Query 010028
Match_columns 520
No_of_seqs 164 out of 1812
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.3E-54 1.1E-58 442.6 38.8 378 17-509 51-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 5.7E-52 1.9E-56 425.0 36.0 383 16-510 9-409 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 4.1E-51 1.4E-55 417.7 36.0 362 20-495 35-397 (410)
4 1s2m_A Putative ATP-dependent 100.0 2.1E-50 7.2E-55 411.1 36.5 372 20-509 19-390 (400)
5 3eiq_A Eukaryotic initiation f 100.0 1E-50 3.4E-55 415.3 33.3 374 21-509 39-412 (414)
6 1xti_A Probable ATP-dependent 100.0 1.5E-49 5E-54 403.5 39.1 362 21-494 7-371 (391)
7 3fht_A ATP-dependent RNA helic 100.0 1.4E-49 4.7E-54 406.5 33.8 364 19-496 22-395 (412)
8 3pey_A ATP-dependent RNA helic 100.0 7.7E-49 2.6E-53 398.5 34.6 372 21-509 4-383 (395)
9 1hv8_A Putative ATP-dependent 100.0 3E-48 1E-52 390.1 34.3 356 20-495 4-359 (367)
10 1fuu_A Yeast initiation factor 100.0 2.4E-50 8.3E-55 409.6 18.3 371 20-508 19-390 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 3.3E-48 1.1E-52 412.6 34.6 372 35-494 28-411 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 5.4E-48 1.8E-52 410.6 35.3 372 35-494 79-462 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 1.6E-49 5.5E-54 413.9 16.7 362 20-495 90-461 (479)
14 2z0m_A 337AA long hypothetical 100.0 2.8E-46 9.5E-51 371.4 32.7 335 35-494 1-335 (337)
15 1oyw_A RECQ helicase, ATP-depe 100.0 1E-45 3.4E-50 386.7 27.2 348 22-492 2-354 (523)
16 3fho_A ATP-dependent RNA helic 100.0 1.1E-46 3.8E-51 393.9 15.7 352 35-495 126-485 (508)
17 2v1x_A ATP-dependent DNA helic 100.0 5.7E-45 2E-49 384.7 26.4 339 35-491 28-384 (591)
18 3oiy_A Reverse gyrase helicase 100.0 5.9E-43 2E-47 357.6 29.4 355 38-509 9-392 (414)
19 2zj8_A DNA helicase, putative 100.0 6E-41 2.1E-45 365.4 29.5 342 23-484 2-390 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.8E-40 6.1E-45 361.8 30.2 340 22-482 8-409 (715)
21 4a2p_A RIG-I, retinoic acid in 100.0 6.5E-40 2.2E-44 348.0 26.5 336 47-483 4-510 (556)
22 2p6r_A Afuhel308 helicase; pro 100.0 3.3E-40 1.1E-44 358.6 23.9 337 35-484 10-391 (702)
23 3l9o_A ATP-dependent RNA helic 100.0 6.7E-40 2.3E-44 367.0 25.6 338 36-491 170-608 (1108)
24 2ykg_A Probable ATP-dependent 100.0 4E-40 1.4E-44 358.8 22.9 347 40-485 3-520 (696)
25 4ddu_A Reverse gyrase; topoiso 100.0 3.9E-39 1.3E-43 360.7 29.6 350 45-509 74-519 (1104)
26 4f92_B U5 small nuclear ribonu 100.0 3.4E-39 1.1E-43 373.2 29.7 395 16-519 895-1343(1724)
27 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-39 5.1E-44 364.4 25.4 351 39-506 46-479 (1054)
28 3tbk_A RIG-I helicase domain; 100.0 5.3E-40 1.8E-44 348.6 18.5 337 50-486 4-512 (555)
29 1wp9_A ATP-dependent RNA helic 100.0 1.9E-38 6.4E-43 330.7 29.0 323 50-484 9-478 (494)
30 4a2q_A RIG-I, retinoic acid in 100.0 7.5E-39 2.5E-43 352.3 25.4 339 45-483 243-751 (797)
31 2xgj_A ATP-dependent RNA helic 100.0 3.7E-38 1.3E-42 349.9 28.2 325 44-491 81-510 (1010)
32 4f92_B U5 small nuclear ribonu 100.0 2.1E-38 7.1E-43 366.6 22.3 370 47-520 76-509 (1724)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-37 4.3E-42 346.1 24.7 338 46-483 244-751 (936)
34 1gm5_A RECG; helicase, replica 100.0 9.2E-38 3.1E-42 336.5 21.7 329 36-480 355-696 (780)
35 4a4z_A Antiviral helicase SKI2 100.0 5.1E-37 1.7E-41 340.9 26.8 327 46-491 36-504 (997)
36 2eyq_A TRCF, transcription-rep 100.0 2.6E-36 8.7E-41 340.1 30.0 329 35-481 588-922 (1151)
37 4gl2_A Interferon-induced heli 100.0 2E-37 6.8E-42 337.7 20.0 338 50-480 7-518 (699)
38 1tf5_A Preprotein translocase 100.0 2E-36 7E-41 319.7 26.4 367 45-494 79-565 (844)
39 2oca_A DAR protein, ATP-depend 100.0 9.8E-37 3.3E-41 320.0 22.3 311 49-479 112-453 (510)
40 2fwr_A DNA repair protein RAD2 100.0 2E-36 7E-41 314.5 20.7 292 50-480 93-453 (472)
41 2whx_A Serine protease/ntpase/ 100.0 3.8E-36 1.3E-40 318.3 15.4 313 35-493 157-493 (618)
42 2jlq_A Serine protease subunit 100.0 2.6E-35 8.7E-40 303.0 18.9 288 47-480 1-310 (451)
43 1yks_A Genome polyprotein [con 100.0 1.9E-36 6.4E-41 310.0 9.5 278 66-493 5-314 (440)
44 2xau_A PRE-mRNA-splicing facto 100.0 1.1E-34 3.9E-39 314.5 23.7 337 21-483 71-445 (773)
45 1nkt_A Preprotein translocase 100.0 6E-34 2E-38 300.2 27.3 368 46-494 108-637 (922)
46 2fsf_A Preprotein translocase 100.0 2.3E-34 7.7E-39 303.2 22.9 344 46-482 71-584 (853)
47 2wv9_A Flavivirin protease NS2 100.0 2E-34 6.8E-39 307.0 17.2 308 43-491 203-546 (673)
48 2z83_A Helicase/nucleoside tri 100.0 2.3E-33 7.8E-38 288.9 20.9 283 68-496 20-333 (459)
49 3h1t_A Type I site-specific re 100.0 3.6E-33 1.2E-37 297.7 20.2 317 49-479 177-556 (590)
50 2v6i_A RNA helicase; membrane, 100.0 8.8E-33 3E-37 282.3 20.8 269 69-478 2-288 (431)
51 3o8b_A HCV NS3 protease/helica 100.0 1.5E-33 5.2E-38 295.6 13.8 281 50-485 217-518 (666)
52 3dmq_A RNA polymerase-associat 100.0 1.9E-32 6.5E-37 304.8 21.8 124 355-480 487-612 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 4.5E-31 1.5E-35 280.3 19.2 283 68-492 154-455 (677)
54 3fe2_A Probable ATP-dependent 100.0 1.7E-30 5.6E-35 245.2 19.5 214 16-338 23-240 (242)
55 1z63_A Helicase of the SNF2/RA 100.0 1.3E-30 4.4E-35 272.8 19.6 123 356-481 324-453 (500)
56 3ber_A Probable ATP-dependent 100.0 1E-29 3.5E-34 240.5 19.7 207 20-335 41-247 (249)
57 2pl3_A Probable ATP-dependent 100.0 2.5E-29 8.5E-34 236.3 21.6 210 18-336 21-233 (236)
58 3ly5_A ATP-dependent RNA helic 100.0 1.4E-29 4.9E-34 241.4 20.0 220 6-331 35-258 (262)
59 2oxc_A Probable ATP-dependent 100.0 2.7E-29 9.3E-34 235.0 19.9 209 16-335 18-228 (230)
60 3fmo_B ATP-dependent RNA helic 100.0 1.9E-29 6.6E-34 244.9 19.4 207 20-336 90-298 (300)
61 3bor_A Human initiation factor 100.0 1.7E-29 5.7E-34 237.5 18.2 210 17-335 25-234 (237)
62 3iuy_A Probable ATP-dependent 100.0 2.4E-29 8E-34 235.2 19.1 211 14-334 11-227 (228)
63 1q0u_A Bstdead; DEAD protein, 100.0 1.9E-29 6.6E-34 234.2 18.4 211 22-338 4-214 (219)
64 1vec_A ATP-dependent RNA helic 100.0 4.2E-29 1.4E-33 229.6 19.8 202 22-333 3-205 (206)
65 1t6n_A Probable ATP-dependent 100.0 1.2E-28 4.2E-33 229.0 23.1 208 18-334 10-219 (220)
66 3dkp_A Probable ATP-dependent 100.0 1.9E-29 6.4E-34 238.5 17.1 216 16-337 19-242 (245)
67 1qde_A EIF4A, translation init 100.0 4.6E-29 1.6E-33 232.6 18.8 209 18-337 10-218 (224)
68 1wrb_A DJVLGB; RNA helicase, D 100.0 3.3E-29 1.1E-33 238.1 17.5 214 20-338 21-242 (253)
69 3jux_A Protein translocase sub 100.0 1.7E-27 5.8E-32 246.0 29.4 180 307-494 411-607 (822)
70 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.7E-28 9.4E-33 269.4 24.2 346 37-496 251-722 (1038)
71 3mwy_W Chromo domain-containin 100.0 3.3E-28 1.1E-32 267.0 23.6 136 355-493 554-698 (800)
72 2gxq_A Heat resistant RNA depe 100.0 3.5E-28 1.2E-32 223.6 20.0 202 23-335 2-205 (207)
73 1z3i_X Similar to RAD54-like; 100.0 5E-27 1.7E-31 251.4 29.0 134 356-492 398-541 (644)
74 1c4o_A DNA nucleotide excision 99.9 3.9E-25 1.3E-29 236.4 26.5 124 357-484 423-553 (664)
75 2hjv_A ATP-dependent RNA helic 99.9 7E-25 2.4E-29 193.2 17.6 150 343-495 7-156 (163)
76 2d7d_A Uvrabc system protein B 99.9 3.6E-24 1.2E-28 228.9 26.3 123 357-483 429-558 (661)
77 1fuk_A Eukaryotic initiation f 99.9 6.5E-25 2.2E-29 193.9 14.4 156 346-507 4-160 (165)
78 2jgn_A DBX, DDX3, ATP-dependen 99.9 8.4E-25 2.9E-29 196.6 14.3 162 342-509 16-178 (185)
79 2rb4_A ATP-dependent RNA helic 99.9 1.4E-24 4.9E-29 193.7 15.6 150 343-495 5-161 (175)
80 2p6n_A ATP-dependent RNA helic 99.9 1.3E-24 4.3E-29 196.3 15.3 176 324-507 9-185 (191)
81 1t5i_A C_terminal domain of A 99.9 2E-24 6.8E-29 191.9 15.8 157 344-506 4-161 (172)
82 3eaq_A Heat resistant RNA depe 99.9 1E-23 3.4E-28 194.0 18.4 146 347-495 7-152 (212)
83 2vl7_A XPD; helicase, unknown 99.9 1.4E-23 4.7E-28 220.1 18.7 71 46-124 4-74 (540)
84 2ipc_A Preprotein translocase 99.9 8.3E-22 2.8E-26 207.4 26.2 131 46-249 76-215 (997)
85 3i32_A Heat resistant RNA depe 99.9 7.2E-23 2.5E-27 197.1 16.5 147 346-495 3-149 (300)
86 3crv_A XPD/RAD3 related DNA he 99.9 4.1E-22 1.4E-26 209.7 21.2 183 50-250 3-187 (551)
87 2yjt_D ATP-dependent RNA helic 99.8 1.7E-24 5.7E-29 192.2 0.0 146 346-494 4-150 (170)
88 4a15_A XPD helicase, ATP-depen 99.9 4.5E-21 1.5E-25 203.3 18.1 198 50-250 3-218 (620)
89 3b6e_A Interferon-induced heli 99.8 2.1E-20 7.3E-25 172.6 12.9 144 46-254 29-180 (216)
90 3llm_A ATP-dependent RNA helic 99.8 2.4E-18 8.3E-23 160.9 13.1 143 49-263 60-205 (235)
91 1rif_A DAR protein, DNA helica 99.8 1.8E-18 6.1E-23 166.6 11.2 128 50-251 113-240 (282)
92 2fz4_A DNA repair protein RAD2 99.7 6.6E-17 2.3E-21 151.0 10.2 117 49-253 92-209 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 9.4E-17 3.2E-21 152.6 10.6 125 354-481 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.2 1E-06 3.5E-11 93.1 6.2 77 38-120 136-215 (608)
95 4b3f_X DNA-binding protein smu 98.1 6.7E-06 2.3E-10 87.9 8.7 68 49-123 188-255 (646)
96 2gk6_A Regulator of nonsense t 97.9 6.4E-05 2.2E-09 79.8 13.4 70 48-124 178-247 (624)
97 2xzl_A ATP-dependent helicase 97.9 7.6E-05 2.6E-09 81.1 12.6 70 48-124 358-427 (802)
98 3upu_A ATP-dependent DNA helic 97.9 1.1E-05 3.8E-10 82.5 5.6 69 46-117 21-90 (459)
99 2wjy_A Regulator of nonsense t 97.8 0.00012 4.1E-09 79.5 13.2 69 49-124 355-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.6 7.5E-05 2.6E-09 78.1 7.5 60 50-117 189-248 (574)
101 3lfu_A DNA helicase II; SF1 he 97.3 0.00029 9.9E-09 75.3 7.6 89 49-144 8-96 (647)
102 3hgt_A HDA1 complex subunit 3; 97.3 0.002 7E-08 61.2 12.5 123 353-483 105-239 (328)
103 1uaa_A REP helicase, protein ( 97.3 0.00068 2.3E-08 72.7 9.6 90 50-145 2-91 (673)
104 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0018 6.2E-08 69.9 9.6 89 49-144 10-98 (724)
105 2o0j_A Terminase, DNA packagin 96.5 0.021 7E-07 56.2 12.2 66 50-121 163-228 (385)
106 3vkw_A Replicase large subunit 96.1 0.011 3.8E-07 58.9 7.8 38 71-117 163-200 (446)
107 2j9r_A Thymidine kinase; TK1, 96.1 0.0052 1.8E-07 54.9 4.8 40 69-112 28-67 (214)
108 1xx6_A Thymidine kinase; NESG, 96.0 0.011 3.7E-07 52.1 6.6 40 69-112 8-47 (191)
109 2orw_A Thymidine kinase; TMTK, 96.0 0.0059 2E-07 53.6 4.9 40 69-112 3-42 (184)
110 2b8t_A Thymidine kinase; deoxy 96.0 0.0056 1.9E-07 55.4 4.8 39 69-111 12-50 (223)
111 3u4q_A ATP-dependent helicase/ 95.5 0.018 6.2E-07 65.9 7.4 70 50-125 10-81 (1232)
112 3e2i_A Thymidine kinase; Zn-bi 95.5 0.0082 2.8E-07 53.5 3.5 40 69-112 28-67 (219)
113 3cpe_A Terminase, DNA packagin 95.4 0.074 2.5E-06 55.8 11.2 66 50-121 163-228 (592)
114 1w4r_A Thymidine kinase; type 95.4 0.027 9.2E-07 49.4 6.3 39 69-111 20-58 (195)
115 2orv_A Thymidine kinase; TP4A 94.9 0.03 1E-06 50.5 5.4 40 69-112 19-58 (234)
116 1a5t_A Delta prime, HOLB; zinc 94.8 0.042 1.4E-06 53.1 6.6 44 51-95 3-49 (334)
117 2zpa_A Uncharacterized protein 94.5 0.036 1.2E-06 58.1 5.6 58 50-116 175-232 (671)
118 1gm5_A RECG; helicase, replica 93.7 0.2 7E-06 54.0 9.6 79 370-448 416-496 (780)
119 2v1u_A Cell division control p 93.6 0.57 1.9E-05 45.7 12.2 18 69-86 44-61 (387)
120 3oiy_A Reverse gyrase helicase 92.4 0.47 1.6E-05 47.0 9.6 79 370-448 63-145 (414)
121 2chg_A Replication factor C sm 92.4 0.63 2.2E-05 41.1 9.6 17 70-86 39-55 (226)
122 3vfd_A Spastin; ATPase, microt 92.3 0.29 1E-05 48.2 7.8 18 69-86 148-165 (389)
123 2qby_A CDC6 homolog 1, cell di 92.3 0.81 2.8E-05 44.5 11.1 18 69-86 45-62 (386)
124 3u61_B DNA polymerase accessor 91.6 0.43 1.5E-05 45.6 8.0 28 236-263 105-132 (324)
125 1iqp_A RFCS; clamp loader, ext 90.2 0.38 1.3E-05 45.8 6.1 16 71-86 48-63 (327)
126 3ec2_A DNA replication protein 90.0 0.17 5.8E-06 43.7 3.1 18 69-86 38-55 (180)
127 2hjv_A ATP-dependent RNA helic 89.9 2.3 7.7E-05 35.8 10.1 78 100-244 34-111 (163)
128 2qby_B CDC6 homolog 3, cell di 89.7 0.56 1.9E-05 45.8 7.0 18 69-86 45-62 (384)
129 3n70_A Transport activator; si 89.6 0.23 7.7E-06 41.3 3.4 19 68-86 23-41 (145)
130 2w58_A DNAI, primosome compone 89.4 0.26 8.9E-06 43.4 3.9 34 70-107 55-88 (202)
131 2eyq_A TRCF, transcription-rep 89.3 1.5 5.2E-05 49.6 10.8 79 370-448 651-731 (1151)
132 4ddu_A Reverse gyrase; topoiso 89.1 1.2 4E-05 50.2 9.7 80 369-448 119-202 (1104)
133 2gno_A DNA polymerase III, gam 88.9 0.4 1.4E-05 45.5 4.9 18 70-87 19-36 (305)
134 3co5_A Putative two-component 87.5 0.33 1.1E-05 40.2 3.0 18 68-85 26-43 (143)
135 3io5_A Recombination and repai 87.3 0.67 2.3E-05 43.9 5.3 43 68-113 28-70 (333)
136 3u4q_B ATP-dependent helicase/ 87.3 0.64 2.2E-05 52.9 6.2 71 72-144 4-74 (1166)
137 1t6n_A Probable ATP-dependent 87.2 3 0.0001 36.8 9.6 75 371-448 82-164 (220)
138 2rb4_A ATP-dependent RNA helic 86.6 4 0.00014 34.7 9.7 76 100-242 33-108 (175)
139 2kjq_A DNAA-related protein; s 86.0 1.1 3.8E-05 37.2 5.6 37 68-108 35-71 (149)
140 1fuk_A Eukaryotic initiation f 85.7 5.1 0.00017 33.6 9.8 78 100-244 29-106 (165)
141 3hws_A ATP-dependent CLP prote 85.5 0.48 1.6E-05 46.1 3.4 19 68-86 50-68 (363)
142 3eaq_A Heat resistant RNA depe 85.2 4.5 0.00015 35.7 9.6 76 100-242 30-105 (212)
143 3dm5_A SRP54, signal recogniti 84.7 5.1 0.00018 39.8 10.4 34 71-108 102-135 (443)
144 3ber_A Probable ATP-dependent 84.5 5.4 0.00019 36.1 10.0 75 370-448 110-192 (249)
145 1t5i_A C_terminal domain of A 84.4 5.9 0.0002 33.5 9.6 78 100-244 30-107 (172)
146 3iuy_A Probable ATP-dependent 84.1 2.7 9.2E-05 37.5 7.7 75 370-448 93-173 (228)
147 1p9r_A General secretion pathw 84.0 1.3 4.5E-05 43.9 5.9 31 53-85 153-183 (418)
148 2zts_A Putative uncharacterize 84.0 0.93 3.2E-05 41.1 4.5 40 68-110 29-68 (251)
149 2qgz_A Helicase loader, putati 83.9 0.99 3.4E-05 42.8 4.8 37 69-108 152-188 (308)
150 2r44_A Uncharacterized protein 83.8 0.22 7.6E-06 47.8 0.1 32 55-86 32-63 (331)
151 1tue_A Replication protein E1; 83.2 1.3 4.3E-05 39.1 4.7 48 37-86 28-75 (212)
152 2cvh_A DNA repair and recombin 83.1 1.3 4.4E-05 39.2 5.0 45 58-109 8-53 (220)
153 2p6n_A ATP-dependent RNA helic 83.0 7.8 0.00027 33.5 10.0 77 101-244 54-130 (191)
154 2gxq_A Heat resistant RNA depe 83.0 7.2 0.00025 33.8 9.9 74 370-448 71-150 (207)
