pred --HHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC------------------
Confidence 122333 999999999998887743 4567789999999999875455556666665541
Q ss_pred cchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecc
Q 010028 284 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 336 (520)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~ 336 (520)
...+++++|||++.........+......+...
T Consensus 159 --------------------~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 159 --------------------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred --------------------ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 234689999999887777777666655544433
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.71 E-value=7.4e-16 Score=160.67 Aligned_cols=377 Identities=20% Similarity=0.121 Sum_probs=207.9
Q ss_pred CcchhhHHHHHhhhCCCCCC------CCEEEECCCCChhhHHhHHHHHHHHhhhcccc-----ccEEEEcCCHHHHHhHH
Q 010028 50 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-----LRALVVLPTRDLALQVN 118 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~------~~~li~apTGsGKT~~~ll~il~~l~~~~~~~-----~~vlil~Pt~~La~q~~ 118 (520)
.++|||++.+.-++..+... .-+++...+|+|||+..+. .++.++.. .+. .+.|||+|. .|+..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Is-flwtlLrq-~P~~~~~~~k~lVV~P~-sLv~n-- 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCIS-FIWTLLRQ-FPQAKPLINKPLVVAPS-SLVNN-- 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHH-HHHHHHHh-CcCccccccccEEEccH-HHHHH--
Confidence 79999999988877654322 3367788999999998744 55555544 244 679999995 77888
Q ss_pred hhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch-HHHHHHHhhcccccccc
Q 010028 119 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGI 197 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~ 197 (520)
|.+.+.+|.....+....++|.... ......+...
T Consensus 313 -------------------------------------WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~------- 348 (776)
T KOG0390|consen 313 -------------------------------------WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFL------- 348 (776)
T ss_pred -------------------------------------HHHHHHHhccccccceeeeecccchhhhhhHHHHHh-------
Confidence 5666666666556666666766653 1111111000
Q ss_pred cCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH----------------------hhh
Q 010028 198 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA----------------------YQA 255 (520)
Q Consensus 198 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~----------------------~~~ 255 (520)
-...-...|++.+++.+...... +....++++|+||.|.+-+.. +..
T Consensus 349 --------~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QN 417 (776)
T KOG0390|consen 349 --------GYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQN 417 (776)
T ss_pred --------hhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccc
Confidence 00111235888898888765554 446678999999999764321 223
Q ss_pred hHHHHHHhhccCcccccccccccccccccchhh-------------------hccc---cccc---CCCCCCccch--he
Q 010028 256 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT-------------------IRRC---GVER---GFKDKPYPRL--VK 308 (520)
Q Consensus 256 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~---~~~~---~~~~~~~~~~--~~ 308 (520)
.+.+++..+...++..+.....+.......... .+.. -+-+ .....+.|.. .+
T Consensus 418 dl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~v 497 (776)
T KOG0390|consen 418 DLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYV 497 (776)
T ss_pred cHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEE
Confidence 344444444443333222222111111100000 0000 0000 0111111211 13
Q ss_pred eeecccccCC-----c----------------hhhhhcccCCceeeeccccc-----ccC------ccccchhhhhccCC
Q 010028 309 MVLSATLTQD-----P----------------NKLAQLDLHHPLFLTTGETR-----YKL------PERLESYKLICESK 356 (520)
Q Consensus 309 i~~SaT~~~~-----~----------------~~~~~~~l~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~ 356 (520)
|++-.|..+. + ...+...+.+|..+...... ... +.............
T Consensus 498 v~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks 577 (776)
T KOG0390|consen 498 VFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKS 577 (776)
T ss_pred EEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhh
Confidence 4444432210 0 00011222333333211100 000 00011111111123
Q ss_pred CcHHHHHHHHHhcCCCcE---EEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC--Cce-EEEE
Q 010028 357 LKPLYLVALLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQ-VLVS 430 (520)
Q Consensus 357 ~k~~~l~~~~~~~~~~k~---lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g--~~~-vLv~ 430 (520)
.++..|..++... ..++ .+++........+...+-.. .+..+..++|.|+..+|+.+++.|.+. ... .|.+
T Consensus 578 ~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~--~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlS 654 (776)
T KOG0390|consen 578 GKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRW--RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLS 654 (776)
T ss_pred hHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhh--cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEe
Confidence 3444455544222 2222 33344445554444444432 158999999999999999999999874 324 4577
Q ss_pred ecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEE--ec--chHHHHHHH
Q 010028 431 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL--HK--DEVKRFKKL 489 (520)
Q Consensus 431 T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~--~~--~~~~~~~~~ 489 (520)
|-++++||++-+.+.||++|++|+++.-.|+++|+-|.|+...|++|- .. -|.+.|++-
T Consensus 655 sKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 655 SKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred cccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHH
Confidence 889999999999999999999999999999999999999888887763 22 345555443
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.70 E-value=1.4e-16 Score=135.67 Aligned_cols=118 Identities=39% Similarity=0.580 Sum_probs=107.6
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc
Q 010028 357 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 434 (520)
Q Consensus 357 ~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (520)
.|...+..++... .++++||||++...++.+++.|...+ ..+..+||.++..+|..+.+.|.++...+|++|+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 5677777777765 47899999999999999999998743 789999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 435 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 435 ~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
++|+|+|++++||.++.|++...+.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999988887654
No 136
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=6.4e-16 Score=157.33 Aligned_cols=366 Identities=18% Similarity=0.149 Sum_probs=215.7
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..+.+||++.++.+++.-..+.-.++-...|.|||+..+. .|..+...+.-..++|||||. .+..|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k~~~paLIVCP~-Tii~q------------ 269 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGKLTKPALIVCPA-TIIHQ------------ 269 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcccccCceEEEccH-HHHHH------------
Confidence 4689999999999888666667789999999999986533 233333221233579999996 66778
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCC--chhHHH
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD--PEDVLQ 206 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 206 (520)
|...+..|.+. .+|..++|..+...+- ...... ..-+.+
T Consensus 270 ---------------------------W~~E~~~w~p~--~rv~ilh~t~s~~r~~----------~~~~~~~~~~~L~r 310 (923)
T KOG0387|consen 270 ---------------------------WMKEFQTWWPP--FRVFILHGTGSGARYD----------ASHSSHKKDKLLIR 310 (923)
T ss_pred ---------------------------HHHHHHHhCcc--eEEEEEecCCcccccc----------cchhhhhhhhhhee
Confidence 56666777664 4555555443321100 000000 001112
Q ss_pred hhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccC-------------------
Q 010028 207 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD------------------- 267 (520)
Q Consensus 207 ~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~------------------- 267 (520)
.......|+|+|++.+.-. ...+.-...+++|+||.|.+-+.. ..+...+..++..
T Consensus 311 ~~~~~~~ilitty~~~r~~---~d~l~~~~W~y~ILDEGH~IrNpn--s~islackki~T~~RiILSGTPiQNnL~ELws 385 (923)
T KOG0387|consen 311 KVATDGGILITTYDGFRIQ---GDDLLGILWDYVILDEGHRIRNPN--SKISLACKKIRTVHRIILSGTPIQNNLTELWS 385 (923)
T ss_pred eecccCcEEEEehhhhccc---CcccccccccEEEecCcccccCCc--cHHHHHHHhccccceEEeeCccccchHHHHHH
Confidence 2334567999998886321 112333457899999999875432 1122222222221
Q ss_pred -----cccccccccccccccc-----c---------------c---------hhhhcccccccCCCCCCccchheeeecc
Q 010028 268 -----NENRFSDASTFLPSAF-----G---------------S---------LKTIRRCGVERGFKDKPYPRLVKMVLSA 313 (520)
Q Consensus 268 -----~~~~~~~~~~~~~~~~-----~---------------~---------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 313 (520)
.++.+.....|..... | . --.+|++..+...-.-+...-++++|+-
T Consensus 386 LfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~L 465 (923)
T KOG0387|consen 386 LFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRL 465 (923)
T ss_pred HhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEec
Confidence 1111111111100000 0 0 0000000000000011222334677776
Q ss_pred cccCCchh------------------------hhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc
Q 010028 314 TLTQDPNK------------------------LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 369 (520)
Q Consensus 314 T~~~~~~~------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~ 369 (520)
|..+.... ..+..+.+|......... ...-..+........|...+..++...
T Consensus 466 T~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~---~~~~~D~~g~~k~sGKm~vl~~ll~~W 542 (923)
T KOG0387|consen 466 TKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDED---EKQGPDYEGDPKRSGKMKVLAKLLKDW 542 (923)
T ss_pred cHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccc---cccCCCcCCChhhcchHHHHHHHHHHH
Confidence 64321100 111222233222221100 000011113344556777777777653
Q ss_pred --CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCc-e-EEEEecccccCCCCCCCcE
Q 010028 370 --GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI-Q-VLVSSDAMTRGMDVEGVNN 445 (520)
Q Consensus 370 --~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~-~-vLv~T~~~~~Gidl~~~~~ 445 (520)
.+.++|+|..++..+..+...|.. ..++....+.|..+.+.|..++++|.+++. . .|++|.+..-|+|+.+++.
T Consensus 543 ~kqg~rvllFsqs~~mLdilE~fL~~--~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnR 620 (923)
T KOG0387|consen 543 KKQGDRVLLFSQSRQMLDILESFLRR--AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANR 620 (923)
T ss_pred hhCCCEEEEehhHHHHHHHHHHHHHh--cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCce
Confidence 567999999999999999999985 345888999999999999999999998754 3 4688899999999999999
Q ss_pred EEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 446 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 446 VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
||+||+.|++..-.|+.-|+=|.|+...|++|
T Consensus 621 VIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 621 VIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred EEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99999999999999999999999987766666
No 137
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=8.6e-16 Score=148.22 Aligned_cols=332 Identities=19% Similarity=0.231 Sum_probs=196.0
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
++.|.+.| .++..-+.+++..--.-+.++.+.+. ...+++-+++.|.||||||...--..+......
T Consensus 24 ~Npf~~~p------~s~rY~~ilk~R~~LPvw~~k~~F~~----~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--- 90 (699)
T KOG0925|consen 24 INPFNGKP------YSQRYYDILKKRRELPVWEQKEEFLK----LLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--- 90 (699)
T ss_pred cCCCCCCc------CcHHHHHHHHHHhcCchHHhHHHHHH----HHhcCceEEEEecCCCCccccCcHHHHHHHHhh---
Confidence 66777777 67777777776432223333333333 233578899999999999985333233333322
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
...+..--|.+.-|-+++.+ +.+. .++.++.-+|..-.
T Consensus 91 ~~~v~CTQprrvaamsva~R--------------------------------------VadE----MDv~lG~EVGysIr 128 (699)
T KOG0925|consen 91 LTGVACTQPRRVAAMSVAQR--------------------------------------VADE----MDVTLGEEVGYSIR 128 (699)
T ss_pred ccceeecCchHHHHHHHHHH--------------------------------------HHHH----hccccchhcccccc
Confidence 12356666888888775333 2222 13333333333221
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
.+... ..+.-+-+||.++|+.-..+. -.+..+++||+||||.=. --.+.+..+
T Consensus 129 fEdC~-----------------------~~~T~Lky~tDgmLlrEams~--p~l~~y~viiLDeahERt--lATDiLmGl 181 (699)
T KOG0925|consen 129 FEDCT-----------------------SPNTLLKYCTDGMLLREAMSD--PLLGRYGVIILDEAHERT--LATDILMGL 181 (699)
T ss_pred ccccC-----------------------ChhHHHHHhcchHHHHHHhhC--cccccccEEEechhhhhh--HHHHHHHHH
Confidence 11100 011123367777776655542 347889999999999521 112334444
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 340 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (520)
++.....+ +..++|++|||+ ....+...+.+-|.+...+ ..
T Consensus 182 lk~v~~~r-----------------------------------pdLk~vvmSatl--~a~Kfq~yf~n~Pll~vpg--~~ 222 (699)
T KOG0925|consen 182 LKEVVRNR-----------------------------------PDLKLVVMSATL--DAEKFQRYFGNAPLLAVPG--TH 222 (699)
T ss_pred HHHHHhhC-----------------------------------CCceEEEeeccc--chHHHHHHhCCCCeeecCC--CC
Confidence 44333211 356799999997 3444544444445443222 11
Q ss_pred cCccccchhhhhccCCCcHH----HHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcC------CCceeEEEeccccCH
Q 010028 341 KLPERLESYKLICESKLKPL----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG------ELRIKIKEYSGLQRQ 410 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~k~~----~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~------~~~~~v~~~~~~~~~ 410 (520)
. . +.++.-......++ .+.++......+-+|||..+.++.+..++.+...+ ...+++..+| +
T Consensus 223 P--v--Ei~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P 294 (699)
T KOG0925|consen 223 P--V--EIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----P 294 (699)
T ss_pred c--e--EEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----c
Confidence 1 1 11222222222222 23333334467889999999999988888876421 1235677777 4
Q ss_pred HHHHHHHHHHHc---C--CceEEEEecccccCCCCCCCcEEEEcc------------------CCCCHHHHHHHHhhccc
Q 010028 411 SVRSKTLKAFRE---G--KIQVLVSSDAMTRGMDVEGVNNVVNYD------------------KPAYIKTYIHRAGRTAR 467 (520)
Q Consensus 411 ~~r~~~~~~f~~---g--~~~vLv~T~~~~~Gidl~~~~~VI~~~------------------~p~s~~~~~Q~~GR~~R 467 (520)
.+...+++.... | ..+|+|+|++.+..+.++++.+||.-+ .|.|..+-.||.||+||
T Consensus 295 ~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr 374 (699)
T KOG0925|consen 295 AQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 374 (699)
T ss_pred hhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccC
Confidence 444444443322 2 368999999999999999999999754 45677788999999999
Q ss_pred CCCCCcEEEEEecch
Q 010028 468 AGQLGRCFTLLHKDE 482 (520)
Q Consensus 468 ~~~~g~~i~~~~~~~ 482 (520)
.. +|+|+.++.++-
T Consensus 375 t~-pGkcfrLYte~~ 388 (699)
T KOG0925|consen 375 TR-PGKCFRLYTEEA 388 (699)
T ss_pred CC-CCceEEeecHHh
Confidence 85 999999988643
No 138
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=1.2e-15 Score=149.59 Aligned_cols=278 Identities=22% Similarity=0.267 Sum_probs=177.7
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhc
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFI 151 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (520)
++-+|||.||||.- +++++... .+-++..|-+-||..+|+.+.+.
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~a----ksGvycGPLrLLA~EV~~r~na~--------------------------- 238 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSA----KSGVYCGPLRLLAHEVYDRLNAL--------------------------- 238 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhh----ccceecchHHHHHHHHHHHhhhc---------------------------
Confidence 45589999999964 56766654 36899999999999966654333
Q ss_pred cchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC
Q 010028 152 SLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 231 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~ 231 (520)
++.+.+++|.......- ....++.+-||-++. .-
T Consensus 239 ----------------gipCdL~TGeE~~~~~~-----------------------~~~~a~hvScTVEM~----sv--- 272 (700)
T KOG0953|consen 239 ----------------GIPCDLLTGEERRFVLD-----------------------NGNPAQHVSCTVEMV----SV--- 272 (700)
T ss_pred ----------------CCCccccccceeeecCC-----------------------CCCcccceEEEEEEe----ec---
Confidence 77888888864422220 112457777886653 11
Q ss_pred cccccccEEEeehHHHHHHHHhh-hhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheee
Q 010028 232 FTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 310 (520)
Q Consensus 232 ~~~~~~~~lViDEah~l~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 310 (520)
-..+++.|+||.++|.+.+.+ .|.+.++...... |-
T Consensus 273 --~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE-----------------------------------------iH 309 (700)
T KOG0953|consen 273 --NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE-----------------------------------------IH 309 (700)
T ss_pred --CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh-----------------------------------------hh
Confidence 245789999999999776543 5666666554331 11
Q ss_pred ecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHH
Q 010028 311 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 390 (520)
Q Consensus 311 ~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~ 390 (520)
+.+- +.+-.+.+..+.. ++ +... +..| .....-.-.+.+..-+.+...+-++|-+ |++....+...
T Consensus 310 LCGe--psvldlV~~i~k~-----TG-d~ve----v~~Y-eRl~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~k 375 (700)
T KOG0953|consen 310 LCGE--PSVLDLVRKILKM-----TG-DDVE----VREY-ERLSPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKK 375 (700)
T ss_pred ccCC--chHHHHHHHHHhh-----cC-CeeE----EEee-cccCcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHH
Confidence 1111 1111122211110 00 0000 0000 0111111111333345555566666544 57788888889
Q ss_pred HhhcCCCceeEEEeccccCHHHHHHHHHHHHc--CCceEEEEecccccCCCCCCCcEEEEccCC---------CCHHHHH
Q 010028 391 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYI 459 (520)
Q Consensus 391 L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p---------~s~~~~~ 459 (520)
+...+ ..++.+++|.+++..|.+--..|.+ ++.+|||||+++.+|+|+. ++.||.++.- .+..+..
T Consensus 376 IE~~g--~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqik 452 (700)
T KOG0953|consen 376 IEKAG--NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIK 452 (700)
T ss_pred HHHhc--CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHH
Confidence 98865 3569999999999999999999988 8999999999999999998 8888887743 4577899
Q ss_pred HHHhhcccCCC---CCcEEEEEecchHHHHHHHHH
Q 010028 460 HRAGRTARAGQ---LGRCFTLLHKDEVKRFKKLLQ 491 (520)
Q Consensus 460 Q~~GR~~R~~~---~g~~i~~~~~~~~~~~~~~~~ 491 (520)
|.+||+||.|. .|.+ +=+..+|+..++++++
T Consensus 453 QIAGRAGRf~s~~~~G~v-Ttl~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 453 QIAGRAGRFGSKYPQGEV-TTLHSEDLKLLKRILK 486 (700)
T ss_pred HHhhcccccccCCcCceE-EEeeHhhHHHHHHHHh
Confidence 99999999973 3433 4455677777777765
No 139
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.67 E-value=2.2e-15 Score=153.25 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC-c-eEEEEe
Q 010028 356 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-I-QVLVSS 431 (520)
Q Consensus 356 ~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~-~-~vLv~T 431 (520)
..|...|..++.+. .+.++|||...-..+..+...|+..+ ++...+.|.....+|+.++..|...+ + -.|++|
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLST 836 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLST 836 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEee
Confidence 35666777777664 56899999999999999999999766 88999999999999999999998764 3 457999
Q ss_pred cccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCc--EEEEEecch
Q 010028 432 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDE 482 (520)
Q Consensus 432 ~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~--~i~~~~~~~ 482 (520)
.+...|||+..+++||++|...++-.-.|+--|++|.|+... ++-++.++-
T Consensus 837 KAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 837 KAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred ccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999999999999999999999999999999997655 444566643
No 140
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=9.6e-16 Score=150.26 Aligned_cols=346 Identities=14% Similarity=0.079 Sum_probs=215.9
Q ss_pred HHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhh
Q 010028 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 41 ~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~ 120 (520)
..++++.......+|.+++..+- +|+++.+.-.|.+||++++.+...+-+... +....++..|+++++++..+.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~----~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--~~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFAS----EGRADGGNEARQAGKGTCPTSGSRKFQTLC--HATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhh----hcccccccchhhcCCccCcccchhhhhhcC--cccceecchhHHHHhhccCCc
Confidence 44455666788899999887654 489999999999999999988777655433 344688899999998873221
Q ss_pred hhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCC
Q 010028 121 RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 200 (520)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 200 (520)
..=. .+.+.....--|....|.+.
T Consensus 351 ~~V~-----------------------------------~~~I~~~K~A~V~~~D~~sE--------------------- 374 (1034)
T KOG4150|consen 351 QVVH-----------------------------------VEVIKARKSAYVEMSDKLSE--------------------- 374 (1034)
T ss_pred eEEE-----------------------------------EEehhhhhcceeecccCCCc---------------------
Confidence 0000 00000000011111111111
Q ss_pred chhHHHhhccCCcEEEeCchHHHHHHhcCC---CcccccccEEEeehHHHHHH---HHhhhhHHHHHHhhccCccccccc
Q 010028 201 PEDVLQELQSAVDILVATPGRLMDHINATR---GFTLEHLCYLVVDETDRLLR---EAYQAWLPTVLQLTRSDNENRFSD 274 (520)
Q Consensus 201 ~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~---~~~~~~~~~lViDEah~l~~---~~~~~~l~~i~~~~~~~~~~~~~~ 274 (520)
.+.+-..+-+.+++++.|+........+. ...+-...++++||+|...- ......++.+..++..-..
T Consensus 375 -~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~----- 448 (1034)
T KOG4150|consen 375 -TTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEA----- 448 (1034)
T ss_pred -hhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHh-----
Confidence 11122344577899999998866554322 12234456899999995421 1223444555554443110
Q ss_pred ccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhccc-CCceeeecccccccCccccchhhhhc
Q 010028 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-HHPLFLTTGETRYKLPERLESYKLIC 353 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
..+.+++-.++|+............ ..-..+..... |..-.++.+.-
T Consensus 449 ----------------------------~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS----Ps~~K~~V~WN 496 (1034)
T KOG4150|consen 449 ----------------------------SINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS----PSSEKLFVLWN 496 (1034)
T ss_pred ----------------------------hcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC----CCccceEEEeC
Confidence 1244677788888655444443322 22222222211 11111111111
Q ss_pred ---------cCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcC----C-CceeEEEeccccCHHHHHHHH
Q 010028 354 ---------ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFG----E-LRIKIKEYSGLQRQSVRSKTL 417 (520)
Q Consensus 354 ---------~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~----~-~~~~v~~~~~~~~~~~r~~~~ 417 (520)
....+......++.+. .+-++|-||++++.|+.+....++.. . +-..+..+.|+....+|+++.
T Consensus 497 P~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE 576 (1034)
T KOG4150|consen 497 PSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIE 576 (1034)
T ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHH
Confidence 1122333333344432 46689999999999998877766531 1 111245577899999999999
Q ss_pred HHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHH
Q 010028 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486 (520)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~ 486 (520)
.+.=-|+..=+|+|++++-|||+.+++.|+..++|.|...+.|..||+||.+++...+++.....+.++
T Consensus 577 ~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~ 645 (1034)
T KOG4150|consen 577 SDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQY 645 (1034)
T ss_pred HHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhH
Confidence 999999999999999999999999999999999999999999999999999988887777766555443
No 141
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.65 E-value=3.7e-14 Score=140.69 Aligned_cols=355 Identities=15% Similarity=0.132 Sum_probs=223.0
Q ss_pred hhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhh-hHHhh-------hcccchhccchhhHHHHhhhccc
Q 010028 95 SNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSI-AEMCV-------QFDSLLFISLPQVKDVFAAIAPA 166 (520)
Q Consensus 95 ~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 166 (520)
..++.-.++||||+|++..|.++++.+.++++.. ....-..++ +++.. ..+.......|.-...+-.....
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~-~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~D 109 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPG-KQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNND 109 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCcc
Confidence 3444556899999999999999999999988775 111112222 22210 00000001111111111111111
Q ss_pred ccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcC----CC-cccccccEEE
Q 010028 167 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RG-FTLEHLCYLV 241 (520)
Q Consensus 167 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~----~~-~~~~~~~~lV 241 (520)
..+++++.....+.. . ..-....||+|++|=.|...+... .. .-++++.++|
T Consensus 110 D~FrlGik~trk~ik----L-------------------ys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~i 166 (442)
T PF06862_consen 110 DCFRLGIKFTRKSIK----L-------------------YSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLI 166 (442)
T ss_pred ceEEEeEEEecCeee----e-------------------ecccccCCEEEEChHHHHHHhccccccccccchhheeeeEe
Confidence 223443333211100 0 011235799999999998888742 11 2289999999
Q ss_pred eehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchh
Q 010028 242 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 321 (520)
Q Consensus 242 iDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 321 (520)
+|.||.+ .++.++++..+++.+...............+.|+- ......-+|.|++|+...+.+..
T Consensus 167 iD~ad~l-~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~L--------------dg~a~~~RQtii~S~~~~pe~~s 231 (442)
T PF06862_consen 167 IDQADVL-LMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYL--------------DGQAKYYRQTIIFSSFQTPEINS 231 (442)
T ss_pred echhhHH-HHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH--------------cCcchheeEeEEecCCCCHHHHH
Confidence 9999986 46778899999998887655433222222222221 12222345899999998887777
Q ss_pred hhhcccCCcee-eecc--cc----cccCccccchhhhhcc-------CCCcHHHHHH-H---HH-hcCCCcEEEEecCHH
Q 010028 322 LAQLDLHHPLF-LTTG--ET----RYKLPERLESYKLICE-------SKLKPLYLVA-L---LQ-SLGEEKCIVFTSSVE 382 (520)
Q Consensus 322 ~~~~~l~~~~~-~~~~--~~----~~~~~~~~~~~~~~~~-------~~~k~~~l~~-~---~~-~~~~~k~lIf~~s~~ 382 (520)
+....+.+... +... .. -..+...+.+.+...+ .+.++++... + +. ....+++|||++|.-
T Consensus 232 lf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYf 311 (442)
T PF06862_consen 232 LFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYF 311 (442)
T ss_pred HHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchh
Confidence 66654443211 1111 11 0122223333332211 2334443322 2 22 345678999999999
Q ss_pred HHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccc--cCCCCCCCcEEEEccCCCCHHHHHH
Q 010028 383 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIKTYIH 460 (520)
Q Consensus 383 ~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~--~Gidl~~~~~VI~~~~p~s~~~~~Q 460 (520)
+--++.++|+... .....++...+..+..+....|..|+.++|+.|.-+- +-..+.++.+||.|++|..+.-|..
T Consensus 312 DfVRlRN~lk~~~---~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~E 388 (442)
T PF06862_consen 312 DFVRLRNYLKKEN---ISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSE 388 (442)
T ss_pred hhHHHHHHHHhcC---CeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHH
Confidence 9999999999644 7788899999999999999999999999999998744 6788999999999999999998888
Q ss_pred HHhhcccCCC------CCcEEEEEecchHHHHHHHHH
Q 010028 461 RAGRTARAGQ------LGRCFTLLHKDEVKRFKKLLQ 491 (520)
Q Consensus 461 ~~GR~~R~~~------~g~~i~~~~~~~~~~~~~~~~ 491 (520)
.++-.+.... ...|.+++++.|.-++++++-
T Consensus 389 l~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 389 LLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred HHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 7765544432 578999999999999988864
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.65 E-value=4e-16 Score=119.79 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=72.5
Q ss_pred HHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCC
Q 010028 390 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 469 (520)
Q Consensus 390 ~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~ 469 (520)
+|+..+ +.+..+||+++..+|..+++.|++++..|||+|+++++|+|+|.+++||++++|+|...|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455444 89999999999999999999999999999999999999999999999999999999999999999999976
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.3e-14 Score=151.98 Aligned_cols=167 Identities=16% Similarity=0.169 Sum_probs=112.1
Q ss_pred heeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHH
Q 010028 307 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVEST 384 (520)
Q Consensus 307 ~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~ 384 (520)
++-+||+|.......+.. .++-.++.+....+........ .+......|...++..+... .+.++||.|.|++..
T Consensus 363 kLsGMTGTA~te~~Ef~~--iY~l~Vv~IPTnkP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~S 439 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFID--IYNMRVNVVPTNKPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDS 439 (925)
T ss_pred hhhccCCCCHHHHHHHHH--HhCCCEEECCCCCCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 366777776543333433 2233333333333222111111 23334456666666655543 677899999999999
Q ss_pred HHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC-CceEEEEecccccCCCCCCCc--------EEEEccCCCCH
Q 010028 385 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVN--------NVVNYDKPAYI 455 (520)
Q Consensus 385 ~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidl~~~~--------~VI~~~~p~s~ 455 (520)
+.++..|...+ +...++++.....|-.-+ . .+| ...|.|||+++.||.|+.--. +||....|.|.
T Consensus 440 E~ls~~L~~~g---i~h~vLNAk~~e~EA~II--a-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSr 513 (925)
T PRK12903 440 ETLHELLLEAN---IPHTVLNAKQNAREAEII--A-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESR 513 (925)
T ss_pred HHHHHHHHHCC---CCceeecccchhhHHHHH--H-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchH
Confidence 99999999876 666777776443333222 2 446 457999999999999998322 78889999999
Q ss_pred HHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 456 KTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 456 ~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
.--.|..||+||.|.+|.+-.|++-.|
T Consensus 514 RIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 514 RIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHHHhcccccCCCCCcceEEEecch
Confidence 999999999999999999888877543
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.64 E-value=2.2e-14 Score=151.12 Aligned_cols=131 Identities=24% Similarity=0.285 Sum_probs=93.2
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|+ .|++.|.-. .+.-.+..+..+.||.|||+++.+|++-+.+ .|..|.|++++..||.+
T Consensus 73 lG~-r~ydvQlig------~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL----~G~~VhVvT~NdyLA~R--------- 132 (870)
T CHL00122 73 LGL-RHFDVQLIG------GLVLNDGKIAEMKTGEGKTLVATLPAYLNAL----TGKGVHIVTVNDYLAKR--------- 132 (870)
T ss_pred hCC-CCCchHhhh------hHhhcCCccccccCCCCchHHHHHHHHHHHh----cCCceEEEeCCHHHHHH---------
Confidence 355 677778533 2222566888999999999999988864443 34579999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
-..++..+....|+.+++..++.+...+...+
T Consensus 133 ------------------------------D~e~m~pvy~~LGLsvg~i~~~~~~~err~aY------------------ 164 (870)
T CHL00122 133 ------------------------------DQEWMGQIYRFLGLTVGLIQEGMSSEERKKNY------------------ 164 (870)
T ss_pred ------------------------------HHHHHHHHHHHcCCceeeeCCCCChHHHHHhc------------------
Confidence 45556666667789999998887776665543
Q ss_pred HhhccCCcEEEeCchHH-HHHHhcCC-----CcccccccEEEeehHHHHH
Q 010028 206 QELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLL 249 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~~lViDEah~l~ 249 (520)
.+||+++|...+ .+.|+.+- ..-...+.++||||+|.++
T Consensus 165 -----~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 165 -----LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred -----CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 469999998755 33333221 1124668899999999763
No 145
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.62 E-value=5e-14 Score=136.45 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=92.2
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC-CceE-EEEecccccCCCCCCCcEEE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVV 447 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~~Gidl~~~~~VI 447 (520)
++.|.+|||.+....+.+...+.+.+ .....+.|..++.+|..+.+.|+.+ +..| +++..++..|+++...+.||
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~---vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VV 567 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRK---VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVV 567 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcC---CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEE
Confidence 55689999999999999999998776 7788899999999999999999975 4555 46677889999999999999
Q ss_pred EccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 448 NYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 448 ~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
...+++++.-++|+=-|++|.|+...+.+.
T Consensus 568 FaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 568 FAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred EEEecCCCceEEechhhhhhccccceeeEE
Confidence 999999999999999999999987665544
No 146
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.59 E-value=7.3e-14 Score=147.98 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred cCCCcHHHHHHHHHhc----------------CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHH
Q 010028 354 ESKLKPLYLVALLQSL----------------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 417 (520)
Q Consensus 354 ~~~~k~~~l~~~~~~~----------------~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~ 417 (520)
...+|...|..++... .+.++||||.-...+..+.+.|-...-+...-..+.|..++..|.++.
T Consensus 1307 ~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV 1386 (1549)
T KOG0392|consen 1307 QHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIV 1386 (1549)
T ss_pred hhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHH
Confidence 3467778888887654 235899999999999999988865433444555789999999999999
Q ss_pred HHHHcC-CceEE-EEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 418 KAFREG-KIQVL-VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 418 ~~f~~g-~~~vL-v~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
++|.++ .++|| ++|.+..-|+|+.+++.||.+...|++..-.|+.-||+|.|+...|=+|
T Consensus 1387 ~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1387 ERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred HHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 999998 67876 6678999999999999999999999999999999999999976544333
No 147
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=8.2e-15 Score=132.57 Aligned_cols=65 Identities=32% Similarity=0.358 Sum_probs=51.1
Q ss_pred CcchhhHHHHHhhhCCCCC---CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 50 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~---~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
.|+++|.+|+..+...+.. .+.+++.+|||+|||.+++..+.. +.. ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~-l~~------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILE-LAR------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHH-HHC------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhc-ccc------ceeEecCHHHHHHHHHHHH
Confidence 6899999999998864433 478999999999999987654443 322 7999999999999965554
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=7.3e-13 Score=139.52 Aligned_cols=127 Identities=28% Similarity=0.308 Sum_probs=90.5
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.|++.|. +..+.-..--+..+.||-|||+++.+|++-+.+. |..|.|++++..||..
T Consensus 85 r~ydVQl------iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~----GkgVhVVTvNdYLA~R------------- 141 (939)
T PRK12902 85 RHFDVQL------IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT----GKGVHVVTVNDYLARR------------- 141 (939)
T ss_pred CcchhHH------HhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc----CCCeEEEeCCHHHHHh-------------
Confidence 6666664 2222225566889999999999999888765554 4469999999999999
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
-..++..+....++.|++..++.+...+...
T Consensus 142 --------------------------Dae~m~~vy~~LGLtvg~i~~~~~~~err~a----------------------- 172 (939)
T PRK12902 142 --------------------------DAEWMGQVHRFLGLSVGLIQQDMSPEERKKN----------------------- 172 (939)
T ss_pred --------------------------HHHHHHHHHHHhCCeEEEECCCCChHHHHHh-----------------------
Confidence 4455666666679999998887765555433
Q ss_pred cCCcEEEeCchHH-HHHHhc-----CCCcccccccEEEeehHHHH
Q 010028 210 SAVDILVATPGRL-MDHINA-----TRGFTLEHLCYLVVDETDRL 248 (520)
Q Consensus 210 ~~~~Ili~Tp~~l-~~~l~~-----~~~~~~~~~~~lViDEah~l 248 (520)
..+||++||+..| .+.|.. ....-...+.+.||||+|.+
T Consensus 173 Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 173 YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 3679999999876 333322 11123567889999999975
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.55 E-value=6.9e-13 Score=141.75 Aligned_cols=110 Identities=14% Similarity=0.219 Sum_probs=78.6
Q ss_pred EEEEecCHHHHHHHHHHHhhcCC---CceeEEEeccccCHHHHHHHHHHH----------------------Hc----CC
Q 010028 374 CIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GK 424 (520)
Q Consensus 374 ~lIf~~s~~~~~~l~~~L~~~~~---~~~~v~~~~~~~~~~~r~~~~~~f----------------------~~----g~ 424 (520)
.+|-+++++.+-.++..|-.... ....+.+||+......|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 68889999999999988876532 235577899998777776655443 12 35
Q ss_pred ceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCC--CcEEEEEecchHHHH
Q 010028 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRF 486 (520)
Q Consensus 425 ~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~--g~~i~~~~~~~~~~~ 486 (520)
..|+|+|++++.|+|+. .+.+|. -|.+.+..+|++||+.|.+.. +..=+++...+.+.+
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 68999999999999988 565443 345689999999999998842 222234445555555
No 150
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.52 E-value=3.5e-13 Score=115.83 Aligned_cols=120 Identities=39% Similarity=0.657 Sum_probs=83.9
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccch
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLL 149 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (520)
+.+++.+|||+|||.+++..+.+..... ...++++++|++.++.|+.+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~------------------------------ 48 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAE------------------------------ 48 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHH------------------------------
Confidence 4689999999999999887777655542 45689999999999999433
Q ss_pred hccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcC
Q 010028 150 FISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~ 229 (520)
.+..+... +..+....+........ .......+|+++|++.+...+...
T Consensus 49 ---------~~~~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~~~~~~i~i~t~~~~~~~~~~~ 97 (144)
T cd00046 49 ---------RLKELFGE-GIKVGYLIGGTSIKQQE---------------------KLLSGKTDIVVGTPGRLLDELERL 97 (144)
T ss_pred ---------HHHHHhhC-CcEEEEEecCcchhHHH---------------------HHhcCCCCEEEECcHHHHHHHHcC
Confidence 34433332 45566666554433322 123356799999999988777653
Q ss_pred CCcccccccEEEeehHHHHHHHHh
Q 010028 230 RGFTLEHLCYLVVDETDRLLREAY 253 (520)
Q Consensus 230 ~~~~~~~~~~lViDEah~l~~~~~ 253 (520)
. .....++++|+||+|.+.....
T Consensus 98 ~-~~~~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 98 K-LSLKKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred C-cchhcCCEEEEeCHHHHhhcch
Confidence 3 3345688999999999865543
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.49 E-value=1.2e-13 Score=106.99 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=74.6
Q ss_pred HHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhc
Q 010028 386 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 465 (520)
Q Consensus 386 ~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~ 465 (520)
.+++.|+..+ +.+..+||.++..+|..+++.|+++...+|++|+++++|+|+|+++.||.+++|.+...|.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 3556666554 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 010028 466 ARAG 469 (520)
Q Consensus 466 ~R~~ 469 (520)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.47 E-value=2.3e-12 Score=136.41 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=73.7
Q ss_pred EEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhcc
Q 010028 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFIS 152 (520)
Q Consensus 73 li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (520)
+..+.+|||||.+|+-.+.+.+. .|.++|+|+|...|+.|+.+.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~----~Gk~vLvLvPEi~lt~q~~~r-------------------------------- 207 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR----AGRGALVVVPDQRDVDRLEAA-------------------------------- 207 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH----cCCeEEEEecchhhHHHHHHH--------------------------------
Confidence 33444699999999765544443 245799999999999995333
Q ss_pred chhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCc
Q 010028 153 LPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 232 (520)
+..... +..+..++++.+..++...|.+ .......|+|||-.. -..
T Consensus 208 -------l~~~f~--~~~v~~lhS~l~~~~R~~~w~~-----------------~~~G~~~IViGtRSA--------vFa 253 (665)
T PRK14873 208 -------LRALLG--AGDVAVLSAGLGPADRYRRWLA-----------------VLRGQARVVVGTRSA--------VFA 253 (665)
T ss_pred -------HHHHcC--CCcEEEECCCCCHHHHHHHHHH-----------------HhCCCCcEEEEccee--------EEe
Confidence 332221 2458889999888888766543 334558999999332 235
Q ss_pred ccccccEEEeehHHH
Q 010028 233 TLEHLCYLVVDETDR 247 (520)
Q Consensus 233 ~~~~~~~lViDEah~ 247 (520)
.++++++|||||-|.
T Consensus 254 P~~~LgLIIvdEEhd 268 (665)
T PRK14873 254 PVEDLGLVAIWDDGD 268 (665)
T ss_pred ccCCCCEEEEEcCCc
Confidence 688899999999994
No 153
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.46 E-value=2e-13 Score=131.56 Aligned_cols=79 Identities=19% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc--ccccEEEEcCCHHHHHhHHhhhhc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~--~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
|.| .|++.|.+.+..+...+.++.++++.||||+|||++++.|++..+...+. ++.+++++++|..+.+|...++++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 345 57999999988888888788999999999999999999999887665422 234899999999999998888887
Q ss_pred cc
Q 010028 124 YC 125 (520)
Q Consensus 124 ~~ 125 (520)
..
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 64
No 154
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.46 E-value=2e-13 Score=131.56 Aligned_cols=79 Identities=19% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc--ccccEEEEcCCHHHHHhHHhhhhc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~--~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
|.| .|++.|.+.+..+...+.++.++++.||||+|||++++.|++..+...+. ++.+++++++|..+.+|...++++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 345 57999999988888888788999999999999999999999887665422 234899999999999998888887
Q ss_pred cc
Q 010028 124 YC 125 (520)
Q Consensus 124 ~~ 125 (520)
..
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 64
No 155
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.46 E-value=5.6e-13 Score=139.24 Aligned_cols=361 Identities=17% Similarity=0.169 Sum_probs=216.1
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
-.++.+||.+-++.......++-+.++...+|.|||... +.++..++..+...+..+|++|+-.|..
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~~GP~LvivPlstL~N------------ 458 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQMQGPFLIIVPLSTLVN------------ 458 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcccCCCeEEeccccccCC------------
Confidence 358999999999988877766678999999999999976 4566677766656667999999988875
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
|...+..|.+. +......|.......+.. ..
T Consensus 459 ----------------------------W~~Ef~kWaPS--v~~i~YkGtp~~R~~l~~-------------------qi 489 (1157)
T KOG0386|consen 459 ----------------------------WSSEFPKWAPS--VQKIQYKGTPQQRSGLTK-------------------QQ 489 (1157)
T ss_pred ----------------------------chhhccccccc--eeeeeeeCCHHHHhhHHH-------------------HH
Confidence 55566677653 444444443222211111 11
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH----------h-------------hhhHHHHHHhh
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA----------Y-------------QAWLPTVLQLT 264 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~----------~-------------~~~l~~i~~~~ 264 (520)
.....+|+++|++.+.. ....+.--+..++||||.|+|.+.. | ...+.++-.++
T Consensus 490 r~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLL 566 (1157)
T KOG0386|consen 490 RHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALL 566 (1157)
T ss_pred hcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHH
Confidence 22568999999888744 1011112235699999999874421 0 01111111111
Q ss_pred ccCcccccccccccccccccchh----------------------hhc-cccccc---CCCCCCccc---hheeeecccc
Q 010028 265 RSDNENRFSDASTFLPSAFGSLK----------------------TIR-RCGVER---GFKDKPYPR---LVKMVLSATL 315 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~-~~~~~~---~~~~~~~~~---~~~i~~SaT~ 315 (520)
....++.|.+.. .+..||.... .+- .....+ ......... +...-+||--
T Consensus 567 NFlLP~IFnS~~-~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQ 645 (1157)
T KOG0386|consen 567 NFLLPNIFNSCK-AFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQ 645 (1157)
T ss_pred HHhccchhhhHh-HHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhh
Confidence 111111111110 0111111000 000 000000 000000000 0001112110
Q ss_pred -------------c-------------CCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc
Q 010028 316 -------------T-------------QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 369 (520)
Q Consensus 316 -------------~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~ 369 (520)
. .+..-..+..+.+|..+.-........... ........|++.+..++..+
T Consensus 646 q~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~---~dL~R~sGKfELLDRiLPKL 722 (1157)
T KOG0386|consen 646 QSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI---KDLVRVSGKFELLDRILPKL 722 (1157)
T ss_pred HhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh---hHHHHhccHHHHHHhhhHHH
Confidence 0 011112334445555442222221111111 23344577888888888765
Q ss_pred --CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC---ceEEEEecccccCCCCCCCc
Q 010028 370 --GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVN 444 (520)
Q Consensus 370 --~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~---~~vLv~T~~~~~Gidl~~~~ 444 (520)
.+.++|.||.--.-...+..+|.-.. ++-..+.|.....+|...++.|..-. ...|++|.+...|+|+.-++
T Consensus 723 katgHRVLlF~qMTrlmdimEdyL~~~~---~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtad 799 (1157)
T KOG0386|consen 723 KATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTAD 799 (1157)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhhh---hheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcc
Confidence 67899999987777777788887544 78889999999999999999998743 34678999999999999999
Q ss_pred EEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 445 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 445 ~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
.||++|..+++..+.|+--|+.|.|+...|-++...
T Consensus 800 tviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 800 TVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred eEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 999999999999999999999999987777666443
No 156
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=8.3e-12 Score=122.24 Aligned_cols=397 Identities=17% Similarity=0.175 Sum_probs=229.3
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEE-ECCCCChh--hHHhHHHHHHHHhhh---------------------------c
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCI-NSPTGSGK--TLSYALPIVQTLSNR---------------------------A 98 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li-~apTGsGK--T~~~ll~il~~l~~~---------------------------~ 98 (520)
..+++.|.+.... +.+.+|++. ....+.|+ +-+|.+.+++++.+. +
T Consensus 215 ~pltalQ~~L~~~----m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 215 EPLTALQKELFKI----MFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred CcchHHHHHHHHH----HHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 4789999886543 335788874 22223455 345777788877322 1
Q ss_pred cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhc-----cchhhHHHHhhhcccccceEEe
Q 010028 99 VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFI-----SLPQVKDVFAAIAPAVGLSVGL 173 (520)
Q Consensus 99 ~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~ 173 (520)
...++||||+|+++.|..+.+.+..++.+...+-+.+..-..+-.+|..-.+. ..|.-.+.+-.......+++++
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 13468999999999999999998888655443222211111111111110000 1111111111110001111111
Q ss_pred ccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC----c-ccccccEEEeehHHHH
Q 010028 174 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----F-TLEHLCYLVVDETDRL 248 (520)
Q Consensus 174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~----~-~~~~~~~lViDEah~l 248 (520)
. .....-. ........||+||+|-.|..++...+. + -++++.++|||.||.+
T Consensus 371 ~-----ftkKtik------------------Lys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~ 427 (698)
T KOG2340|consen 371 A-----FTKKTIK------------------LYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIM 427 (698)
T ss_pred H-----HHHHHHH------------------HHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHH
Confidence 1 0111111 112234679999999999888874222 2 2788999999999987
Q ss_pred HHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccC
Q 010028 249 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 328 (520)
Q Consensus 249 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~ 328 (520)
+. +.++.+..++.++...............+.|+- ..+...-.|.+++|+-..+.+..+....+.
T Consensus 428 l~-QNwEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL--------------~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~ 492 (698)
T KOG2340|consen 428 LM-QNWEHLLHIFDHLNLQPSKQHDVDFSRVRMWYL--------------DGQSRYFRQTLLFSRYSHPLFNSLFNQYCQ 492 (698)
T ss_pred HH-hhHHHHHHHHHHhhcCcccccCCChhheehhee--------------ccHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 64 456888999998887655433332222222221 111222346777776554444433322222
Q ss_pred Cc---eeee---cccccccCccccchhh-------hhccCCCcHHHHHH-HHHhc---CCCcEEEEecCHHHHHHHHHHH
Q 010028 329 HP---LFLT---TGETRYKLPERLESYK-------LICESKLKPLYLVA-LLQSL---GEEKCIVFTSSVESTHRLCTLL 391 (520)
Q Consensus 329 ~~---~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~k~~~l~~-~~~~~---~~~k~lIf~~s~~~~~~l~~~L 391 (520)
+. +... .+..-..+...+.+.+ .......++.+... ++.+. ..+.+||+.|+.-+--++..++
T Consensus 493 N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~ 572 (698)
T KOG2340|consen 493 NMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYM 572 (698)
T ss_pred hhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHh
Confidence 11 0000 0000011111122211 11222334444332 33333 3456899999999999999999
Q ss_pred hhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccc--cCCCCCCCcEEEEccCCCCHH---HHHHHHhhcc
Q 010028 392 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIK---TYIHRAGRTA 466 (520)
Q Consensus 392 ~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~--~Gidl~~~~~VI~~~~p~s~~---~~~Q~~GR~~ 466 (520)
++.. +....+|...+...-.+..+.|-.|..++|+.|..+- +-.++.++..||.|.+|.++. +++.+.+|+.
T Consensus 573 K~e~---i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~ 649 (698)
T KOG2340|consen 573 KKEE---ISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTT 649 (698)
T ss_pred hhhh---cchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhh
Confidence 8754 5556677777777778888999999999999998754 678999999999999998876 4556667766
Q ss_pred cCCC----CCcEEEEEecchHHHHHHHH
Q 010028 467 RAGQ----LGRCFTLLHKDEVKRFKKLL 490 (520)
Q Consensus 467 R~~~----~g~~i~~~~~~~~~~~~~~~ 490 (520)
-.|+ .-.|.+++.+.|.-.+..++
T Consensus 650 ~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 650 SQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred ccCCccccceEEEEEeechhhHHHHHhh
Confidence 5443 35688999999988887765
No 157
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=2.1e-11 Score=130.07 Aligned_cols=134 Identities=18% Similarity=0.233 Sum_probs=99.3
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC-CceEEEEe
Q 010028 355 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSS 431 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T 431 (520)
...|...++..+... .+.++||-+.|++..+.+.+.|...+ +...++++.....|.+-+- .+| .-.|-|||
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g---I~H~VLNAK~h~~EAeIVA---~AG~~GaVTIAT 683 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK---IPHNVLNAKLHQKEAEIVA---EAGQPGTVTIAT 683 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC---CcHHHhhccchhhHHHHHH---hcCCCCcEEEec
Confidence 345666666655543 67789999999999999999999876 5555666654433332222 234 34788999
Q ss_pred cccccCCCCC--------CCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecc-hH------HHHHHHHHHhc
Q 010028 432 DAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EV------KRFKKLLQKAD 494 (520)
Q Consensus 432 ~~~~~Gidl~--------~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~~------~~~~~~~~~~~ 494 (520)
++..||-|+. +--+||-...+.|..--.|..||+||.|.+|.+-.|++=+ ++ +++.++++.+.
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g 761 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMG 761 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcC
Confidence 9999999998 4456888889999999999999999999999988887754 33 34556666554
No 158
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.38 E-value=1.5e-11 Score=123.91 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=102.3
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCce-EEEEec
Q 010028 356 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ-VLVSSD 432 (520)
Q Consensus 356 ~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~-vLv~T~ 432 (520)
..|+..|.+++..+ .+.++|+|+.--+....+.++|...+ +....+.|......|..++.+|+..++- .|++|.
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTR 1103 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTR 1103 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEecc
Confidence 44555566666654 56789999999999999999998776 8888999999999999999999987665 468999
Q ss_pred ccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 433 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 433 ~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
+..-||++...+.||.|+..|++..-.|+..|+.|.|++..+.++
T Consensus 1104 AGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1104 AGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred cCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 999999999999999999999999999999999999987654444
No 159
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.35 E-value=1.6e-10 Score=122.12 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC--ceEEEEe
Q 010028 356 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSS 431 (520)
Q Consensus 356 ~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T 431 (520)
..|+..|..+++++ .+.++|||+.-.+.+..+...|+.+| +--..+.|.....+|+.++++|+.+. ...|++|
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILST 1335 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILST 1335 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEec
Confidence 45666677777765 67799999999999999999999776 78888999999999999999999865 3568999
Q ss_pred cccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 432 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 432 ~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
.....|||+-+.+.||+||..|++.--.|.--|+.|.|+...+.+|-.-
T Consensus 1336 rSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLI 1384 (1958)
T KOG0391|consen 1336 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLI 1384 (1958)
T ss_pred cCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEee
Confidence 9999999999999999999999999999999999999987777666443
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.26 E-value=5.3e-10 Score=117.12 Aligned_cols=113 Identities=17% Similarity=0.259 Sum_probs=80.3
Q ss_pred HHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCC
Q 010028 360 LYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 438 (520)
Q Consensus 360 ~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (520)
.+...++... .++++-||++|...++.+++..+... .++..+++.....+ + +. =++++|++-|+++..|+
T Consensus 270 tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~---~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~ 340 (824)
T PF02399_consen 270 TFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT---KKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGL 340 (824)
T ss_pred hHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC---CeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEe
Confidence 3445555554 56677889999999999999888764 78888887655532 2 11 25799999999999999
Q ss_pred CCCC--CcEEEEccCC----CCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 439 DVEG--VNNVVNYDKP----AYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 439 dl~~--~~~VI~~~~p----~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
++.. .+-+.-|--| .+..+..|++||+-... ..+.+++++...
T Consensus 341 Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~~ 389 (824)
T PF02399_consen 341 SFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDASG 389 (824)
T ss_pred ccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEeccc
Confidence 9985 3435545223 23557899999976554 778888877643
No 161
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.24 E-value=4.5e-10 Score=109.32 Aligned_cols=123 Identities=22% Similarity=0.168 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHhc----CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC-CceE-EEE
Q 010028 357 LKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVS 430 (520)
Q Consensus 357 ~k~~~l~~~~~~~----~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~v-Lv~ 430 (520)
.|++.|.+.+.-. ..-|.|||...-+.+..+.-.|...| +...-+.|.|++..|...++.|.+. ...| |++
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvS 696 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVS 696 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEE
Confidence 4555555544332 33478999998888888888888766 8888999999999999999999885 4555 455
Q ss_pred ecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCC--CCcEEEEEecch
Q 010028 431 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDE 482 (520)
Q Consensus 431 T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~~ 482 (520)
-.+....+|+...++|+++|+=|++.--.|.--|..|.|+ +-+++.|+..+.
T Consensus 697 LkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 697 LKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred eccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 6777788999999999999999999999999999999985 566777766643
No 162
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.23 E-value=1.1e-09 Score=110.91 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=95.8
Q ss_pred CCcHHHHHHHHH---hcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHc--CCceE-EE
Q 010028 356 KLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQV-LV 429 (520)
Q Consensus 356 ~~k~~~l~~~~~---~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~v-Lv 429 (520)
..|+..++..++ .....+++|...-.+.+..++..+...| +....+||....++|..+++.|.. |..+| |+
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLl 804 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLL 804 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEEE
Confidence 344444444443 3366788888887788888888888766 888899999999999999999976 43455 46
Q ss_pred EecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
+-.+...|+|+-+.+|+|.+|+.|++..-.|++-|.-|.|+...+++.
T Consensus 805 SLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 805 SLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 667788999999999999999999999999999999999987766654
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.18 E-value=2.9e-10 Score=94.52 Aligned_cols=50 Identities=32% Similarity=0.336 Sum_probs=34.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
|+--+|...+|+|||.-.+--+++...+ ++.++|+|.||+.+++.+++.+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL 53 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEAL 53 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHT
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHH
Confidence 5556889999999999765555554443 4678999999999999955544
No 164
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.10 E-value=5.1e-09 Score=109.23 Aligned_cols=197 Identities=17% Similarity=0.143 Sum_probs=119.5
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc---------------------------
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--------------------------- 98 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~--------------------------- 98 (520)
|.| .|++.|...+..++.......+.++..|||+|||++.+-..++......
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 445 8999999999998887766788999999999999987665555431110
Q ss_pred -----------cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc
Q 010028 99 -----------VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV 167 (520)
Q Consensus 99 -----------~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (520)
...+++.+-+-|+....|+.+++++..-. ..-.+..+.+.+|-+=+--...+.......+.......
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~ 174 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSR 174 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccc
Confidence 01356888889999899999999885433 33344555566665532222222222234444433322
Q ss_pred cceEEeccCccch-------HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCC-CcccccccE
Q 010028 168 GLSVGLAVGQSSI-------ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCY 239 (520)
Q Consensus 168 ~~~v~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~~~~~~~ 239 (520)
.+.+...+...+. --+++.+.+... ...-+++....++...++|++|-+..|.+-..+.. ..++++ ..