155 3bos_A Putative DNA replicatio 82.8 2.9 9.7E-05 37.3 7.3 36 69-108 52-87 (242)
156 2oap_1 GSPE-2, type II secreti 82.6 1.6 5.4E-05 44.6 5.9 32 51-85 245-276 (511)
157 2jgn_A DBX, DDX3, ATP-dependen 82.4 4 0.00014 35.2 7.8 77 100-243 45-121 (185)
158 2eyu_A Twitching motility prot 82.0 1.3 4.5E-05 40.8 4.7 19 67-85 23-41 (261)
159 2w0m_A SSO2452; RECA, SSPF, un 81.9 1.7 5.7E-05 38.8 5.4 48 58-109 11-59 (235)
160 3hjh_A Transcription-repair-co 81.8 2.4 8.2E-05 42.8 6.9 75 360-450 372-446 (483)
161 1jbk_A CLPB protein; beta barr 81.7 1.1 3.8E-05 38.4 3.9 18 69-86 43-60 (195)
162 2oxc_A Probable ATP-dependent 81.5 3.8 0.00013 36.6 7.5 74 370-448 91-172 (230)
163 2bjv_A PSP operon transcriptio 81.4 0.84 2.9E-05 42.1 3.1 19 68-86 28-46 (265)
164 2c9o_A RUVB-like 1; hexameric 81.3 1.2 4.2E-05 44.8 4.5 19 68-86 62-80 (456)
165 1e9r_A Conjugal transfer prote 81.2 1.3 4.4E-05 44.3 4.7 44 69-116 53-96 (437)
166 3syl_A Protein CBBX; photosynt 80.9 1.8 6.2E-05 40.7 5.4 18 69-86 67-84 (309)
167 1ofh_A ATP-dependent HSL prote 80.8 0.66 2.2E-05 43.7 2.2 18 69-86 50-67 (310)
168 3bh0_A DNAB-like replicative h 80.7 2.1 7.2E-05 40.6 5.8 49 58-110 57-105 (315)
169 1sxj_D Activator 1 41 kDa subu 80.6 0.98 3.3E-05 43.5 3.5 40 70-110 59-98 (353)
170 3cmu_A Protein RECA, recombina 80.4 1.5 5.2E-05 51.8 5.4 51 59-113 1415-1467(2050)
171 3nbx_X ATPase RAVA; AAA+ ATPas 80.3 0.36 1.2E-05 49.2 0.2 31 55-85 27-57 (500)
172 2p65_A Hypothetical protein PF 79.5 1.1 3.8E-05 38.2 3.1 18 69-86 43-60 (187)
173 1ex7_A Guanylate kinase; subst 79.0 0.86 3E-05 39.6 2.2 16 70-85 2-17 (186)
174 2chq_A Replication factor C sm 78.6 1.5 5.2E-05 41.3 4.0 16 71-86 40-55 (319)
175 3fe2_A Probable ATP-dependent 78.4 6.1 0.00021 35.5 7.9 75 370-448 101-182 (242)
176 2qor_A Guanylate kinase; phosp 78.2 1.2 4E-05 39.2 2.9 22 65-86 8-29 (204)
177 1vec_A ATP-dependent RNA helic 78.2 8 0.00027 33.5 8.5 74 371-448 71-152 (206)
178 2z4s_A Chromosomal replication 78.1 3.4 0.00012 41.3 6.6 39 69-109 130-168 (440)
179 1oyw_A RECQ helicase, ATP-depe 78.1 4.6 0.00016 41.3 7.7 59 371-432 65-123 (523)
180 3bgw_A DNAB-like replicative h 77.8 2.7 9.1E-05 42.1 5.7 49 58-110 186-234 (444)
181 1l8q_A Chromosomal replication 77.8 3.8 0.00013 38.8 6.6 36 69-108 37-72 (324)
182 1um8_A ATP-dependent CLP prote 77.7 1.6 5.5E-05 42.6 4.0 18 69-86 72-89 (376)
183 3bor_A Human initiation factor 77.6 5.1 0.00018 35.9 7.2 76 370-448 97-179 (237)
184 3vkg_A Dynein heavy chain, cyt 77.3 1.6 5.6E-05 53.9 4.6 84 35-121 873-957 (3245)
185 1lvg_A Guanylate kinase, GMP k 77.3 1.1 3.7E-05 39.4 2.3 18 68-85 3-20 (198)
186 2pl3_A Probable ATP-dependent 77.3 7.2 0.00025 34.8 8.1 74 370-448 96-177 (236)
187 1kgd_A CASK, peripheral plasma 77.1 1.2 4E-05 38.4 2.5 18 68-85 4-21 (180)
188 1ojl_A Transcriptional regulat 77.1 1.6 5.4E-05 41.3 3.6 19 68-86 24-42 (304)
189 3i32_A Heat resistant RNA depe 77.0 11 0.00037 35.3 9.4 76 101-243 28-103 (300)
190 2q6t_A DNAB replication FORK h 76.9 3.3 0.00011 41.5 6.1 50 58-110 189-238 (444)
191 2v1x_A ATP-dependent DNA helic 76.8 4.9 0.00017 41.8 7.6 59 371-432 84-144 (591)
192 2dr3_A UPF0273 protein PH0284; 76.8 2.2 7.6E-05 38.4 4.5 39 68-110 22-60 (247)
193 2ewv_A Twitching motility prot 76.7 2.1 7.1E-05 41.8 4.4 18 68-85 135-152 (372)
194 4fcw_A Chaperone protein CLPB; 76.4 0.38 1.3E-05 45.6 -1.0 17 70-86 48-64 (311)
195 1w36_B RECB, exodeoxyribonucle 76.4 3.3 0.00011 47.1 6.5 56 70-125 17-80 (1180)
196 3te6_A Regulatory protein SIR3 76.1 1.2 4.2E-05 42.2 2.5 27 68-95 44-70 (318)
197 2i4i_A ATP-dependent RNA helic 76.1 13 0.00044 36.2 10.3 76 100-242 275-350 (417)
198 4a1f_A DNAB helicase, replicat 76.1 3.5 0.00012 39.5 5.7 49 58-110 35-83 (338)
199 3jvv_A Twitching mobility prot 76.1 2.2 7.5E-05 41.3 4.4 17 69-85 123-139 (356)
200 2r6a_A DNAB helicase, replicat 76.0 3.4 0.00012 41.4 6.0 50 58-110 192-241 (454)
201 2r2a_A Uncharacterized protein 75.9 1.6 5.6E-05 38.3 3.1 42 72-113 8-50 (199)
202 3uk6_A RUVB-like 2; hexameric 75.6 2.2 7.5E-05 41.3 4.3 18 69-86 70-87 (368)
203 1wrb_A DJVLGB; RNA helicase, D 75.0 32 0.0011 30.7 12.0 121 371-495 100-232 (253)
204 3vaa_A Shikimate kinase, SK; s 74.5 1.4 4.8E-05 38.5 2.3 19 68-86 24-42 (199)
205 3h4m_A Proteasome-activating n 74.5 1.5 5.2E-05 40.7 2.7 19 68-86 50-68 (285)
206 2qz4_A Paraplegin; AAA+, SPG7, 74.3 1.5 5.3E-05 40.0 2.7 18 69-86 39-56 (262)
207 3cf0_A Transitional endoplasmi 74.3 1.5 5.3E-05 41.2 2.7 19 68-86 48-66 (301)
208 1kag_A SKI, shikimate kinase I 74.2 1.6 5.5E-05 36.9 2.6 17 69-85 4-20 (173)
209 1sxj_C Activator 1 40 kDa subu 74.1 1.2 4E-05 42.8 1.9 15 72-86 49-63 (340)
210 1cr0_A DNA primase/helicase; R 74.0 3.7 0.00013 38.3 5.3 49 58-109 24-72 (296)
211 3ly5_A ATP-dependent RNA helic 74.0 14 0.00049 33.5 9.3 75 370-448 125-207 (262)
212 1njg_A DNA polymerase III subu 73.8 1.7 5.7E-05 38.8 2.7 17 70-86 46-62 (250)
213 3iij_A Coilin-interacting nucl 73.3 2 7E-05 36.6 3.1 19 68-86 10-28 (180)
214 3lw7_A Adenylate kinase relate 73.3 1.4 4.9E-05 37.1 2.1 15 72-86 4-18 (179)
215 3tr0_A Guanylate kinase, GMP k 73.3 1.6 5.6E-05 38.1 2.5 18 68-85 6-23 (205)
216 2d7d_A Uvrabc system protein B 73.2 9 0.00031 40.4 8.6 81 100-247 444-524 (661)
217 3tau_A Guanylate kinase, GMP k 73.2 1.6 5.4E-05 38.6 2.3 19 68-86 7-25 (208)
218 1sxj_E Activator 1 40 kDa subu 73.1 2.6 8.8E-05 40.5 4.1 16 71-86 38-53 (354)
219 3b9p_A CG5977-PA, isoform A; A 73.0 1.5 5.1E-05 41.0 2.3 18 69-86 54-71 (297)
220 2v9p_A Replication protein E1; 72.7 2.8 9.6E-05 39.5 4.0 37 57-95 114-150 (305)
221 3eie_A Vacuolar protein sortin 72.6 2.7 9.3E-05 39.9 4.0 18 69-86 51-68 (322)
222 3trf_A Shikimate kinase, SK; a 72.6 1.6 5.5E-05 37.4 2.2 18 69-86 5-22 (185)
223 2qmh_A HPR kinase/phosphorylas 72.4 1.5 5.1E-05 38.4 1.9 18 69-86 34-51 (205)
224 4b4t_M 26S protease regulatory 72.1 1.5 5.1E-05 43.6 2.1 18 69-86 215-232 (434)
225 1wp9_A ATP-dependent RNA helic 72.1 15 0.0005 36.4 9.7 74 370-448 51-131 (494)
226 1zp6_A Hypothetical protein AT 71.9 1.5 5E-05 37.9 1.8 18 68-85 8-25 (191)
227 4akg_A Glutathione S-transfera 71.9 2.7 9.4E-05 51.4 4.6 83 35-120 890-973 (2695)
228 1rj9_A FTSY, signal recognitio 71.9 3.9 0.00013 38.5 4.8 36 69-108 102-137 (304)
229 4b4t_J 26S protease regulatory 71.8 1.7 5.7E-05 42.7 2.3 18 69-86 182-199 (405)
230 3ice_A Transcription terminati 71.8 6.6 0.00023 38.2 6.4 35 51-86 157-191 (422)
231 1d2n_A N-ethylmaleimide-sensit 71.8 1.5 5.1E-05 40.5 1.9 18 69-86 64-81 (272)
232 3b85_A Phosphate starvation-in 71.8 2.5 8.6E-05 37.4 3.3 30 52-85 9-38 (208)
233 3pfi_A Holliday junction ATP-d 71.6 2.5 8.4E-05 40.4 3.5 18 69-86 55-72 (338)
234 3a8t_A Adenylate isopentenyltr 71.6 2 6.9E-05 41.0 2.8 17 70-86 41-57 (339)
235 2gza_A Type IV secretion syste 71.5 3.3 0.00011 40.1 4.4 18 68-85 174-191 (361)
236 1lv7_A FTSH; alpha/beta domain 71.3 1.6 5.5E-05 39.9 2.0 18 69-86 45-62 (257)
237 2zr9_A Protein RECA, recombina 71.2 4 0.00014 39.3 4.8 49 58-110 48-98 (349)
238 3c8u_A Fructokinase; YP_612366 71.1 3.7 0.00013 36.0 4.3 17 69-85 22-38 (208)
239 1u0j_A DNA replication protein 71.1 6.9 0.00024 35.9 6.2 48 37-87 73-122 (267)
240 3exa_A TRNA delta(2)-isopenten 70.9 1.8 6.1E-05 40.9 2.2 17 70-86 4-20 (322)
241 1qhx_A CPT, protein (chloramph 70.9 1.9 6.3E-05 36.7 2.2 18 69-86 3-20 (178)
242 3t15_A Ribulose bisphosphate c 70.9 1.5 5.2E-05 41.1 1.8 17 70-86 37-53 (293)
243 3ney_A 55 kDa erythrocyte memb 70.7 2.2 7.5E-05 37.4 2.6 18 68-85 18-35 (197)
244 1qde_A EIF4A, translation init 70.6 6.2 0.00021 34.8 5.8 74 370-448 81-161 (224)
245 4ag6_A VIRB4 ATPase, type IV s 70.4 4.5 0.00015 39.6 5.1 41 68-112 34-74 (392)
246 3f9v_A Minichromosome maintena 70.4 2.9 0.0001 43.5 3.9 15 71-85 329-343 (595)
247 3foz_A TRNA delta(2)-isopenten 70.3 1.9 6.5E-05 40.7 2.2 16 71-86 12-27 (316)
248 2px0_A Flagellar biosynthesis 70.2 4.2 0.00014 38.1 4.6 37 69-108 105-141 (296)
249 3a00_A Guanylate kinase, GMP k 70.1 2.2 7.4E-05 36.8 2.5 16 70-85 2-17 (186)
250 1g5t_A COB(I)alamin adenosyltr 70.1 5 0.00017 35.0 4.7 36 69-108 28-63 (196)
251 3b9q_A Chloroplast SRP recepto 70.0 4.5 0.00015 38.1 4.8 36 69-108 100-135 (302)
252 3i5x_A ATP-dependent RNA helic 70.0 38 0.0013 34.6 12.4 81 100-244 338-418 (563)
253 1y63_A LMAJ004144AAA protein; 69.8 2.4 8.3E-05 36.4 2.7 18 69-86 10-27 (184)
254 2ius_A DNA translocase FTSK; n 69.8 4.9 0.00017 40.8 5.3 43 69-111 167-209 (512)
255 2j41_A Guanylate kinase; GMP, 69.7 2.2 7.6E-05 37.2 2.5 19 68-86 5-23 (207)
256 2ze6_A Isopentenyl transferase 69.7 1.9 6.5E-05 39.5 2.1 15 72-86 4-18 (253)
257 3kb2_A SPBC2 prophage-derived 69.6 2 6.7E-05 36.2 2.0 16 71-86 3-18 (173)
258 3fht_A ATP-dependent RNA helic 69.2 20 0.00068 34.7 9.7 76 100-242 265-340 (412)
259 1xwi_A SKD1 protein; VPS4B, AA 69.2 1.8 6.3E-05 41.2 2.0 18 69-86 45-62 (322)
260 1s96_A Guanylate kinase, GMP k 69.0 2.2 7.6E-05 38.1 2.3 21 65-85 12-32 (219)
261 2z43_A DNA repair and recombin 69.0 3.9 0.00013 38.9 4.2 54 58-111 95-151 (324)
262 4b4t_K 26S protease regulatory 69.0 1.9 6.7E-05 42.7 2.1 18 69-86 206-223 (428)
263 1q57_A DNA primase/helicase; d 68.8 4.5 0.00016 41.1 4.9 49 59-110 232-280 (503)
264 4b4t_L 26S protease subunit RP 68.7 2 6.7E-05 42.8 2.1 18 69-86 215-232 (437)
265 1c4o_A DNA nucleotide excision 68.7 15 0.0005 38.8 8.9 81 100-247 438-518 (664)
266 1xti_A Probable ATP-dependent 68.5 20 0.00068 34.5 9.5 75 371-448 76-158 (391)
267 1ly1_A Polynucleotide kinase; 68.4 2.2 7.4E-05 36.3 2.1 16 71-86 4-19 (181)
268 2pt7_A CAG-ALFA; ATPase, prote 68.4 4.4 0.00015 38.6 4.5 17 68-84 170-186 (330)
269 1z6g_A Guanylate kinase; struc 68.2 2.6 9E-05 37.5 2.7 18 68-85 22-39 (218)
270 2v54_A DTMP kinase, thymidylat 68.2 2.6 9E-05 36.7 2.6 19 68-86 3-21 (204)
271 3k1j_A LON protease, ATP-depen 67.9 1.6 5.3E-05 45.8 1.2 32 55-86 46-77 (604)
272 1u94_A RECA protein, recombina 67.8 5.9 0.0002 38.2 5.2 50 58-111 50-101 (356)
273 3cm0_A Adenylate kinase; ATP-b 67.4 1.8 6E-05 37.2 1.3 18 69-86 4-21 (186)
274 3fmo_B ATP-dependent RNA helic 67.3 10 0.00035 35.5 6.7 71 371-448 162-241 (300)
275 2qp9_X Vacuolar protein sortin 67.3 2.5 8.5E-05 40.9 2.5 18 69-86 84-101 (355)
276 1hqc_A RUVB; extended AAA-ATPa 67.3 2.2 7.5E-05 40.4 2.0 18 69-86 38-55 (324)
277 1xp8_A RECA protein, recombina 66.8 5.5 0.00019 38.6 4.8 50 58-111 61-112 (366)
278 1n0w_A DNA repair protein RAD5 66.6 3.6 0.00012 36.8 3.3 30 59-88 13-43 (243)
279 3sqw_A ATP-dependent RNA helic 66.2 51 0.0017 33.9 12.4 82 100-245 287-368 (579)
280 3pxg_A Negative regulator of g 66.2 1.9 6.6E-05 43.5 1.5 18 69-86 201-218 (468)
281 3pey_A ATP-dependent RNA helic 66.1 27 0.00091 33.5 9.8 78 100-244 242-319 (395)
282 2iut_A DNA translocase FTSK; n 65.8 6 0.00021 40.6 5.0 43 69-111 214-256 (574)
283 3hr8_A Protein RECA; alpha and 65.8 5.4 0.00019 38.4 4.5 50 58-111 48-99 (356)
284 4eun_A Thermoresistant glucoki 65.7 2.8 9.7E-05 36.5 2.3 18 69-86 29-46 (200)
285 4gp7_A Metallophosphoesterase; 65.7 2.3 8E-05 36.1 1.7 17 69-85 9-25 (171)
286 2og2_A Putative signal recogni 65.5 6.1 0.00021 38.2 4.8 36 69-108 157-192 (359)
287 2r62_A Cell division protease 65.3 1.9 6.4E-05 39.7 1.1 18 69-86 44-61 (268)
288 4b4t_I 26S protease regulatory 65.1 2.7 9.1E-05 41.6 2.2 18 69-86 216-233 (437)
289 1q0u_A Bstdead; DEAD protein, 64.9 5.1 0.00018 35.3 3.9 74 371-448 72-156 (219)
290 1ixz_A ATP-dependent metallopr 64.8 2.7 9.2E-05 38.2 2.1 17 70-86 50-66 (254)
291 3bfn_A Kinesin-like protein KI 64.8 2.7 9.1E-05 41.0 2.1 37 50-86 74-116 (388)
292 1kht_A Adenylate kinase; phosp 64.8 2.9 9.9E-05 35.9 2.2 18 69-86 3-20 (192)
293 2rhm_A Putative kinase; P-loop 64.7 2.7 9.2E-05 36.2 2.0 18 69-86 5-22 (193)
294 3d8b_A Fidgetin-like protein 1 64.6 2.9 9.9E-05 40.4 2.3 18 69-86 117-134 (357)
295 4b4t_H 26S protease regulatory 64.6 2.3 7.8E-05 42.5 1.6 18 69-86 243-260 (467)
296 1g41_A Heat shock protein HSLU 64.5 2.6 8.9E-05 42.0 2.0 18 69-86 50-67 (444)
297 3crm_A TRNA delta(2)-isopenten 64.5 3.4 0.00012 39.2 2.7 17 70-86 6-22 (323)
298 3e70_C DPA, signal recognition 64.3 5.8 0.0002 37.8 4.3 36 69-108 129-164 (328)
299 1knq_A Gluconate kinase; ALFA/ 63.9 2.7 9.1E-05 35.6 1.8 18 69-86 8-25 (175)
300 1v5w_A DMC1, meiotic recombina 63.8 6.8 0.00023 37.6 4.8 54 58-111 110-166 (343)
301 2yvu_A Probable adenylyl-sulfa 63.7 6.9 0.00024 33.4 4.5 18 69-86 13-30 (186)
302 1goj_A Kinesin, kinesin heavy 63.5 2.9 9.9E-05 40.3 2.1 36 51-86 57-98 (355)
303 3t61_A Gluconokinase; PSI-biol 63.5 3 0.0001 36.3 2.1 17 70-86 19-35 (202)
304 3cmw_A Protein RECA, recombina 63.3 9 0.00031 44.8 6.3 44 69-116 1431-1474(1706)
305 1vma_A Cell division protein F 63.2 7.1 0.00024 36.7 4.7 35 70-108 105-139 (306)
306 2ehv_A Hypothetical protein PH 63.1 3.6 0.00012 37.1 2.6 21 67-87 28-48 (251)
307 3d3q_A TRNA delta(2)-isopenten 63.1 3.2 0.00011 39.7 2.3 16 71-86 9-24 (340)
308 3dc4_A Kinesin-like protein NO 63.1 2 6.9E-05 41.2 0.8 37 50-86 70-112 (344)
309 1gku_B Reverse gyrase, TOP-RG; 63.1 16 0.00054 40.9 8.2 77 370-448 98-181 (1054)
310 4a74_A DNA repair and recombin 63.0 3.6 0.00012 36.5 2.5 28 59-86 14-42 (231)
311 3b6e_A Interferon-induced heli 63.0 8.1 0.00028 33.6 4.9 75 370-448 81-168 (216)
312 4a14_A Kinesin, kinesin-like p 63.0 2.5 8.6E-05 40.6 1.5 36 51-86 60-101 (344)
313 1znw_A Guanylate kinase, GMP k 62.7 3.5 0.00012 36.2 2.4 18 68-85 19-36 (207)
314 3tqc_A Pantothenate kinase; bi 62.7 7.4 0.00025 36.9 4.7 23 72-96 95-117 (321)
315 3aez_A Pantothenate kinase; tr 62.6 11 0.00038 35.5 6.0 27 68-96 89-115 (312)
316 2db3_A ATP-dependent RNA helic 62.5 25 0.00085 34.7 8.9 52 168-243 324-375 (434)
317 2j0s_A ATP-dependent RNA helic 62.5 31 0.0011 33.4 9.6 77 101-244 276-352 (410)
318 3t0q_A AGR253WP; kinesin, alph 62.3 3.7 0.00013 39.5 2.6 36 51-86 63-103 (349)
319 2r8r_A Sensor protein; KDPD, P 62.2 8.2 0.00028 34.5 4.6 33 71-107 8-40 (228)
320 3lre_A Kinesin-like protein KI 62.1 3 0.0001 40.2 1.9 37 50-86 81-123 (355)