T Consensus 175 ~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk---~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sI 250 (945)
T KOG1132|consen 175 SCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGK---KSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SI 250 (945)
T ss_pred cccccccccccccccccCCCcccHHHHHHhCc---cCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cE
Confidence 2222222211111 111222222111 12245777778888999999999999877665533 234333 48
Q ss_pred EEeehHHHHH
Q 010028 240 LVVDETDRLL 249 (520)
Q Consensus 240 lViDEah~l~ 249 (520)
|||||||++-
T Consensus 251 VIfDEAHNiE 260 (945)
T KOG1132|consen 251 VIFDEAHNIE 260 (945)
T ss_pred EEEeccccHH
Confidence 9999999863
No 165
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.08 E-value=3.3e-09 Score=119.59 Aligned_cols=118 Identities=21% Similarity=0.220 Sum_probs=100.7
Q ss_pred CcHHHHHHHH-Hh--cCCC--cEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC--CceEEE
Q 010028 357 LKPLYLVALL-QS--LGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 429 (520)
Q Consensus 357 ~k~~~l~~~~-~~--~~~~--k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g--~~~vLv 429 (520)
.|...+..++ .. ..+. +++||++.......+...++..+ .....++|.++..+|...++.|.++ ..-+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 5666666666 33 2444 89999999999999999999865 6788999999999999999999986 345567
Q ss_pred EecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
++.+...|+|+...++||++|..+++....|+..|+.|.|+...+.++
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 788999999999999999999999999999999999999987665554
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.04 E-value=8.3e-09 Score=114.41 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=54.7
Q ss_pred HcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCC----CCcEEEEEecchHHHHHHHHHHhcCC
Q 010028 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ----LGRCFTLLHKDEVKRFKKLLQKADND 496 (520)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~----~g~~i~~~~~~~~~~~~~~~~~~~~~ 496 (520)
.....++||+++++-.|.|.|.+..+ -+|-|--.-.++|++-|++|.-. .|.++-|.. ..+.+++..+.+.+.
T Consensus 590 ~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e~l~~Al~~Y~~~ 666 (962)
T COG0610 590 KDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKEALKKALKLYSNE 666 (962)
T ss_pred cCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHHHHHHHHHHhhcc
Confidence 34678999999999999999977654 46777666789999999999652 244444433 666677777777665
Q ss_pred C
Q 010028 497 S 497 (520)
Q Consensus 497 ~ 497 (520)
.
T Consensus 667 ~ 667 (962)
T COG0610 667 G 667 (962)
T ss_pred c
Confidence 5
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.99 E-value=1.1e-09 Score=107.15 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=75.6
Q ss_pred hhHHHHHhhhCCC---------CCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc--cccEEEEcCCHHHHHhHHhhhh
Q 010028 54 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPTRDLALQVNSARC 122 (520)
Q Consensus 54 ~Q~~ai~~~~~~~---------~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~--~~~vlil~Pt~~La~q~~~~~~ 122 (520)
||.+++..++... ...+.+++...+|+|||...+. ++..+...... ..++||++|. .+..|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~~~~~~~LIv~P~-~l~~~------ 72 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQRGEKKTLIVVPS-SLLSQ------ 72 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTTSS-S-EEEEE-T-TTHHH------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccccccccceeEeecc-chhhh------
Confidence 4666666554432 2346789999999999998755 44444433211 1259999999 77788
Q ss_pred cccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCch
Q 010028 123 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 202 (520)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (520)
|...+..+......++....|.......
T Consensus 73 ---------------------------------W~~E~~~~~~~~~~~v~~~~~~~~~~~~------------------- 100 (299)
T PF00176_consen 73 ---------------------------------WKEEIEKWFDPDSLRVIIYDGDSERRRL------------------- 100 (299)
T ss_dssp ---------------------------------HHHHHHHHSGT-TS-EEEESSSCHHHHT-------------------
T ss_pred ---------------------------------hhhhhccccccccccccccccccccccc-------------------
Confidence 5556666665445677777766511111
Q ss_pred hHHHhhccCCcEEEeCchHHHHHHhcC--CCcccccccEEEeehHHHH
Q 010028 203 DVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDETDRL 248 (520)
Q Consensus 203 ~~~~~~~~~~~Ili~Tp~~l~~~l~~~--~~~~~~~~~~lViDEah~l 248 (520)
........+++|+|++.+....... ..+.--++++||+||+|.+
T Consensus 101 --~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 101 --SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp --TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGG
T ss_pred --cccccccceeeeccccccccccccccccccccccceeEEEeccccc
Confidence 0122346789999999987111000 0111234889999999987
No 168
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.95 E-value=3e-07 Score=93.80 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCC----ceeEEEeccccCHHHHHHHHHHHHc----CCceEE--EEecccccCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGEL----RIKIKEYSGLQRQSVRSKTLKAFRE----GKIQVL--VSSDAMTRGMD 439 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~----~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~vL--v~T~~~~~Gid 439 (520)
-.+.+++|++|.+-...+.+.....|.. +.+-.++....+ -+.+++.|.. |.-.+| |...-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 3478999999999999999988865521 223333333332 3556666653 454565 55688999999
Q ss_pred CCC--CcEEEEccCCCC-----------------------H---------HHHHHHHhhcccCCCCCcEEEEEecc----
Q 010028 440 VEG--VNNVVNYDKPAY-----------------------I---------KTYIHRAGRTARAGQLGRCFTLLHKD---- 481 (520)
Q Consensus 440 l~~--~~~VI~~~~p~s-----------------------~---------~~~~Q~~GR~~R~~~~g~~i~~~~~~---- 481 (520)
+.+ ++.||..++|.. . ....|.+|||.|+.++-.+|++++..
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~~p 784 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYARP 784 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhcCc
Confidence 997 777888887621 0 12239999999998887788887752
Q ss_pred hHHHHHHHHHHhcCCC
Q 010028 482 EVKRFKKLLQKADNDS 497 (520)
Q Consensus 482 ~~~~~~~~~~~~~~~~ 497 (520)
...++-+++.+.-+.+
T Consensus 785 ~~RKLp~WI~~~v~s~ 800 (821)
T KOG1133|consen 785 LSRKLPKWIRKRVHSK 800 (821)
T ss_pred hhhhccHHHHhHhccc
Confidence 2334555554444333
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.95 E-value=2.2e-08 Score=105.82 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=83.5
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 355 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
...|...++..+... .+.++||-+.+++..+.+.+.|.+.+ ++...+.......+-+.+. ..--...|-|+|+
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~---i~h~VLNAk~h~~EA~Iia--~AG~~gaVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAG---IPHNVLNAKNHAREAEIIA--QAGQPGAVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcC---CCceeeccccHHHHHHHHh--hcCCCCccccccc
Confidence 345666666555442 77899999999999999999999876 5556666665543333332 2222346789999
Q ss_pred ccccCCCCCCCc-----------EEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 433 AMTRGMDVEGVN-----------NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 433 ~~~~Gidl~~~~-----------~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
++.+|-|+.--. +||-.....|..--.|.-||+||.|-+|.+-.|++-
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 999999987222 244444555666666999999999977877666554
No 170
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.95 E-value=4.9e-08 Score=102.07 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCC-------------------CceeEEEeccccCHHHHH
Q 010028 356 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRS 414 (520)
Q Consensus 356 ~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~-------------------~~~~v~~~~~~~~~~~r~ 414 (520)
..|.-+|..+++.. -+.++|||..|...+..+..+|..... .+..-..+.|......|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 34555677777654 678999999999999999998876321 122356678899999999
Q ss_pred HHHHHHHcCC----ceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 415 KTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 415 ~~~~~f~~g~----~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
.....|.+-. .-.||+|.+.+-|||+-.++.||++|..|++.--.|.+=|+-|.|+..-|++|
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999998732 34789999999999999999999999999999999999999999988777776
No 171
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.92 E-value=1.6e-07 Score=92.50 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=58.3
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
|.+..-+|-|-+.+-++-...-.+...++.+|+|+|||.+.+.-+++.-...+....++++.+-|..=.+....+++++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 4466778888888777655544568899999999999998776666655554445667899888877777766676664
No 172
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.72 E-value=3.4e-08 Score=87.40 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC-CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec--ccccCCCCCC--Cc
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--VN 444 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~~Gidl~~--~~ 444 (520)
.++++|||++|....+.+.+.++.... .+..+..- ...++..+++.|++++..||+++. .+++|||+|+ ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 458999999999999999999986431 11222222 355788999999999999999998 9999999997 77
Q ss_pred EEEEccCCCC------------------------------HHHHHHHHhhcccCCCCCcEEEEEecc
Q 010028 445 NVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKD 481 (520)
Q Consensus 445 ~VI~~~~p~s------------------------------~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 481 (520)
.||..++|.. .....|.+||+.|..++--+++++++.
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 8998887731 113349999999988665555566553
No 173
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.71 E-value=2.7e-07 Score=86.71 Aligned_cols=131 Identities=24% Similarity=0.273 Sum_probs=89.0
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|+ .|++.|.-++-.+. +.-++...||-|||++..++++-..+. |..|-|++.+..||..
T Consensus 74 ~g~-~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~l~a~~~AL~----G~~V~vvT~NdyLA~R--------- 133 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALH------KGRLAEMKTGEGKTLIAALPAALNALQ----GKGVHVVTSNDYLAKR--------- 133 (266)
T ss_dssp TS-----HHHHHHHHHHH------TTSEEEESTTSHHHHHHHHHHHHHHTT----SS-EEEEESSHHHHHH---------
T ss_pred cCC-cccHHHHhhhhhcc------cceeEEecCCCCcHHHHHHHHHHHHHh----cCCcEEEeccHHHhhc---------
Confidence 454 89999988765442 233899999999999887776655543 4579999999999998
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
=...+..+....++.+++..++.+...+...+
T Consensus 134 ------------------------------D~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y------------------ 165 (266)
T PF07517_consen 134 ------------------------------DAEEMRPFYEFLGLSVGIITSDMSSEERREAY------------------ 165 (266)
T ss_dssp ------------------------------HHHHHHHHHHHTT--EEEEETTTEHHHHHHHH------------------
T ss_pred ------------------------------cHHHHHHHHHHhhhccccCccccCHHHHHHHH------------------
Confidence 44445666667799999999988765554443
Q ss_pred HhhccCCcEEEeCchHHH-HHHhcC----CCc-ccccccEEEeehHHHHH
Q 010028 206 QELQSAVDILVATPGRLM-DHINAT----RGF-TLEHLCYLVVDETDRLL 249 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l~-~~l~~~----~~~-~~~~~~~lViDEah~l~ 249 (520)
.++|+++|...+. +.|..+ ... -...+.++||||+|.++
T Consensus 166 -----~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 166 -----AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -----HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred -----hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 3489999998873 344321 111 14678999999999874
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.65 E-value=8.5e-07 Score=92.72 Aligned_cols=117 Identities=19% Similarity=0.305 Sum_probs=90.8
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC----CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 445 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~----~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~ 445 (520)
-.+-+++|.+.-..+..+...+.... .....+...|+.....+..++.+....|..+++++|.+.+..+.+.++..
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 45678999999999988888876532 12245667899888889999999999999999999999998888888777
Q ss_pred EEEccCC------------------CCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHH
Q 010028 446 VVNYDKP------------------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 487 (520)
Q Consensus 446 VI~~~~p------------------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~ 487 (520)
|++.+.- .|.....||.||+||.. .|.|+.+++...++.+.
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR-~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR-PGFCFHLCSRARFEALE 780 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec-ccccccccHHHHHHHHH
Confidence 7654311 24567889999999985 89999888776655543
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.57 E-value=1.2e-07 Score=89.09 Aligned_cols=69 Identities=28% Similarity=0.286 Sum_probs=49.2
Q ss_pred CcchhhHHHHHhhhCCCCCCCC-EEEECCCCChhhHHhHHHHHHHHh-----hhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 50 SLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS-----NRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~-~li~apTGsGKT~~~ll~il~~l~-----~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
++++.|.+|+..++. ... .+|+||+|||||.+... ++..+. .....+.++|+++|+..-++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468899999988776 555 89999999999976433 444441 1134677899999999999998888777
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.52 E-value=4.4e-07 Score=98.36 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=57.6
Q ss_pred CceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCC--CC--------cEEEEEecchHHHHHHHHHHh
Q 010028 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LG--------RCFTLLHKDEVKRFKKLLQKA 493 (520)
Q Consensus 424 ~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~--~g--------~~i~~~~~~~~~~~~~~~~~~ 493 (520)
..+.|++.+++.+|.|.|++-.++.+....|...-.|.+||+.|..- .| ..-++++.+.......+.+++
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 56899999999999999999999999888889999999999999531 12 133455666777778887777
Q ss_pred cCC
Q 010028 494 DND 496 (520)
Q Consensus 494 ~~~ 496 (520)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.32 E-value=2.7e-07 Score=98.05 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=94.8
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
..+|.|.+.+.+..+ ...++++-+|||+|||.++.++++..+... ++.++++++|-++|+..-
T Consensus 927 ~fn~~q~~if~~~y~---td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker------------ 989 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYH---TDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKER------------ 989 (1230)
T ss_pred ccCCccceEEEEEee---cchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhccc------------
Confidence 566677766555444 467899999999999999999887766655 567999999999998772
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
..++-.+.... ++++.-+.|+...... ..
T Consensus 990 --------------------------~~Dw~~r~~~~-g~k~ie~tgd~~pd~~------------------------~v 1018 (1230)
T KOG0952|consen 990 --------------------------SDDWSKRDELP-GIKVIELTGDVTPDVK------------------------AV 1018 (1230)
T ss_pred --------------------------ccchhhhcccC-CceeEeccCccCCChh------------------------he
Confidence 22222233333 7888888887664422 12
Q ss_pred cCCcEEEeCchHHHHHHhcCCC-cccccccEEEeehHHHHH
Q 010028 210 SAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 249 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~-~~~~~~~~lViDEah~l~ 249 (520)
..++++|+||+++-....+.+. .-+++++++|+||.|.+.
T Consensus 1019 ~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg 1059 (1230)
T KOG0952|consen 1019 READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG 1059 (1230)
T ss_pred ecCceEEcccccccCccccccchhhhccccceeeccccccc
Confidence 4679999999998666664332 337889999999999753
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.15 E-value=1.9e-05 Score=80.56 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=59.1
Q ss_pred HHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 42 ~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
.+..+++..++.-|..|+.+++. ..-.+|++|+|+|||.+..--++ ++... ...++|+++|+.--++|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVy-hl~~~--~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVY-HLARQ--HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHH-HHHHh--cCCceEEEcccchhHHHHHHHH
Confidence 44556888999999999998876 56679999999999987544333 34333 3567999999999999988887
Q ss_pred hcc
Q 010028 122 CKY 124 (520)
Q Consensus 122 ~~~ 124 (520)
.+-
T Consensus 475 h~t 477 (935)
T KOG1802|consen 475 HKT 477 (935)
T ss_pred Hhc
Confidence 663
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.08 E-value=2.1e-05 Score=79.79 Aligned_cols=66 Identities=26% Similarity=0.252 Sum_probs=51.3
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
..+.+-|.+|+...++ ...-.+|+||+|+|||.+... +++++.+. +.++|+++||..-++.+.+++
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~---~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVE-IISQLVKQ---KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHH-HHHHHHHc---CCeEEEEcCchHHHHHHHHHh
Confidence 4788899999887665 235688999999999998655 55555543 468999999999999887753
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.03 E-value=7.5e-06 Score=73.92 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=40.3
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
+...+..|..+++.+.+ ..-+++.||.|||||+.++..+++.+.+. .-.++++.-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g--~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEG--EYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTT--S-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCcEEEEEecCCCC
Confidence 34568899999998873 67788999999999999888888877663 44578888788765
No 181
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.99 E-value=4.1e-05 Score=65.30 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=55.6
Q ss_pred eccccCHHHHHHHHHHHHcCC-ceEEEEecccccCCCCCC--CcEEEEccCCCC--------------------------
Q 010028 404 YSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKPAY-------------------------- 454 (520)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidl~~--~~~VI~~~~p~s-------------------------- 454 (520)
+....+..+...+++.|++.. ..||+++..+++|+|+|+ ++.||..++|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 333444556789999998764 489999988999999997 677888776621
Q ss_pred -----HHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 455 -----IKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 455 -----~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
...+.|.+||+.|...+--+++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12345999999998765445555554
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.97 E-value=1.4e-05 Score=72.68 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=42.9
Q ss_pred CcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
+|++-|.+|+..++. ++ +-.+|+||.|+|||.+. ..+...+.. .+.++++++||...+..+
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---~g~~v~~~apT~~Aa~~L 62 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTLL-KALAEALEA---AGKRVIGLAPTNKAAKEL 62 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHHH-HHHHHHHHH---TT--EEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHHH-HHHHHHHHh---CCCeEEEECCcHHHHHHH
Confidence 478899999999875 24 44778999999999853 334444443 356899999999988773
No 183
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.95 E-value=4.5e-05 Score=65.18 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCc---eEEEEecc--cccCCCCCC--CcEEEEccCCCC----------------------------
Q 010028 410 QSVRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPAY---------------------------- 454 (520)
Q Consensus 410 ~~~r~~~~~~f~~g~~---~vLv~T~~--~~~Gidl~~--~~~VI~~~~p~s---------------------------- 454 (520)
..+..++++.|++... .||+++.. +++|||+|+ ++.||..++|..
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYL 109 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3455788999987543 68888876 999999997 678888886621
Q ss_pred ---HHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 455 ---IKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 455 ---~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
.....|.+||+.|...+--+++++++
T Consensus 110 ~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 110 FDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHHhCccccCccceEEEEEEec
Confidence 12334999999998866556666654
No 184
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.93 E-value=0.00043 Score=73.09 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=59.4
Q ss_pred CceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCC--CCC-----------cEEEEEecchHHHHHHHH
Q 010028 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLG-----------RCFTLLHKDEVKRFKKLL 490 (520)
Q Consensus 424 ~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~--~~g-----------~~i~~~~~~~~~~~~~~~ 490 (520)
..+.|.+-.++-+|.|-|++-.|+-+....|..+=.|-+||+.|.. +.| ...+++..++....+.+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999953 223 234567777777777777
Q ss_pred HHhcCCC
Q 010028 491 QKADNDS 497 (520)
Q Consensus 491 ~~~~~~~ 497 (520)
++++..+
T Consensus 563 kEI~~~s 569 (985)
T COG3587 563 KEINDES 569 (985)
T ss_pred HHHHHhh
Confidence 7777644
No 185
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.86 E-value=5.4e-05 Score=71.57 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCcchhhHHHHHhhhCCC---C---CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 49 SSLFPVQVAVWQETIGPG---L---FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~---~---~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
..++..|.+++--+...- + .+.-+++-..||.||-....-.++.+.... ..+.|+++.+.+|-.+
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G---r~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG---RKRAVWVSVSNDLKYD 106 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC---CCceEEEECChhhhhH
Confidence 367888988865543211 1 134478899999999987666677777654 3479999999999888
No 186
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.86 E-value=0.0021 Score=67.07 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=90.2
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCCC------c---------eeEEEeccccCHHHHHHHHHHHHcC---CceEEEEec
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGEL------R---------IKIKEYSGLQRQSVRSKTLKAFREG---KIQVLVSSD 432 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~~------~---------~~v~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T~ 432 (520)
+.+.|||..+...+..+...|.....+ + ..-..+.|..+..+|++++++|.+. ..-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 358999999998888888888663211 1 1233567888889999999999873 235778899
Q ss_pred ccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 433 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 433 ~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
...-||++-+.+.+|+++.-+++.--.|++-|+-|-|+...|+++-.--|
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 99999999999999999999999999999999999999999998865543
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=97.85 E-value=5.5e-05 Score=56.88 Aligned_cols=53 Identities=32% Similarity=0.406 Sum_probs=36.5
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
+.-++|.||+|||||...+-.+...+......+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34456699999999976544344333221122668999999999999976654
No 188
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.85 E-value=0.00029 Score=76.75 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=32.8
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH
Q 010028 210 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 250 (520)
....|++.||..+..-+-. +.+++..+..|||||||++..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~ 45 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIE 45 (814)
T ss_pred hcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccc
Confidence 3457999999999776665 348899999999999998743
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.81 E-value=8e-05 Score=69.25 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=43.7
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHH
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~ 115 (520)
++...+..|..++..+.. ..-+++.||+|+|||+.+...+++.+... .-.++++.-|+.+..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~--~~~kIiI~RP~v~~ge 118 (262)
T PRK10536 56 PILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHK--DVDRIIVTRPVLQADE 118 (262)
T ss_pred cccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcC--CeeEEEEeCCCCCchh
Confidence 455677788888776543 56788899999999998877666655443 2345666667766543
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.79 E-value=0.00014 Score=77.86 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=52.2
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
..+++.|.+|+..++. .....+|+||+|||||.+..- ++.++.. .+.++|+++||..-+.++.+.+.+
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~-ii~~~~~---~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVE-LIRQLVK---RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHH-HHHHHHH---cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4679999999988765 236788999999999986543 4444443 245899999999999998877765
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.67 E-value=0.00014 Score=72.76 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=34.7
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhh
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~ 120 (520)
-++|.|..|||||++++- ++..+.. ...+.++++++++..|...+.+.
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~ 50 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQN-SEEGKKVLYLCGNHPLRNKLREQ 50 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhc-cccCCceEEEEecchHHHHHHHH
Confidence 368899999999997643 5554511 13566899999999998875443
No 192
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.67 E-value=0.00047 Score=62.96 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
|+++-.--+.++ -.|+-|.+...+++++ ..+.+.+.+.-+|.|||.+. +|++..+..++ ..-+.+++| ++|..|
T Consensus 11 P~wLl~E~e~~i-liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg--~~LvrviVp-k~Ll~q 84 (229)
T PF12340_consen 11 PDWLLFEIESNI-LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVI-VPMLALALADG--SRLVRVIVP-KALLEQ 84 (229)
T ss_pred hHHHHHHHHcCc-eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchH-HHHHHHHHcCC--CcEEEEEcC-HHHHHH
Confidence 344433334455 8999999999998875 35788999999999999874 78887776542 223555566 678888
Q ss_pred HHhh
Q 010028 117 VNSA 120 (520)
Q Consensus 117 ~~~~ 120 (520)
.++-
T Consensus 85 ~~~~ 88 (229)
T PF12340_consen 85 MRQM 88 (229)
T ss_pred HHHH
Confidence 5443
No 193
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.66 E-value=0.00026 Score=75.58 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=86.2
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
...++..|++|+..++. .....+|.|-+|+|||..... +++.+.. .+.+||..+-|..-++.+-
T Consensus 667 ~~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~-LIkiL~~---~gkkVLLtsyThsAVDNIL--------- 730 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISL-LIKILVA---LGKKVLLTSYTHSAVDNIL--------- 730 (1100)
T ss_pred HhhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHH-HHHHHHH---cCCeEEEEehhhHHHHHHH---------
Confidence 35899999999888766 467789999999999986432 4444432 3567888888887766632
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
-.+... ++.+..+-.+.......+++.. ..+......+..+.
T Consensus 731 ------------------------------iKL~~~----~i~~lRLG~~~kih~~v~e~~~----~~~~s~ks~~~l~~ 772 (1100)
T KOG1805|consen 731 ------------------------------IKLKGF----GIYILRLGSEEKIHPDVEEFTL----TNETSEKSYADLKK 772 (1100)
T ss_pred ------------------------------HHHhcc----CcceeecCCccccchHHHHHhc----ccccchhhHHHHHH
Confidence 222221 3333333334444444444321 11122223344455
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHH
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~ 249 (520)
..+.+.|+.||=-.+...+.. -..|++.|||||-++.
T Consensus 773 ~~~~~~IVa~TClgi~~plf~-----~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 773 FLDQTSIVACTCLGINHPLFV-----NRQFDYCIIDEASQIL 809 (1100)
T ss_pred HhCCCcEEEEEccCCCchhhh-----ccccCEEEEccccccc
Confidence 566778888884443333333 3457899999999763
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.65 E-value=0.00019 Score=70.64 Aligned_cols=72 Identities=25% Similarity=0.167 Sum_probs=53.8
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
+++-|.+++.. ...+++|.|+.|||||.+.+--++..+...+....++|++++|+..+..+.+.+.+.+...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~ 72 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEE 72 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcc
Confidence 46778888754 2789999999999999987665555444443456689999999999999988888866554
No 195
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.30 E-value=0.00083 Score=72.92 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=66.1
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.|++-|.+|+.. ...+++|.|+.|||||.+...-+...+...+.+..++|+++.|+..|..+.+.+.+++....
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~~ 75 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRKE 75 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCccc
Confidence 478899988653 25789999999999999865544443433334456799999999999999999988765433
Q ss_pred ccccchhhhhHHhhhc
Q 010028 130 FGLIADHSIAEMCVQF 145 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (520)
......+.++.+|.++
T Consensus 76 ~~~v~i~TfHS~~~~i 91 (672)
T PRK10919 76 ARGLMISTFHTLGLDI 91 (672)
T ss_pred ccCcEEEcHHHHHHHH
Confidence 3345567777777663
No 196
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.28 E-value=0.0012 Score=72.01 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.++ .+++.|.+|+..+.. ++-++|.|+.|+|||.+. -.+++.+... .+..++++++||-.-|..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l-~~i~~~~~~~-~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTIT-RAIIELAEEL-GGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred cCC-CCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHH-HHHHHHHHHc-CCCceEEEEeCchHHHHH
Confidence 454 899999999988754 677899999999999854 3344433322 112468889999877766
No 197
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.23 E-value=0.002 Score=71.70 Aligned_cols=63 Identities=11% Similarity=-0.081 Sum_probs=45.5
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.|+ .+++-|.+|+..+.. ...-++|.|+.|+|||++ +-.+...+.. .+.+++.++||-.-+..
T Consensus 343 ~g~-~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAEN 405 (988)
T ss_pred cCC-CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHH
Confidence 344 799999999988765 233478899999999986 3334443332 35679999999776655
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.21 E-value=0.0027 Score=69.54 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=44.6
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
..+++-|.+|+..+.. +++-++|.|+.|+|||.+. -.+...+.. .+.++++++||-.-+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll-~~i~~~~~~---~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTML-KAAREAWEA---AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHH-HHHHHHHHh---CCCeEEEEeCcHHHHHH
Confidence 3789999999988765 2456789999999999863 334433332 35679999999776665
No 199
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0034 Score=63.95 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=28.5
Q ss_pred EECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 74 i~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
..++||||||++...-|+....++ -...|+.+....+.+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt 42 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKT 42 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHH
Confidence 468999999997655555544332 33588888887776664
No 200
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.15 E-value=0.0025 Score=67.70 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=44.7
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh-ccccccEEEEcCCHHHHHhHHhh
Q 010028 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 52 ~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~-~~~~~~vlil~Pt~~La~q~~~~ 120 (520)
.++|..|+...+. ++-.+|.|++|+|||.+.. .++..+... ..+..++++++||-.-|..+.+.
T Consensus 154 ~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~ 218 (615)
T PRK10875 154 VDWQKVAAAVALT----RRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTES 218 (615)
T ss_pred CHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHH
Confidence 4789999876554 6778999999999998642 244444332 12345788899998888775443
No 201
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.05 E-value=0.002 Score=68.23 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=43.7
Q ss_pred hhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc--ccccEEEEcCCHHHHHhHHhh
Q 010028 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 53 ~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~--~~~~vlil~Pt~~La~q~~~~ 120 (520)
++|..|+..++. ++-.+|.|+.|||||.+. ..++..+..... ...++++++||-.-|..+.+.