321 2x8a_A Nuclear valosin-contain 62.0 3.3 0.00011 38.4 2.1 16 70-85 45-60 (274)
322 1zuh_A Shikimate kinase; alpha 61.8 3.4 0.00012 34.7 2.1 17 70-86 8-24 (168)
323 1nij_A Hypothetical protein YJ 61.8 6 0.00021 37.4 4.0 34 71-110 6-39 (318)
324 1g8p_A Magnesium-chelatase 38 61.8 2.5 8.5E-05 40.5 1.3 18 69-86 45-62 (350)
325 2bdt_A BH3686; alpha-beta prot 61.7 3.5 0.00012 35.5 2.1 16 70-85 3-18 (189)
326 3fb4_A Adenylate kinase; psych 61.7 3.4 0.00012 36.4 2.1 15 72-86 3-17 (216)
327 2qt1_A Nicotinamide riboside k 61.5 3.3 0.00011 36.3 1.9 18 68-85 20-37 (207)
328 1ry6_A Internal kinesin; kines 61.5 2.2 7.4E-05 41.3 0.7 36 51-86 60-102 (360)
329 3lnc_A Guanylate kinase, GMP k 61.4 3 0.0001 37.3 1.7 17 69-85 27-43 (231)
330 3kl4_A SRP54, signal recogniti 61.4 6.4 0.00022 39.1 4.2 35 70-108 98-132 (433)
331 2yhs_A FTSY, cell division pro 61.4 7.4 0.00025 39.2 4.6 35 69-107 293-327 (503)
332 1tev_A UMP-CMP kinase; ploop, 61.3 3.5 0.00012 35.4 2.1 17 70-86 4-20 (196)
333 3pxi_A Negative regulator of g 60.7 1.5 5.3E-05 47.2 -0.5 16 71-86 523-538 (758)
334 2zan_A Vacuolar protein sortin 60.7 3.3 0.00011 41.4 2.0 18 69-86 167-184 (444)
335 1gvn_B Zeta; postsegregational 60.6 3.4 0.00012 38.6 1.9 17 70-86 34-50 (287)
336 3pvs_A Replication-associated 60.6 3.4 0.00012 41.3 2.1 17 70-86 51-67 (447)
337 2c95_A Adenylate kinase 1; tra 60.5 3.1 0.0001 35.9 1.5 18 69-86 9-26 (196)
338 1via_A Shikimate kinase; struc 60.4 4.1 0.00014 34.5 2.3 16 71-86 6-21 (175)
339 3dl0_A Adenylate kinase; phosp 60.4 3.7 0.00013 36.2 2.1 15 72-86 3-17 (216)
340 1xjc_A MOBB protein homolog; s 60.1 10 0.00035 32.1 4.7 34 71-108 6-39 (169)
341 3uie_A Adenylyl-sulfate kinase 60.0 3.5 0.00012 35.9 1.9 19 68-86 24-42 (200)
342 1tf5_A Preprotein translocase 59.7 16 0.00056 39.2 7.1 76 367-448 120-209 (844)
343 1iy2_A ATP-dependent metallopr 59.7 3.7 0.00013 37.9 2.1 17 70-86 74-90 (278)
344 1cke_A CK, MSSA, protein (cyti 59.7 4.3 0.00015 35.9 2.4 17 70-86 6-22 (227)
345 1in4_A RUVB, holliday junction 59.6 5.1 0.00017 38.2 3.0 17 70-86 52-68 (334)
346 1e6c_A Shikimate kinase; phosp 59.5 4 0.00014 34.3 2.1 17 70-86 3-19 (173)
347 3eph_A TRNA isopentenyltransfe 59.5 3.5 0.00012 40.4 1.9 16 71-86 4-19 (409)
348 1nks_A Adenylate kinase; therm 59.4 3.6 0.00012 35.3 1.8 16 71-86 3-18 (194)
349 2i3b_A HCR-ntpase, human cance 59.4 7.4 0.00025 33.6 3.8 17 69-85 1-17 (189)
350 2wwf_A Thymidilate kinase, put 59.4 4.1 0.00014 35.6 2.2 19 68-86 9-27 (212)
351 2iyv_A Shikimate kinase, SK; t 58.9 4.9 0.00017 34.3 2.5 17 70-86 3-19 (184)
352 1odf_A YGR205W, hypothetical 3 58.8 6.9 0.00023 36.5 3.7 16 71-86 33-48 (290)
353 1zu4_A FTSY; GTPase, signal re 58.8 8.6 0.00029 36.4 4.4 35 70-108 106-140 (320)
354 1rz3_A Hypothetical protein rb 58.7 9.3 0.00032 33.2 4.4 18 69-86 22-39 (201)
355 3hu3_A Transitional endoplasmi 58.6 4.8 0.00017 40.7 2.8 18 69-86 238-255 (489)
356 1f2t_A RAD50 ABC-ATPase; DNA d 58.5 4.4 0.00015 33.5 2.1 15 71-85 25-39 (149)
357 1fnn_A CDC6P, cell division co 58.2 3.8 0.00013 39.7 1.9 16 71-86 46-61 (389)
358 1qf9_A UMP/CMP kinase, protein 58.2 3.9 0.00013 35.0 1.8 17 70-86 7-23 (194)
359 1ye8_A Protein THEP1, hypothet 58.2 4.4 0.00015 34.7 2.1 15 71-85 2-16 (178)
360 1nn5_A Similar to deoxythymidy 58.1 4.5 0.00015 35.4 2.2 19 68-86 8-26 (215)
361 2bwj_A Adenylate kinase 5; pho 57.8 4 0.00014 35.3 1.8 18 69-86 12-29 (199)
362 1jjv_A Dephospho-COA kinase; P 57.8 4.4 0.00015 35.4 2.1 15 72-86 5-19 (206)
363 3lda_A DNA repair protein RAD5 57.8 8.5 0.00029 37.7 4.3 42 69-110 178-221 (400)
364 1s2m_A Putative ATP-dependent 57.7 61 0.0021 31.0 10.7 75 370-448 88-169 (400)
365 1jr3_A DNA polymerase III subu 57.7 5.1 0.00018 38.6 2.8 17 70-86 39-55 (373)
366 3pxi_A Negative regulator of g 57.6 3.4 0.00012 44.5 1.5 25 69-94 201-225 (758)
367 2cdn_A Adenylate kinase; phosp 57.5 4.4 0.00015 35.2 2.1 17 70-86 21-37 (201)
368 1ukz_A Uridylate kinase; trans 57.5 4.5 0.00015 35.2 2.1 17 70-86 16-32 (203)
369 1zd8_A GTP:AMP phosphotransfer 57.4 4 0.00014 36.3 1.8 18 69-86 7-24 (227)
370 2i1q_A DNA repair and recombin 57.1 7.4 0.00025 36.8 3.7 34 58-91 86-120 (322)
371 2pt5_A Shikimate kinase, SK; a 56.9 4.7 0.00016 33.7 2.1 16 71-86 2-17 (168)
372 2z0h_A DTMP kinase, thymidylat 56.9 4.7 0.00016 34.7 2.1 15 72-86 3-17 (197)
373 1sxj_B Activator 1 37 kDa subu 56.7 9 0.00031 35.8 4.3 16 71-86 44-59 (323)
374 3nwn_A Kinesin-like protein KI 56.7 6.5 0.00022 37.9 3.2 34 53-86 83-122 (359)
375 3kta_A Chromosome segregation 56.4 6.5 0.00022 33.4 2.9 15 71-85 28-42 (182)
376 2jaq_A Deoxyguanosine kinase; 56.4 4.7 0.00016 34.9 2.1 15 72-86 3-17 (205)
377 2fsf_A Preprotein translocase 56.3 18 0.00061 38.9 6.7 75 368-448 112-200 (853)
378 3nh6_A ATP-binding cassette SU 56.3 4.3 0.00015 38.3 1.8 27 67-95 78-104 (306)
379 1aky_A Adenylate kinase; ATP:A 56.3 5.2 0.00018 35.3 2.3 18 69-86 4-21 (220)
380 2pbr_A DTMP kinase, thymidylat 56.3 4.8 0.00016 34.5 2.1 15 72-86 3-17 (195)
381 3l0o_A Transcription terminati 56.2 15 0.00053 35.7 5.7 36 50-86 157-192 (427)
382 2ipc_A Preprotein translocase 56.2 28 0.00094 37.8 8.0 62 366-433 115-177 (997)
383 3asz_A Uridine kinase; cytidin 56.1 4.1 0.00014 35.7 1.6 17 69-85 6-22 (211)
384 1nkt_A Preprotein translocase 56.0 21 0.00072 38.6 7.2 76 367-448 148-237 (922)
385 2pez_A Bifunctional 3'-phospho 55.7 4.6 0.00016 34.3 1.8 18 69-86 5-22 (179)
386 3tif_A Uncharacterized ABC tra 55.5 5 0.00017 36.1 2.1 17 68-84 30-46 (235)
387 2if2_A Dephospho-COA kinase; a 55.5 4.5 0.00016 35.2 1.8 16 71-86 3-18 (204)
388 1f9v_A Kinesin-like protein KA 55.5 5.7 0.0002 38.1 2.6 36 51-86 62-102 (347)
389 2plr_A DTMP kinase, probable t 55.4 5 0.00017 35.0 2.1 18 69-86 4-21 (213)
390 1svm_A Large T antigen; AAA+ f 55.2 7.2 0.00024 37.9 3.3 28 58-85 158-185 (377)
391 1nlf_A Regulatory protein REPA 55.1 3.3 0.00011 38.3 0.8 22 67-88 28-49 (279)
392 1bg2_A Kinesin; motor protein, 55.0 8.1 0.00028 36.7 3.5 37 50-86 53-95 (325)
393 1r6b_X CLPA protein; AAA+, N-t 55.0 1.8 6.1E-05 46.7 -1.2 16 71-86 490-505 (758)
394 1zak_A Adenylate kinase; ATP:A 54.8 4.8 0.00016 35.7 1.8 18 69-86 5-22 (222)
395 2qm8_A GTPase/ATPase; G protei 54.7 15 0.00052 35.0 5.5 48 57-108 43-90 (337)
396 3nwj_A ATSK2; P loop, shikimat 54.7 6.2 0.00021 35.9 2.6 18 69-86 48-65 (250)
397 2vli_A Antibiotic resistance p 54.5 4.3 0.00015 34.5 1.4 18 69-86 5-22 (183)
398 2l82_A Designed protein OR32; 54.2 69 0.0024 24.3 7.7 123 374-504 5-136 (162)
399 3sr0_A Adenylate kinase; phosp 53.9 5.6 0.00019 35.0 2.1 15 72-86 3-17 (206)
400 3m6a_A ATP-dependent protease 53.6 8.6 0.00029 39.5 3.7 19 68-86 107-125 (543)
401 2ce7_A Cell division protein F 53.5 5.2 0.00018 40.3 2.0 18 69-86 49-66 (476)
402 1e4v_A Adenylate kinase; trans 53.4 5.2 0.00018 35.2 1.8 16 71-86 2-17 (214)
403 1sxj_A Activator 1 95 kDa subu 53.3 6.3 0.00022 40.2 2.7 17 70-86 78-94 (516)
404 2h58_A Kinesin-like protein KI 53.2 9 0.00031 36.4 3.5 19 68-86 78-98 (330)
405 2bbw_A Adenylate kinase 4, AK4 52.9 5.8 0.0002 35.8 2.1 17 69-85 27-43 (246)
406 3qf7_A RAD50; ABC-ATPase, ATPa 52.9 5.6 0.00019 38.5 2.1 16 71-86 25-40 (365)
407 1htw_A HI0065; nucleotide-bind 52.9 6.4 0.00022 32.9 2.2 26 68-95 32-57 (158)
408 2cbz_A Multidrug resistance-as 52.7 5.9 0.0002 35.7 2.1 17 68-84 30-46 (237)
409 3a4m_A L-seryl-tRNA(SEC) kinas 52.7 5.4 0.00018 36.5 1.8 17 70-86 5-21 (260)
410 3tlx_A Adenylate kinase 2; str 52.7 5.9 0.0002 35.8 2.1 18 69-86 29-46 (243)
411 2xb4_A Adenylate kinase; ATP-b 52.6 5.9 0.0002 35.2 2.1 15 72-86 3-17 (223)
412 4etp_A Kinesin-like protein KA 52.6 8.9 0.0003 37.6 3.5 36 51-86 118-158 (403)
413 2vvg_A Kinesin-2; motor protei 52.1 9.5 0.00032 36.6 3.5 37 50-86 65-107 (350)
414 1ak2_A Adenylate kinase isoenz 51.9 6.7 0.00023 35.0 2.3 18 69-86 16-33 (233)
415 2zfi_A Kinesin-like protein KI 51.9 9.5 0.00033 36.9 3.5 34 53-86 68-107 (366)
416 1t5c_A CENP-E protein, centrom 51.7 8.8 0.0003 36.8 3.2 37 50-86 53-95 (349)
417 3umf_A Adenylate kinase; rossm 51.7 6.2 0.00021 35.0 2.0 18 69-86 29-46 (217)
418 2grj_A Dephospho-COA kinase; T 51.7 6.5 0.00022 34.1 2.1 16 71-86 14-29 (192)
419 4e22_A Cytidylate kinase; P-lo 51.5 6.7 0.00023 35.6 2.3 18 69-86 27-44 (252)
420 2y65_A Kinesin, kinesin heavy 51.4 10 0.00035 36.6 3.7 37 50-86 60-102 (365)
421 2nr8_A Kinesin-like protein KI 51.3 9 0.00031 36.9 3.2 35 52-86 81-121 (358)
422 3gbj_A KIF13B protein; kinesin 51.2 9 0.00031 36.9 3.2 35 52-86 70-110 (354)
423 3b6u_A Kinesin-like protein KI 51.1 9.1 0.00031 37.0 3.2 36 51-86 78-119 (372)
424 1sgw_A Putative ABC transporte 51.1 7.9 0.00027 34.3 2.6 18 68-85 34-51 (214)
425 3cf2_A TER ATPase, transitiona 51.0 27 0.00092 37.6 7.1 18 69-86 511-528 (806)
426 1uf9_A TT1252 protein; P-loop, 50.8 6 0.0002 34.2 1.8 16 71-86 10-25 (203)
427 4gl2_A Interferon-induced heli 50.8 5.9 0.0002 42.0 2.1 73 372-448 57-142 (699)
428 1vht_A Dephospho-COA kinase; s 50.5 6.5 0.00022 34.6 2.0 17 70-86 5-21 (218)
429 1v8k_A Kinesin-like protein KI 50.3 9.6 0.00033 37.4 3.3 36 51-86 131-172 (410)
430 3qks_A DNA double-strand break 50.2 11 0.00037 33.0 3.3 16 70-85 24-39 (203)
431 1c9k_A COBU, adenosylcobinamid 50.0 13 0.00043 31.9 3.6 33 72-112 2-34 (180)
432 3dkp_A Probable ATP-dependent 50.0 12 0.0004 33.6 3.7 76 370-448 97-181 (245)
433 1fuu_A Yeast initiation factor 49.9 29 0.00099 33.3 6.8 74 370-448 88-168 (394)
434 2yjt_D ATP-dependent RNA helic 55.4 3.4 0.00012 34.9 0.0 21 100-120 29-49 (170)
435 2ghi_A Transport protein; mult 49.5 7.1 0.00024 35.7 2.1 18 68-85 45-62 (260)
436 3eiq_A Eukaryotic initiation f 49.5 95 0.0033 29.7 10.6 76 370-448 107-189 (414)
437 3u06_A Protein claret segregat 49.3 10 0.00035 37.2 3.3 36 51-86 116-156 (412)
438 3cmw_A Protein RECA, recombina 49.3 16 0.00054 42.8 5.3 49 58-110 21-71 (1706)
439 1x88_A Kinesin-like protein KI 49.2 9.1 0.00031 36.9 2.9 37 50-86 64-106 (359)
440 1m7g_A Adenylylsulfate kinase; 49.2 7.2 0.00024 34.2 2.0 18 69-86 25-42 (211)
441 2p5t_B PEZT; postsegregational 49.0 5.6 0.00019 36.2 1.3 18 69-86 32-49 (253)
442 2rep_A Kinesin-like protein KI 48.9 6.7 0.00023 38.1 1.9 37 50-86 92-133 (376)
443 2owm_A Nckin3-434, related to 48.9 11 0.00038 37.4 3.5 34 53-86 115-154 (443)
444 3auy_A DNA double-strand break 48.7 6.5 0.00022 38.2 1.8 16 70-85 26-41 (371)
445 3be4_A Adenylate kinase; malar 48.6 6.8 0.00023 34.6 1.8 17 70-86 6-22 (217)
446 3cob_A Kinesin heavy chain-lik 48.5 8.5 0.00029 37.2 2.6 36 51-86 57-97 (369)
447 2vhj_A Ntpase P4, P4; non- hyd 48.1 9.2 0.00032 36.2 2.7 20 69-88 123-142 (331)
448 2pze_A Cystic fibrosis transme 48.1 8.3 0.00028 34.5 2.3 18 68-85 33-50 (229)
449 3gfo_A Cobalt import ATP-bindi 48.1 8.1 0.00028 35.7 2.2 18 68-85 33-50 (275)
450 3tbk_A RIG-I helicase domain; 48.0 25 0.00085 35.6 6.3 74 371-448 52-133 (555)
451 2ff7_A Alpha-hemolysin translo 48.0 8.4 0.00029 34.9 2.3 18 68-85 34-51 (247)
452 1tf7_A KAIC; homohexamer, hexa 47.7 15 0.00051 37.5 4.4 48 58-108 27-75 (525)
453 1ls1_A Signal recognition part 47.7 16 0.00056 34.0 4.4 36 69-108 98-133 (295)
454 1sq5_A Pantothenate kinase; P- 47.6 17 0.00057 34.1 4.4 25 69-95 80-104 (308)
455 4a2p_A RIG-I, retinoic acid in 47.5 30 0.001 35.1 6.8 74 371-448 55-136 (556)
456 1np6_A Molybdopterin-guanine d 47.4 23 0.00079 30.0 4.9 16 70-85 7-22 (174)
457 2wbe_C Bipolar kinesin KRP-130 47.3 9.9 0.00034 36.9 2.8 36 51-86 77-118 (373)
458 1mv5_A LMRA, multidrug resista 47.3 6.8 0.00023 35.4 1.6 18 68-85 27-44 (243)
459 2heh_A KIF2C protein; kinesin, 47.1 12 0.00041 36.4 3.4 37 51-87 111-153 (387)
460 1b0u_A Histidine permease; ABC 47.1 8.1 0.00028 35.4 2.1 18 68-85 31-48 (262)
461 1pzn_A RAD51, DNA repair and r 47.0 13 0.00043 35.7 3.5 20 69-88 131-150 (349)
462 2zu0_C Probable ATP-dependent 46.6 8.3 0.00028 35.4 2.1 18 68-85 45-62 (267)
463 1vpl_A ABC transporter, ATP-bi 46.6 8.4 0.00029 35.2 2.1 18 68-85 40-57 (256)
464 2pcj_A ABC transporter, lipopr 46.6 8.2 0.00028 34.4 2.0 17 68-84 29-45 (224)
465 1g6h_A High-affinity branched- 46.6 9 0.00031 34.9 2.3 17 68-84 32-48 (257)
466 1ji0_A ABC transporter; ATP bi 46.5 9.1 0.00031 34.5 2.3 18 68-85 31-48 (240)
467 1uj2_A Uridine-cytidine kinase 46.4 8.5 0.00029 34.9 2.1 16 71-86 24-39 (252)
468 1hv8_A Putative ATP-dependent 46.3 53 0.0018 30.9 8.0 74 370-448 73-153 (367)
469 2dpy_A FLII, flagellum-specifi 46.3 16 0.00056 36.2 4.3 37 56-95 145-181 (438)
470 2ixe_A Antigen peptide transpo 46.2 8.5 0.00029 35.4 2.1 17 68-84 44-60 (271)
471 2jeo_A Uridine-cytidine kinase 46.1 8.2 0.00028 34.8 2.0 18 69-86 25-42 (245)
472 1j8m_F SRP54, signal recogniti 46.0 19 0.00063 33.7 4.4 35 70-108 99-133 (297)
473 2yz2_A Putative ABC transporte 45.9 8.7 0.0003 35.3 2.1 18 68-85 32-49 (266)
474 1ypw_A Transitional endoplasmi 45.9 8.7 0.0003 41.6 2.4 19 68-86 237-255 (806)
475 2obl_A ESCN; ATPase, hydrolase 45.9 14 0.00047 35.5 3.6 37 56-95 59-95 (347)
476 2f1r_A Molybdopterin-guanine d 45.8 7 0.00024 33.2 1.3 16 71-86 4-19 (171)
477 4a2q_A RIG-I, retinoic acid in 45.8 42 0.0014 36.1 7.8 74 371-448 296-377 (797)
478 4g1u_C Hemin import ATP-bindin 45.6 9.4 0.00032 35.1 2.3 18 68-85 36-53 (266)
479 2olj_A Amino acid ABC transpor 45.5 8.9 0.0003 35.2 2.1 18 68-85 49-66 (263)
480 3cmu_A Protein RECA, recombina 45.3 18 0.00061 43.1 4.9 49 58-110 1068-1118(2050)
481 2dhr_A FTSH; AAA+ protein, hex 45.2 8.5 0.00029 39.0 2.0 17 70-86 65-81 (499)
482 1ltq_A Polynucleotide kinase; 45.1 8.9 0.0003 35.7 2.1 16 71-86 4-19 (301)
483 3hjn_A DTMP kinase, thymidylat 45.0 24 0.00081 30.6 4.7 35 72-110 3-38 (197)
484 2qi9_C Vitamin B12 import ATP- 44.8 10 0.00034 34.5 2.3 17 68-84 25-41 (249)
485 3fvq_A Fe(3+) IONS import ATP- 44.6 10 0.00036 36.5 2.5 26 68-95 29-54 (359)
486 2p6r_A Afuhel308 helicase; pro 44.6 33 0.0011 36.3 6.7 72 370-448 67-144 (702)
487 3ake_A Cytidylate kinase; CMP 44.5 9.6 0.00033 33.0 2.1 16 71-86 4-19 (208)