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTV-ARLLLALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHH-HHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 688888877665 678899999999999864 334444433211 125799999998877774433
No 202
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.04 E-value=0.0013 Score=65.90 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=42.9
Q ss_pred CcchhhHHHHHhhhCCC--CCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 50 SLFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~--~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.|++-|+++++.+++.+ ..+..++|.|+-|+|||+.+ -.+.+.+.. .+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~---~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS---RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc---ccceEEEecchHHHHHh
Confidence 36788999988875544 34578999999999999853 223333322 34568888888655443
No 203
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.01 E-value=0.0026 Score=69.45 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=66.7
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.|++-|.+++.. ...+++|.|+.|||||.+.+--+...+...+....++++++.|+..|.++-+.+.+.+....
T Consensus 1 ~Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~~ 74 (664)
T TIGR01074 1 KLNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKGE 74 (664)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCccc
Confidence 378889888643 25789999999999999865555544433333456799999999999999999988776544
Q ss_pred ccccchhhhhHHhhhc
Q 010028 130 FGLIADHSIAEMCVQF 145 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (520)
........++.+|.++
T Consensus 75 ~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 75 ARGLTISTFHTLGLDI 90 (664)
T ss_pred cCCeEEEeHHHHHHHH
Confidence 4455677778887773
No 204
>PRK06526 transposase; Provisional
Probab=96.97 E-value=0.0034 Score=59.39 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=41.4
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~ 101 (520)
.+|++..++..+++++.....+..+.| +. .+.+++++||+|+|||..+.. +...+.. .+
T Consensus 68 ~~le~fd~~~~~~~~~~~~~~l~~~~f--------------i~---~~~nlll~Gp~GtGKThLa~a-l~~~a~~---~g 126 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDF--------------VT---GKENVVFLGPPGTGKTHLAIG-LGIRACQ---AG 126 (254)
T ss_pred CChhhccCccCCCcchHHHHHHhcCch--------------hh---cCceEEEEeCCCCchHHHHHH-HHHHHHH---CC
Confidence 556666655555566655555544333 22 367899999999999986533 3333332 24
Q ss_pred ccEEEEcCCHHHHHh
Q 010028 102 LRALVVLPTRDLALQ 116 (520)
Q Consensus 102 ~~vlil~Pt~~La~q 116 (520)
.++++.+. .++..+
T Consensus 127 ~~v~f~t~-~~l~~~ 140 (254)
T PRK06526 127 HRVLFATA-AQWVAR 140 (254)
T ss_pred CchhhhhH-HHHHHH
Confidence 45655433 234443
No 205
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.96 E-value=0.0014 Score=61.55 Aligned_cols=35 Identities=26% Similarity=0.098 Sum_probs=25.0
Q ss_pred hhHHHHHhhhCCCCC--CCCEEEECCCCChhhHHhHH
Q 010028 54 VQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 54 ~Q~~ai~~~~~~~~~--~~~~li~apTGsGKT~~~ll 88 (520)
.|..+++.+.+.... ..++++.||+|+|||-++++
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStala 76 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALA 76 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHH
Confidence 466666655554433 35689999999999998654
No 206
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.93 E-value=0.0027 Score=69.73 Aligned_cols=89 Identities=16% Similarity=0.010 Sum_probs=65.6
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..|++-|.+|+.. ...+++|.|+.|||||.+...-+...+...+.+..++|+++-|+..|..+.+.+.+++...
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 4689999998643 2578999999999999986544443333233345679999999999999999999987643
Q ss_pred cccccchhhhhHHhhh
Q 010028 129 IFGLIADHSIAEMCVQ 144 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~ 144 (520)
. .......++.+|.+
T Consensus 77 ~-~~~~i~TfHs~~~~ 91 (715)
T TIGR01075 77 A-RGMWIGTFHGLAHR 91 (715)
T ss_pred c-cCcEEEcHHHHHHH
Confidence 2 23446777777776
No 207
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.92 E-value=0.0063 Score=68.31 Aligned_cols=74 Identities=15% Similarity=0.027 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
+++.........+ ..+++-|.+|+..+.. .++-.+|.|+.|+|||.+. -++...+.. .+.+++.++||-.-+
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l-~~~~~~~e~---~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMM-KAAREAWEA---AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHH-HHHHHHHHH---cCCeEEEEcCcHHHH
Confidence 4444444433333 3899999999987643 3566889999999999863 334443332 356899999997766
Q ss_pred Hh
Q 010028 115 LQ 116 (520)
Q Consensus 115 ~q 116 (520)
..
T Consensus 439 ~~ 440 (1102)
T PRK13826 439 EG 440 (1102)
T ss_pred HH
Confidence 65
No 208
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.89 E-value=0.0031 Score=69.29 Aligned_cols=90 Identities=14% Similarity=0.035 Sum_probs=66.1
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..|++-|.+|+.. ...+++|.|+.|||||.+...-+...+...+....++|+++-|+..|..+.+.+.+++...
T Consensus 8 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 8 DSLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HhcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC
Confidence 4689999998653 2578999999999999986544443332233455679999999999999999999987643
Q ss_pred cccccchhhhhHHhhhc
Q 010028 129 IFGLIADHSIAEMCVQF 145 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~ 145 (520)
. .......++.+|.++
T Consensus 82 ~-~~~~i~TfHs~~~~i 97 (721)
T PRK11773 82 Q-GGMWVGTFHGLAHRL 97 (721)
T ss_pred C-CCCEEEcHHHHHHHH
Confidence 2 234467777777763
No 209
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.80 E-value=0.0057 Score=66.14 Aligned_cols=89 Identities=18% Similarity=0.098 Sum_probs=65.5
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
-..+++-|.+|+. . ...+++|.|+.|||||.+.+--+...+........++|+++.|+..|..+.+.+.+.+.
T Consensus 194 ~~~L~~~Q~~av~---~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg- 266 (684)
T PRK11054 194 SSPLNPSQARAVV---N---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG- 266 (684)
T ss_pred CCCCCHHHHHHHh---C---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC-
Confidence 3579999999863 2 24678999999999999865434333333323456899999999999999998887664
Q ss_pred ccccccchhhhhHHhhhc
Q 010028 128 NIFGLIADHSIAEMCVQF 145 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (520)
...+..+.++.+|.++
T Consensus 267 --~~~v~v~TFHSlal~I 282 (684)
T PRK11054 267 --TEDITARTFHALALHI 282 (684)
T ss_pred --CCCcEEEeHHHHHHHH
Confidence 2456677888888874
No 210
>PRK04296 thymidine kinase; Provisional
Probab=96.63 E-value=0.0044 Score=56.02 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.-.++.||+|+|||..++- .+.++.. .+.+++++-|.
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~---~g~~v~i~k~~ 39 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEE---RGMKVLVFKPA 39 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHH---cCCeEEEEecc
Confidence 3467899999999986543 4444432 35578887663
No 211
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.60 E-value=0.00063 Score=71.77 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=62.7
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHc---CCceEE
Q 010028 354 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE---GKIQVL 428 (520)
Q Consensus 354 ~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~---g~~~vL 428 (520)
....|...|...++.. .+.+++||..-.+....+..++...+ ....+.|.....+|...+.+|+. .....|
T Consensus 612 k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfl 687 (696)
T KOG0383|consen 612 KASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPGSNQFCFL 687 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCCccceEEE
Confidence 3455666677776665 67799999999999999988887643 66788999999999999999985 345688
Q ss_pred EEecccccC
Q 010028 429 VSSDAMTRG 437 (520)
Q Consensus 429 v~T~~~~~G 437 (520)
++|.+.+-|
T Consensus 688 lstra~g~g 696 (696)
T KOG0383|consen 688 LSTRAGGLG 696 (696)
T ss_pred eecccccCC
Confidence 999886654
No 212
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.58 E-value=0.019 Score=48.22 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=13.1
Q ss_pred CCCEEEECCCCChhhHHhH
Q 010028 69 ERDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~l 87 (520)
++-++|.||+|+|||...-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 5678999999999998643
No 213
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.57 E-value=0.0068 Score=66.84 Aligned_cols=89 Identities=24% Similarity=0.184 Sum_probs=65.6
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..|++-|.+|+.. ...+++|.|+.|||||.+...-+...+...+....++|+++-|+.-|..+.+.+.+++...
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~ 76 (726)
T TIGR01073 3 AHLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPV 76 (726)
T ss_pred cccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccc
Confidence 4689999998653 2578999999999999986554444333333344579999999999999999998887643
Q ss_pred cccccchhhhhHHhhh
Q 010028 129 IFGLIADHSIAEMCVQ 144 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~ 144 (520)
........++.+|.+
T Consensus 77 -~~~~~i~TFHs~~~~ 91 (726)
T TIGR01073 77 -AEDIWISTFHSMCVR 91 (726)
T ss_pred -cCCcEEEcHHHHHHH
Confidence 234456677777766
No 214
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.02 Score=57.49 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHh-hhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~-~~~~~~~~vlil~ 108 (520)
..+++.||||+|||.+..--+ .++. .....+.++.+++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGINSDDKSLNIKIIT 213 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhhhccCCCeEEEEe
Confidence 457889999999999764433 3332 2112344566555
No 215
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.21 E-value=0.023 Score=55.00 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=48.7
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
+|+...+-.|.-|++.++. .. .=+.+.++-|||||+.++.+.+.+.+..+ .-.++++.=|+..+.++
T Consensus 224 wGi~prn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG~d 291 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVGED 291 (436)
T ss_pred hccCcccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcccc
Confidence 5776666677777777665 23 33677999999999988888887777652 34467777798887655
No 216
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.19 E-value=0.021 Score=54.06 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=58.9
Q ss_pred HHHHHHHcCCceEEEEecccccCCCCCC--------CcEEEEccCCCCHHHHHHHHhhcccCCCC-CcEEEEEec---ch
Q 010028 415 KTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLLHK---DE 482 (520)
Q Consensus 415 ~~~~~f~~g~~~vLv~T~~~~~Gidl~~--------~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~-g~~i~~~~~---~~ 482 (520)
...+.|.+|+.+|+|.+.+.+.|+.+.. -.+-|.+.+|||.+..+|..||++|.|+. .-.+.++.. .+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5577999999999999999999997762 34566788999999999999999999974 334444433 24
Q ss_pred HHHHHHHHHHhc
Q 010028 483 VKRFKKLLQKAD 494 (520)
Q Consensus 483 ~~~~~~~~~~~~ 494 (520)
.....-+.+.+.
T Consensus 132 ~Rfas~va~rL~ 143 (278)
T PF13871_consen 132 RRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 217
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.09 E-value=0.21 Score=60.60 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=45.2
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
.+++-|.+|+..++.. ..+-.+|.++.|+|||.+. -.+...+.. .+.++++++||-.-+..+
T Consensus 429 ~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l-~~l~~~~~~---~G~~V~~lAPTgrAA~~L 490 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIA-QLLLHLASE---QGYEIQIITAGSLSAQEL 490 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHH-HHHHHHHHh---cCCeEEEEeCCHHHHHHH
Confidence 6899999999887761 1355788999999999863 334433332 356899999998777664
No 218
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.04 E-value=0.046 Score=50.58 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=25.1
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
..++|+||+|+|||-. +-++...+.+. .++.+++++...
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~ 73 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE 73 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH
Confidence 4689999999999983 34344444433 245677777653
No 219
>PRK06893 DNA replication initiation factor; Validated
Probab=95.85 E-value=0.04 Score=51.39 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=14.1
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..++++||+|+|||...
T Consensus 40 ~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44789999999999853
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.83 E-value=0.049 Score=46.23 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=23.5
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
++.+++.||+|+|||..+ ..+...+.. .+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~-~~i~~~~~~---~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA-RAIANELFR---PGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHhhc---CCCCeEEEehh
Confidence 578999999999999743 323333321 23345555443
No 221
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.058 Score=47.79 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=30.0
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
++=.++.+|.+||||.. +++++.+....+.++++..|..+-
T Consensus 4 g~l~~i~gpM~SGKT~e----Ll~r~~~~~~~g~~v~vfkp~iD~ 44 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE----LLRRARRYKEAGMKVLVFKPAIDT 44 (201)
T ss_pred EEEEEEEccCcCcchHH----HHHHHHHHHHcCCeEEEEeccccc
Confidence 44568899999999985 444555544567789999997553
No 222
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.69 E-value=0.1 Score=55.14 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=49.1
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
-|+|.=.+-|+++++.+ ..+-.++.+|=|.|||.+..+.+...+ .. .+.++++.+|...-+.++++.+++.
T Consensus 169 ~~~~~~~~~id~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La-~f--~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 169 APSPRTLREIDRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMI-SF--LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CCChhhHHHHHHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHH-Hh--cCCeEEEECCChhhHHHHHHHHHHH
Confidence 34555555666666544 346678899999999997655444333 21 3568999999999999987775443
No 223
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.55 E-value=0.033 Score=53.18 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.4
Q ss_pred CCEEEECCCCChhhHHhH
Q 010028 70 RDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~l 87 (520)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 578999999999998653
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.55 E-value=0.075 Score=49.80 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=22.8
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
+..++++||+|+|||..... +...+.. .+.+++++.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a-~~~~~~~---~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA-ACAELSQ---RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHh---CCCeEEEEEH
Confidence 46789999999999985322 3333332 2345666543
No 225
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.53 E-value=0.082 Score=54.55 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=27.8
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
+.+++.|++|+|||... -++...+... .++.+++++.+ .++..+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~ 185 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARK 185 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHH
Confidence 56899999999999743 3344433332 24567777666 455444
No 226
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.49 E-value=0.13 Score=60.13 Aligned_cols=64 Identities=22% Similarity=0.169 Sum_probs=49.3
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
.|+-|.+||.. .+++++|.|.-|||||.+.+--++..+... ....+++++|=|+.-|..+.+.+
T Consensus 2 ~t~~Q~~ai~~------~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri 65 (1232)
T TIGR02785 2 WTDEQWQAIYT------RGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERI 65 (1232)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHH
Confidence 57889998752 478999999999999998766676666543 23346999999999998865553
No 227
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.47 E-value=0.052 Score=63.32 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=45.0
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh-hccccccEEEEcCCHHHHHh
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~-~~~~~~~vlil~Pt~~La~q 116 (520)
.+++.|.+|+..++.. .++-++|.|..|+|||.+. -.+++.+.. ....+.+++.++||-.-+..
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~ 899 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGE 899 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHH-HHHHHHHHHHhhccCceEEEEechHHHHHH
Confidence 7999999999888752 2466899999999999863 223332221 11235578999999887766
No 228
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.46 E-value=0.19 Score=53.12 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.+..++..|=-.|||.... +++..+... .++.++++.+|.+..++..++++...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~ 307 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGAR 307 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 5778889999999999765 555544433 25778999999999999988885443
No 229
>CHL00181 cbbX CbbX; Provisional
Probab=95.43 E-value=0.07 Score=51.55 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.3
Q ss_pred CCCEEEECCCCChhhHHhHH
Q 010028 69 ERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll 88 (520)
+.++++.||+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999986543
No 230
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.42 E-value=0.092 Score=50.69 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 357999999999999865
No 231
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.091 Score=52.50 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=20.5
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
.+++|.|+||+|||.+.-. +++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHhh
Confidence 4699999999999987543 66666554
No 232
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.15 E-value=0.11 Score=53.96 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=26.9
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
+.++++||+|+|||... -++...+... .++.+++++.. .++..+
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~-~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK-NPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHH
Confidence 56899999999999854 2344444432 23456776644 344433
No 233
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.11 E-value=0.11 Score=56.75 Aligned_cols=79 Identities=13% Similarity=0.234 Sum_probs=67.3
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cccCCCCCCCcEEE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 447 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidl~~~~~VI 447 (520)
.+.+++|.+|+..-|...++.++... ..+.++..++|+++..+|.++++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 56689999999999999888887653 23588999999999999999999999999999999975 55567888888877
Q ss_pred E
Q 010028 448 N 448 (520)
Q Consensus 448 ~ 448 (520)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 234
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.06 E-value=0.094 Score=62.08 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh-hccccccEEEEcCCHHHHHh
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~-~~~~~~~vlil~Pt~~La~q 116 (520)
..+++.|.+|+..++.. .++-++|.|..|+|||.+. -.++..+.. ....+.+++.++||-.-+..
T Consensus 966 ~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 966 EGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 37999999999988751 1356889999999999863 333333321 11234578999999877766
No 235
>PRK05642 DNA replication initiation factor; Validated
Probab=95.00 E-value=0.13 Score=48.18 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=22.4
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
..++++||+|+|||... -++...+.. .+.+++++..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~---~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQ---RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHh---CCCcEEEeeH
Confidence 56889999999999853 223333322 2346666553
No 236
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.99 E-value=0.063 Score=57.63 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=86.6
Q ss_pred CcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC-ce-EEEEecccccCCCCCCCcEEEEc
Q 010028 372 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQ-VLVSSDAMTRGMDVEGVNNVVNY 449 (520)
Q Consensus 372 ~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidl~~~~~VI~~ 449 (520)
.+++||+.-...+..+...|...+ +....+.|.|....|.+.+..|..+. .. .+++..+...|+++-...+|+..
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~ 616 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLM 616 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhh
Confidence 389999999988888888777443 67778889999999999999998643 33 34667888899999999999999
Q ss_pred cCCCCHHHHHHHHhhcccCCCCCcEEE
Q 010028 450 DKPAYIKTYIHRAGRTARAGQLGRCFT 476 (520)
Q Consensus 450 ~~p~s~~~~~Q~~GR~~R~~~~g~~i~ 476 (520)
|+=+|+..--|.+-|+.|.|+...+.+
T Consensus 617 d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 617 DPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred chhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999998776655
No 237
>PRK08727 hypothetical protein; Validated
Probab=94.94 E-value=0.084 Score=49.40 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=22.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
...+++.||+|+|||.... ++...+.. .+.+++++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~-a~~~~~~~---~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLAL-ALCAAAEQ---AGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH---cCCcEEEEe
Confidence 3559999999999997432 23333332 244666664
No 238
>PRK12377 putative replication protein; Provisional
Probab=94.94 E-value=0.038 Score=51.97 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
..+++.||+|+|||..+ .++...+... +..++++ +..++..+
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~---g~~v~~i-~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAK---GRSVIVV-TVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc---CCCeEEE-EHHHHHHH
Confidence 57899999999999854 3345555432 3345544 44566555
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.89 E-value=0.41 Score=41.45 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=24.2
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
++|.||+|+|||..+.. ++..+.. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh---cCCEEEEEECCcch
Confidence 57899999999986543 3322222 34567777665443
No 240
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.87 E-value=0.18 Score=52.86 Aligned_cols=92 Identities=8% Similarity=0.084 Sum_probs=69.9
Q ss_pred CCCcHHHHHHHHHh--cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 355 SKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 355 ~~~k~~~l~~~~~~--~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
...|.+....++.. ..++++||.+|+..-+..+++.|++.. +..+..+||+++..+|.+......+|+.+|+|+|.
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f--~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTr 84 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF--GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTR 84 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh--CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECCh
Confidence 34565554444432 246789999999999999999998642 35688999999999999999999999999999997
Q ss_pred ccccCCCCCCCcEEEEc
Q 010028 433 AMTRGMDVEGVNNVVNY 449 (520)
Q Consensus 433 ~~~~Gidl~~~~~VI~~ 449 (520)
..-. ..+.++.+||.-
T Consensus 85 salf-~p~~~l~lIIVD 100 (505)
T TIGR00595 85 SALF-LPFKNLGLIIVD 100 (505)
T ss_pred HHHc-CcccCCCEEEEE
Confidence 6332 456677777743
No 241
>PRK08181 transposase; Validated
Probab=94.85 E-value=0.35 Score=46.13 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=43.7
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~ 101 (520)
.+|++..+...+++++....++..+ +.++. .+.+++++||+|+|||..+. ++...+.. .+
T Consensus 75 ~tle~fd~~~~~~~~~~~~~~L~~~-------------~~~~~---~~~nlll~Gp~GtGKTHLa~-Aia~~a~~---~g 134 (269)
T PRK08181 75 KTLDSFDFEAVPMVSKAQVMAIAAG-------------DSWLA---KGANLLLFGPPGGGKSHLAA-AIGLALIE---NG 134 (269)
T ss_pred CCHhhCCccCCCCCCHHHHHHHHHH-------------HHHHh---cCceEEEEecCCCcHHHHHH-HHHHHHHH---cC
Confidence 4666666655555665555555432 01122 36789999999999997543 23333332 24
Q ss_pred ccEEEEcCCHHHHHhH
Q 010028 102 LRALVVLPTRDLALQV 117 (520)
Q Consensus 102 ~~vlil~Pt~~La~q~ 117 (520)
.+++|+. ..+|..++
T Consensus 135 ~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 135 WRVLFTR-TTDLVQKL 149 (269)
T ss_pred Cceeeee-HHHHHHHH
Confidence 4565554 45676664
No 242
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.84 E-value=0.14 Score=54.11 Aligned_cols=44 Identities=20% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
+.++|+|++|+|||... -++.+.+... ..+.+++++.. .+++.+
T Consensus 315 NpL~LyG~sGsGKTHLL-~AIa~~a~~~-~~g~~V~Yita-eef~~e 358 (617)
T PRK14086 315 NPLFIYGESGLGKTHLL-HAIGHYARRL-YPGTRVRYVSS-EEFTNE 358 (617)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHHHh-CCCCeEEEeeH-HHHHHH
Confidence 45899999999999843 2234433321 23456766654 445444
No 243
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.83 E-value=0.16 Score=55.38 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=28.5
Q ss_pred cchhhHHHHHhhhCCCCCC---CCE-EEECCCCChhhHHhHHHHHHHHh
Q 010028 51 LFPVQVAVWQETIGPGLFE---RDL-CINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~---~~~-li~apTGsGKT~~~ll~il~~l~ 95 (520)
=|.-|.+.+..++...+.+ .++ +|.|+||+|||.+.-. +++.+.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 3556666666666654432 244 5999999999987644 455553
No 244
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.80 E-value=0.051 Score=56.74 Aligned_cols=72 Identities=21% Similarity=0.096 Sum_probs=48.1
Q ss_pred hhhHHHHHhhhCC-----CCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 53 PVQVAVWQETIGP-----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 53 ~~Q~~ai~~~~~~-----~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
|+|.-.+..++.- ...-+.+++.-|=|.|||......++-.+.-.+..+..+++++++++.|...++.++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 5666665555421 01124588899999999986544444444433346678999999999999987775554
No 245
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.79 E-value=0.14 Score=52.33 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
..+++.||+|+|||... ..+...+... ..+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~-~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN-NPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh-CCCCcEEEEEH
Confidence 46899999999999854 3344444432 23456777743
No 246
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.68 E-value=0.22 Score=54.31 Aligned_cols=91 Identities=7% Similarity=0.066 Sum_probs=69.2
Q ss_pred CCcHHHHHHHHHh--cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc
Q 010028 356 KLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433 (520)
Q Consensus 356 ~~k~~~l~~~~~~--~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (520)
..|.+.....+.. ..++++||.+|++..+..+.+.|++.. +..+..+||+++..+|.+.......|+.+|+|+|..
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 3455554443332 246789999999999999999998732 367899999999999999999999999999999975
Q ss_pred cccCCCCCCCcEEEEc
Q 010028 434 MTRGMDVEGVNNVVNY 449 (520)
Q Consensus 434 ~~~Gidl~~~~~VI~~ 449 (520)
.. -..+.++.+||.-
T Consensus 251 al-~~p~~~l~liVvD 265 (679)
T PRK05580 251 AL-FLPFKNLGLIIVD 265 (679)
T ss_pred Hh-cccccCCCEEEEE
Confidence 32 2456677777643
No 247
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.2 Score=50.22 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=25.3
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
.+.++|+||+|+|||-. +-++.+......+..++++++.
T Consensus 113 ~nplfi~G~~GlGKTHL--l~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 113 YNPLFIYGGVGLGKTHL--LQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCcEEEECCCCCCHHHH--HHHHHHHHHhhCCCceEEeccH
Confidence 57899999999999984 3344333333234556666654
No 248
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.60 E-value=0.18 Score=54.56 Aligned_cols=79 Identities=14% Similarity=0.234 Sum_probs=66.9
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cccCCCCCCCcEEE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 447 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidl~~~~~VI 447 (520)
.+.+++|.+|+..-|...++.++... ..+.++..++|+++..+|...++...+|+.+|+|+|.. +...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 56689999999999999988887653 23688999999999999999999999999999999975 44567788888877
Q ss_pred E
Q 010028 448 N 448 (520)
Q Consensus 448 ~ 448 (520)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 249
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.58 E-value=0.33 Score=43.26 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=28.0
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
.+.++++.||+|+|||..+.. +...+.. .+..++|+ +..+|...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~a-i~~~~~~---~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVA-IANEAIR---KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHH-HHHHHHH---TT--EEEE-EHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHH-HHHHhcc---CCcceeEe-ecCceeccc
Confidence 468899999999999987533 4444443 24456664 455677664
No 250
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.55 E-value=0.1 Score=63.16 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=44.5
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhH---HHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~l---l~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
..+++.|.+|+..++.. .++-++|.|+.|+|||.+.- -++.+.+. ..+.+++.++||..-+.+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---~~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---SEQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---hcCCeEEEEeChHHHHHH
Confidence 47999999999987651 13557889999999998641 12222222 135679999999887766
No 251
>PTZ00293 thymidine kinase; Provisional
Probab=94.52 E-value=0.12 Score=47.03 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
|+=-++.||+++|||.-.+- .+.+. ...+.+++++-|..+
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y---~~ag~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRF---TYSEKKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHH---HHcCCceEEEEeccc
Confidence 55568899999999975433 33322 234667999999754
No 252
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.45 E-value=0.17 Score=49.82 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.+++++||+|+|||..+-+ +..- -+..+.-+..+.+-+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l--iA~~-----~~~~f~~~sAv~~gvkd 88 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL--IAGT-----TNAAFEALSAVTSGVKD 88 (436)
T ss_pred ceeEEECCCCCCHHHHHHH--HHHh-----hCCceEEeccccccHHH
Confidence 6799999999999985433 3221 22345555555444444
No 253
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.44 E-value=0.29 Score=52.87 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=75.5
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 355 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
...|.+....++... .++.+||.++....+..+...|+.... +..+..+|+.++..+|.+......+|+.+|+|+|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 347888877777654 577899999999999999999987532 24688999999999999999999999999999998
Q ss_pred ccccCCCCCCCcEEEEcc
Q 010028 433 AMTRGMDVEGVNNVVNYD 450 (520)
Q Consensus 433 ~~~~Gidl~~~~~VI~~~ 450 (520)
+.- =.-++++.+||.-+
T Consensus 249 SAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 249 SAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eeE-EeccCCCCEEEEEc
Confidence 733 34556677766543
No 254
>PRK08116 hypothetical protein; Validated
Probab=94.36 E-value=0.2 Score=47.93 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=26.5
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
..++++|++|+|||..+. ++++.+... +..++++ +..++..+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~---~~~v~~~-~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK---GVPVIFV-NFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc---CCeEEEE-EHHHHHHH
Confidence 348999999999998653 456655543 3345554 33444444
No 255
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=94.28 E-value=0.13 Score=48.16 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=31.1
Q ss_pred CCcEEEeCchHHHHHHhcCCCcccccccEEEeehHH
Q 010028 211 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 246 (520)
Q Consensus 211 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 246 (520)
...|.||||+++..++.. +.+.++.+.+||+|--|
T Consensus 177 ~~~i~vGTP~Rl~kLle~-~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 177 RVHIAVGTPGRLSKLLEN-GALSLSNLKRIVLDWSY 211 (252)
T ss_pred CceEEEeChHHHHHHHHc-CCCCcccCeEEEEcCCc
Confidence 568999999999999976 56889999999999876
No 256
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.1 Score=53.97 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.0
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
+..+++||.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 5689999999999987644
No 257
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.19 E-value=0.12 Score=49.00 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=25.7
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhc---cccccEEEEcCCHHHH
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLA 114 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~---~~~~~vlil~Pt~~La 114 (520)
.+|.||||+||+- ++.+++... .....|+|++|.+...
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 4789999999996 334343321 1344699999997654
No 258
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.11 E-value=0.093 Score=49.67 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=36.0
Q ss_pred CccCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHH
Q 010028 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (520)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~ 93 (520)
....|..+-+|+++. +++-+.+ + +. ....=++|.||||||||... .+++.+
T Consensus 98 lR~Ip~~i~~~e~Lg------lP~i~~~-~-------------------~~--~~~GLILVTGpTGSGKSTTl-AamId~ 148 (353)
T COG2805 98 LRLIPSKIPTLEELG------LPPIVRE-L-------------------AE--SPRGLILVTGPTGSGKSTTL-AAMIDY 148 (353)
T ss_pred EeccCccCCCHHHcC------CCHHHHH-H-------------------Hh--CCCceEEEeCCCCCcHHHHH-HHHHHH
Confidence 556777777777777 4433333 1 11 01345889999999999874 557777
Q ss_pred Hhhh
Q 010028 94 LSNR 97 (520)
Q Consensus 94 l~~~ 97 (520)
+.+.
T Consensus 149 iN~~ 152 (353)
T COG2805 149 INKH 152 (353)
T ss_pred Hhcc
Confidence 7654
No 259
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.07 E-value=0.098 Score=51.24 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=40.3
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
.+++.|.+.+..++. .+.+++|.|+||||||.. +-.++..+... .+..+++++-.+.++.
T Consensus 132 ~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-~~~~rivtIEd~~El~ 191 (319)
T PRK13894 132 IMTAAQREAIIAAVR---AHRNILVIGGTGSGKTTL-VNAIINEMVIQ-DPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHhhhhc-CCCceEEEEcCCCccc
Confidence 356778888776665 478999999999999964 34455443211 2345677777777663
No 260
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.06 E-value=0.22 Score=51.24 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=25.3
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
+.++++||+|+|||..+ -++...+... .++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~-~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN-EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH
Confidence 56999999999999854 2344444432 23456777764
No 261
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.1 Score=53.53 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.2
Q ss_pred CEEEECCCCChhhHHhHH
Q 010028 71 DLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll 88 (520)
.++++||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999987644
No 262
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.97 E-value=0.088 Score=50.94 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=45.8
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.|...++.|...+..+.. ...++++++.||||||.. +-++.... ....+++.+=-|.+|.-+
T Consensus 154 ~~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl--LNal~~~i---~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL--LNALSGFI---DSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH--HHHHHhcC---CCcccEEEEeehhhhccC
Confidence 467899999988877665 346999999999999983 32333222 234489999999998665
No 263
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.91 E-value=0.23 Score=46.09 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.2
Q ss_pred CCCEEEECCCCChhhHHhH
Q 010028 69 ERDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~l 87 (520)
+..+++.||+|+|||..+.
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999998653
No 264
>PRK14974 cell division protein FtsY; Provisional
Probab=93.89 E-value=0.42 Score=47.10 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=21.7
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
-+++.|++|+|||.+... +...+.. .+.+++++.
T Consensus 142 vi~~~G~~GvGKTTtiak-LA~~l~~---~g~~V~li~ 175 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAK-LAYYLKK---NGFSVVIAA 175 (336)
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHHHH---cCCeEEEec
Confidence 467899999999986433 3333332 344666665
No 265
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.76 E-value=0.02 Score=50.94 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=33.9
Q ss_pred CCchhHHHhhccCCcEEEeCchHHHHHHhcCCCc-ccccccEEEeehHHHHHH
Q 010028 199 YDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 199 ~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~-~~~~~~~lViDEah~l~~ 250 (520)
.+++...+.....++|+|+++..+.+-....... ...+-.+|||||||.+.+
T Consensus 107 ~CPY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 107 VCPYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp --HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred CChhHHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4567777788888999999999886644331211 123446999999998754
No 266
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.76 E-value=0.89 Score=47.00 Aligned_cols=71 Identities=20% Similarity=0.122 Sum_probs=49.6
Q ss_pred CcchhhHHHHHhhhCCCCCC------CCEEEECCCCChhhHHhH-HHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 50 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYA-LPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~------~~~li~apTGsGKT~~~l-l~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
.+-|+|.-.+..++.-...+ +..+|..|=+-|||..+. +.....+... ..+..+.+++|+.+.+.+.++.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHHH
Confidence 78899999888877432222 347899999999998544 3233333333 45678999999999998865553
No 267
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=0.17 Score=50.49 Aligned_cols=20 Identities=35% Similarity=0.425 Sum_probs=16.7
Q ss_pred CCCEEEECCCCChhhHHhHH
Q 010028 69 ERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll 88 (520)
+..+++.||||+|||.....
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56789999999999997544
No 268
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.65 E-value=0.22 Score=50.70 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEE
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil 107 (520)
.+++|.||+|+|||...- .++..+.... .+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~-~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIA-VKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhc-CCcEEEEE
Confidence 679999999999998643 3444443321 22344444
No 269
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.64 E-value=0.24 Score=47.36 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHH
Q 010028 70 RDLCINSPTGSGKTLS 85 (520)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (520)
.+++|+|+||-|||..
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 5799999999999983
No 270
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.63 E-value=0.16 Score=49.76 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=40.0
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
.+++.|.+.+..++. .+.+++|+|+||||||... -.++..+... .+..+++.+=.+.+|.
T Consensus 128 ~~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll-~aL~~~i~~~-~~~~rivtiEd~~El~ 187 (323)
T PRK13833 128 IMTEAQASVIRSAID---SRLNIVISGGTGSGKTTLA-NAVIAEIVAS-APEDRLVILEDTAEIQ 187 (323)
T ss_pred CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHH-HHHHHHHhcC-CCCceEEEecCCcccc
Confidence 466778887777666 4688999999999999853 4445444321 1334677666666653
No 271
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.62 E-value=0.2 Score=41.27 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=27.8
Q ss_pred CCCEE--EECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 69 ERDLC--INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 69 ~~~~l--i~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.+..+ ++|+||+|||++.-+ +.+++...+.+..-|....++
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~l-iA~~ly~~G~~S~~V~~f~~~ 93 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRL-IAEHLYKSGMKSPFVHQFIAT 93 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHH-HHHHHHhcccCCCceeeeccc
Confidence 45655 699999999998765 666666654455555555544
No 272
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.53 E-value=0.28 Score=49.36 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=19.0
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..+++|.||+|+|||.+. -.++..+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 367999999999999864 33554443
No 273
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.52 E-value=0.051 Score=62.76 Aligned_cols=95 Identities=23% Similarity=0.397 Sum_probs=77.2
Q ss_pred cEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccC-----------HHHHHHHHHHHHcCCceEEEEecccccCCCCC
Q 010028 373 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-----------QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 441 (520)
Q Consensus 373 k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~-----------~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~ 441 (520)
..++|++.+..+....+.+++... ..+..+.|.+. ...+.++++.|.....++|++|.++.+|+|++
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFS--NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVP 371 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhc--cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchh
Confidence 569999999999999888877432 22222444322 23467889999999999999999999999999
Q ss_pred CCcEEEEccCCCCHHHHHHHHhhcccCC
Q 010028 442 GVNNVVNYDKPAYIKTYIHRAGRTARAG 469 (520)
Q Consensus 442 ~~~~VI~~~~p~s~~~~~Q~~GR~~R~~ 469 (520)
.++.++.++.|...+.|+|..||+-+..
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999987654
No 274
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.50 E-value=0.2 Score=48.76 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=39.7
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
.+++.|.+.+..++. .+.+++|+||||||||... -.++..+... .+..+++.+=.+.++.
T Consensus 116 ~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTll-~al~~~i~~~-~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 116 IMTAAQRDVLREAVL---ARKNILVVGGTGSGKTTLA-NALLAEIAKN-DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHH-HHHHHHhhcc-CCCceEEEECCchhhc
Confidence 355566677666654 4689999999999999853 3344444321 1345777777777764
No 275
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.17 Score=52.36 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.0
Q ss_pred CEEEECCCCChhhHHhHH
Q 010028 71 DLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll 88 (520)
.++++||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999986543
No 276
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.45 E-value=0.25 Score=50.82 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=24.6
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
+.+++.||+|+|||.... ++...+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~---~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES---GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCEEEeeH
Confidence 568999999999998543 344444432 456777764
No 277
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.44 E-value=0.32 Score=53.42 Aligned_cols=89 Identities=11% Similarity=0.278 Sum_probs=65.1
Q ss_pred HHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCC--CceeEEE-eccccCHHHHHHHHHHHHcCCceEEEEecccc-cC
Q 010028 362 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKE-YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT-RG 437 (520)
Q Consensus 362 l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~--~~~~v~~-~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~-~G 437 (520)
+..+.-...++++++.+||..-+...++.|+.++. .+..+.. +|+.++..+++..+++|.+|..+|||+|..+- .-
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~ 195 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKR 195 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhh
Confidence 44455556778999999999999999988877641 1233333 99999999999999999999999999997633 22
Q ss_pred CC-CC--CCcEEEEcc
Q 010028 438 MD-VE--GVNNVVNYD 450 (520)
Q Consensus 438 id-l~--~~~~VI~~~ 450 (520)
.| +. ..++|+.-|
T Consensus 196 ~e~L~~~kFdfifVDD 211 (1187)
T COG1110 196 FEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHHhcccCCCEEEEcc
Confidence 22 22 266666433
No 278
>PHA02533 17 large terminase protein; Provisional
Probab=93.42 E-value=0.6 Score=49.18 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=48.6
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
.|+|+|.+.+..+.. ++-.++..+=..|||.+....++..+... ++..+++++|+...|..+++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 588999998776532 45567888999999997654444333322 355899999999999887665443
No 279
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.11 Score=51.14 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=37.9
Q ss_pred cCCcccCccCCcccc----------cccCCCCCCCCCCCHHHHHHHHHCCCCCcch--hhHHHHHhhhCCCCCCCCEEEE
Q 010028 8 SMPVLPWMRSPVDVS----------LFEDCPLDHLPCLDPRLKVALQNMGISSLFP--VQVAVWQETIGPGLFERDLCIN 75 (520)
Q Consensus 8 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~--~Q~~ai~~~~~~~~~~~~~li~ 75 (520)
+...+||.++-.... .--.-|+..+- |++.+...+...-..+-+. +| .--+++++.
T Consensus 323 Srg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~Vi-L~psLe~Rie~lA~aTaNTK~h~-----------apfRNilfy 390 (630)
T KOG0742|consen 323 SRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVI-LHPSLEKRIEDLAIATANTKKHQ-----------APFRNILFY 390 (630)
T ss_pred ccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCee-cCHHHHHHHHHHHHHhccccccc-----------chhhheeee
Confidence 456678876543211 11123455543 7788777776533222211 12 014889999
Q ss_pred CCCCChhhHH
Q 010028 76 SPTGSGKTLS 85 (520)
Q Consensus 76 apTGsGKT~~ 85 (520)
+|+|+|||.+
T Consensus 391 GPPGTGKTm~ 400 (630)
T KOG0742|consen 391 GPPGTGKTMF 400 (630)
T ss_pred CCCCCCchHH
Confidence 9999999974
No 280
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.38 E-value=0.22 Score=51.97 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=21.8
Q ss_pred hHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHH
Q 010028 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll 88 (520)
|..++..+.+.+..+ ..++++||.|+|||.++.+
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 444444433323334 4689999999999997644
No 281
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.32 E-value=0.15 Score=51.27 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=21.4
Q ss_pred hhHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHH
Q 010028 54 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 54 ~Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll 88 (520)
.|..++..+.+.+..+ +.++++||.|+|||..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHH
Confidence 3444444433332233 3468999999999986543
No 282
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.27 E-value=0.52 Score=53.01 Aligned_cols=79 Identities=11% Similarity=0.241 Sum_probs=66.0
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cccCCCCCCCcEEE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 447 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidl~~~~~VI 447 (520)
.+.+++|.+||..-|...++.++... ..+.++..++|..+..++.++++.+++|+.+|+|+|.. +...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 46789999999999999998887642 33467888999999999999999999999999999985 44567888888877
Q ss_pred E
Q 010028 448 N 448 (520)
Q Consensus 448 ~ 448 (520)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 283
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.21 E-value=0.32 Score=53.15 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=64.3
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.+++-|.+|+... ...++|.|+.|||||.+..--+...+........+++.++=|+.-|.++.+++.+++....
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~~ 75 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLPA 75 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCccc
Confidence 5789999986542 6889999999999999865545544444334445699999999999999999999887522
Q ss_pred ccccchhhhhHHhhhc
Q 010028 130 FGLIADHSIAEMCVQF 145 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (520)
........++.+|.++
T Consensus 76 ~~~~~v~TfHs~~~~~ 91 (655)
T COG0210 76 AEGLTVGTFHSFALRI 91 (655)
T ss_pred ccCcEEeeHHHHHHHH
Confidence 2224455555555553
No 284
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.06 E-value=0.35 Score=52.30 Aligned_cols=93 Identities=10% Similarity=0.117 Sum_probs=75.8
Q ss_pred ccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEE
Q 010028 353 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 430 (520)
Q Consensus 353 ~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (520)
.....|.+...+++... .++.+||.+|-......+...|+..- +.++..+|+++++.+|.+.......|+.+|+|+
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF--g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF--GAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh--CCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 34567888888888764 67789999999999999988887642 378999999999999999999999999999999
Q ss_pred ecccccCCCCCCCcEEEE
Q 010028 431 SDAMTRGMDVEGVNNVVN 448 (520)
Q Consensus 431 T~~~~~Gidl~~~~~VI~ 448 (520)
|.+.- -.-++++-+||.
T Consensus 303 tRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 303 TRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred echhh-cCchhhccEEEE
Confidence 98732 345556676663
No 285
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.06 E-value=0.43 Score=49.24 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
-+++++. .+..+.-++|.+++|+|||...+..+.. ... .+.+++|++-. +...|
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~-~a~---~g~~vlYvs~E-es~~q 122 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR-LAA---AGGKVLYVSGE-ESASQ 122 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH-HHh---cCCeEEEEEcc-ccHHH
Confidence 3455565 3334566889999999999865443333 221 24578888754 33445
No 286
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.05 E-value=1.9 Score=48.55 Aligned_cols=91 Identities=11% Similarity=0.273 Sum_probs=69.6
Q ss_pred cHHH-HHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhc-CCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-c
Q 010028 358 KPLY-LVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-A 433 (520)
Q Consensus 358 k~~~-l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~ 433 (520)
|.+. +...+.. ..++++.|.+||-=-|+.=++.|+++ .....++..+..-.+.++..++++..++|+++|+|+|. .
T Consensus 628 KTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL 707 (1139)
T COG1197 628 KTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL 707 (1139)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh
Confidence 4443 3334443 36788999999977666666655442 23348888999999999999999999999999999997 5
Q ss_pred cccCCCCCCCcEEEE
Q 010028 434 MTRGMDVEGVNNVVN 448 (520)
Q Consensus 434 ~~~Gidl~~~~~VI~ 448 (520)
++.+|-+.++-++|.
T Consensus 708 L~kdv~FkdLGLlII 722 (1139)
T COG1197 708 LSKDVKFKDLGLLII 722 (1139)
T ss_pred hCCCcEEecCCeEEE
Confidence 778898888888774
No 287
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.03 E-value=0.55 Score=47.11 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHhhhCC-CCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 58 VWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 58 ai~~~~~~-~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
-+++++.. +..+.-+++.+++|+|||...+..+ ..+.. .+.+++|+.-.. ...|
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a-~~~a~---~g~~VlYvs~EE-s~~q 124 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA-ARLAK---RGGKVLYVSGEE-SPEQ 124 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHH-HHHHh---cCCeEEEEECCc-CHHH
Confidence 34555542 3335668999999999998654433 33322 235788887543 2345
No 288
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.00 E-value=0.15 Score=55.90 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=14.8
Q ss_pred CEEEECCCCChhhHHhHH
Q 010028 71 DLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll 88 (520)
-.+++||.|+|||.++.+
T Consensus 40 AyLFtGPpGtGKTTLARi 57 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999987543
No 289
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.99 E-value=0.42 Score=47.55 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=19.3
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l 94 (520)
++-+.+.||||.|||.+..--+....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57788999999999998555333333
No 290
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.94 E-value=0.4 Score=49.68 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=50.2
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhh--ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFD 146 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~--~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (520)
++-++|+|..|||||.+++=-++-.+... ...+..+|++.|++-..+- +...+|...........+.+++...=
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleY----is~VLPeLGe~~V~q~Tf~e~a~~iL 301 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEY----ISRVLPELGEEGVVQETFEEWALAIL 301 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHH----HHHhchhhccCceeeccHHHHHHHhc
Confidence 46688999999999998654333333222 1223459999999988765 45556666666667777776666643
Q ss_pred cc
Q 010028 147 SL 148 (520)
Q Consensus 147 ~~ 148 (520)
.+
T Consensus 302 g~ 303 (747)
T COG3973 302 GL 303 (747)
T ss_pred CC
Confidence 33
No 291
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.84 E-value=0.14 Score=52.12 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=31.6
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
..+.|.+.+..+++. ...=+++.||||||||.. ++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~--p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNR--PQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhC--CCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 367777777777661 234478899999999987 46677776554
No 292
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.84 E-value=0.47 Score=48.54 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=16.1
Q ss_pred CCCEEEECCCCChhhHHhHH
Q 010028 69 ERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll 88 (520)
++.+++.+|||+|||.....
T Consensus 221 ~~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688899999999986543
No 293
>PRK09183 transposase/IS protein; Provisional
Probab=92.79 E-value=0.39 Score=45.65 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=27.2
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.+.++++.||+|+|||..+.. +...+.. .+.+++++. ..++..+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~a-l~~~a~~---~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIA-LGYEAVR---AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHH-HHHHHHH---cCCeEEEEe-HHHHHHH
Confidence 478899999999999985433 2222221 344676664 3455544
No 294
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.64 E-value=0.29 Score=46.34 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=32.6
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~ 120 (520)
.+.++++.||+|+|||..+ .++...+.+ .+.++ ..+++.+++.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~---~g~sv-~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLK---AGISV-LFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH---cCCeE-EEEEHHHHHHHHHHH
Confidence 5789999999999999865 334444542 23344 445667888885443
No 295
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.63 E-value=0.67 Score=44.38 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=28.4
Q ss_pred hCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 63 ~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
...+..+.-++|.|++|+|||...+..+.+.... .+.++++++-
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~ 67 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISL 67 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEc
Confidence 3344457788999999999998654433332222 2457888874
No 296
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.62 E-value=0.28 Score=52.19 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.5
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
..++++||.|+|||.++.+
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4569999999999987643
No 297
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.56 E-value=0.51 Score=50.90 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=43.2
Q ss_pred CcchhhHHHHHhhhCCCCCCC-CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHh
Q 010028 50 SLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 119 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~-~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~ 119 (520)
..+..|.++++.+...+..++ -+++.|.=|=|||.+.=+.+....... ...+++|.+|+.+-++.+++
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--~~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA--GSVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc--CCceEEEeCCCHHHHHHHHH
Confidence 345567776655443333343 678899999999987554442222111 14579999999998877433
No 298
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.28 Score=48.14 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=24.1
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
+-++..+|+|+|||+.+ +.+... ...+.|=+.+-.|+..
T Consensus 246 kgvLm~GPPGTGKTlLA-----KAvATE---c~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA-----KAVATE---CGTTFFNVSSSTLTSK 284 (491)
T ss_pred ceeeeeCCCCCcHHHHH-----HHHHHh---hcCeEEEechhhhhhh
Confidence 56899999999999732 222222 2345665555555544
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.37 E-value=0.55 Score=45.26 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=15.4
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
+.+++.||||+|||.....
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678899999999986543
No 300
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.34 E-value=0.32 Score=44.35 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=21.5
Q ss_pred cccccEEEeehHHHHHHHHhhhhHHHHHHhhcc
Q 010028 234 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 266 (520)
Q Consensus 234 ~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~ 266 (520)
....+.+|+||||.|- .+-...+++.++....
T Consensus 111 ~grhKIiILDEADSMT-~gAQQAlRRtMEiyS~ 142 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMT-AGAQQALRRTMEIYSN 142 (333)
T ss_pred CCceeEEEeeccchhh-hHHHHHHHHHHHHHcc
Confidence 3556799999999874 3445566666665443
No 301
>PRK05973 replicative DNA helicase; Provisional
Probab=92.32 E-value=0.42 Score=44.55 Aligned_cols=72 Identities=17% Similarity=0.060 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHH-----HHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAV-----WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a-----i~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
|+..+-+.-.+-||..=......+ .+.+...+..|.-++|.|++|+|||...+-.+.+.+. .+.+++|++-
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~----~Ge~vlyfSl 100 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK----SGRTGVFFTL 100 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEEE
Confidence 666665555555664322111111 1224455555677899999999999876554444332 2456888874
Q ss_pred C
Q 010028 110 T 110 (520)
Q Consensus 110 t 110 (520)
-
T Consensus 101 E 101 (237)
T PRK05973 101 E 101 (237)
T ss_pred e
Confidence 4
No 302
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.29 E-value=0.27 Score=53.00 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=14.8
Q ss_pred CEEEECCCCChhhHHhHH
Q 010028 71 DLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll 88 (520)
-+|++||.|+|||..+.+
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999986543
No 303
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.25 E-value=0.52 Score=52.90 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHH--------------hhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--------------SNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 56 ~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l--------------~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
+.-..........|++++..--.|.|||..-+...+... -......+.+||++|. ++-.|
T Consensus 361 q~~~~~~~~~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~Q----- 434 (1394)
T KOG0298|consen 361 QKDEVLCSGDKKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQ----- 434 (1394)
T ss_pred hhhHHhhcCCccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHH-----
Q ss_pred hcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCc
Q 010028 122 CKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 201 (520)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (520)
|...+....+.. +++...-|-.........-..+.
T Consensus 435 ----------------------------------W~~EI~kH~~~~-lKv~~Y~Girk~~~~~~~el~~y---------- 469 (1394)
T KOG0298|consen 435 ----------------------------------WFEEIHKHISSL-LKVLLYFGIRKTFWLSPFELLQY---------- 469 (1394)
T ss_pred ----------------------------------HHHHHHHhcccc-ceEEEEechhhhcccCchhhhcc----------
Q ss_pred hhHHHhhccCCcEEEeCchHHHHHHhcCCCcc-------------------cccccEEEeehHHHHHHHHhhhhHHHHHH
Q 010028 202 EDVLQELQSAVDILVATPGRLMDHINATRGFT-------------------LEHLCYLVVDETDRLLREAYQAWLPTVLQ 262 (520)
Q Consensus 202 ~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~-------------------~~~~~~lViDEah~l~~~~~~~~l~~i~~ 262 (520)
||++||++.|.+-+.+..... .=.+=-|++|||+++-. .....-++..
T Consensus 470 -----------DIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~~a~M~~ 536 (1394)
T KOG0298|consen 470 -----------DIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSAAAEMVR 536 (1394)
T ss_pred -----------CEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHHHHHHHH
Q ss_pred hhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhh
Q 010028 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 322 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 322 (520)
+++... .=+.|+|+-..++.+
T Consensus 537 rL~~in---------------------------------------~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 537 RLHAIN---------------------------------------RWCVTGTPIQKIDDL 557 (1394)
T ss_pred Hhhhhc---------------------------------------eeeecCCchhhhhhh
No 304
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.18 E-value=0.58 Score=53.93 Aligned_cols=79 Identities=11% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhc-CCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cccCCCCCCCcEEE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 447 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidl~~~~~VI 447 (520)
.+.+++|.+|+..-|..+++.++.. +..+.++..+++..+..++.++++..++|+.+|+|+|.. +...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 5678999999999999999888763 233467888999999999999999999999999999974 44456677777766
Q ss_pred E
Q 010028 448 N 448 (520)
Q Consensus 448 ~ 448 (520)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 305
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.16 E-value=0.76 Score=45.16 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=17.2
Q ss_pred cccEEEeehHHHHHHHHhhhhHHHHHHh
Q 010028 236 HLCYLVVDETDRLLREAYQAWLPTVLQL 263 (520)
Q Consensus 236 ~~~~lViDEah~l~~~~~~~~l~~i~~~ 263 (520)
..++|||||+|.+........+..+++.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 3569999999987333333444444443
No 306
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=0.18 Score=52.79 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.5
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
...+++||.|+|||.++.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3479999999999987643
No 307
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.95 E-value=1.5 Score=43.24 Aligned_cols=45 Identities=24% Similarity=0.493 Sum_probs=33.0
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.++|||...|+.++....-....+++||.|.|||..+.. +.+.+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 357899999999987532235689999999999986543 444444
No 308
>PRK04195 replication factor C large subunit; Provisional
Probab=91.90 E-value=0.52 Score=49.34 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999854
No 309
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.84 E-value=0.48 Score=50.56 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=21.9
Q ss_pred hHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHH
Q 010028 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll 88 (520)
|..++..+.+.+..+ +.++++||.|+|||..+.+
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARI 65 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 444444433333233 4689999999999987644
No 310
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.79 E-value=0.26 Score=52.76 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=21.5
Q ss_pred hHHHHHhhhCCCCCCC---CEEEECCCCChhhHHhHH
Q 010028 55 QVAVWQETIGPGLFER---DLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~~---~~li~apTGsGKT~~~ll 88 (520)
|..++..+.+.+..++ -.+++||.|+|||.++.+
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARL 57 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 5555444443333332 368999999999987544
No 311
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=91.77 E-value=0.033 Score=49.14 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=23.5
Q ss_pred EEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhh
Q 010028 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 73 li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~ 120 (520)
+|.|+-|-|||.+.-+.+ ..+... ...++++.+|+.+-++.+++.
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~~--~~~~I~vtAP~~~~~~~lf~~ 45 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQK--GKIRILVTAPSPENVQTLFEF 45 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS-------EEEE-SS--S-HHHHHC
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHh--cCceEEEecCCHHHHHHHHHH
Confidence 478999999998644322 223222 124799999999988875554
No 312
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.70 E-value=0.41 Score=43.03 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=27.2
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHH
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~ 85 (520)
...++.|.+.+...+. .+..+++.+|||+|||..
T Consensus 8 g~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 8 GTFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 3566778777777665 578999999999999985
No 313
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.54 E-value=0.12 Score=49.38 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=26.5
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhH
Q 010028 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 52 ~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~l 87 (520)
++..++..+.+...+..+.++++.||+|+|||..+.