488 2d2e_A SUFC protein; ABC-ATPas 44.3 10 0.00035 34.4 2.3 18 68-85 28-45 (250)
489 2yyz_A Sugar ABC transporter, 44.2 12 0.0004 36.1 2.8 26 68-95 28-53 (359)
490 1r6b_X CLPA protein; AAA+, N-t 44.1 15 0.00051 39.5 3.9 26 68-94 206-231 (758)
491 2f6r_A COA synthase, bifunctio 43.9 8.7 0.0003 35.6 1.8 16 71-86 77-92 (281)
492 4eaq_A DTMP kinase, thymidylat 43.8 10 0.00036 33.8 2.3 19 68-86 25-43 (229)
493 3gk5_A Uncharacterized rhodane 43.8 23 0.0008 27.0 4.0 38 370-410 54-91 (108)
494 2v3c_C SRP54, signal recogniti 43.7 21 0.00072 35.3 4.6 35 70-108 100-134 (432)
495 2nq2_C Hypothetical ABC transp 43.6 10 0.00036 34.4 2.2 17 68-84 30-46 (253)
496 3r20_A Cytidylate kinase; stru 43.5 10 0.00034 34.1 2.1 17 70-86 10-26 (233)
497 2ihy_A ABC transporter, ATP-bi 43.4 11 0.00037 35.0 2.3 18 68-85 46-63 (279)
498 1gtv_A TMK, thymidylate kinase 43.2 5.1 0.00017 35.1 0.0 15 72-86 3-17 (214)
499 2ga8_A Hypothetical 39.9 kDa p 43.2 16 0.00053 35.1 3.4 16 71-86 26-41 (359)
500 3foj_A Uncharacterized protein 43.0 22 0.00075 26.6 3.7 38 370-410 55-92 (100)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-54 Score=442.56 Aligned_cols=378 Identities=25% Similarity=0.411 Sum_probs=315.7
Q ss_pred CCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
.|..+.+|++++ |++.+.+.+.++||..|+++|.++|+.++. +++++++||||||||++|++|+++++..
T Consensus 51 ~p~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 51 VPQPIQHFTSAD------LRDIIIDNVNKSGYKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp CCCCCCCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCcCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 455677888888 999999999999999999999999999876 8999999999999999999999998876
Q ss_pred hc----cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEE
Q 010028 97 RA----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVG 172 (520)
Q Consensus 97 ~~----~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (520)
.. ..++++||++||++|+.| +.+.+.++....++++.
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q---------------------------------------~~~~~~~~~~~~~~~~~ 161 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQ---------------------------------------IFNEARKFAFESYLKIG 161 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHH---------------------------------------HHHHHHHHTTTSSCCCC
T ss_pred cccccccCCccEEEEecCHHHHHH---------------------------------------HHHHHHHHhccCCcEEE
Confidence 42 236789999999999999 55555666666678889
Q ss_pred eccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH
Q 010028 173 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 252 (520)
Q Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~ 252 (520)
+++|+.....+... +..+++|+|+||++|.+++.+ ....+.+++++|+||||++++.+
T Consensus 162 ~~~gg~~~~~~~~~---------------------l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~g 219 (434)
T 2db3_A 162 IVYGGTSFRHQNEC---------------------ITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMG 219 (434)
T ss_dssp EECTTSCHHHHHHH---------------------HTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTT
T ss_pred EEECCCCHHHHHHH---------------------hhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccC
Confidence 99999876655433 335789999999999999886 34678899999999999999988
Q ss_pred hhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCcee
Q 010028 253 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 332 (520)
Q Consensus 253 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~ 332 (520)
+...+..++..... .+..+++++|||++.....+...++.++..
T Consensus 220 f~~~~~~i~~~~~~------------------------------------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~ 263 (434)
T 2db3_A 220 FSEDMRRIMTHVTM------------------------------------RPEHQTLMFSATFPEEIQRMAGEFLKNYVF 263 (434)
T ss_dssp THHHHHHHHHCTTS------------------------------------CSSCEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred cHHHHHHHHHhcCC------------------------------------CCCceEEEEeccCCHHHHHHHHHhccCCEE
Confidence 88888888876432 124578999999988888888888888877
Q ss_pred eecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHH
Q 010028 333 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 412 (520)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~ 412 (520)
+...... .....+.+.........+...+..++..... ++||||++++.++.+++.|...+ +.+..+||+++..+
T Consensus 264 i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~---~~~~~lhg~~~~~~ 338 (434)
T 2db3_A 264 VAIGIVG-GACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKE---FPTTSIHGDRLQSQ 338 (434)
T ss_dssp EEESSTT-CCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTT---CCEEEESTTSCHHH
T ss_pred EEecccc-ccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCC---CCEEEEeCCCCHHH
Confidence 7665433 2233444555555666788888888887654 49999999999999999999865 78999999999999
Q ss_pred HHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEec-chHHHHHHHHH
Q 010028 413 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVKRFKKLLQ 491 (520)
Q Consensus 413 r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~-~~~~~~~~~~~ 491 (520)
|.++++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|+.|.+++|+.+ ++......+.+
T Consensus 339 R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~ 418 (434)
T 2db3_A 339 REQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK 418 (434)
T ss_dssp HHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999994 56777777777
Q ss_pred HhcCCCCCcccCCchhhh
Q 010028 492 KADNDSCPIHSIPSSLIE 509 (520)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~ 509 (520)
.+...+ +++|+.+.+
T Consensus 419 ~l~~~~---~~vp~~l~~ 433 (434)
T 2db3_A 419 ILEGSG---QTVPDFLRT 433 (434)
T ss_dssp HHHHTT---CCCCGGGC-
T ss_pred HHHHcC---CCCCHHHHh
Confidence 776655 677776543
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.7e-52 Score=424.98 Aligned_cols=383 Identities=27% Similarity=0.422 Sum_probs=312.4
Q ss_pred cCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..|.++.+|++++ |++.+.+++..+||..|+++|.++|+.+.. ++++++.||||+|||++|++|+++.+.
T Consensus 9 ~~p~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~ 78 (417)
T 2i4i_A 9 NCPPHIESFSDVE------MGEIIMGNIELTRYTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIY 78 (417)
T ss_dssp TCCCCCSSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCcccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3567778899998 999999999999999999999999998876 899999999999999999999999876
Q ss_pred hhcc-----------------ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHH
Q 010028 96 NRAV-----------------RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKD 158 (520)
Q Consensus 96 ~~~~-----------------~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (520)
.... .++++||++||++|+.|+ .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~---------------------------------------~~ 119 (417)
T 2i4i_A 79 SDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQI---------------------------------------YE 119 (417)
T ss_dssp HHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHH---------------------------------------HH
T ss_pred hccccchhhccccccccccccCCccEEEECCcHHHHHHH---------------------------------------HH
Confidence 5421 236799999999999994 44
Q ss_pred HHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCccccccc
Q 010028 159 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 238 (520)
Q Consensus 159 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~ 238 (520)
.+..+....++++..++|+.....+... +..+++|+|+||+++.+.+.. ....+..++
T Consensus 120 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~ 177 (417)
T 2i4i_A 120 EARKFSYRSRVRPCVVYGGADIGQQIRD---------------------LERGCHLLVATPGRLVDMMER-GKIGLDFCK 177 (417)
T ss_dssp HHHHHHTTSSCCEEEECSSSCHHHHHHH---------------------HTTCCSEEEECHHHHHHHHHT-TSBCCTTCC
T ss_pred HHHHHhCcCCceEEEEECCCCHHHHHHH---------------------hhCCCCEEEEChHHHHHHHHc-CCcChhhCc
Confidence 4555555567888999998876655443 334679999999999998886 346688899
Q ss_pred EEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCC
Q 010028 239 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 318 (520)
Q Consensus 239 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 318 (520)
+||+||||++.+.++...+..++....... ....+++++|||++..
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~~~~----------------------------------~~~~~~i~~SAT~~~~ 223 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDTMPP----------------------------------KGVRHTMMFSATFPKE 223 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSSCCC----------------------------------BTTBEEEEEESCCCHH
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhccCCC----------------------------------cCCcEEEEEEEeCCHH
Confidence 999999999998887777777765422210 1245789999999877
Q ss_pred chhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCC
Q 010028 319 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGEL 397 (520)
Q Consensus 319 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~ 397 (520)
...+....+.++......... .....+.+.........+...+..++... .++++||||+++++++.+++.|+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-- 300 (417)
T 2i4i_A 224 IQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-- 300 (417)
T ss_dssp HHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC--
Confidence 777777777777665554332 22334444445555667788888888876 57789999999999999999999865
Q ss_pred ceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEE
Q 010028 398 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 477 (520)
Q Consensus 398 ~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 477 (520)
+.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++|
T Consensus 301 -~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (417)
T 2i4i_A 301 -YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 379 (417)
T ss_dssp -CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEE
T ss_pred -CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchHHHHHHHHHHhcCCCCCcccCCchhhhh
Q 010028 478 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 510 (520)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (520)
+.+.+...++++++.+.... ..++..+.+.
T Consensus 380 ~~~~~~~~~~~l~~~~~~~~---~~~~~~l~~~ 409 (417)
T 2i4i_A 380 FNERNINITKDLLDLLVEAK---QEVPSWLENM 409 (417)
T ss_dssp ECGGGGGGHHHHHHHHHHTT---CCCCHHHHHH
T ss_pred EccccHHHHHHHHHHHHHhc---CcCCHHHHHH
Confidence 99999999999998887655 5666655443
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.1e-51 Score=417.67 Aligned_cols=362 Identities=24% Similarity=0.418 Sum_probs=303.2
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
...+|++++ +++.+.+.+..+||..|+++|.++++.++. ++++++.+|||+|||+++++|+++.+... .
T Consensus 35 ~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~ 103 (410)
T 2j0s_A 35 VTPTFDTMG------LREDLLRGIYAYGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-V 103 (410)
T ss_dssp CCCSGGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-S
T ss_pred CCCCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-c
Confidence 345688887 999999999999999999999999999876 89999999999999999999999876533 3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||++|+++|+.| +.+.+..++...++.+...+|+..
T Consensus 104 ~~~~~lil~Pt~~L~~q---------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~ 144 (410)
T 2j0s_A 104 RETQALILAPTRELAVQ---------------------------------------IQKGLLALGDYMNVQCHACIGGTN 144 (410)
T ss_dssp CSCCEEEECSSHHHHHH---------------------------------------HHHHHHHHTTTTTCCEEEECTTSC
T ss_pred CCceEEEEcCcHHHHHH---------------------------------------HHHHHHHHhccCCeEEEEEECCCC
Confidence 56789999999999999 555556666666788888899887
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
...+... +..+++|+|+||+.+.+.+.. ....+..+++||+||||++.+.++...+..
T Consensus 145 ~~~~~~~---------------------~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 202 (410)
T 2j0s_A 145 VGEDIRK---------------------LDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYD 202 (410)
T ss_dssp HHHHHHH---------------------HHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred HHHHHHH---------------------hhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHHhhhhHHHHHH
Confidence 6665443 234679999999999998886 346678899999999999988777777776
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
++..+.. ..+++++|||++.....+....+.+|..+......
T Consensus 203 i~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (410)
T 2j0s_A 203 VYRYLPP--------------------------------------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE 244 (410)
T ss_dssp HHTTSCT--------------------------------------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG
T ss_pred HHHhCcc--------------------------------------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc
Confidence 6654432 34789999999877777777777777766554433
Q ss_pred ccCccccchhhhhccC-CCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHH
Q 010028 340 YKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 418 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~-~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~ 418 (520)
.. ...+.+....... ..+...+..++.....+++||||++++.++.+++.|...+ +.+..+||+++..+|.++++
T Consensus 245 ~~-~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~ 320 (410)
T 2j0s_A 245 LT-LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN---FTVSSMHGDMPQKERESIMK 320 (410)
T ss_dssp CS-CTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHH
T ss_pred cc-CCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC---CceEEeeCCCCHHHHHHHHH
Confidence 22 2333343333333 3477888888888888899999999999999999999865 78999999999999999999
Q ss_pred HHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 419 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 419 ~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
.|++|+.+|||+|+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++|+.+.+...++++.+.++.
T Consensus 321 ~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 321 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp HHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred HHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887764
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.1e-50 Score=411.07 Aligned_cols=372 Identities=27% Similarity=0.468 Sum_probs=305.2
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
...+|++++ |++.+.+++.++||..|+++|.++++.+.. ++++++.+|||+|||+++++|++..+... .
T Consensus 19 ~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~-~ 87 (400)
T 1s2m_A 19 KGNTFEDFY------LKRELLMGIFEAGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPK-L 87 (400)
T ss_dssp --CCGGGGC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTT-S
T ss_pred ccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhc-c
Confidence 456788888 999999999999999999999999998876 78999999999999999999999877543 2
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||++|+++|+.| +.+.+..+....++.+...+|+..
T Consensus 88 ~~~~~lil~P~~~L~~q---------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~ 128 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQ---------------------------------------TSQVVRTLGKHCGISCMVTTGGTN 128 (400)
T ss_dssp CSCCEEEECSSHHHHHH---------------------------------------HHHHHHHHTTTTTCCEEEECSSSC
T ss_pred CCccEEEEcCCHHHHHH---------------------------------------HHHHHHHHhcccCceEEEEeCCcc
Confidence 45689999999999999 444555555556788888888877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
...+... ....++|+|+||+.+.+.+.. ....+.++++||+||||++.+..+...+..
T Consensus 129 ~~~~~~~---------------------~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~ 186 (400)
T 1s2m_A 129 LRDDILR---------------------LNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQ 186 (400)
T ss_dssp HHHHHHH---------------------TTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHH
T ss_pred hHHHHHH---------------------hcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCchHhhhhchHHHHHH
Confidence 5554332 335679999999999888876 345678899999999999988877777777
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
++..+.. ..+++++|||++..........+..|..+.....
T Consensus 187 i~~~~~~--------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~- 227 (400)
T 1s2m_A 187 ILSFLPP--------------------------------------THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE- 227 (400)
T ss_dssp HHTTSCS--------------------------------------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-
T ss_pred HHHhCCc--------------------------------------CceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-
Confidence 6654332 3468999999987776666666666655443322
Q ss_pred ccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHH
Q 010028 340 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~ 419 (520)
.....+.++........+...+..++.....+++||||++++.++.+++.|+..+ ..+..+||+++..+|.++++.
T Consensus 228 -~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~ 303 (400)
T 1s2m_A 228 -LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG---YSCYYSHARMKQQERNKVFHE 303 (400)
T ss_dssp -CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT---CCEEEECTTSCHHHHHHHHHH
T ss_pred -cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC---CCeEEecCCCCHHHHHHHHHH
Confidence 1223334444445556677888888888888999999999999999999999876 789999999999999999999
Q ss_pred HHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCC
Q 010028 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 499 (520)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 499 (520)
|++|+.+|||||+++++|+|+|++++||+++.|.|...|+||+||+||.|+.|.|++|+++.+...++++.+.++..-
T Consensus 304 f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~-- 381 (400)
T 1s2m_A 304 FRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEI-- 381 (400)
T ss_dssp HHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCC--
T ss_pred HhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998886533
Q ss_pred cccCCchhhh
Q 010028 500 IHSIPSSLIE 509 (520)
Q Consensus 500 ~~~~~~~~~~ 509 (520)
.++|..+.+
T Consensus 382 -~~~~~~~~~ 390 (400)
T 1s2m_A 382 -AAIPATIDK 390 (400)
T ss_dssp -EECCSSCCG
T ss_pred -ccccccccc
Confidence 455554443
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-50 Score=415.27 Aligned_cols=374 Identities=25% Similarity=0.412 Sum_probs=293.1
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
..+|++++ +++.+.+.+..+|+..|+++|.++++.++. ++++++.+|||+|||+++++++++.+... ..
T Consensus 39 ~~~f~~~~------l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~ 107 (414)
T 3eiq_A 39 VDSFDDMN------LSESLLRGIYAYGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELD-LK 107 (414)
T ss_dssp CCCGGGGC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTT-SC
T ss_pred hcCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhc-CC
Confidence 35566666 899999999999999999999999999886 88999999999999999999999887654 35
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
+.++||++|+++|+.| +.+.+..+....+..+...+|+...
T Consensus 108 ~~~~lil~P~~~L~~q---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQ---------------------------------------IQKVVMALGDYMGASCHACIGGTNV 148 (414)
T ss_dssp SCCEEEECSSHHHHHH---------------------------------------HHHHHHHHGGGSCCCEEECCCCTTH
T ss_pred ceeEEEEeChHHHHHH---------------------------------------HHHHHHHHhcccCceEEEEECCcch
Confidence 6689999999999999 5555566666667888888888776
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+...+. ...++|+|+||+++.+.+.. ....+..+++||+||||++.+.++...+..+
T Consensus 149 ~~~~~~~~--------------------~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~ 207 (414)
T 3eiq_A 149 RAEVQKLQ--------------------MEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 207 (414)
T ss_dssp HHHHHHHT--------------------TTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHh--------------------cCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHHhhccCcHHHHHHH
Confidence 65544322 25679999999999998876 3466788999999999999888877777777
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccc
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 340 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (520)
+..+.. ..+++++|||++..........+.++..+.......
T Consensus 208 ~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (414)
T 3eiq_A 208 FQKLNS--------------------------------------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL 249 (414)
T ss_dssp HTTSCT--------------------------------------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCC
T ss_pred HHhCCC--------------------------------------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCcc
Confidence 665432 447899999998777777777788777665554433
Q ss_pred cCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH
Q 010028 341 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f 420 (520)
........+........+...+..++.....+++||||++++.++.+++.|...+ ..+..+||+++..+|.++++.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 250 TLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD---FTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp CTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT---CCCEEC---CHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC---CeEEEecCCCCHHHHHHHHHHH
Confidence 3322222233333445588888888888888999999999999999999999765 7899999999999999999999
Q ss_pred HcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCCc
Q 010028 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 500 (520)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (520)
++|+.+|||+|+++++|+|+|++++||+++.|.|...|+||+||+||.|+.|.|++|+.+.+...++++.+.++..-
T Consensus 327 ~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 403 (414)
T 3eiq_A 327 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSI--- 403 (414)
T ss_dssp SCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCC---
T ss_pred HcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776543
Q ss_pred ccCCchhhh
Q 010028 501 HSIPSSLIE 509 (520)
Q Consensus 501 ~~~~~~~~~ 509 (520)
+++|.++.+
T Consensus 404 ~~~~~~~~~ 412 (414)
T 3eiq_A 404 EEMPLNVAD 412 (414)
T ss_dssp EECCC----
T ss_pred cccChhhhh
Confidence 556655543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.5e-49 Score=403.51 Aligned_cols=362 Identities=25% Similarity=0.359 Sum_probs=295.3
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
.+.|++++ |++.+.+++..+||..|+++|.++++.+.. ++++++.+|||+|||++++++++..+... ..
T Consensus 7 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~ 75 (391)
T 1xti_A 7 SSGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TG 75 (391)
T ss_dssp --CGGGGC------CCHHHHHHHHHHSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-TT
T ss_pred CCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-CC
Confidence 45688888 999999999999999999999999998876 79999999999999999999999876543 24
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-cceEEeccCccc
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSS 179 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~~ 179 (520)
+.++||++|+++|+.|+++ .+..+.... ++++..++|+..
T Consensus 76 ~~~~lil~P~~~L~~q~~~---------------------------------------~~~~~~~~~~~~~~~~~~g~~~ 116 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISK---------------------------------------EYERFSKYMPNVKVAVFFGGLS 116 (391)
T ss_dssp CCCEEEECSCHHHHHHHHH---------------------------------------HHHHHTTTCTTCCEEEECTTSC
T ss_pred CeeEEEECCCHHHHHHHHH---------------------------------------HHHHHHhhCCCeEEEEEeCCCC
Confidence 5689999999999999544 444444333 688888899877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhhhHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLP 258 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~~l~ 258 (520)
...+...+. ...++|+|+||+++...+.. ....+.++++||+||||++.+ ..+...+.
T Consensus 117 ~~~~~~~~~--------------------~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~~~~~~~~~~ 175 (391)
T 1xti_A 117 IKKDEEVLK--------------------KNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQ 175 (391)
T ss_dssp HHHHHHHHH--------------------HSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHh--------------------cCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHHHHhhccchHHHHH
Confidence 655543322 13469999999999988876 346678999999999999876 35555566
Q ss_pred HHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccc
Q 010028 259 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 338 (520)
Q Consensus 259 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~ 338 (520)
.++.... ...+++++|||++..........+.+|..+.....
T Consensus 176 ~~~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 217 (391)
T 1xti_A 176 EIFRMTP--------------------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 217 (391)
T ss_dssp HHHHTSC--------------------------------------SSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCC
T ss_pred HHHhhCC--------------------------------------CCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCc
Confidence 6655432 23478999999998888888777887776655544
Q ss_pred cccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHH
Q 010028 339 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 418 (520)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~ 418 (520)
.......+...........+...+..++....++++||||+++++++.+++.|...+ ..+..+||+++..+|.++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~ 294 (391)
T 1xti_A 218 TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQ 294 (391)
T ss_dssp CCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHH
T ss_pred cccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHH
Confidence 333334444455555566778888888888888999999999999999999999865 78999999999999999999
Q ss_pred HHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch-HHHHHHHHHHhc
Q 010028 419 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQKAD 494 (520)
Q Consensus 419 ~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~-~~~~~~~~~~~~ 494 (520)
.|++|+.+|||||+++++|+|+|++++||+++.|.|...|+||+||+||.|+.|.+++|+.+.+ .+.++.+.+.+.
T Consensus 295 ~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (391)
T 1xti_A 295 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 371 (391)
T ss_dssp HHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTT
T ss_pred HHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999764 455666666543
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.4e-49 Score=406.53 Aligned_cols=364 Identities=23% Similarity=0.359 Sum_probs=292.2
Q ss_pred cccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc
Q 010028 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (520)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~ 98 (520)
....+|++++ +++.+.+.+.++||..|+++|.++++.++.. .++++++.+|||+|||++|++|+++.+...
T Consensus 22 ~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~- 92 (412)
T 3fht_A 22 YSVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA- 92 (412)
T ss_dssp CCSSCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-
T ss_pred cccCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhc-
Confidence 4567788888 9999999999999999999999999998872 248999999999999999999999887654
Q ss_pred cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc-ccceEEeccCc
Q 010028 99 VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQ 177 (520)
Q Consensus 99 ~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~ 177 (520)
..++++||++|+++|+.|++++ +..+... .+..+....++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~ 133 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKV---------------------------------------IEQMGKFYPELKLAYAVRG 133 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHH---------------------------------------HHHHTTTSTTCCEEEECTT
T ss_pred CCCCCEEEECCCHHHHHHHHHH---------------------------------------HHHHHhhcccceEEEeecC
Confidence 3556899999999999995544 3333332 25666666666
Q ss_pred cchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhhh
Q 010028 178 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAW 256 (520)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~~ 256 (520)
...... ....++|+|+||+++.+.+...+...+.++++||+||||++.+ ..+...
T Consensus 134 ~~~~~~------------------------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~ 189 (412)
T 3fht_A 134 NKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 189 (412)
T ss_dssp CCCCTT------------------------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHH
T ss_pred cchhhh------------------------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHH
Confidence 442221 1235689999999999999776667789999999999999876 455555
Q ss_pred HHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecc
Q 010028 257 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 336 (520)
Q Consensus 257 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~ 336 (520)
+..+...+.. ..+++++|||++.....+....+.++..+...
T Consensus 190 ~~~~~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 231 (412)
T 3fht_A 190 SIRIQRMLPR--------------------------------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 231 (412)
T ss_dssp HHHHHHTSCT--------------------------------------TCEEEEEESCCCHHHHHHHHHHSSSCEEECCC
T ss_pred HHHHHhhCCC--------------------------------------CceEEEEEeecCHHHHHHHHHhcCCCeEEeec
Confidence 5555544322 35789999999887777777778887776655
Q ss_pred cccccCccccchhh-hhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHH
Q 010028 337 ETRYKLPERLESYK-LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 415 (520)
Q Consensus 337 ~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~ 415 (520)
...... ..+.+.. .......+...+..++.....+++||||+++++++.+++.|...+ ..+..+||+++..+|.+
T Consensus 232 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~ 307 (412)
T 3fht_A 232 REEETL-DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAA 307 (412)
T ss_dssp GGGSSC-TTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHH
T ss_pred cccccc-cCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHH
Confidence 443332 2233322 222334567778888888888999999999999999999999865 78999999999999999
Q ss_pred HHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCC------CCHHHHHHHHhhcccCCCCCcEEEEEecch-HHHHHH
Q 010028 416 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKK 488 (520)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~-~~~~~~ 488 (520)
+++.|++|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.++++++..+ ...++.
T Consensus 308 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 387 (412)
T 3fht_A 308 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 387 (412)
T ss_dssp HHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHH
Confidence 9999999999999999999999999999999999999 567899999999999999999999999765 777777
Q ss_pred HHHHhcCC
Q 010028 489 LLQKADND 496 (520)
Q Consensus 489 ~~~~~~~~ 496 (520)
+.+.++..
T Consensus 388 i~~~~~~~ 395 (412)
T 3fht_A 388 IQEHFNKK 395 (412)
T ss_dssp HHHHHTCC
T ss_pred HHHHHCCc
Confidence 77766543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.7e-49 Score=398.51 Aligned_cols=372 Identities=22% Similarity=0.324 Sum_probs=289.6
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
..+|++++ |++.+.+++.++|+..|+++|.++++.++.. .++++++++|||+|||++++++++..+... ..
T Consensus 4 ~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~ 74 (395)
T 3pey_A 4 AKSFDELG------LAPELLKGIYAMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-DA 74 (395)
T ss_dssp CCSSTTSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-CC
T ss_pred ccCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccC-CC
Confidence 46788888 9999999999999999999999999998872 238999999999999999999999877654 35
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
+.++||++|+++|+.|+ .+.+..+....++.+...+++...
T Consensus 75 ~~~~lil~P~~~L~~q~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 115 (395)
T 3pey_A 75 SPQAICLAPSRELARQT---------------------------------------LEVVQEMGKFTKITSQLIVPDSFE 115 (395)
T ss_dssp SCCEEEECSSHHHHHHH---------------------------------------HHHHHHHTTTSCCCEEEESTTSSC
T ss_pred CccEEEECCCHHHHHHH---------------------------------------HHHHHHHhcccCeeEEEEecCchh
Confidence 66899999999999994 444555555556667666665431
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhhhHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPT 259 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~~l~~ 259 (520)
.. ....++|+|+||+.+.+.+.. ....+.++++||+||||++.+ ..+...+..
T Consensus 116 ~~-------------------------~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 169 (395)
T 3pey_A 116 KN-------------------------KQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 169 (395)
T ss_dssp TT-------------------------SCBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHH
T ss_pred hh-------------------------ccCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHH
Confidence 11 123679999999999998876 446688999999999999876 455555555
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
+...... ..+++++|||++..........+..+.........
T Consensus 170 ~~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (395)
T 3pey_A 170 VKRFLPK--------------------------------------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE 211 (395)
T ss_dssp HHHTSCT--------------------------------------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG
T ss_pred HHHhCCC--------------------------------------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc
Confidence 5544322 34789999999877777777777766655554433
Q ss_pred ccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHH
Q 010028 340 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~ 419 (520)
.........+........+...+..++.....+++||||+++++++.+++.|+..+ ..+..+||+++..+|.++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 212 VNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEG---HEVSILHGDLQTQERDRLIDD 288 (395)
T ss_dssp CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHH
T ss_pred cccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHH
Confidence 22222222222222334466677777777788999999999999999999999865 789999999999999999999
Q ss_pred HHcCCceEEEEecccccCCCCCCCcEEEEccCCC------CHHHHHHHHhhcccCCCCCcEEEEEecch-HHHHHHHHHH
Q 010028 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQK 492 (520)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~-~~~~~~~~~~ 492 (520)
|++|+.+|||||+++++|+|+|++++||+++.|. |...|+||+||+||.|+.|.+++|+...+ ...++.+.+.
T Consensus 289 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~ 368 (395)
T 3pey_A 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY 368 (395)
T ss_dssp HHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999999999999998755 4555555554
Q ss_pred hcCCCCCcccCCchhhh
Q 010028 493 ADNDSCPIHSIPSSLIE 509 (520)
Q Consensus 493 ~~~~~~~~~~~~~~~~~ 509 (520)
+.. ..+..++....+
T Consensus 369 ~~~--~~~~~~~~~~~~ 383 (395)
T 3pey_A 369 FGD--IEMTRVPTDDWD 383 (395)
T ss_dssp TTS--CCCEECCSSCHH
T ss_pred hCC--ceeecCChHHHH
Confidence 442 223444444333
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-48 Score=390.14 Aligned_cols=356 Identities=28% Similarity=0.463 Sum_probs=290.7
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
+..+|++++ |++.+.+.+.++||..|+++|.++++.++. .++++++.+|||+|||++++++++..+...
T Consensus 4 ~~~~f~~~~------l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-- 72 (367)
T 1hv8_A 4 EYMNFNELN------LSDNILNAIRNKGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-- 72 (367)
T ss_dssp CCCCGGGSS------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--
T ss_pred ccCchhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--
Confidence 345688888 999999999999999999999999999876 237999999999999999999998876543
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||++|+++|+.| +.+.+..+....++.+...+|+..
T Consensus 73 ~~~~~lil~P~~~L~~q---------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~ 113 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQ---------------------------------------VADEIESLKGNKNLKIAKIYGGKA 113 (367)
T ss_dssp SSCCEEEECSCHHHHHH---------------------------------------HHHHHHHHHCSSCCCEEEECTTSC
T ss_pred CCCcEEEEcCCHHHHHH---------------------------------------HHHHHHHHhCCCCceEEEEECCcc
Confidence 46689999999999999 444555555556788888888877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
...+...+ ..++|+|+||+.+...+.. ....+.+++++|+||||++.+.++...+..
T Consensus 114 ~~~~~~~~----------------------~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 170 (367)
T 1hv8_A 114 IYPQIKAL----------------------KNANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEK 170 (367)
T ss_dssp HHHHHHHH----------------------HTCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHHHHTTTTHHHHHH
T ss_pred hHHHHhhc----------------------CCCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchHhhhhchHHHHHH
Confidence 65543322 2579999999999988876 345678899999999999988777666666
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
++..... ..+++++|||++..........+.++........
T Consensus 171 ~~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~- 211 (367)
T 1hv8_A 171 ILNACNK--------------------------------------DKRILLFSATMPREILNLAKKYMGDYSFIKAKIN- 211 (367)
T ss_dssp HHHTSCS--------------------------------------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-
T ss_pred HHHhCCC--------------------------------------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-
Confidence 6655332 3468999999987666666656655554433221
Q ss_pred ccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHH
Q 010028 340 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~ 419 (520)
..+...........+.+.+..++. ..+.++||||+++++++.+++.|+..+ ..+..+||+++..+|.++++.