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 445555555555555568999999999999998653
No 314
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.46 E-value=0.4 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=17.4
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHh
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.++++||+|+|||.++.. +...+.
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHh
Confidence 359999999999997643 444443
No 315
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.41 E-value=0.28 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=17.8
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+-+|++||.|+|||..+.+ +.+.+.
T Consensus 39 HA~LFtGP~GvGKTTLAri-LAkaLn 63 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRI-LAKSLN 63 (700)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHhc
Confidence 3469999999999987644 444443
No 316
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.40 E-value=0.6 Score=40.87 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=24.6
Q ss_pred hHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
|.++++.+...+.++ ...+++||.|+||+..+.. .+..+...
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~-~a~~ll~~ 46 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALA-FARALLCS 46 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHH-HHHHHC-T
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHH-HHHHHcCC
Confidence 445544444333233 4579999999999987643 44455443
No 317
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.26 E-value=0.35 Score=47.87 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
.+.+++|+||||||||... -+++..+. ...+++.+=.+.++.
T Consensus 161 ~~~nilI~G~tGSGKTTll-~aLl~~i~----~~~rivtiEd~~El~ 202 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMS-KTLISAIP----PQERLITIEDTLELV 202 (344)
T ss_pred cCCeEEEECCCCccHHHHH-HHHHcccC----CCCCEEEECCCcccc
Confidence 4789999999999999843 33443332 334677776777664
No 318
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.17 E-value=0.88 Score=42.56 Aligned_cols=86 Identities=16% Similarity=0.314 Sum_probs=62.4
Q ss_pred eeEEEeccccCHHHHHHHHHHHHcCC----ceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhh-cc-cCCCCC
Q 010028 399 IKIKEYSGLQRQSVRSKTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR-TA-RAGQLG 472 (520)
Q Consensus 399 ~~v~~~~~~~~~~~r~~~~~~f~~g~----~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR-~~-R~~~~g 472 (520)
+.+..++++.+... -++.++. ..|+|+-+.++||+-++++.+......+...+++.|| || .| |.|-.+
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~d 184 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYED 184 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCccccc
Confidence 56666665544322 2333332 6889999999999999999998888888888999998 45 33 666678
Q ss_pred cEEEEEecchHHHHHHHH
Q 010028 473 RCFTLLHKDEVKRFKKLL 490 (520)
Q Consensus 473 ~~i~~~~~~~~~~~~~~~ 490 (520)
.|-++.++.-...|..+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 899999887666555543
No 319
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.05 E-value=0.26 Score=55.20 Aligned_cols=34 Identities=24% Similarity=0.076 Sum_probs=24.4
Q ss_pred hhhHHHHHhhhCCCCC--------CC---CEEEECCCCChhhHHh
Q 010028 53 PVQVAVWQETIGPGLF--------ER---DLCINSPTGSGKTLSY 86 (520)
Q Consensus 53 ~~Q~~ai~~~~~~~~~--------~~---~~li~apTGsGKT~~~ 86 (520)
..|.+|+..+...+.. ++ .++++||||+|||..+
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 3799988887554321 12 3789999999999854
No 320
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.01 E-value=0.25 Score=52.19 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=17.8
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHH
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l 94 (520)
+.++++||.|+|||..+.. +.+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~-lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI-FAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHh
Confidence 4589999999999987643 33433
No 321
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.96 E-value=2 Score=42.01 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=34.6
Q ss_pred CCcchhhHHHHHhhhCCCCCCC---CEEEECCCCChhhHHhHHHHHHHHh
Q 010028 49 SSLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~---~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..++|+|..+|+.+...+..++ ..++.||.|+||+..+.. +.+.+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHh
Confidence 5688999999999887655553 589999999999986533 444443
No 322
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.86 E-value=1.2 Score=42.09 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.4
Q ss_pred CCEEEECCCCChhhHHhH
Q 010028 70 RDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~l 87 (520)
..+++.+|+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 569999999999998543
No 323
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=1.1 Score=43.15 Aligned_cols=54 Identities=28% Similarity=0.308 Sum_probs=35.2
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhc-cc-cccEEEEcCCHHHHHhHHhhhhc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRA-VR-CLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~-~~-~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
++-++++||+|+|||..+ -++.+++.-.- .+ ....++=.....|-..|+.+=.|
T Consensus 177 NRliLlhGPPGTGKTSLC-KaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgK 232 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLC-KALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGK 232 (423)
T ss_pred eeEEEEeCCCCCChhHHH-HHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhh
Confidence 455788999999999754 55666553211 11 22367777888888877666333
No 324
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.75 E-value=0.41 Score=51.10 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=21.4
Q ss_pred hHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHH
Q 010028 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll 88 (520)
|..++..+.+.+..+ .-++++||.|+|||..+.+
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 555444433332233 3469999999999997644
No 325
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.71 E-value=2.6 Score=43.91 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCChhhHHhH
Q 010028 68 FERDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~l 87 (520)
.++.+.+.||||+|||....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678889999999998653
No 326
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.22 Score=47.48 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=19.0
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
..|+++.+|||||||+.+. .++++++
T Consensus 97 KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 4679999999999998442 4544443
No 327
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.61 E-value=0.64 Score=45.26 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=25.6
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
..+++++|+|+|||..+-+ +.. ..+....+.+=+..|.+-+.+
T Consensus 163 pSmIlWGppG~GKTtlArl--ia~--tsk~~SyrfvelSAt~a~t~d 205 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARL--IAS--TSKKHSYRFVELSATNAKTND 205 (554)
T ss_pred CceEEecCCCCchHHHHHH--HHh--hcCCCceEEEEEeccccchHH
Confidence 5699999999999984322 221 111233445556666555544
No 328
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.52 E-value=0.55 Score=46.85 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=19.9
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.+.-++|+||||||||... ..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3678999999999999853 44555443
No 329
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.49 E-value=0.68 Score=46.88 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=47.2
Q ss_pred HHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHH
Q 010028 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118 (520)
Q Consensus 39 ~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~ 118 (520)
++.-++. ++..+-..|.+|. +... .|.. .|.+=.|||||...+.- ++.++.. .+.-+++|-+-|+.|+.++-
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa---~~~~-~G~q-rIrGLAGSGKT~~La~K-aa~lh~k-nPd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAA---FQSG-FGKQ-RIRGLAGSGKTELLAHK-AAELHSK-NPDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHH-HHhcccchhheee---eecC-Cchh-hhhcccCCCchhHHHHH-HHHHhcC-CCCceEEEEeehHHHHHHHH
Confidence 3333433 4567777888763 2211 2444 67899999999864432 3333332 46778999999999999954
Q ss_pred hh
Q 010028 119 SA 120 (520)
Q Consensus 119 ~~ 120 (520)
..
T Consensus 224 ~l 225 (660)
T COG3972 224 TL 225 (660)
T ss_pred HH
Confidence 44
No 330
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.36 E-value=1.5 Score=44.03 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=22.4
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+.+.+.||||+|||..... +...+.. .+.++.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaK-LA~~L~~---~GkkVglI~ 276 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK-MAWQFHG---KKKTVGFIT 276 (436)
T ss_pred cEEEEECCCCCcHHHHHHH-HHHHHHH---cCCcEEEEe
Confidence 4678999999999986544 2233332 344565554
No 331
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.33 E-value=0.52 Score=49.63 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=21.2
Q ss_pred hHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHH
Q 010028 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll 88 (520)
|..++..+.+.+..+ ..++++||.|+|||..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 444444433333233 2478999999999987644
No 332
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.33 E-value=0.37 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=17.7
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+..+++||.|+|||.++.. +++.+.
T Consensus 37 hayLf~Gp~G~GKTt~Ar~-LAk~L~ 61 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARI-FARALV 61 (535)
T ss_pred eeEEEECCCCCcHHHHHHH-HHHHhc
Confidence 3458999999999987643 444443
No 333
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.33 E-value=0.3 Score=40.80 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=27.1
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
+..+++.||+|+|||..... ++..+... ...++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~---~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP---GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC---CCCEEEECCEEccc
Confidence 46789999999999986433 33333221 12578887775543
No 334
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.26 E-value=0.51 Score=44.33 Aligned_cols=48 Identities=13% Similarity=-0.085 Sum_probs=32.3
Q ss_pred HhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 60 ~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
+.++..+..|.-++|.|++|+|||...+-.+.+.+.. .+.++++++.-
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~---~g~~vly~s~E 51 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKK---QGKPVLFFSLE 51 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCceEEEeCC
Confidence 3445545557788999999999998665544444433 25578888843
No 335
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.22 E-value=0.55 Score=44.03 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=34.6
Q ss_pred HHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 59 i~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
+++++. .+..|..++|.||+|+|||..++-.+...+. .+.++++++-. +-..|+
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~----~ge~~lyvs~e-e~~~~i 64 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGIYVALE-EHPVQV 64 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCCcEEEEEee-CCHHHH
Confidence 444444 3334677899999999999866554554442 34578888743 345554
No 336
>PRK06921 hypothetical protein; Provisional
Probab=90.14 E-value=0.76 Score=43.88 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=28.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
+..+++.|++|+|||..+ .+++..+... .+..++++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~--~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRK--KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhh--cCceEEEEEH-HHHHHH
Confidence 577999999999999854 3355555432 1445666654 455555
No 337
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.14 E-value=0.74 Score=43.80 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=33.0
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.++..+..+.=++|.|+||.|||..++-.+.+.+... +..+++++.-
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~SlE 57 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSLE 57 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEESS
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcCC
Confidence 4455666555567789999999999987655455444432 3578998864
No 338
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.11 E-value=0.28 Score=52.59 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
+.+|++||.|+|||..+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4579999999999986543
No 339
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=89.98 E-value=0.37 Score=51.20 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=47.5
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHH
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVN 118 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~ 118 (520)
...+|||.+-++.+-++. -+.+.+..++-+|||.+.+. ++-..... ....++++.||.+.|.++.
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~--~P~~~l~v~Pt~~~a~~~~ 79 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLN-WIGYSIDQ--DPGPMLYVQPTDDAAKDFS 79 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHh-hceEEEEe--CCCCEEEEEEcHHHHHHHH
Confidence 367899999888766532 36789999999999995544 33333322 2357999999999999863
No 340
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.91 E-value=2.3 Score=44.65 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=40.4
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~ 120 (520)
.+..+..-|=-.|||.. +.|++.-++.. ..+.++.+++.-|..++-++++
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s-~~gI~IGYvAHqKhvs~~Vf~E 251 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKN-IIGISIGYVAHQKHVSQFVLKE 251 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHh-hcCceEEEEeeHHHHHHHHHHH
Confidence 46677788999999985 57777777764 5788999999999988887776
No 341
>PHA02244 ATPase-like protein
Probab=89.88 E-value=0.2 Score=49.48 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=17.2
Q ss_pred CCCCCEEEECCCCChhhHHh
Q 010028 67 LFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ 86 (520)
..+.++++.||||+|||..+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred hcCCCEEEECCCCCCHHHHH
Confidence 35789999999999999754
No 342
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.87 E-value=0.37 Score=47.41 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=28.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
+.++++.||||+|||..+ .++...+... +..|++++ ..++..+
T Consensus 183 ~~~Lll~G~~GtGKThLa-~aIa~~l~~~---g~~V~y~t-~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS-NCIAKELLDR---GKSVIYRT-ADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHH-HHHHHHHHHC---CCeEEEEE-HHHHHHH
Confidence 478999999999999854 3455555432 44566654 3556555
No 343
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.61 E-value=0.52 Score=50.38 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.4
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
+..+++||.|+|||.++..
T Consensus 39 hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARI 57 (576)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999997644
No 344
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.55 E-value=0.4 Score=50.97 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=21.3
Q ss_pred hHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHH
Q 010028 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll 88 (520)
|..++..+.+.+.++ +-.+++||.|+|||.++.+
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARI 54 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 444444433333233 2368999999999997654
No 345
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.53 E-value=0.39 Score=47.36 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=25.6
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
.+.+++|+|+||||||... -+++..+. ...+++.+=-+.++
T Consensus 159 ~~~nili~G~tgSGKTTll-~aL~~~ip----~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFT-NAALREIP----AIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHHH-HHHHhhCC----CCCeEEEecCCCcc
Confidence 4789999999999999853 33444332 23456554333333
No 346
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.46 E-value=2.1 Score=45.37 Aligned_cols=87 Identities=16% Similarity=0.310 Sum_probs=66.8
Q ss_pred HHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cccCC
Q 010028 362 LVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGM 438 (520)
Q Consensus 362 l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gi 438 (520)
+..++... .+.++....||-=-|+.-+..+.+.. +.++.|..+.|.+..+.|.++++...+|+++++|+|.+ +...+
T Consensus 301 ~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V 380 (677)
T COG1200 301 LLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV 380 (677)
T ss_pred HHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce
Confidence 33333333 67789999999765555544444322 23589999999999999999999999999999999987 55789
Q ss_pred CCCCCcEEEE
Q 010028 439 DVEGVNNVVN 448 (520)
Q Consensus 439 dl~~~~~VI~ 448 (520)
++.++-+||.
T Consensus 381 ~F~~LgLVIi 390 (677)
T COG1200 381 EFHNLGLVII 390 (677)
T ss_pred eecceeEEEE
Confidence 9998888774
No 347
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.37 E-value=0.93 Score=45.43 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=21.5
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCChhhHHh
Q 010028 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 56 ~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (520)
.++|+. .-++-.|+.++|.||+|+|||...
T Consensus 156 ~R~id~-~~pig~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 156 TRVLDL-FAPIGKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred eeeeee-EEEeCCCCEEEEECCCCCChhHHH
Confidence 344443 334556899999999999999753
No 348
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.28 E-value=3.7 Score=40.47 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=30.5
Q ss_pred chhhHHHHHhhhCCCCC-CCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 52 FPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 52 ~~~Q~~ai~~~~~~~~~-~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+|+|+.+|+.+...... ....++.||.|.|||..+.. +.+.+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHc
Confidence 68899999998865211 14589999999999987644 444443
No 349
>PRK09354 recA recombinase A; Provisional
Probab=89.24 E-value=1.3 Score=43.75 Aligned_cols=54 Identities=20% Similarity=0.076 Sum_probs=34.6
Q ss_pred HHHhhhC-C-CCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHH
Q 010028 58 VWQETIG-P-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (520)
Q Consensus 58 ai~~~~~-~-~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~ 115 (520)
.++.++. . +-.|+-+.|.+|+|+|||..++..+.+... .+.+++|+..-..+-.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchHH
Confidence 3455554 2 333566789999999999977554444332 3567888887655543
No 350
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=89.23 E-value=0.44 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=18.1
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+.+|+++|.|+|||.++.+ +.+.+.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~-lAr~L~ 62 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARI-LARSLN 62 (824)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHhC
Confidence 4479999999999997654 334343
No 351
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.23 E-value=1.4 Score=43.90 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=22.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
++.+++.||+|+|||....--+ ..+.. .+.++.+++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA-~~l~~---~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG-WQLLK---QNRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEEe
Confidence 4567899999999998654423 23322 234565554
No 352
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.19 E-value=0.52 Score=43.76 Aligned_cols=40 Identities=28% Similarity=0.163 Sum_probs=27.4
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.|..++|.||+|+|||..++-.+.+.+.+. +.++++++-.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~---ge~vlyvs~e 57 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF---GEKVLYVSFE 57 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH---T--EEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc---CCcEEEEEec
Confidence 356789999999999987665555555541 3468888743
No 353
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.14 E-value=0.83 Score=48.96 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=22.3
Q ss_pred hHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHH
Q 010028 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll 88 (520)
|..++..+.+.+.++ ...+++||.|+|||.++.+
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHH
Confidence 555544444333333 4588999999999997644
No 354
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.02 E-value=2.4 Score=38.40 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+++.||||+|||.+..- +..++... +.++.+++
T Consensus 4 i~lvGptGvGKTTt~aK-LAa~~~~~---~~~v~lis 36 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAK-LAARLKLK---GKKVALIS 36 (196)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHHT---T--EEEEE
T ss_pred EEEECCCCCchHhHHHH-HHHHHhhc---cccceeec
Confidence 67899999999997654 33333332 34555554
No 355
>PRK10867 signal recognition particle protein; Provisional
Probab=88.96 E-value=3.9 Score=41.85 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=24.2
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc--CCHHHH
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLA 114 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~--Pt~~La 114 (520)
+++++++|+|||....- +...+... .+.+++++. +.+.-+
T Consensus 103 I~~vG~~GsGKTTtaak-LA~~l~~~--~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGK-LAKYLKKK--KKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEECCCCCcHHHHHHH-HHHHHHHh--cCCcEEEEEccccchHH
Confidence 67899999999987644 23333322 244566654 445443
No 356
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.92 E-value=1.8 Score=41.89 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=21.5
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+++.+..|+|||...-- +..++.+ .+.++++.+
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~---~g~~VllaA 174 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQ---QGKSVLLAA 174 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHH---CCCeEEEEe
Confidence 67799999999997432 3333333 355666655
No 357
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.90 E-value=1.2 Score=49.97 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=23.6
Q ss_pred hhhHHHHHhhhCCCC------C--CC---CEEEECCCCChhhHHh
Q 010028 53 PVQVAVWQETIGPGL------F--ER---DLCINSPTGSGKTLSY 86 (520)
Q Consensus 53 ~~Q~~ai~~~~~~~~------~--~~---~~li~apTGsGKT~~~ 86 (520)
-.|.+|+..+...+. . ++ .++++||||+|||..+
T Consensus 569 ~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred cChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 468888777655431 1 12 3789999999999864
No 358
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.81 E-value=1.1 Score=42.36 Aligned_cols=28 Identities=25% Similarity=0.058 Sum_probs=21.3
Q ss_pred HHHHhhhCCCCCCCCEEEECCCCChhhHH
Q 010028 57 AVWQETIGPGLFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 57 ~ai~~~~~~~~~~~~~li~apTGsGKT~~ 85 (520)
++|+.+. ++..|+.++|.+|.|+|||..
T Consensus 5 ~~id~~~-~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 5 RVVDLFA-PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred hheeeec-ccCCCCEEEEECCCCCCHHHH
Confidence 4555433 455689999999999999973
No 359
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=88.78 E-value=1.1 Score=45.49 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=34.3
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH-HHHhHHhh
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVNSA 120 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~-La~q~~~~ 120 (520)
.++.|+.|||||.+...-++..+... .++.+++++-|+.. +..-++..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~ 52 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKD 52 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHH
Confidence 57799999999998877777666653 13567898988866 44443333
No 360
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.78 E-value=0.61 Score=33.25 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=18.2
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+...+|.+++|+|||.. +-+++.++
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHHH
Confidence 35689999999999984 44454443
No 361
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.55 E-value=2.8 Score=37.54 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=18.0
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..+++.||.|+|||..+.. +...+.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~-~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA-LAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHc
Confidence 5589999999999986533 444443
No 362
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.55 E-value=0.87 Score=43.42 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=29.8
Q ss_pred HHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHH
Q 010028 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 43 l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l 94 (520)
+.+.| +.+.|.+.+..++.. .+..++|.+|||||||... ..++..+
T Consensus 59 l~~lg---~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLG---LKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcC---CCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 44444 355577777666541 2456899999999999864 3354544
No 363
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.55 E-value=0.52 Score=50.14 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.7
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
..+|+++|.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999997644
No 364
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.52 E-value=3.7 Score=40.32 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=32.3
Q ss_pred cchhhHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.+|||+.+|+.+...+.++ ...+++||.|.||+..+.. +.+.+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHc
Confidence 4688888888887765554 4578999999999986543 444444
No 365
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.52 E-value=0.39 Score=51.11 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=45.3
Q ss_pred HHHHcCCceEEEEecccccCCCCCCCcEEE--------EccCCCCHHHHHHHHhhcccCCC-CCcEEEEE
Q 010028 418 KAFREGKIQVLVSSDAMTRGMDVEGVNNVV--------NYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLL 478 (520)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI--------~~~~p~s~~~~~Q~~GR~~R~~~-~g~~i~~~ 478 (520)
++|-.|+-.|-|-+.+.+.||.++.-..|+ -+.+|||.+.-+|..||+.|.++ .+--++|+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 345567777888888999999888544433 46799999999999999999885 34344443
No 366
>PHA00012 I assembly protein
Probab=88.52 E-value=1.6 Score=42.30 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=18.6
Q ss_pred EEEECCCCChhhHHhHHHHHHHHh
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~ 95 (520)
-+|.|..|+|||+.++.-+...+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 478999999999987765665544
No 367
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.49 E-value=1.2 Score=44.73 Aligned_cols=37 Identities=22% Similarity=0.070 Sum_probs=23.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEE
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil 107 (520)
+..++|+||||||||... ..+++.+... .+..+++.+
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~~~-~~~~~Ivti 185 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCGET-YPDRKIVTY 185 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHHhc-CCCceEEEE
Confidence 567899999999999863 4455555432 122345554
No 368
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.48 E-value=0.33 Score=49.23 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=35.8
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
++++.||||+|||.++++|.+-. ....++|.=|.-++....+...++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~------~~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT------WPGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc------CCCCEEEEccchhHHHHHHHHHHH
Confidence 46899999999999988886542 134688888999998876655443
No 369
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.41 E-value=0.58 Score=49.78 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.5
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
+..+++||.|+|||.++-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999987543
No 370
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.29 E-value=0.62 Score=49.72 Aligned_cols=65 Identities=22% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCcchhhHHHHHhhhCC----CCCC-C-CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 49 SSLFPVQVAVWQETIGP----GLFE-R-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~----~~~~-~-~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
..++..|.+|+--+... +-+| + -++|-...|.||-....-.|+.+.++. ..++|.+.-+.+|-.+
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG---RKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG---RKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc---cceeEEEEeccccccc
Confidence 46777787776443321 1123 2 256655556555443333356666553 4578988888777655
No 371
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.11 E-value=2.3 Score=42.56 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=27.1
Q ss_pred hhHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 54 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 54 ~Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
.|.++...+.+.+.++ ...+++||.|+||+..+. .+.+.++.
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~~A~~Llc 67 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAY-RMARFLLA 67 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHH-HHHHHHhC
Confidence 4556655554444344 358999999999998753 35555553
No 372
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=88.08 E-value=0.65 Score=41.51 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=26.7
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
++|.||+|+|||...+-.+...+. .+.++++++.. +..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----~g~~v~~~s~e-~~~~~ 41 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----RGEPGLYVTLE-ESPEE 41 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----CCCcEEEEECC-CCHHH
Confidence 688999999999866544444332 34578888754 33455
No 373
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.07 E-value=0.79 Score=48.70 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.6
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
+..+++||.|+|||.++..
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999987643
No 374
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.83 E-value=0.71 Score=41.92 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=22.2
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
++|.||||||||... ..++..+... .+.+++.+--.
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~~ 39 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIEDP 39 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcCC
Confidence 688999999999864 3344444322 23355555443
No 375
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.76 E-value=1.8 Score=47.94 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=25.1
Q ss_pred CcchhhHHHHHhhhCCCC--CCCCEEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~--~~~~~li~apTGsGKT~~~ 86 (520)
.|--.|.+-+..++..+. ...++++.||+|+|||..+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 455566666555554221 2368999999999999864
No 376
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.75 E-value=0.096 Score=56.28 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=69.2
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhc-----cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhc
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQF 145 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~-----~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (520)
-.++....|.|||...+..++..-.+.. ......|+++|+ ++..|
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~q----------------------------- 203 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQ----------------------------- 203 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHH-----------------------------
Confidence 3688999999999977655544332221 244568999996 55666
Q ss_pred ccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHH-
Q 010028 146 DSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD- 224 (520)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~- 224 (520)
+.+.+++......+.+..++|... .. .....++|+++||+.+..
T Consensus 204 ----------W~~elek~~~~~~l~v~v~~gr~k---d~----------------------~el~~~dVVltTy~il~~~ 248 (674)
T KOG1001|consen 204 ----------WKTELEKVTEEDKLSIYVYHGRTK---DK----------------------SELNSYDVVLTTYDILKNS 248 (674)
T ss_pred ----------HHHHHhccCCccceEEEEeccccc---cc----------------------chhcCCceEEeeHHHhhcc
Confidence 444456666666788888887111 11 112456899999999863
Q ss_pred HHhcCCCcccccccEEEeehHHHHH
Q 010028 225 HINATRGFTLEHLCYLVVDETDRLL 249 (520)
Q Consensus 225 ~l~~~~~~~~~~~~~lViDEah~l~ 249 (520)
.+.. -..-.+|+||+|.+.
T Consensus 249 ~l~~------i~w~Riildea~~ik 267 (674)
T KOG1001|consen 249 PLVK------IKWLRIVLDEAHTIK 267 (674)
T ss_pred cccc------eeEEEEEeccccccC
Confidence 2221 224579999999653
No 377
>PRK10436 hypothetical protein; Provisional
Probab=87.70 E-value=0.65 Score=47.96 Aligned_cols=42 Identities=31% Similarity=0.521 Sum_probs=28.4
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+.+.|.+.+..++. ..+.-++++||||||||... ..++..+.
T Consensus 202 ~~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 34556666666554 13567899999999999864 45666543
No 378
>PRK14701 reverse gyrase; Provisional
Probab=87.49 E-value=2.2 Score=51.04 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=55.2
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC---CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~---~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (520)
.+.++||.+|+++-+..+++.|+..+. .+..+..+||+++..++.+.++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 466899999999999999998887542 2467788999999999999999999999999999974
No 379
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.44 E-value=0.66 Score=49.76 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.4
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
+.++++||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4468999999999987644
No 380
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=87.36 E-value=0.41 Score=49.97 Aligned_cols=48 Identities=31% Similarity=0.383 Sum_probs=37.0
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
.++++.||||||||..+++|.+- .. ...++|.=|.-+|....+..+++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~---~~s~iV~D~KgEl~~~t~~~r~~ 92 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NY---PGSMIVTDPKGELYEKTAGYRKK 92 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hc---cCCEEEEECCCcHHHHHHHHHHH
Confidence 46999999999999999888653 21 22688888999998887765554
No 381
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.33 E-value=2.6 Score=44.48 Aligned_cols=71 Identities=18% Similarity=0.408 Sum_probs=56.4
Q ss_pred EEEEecCHHHHHHHHHHHhhcCCC--ceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----ccccC-CCCCCCcE
Q 010028 374 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGVNN 445 (520)
Q Consensus 374 ~lIf~~s~~~~~~l~~~L~~~~~~--~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-idl~~~~~ 445 (520)
+||++||++-|..+++.+...+.. ++.+..++|+++...+. ..++.| .+|||+|+ .+.+| +|+.++..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999998876533 47788999998876555 444446 99999995 45666 88888888
Q ss_pred EEE
Q 010028 446 VVN 448 (520)
Q Consensus 446 VI~ 448 (520)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 774
No 382
>PRK13531 regulatory ATPase RavA; Provisional
Probab=87.20 E-value=0.6 Score=48.00 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=28.1
Q ss_pred hhHHHHHhhhCCCCCCCCEEEECCCCChhhHHh
Q 010028 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 54 ~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (520)
.|.+++..+...+..+.++++.||+|+|||..+
T Consensus 24 gre~vI~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 24 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred CcHHHHHHHHHHHccCCCEEEECCCChhHHHHH
Confidence 577777777777778999999999999999854
No 383
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.13 E-value=0.33 Score=45.24 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.2
Q ss_pred EEEECCCCChhhHH
Q 010028 72 LCINSPTGSGKTLS 85 (520)
Q Consensus 72 ~li~apTGsGKT~~ 85 (520)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 384
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.12 E-value=0.5 Score=50.42 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=39.7
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
..+++.||||||||..+++|.+-.. +..++|+=|.-++....+...++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5689999999999999999976532 236888889999998887776653
No 385
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.11 E-value=0.92 Score=43.14 Aligned_cols=38 Identities=24% Similarity=0.120 Sum_probs=26.8
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
.+.-++|.|++|+|||..++-.+.+.+. .+.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~----~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS----RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----CCCcEEEEEe
Confidence 4667899999999999876554444332 3457888873
No 386
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.10 E-value=2 Score=46.92 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=15.2
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
+-+.+.||||+|||.+...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4578899999999987544
No 387
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=87.09 E-value=2.3 Score=42.54 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=17.2
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHH
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l 94 (520)
+..++.||+|+|||..+.. +.+.+
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~-la~~l 60 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI-FAKAL 60 (355)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHh
Confidence 4578999999999986533 44433
No 388
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.02 E-value=3.1 Score=41.15 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=33.5
Q ss_pred CcchhhHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.++|||..+|+.+.+.+.++ ...++.||.|.||+..+.. ..+.+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHc
Confidence 35789999999988765554 3588999999999987643 444443
No 389
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.00 E-value=1.9 Score=43.17 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=29.3
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+.+.=.++|+.+. ++-.|+..+|.||.|+|||..+ ..+...+.