T Consensus 212 ----~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~ 283 (367)
T 1hv8_A 212 ----ANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIG---FKAGAIHGDLSQSQREKVIRL 283 (367)
T ss_dssp ----SSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTT---CCEEEECSSSCHHHHHHHHHH
T ss_pred ----CCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcC---CCeEEeeCCCCHHHHHHHHHH
Confidence 233333344455566677776665 456789999999999999999999865 789999999999999999999
Q ss_pred HHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 420 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
|++|+.+|||+|+++++|+|+|++++||+++.|.|...|.||+||+||.|+.|.+++++++.+...++.+.+.++.
T Consensus 284 f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 284 FKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp HHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred HHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876653
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.4e-50 Score=409.62 Aligned_cols=371 Identities=26% Similarity=0.442 Sum_probs=166.7
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
....|++++ +++.+.+.+..+|+..|+++|.++++.+.. ++++++.+|||+|||+++++|+++.+... .
T Consensus 19 ~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~ 87 (394)
T 1fuu_A 19 VVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-V 87 (394)
T ss_dssp CCCSSGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-C
T ss_pred ccCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhcc-C
Confidence 345688888 999999999999999999999999999876 79999999999999999999999887654 3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||++|+++|+.| +.+.+..+....++++...+|+..
T Consensus 88 ~~~~~lil~P~~~L~~q---------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~ 128 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQ---------------------------------------IQKVVMALAFHMDIKVHACIGGTS 128 (394)
T ss_dssp CSCCEEEECSSHHHHHH---------------------------------------HHHHHHHHTTTSCCCEEEECSSCC
T ss_pred CCCCEEEEcCCHHHHHH---------------------------------------HHHHHHHHhccCCeeEEEEeCCCc
Confidence 56789999999999999 555555555556788899999877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
...+...+ ..++|+|+||+.+...+.. ....+.+++++|+||||++.+.++...+..
T Consensus 129 ~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~~~~~~~~~~~~~ 185 (394)
T 1fuu_A 129 FVEDAEGL----------------------RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQ 185 (394)
T ss_dssp HHHHHHHH----------------------HHCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred hHHHHhhc----------------------CCCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHHhhCCCcHHHHHH
Confidence 65553332 2468999999999988876 346678899999999999988877777777
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 339 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (520)
++..+.. ..+++++|||++..........+..|..+......
T Consensus 186 ~~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (394)
T 1fuu_A 186 IFTLLPP--------------------------------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 227 (394)
T ss_dssp HHHHSCT--------------------------------------TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--
T ss_pred HHHhCCC--------------------------------------CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcc
Confidence 7766432 34789999999877666666677777666554433
Q ss_pred ccCccccchhhhhcc-CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHH
Q 010028 340 YKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 418 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~-~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~ 418 (520)
... ..+.+...... ...+...+..++.....+++||||+++++++.+++.|+..+ ..+..+||+++..+|.++++
T Consensus 228 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~ 303 (394)
T 1fuu_A 228 LTL-EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMK 303 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC-CCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC---CeEEEeeCCCCHHHHHHHHH
Confidence 222 22333322222 33366677777777778899999999999999999998765 78999999999999999999
Q ss_pred HHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCC
Q 010028 419 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 498 (520)
Q Consensus 419 ~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 498 (520)
.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++|+.+.+...++++.+.+...-
T Consensus 304 ~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~- 382 (394)
T 1fuu_A 304 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI- 382 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988877655432
Q ss_pred CcccCCchhh
Q 010028 499 PIHSIPSSLI 508 (520)
Q Consensus 499 ~~~~~~~~~~ 508 (520)
++++....
T Consensus 383 --~~~~~~~~ 390 (394)
T 1fuu_A 383 --EELPSDIA 390 (394)
T ss_dssp ----------
T ss_pred --cccCcchh
Confidence 44554443
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.3e-48 Score=412.56 Aligned_cols=372 Identities=28% Similarity=0.404 Sum_probs=289.3
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc---cccccEEEEcCCH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~---~~~~~vlil~Pt~ 111 (520)
|++++.+++..+||..|+++|.++++.++.. .++++++.||||+|||++|++|+++.+.... ..+.++||++||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 8999999999999999999999999998841 3789999999999999999999999887653 2346899999999
Q ss_pred HHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcc
Q 010028 112 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191 (520)
Q Consensus 112 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 191 (520)
+|+.|++++++++ ...........+...+|+.....+...+.
T Consensus 106 ~La~Q~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--- 147 (579)
T 3sqw_A 106 DLALQIEAEVKKI-----------------------------------HDMNYGLKKYACVSLVGGTDFRAAMNKMN--- 147 (579)
T ss_dssp HHHHHHHHHHHHH-----------------------------------HHHCGGGTTSCEEEECTTSCHHHHHHHHH---
T ss_pred HHHHHHHHHHHHH-----------------------------------HhhcccccceEEEEEECCccHHHHHHHHh---
Confidence 9999976664332 11111223466777788877665544332
Q ss_pred cccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccc
Q 010028 192 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 271 (520)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~ 271 (520)
..+++|+|+||+++.+.+.......+..+++||+||||++.+.++...+..++..+.....
T Consensus 148 -----------------~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~-- 208 (579)
T 3sqw_A 148 -----------------KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-- 208 (579)
T ss_dssp -----------------HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS--
T ss_pred -----------------cCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc--
Confidence 2467999999999999887643456788999999999999988888888888877654211
Q ss_pred cccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccc---cccCccccch
Q 010028 272 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLES 348 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~ 348 (520)
...+..+++++|||++..+..+....+..+........ .......+.+
T Consensus 209 -----------------------------~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 259 (579)
T 3sqw_A 209 -----------------------------KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQ 259 (579)
T ss_dssp -----------------------------SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEE
T ss_pred -----------------------------ccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccce
Confidence 11134579999999998888888877777655433221 1112222222
Q ss_pred hhhhccCC-CcH----HHHHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHc
Q 010028 349 YKLICESK-LKP----LYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422 (520)
Q Consensus 349 ~~~~~~~~-~k~----~~l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 422 (520)
........ .+. ..+...+.. ..+.++||||+++..++.+++.|+.....+..+..+||+|+..+|.++++.|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~ 339 (579)
T 3sqw_A 260 SVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK 339 (579)
T ss_dssp EEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc
Confidence 22222221 111 222333333 467799999999999999999998763345889999999999999999999999
Q ss_pred CCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhc
Q 010028 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 494 (520)
Q Consensus 423 g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~ 494 (520)
|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+.+.+...++.+.+...
T Consensus 340 g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 340 DESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp CSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred CCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999877654
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.4e-48 Score=410.56 Aligned_cols=372 Identities=28% Similarity=0.404 Sum_probs=288.3
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc---ccccEEEEcCCH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTR 111 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~---~~~~vlil~Pt~ 111 (520)
|++.+.+++..+||..|+++|.++++.++.. .+++++++||||+|||++|++|+++.+..... .+.++||++||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 8999999999999999999999999998841 27899999999999999999999998876532 245899999999
Q ss_pred HHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcc
Q 010028 112 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191 (520)
Q Consensus 112 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 191 (520)
+|+.|+++.++++ ...........+...+|+.....+...+
T Consensus 157 ~La~Q~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 197 (563)
T 3i5x_A 157 DLALQIEAEVKKI-----------------------------------HDMNYGLKKYACVSLVGGTDFRAAMNKM---- 197 (563)
T ss_dssp HHHHHHHHHHHHH-----------------------------------HHHCGGGTTSCEEEECTTSCHHHHHHHH----
T ss_pred HHHHHHHHHHHHH-----------------------------------HhhccccCceeEEEEECCcCHHHHHHHH----
Confidence 9999976664432 1111122245677778887665554432
Q ss_pred cccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccc
Q 010028 192 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 271 (520)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~ 271 (520)
...+++|+|+||+++.+.+.+.....+..+++||+||||++.+.++...+..++..+.....
T Consensus 198 ----------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~-- 259 (563)
T 3i5x_A 198 ----------------NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-- 259 (563)
T ss_dssp ----------------HHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS--
T ss_pred ----------------hcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc--
Confidence 22467999999999998887643445788999999999999988888888888777654211
Q ss_pred cccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccc---ccCccccch
Q 010028 272 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLES 348 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~ 348 (520)
...+..|++++|||++..+..+....+..+......... ......+.+
T Consensus 260 -----------------------------~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (563)
T 3i5x_A 260 -----------------------------KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQ 310 (563)
T ss_dssp -----------------------------SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEE
T ss_pred -----------------------------cCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCce
Confidence 112356899999999887788887777776554332211 112222222
Q ss_pred hhhhccCC-CcH----HHHHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHc
Q 010028 349 YKLICESK-LKP----LYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422 (520)
Q Consensus 349 ~~~~~~~~-~k~----~~l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 422 (520)
........ .+. ..+...+.. ..++++||||+++..++.+++.|+.....+..+..+||+|+..+|.++++.|++
T Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 390 (563)
T 3i5x_A 311 SVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK 390 (563)
T ss_dssp EEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Confidence 22222221 111 222222333 467799999999999999999998763345889999999999999999999999
Q ss_pred CCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhc
Q 010028 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 494 (520)
Q Consensus 423 g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~ 494 (520)
|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.+++|+.+.+...++.+.+...
T Consensus 391 g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 391 DESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp CSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred CCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999977654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=413.86 Aligned_cols=362 Identities=23% Similarity=0.372 Sum_probs=158.4
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
...+|++++ |++.+.+.+..+||..|+++|.++++.++.. .+++++++||||||||++|++|+++.+... .
T Consensus 90 ~~~~f~~~~------l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-~ 160 (479)
T 3fmp_B 90 SVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-N 160 (479)
T ss_dssp CCCCSGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTT-S
T ss_pred CcCCHHHcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhc-C
Confidence 355677777 9999999999999999999999999998762 248999999999999999999999877654 3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc-ccceEEeccCcc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQS 178 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~~ 178 (520)
.++++||++|+++|+.|+++. +..+... .++.+....++.
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~ 201 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKV---------------------------------------IEQMGKFYPELKLAYAVRGN 201 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHH---------------------------------------HHHHHTTSTTCCEEEESTTC
T ss_pred CCCcEEEEeChHHHHHHHHHH---------------------------------------HHHHHhhCCCceEEEEeCCc
Confidence 456899999999999995554 3333322 245566666654
Q ss_pred chHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhhhH
Q 010028 179 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWL 257 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~~l 257 (520)
..... ....++|+|+||+.+.+++.+.+.+.+.++++||+||||++.+ ..+...+
T Consensus 202 ~~~~~------------------------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~ 257 (479)
T 3fmp_B 202 KLERG------------------------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQS 257 (479)
T ss_dssp CCCTT------------------------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHH
T ss_pred ccccc------------------------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHH
Confidence 32211 1235689999999999999876677889999999999999876 4555555
Q ss_pred HHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccc
Q 010028 258 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 337 (520)
Q Consensus 258 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~ 337 (520)
..+...+. ...+++++|||++.....+....+.++..+....
T Consensus 258 ~~i~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 299 (479)
T 3fmp_B 258 IRIQRMLP--------------------------------------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (479)
T ss_dssp HHHHTTSC--------------------------------------TTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-
T ss_pred HHHHhhCC--------------------------------------ccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc
Confidence 55544332 2457999999998877778888888887776655
Q ss_pred ccccCccccchhhhhc-cCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHH
Q 010028 338 TRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 416 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~-~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~ 416 (520)
..... ..+.+....+ ....+...+..++.....+++||||+++..++.++..|...+ ..+..+||+++..+|..+
T Consensus 300 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~---~~v~~lh~~~~~~~R~~~ 375 (479)
T 3fmp_B 300 EEETL-DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAV 375 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCc-CCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC---ccEEEecCCCCHHHHHHH
Confidence 43322 3333333333 335666777777777778899999999999999999998765 789999999999999999
Q ss_pred HHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCC------CHHHHHHHHhhcccCCCCCcEEEEEecch-HHHHHHH
Q 010028 417 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKL 489 (520)
Q Consensus 417 ~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~-~~~~~~~ 489 (520)
++.|++|+.+|||||+++++|+|+|++++||++++|. +...|+||+||+||.|+.|.+++|++..+ ...++.+
T Consensus 376 ~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i 455 (479)
T 3fmp_B 376 IERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRI 455 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHH
Confidence 9999999999999999999999999999999999994 56799999999999999999999998765 6666666
Q ss_pred HHHhcC
Q 010028 490 LQKADN 495 (520)
Q Consensus 490 ~~~~~~ 495 (520)
.+.+..
T Consensus 456 ~~~~~~ 461 (479)
T 3fmp_B 456 QEHFNK 461 (479)
T ss_dssp ------
T ss_pred HHHhCC
Confidence 655543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.8e-46 Score=371.42 Aligned_cols=335 Identities=27% Similarity=0.428 Sum_probs=267.0
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
|++.+.+++..+||..|+++|.++++.+.. ++++++.+|||+|||+++++++++. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHH
Confidence 578999999999999999999999998876 8899999999999999999988762 45799999999999
Q ss_pred HhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccc
Q 010028 115 LQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 194 (520)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 194 (520)
.| +.+.+..+....+..+...+|+.....+...+
T Consensus 70 ~q---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 103 (337)
T 2z0m_A 70 RQ---------------------------------------VASHIRDIGRYMDTKVAEVYGGMPYKAQINRV------- 103 (337)
T ss_dssp HH---------------------------------------HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH-------
T ss_pred HH---------------------------------------HHHHHHHHhhhcCCcEEEEECCcchHHHHhhc-------
Confidence 99 45555555556678888888887765553322
Q ss_pred ccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccc
Q 010028 195 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274 (520)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~ 274 (520)
..++|+|+||+.+.+.+.. ....+.+++++|+||||++.+.++...+..++.....
T Consensus 104 ---------------~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~-------- 159 (337)
T 2z0m_A 104 ---------------RNADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN-------- 159 (337)
T ss_dssp ---------------TTCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------
T ss_pred ---------------CCCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCc--------
Confidence 3479999999999988876 4456788999999999999888877777777765432
Q ss_pred ccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhcc
Q 010028 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 354 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
..+++++|||++..........+.++..+..... ...+.+......
T Consensus 160 ------------------------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 205 (337)
T 2z0m_A 160 ------------------------------RKITGLFSATIPEEIRKVVKDFITNYEEIEACIG----LANVEHKFVHVK 205 (337)
T ss_dssp ------------------------------CSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGG----GGGEEEEEEECS
T ss_pred ------------------------------ccEEEEEeCcCCHHHHHHHHHhcCCceeeecccc----cCCceEEEEEeC
Confidence 2357889999987766666666665554432211 112222222222
Q ss_pred CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc
Q 010028 355 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 434 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (520)
.. .......+....++++||||+++++++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++
T Consensus 206 ~~--~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 276 (337)
T 2z0m_A 206 DD--WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD-------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVA 276 (337)
T ss_dssp SS--SHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHH
T ss_pred hH--HHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCcc
Confidence 22 2233455666788899999999999999998876 36789999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhc
Q 010028 435 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 494 (520)
Q Consensus 435 ~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~ 494 (520)
++|+|+|++++||+++.|.|...|+||+||+||.|+.|.+++|+. .+...++++.+.++
T Consensus 277 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 277 SRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999 88888888766554
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1e-45 Score=386.66 Aligned_cols=348 Identities=21% Similarity=0.294 Sum_probs=266.7
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~ 100 (520)
..|++++ |++.+.+.+.+ +||..|+++|.++|+.++. ++++++.+|||+|||++|++|++. .
T Consensus 2 ~~fe~l~------L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~-------~ 64 (523)
T 1oyw_A 2 AQAEVLN------LESGAKQVLQETFGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL-------L 64 (523)
T ss_dssp CCCCCSS------HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH-------S
T ss_pred CChhhCC------CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHH-------h
Confidence 4678887 89999999998 8999999999999999886 899999999999999999999874 2
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
...+||++|+++|+.|+++.++++ ++.+..++++.+.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~-------------------------------------------gi~~~~l~~~~~~ 101 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN-------------------------------------------GVAAACLNSTQTR 101 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-------------------------------------------TCCEEEECTTSCH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc-------------------------------------------CCcEEEEeCCCCH
Confidence 347999999999999965553322 5677777777665
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH--hhhhHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLP 258 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~--~~~~l~ 258 (520)
......+. ......++|+++||+++...... ..+...++++|||||||++.+++ +.....
T Consensus 102 ~~~~~~~~-----------------~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~ 163 (523)
T 1oyw_A 102 EQQLEVMT-----------------GCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYA 163 (523)
T ss_dssp HHHHHHHH-----------------HHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHHH
T ss_pred HHHHHHHH-----------------HHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHHH
Confidence 44432211 12234689999999998432111 11234678899999999986543 211111
Q ss_pred HHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchh-h-hhcccCCceeeecc
Q 010028 259 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-L-AQLDLHHPLFLTTG 336 (520)
Q Consensus 259 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~-~-~~~~l~~~~~~~~~ 336 (520)
.+...... .+..+++++|||++..... + ....+.++.+....
T Consensus 164 ~l~~l~~~------------------------------------~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 207 (523)
T 1oyw_A 164 ALGQLRQR------------------------------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS 207 (523)
T ss_dssp GGGGHHHH------------------------------------CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC
T ss_pred HHHHHHHh------------------------------------CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC
Confidence 11111000 1245789999999765433 2 22344556554433
Q ss_pred cccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHH
Q 010028 337 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 416 (520)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~ 416 (520)
.....+ .........+...+...+....++++||||++++.++.+++.|+..+ +.+..+||+++..+|.++
T Consensus 208 ~~r~~l------~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~ 278 (523)
T 1oyw_A 208 FDRPNI------RYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKG---ISAAAYHAGLENNVRADV 278 (523)
T ss_dssp CCCTTE------EEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHH
T ss_pred CCCCce------EEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHH
Confidence 332211 12223345667778888888888899999999999999999999875 789999999999999999
Q ss_pred HHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHH
Q 010028 417 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 492 (520)
Q Consensus 417 ~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~ 492 (520)
++.|++|+.+|||||+++++|+|+|++++||+++.|.|...|.||+||+||.|+.|.+++|+...|...++.+++.
T Consensus 279 ~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 279 QEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888764
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-46 Score=393.92 Aligned_cols=352 Identities=22% Similarity=0.316 Sum_probs=237.4
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
+++.+.+.+...|+..|+++|.+|++.++.. .++++++.+|||+|||++|++++++.+... ..+.++||++|+++|+
T Consensus 126 l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~-~~~~~vLvl~P~~~L~ 202 (508)
T 3fho_A 126 XXXXXXXXXXXXXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDAS-VPKPQAICLAPSRELA 202 (508)
T ss_dssp -------------CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTT-CCSCCEEEECSCHHHH
T ss_pred cccccccccccccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhC-CCCceEEEEECcHHHH
Confidence 7788889998899999999999999998872 248999999999999999999999887654 3466899999999999
Q ss_pred HhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccc
Q 010028 115 LQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 194 (520)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 194 (520)
.|+++ .+..+....++.+....++....