T Consensus 152 ~~~~~~rvID~l~-PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 152 PEDLSTRIIDLIA-PIGKGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred Ccccceeeeeeec-ccccCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 4555567777644 5557899999999999999743 33444443
No 390
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=86.97 E-value=1.2 Score=51.85 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=46.1
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhh-ccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~-~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.+.+++|.|..|||||.+...-++..+... +....++|++|-|++-+..+.+++.+-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 478999999999999998777777777764 245567999999999999987776554
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=86.77 E-value=8.6 Score=39.26 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=25.1
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc--CCHHHHHh
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQ 116 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~--Pt~~La~q 116 (520)
-+.++|++|+|||..+.- +...+.. .+.++++++ +.+.-+.+
T Consensus 102 vi~lvG~~GvGKTTtaaK-LA~~l~~---~G~kV~lV~~D~~R~aA~e 145 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK-LAYYYQR---KGFKPCLVCADTFRAGAFD 145 (429)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHH---CCCCEEEEcCcccchhHHH
Confidence 367899999999986543 2223332 345677665 44544333
No 392
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=86.70 E-value=1.5 Score=46.90 Aligned_cols=63 Identities=29% Similarity=0.130 Sum_probs=45.8
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc---cccccEEEEcCCHHHHHhH
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~---~~~~~vlil~Pt~~La~q~ 117 (520)
.+-.-|..|.+..+. .+--++++|+|+|||++.+. +++.++... .....++++|-|..-++|.
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlk-av~tLL~n~s~~~~~epIlvvC~Tnhavdq~ 443 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLK-AVDTLLLNSSGYTEPEPILVVCLTNHAVDQY 443 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHH-HHHHHHhcccccccccceeeeehhhHHHHHH
Confidence 455568888776554 67789999999999999877 444444321 2345699999998888885
No 393
>PF12846 AAA_10: AAA-like domain
Probab=86.51 E-value=1.1 Score=43.33 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=29.4
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHH
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~ 115 (520)
.+++|.|+||+|||.... .++..+.. .+..++++=|.-+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~---~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR---RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH---cCCCEEEEcCCchHHH
Confidence 578999999999998765 45554443 3456788767655443
No 394
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.42 E-value=0.57 Score=44.88 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=27.7
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
.+.+++++|+||||||... ..++..+... ..+++.+=.+.++
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHTT---TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhcccc---ccceEEeccccce
Confidence 4789999999999999864 4455444322 2467776655554
No 395
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=86.38 E-value=2 Score=39.89 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=23.8
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
.++.++++||+|+|||..+.. +...+.. .+..++++..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a-i~~~~~~---~~~~~~~i~~ 78 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA-LVADASY---GGRNARYLDA 78 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHh---CCCcEEEEeh
Confidence 356799999999999985432 3322222 3445666654
No 396
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.33 E-value=3.2 Score=43.01 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=58.4
Q ss_pred HHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc
Q 010028 88 LPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV 167 (520)
Q Consensus 88 l~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (520)
..++.... .....++||.|-|+--|+++...+++.
T Consensus 330 ~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~------------------------------------------- 364 (519)
T KOG0331|consen 330 GKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRK------------------------------------------- 364 (519)
T ss_pred HHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhc-------------------------------------------
Confidence 33444444 235668999999999998854433221
Q ss_pred cceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEe
Q 010028 168 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 242 (520)
Q Consensus 168 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 242 (520)
++++.++||+.+..++...+.. .....+.|+|+|.- - .+.+++.++++||-
T Consensus 365 ~~~a~~iHGd~sQ~eR~~~L~~-----------------FreG~~~vLVATdV------A-aRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 365 GWPAVAIHGDKSQSERDWVLKG-----------------FREGKSPVLVATDV------A-ARGLDVPDVDLVIN 415 (519)
T ss_pred CcceeeecccccHHHHHHHHHh-----------------cccCCcceEEEccc------c-cccCCCccccEEEe
Confidence 4788999999988777655432 22356799999932 2 24688899999984
No 397
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.12 E-value=4.2 Score=41.57 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=23.9
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc--CCHHHH
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLA 114 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~--Pt~~La 114 (520)
-+++++++|+|||.++.- ++..+... .+.+++++. +.+.-+
T Consensus 101 vi~~vG~~GsGKTTtaak-LA~~l~~~--~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK-LAYYLKKK--QGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEECCCCCcHHHHHHH-HHHHHHHh--CCCeEEEEeccccchHH
Confidence 367899999999997644 22333221 234565554 344433
No 398
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=85.99 E-value=0.65 Score=47.08 Aligned_cols=17 Identities=47% Similarity=0.679 Sum_probs=14.9
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.++++.+|||+|||..+
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999854
No 399
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.95 E-value=1.4 Score=43.56 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=36.1
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
+.+.+.+.+..++. .+.++++.++||+|||... -.++..+ . +..+++.+-.+.++.
T Consensus 163 ~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTll-~al~~~i-~---~~~riv~iEd~~El~ 218 (340)
T TIGR03819 163 FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTLL-SALLALV-A---PDERIVLVEDAAELR 218 (340)
T ss_pred CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHH-HHHHccC-C---CCCcEEEECCcceec
Confidence 55666677666655 4689999999999999843 2233322 2 234677766666663
No 400
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=85.75 E-value=0.37 Score=43.61 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=13.3
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.+.++++.+|.|+|||..
T Consensus 21 G~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp CC--EEEES-CCCTHHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 468999999999999974
No 401
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.66 E-value=7.8 Score=39.65 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=55.5
Q ss_pred cEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec--ccc----cCCCCCCCcE
Q 010028 373 KCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMT----RGMDVEGVNN 445 (520)
Q Consensus 373 k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~----~Gidl~~~~~ 445 (520)
-.+|.|+|++-|..+...-+.++ ..++++..+||+++..+...-++ -..-++|||+ +++ .++|+.++++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 46889999999988877766653 45689999999999988876665 3567899995 232 3789998888
Q ss_pred EEE
Q 010028 446 VVN 448 (520)
Q Consensus 446 VI~ 448 (520)
+|.
T Consensus 374 LV~ 376 (731)
T KOG0339|consen 374 LVL 376 (731)
T ss_pred EEE
Confidence 774
No 402
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.66 E-value=1.5 Score=42.87 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
+..+.+.|...+..++. .+++++++++||||||.. +.+++..+ .+..+++.+=-+.++.
T Consensus 125 ~gt~~~~~~ayL~~~ie---~~~siii~G~t~sGKTt~-lnall~~I----p~~~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIE---ARKSIIICGGTASGKTTL-LNALLDFI----PPEERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHH---cCCcEEEECCCCCCHHHH-HHHHHHhC----CchhcEEEEecccccc
Confidence 44677777766555554 589999999999999984 23344322 2344677776666654
No 403
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.63 E-value=0.97 Score=47.13 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=23.2
Q ss_pred HHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 460 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 460 Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
+++-++-|....|..+..+.....+.+..=++.+.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (486)
T PRK14953 405 AILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKK 440 (486)
T ss_pred HHHhhhhhhhhcCceEEEecccHHHHHHHHHHHHHH
Confidence 444566666678888888777666666555554443
No 404
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.59 E-value=1.2 Score=41.78 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEE
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil 107 (520)
..+++.|++|+|||..+ .++...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~~---g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLLR---GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHhc---CCeEEEE
Confidence 46899999999999864 3355555432 3456665
No 405
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=85.31 E-value=1.4 Score=43.10 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.+.++++.||||||||..
T Consensus 143 ~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578999999999999984
No 406
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=85.23 E-value=0.6 Score=47.03 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=15.1
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
+++++.||||+|||..+
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999854
No 407
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=85.20 E-value=5.2 Score=39.19 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=18.3
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHh
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.+++.||.|+|||.++. .+.+.+.
T Consensus 26 alL~~Gp~G~Gktt~a~-~lA~~l~ 49 (325)
T COG0470 26 ALLFYGPPGVGKTTAAL-ALAKELL 49 (325)
T ss_pred eeeeeCCCCCCHHHHHH-HHHHHHh
Confidence 49999999999999763 3555454
No 408
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=85.05 E-value=11 Score=38.78 Aligned_cols=127 Identities=14% Similarity=0.231 Sum_probs=87.6
Q ss_pred HHhcCCCcEEEEecCHHHHHHHHHHHhhc-CCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----cccC-C
Q 010028 366 LQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M 438 (520)
Q Consensus 366 ~~~~~~~k~lIf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~G-i 438 (520)
++...+ ++|+..||+--+..=+..+++. +.+...+..+.|..++.+|.+... +.+|+++|+- +-.| +
T Consensus 54 l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Gri 127 (542)
T COG1111 54 LRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRI 127 (542)
T ss_pred HHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCcc
Confidence 344444 8999999998777777666653 344567889999999999987763 4689999953 2345 7
Q ss_pred CCCCCcEEEEccCCCCH--HHHHHHHhhcccCCCCCcEE--EEEecchHHHHHHHHHHhcCCCC
Q 010028 439 DVEGVNNVVNYDKPAYI--KTYIHRAGRTARAGQLGRCF--TLLHKDEVKRFKKLLQKADNDSC 498 (520)
Q Consensus 439 dl~~~~~VI~~~~p~s~--~~~~Q~~GR~~R~~~~g~~i--~~~~~~~~~~~~~~~~~~~~~~~ 498 (520)
|+.++.++|.--..... -.|.+-+-...|..+.-.++ +=-+.++.++++++++++.-.+.
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~v 191 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKV 191 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceE
Confidence 99999998764443332 25666666666655332222 23345899999999999876554
No 409
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.99 E-value=1 Score=48.04 Aligned_cols=46 Identities=33% Similarity=0.491 Sum_probs=30.3
Q ss_pred HHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHH
Q 010028 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 43 l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l 94 (520)
+.+.|+ .+.|.+.+..++.. ...-++++||||||||... ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~--~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHK--PQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 344444 45566666665541 2466889999999999874 4566655
No 410
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=84.85 E-value=3.7 Score=47.69 Aligned_cols=79 Identities=9% Similarity=0.283 Sum_probs=58.1
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC-Ccee---EEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cccCCC-CC-C
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIK---IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMD-VE-G 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~~---v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gid-l~-~ 442 (520)
.+.+++|.+|+++-+..+++.++.... .+.. +..+||+++..++....+.+.+|..+|||+|+. +...++ +. .
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 367899999999999999988877542 1222 346899999999998999999999999999964 221111 12 5
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
++++|.
T Consensus 200 ~~~iVv 205 (1171)
T TIGR01054 200 FDFIFV 205 (1171)
T ss_pred CCEEEE
Confidence 667664
No 411
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=84.72 E-value=2.9 Score=46.54 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=15.2
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999854
No 412
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=84.51 E-value=5.5 Score=39.00 Aligned_cols=45 Identities=24% Similarity=0.226 Sum_probs=32.8
Q ss_pred CcchhhHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.++|+|...|+.+...+..+ ...++.||.|.||+..+.. +.+.+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHc
Confidence 56789999999887655444 3689999999999976533 444443
No 413
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=84.41 E-value=1.1 Score=40.20 Aligned_cols=58 Identities=24% Similarity=0.121 Sum_probs=32.1
Q ss_pred hhCCCC-CCCCEEEECCCCChhhHHhHHHHHHHHhhhc------cccccEEEEcCCHHHHHhHHhh
Q 010028 62 TIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 62 ~~~~~~-~~~~~li~apTGsGKT~~~ll~il~~l~~~~------~~~~~vlil~Pt~~La~q~~~~ 120 (520)
++..+. .|.-+++.||+|+|||...+--+.+.+.... ..+.+++++..-.. ..++.++
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~r 88 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARR 88 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHH
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHH
Confidence 444444 3566899999999999876554444442111 14557888876544 4454333
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.37 E-value=1.2 Score=44.27 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=25.8
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
+..++|+||||||||... ..++..+... ...+++.+--..+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~--~~~~i~tiEdp~E 162 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN--AAGHIITIEDPIE 162 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC--CCCEEEEEcCChh
Confidence 577999999999999864 3345444322 2345666544334
No 415
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=84.27 E-value=1.8 Score=40.17 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=29.6
Q ss_pred HHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 59 i~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
++.++. .+..|..++|.+++|+|||..++..+.+.+. ++.++++++-
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~----~g~~~~~is~ 56 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR----DGDPVIYVTT 56 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh----cCCeEEEEEc
Confidence 444443 3445778999999999999865443333332 2346777764
No 416
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=84.20 E-value=9.6 Score=38.12 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHhhcccCCCCCc-EEEEEecchHHHHHHHHHHhcCCCCCc
Q 010028 451 KPAYIKTYIHRAGRTARAGQLGR-CFTLLHKDEVKRFKKLLQKADNDSCPI 500 (520)
Q Consensus 451 ~p~s~~~~~Q~~GR~~R~~~~g~-~i~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (520)
.|.+...|+-.+.|....--.+. .+.....++..+|-.+++.+...++..
T Consensus 272 ~plg~aDYlaLA~~F~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~v~L 322 (362)
T PF03969_consen 272 RPLGAADYLALAERFHTIFISDVPVLSESDRNEARRFITLIDVLYDRKVKL 322 (362)
T ss_pred cCCCHHHHHHHHHhCCEEEEcCCCCcccCChhHHHHHHHHHHHHhhCCCcE
Confidence 67888888888877532110110 111224466777778888777766644
No 417
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.90 E-value=1 Score=45.24 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=43.0
Q ss_pred ccCccCCc-ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHH
Q 010028 12 LPWMRSPV-DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90 (520)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~i 90 (520)
.+|.+.+- |-++|+.+-+++- +...|.+-+..| ...--.|...- .+ -.+-.|+.||+|+|||. ++++
T Consensus 187 ~~W~~v~f~HpstF~TlaMd~~--~K~~I~~Dl~~F-~k~k~~YkrvG-----ka--wKRGYLLYGPPGTGKSS--~IaA 254 (457)
T KOG0743|consen 187 GEWRSVGFPHPSTFETLAMDPD--LKERIIDDLDDF-IKGKDFYKRVG-----KA--WKRGYLLYGPPGTGKSS--FIAA 254 (457)
T ss_pred CcceecCCCCCCCccccccChh--HHHHHHHHHHHH-HhcchHHHhcC-----cc--hhccceeeCCCCCCHHH--HHHH
Confidence 34775544 4578888875432 556666666654 12222233211 11 14668999999999997 3555
Q ss_pred HHHHhhh
Q 010028 91 VQTLSNR 97 (520)
Q Consensus 91 l~~l~~~ 97 (520)
++..++.
T Consensus 255 mAn~L~y 261 (457)
T KOG0743|consen 255 MANYLNY 261 (457)
T ss_pred HHhhcCC
Confidence 6555543
No 418
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=83.76 E-value=1.2 Score=48.34 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=37.3
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
.++++.||||||||..+++|-+-.. ...++|+=|.-++........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC------CCCEEEEeCCchHHHHHHHHHHh
Confidence 5799999999999999988865421 23688888999888776665544
No 419
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=83.70 E-value=1.8 Score=40.25 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
++.+.|.|.||||||... ..++..+.+ ..+.+++++=|.-+=
T Consensus 23 ~~H~~I~G~TGsGKS~~~-~~ll~~l~~--~~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV-KVLLEELLK--KKGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHh--cCCCCEEEEcCCCcc
Confidence 588999999999999875 446666663 245578888787543
No 420
>PRK06904 replicative DNA helicase; Validated
Probab=83.69 E-value=11 Score=39.30 Aligned_cols=55 Identities=13% Similarity=-0.070 Sum_probs=33.2
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.++.+...+..|.=++|.|.||.|||..++- ++.++... .+..++|++.-.. ..|
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafaln-ia~~~a~~--~g~~Vl~fSlEMs-~~q 264 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMN-LCENAAMA--SEKPVLVFSLEMP-AEQ 264 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHH-HHHHHHHh--cCCeEEEEeccCC-HHH
Confidence 4555555555566688899999999985533 33333221 2446778765433 444
No 421
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.62 E-value=5.4 Score=41.40 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=73.1
Q ss_pred CCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhh
Q 010028 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQV 156 (520)
Q Consensus 77 pTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (520)
-.++||+..-++++.+.+... -.+.+||.+-+.+-|.|++.++
T Consensus 365 lvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L----------------------------------- 407 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEEL----------------------------------- 407 (593)
T ss_pred heeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHh-----------------------------------
Confidence 357888888777666655443 5678999999999999965553
Q ss_pred HHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCccccc
Q 010028 157 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 236 (520)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~ 236 (520)
. ...++++...+|+.+..++-..+.+ .-.....++||| +++.+ ++++..
T Consensus 408 ----~---~~~~i~v~vIh~e~~~~qrde~~~~-----------------FR~g~IwvLicT-----dll~R--GiDf~g 456 (593)
T KOG0344|consen 408 ----E---IYDNINVDVIHGERSQKQRDETMER-----------------FRIGKIWVLICT-----DLLAR--GIDFKG 456 (593)
T ss_pred ----h---hccCcceeeEecccchhHHHHHHHH-----------------HhccCeeEEEeh-----hhhhc--cccccC
Confidence 2 2347899999999877666544332 222456899999 44444 489999
Q ss_pred ccEEEeehHHH
Q 010028 237 LCYLVVDETDR 247 (520)
Q Consensus 237 ~~~lViDEah~ 247 (520)
+.+||.+++-.
T Consensus 457 vn~VInyD~p~ 467 (593)
T KOG0344|consen 457 VNLVINYDFPQ 467 (593)
T ss_pred cceEEecCCCc
Confidence 99999988764
No 422
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.34 E-value=0.71 Score=37.90 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.0
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
++|.|++|||||..+
T Consensus 2 I~I~G~~gsGKST~a 16 (121)
T PF13207_consen 2 IIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999854
No 423
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=83.34 E-value=1.8 Score=39.43 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
..+++|.|+||+|||......+.+.+........++.++=|.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 468999999999999876543443333222233445555454
No 424
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.24 E-value=4.6 Score=41.77 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
-++.++. .+..|.-++|.+++|+|||...+..+ ..+.. .+.+++|+..- +-..|
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a-~~~a~---~g~kvlYvs~E-Es~~q 136 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVA-CQLAK---NQMKVLYVSGE-ESLQQ 136 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHH-HHHHh---cCCcEEEEECc-CCHHH
Confidence 4555554 23345668999999999998765433 33322 23478888764 33455
No 425
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=83.12 E-value=2 Score=44.99 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=35.6
Q ss_pred HHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHh
Q 010028 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 119 (520)
Q Consensus 59 i~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~ 119 (520)
++.++. .+..+..++|.+|+|+|||..++-.+.+.+.+ .+.+++|++-- +-.+++.+
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~---~ge~~lyvs~e-E~~~~l~~ 67 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH---FDEPGVFVTFE-ESPQDIIK 67 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEe-cCHHHHHH
Confidence 344554 23346789999999999998766555544443 14468888743 33444333
No 426
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=83.07 E-value=5.5 Score=42.91 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC--CceEEEEecccccC
Q 010028 361 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSDAMTRG 437 (520)
Q Consensus 361 ~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~~~~G 437 (520)
++..+.+....++.||.||+. +++.+.+.|..+ .|.++|..|||.. .+|.++...+.++ .++|||+|=-+..|
T Consensus 438 FlayLkq~g~~gpHLVVvPsS-TleNWlrEf~kw-CPsl~Ve~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 438 FLAYLKQIGNPGPHLVVVPSS-TLENWLREFAKW-CPSLKVEPYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HHHHHHHcCCCCCcEEEecch-hHHHHHHHHHHh-CCceEEEeccCcH--HHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 333344444678899999964 466666667766 5779999999975 7899999999876 78999988554443
No 427
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=82.72 E-value=2.5 Score=38.89 Aligned_cols=47 Identities=17% Similarity=0.074 Sum_probs=29.9
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
.++.++. .+..+.-++|.|++|+|||..++-.+.. ... .+.+++++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~-~~~---~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE-TAG---QGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH-HHh---cCCeEEEEE
Confidence 4555664 2333566889999999999876554333 222 345788874
No 428
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.70 E-value=3.9 Score=43.81 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHhhccCCcEEEeCchHHHHHHhcCCC----cccccccEEEeehHHHHHHHHhhhhHHHHHHhhc
Q 010028 204 VLQELQSAVDILVATPGRLMDHINATRG----FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 265 (520)
Q Consensus 204 ~~~~~~~~~~Ili~Tp~~l~~~l~~~~~----~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~ 265 (520)
.......+++-.|+..+..+.-=+..+. .-+++..++|+|||=.-+|..-...++..+..+.
T Consensus 586 FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 586 FITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM 651 (716)
T ss_pred HHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh
Confidence 3344555667777765433221110000 1266778999999998777766666666665443
No 429
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=82.68 E-value=11 Score=33.92 Aligned_cols=76 Identities=16% Similarity=0.298 Sum_probs=52.7
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC-CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----cccC-CCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-MDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~G-idl~~ 442 (520)
.+.++||.+++..-+...+..++.... .+..+..++|+.+..+....+. +..+|+|+|.. +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999999988877766532 3467788898887655443332 57789999952 2222 56777
Q ss_pred CcEEEEc
Q 010028 443 VNNVVNY 449 (520)
Q Consensus 443 ~~~VI~~ 449 (520)
++++|.-
T Consensus 144 l~~lIvD 150 (203)
T cd00268 144 VKYLVLD 150 (203)
T ss_pred CCEEEEe
Confidence 8887643
No 430
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=82.57 E-value=1.8 Score=44.20 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=34.8
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNS 119 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~ 119 (520)
..++++|.|+||+|||.. +..++..+... +.+++|+=|.-++....++
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~---~~~~vi~D~kg~~~~~~~~ 88 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASIRAR---GDRAIIYDPNGGFVSKFYR 88 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHHHhc---CCCEEEEeCCcchhHhhcC
Confidence 357899999999999985 34455555433 4578888899887766543
No 431
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=82.40 E-value=2.6 Score=49.27 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=42.9
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.++++|.|+-|||||.+..--++..+... ....++++++-|+.-|..+.+++.+.
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~-~~~~~i~~~t~t~~aa~em~~Ri~~~ 64 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNG-VPPSKILCLTYTKAAAAEMQNRVFDR 64 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcC-CCCCeEEEEecCHHHHHHHHHHHHHH
Confidence 57899999999999998766666665543 34567999999999999876665443
No 432
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=82.34 E-value=1.2 Score=37.04 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.1
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999854
No 433
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.26 E-value=0.92 Score=43.45 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.+++++++||+|+|||..
T Consensus 32 ~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp CTEEEEEESSTTSSHHHH
T ss_pred cCCcEEEECCCCCchhHH
Confidence 478999999999999984
No 434
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.17 E-value=8.8 Score=36.74 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=22.4
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+-+.+.+|+|+|||.+..--+ ..+.. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA-~~l~~---~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA-NKLKK---QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHh---cCCEEEEEe
Confidence 346778999999998754422 33332 345677665
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=82.09 E-value=2.6 Score=39.25 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=26.6
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.+.-+++.+++|+|||..++-.+.. +.+ ++.++++++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~---~g~~~~yi~~e 61 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQ---NGYSVSYVSTQ 61 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh---CCCcEEEEeCC
Confidence 4677899999999999865443333 322 34578888744
No 436
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=82.05 E-value=2.6 Score=39.04 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=32.5
Q ss_pred HhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 60 QETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 60 ~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
+.++. .+..+.-++|.+++|+|||..++-.+...+. .+.++++++-.. -.+++
T Consensus 6 D~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~----~g~~~~y~s~e~-~~~~l 59 (224)
T TIGR03880 6 DEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK----NGEKAMYISLEE-REERI 59 (224)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECCC-CHHHH
Confidence 44443 2334677899999999999865444443332 245688887544 34553
No 437
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.92 E-value=3.7 Score=39.07 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=27.1
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
-+++.+|+|+||+..+ ..+... ...+.|-+.+-+|+..|
T Consensus 168 giLLyGPPGTGKSYLA-----KAVATE---AnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLA-----KAVATE---ANSTFFSVSSSDLVSKW 206 (439)
T ss_pred eEEEeCCCCCcHHHHH-----HHHHhh---cCCceEEeehHHHHHHH
Confidence 3899999999999743 222222 12588888888888764
No 438
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=81.87 E-value=1.7 Score=45.33 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=26.8
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHH
Q 010028 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 52 ~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l 94 (520)
.+.|.+.+..++.. .+.-++++||||||||... ..++..+
T Consensus 227 ~~~~~~~l~~~~~~--~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRR--PHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 56677777666651 1345789999999999864 3355544
No 439
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.73 E-value=0.8 Score=38.73 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.9
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
++++.||+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999854
No 440
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=81.66 E-value=2.2 Score=37.53 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
...+++|.+++|+||+..+
T Consensus 21 ~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLA 39 (168)
T ss_dssp STS-EEEECSTTSSHHHHH
T ss_pred CCCCEEEEcCCCCcHHHHH
Confidence 4588999999999999853
No 441
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=81.66 E-value=2 Score=40.89 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.++.++|.+++|+|||...+-.+.+.+. .+.++++++-. +...+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~----~ge~vlyvs~~-e~~~~ 65 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAR----EGEPVLYVSTE-ESPEE 65 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHh----cCCcEEEEEec-CCHHH
Confidence 4688999999999999865443443332 35568888754 33444
No 442
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=81.66 E-value=4 Score=39.91 Aligned_cols=55 Identities=20% Similarity=0.069 Sum_probs=34.6
Q ss_pred HHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 58 ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.++.++. .+-.|+-+.|.+|+|+|||..++-.+.+ ... .+.+++|+..-..+..+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~-~~~---~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE-AQK---AGGTAAFIDAEHALDPV 98 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH-HHH---cCCcEEEEcccchhHHH
Confidence 3455554 3334567889999999999876544433 332 35578888665554443
No 443
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=81.61 E-value=1.4 Score=39.16 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=21.0
Q ss_pred hhHHHHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 54 VQVAVWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 54 ~Q~~ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
.|.+.+...+. .-..++.++|.|+.|+|||... -.+++.+...
T Consensus 7 ~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll-~~~~~~~~~~ 51 (185)
T PF13191_consen 7 EEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL-RALLDRLAER 51 (185)
T ss_dssp HHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH-HHHHHHHHhc
Confidence 34444444442 1123467999999999999853 2345544443
No 444
>PF13479 AAA_24: AAA domain
Probab=81.52 E-value=3.1 Score=38.18 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=24.2
Q ss_pred cEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHH
Q 010028 213 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 249 (520)
Q Consensus 213 ~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~ 249 (520)
.+-|.+++.+.+.+.... .....++.||||-+..+.
T Consensus 46 ~i~i~s~~~~~~~~~~l~-~~~~~y~tiVIDsis~~~ 81 (213)
T PF13479_consen 46 VIPITSWEDFLEALDELE-EDEADYDTIVIDSISWLE 81 (213)
T ss_pred eeCcCCHHHHHHHHHHHH-hccCCCCEEEEECHHHHH
Confidence 344558888877664311 125678999999998864
No 445
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=81.49 E-value=3 Score=38.56 Aligned_cols=49 Identities=20% Similarity=0.124 Sum_probs=30.6
Q ss_pred HHHhhhCC-CCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~~-~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.++.. +..|.-++|.+++|+|||..++-.+.+.+ . .+.+++|+.-.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~-~---~~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA-K---NGKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH-H---CCCeEEEEECC
Confidence 34555643 33356689999999999987655444332 2 24567777643
No 446
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=81.46 E-value=1.4 Score=44.85 Aligned_cols=18 Identities=44% Similarity=0.663 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
..++++.||||+|||..+
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999854
No 447
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=81.43 E-value=2.2 Score=39.01 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=26.1
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
|.-+.|.||+|+|||..++..+..... .+.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~----~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR----QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 566899999999999876554433222 24567877654
No 448
>PRK04328 hypothetical protein; Provisional
Probab=81.25 E-value=2.3 Score=40.23 Aligned_cols=46 Identities=13% Similarity=0.017 Sum_probs=29.7
Q ss_pred HHhhhCC-CCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 59 i~~~~~~-~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
++.++.. +-.|..++|.+++|+|||..++-.+.+.+. .+.++++++
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~----~ge~~lyis 58 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGVYVA 58 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh----cCCcEEEEE
Confidence 4444443 224677899999999999866554444433 344677776
No 449
>PRK04841 transcriptional regulator MalT; Provisional
Probab=81.20 E-value=7.7 Score=44.23 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.6
Q ss_pred cEEEeehHHHHHHHHhhhhHHHHHHhhc
Q 010028 238 CYLVVDETDRLLREAYQAWLPTVLQLTR 265 (520)
Q Consensus 238 ~~lViDEah~l~~~~~~~~l~~i~~~~~ 265 (520)
-+||+|++|.+.+....+.+..++...+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 4899999998765665667777776643
No 450
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=81.18 E-value=1.3 Score=47.92 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
..++++.||||||||..+++|-+-.. ...+||+=|.-++....+...++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~------~~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW------PGSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC------CCCEEEEeCcchHHHHHHHHHHhC
Confidence 36899999999999999999966432 236888889998888777665553
No 451
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.01 E-value=8.2 Score=38.15 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c---
Q 010028 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M--- 434 (520)
Q Consensus 360 ~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~--- 434 (520)
..+..++.+...-.++|.+|+++-|..++..+...| ..+.++..+-|+++-. .+....+ .+..|||||+= +
T Consensus 118 PIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~--~q~~~L~--kkPhilVaTPGrL~dh 193 (476)
T KOG0330|consen 118 PILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM--LQANQLS--KKPHILVATPGRLWDH 193 (476)
T ss_pred HHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH--HHHHHhh--cCCCEEEeCcHHHHHH
Confidence 344555555555689999999999999999998874 4678999999999763 2333333 37789999952 2
Q ss_pred ---ccCCCCCCCcEEE
Q 010028 435 ---TRGMDVEGVNNVV 447 (520)
Q Consensus 435 ---~~Gidl~~~~~VI 447 (520)
..|+.+..+.+.|
T Consensus 194 l~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 194 LENTKGFSLEQLKFLV 209 (476)
T ss_pred HHhccCccHHHhHHHh
Confidence 3677777766655
No 452
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=80.96 E-value=1.2 Score=43.15 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCCEEEECCCCChhhHHhH
Q 010028 69 ERDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~l 87 (520)
.+-++|.||||||||..++
T Consensus 4 ~~ii~I~GpTasGKS~LAl 22 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILF 22 (300)
T ss_pred CcEEEEECCCccCHHHHHH
Confidence 4458889999999998553
No 453
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=80.95 E-value=1.2 Score=47.99 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=36.3
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
..+++.||||||||..+++|.+-. .+..++|+=|.-++....+...
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~------~~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLS------WGHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhh------CCCCEEEEeCcHHHHHHHHHHH
Confidence 679999999999999998887642 2346888889999877665554
No 454
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.95 E-value=0.97 Score=45.12 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=19.1
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
..++++.+|||+|||+.+. .++++++
T Consensus 226 KSNvLllGPtGsGKTllaq--TLAr~ld 251 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQ--TLARVLD 251 (564)
T ss_pred cccEEEECCCCCchhHHHH--HHHHHhC
Confidence 4679999999999998542 4555543
No 455
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.84 E-value=2.5 Score=41.29 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=27.2
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
++.+++.||+|+|||..+ .++...+.. .+..+.++.- -+++.+
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~~---~g~~v~~~~~-~~l~~~ 198 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELAK---KGVSSTLLHF-PEFIRE 198 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH---cCCCEEEEEH-HHHHHH
Confidence 467999999999999864 334444443 3445666643 245544
No 456
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=80.82 E-value=1.7 Score=46.86 Aligned_cols=49 Identities=20% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
...+++.||||+|||..+++|.+- + .+..++++=|.-++....+...++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL---~---~~gS~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTAL---K---WGGPLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhh---c---CCCCEEEEeCcHHHHHHHHHHHHH
Confidence 367899999999999999999653 2 233678888999988877776554
No 457
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=80.73 E-value=7 Score=40.33 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=31.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHh
Q 010028 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ 86 (520)
|++++ +.+|++++.+.+....-.+..| .+.++.+ ...+ +-+++.+|+|+|||+++
T Consensus 218 Fe~mG---IGGLd~EFs~IFRRAFAsRvFp--p~vie~l---Gi~HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 218 FESMG---IGGLDKEFSDIFRRAFASRVFP--PEVIEQL---GIKHVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred hhhcc---cccchHHHHHHHHHHHHhhcCC--HHHHHHc---CccceeeEEEECCCCCChhHHH
Confidence 56655 3467877776665421112111 2233221 1223 66899999999999853
No 458
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=80.72 E-value=11 Score=37.57 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=24.0
Q ss_pred EEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 73 li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
++.++.|+|||......++..+.... ....++++ |+...+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-~~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-PGRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-S--EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-CCcEEEEe-cCHHHHHH
Confidence 46799999999987776666665442 12345555 66554444
No 459
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=80.71 E-value=1.7 Score=46.62 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
..+++.||||+|||..+++|.+- . .+..++++=|.-++........++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL---~---~~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTAL---K---YGGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhh---c---CCCCEEEEEChHHHHHHHHHHHHHc
Confidence 67999999999999999999643 2 2346888889999988776665543
No 460
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=80.63 E-value=1.1 Score=45.67 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=20.2
Q ss_pred hhhCCCCCCCCEEEECCCCChhhHHh
Q 010028 61 ETIGPGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 61 ~~~~~~~~~~~~li~apTGsGKT~~~ 86 (520)
.++..+..++++++.+|+|+|||..+
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 33444445899999999999999865
No 461
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=80.57 E-value=6.4 Score=36.20 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCEEEECCCCChhhHHhH
Q 010028 70 RDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~l 87 (520)
.+++++||+|+|||..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 469999999999998543
No 462
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=80.47 E-value=4.7 Score=39.53 Aligned_cols=55 Identities=18% Similarity=0.059 Sum_probs=35.5
Q ss_pred HHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 58 ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.++.++. .+-.|+-+.|.+|+|+|||..++-.+.+. .. .+.+++|+..-..+-.+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~-~~---~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEA-QK---LGGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH-HH---cCCCEEEECccccHHHH
Confidence 4555554 23335668899999999998765544433 22 35578999876655544
No 463
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=80.46 E-value=1.2 Score=42.56 Aligned_cols=38 Identities=13% Similarity=-0.160 Sum_probs=25.2
Q ss_pred CcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhH
Q 010028 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~l 87 (520)
.+++.+.+++..+...+..+ ..+++.||+|+|||...-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 55666666766554332233 358899999999998543
No 464
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=80.31 E-value=1.1 Score=37.12 Aligned_cols=15 Identities=40% Similarity=0.432 Sum_probs=12.9
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
++|.|++|+|||.++
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999854
No 465
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=80.12 E-value=1.4 Score=43.73 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=14.9
Q ss_pred CEEEECCCCChhhHHhH
Q 010028 71 DLCINSPTGSGKTLSYA 87 (520)
Q Consensus 71 ~~li~apTGsGKT~~~l 87 (520)
.++++||+|+|||..+.
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998653
No 466
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=80.09 E-value=3.4 Score=38.55 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHhhhCC-CCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 59 i~~~~~~-~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
++.++.. +-.+.-+++.|++|+|||..+...+...+. .+.++++++-.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~----~g~~~~y~~~e 62 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK----QGKKVYVITTE 62 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh----CCCEEEEEEcC
Confidence 4444542 223566888999999999865444443332 34578888754
No 467
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=80.08 E-value=1.1 Score=45.52 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.|+++++.+|+|||||.
T Consensus 197 GgHnLl~~GpPGtGKTm 213 (490)
T COG0606 197 GGHNLLLVGPPGTGKTM 213 (490)
T ss_pred cCCcEEEecCCCCchHH
Confidence 47999999999999997
No 468
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=79.98 E-value=1.9 Score=39.68 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCCCCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
..|.-+.|.+|+|||||. ++.++.-+.+.
T Consensus 29 ~~Ge~vaI~GpSGSGKST--LLniig~ld~p 57 (226)
T COG1136 29 EAGEFVAIVGPSGSGKST--LLNLLGGLDKP 57 (226)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcccCC
Confidence 357778999999999998 56666666554
No 469
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.72 E-value=7 Score=42.73 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=24.8
Q ss_pred cEEEeehHHHHHHHHhhhhHHHHHHhhcc
Q 010028 238 CYLVVDETDRLLREAYQAWLPTVLQLTRS 266 (520)
Q Consensus 238 ~~lViDEah~l~~~~~~~~l~~i~~~~~~ 266 (520)
=++|+|+.|.+.+......++.++++.+.
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~ 159 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPE 159 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCC
Confidence 48999999999888888888888887664
No 470
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=79.56 E-value=2.5 Score=42.84 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=32.7
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~ 120 (520)
.+++++.|.||||||.+ +..++..+... +.+++|.=|+-+.....++.
T Consensus 15 ~~~~li~G~~GsGKT~~-i~~ll~~~~~~---g~~~iI~D~kg~~~~~f~~~ 62 (386)
T PF10412_consen 15 NRHILIIGATGSGKTQA-IRHLLDQIRAR---GDRAIIYDPKGEFTERFYRP 62 (386)
T ss_dssp GG-EEEEE-TTSSHHHH-HHHHHHHHHHT---T-EEEEEEETTHHHHHH--T
T ss_pred hCcEEEECCCCCCHHHH-HHHHHHHHHHc---CCEEEEEECCchHHHHhcCC
Confidence 68899999999999974 46677776654 44677777888877776664
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.47 E-value=6 Score=41.06 Aligned_cols=20 Identities=35% Similarity=0.425 Sum_probs=16.0
Q ss_pred CCCEEEECCCCChhhHHhHH
Q 010028 69 ERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll 88 (520)
+.-+.+.||||+|||.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 34578899999999997544
No 472
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=79.46 E-value=14 Score=36.09 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=21.3
Q ss_pred cEEEeehHHHHHHHHhhhhHHHHHHhhcc
Q 010028 238 CYLVVDETDRLLREAYQAWLPTVLQLTRS 266 (520)
Q Consensus 238 ~~lViDEah~l~~~~~~~~l~~i~~~~~~ 266 (520)
-..|+||+|.+......-.+.++++....
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlfDisqs 167 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLFDISQS 167 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHHHHHhh
Confidence 46788999987777666677777776554
No 473
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.43 E-value=6.8 Score=39.92 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=15.8
Q ss_pred CCCEEEECCCCChhhHHhH
Q 010028 69 ERDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~l 87 (520)
++-+.+.||||+|||....
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998654
No 474
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.28 E-value=12 Score=35.69 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=15.8
Q ss_pred CCEEEECCCCChhhHHhHH
Q 010028 70 RDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll 88 (520)
..+.+.+++|+|||..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 5688999999999986544
No 475
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=79.22 E-value=13 Score=40.08 Aligned_cols=71 Identities=13% Similarity=0.009 Sum_probs=54.6
Q ss_pred hcCCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcE
Q 010028 368 SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 445 (520)
Q Consensus 368 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~ 445 (520)
...+..++|.+++..-|...++.+.... ..++.+..+.|+++..+|+... ..+|+++|.. +-|.|+=.-+.
T Consensus 141 al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDyLrd~~ 212 (656)
T PRK12898 141 ALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDYLRDRL 212 (656)
T ss_pred hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhhccccc
Confidence 3467789999999999998888877643 3468999999999877666544 5689999987 66888775443
No 476
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=78.98 E-value=1.3 Score=41.27 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=15.2
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
-+++++.+|+|+|||.+
T Consensus 151 PknVLFyGppGTGKTm~ 167 (368)
T COG1223 151 PKNVLFYGPPGTGKTMM 167 (368)
T ss_pred cceeEEECCCCccHHHH
Confidence 48999999999999974
No 477
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=78.76 E-value=4.6 Score=42.85 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=43.6
Q ss_pred cchhhHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
=|-.|.+|+..++.++... ..+-+.|.-|-||+.+.=+.+...+.-+ -..+.|-.|+-+-...
T Consensus 254 kT~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G---ysnIyvtSPspeNlkT 319 (1011)
T KOG2036|consen 254 KTLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG---YSNIYVTSPSPENLKT 319 (1011)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC---cceEEEcCCChHHHHH
Confidence 4668999988888766543 3477899999999998777666655322 2246666688665444
No 478
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=78.47 E-value=3.2 Score=45.84 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCC 126 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~ 126 (520)
...++-|.+||-.= + .-....+.+|+|+|||-.+.- ++..+... .+..+++|++-+..--.|+++.+.+.++
T Consensus 737 v~ft~~qveai~sg---~-qpgltmvvgppgtgktd~avq-il~~lyhn-~p~qrTlivthsnqaln~lfeKi~~~d~ 808 (1320)
T KOG1806|consen 737 VKFTPTQVEAILSG---M-QPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN-SPNQRTLIVTHSNQALNQLFEKIMALDV 808 (1320)
T ss_pred hccCHHHHHHHHhc---C-CCCceeeecCCCCCCcchhhh-hhhhhhhc-CCCcceEEEEecccchhHHHHHHHhccc
Confidence 35577898886432 2 246788899999999987544 44433332 5778999999998888998888776543
No 479
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=78.41 E-value=6.9 Score=38.67 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=25.2
Q ss_pred hhHHHHHhhhCCCCCC---CCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 54 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 54 ~Q~~ai~~~~~~~~~~---~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.|..++..+...+..+ .-.++.||.|+||+..+.. +.+.+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~-la~~l~ 53 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALW-LAKSLF 53 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH-HHHHHC
Confidence 3555555544443334 3469999999999986543 444443
No 480
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=78.17 E-value=6.7 Score=42.40 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH--HHHhHHhhhhc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVNSARCK 123 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~--La~q~~~~~~~ 123 (520)
..+++|.|+||+|||..+.. ++.+.... +..++++=|.-+ |...++..+++
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~-l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~ 228 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAEL-LITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKR 228 (634)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHH
Confidence 57899999999999987644 44444432 345777778754 55554444433
No 481
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=78.16 E-value=17 Score=37.76 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=54.0
Q ss_pred CcEEEEecCHHHHHHHHHHHhhcC--CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----ccc-cCCCCCCC
Q 010028 372 EKCIVFTSSVESTHRLCTLLNHFG--ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 443 (520)
Q Consensus 372 ~k~lIf~~s~~~~~~l~~~L~~~~--~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidl~~~ 443 (520)
.++||.+|+++-+..+++.++..+ ..+..+..++|+.+.......++ ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 368999999999999998887653 23578888999988765543332 5679999994 233 35788888
Q ss_pred cEEEE
Q 010028 444 NNVVN 448 (520)
Q Consensus 444 ~~VI~ 448 (520)
..+|.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88774
No 482
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.08 E-value=5.8 Score=38.91 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
.-+.+.||+|+|||..... +...+. . .+.+++++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~k-LA~~l~-~--~g~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGK-LAHKYK-A--QGKKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHH-HHHHHH-h--cCCeEEEEe
Confidence 4477899999999986433 222232 2 344677665
No 483
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=77.99 E-value=2.7 Score=38.15 Aligned_cols=16 Identities=44% Similarity=0.519 Sum_probs=12.4
Q ss_pred EEEECCCCChhhHHhH
Q 010028 72 LCINSPTGSGKTLSYA 87 (520)
Q Consensus 72 ~li~apTGsGKT~~~l 87 (520)
.+|.||||+|||..++
T Consensus 4 ~~i~GpT~tGKt~~ai 19 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAI 19 (233)
T ss_dssp EEEE-STTSSHHHHHH
T ss_pred EEEECCCCCChhHHHH
Confidence 5789999999998653
No 484
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=77.97 E-value=1.4 Score=38.90 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.++++.+|||+|||..+
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 36889999999999854
No 485
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=77.92 E-value=10 Score=41.13 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=52.4
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC--CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----cccc-CCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG--ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVE 441 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~--~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidl~ 441 (520)
...++||.||+++-+..+++.+..+. ..+..+..++|+.+.......+ .....|+|+|+ .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 34579999999999999988876643 1357788888887665443332 24578999994 3333 36788
Q ss_pred CCcEEEE
Q 010028 442 GVNNVVN 448 (520)
Q Consensus 442 ~~~~VI~ 448 (520)
++..||.
T Consensus 149 ~l~~lVl 155 (629)
T PRK11634 149 KLSGLVL 155 (629)
T ss_pred hceEEEe
Confidence 8887763
No 486
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=77.86 E-value=2.4 Score=38.54 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=21.2
Q ss_pred CCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 67 LFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
..|.-+.|++|.|||||. ++-.+..+..
T Consensus 26 ~~Gevv~iiGpSGSGKST--lLRclN~LE~ 53 (240)
T COG1126 26 EKGEVVVIIGPSGSGKST--LLRCLNGLEE 53 (240)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHCCcC
Confidence 357788999999999998 4556665543
No 487
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.75 E-value=1.9 Score=46.34 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCEEEECCCCChhhHHhH
Q 010028 70 RDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~l 87 (520)
...+++||.|+|||.++.
T Consensus 40 hayLf~Gp~G~GKtt~A~ 57 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCAR 57 (614)
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 347899999999999543
No 488
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=77.62 E-value=7.4 Score=37.88 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEE---EcCCHHHHHhH
Q 010028 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV---VLPTRDLALQV 117 (520)
Q Consensus 59 i~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vli---l~Pt~~La~q~ 117 (520)
++.++..-..|.-.++.+|||+|||.-..-..++... .|.++|. =.|++-|+.-+
T Consensus 263 LNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~----QGVnTLwgSFEi~n~rla~~m 320 (514)
T KOG2373|consen 263 LNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT----QGVNTLWGSFEIPNKRLAHWM 320 (514)
T ss_pred HHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHh----hhhhheeeeeecchHHHHHHH
Confidence 3444554444556789999999999743333443332 2344444 45888887764
No 489
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=77.49 E-value=1.6 Score=38.78 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=13.3
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||+|+|||..|
T Consensus 3 ~~~vlL~Gps~SGKTaLf 20 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALF 20 (181)
T ss_dssp --EEEEE-STTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467899999999999854
No 490
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=77.29 E-value=11 Score=40.31 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=51.9
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.|+++..++++++. +.. .++.+..++|+.+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~---------------------------------------L~~----~g~~v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVART---------------------------------------LER----HGYRVGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHH---------------------------------------HHH----cCCCEEEEeCCCC
Confidence 345789999999988885443 222 2578889999887
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 245 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 245 (520)
..++...+. .......+|+|+|. .+. ..+++..+++||.-+.
T Consensus 293 ~~eR~~il~-----------------~Fr~G~~~VLVaTd-----v~a--rGIDip~V~~VInyd~ 334 (572)
T PRK04537 293 QKKRESLLN-----------------RFQKGQLEILVATD-----VAA--RGLHIDGVKYVYNYDL 334 (572)
T ss_pred HHHHHHHHH-----------------HHHcCCCeEEEEeh-----hhh--cCCCccCCCEEEEcCC
Confidence 766544332 12334678999992 223 3577888888876543
No 491
>PRK08006 replicative DNA helicase; Provisional
Probab=76.86 E-value=24 Score=36.76 Aligned_cols=55 Identities=7% Similarity=-0.176 Sum_probs=34.1
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
+|.+. .++.+...+..|.=++|.|.+|.|||..++--+...... .+.+++|++.-
T Consensus 208 ~TG~~--~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~---~g~~V~~fSlE 262 (471)
T PRK08006 208 NTGYD--DLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML---QDKPVLIFSLE 262 (471)
T ss_pred cCCCH--HHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---cCCeEEEEecc
Confidence 45444 456666666556668889999999998654433332222 24467777654
No 492
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.83 E-value=7.9 Score=40.40 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=52.5
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (520)
++.+||++|+++-+......|...+ ..+..+++..+..++..++.....++.+++++|+-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~g---i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASG---IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 5679999999999988888888765 77888999999999999999999999999999863
No 493
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=76.79 E-value=14 Score=38.18 Aligned_cols=50 Identities=26% Similarity=0.301 Sum_probs=36.3
Q ss_pred cceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEE
Q 010028 168 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 241 (520)
Q Consensus 168 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lV 241 (520)
++++..+||+.+..++...+.. .-....+|+|||.-. .+++++.++++||
T Consensus 541 g~~~~tlHg~k~qeQRe~aL~~-----------------fr~~t~dIlVaTDvA-------gRGIDIpnVSlVi 590 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENALAD-----------------FREGTGDILVATDVA-------GRGIDIPNVSLVI 590 (673)
T ss_pred cceEEEeeCCccHHHHHHHHHH-----------------HHhcCCCEEEEeccc-------ccCCCCCccceee
Confidence 7999999999887776544322 223467999999322 3568899999887
No 494
>PRK07004 replicative DNA helicase; Provisional
Probab=76.61 E-value=14 Score=38.33 Aligned_cols=55 Identities=9% Similarity=-0.217 Sum_probs=33.2
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
|+.+. .++.+...+..|.-++|.|.||+|||..++--+.....+ .+..++|++.-
T Consensus 197 ~TG~~--~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~---~~~~v~~fSlE 251 (460)
T PRK07004 197 PTGFV--DLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE---YGLPVAVFSME 251 (460)
T ss_pred cCCcH--HhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH---cCCeEEEEeCC
Confidence 44433 445555555556678889999999998654333332222 24467777643
No 495
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=76.60 E-value=1.6 Score=36.99 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.4
Q ss_pred EEEECCCCChhhHH
Q 010028 72 LCINSPTGSGKTLS 85 (520)
Q Consensus 72 ~li~apTGsGKT~~ 85 (520)
++++||+|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999984
No 496
>PRK00131 aroK shikimate kinase; Reviewed
Probab=76.50 E-value=2 Score=37.75 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.8
Q ss_pred CCCCCEEEECCCCChhhHHh
Q 010028 67 LFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ 86 (520)
..+..+++.|++|||||..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla 21 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHH
Confidence 34678999999999999854
No 497
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=76.30 E-value=11 Score=38.88 Aligned_cols=74 Identities=9% Similarity=0.209 Sum_probs=53.9
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc------cccCCCCCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA------MTRGMDVEGV 443 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~------~~~Gidl~~~ 443 (520)
..++||.+|+++-+..+++.++..+ ..+..+..++|+....++...+ .+..+|||+|+- ....+++.++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 3579999999999998888776543 3457888999998876655444 356789999961 1245677788
Q ss_pred cEEEE
Q 010028 444 NNVVN 448 (520)
Q Consensus 444 ~~VI~ 448 (520)
++||.
T Consensus 149 ~~lVi 153 (434)
T PRK11192 149 ETLIL 153 (434)
T ss_pred CEEEE
Confidence 88774
No 498
>PRK08840 replicative DNA helicase; Provisional
Probab=76.21 E-value=24 Score=36.75 Aligned_cols=55 Identities=7% Similarity=-0.116 Sum_probs=33.6
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
+|.+. .++.+...+..|.-++|.|.||.|||..++- ++.++... .+..++|++.-
T Consensus 201 ~TG~~--~LD~~~~G~~~g~LiviaarPg~GKTafaln-ia~~~a~~--~~~~v~~fSlE 255 (464)
T PRK08840 201 DTGFT--DLNKKTAGLQGSDLIIVAARPSMGKTTFAMN-LCENAAMD--QDKPVLIFSLE 255 (464)
T ss_pred CCCcH--HHHHhhcCCCCCceEEEEeCCCCchHHHHHH-HHHHHHHh--CCCeEEEEecc
Confidence 45444 3455566565566788899999999986533 33332211 24467777654
No 499
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=76.11 E-value=3 Score=44.47 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=34.1
Q ss_pred eCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccc
Q 010028 217 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 272 (520)
Q Consensus 217 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~ 272 (520)
+-|+++...+..-+..+ . ++.+||+|-+....-++--..+++.+...-...|
T Consensus 490 AMPGkiIq~LK~v~t~N---P-liLiDEvDKlG~g~qGDPasALLElLDPEQNanF 541 (906)
T KOG2004|consen 490 AMPGKIIQCLKKVKTEN---P-LILIDEVDKLGSGHQGDPASALLELLDPEQNANF 541 (906)
T ss_pred cCChHHHHHHHhhCCCC---c-eEEeehhhhhCCCCCCChHHHHHHhcChhhccch
Confidence 46999999887644322 2 8999999998743445556666666655443333
No 500
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=75.90 E-value=4.3 Score=41.09 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCCCcchhhHHH-HHhhh---CCCCCCCCEEEECCCCChhhHHhH
Q 010028 38 RLKVALQNMGISSLFPVQVAV-WQETI---GPGLFERDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 38 ~~~~~l~~~~~~~~~~~Q~~a-i~~~~---~~~~~~~~~li~apTGsGKT~~~l 87 (520)
++--.+...|+ .|..+..++ +..+. +-+..+.|+++.||+|+|||..+.
T Consensus 175 Wid~LlrSiG~-~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 175 WIDVLIRSIGY-EPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHhcCC-CcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 33444456777 343333322 22221 223356899999999999997553
Done!