T Consensus 203 ~Q~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~------------- 230 (508)
T 3fho_A 203 RQIMD---------------------------------------VVTEMGKYTEVKTAFGIKDSVPK------------- 230 (508)
T ss_dssp HHHHH---------------------------------------HHHHHSTTSSCCEEC---------------------
T ss_pred HHHHH---------------------------------------HHHHhCCccCeeEEEEeCCcccc-------------
Confidence 99544 44444444455555544443211
Q ss_pred ccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhhhHHHHHHhhccCcccccc
Q 010028 195 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFS 273 (520)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~~l~~i~~~~~~~~~~~~~ 273 (520)
.....++|+|+||+.+.+.+.. ....+..+++||+||||++.+ ..+...+..+......
T Consensus 231 ------------~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~------- 290 (508)
T 3fho_A 231 ------------GAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR------- 290 (508)
T ss_dssp --------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT-------
T ss_pred ------------cccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc-------
Confidence 1123679999999999998876 446688899999999999876 4555666666655432
Q ss_pred cccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhc
Q 010028 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
..+++++|||++.....+......++..+...............+....
T Consensus 291 -------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 339 (508)
T 3fho_A 291 -------------------------------NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQ 339 (508)
T ss_dssp -------------------------------TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC-
T ss_pred -------------------------------CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECC
Confidence 3478999999987777777777777766554443322222111222222
Q ss_pred cCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc
Q 010028 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433 (520)
Q Consensus 354 ~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (520)
....+...+..++....++++||||+++++++.+++.|...+ ..+..+||+++..+|.++++.|++|+.+|||+|++
T Consensus 340 ~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~ 416 (508)
T 3fho_A 340 SEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNV 416 (508)
T ss_dssp -CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTT---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-
T ss_pred chHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCCh
Confidence 334566677777777788999999999999999999998755 78999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEccCC------CCHHHHHHHHhhcccCCCCCcEEEEEec-chHHHHHHHHHHhcC
Q 010028 434 MTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVKRFKKLLQKADN 495 (520)
Q Consensus 434 ~~~Gidl~~~~~VI~~~~p------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~-~~~~~~~~~~~~~~~ 495 (520)
+++|+|+|++++||+++.| .|...|+||+||+||.|+.|.+++|+.. .+...++.+.+.+..
T Consensus 417 l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 417 IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp ----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 9999999999999999999 7899999999999999999999999985 566667777665543
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.7e-45 Score=384.67 Aligned_cols=339 Identities=19% Similarity=0.268 Sum_probs=256.3
Q ss_pred CCHHHHHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
+++.+...|.+ +||..|+|+|.++|+.++. ++++++.+|||+|||++|++|++. ..+++||++|+++|
T Consensus 28 l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVisP~~~L 96 (591)
T 2v1x_A 28 WSGKVKDILQNVFKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVICPLISL 96 (591)
T ss_dssp THHHHHHHHHHTSCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEECSCHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEEeCHHHH
Confidence 88999999998 7999999999999999887 899999999999999999999975 24589999999999
Q ss_pred HHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccc
Q 010028 114 ALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193 (520)
Q Consensus 114 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 193 (520)
+.|+++.+ ..+ ++.+..++|+.+.......+..
T Consensus 97 ~~q~~~~l---------------------------------------~~~----gi~~~~l~~~~~~~~~~~~~~~---- 129 (591)
T 2v1x_A 97 MEDQLMVL---------------------------------------KQL----GISATMLNASSSKEHVKWVHAE---- 129 (591)
T ss_dssp HHHHHHHH---------------------------------------HHH----TCCEEECCSSCCHHHHHHHHHH----
T ss_pred HHHHHHHH---------------------------------------Hhc----CCcEEEEeCCCCHHHHHHHHHH----
Confidence 99965543 332 6778888888776544322111
Q ss_pred cccccCCchhHHHhhccCCcEEEeCchHHH------HHHhcCCCcccccccEEEeehHHHHHHHH--hhhhHHH---HHH
Q 010028 194 EAGICYDPEDVLQELQSAVDILVATPGRLM------DHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPT---VLQ 262 (520)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~------~~l~~~~~~~~~~~~~lViDEah~l~~~~--~~~~l~~---i~~ 262 (520)
.......++|+|+||+++. +.+.. ...+..++++||||||++.+++ |...... +..
T Consensus 130 -----------l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~ 196 (591)
T 2v1x_A 130 -----------MVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKR 196 (591)
T ss_dssp -----------HHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHH
T ss_pred -----------hhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCcEEEEECcccccccccccHHHHHHHHHHHH
Confidence 0012356899999999874 22222 2346788999999999986543 2222211 111
Q ss_pred hhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhccc--CCceeeecccccc
Q 010028 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRY 340 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l--~~~~~~~~~~~~~ 340 (520)
. .+..+++++|||++..........+ ..+..+.......
T Consensus 197 ~---------------------------------------~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~ 237 (591)
T 2v1x_A 197 Q---------------------------------------FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP 237 (591)
T ss_dssp H---------------------------------------CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT
T ss_pred h---------------------------------------CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc
Confidence 1 1345789999999865544333333 3333333322221
Q ss_pred cCccccchhhhhccCC---CcHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHH
Q 010028 341 KLPERLESYKLICESK---LKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 416 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~---~k~~~l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~ 416 (520)
.+. +....... .+...+..++.. ..++++||||++++.++.++..|+..+ +.+..+||+|+..+|.++
T Consensus 238 nl~-----~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~~~ 309 (591)
T 2v1x_A 238 NLY-----YEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG---IHAGAYHANLEPEDKTTV 309 (591)
T ss_dssp TEE-----EEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHH
T ss_pred ccE-----EEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHH
Confidence 111 11111111 233455555543 367899999999999999999999865 889999999999999999
Q ss_pred HHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHH
Q 010028 417 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 491 (520)
Q Consensus 417 ~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~ 491 (520)
++.|++|+.+|||||+++++|||+|++++||++++|.|...|+|++||+||.|+.|.|++|+...|...++.++.
T Consensus 310 ~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 310 HRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp HHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTT
T ss_pred HHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999888877764
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.9e-43 Score=357.64 Aligned_cols=355 Identities=17% Similarity=0.238 Sum_probs=250.7
Q ss_pred HHHHHHHH-CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 38 ~~~~~l~~-~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
++.+.+.+ +++ .|+++|.++++.++. ++++++++|||+|||++++++++..+. .++++||++|+++|+.|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQ 79 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHH
Confidence 45556655 566 899999999998876 889999999999999999888877552 45689999999999999
Q ss_pred HHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccccc
Q 010028 117 VNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 196 (520)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~ 196 (520)
+...+..++. .++++..++|+.+...+...+
T Consensus 80 ---------------------------------------~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~--------- 110 (414)
T 3oiy_A 80 ---------------------------------------TLERLQKLAD-EKVKIFGFYSSMKKEEKEKFE--------- 110 (414)
T ss_dssp ---------------------------------------HHHHHHHHCC-SSCCEEECCTTSCHHHHHHHH---------
T ss_pred ---------------------------------------HHHHHHHHcc-CCceEEEEECCCChhhHHHHH---------
Confidence 4445555555 688999999998874432221
Q ss_pred ccCCchhHHHhhcc-CCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-----------HHhhhh-HHHHHHh
Q 010028 197 ICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-----------EAYQAW-LPTVLQL 263 (520)
Q Consensus 197 ~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-----------~~~~~~-l~~i~~~ 263 (520)
..+.. .++|+|+||+.+.+.+.. ..+.++++||+||||++.. .++... +..++..
T Consensus 111 ---------~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~ 178 (414)
T 3oiy_A 111 ---------KSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFST 178 (414)
T ss_dssp ---------HHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ---------HHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHh
Confidence 12223 489999999999887764 5567899999999998764 233333 5555555
Q ss_pred hccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeeccc-ccCCchh-hhhcccCCceeeeccccccc
Q 010028 264 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT-LTQDPNK-LAQLDLHHPLFLTTGETRYK 341 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT-~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 341 (520)
++.... ...-...+..+++++||| .+..... +....+. +.... ...
T Consensus 179 ~~~~~~---------------------------~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~-~~~ 226 (414)
T 3oiy_A 179 IKQGKI---------------------------YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-LVS 226 (414)
T ss_dssp HHHTCC---------------------------CCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-CCC
T ss_pred cccchh---------------------------hhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-ccc
Confidence 431100 000000135689999999 4433332 2221111 11111 111
Q ss_pred CccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEE-EeccccCHHHHHHHHHHH
Q 010028 342 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAF 420 (520)
Q Consensus 342 ~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~-~~~~~~~~~~r~~~~~~f 420 (520)
....+.+.... ..+.+.+..++... ++++||||++++.++.+++.|+..+ +.+. .+||. +|+ ++.|
T Consensus 227 ~~~~i~~~~~~---~~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 227 VARNITHVRIS---SRSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFK---FNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp CCCSEEEEEES---SCCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTT---CCEEESSSCH----HHH--HHHH
T ss_pred ccccchheeec---cCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcC---CceehhhcCc----chH--HHHH
Confidence 22233333222 25667777777774 5899999999999999999999865 7787 88885 344 9999
Q ss_pred HcCCceEEEE----ecccccCCCCCC-CcEEEEccCC--CCHHHHHHHHhhcccCC----CCCcEEEEEecchHHHHHHH
Q 010028 421 REGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKP--AYIKTYIHRAGRTARAG----QLGRCFTLLHKDEVKRFKKL 489 (520)
Q Consensus 421 ~~g~~~vLv~----T~~~~~Gidl~~-~~~VI~~~~p--~s~~~~~Q~~GR~~R~~----~~g~~i~~~~~~~~~~~~~~ 489 (520)
++|+.+|||| |+++++|+|+|+ +++||+++.| .+...|+||+||+||.| +.|.+++|+ .+...++.+
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l 371 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESL 371 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHH
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHH
Confidence 9999999999 999999999999 9999999999 99999999999999988 478898888 556666666
Q ss_pred HHHhcC-CCCCcccCCchhhh
Q 010028 490 LQKADN-DSCPIHSIPSSLIE 509 (520)
Q Consensus 490 ~~~~~~-~~~~~~~~~~~~~~ 509 (520)
.+.+.. ...+..++++..++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~ 392 (414)
T 3oiy_A 372 KTRLLLIAEEEIIEEAEANWK 392 (414)
T ss_dssp HHHHHHHHCCCEEEGGGCCHH
T ss_pred HHHhcccccccccccccccHH
Confidence 555440 23444445444443
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6e-41 Score=365.45 Aligned_cols=342 Identities=20% Similarity=0.260 Sum_probs=254.9
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccc
Q 010028 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (520)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~ 102 (520)
.|++++ |++.+.+.+..+||..|+++|.++++.++. ++++++++||||||||+++.+++++.+... +.
T Consensus 2 ~f~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~---~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~ 69 (720)
T 2zj8_A 2 RVDELR------VDERIKSTLKERGIESFYPPQAEALKSGIL---EGKNALISIPTASGKTLIAEIAMVHRILTQ---GG 69 (720)
T ss_dssp BGGGCC------SCHHHHHHHHHTTCCBCCHHHHHHHTTTGG---GTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CS
T ss_pred cHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc---CCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CC
Confidence 477777 999999999999999999999999887332 489999999999999999999999887643 46
Q ss_pred cEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHH
Q 010028 103 RALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIAD 182 (520)
Q Consensus 103 ~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 182 (520)
+++|++|+++|+.|+++++++ +. ..++++...+|+.....
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~---------------------------------------l~-~~g~~v~~~~G~~~~~~ 109 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQD---------------------------------------WE-KIGLRVAMATGDYDSKD 109 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGG---------------------------------------GG-GGTCCEEEECSCSSCCC
T ss_pred EEEEEcCcHHHHHHHHHHHHH---------------------------------------HH-hcCCEEEEecCCCCccc
Confidence 899999999999996655422 22 13678888888754322
Q ss_pred HHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHH
Q 010028 183 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 262 (520)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~ 262 (520)
. ....++|+|+||+++...+.. ....++++++||+||+|.+.+..++..+..++.
T Consensus 110 ~------------------------~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (720)
T 2zj8_A 110 E------------------------WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGSRDRGATLEVILA 164 (720)
T ss_dssp G------------------------GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred c------------------------ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCCCcccHHHHHHHH
Confidence 2 113579999999999888876 334578999999999999877677777888887
Q ss_pred hhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccC
Q 010028 263 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 342 (520)
.++. ..++|++|||++. ...+...... +. +.........
T Consensus 165 ~l~~--------------------------------------~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~~~rp~~l 203 (720)
T 2zj8_A 165 HMLG--------------------------------------KAQIIGLSATIGN-PEELAEWLNA-EL-IVSDWRPVKL 203 (720)
T ss_dssp HHBT--------------------------------------TBEEEEEECCCSC-HHHHHHHTTE-EE-EECCCCSSEE
T ss_pred Hhhc--------------------------------------CCeEEEEcCCcCC-HHHHHHHhCC-cc-cCCCCCCCcc
Confidence 7642 2478999999964 4444433221 11 1111000000
Q ss_pred cccc--chhhhhc-----cCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCC------------------
Q 010028 343 PERL--ESYKLIC-----ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------ 397 (520)
Q Consensus 343 ~~~~--~~~~~~~-----~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~------------------ 397 (520)
...+ ....... ........+...+. .++++||||++++.++.++..|......
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~ 281 (720)
T 2zj8_A 204 RRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLE 281 (720)
T ss_dssp EEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSC
T ss_pred eEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHh
Confidence 0000 0000000 02333444544443 4689999999999999999998753110
Q ss_pred ------------ceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE----cc----CCCCHHH
Q 010028 398 ------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD----KPAYIKT 457 (520)
Q Consensus 398 ------------~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~----~~----~p~s~~~ 457 (520)
...+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+ .|.|..+
T Consensus 282 ~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~ 361 (720)
T 2zj8_A 282 ENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIE 361 (720)
T ss_dssp SCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHH
T ss_pred cccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHH
Confidence 124899999999999999999999999999999999999999999999998 65 5889999
Q ss_pred HHHHHhhcccCC--CCCcEEEEEecchHH
Q 010028 458 YIHRAGRTARAG--QLGRCFTLLHKDEVK 484 (520)
Q Consensus 458 ~~Q~~GR~~R~~--~~g~~i~~~~~~~~~ 484 (520)
|.||+||+||.| ..|.|++++.+.+..
T Consensus 362 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 362 VHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp HHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred HHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 999999999988 468899999888743
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-40 Score=361.83 Aligned_cols=340 Identities=21% Similarity=0.269 Sum_probs=248.6
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~ 101 (520)
..|++++ |++.+.+.+..+||..|+++|.++++.++. ++++++++||||||||+++.+++++.+... +
T Consensus 8 ~~~~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~---~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~ 75 (715)
T 2va8_A 8 MPIEDLK------LPSNVIEIIKKRGIKKLNPPQTEAVKKGLL---EGNRLLLTSPTGSGKTLIAEMGIISFLLKN---G 75 (715)
T ss_dssp CBGGGSS------SCHHHHHHHHTTSCCBCCHHHHHHHHTTTT---TTCCEEEECCTTSCHHHHHHHHHHHHHHHS---C
T ss_pred CcHHHcC------CCHHHHHHHHhCCCCCCCHHHHHHHHHHhc---CCCcEEEEcCCCCcHHHHHHHHHHHHHHHC---C
Confidence 4588888 999999999999999999999999987433 489999999999999999999999877643 4
Q ss_pred ccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchH
Q 010028 102 LRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIA 181 (520)
Q Consensus 102 ~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~ 181 (520)
.+++|++|+++|+.|++++ +..+. ..++++...+|+....
T Consensus 76 ~~il~i~P~r~La~q~~~~---------------------------------------~~~~~-~~g~~v~~~~G~~~~~ 115 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLT---------------------------------------FKDWE-LIGFKVAMTSGDYDTD 115 (715)
T ss_dssp SEEEEECSCHHHHHHHHHH---------------------------------------HGGGG-GGTCCEEECCSCSSSC
T ss_pred CeEEEEeCcHHHHHHHHHH---------------------------------------HHHhh-cCCCEEEEEeCCCCCc
Confidence 6899999999999996544 32222 2367888888876533
Q ss_pred HHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHH
Q 010028 182 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261 (520)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~ 261 (520)
.. ....++|+|+||+++...+.. ....++++++||+||+|.+.+..++..++.++
T Consensus 116 ~~------------------------~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~ 170 (715)
T 2va8_A 116 DA------------------------WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHYLNDPERGPVVESVT 170 (715)
T ss_dssp CG------------------------GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHH
T ss_pred hh------------------------hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhhcCCcccchHHHHHH
Confidence 22 113579999999999988876 33457899999999999987666777777777
Q ss_pred HhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccccccc
Q 010028 262 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 341 (520)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~ 341 (520)
..++ ..++|++|||++. ...+..... .+.+ ........
T Consensus 171 ~~~~---------------------------------------~~~ii~lSATl~n-~~~~~~~l~-~~~~-~~~~r~~~ 208 (715)
T 2va8_A 171 IRAK---------------------------------------RRNLLALSATISN-YKQIAKWLG-AEPV-ATNWRPVP 208 (715)
T ss_dssp HHHH---------------------------------------TSEEEEEESCCTT-HHHHHHHHT-CEEE-ECCCCSSC
T ss_pred Hhcc---------------------------------------cCcEEEEcCCCCC-HHHHHHHhC-CCcc-CCCCCCCC
Confidence 6653 2368999999963 444443322 1111 11100000
Q ss_pred Ccccc----------chhhh------hccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCC--------
Q 010028 342 LPERL----------ESYKL------ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL-------- 397 (520)
Q Consensus 342 ~~~~~----------~~~~~------~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~-------- 397 (520)
+...+ ...+. ..........+...+. .++++||||+++++++.+++.|......
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~ 286 (715)
T 2va8_A 209 LIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENAL 286 (715)
T ss_dssp EEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHH
T ss_pred ceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHH
Confidence 00000 00000 0001222233333332 5689999999999999999999864211
Q ss_pred -------------------------ceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE----
Q 010028 398 -------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN---- 448 (520)
Q Consensus 398 -------------------------~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~---- 448 (520)
...+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 287 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~ 366 (715)
T 2va8_A 287 SEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYR 366 (715)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--
T ss_pred HHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCee
Confidence 125889999999999999999999999999999999999999999999998
Q ss_pred cc-------CCCCHHHHHHHHhhcccCCC--CCcEEEEEecch
Q 010028 449 YD-------KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDE 482 (520)
Q Consensus 449 ~~-------~p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~~ 482 (520)
|+ .|.|..+|.||+||+||.|. .|.|++++.+.+
T Consensus 367 ~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 367 FNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp ------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred ccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 88 79999999999999999884 688999988766
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6.5e-40 Score=348.03 Aligned_cols=336 Identities=18% Similarity=0.209 Sum_probs=191.1
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc-ccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~-~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
+...|+++|.++++.++. ++++++.+|||+|||++|++|+++.+..... .+.++||++|+++|+.|+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~-------- 71 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQ-------- 71 (556)
T ss_dssp ----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHH--------
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHH--------
Confidence 345899999999999876 7899999999999999999999988776421 267899999999999994
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
...+..+....++++..++|+.....+...
T Consensus 72 -------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------- 101 (556)
T 4a2p_A 72 -------------------------------KNVFKHHFERQGYSVQGISGENFSNVSVEK------------------- 101 (556)
T ss_dssp -------------------------------HHHHHHHHGGGTCCEEECCCC-----CHHH-------------------
T ss_pred -------------------------------HHHHHHHhcccCceEEEEeCCCCcchhHHH-------------------
Confidence 445555555557889999998765443322
Q ss_pred HhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhh-HHHHHHhhccCccccccccccccccccc
Q 010028 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFG 284 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 284 (520)
...+++|+|+||+.+.+.+.......+..+++||+||||++.+.+.... +..++......
T Consensus 102 --~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~----------------- 162 (556)
T 4a2p_A 102 --VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS----------------- 162 (556)
T ss_dssp --HHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-----------------
T ss_pred --hhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc-----------------
Confidence 2235799999999999998874433688999999999999865443222 21222111000
Q ss_pred chhhhcccccccCCCCCCccchheeeecccccCCch-hhh----------h------------------cccCCceeeec
Q 010028 285 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-KLA----------Q------------------LDLHHPLFLTT 335 (520)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-~~~----------~------------------~~l~~~~~~~~ 335 (520)
..+..+++++|||+..... .+. . .+...|.....
T Consensus 163 -----------------~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (556)
T 4a2p_A 163 -----------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 225 (556)
T ss_dssp --------------------CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEE
T ss_pred -----------------cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEE
Confidence 0134578999999853210 000 0 00011111000
Q ss_pred ccccccCccc-----------------------------------------cc---------------------------
Q 010028 336 GETRYKLPER-----------------------------------------LE--------------------------- 347 (520)
Q Consensus 336 ~~~~~~~~~~-----------------------------------------~~--------------------------- 347 (520)
.... ..+.. +.
T Consensus 226 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (556)
T 4a2p_A 226 LVKR-RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 304 (556)
T ss_dssp ECCC-CSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH
T ss_pred EcCC-CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 0000 00000 00
Q ss_pred ---------------------------hh-------------------------------hhhccCCCcHHHHHHHHHh-
Q 010028 348 ---------------------------SY-------------------------------KLICESKLKPLYLVALLQS- 368 (520)
Q Consensus 348 ---------------------------~~-------------------------------~~~~~~~~k~~~l~~~~~~- 368 (520)
.+ ........|...+..++..
T Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~ 384 (556)
T 4a2p_A 305 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 384 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHH
Confidence 00 0000024466666666654
Q ss_pred ---cCCCcEEEEecCHHHHHHHHHHHhhcCC---------CceeEEEeccccCHHHHHHHHHHHHc-CCceEEEEecccc
Q 010028 369 ---LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMT 435 (520)
Q Consensus 369 ---~~~~k~lIf~~s~~~~~~l~~~L~~~~~---------~~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~ 435 (520)
..+.++||||+++.++..+++.|+..+. .+.....+||+|+..+|.++++.|++ |+.+|||||++++
T Consensus 385 ~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~ 464 (556)
T 4a2p_A 385 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 464 (556)
T ss_dssp HHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---
T ss_pred hcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchh
Confidence 4678999999999999999999987410 13445566788999999999999999 9999999999999
Q ss_pred cCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchH
Q 010028 436 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483 (520)
Q Consensus 436 ~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 483 (520)
+|+|+|++++||+||+|+|+..|+||+|| ||. +.|.+++|+.+.+.
T Consensus 465 ~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 465 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp --------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 99999999999999999999999999999 998 69999999998765
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.3e-40 Score=358.61 Aligned_cols=337 Identities=23% Similarity=0.279 Sum_probs=246.5
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
|++.+.+.+.++||..|+++|.++++.+.. +++++++||||+|||+++.+++++.+.. +.+++|++|+++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHH
Confidence 678899999999999999999999998654 8999999999999999999999987653 45899999999999
Q ss_pred HhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccc
Q 010028 115 LQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 194 (520)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 194 (520)
.|+++++ ..+. ..++++...+|+......
T Consensus 82 ~q~~~~~---------------------------------------~~~~-~~g~~v~~~~G~~~~~~~----------- 110 (702)
T 2p6r_A 82 GEKYESF---------------------------------------KKWE-KIGLRIGISTGDYESRDE----------- 110 (702)
T ss_dssp HHHHHHH---------------------------------------TTTT-TTTCCEEEECSSCBCCSS-----------
T ss_pred HHHHHHH---------------------------------------HHHH-hcCCEEEEEeCCCCcchh-----------
Confidence 9965543 2222 236788888887653221
Q ss_pred ccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccc
Q 010028 195 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274 (520)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~ 274 (520)
....++|+|+||+++...+.+ ....++++++||+||+|.+.+..++..+..++..+....
T Consensus 111 -------------~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~------ 170 (702)
T 2p6r_A 111 -------------HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN------ 170 (702)
T ss_dssp -------------CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC------
T ss_pred -------------hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC------
Confidence 113679999999999988876 334578999999999999877667777777776654210
Q ss_pred ccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccc--hhhhh
Q 010028 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE--SYKLI 352 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 352 (520)
+..++|++|||++. ...+..... .+. +........+...+. .....
T Consensus 171 -----------------------------~~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~~~~~~~~~ 218 (702)
T 2p6r_A 171 -----------------------------KALRVIGLSATAPN-VTEIAEWLD-ADY-YVSDWRPVPLVEGVLCEGTLEL 218 (702)
T ss_dssp -----------------------------TTCEEEEEECCCTT-HHHHHHHTT-CEE-EECCCCSSCEEEEEECSSEEEE
T ss_pred -----------------------------cCceEEEECCCcCC-HHHHHHHhC-CCc-ccCCCCCccceEEEeeCCeeec
Confidence 24579999999963 444444322 221 111111111100000 00000
Q ss_pred ccC-------CCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCC---------------------------Cc
Q 010028 353 CES-------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---------------------------LR 398 (520)
Q Consensus 353 ~~~-------~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~---------------------------~~ 398 (520)
... ......+...+. .++++||||++++.++.+++.|..... ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 296 (702)
T 2p6r_A 219 FDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVR 296 (702)
T ss_dssp EETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHH
T ss_pred cCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHh
Confidence 000 113344444433 578999999999999999999875310 01
Q ss_pred eeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE----cc---CCCCHHHHHHHHhhcccCC--
Q 010028 399 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD---KPAYIKTYIHRAGRTARAG-- 469 (520)
Q Consensus 399 ~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~----~~---~p~s~~~~~Q~~GR~~R~~-- 469 (520)
..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.|..+|.||+||+||.|
T Consensus 297 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 297 KGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred cCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 35788999999999999999999999999999999999999999999998 55 6889999999999999988
Q ss_pred CCCcEEEEEecchHH
Q 010028 470 QLGRCFTLLHKDEVK 484 (520)
Q Consensus 470 ~~g~~i~~~~~~~~~ 484 (520)
..|.|++++.+.+.+
T Consensus 377 ~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 377 ERGEAIIIVGKRDRE 391 (702)
T ss_dssp SCEEEEEECCGGGHH
T ss_pred CCceEEEEecCccHH
Confidence 468899999988743
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-40 Score=366.98 Aligned_cols=338 Identities=18% Similarity=0.187 Sum_probs=240.0
Q ss_pred CHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHH
Q 010028 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (520)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~ 115 (520)
++.+...+...++..|+++|.+|++.+.. +++++++||||+|||++|++|++..+. .+.+++|++|+++|+.
T Consensus 170 ~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~----~g~rvlvl~PtraLa~ 241 (1108)
T 3l9o_A 170 AEHKRVNEARTYPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK----NKQRVIYTSPIKALSN 241 (1108)
T ss_dssp TTTCCCSCSSCCSSCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHH----TTCEEEEEESSHHHHH
T ss_pred ChhhhHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHh----cCCeEEEEcCcHHHHH
Confidence 33333334444455899999999998754 899999999999999999999998774 3458999999999999
Q ss_pred hHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccc
Q 010028 116 QVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 195 (520)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 195 (520)
|+++.+ ..... .++.++|+.+
T Consensus 242 Q~~~~l---------------------------------------~~~~~----~VglltGd~~---------------- 262 (1108)
T 3l9o_A 242 QKYREL---------------------------------------LAEFG----DVGLMTGDIT---------------- 262 (1108)
T ss_dssp HHHHHH---------------------------------------HHHTS----SEEEECSSCB----------------
T ss_pred HHHHHH---------------------------------------HHHhC----CccEEeCccc----------------
Confidence 965543 33222 4666777754
Q ss_pred cccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccc
Q 010028 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 275 (520)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~ 275 (520)
....++|+|+||++|.+.+... ...+.++++|||||||++.+.+++..+..++..++.
T Consensus 263 ------------~~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~--------- 320 (1108)
T 3l9o_A 263 ------------INPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD--------- 320 (1108)
T ss_dssp ------------CCCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT---------
T ss_pred ------------cCCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhhhhhccccchHHHHHHHHHhcCC---------
Confidence 2245799999999999988873 355788999999999999888888888888876543
Q ss_pred cccccccccchhhhcccccccCCCCCCccchheeeecccccCCch--hhhhcccCCceeeeccccc-ccCcccc-----c
Q 010028 276 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN--KLAQLDLHHPLFLTTGETR-YKLPERL-----E 347 (520)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~--~~~~~~l~~~~~~~~~~~~-~~~~~~~-----~ 347 (520)
.++++++|||++.... .+.......+..+...... ..+...+ .
T Consensus 321 -----------------------------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~ 371 (1108)
T 3l9o_A 321 -----------------------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGD 371 (1108)
T ss_dssp -----------------------------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSS
T ss_pred -----------------------------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCc
Confidence 4578999999876533 2222222333222211111 0000000 0
Q ss_pred hhhhhcc-------------------------------------------C---CCcHHHHHHHHHhcCCCcEEEEecCH
Q 010028 348 SYKLICE-------------------------------------------S---KLKPLYLVALLQSLGEEKCIVFTSSV 381 (520)
Q Consensus 348 ~~~~~~~-------------------------------------------~---~~k~~~l~~~~~~~~~~k~lIf~~s~ 381 (520)
....... . ..+...+...+.....+++||||+++
T Consensus 372 ~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr 451 (1108)
T 3l9o_A 372 GIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSK 451 (1108)
T ss_dssp CCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred ceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcH
Confidence 0000000 0 11122233444445677999999999
Q ss_pred HHHHHHHHHHhhcCCC------------------------------------ceeEEEeccccCHHHHHHHHHHHHcCCc
Q 010028 382 ESTHRLCTLLNHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKI 425 (520)
Q Consensus 382 ~~~~~l~~~L~~~~~~------------------------------------~~~v~~~~~~~~~~~r~~~~~~f~~g~~ 425 (520)
..|+.++..|...+.. ...+..+||+|++.+|..+++.|++|.+
T Consensus 452 ~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~i 531 (1108)
T 3l9o_A 452 RDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFL 531 (1108)
T ss_dssp HHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCC
Confidence 9999999998653211 0128899999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCcEEEEccC--------CCCHHHHHHHHhhcccCC--CCCcEEEEEecc-hHHHHHHHHH
Q 010028 426 QVLVSSDAMTRGMDVEGVNNVVNYDK--------PAYIKTYIHRAGRTARAG--QLGRCFTLLHKD-EVKRFKKLLQ 491 (520)
Q Consensus 426 ~vLv~T~~~~~Gidl~~~~~VI~~~~--------p~s~~~~~Q~~GR~~R~~--~~g~~i~~~~~~-~~~~~~~~~~ 491 (520)
+|||||+++++|+|+|++++||+++. |.|..+|+||+||+||.| ..|.|++++.+. +...+++++.
T Consensus 532 kVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 532 KVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp CEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred eEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 99999999999999999999997764 347788999999999999 578888888775 4455666653
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4e-40 Score=358.84 Aligned_cols=347 Identities=18% Similarity=0.172 Sum_probs=207.5
Q ss_pred HHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-cccccEEEEcCCHHHHHhHH
Q 010028 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVN 118 (520)
Q Consensus 40 ~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-~~~~~vlil~Pt~~La~q~~ 118 (520)
..++..+|+..|+++|.++++.++. ++++++++|||+|||+++++++++.+.... ..+.++||++|+++|+.|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~- 77 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQN- 77 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHH-
T ss_pred CCcccccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHH-
Confidence 3456678999999999999999876 899999999999999999999998776542 1236899999999999994
Q ss_pred hhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccccccc
Q 010028 119 SARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 198 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 198 (520)
...+..+....++++..++|+.....+...
T Consensus 78 --------------------------------------~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~------------ 107 (696)
T 2ykg_A 78 --------------------------------------KSVFSKYFERHGYRVTGISGATAENVPVEQ------------ 107 (696)
T ss_dssp --------------------------------------HHHHHHHTTTTTCCEEEECSSSCSSSCHHH------------
T ss_pred --------------------------------------HHHHHHHhccCCceEEEEeCCccccccHHH------------
Confidence 444555555567889999998754333222
Q ss_pred CCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH-hhhhHHHHHHhhccCcccccccccc
Q 010028 199 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDAST 277 (520)
Q Consensus 199 ~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~ 277 (520)
+..+++|+|+||+.|.+.+.......+..+++|||||||++.+.. +...+...+.....
T Consensus 108 ---------~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~----------- 167 (696)
T 2ykg_A 108 ---------IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG----------- 167 (696)
T ss_dssp ---------HHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT-----------
T ss_pred ---------hccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhc-----------
Confidence 224679999999999999887443368899999999999865332 11222222221100
Q ss_pred cccccccchhhhcccccccCCCCCCccchheeeecccccCCc--------hhhhh---------------------cccC
Q 010028 278 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--------NKLAQ---------------------LDLH 328 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~--------~~~~~---------------------~~l~ 328 (520)
....+..+++++|||+.... ..+.. .+..
T Consensus 168 ----------------------~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~ 225 (696)
T 2ykg_A 168 ----------------------GSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVY 225 (696)
T ss_dssp ----------------------TCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSC
T ss_pred ----------------------ccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcC
Confidence 00112346788888875210 00000 0000
Q ss_pred Cceeeec--ccc-----------------------------------cc-------------------------------
Q 010028 329 HPLFLTT--GET-----------------------------------RY------------------------------- 340 (520)
Q Consensus 329 ~~~~~~~--~~~-----------------------------------~~------------------------------- 340 (520)
.|..... ... ..
T Consensus 226 ~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (696)
T 2ykg_A 226 KPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 305 (696)
T ss_dssp CCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHH
T ss_pred CCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHH
Confidence 0100000 000 00
Q ss_pred ------------------------------------------cCccccchhhhh----------------ccCCCcHHHH
Q 010028 341 ------------------------------------------KLPERLESYKLI----------------CESKLKPLYL 362 (520)
Q Consensus 341 ------------------------------------------~~~~~~~~~~~~----------------~~~~~k~~~l 362 (520)
.....+.+.... .....|...+
T Consensus 306 ~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L 385 (696)
T 2ykg_A 306 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDL 385 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 000000000000 0134567777
Q ss_pred HHHHHhc----CCCcEEEEecCHHHHHHHHHHHhhcCC-CceeEEEe--------ccccCHHHHHHHHHHHHc-CCceEE
Q 010028 363 VALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEY--------SGLQRQSVRSKTLKAFRE-GKIQVL 428 (520)
Q Consensus 363 ~~~~~~~----~~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~~v~~~--------~~~~~~~~r~~~~~~f~~-g~~~vL 428 (520)
..++... .++++||||+++..++.+++.|+..+. ..+.+..+ |++|+..+|.++++.|++ |+.+||
T Consensus 386 ~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vL 465 (696)
T 2ykg_A 386 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 465 (696)
T ss_dssp HHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCS
T ss_pred HHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEE
Confidence 7777765 678999999999999999999998642 12566666 569999999999999998 999999
Q ss_pred EEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHH
Q 010028 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485 (520)
Q Consensus 429 v~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 485 (520)
|||+++++|+|+|++++||+||+|.|...|+||+|| ||. +.|.++.++...+...
T Consensus 466 VaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 466 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp EEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred EEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 999999999999999999999999999999999999 998 6899999999877633
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.9e-39 Score=360.67 Aligned_cols=350 Identities=17% Similarity=0.237 Sum_probs=247.9
Q ss_pred HCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 45 ~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.+|| .|+++|.++++.++. +++++++||||||||++++++++..+. .+.++||++||++|+.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~----- 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLE----- 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHH-----
T ss_pred hcCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHH-----
Confidence 3677 799999999999876 899999999999999988888777652 45689999999999999544
Q ss_pred cccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhH
Q 010028 125 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 204 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (520)
.+..++ ..++++..++|+.+...+...+
T Consensus 140 ----------------------------------~l~~l~-~~~i~v~~l~Gg~~~~er~~~~----------------- 167 (1104)
T 4ddu_A 140 ----------------------------------RLQKLA-DEKVKIFGFYSSMKKEEKEKFE----------------- 167 (1104)
T ss_dssp ----------------------------------HHHTTS-CTTSCEEEECTTCCTTHHHHHH-----------------
T ss_pred ----------------------------------HHHHhh-CCCCeEEEEeCCCCHHHHHHHH-----------------
Confidence 444444 4578999999998863332221
Q ss_pred HHhhcc-CCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-----------HHhhhh-HHHHHHhhccCcccc
Q 010028 205 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENR 271 (520)
Q Consensus 205 ~~~~~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-----------~~~~~~-l~~i~~~~~~~~~~~ 271 (520)
..+.. .++|+|+||+++.+++.. +.+.++++||+||||++.. .++... +..++..++....
T Consensus 168 -~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~-- 241 (1104)
T 4ddu_A 168 -KSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI-- 241 (1104)
T ss_dssp -HHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSC--
T ss_pred -HHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchh--
Confidence 12333 489999999999887764 5677899999999987653 333334 5666665541100
Q ss_pred cccccccccccccchhhhcccccccCCCCCCccchheeeecccc-cCCchh-hhhcccCCceeeecccccccCccccchh
Q 010028 272 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL-TQDPNK-LAQLDLHHPLFLTTGETRYKLPERLESY 349 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 349 (520)
..........|++++|||+ +..... +....+. +...... .....+.+.
T Consensus 242 -------------------------~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~ 291 (1104)
T 4ddu_A 242 -------------------------YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHV 291 (1104)
T ss_dssp -------------------------CCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEE
T ss_pred -------------------------hhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeE
Confidence 0000001356899999994 433332 1221111 1111111 123333333
Q ss_pred hhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEE-EeccccCHHHHHHHHHHHHcCCceEE
Q 010028 350 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVL 428 (520)
Q Consensus 350 ~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~-~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (520)
...+ .+...+..++... ++++||||++++.++.++..|+..+ +.+. .+||. |.+ ++.|++|+.+||
T Consensus 292 ~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFK---FNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EESC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred EEec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 3332 4667777777774 4899999999999999999999875 7887 89982 555 999999999999
Q ss_pred EE----ecccccCCCCCC-CcEEEEccCCC--------------------------------------------------
Q 010028 429 VS----SDAMTRGMDVEG-VNNVVNYDKPA-------------------------------------------------- 453 (520)
Q Consensus 429 v~----T~~~~~Gidl~~-~~~VI~~~~p~-------------------------------------------------- 453 (520)
|| |+++++|+|+|+ +++||++|+|.
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 438 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFV 438 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99 999999999999 99999999998
Q ss_pred ----------------------CHHHHHHHHhhcccCCCCC--cEEEEEecchHHHHHHHHHHhcC-CCCCcccCCchhh
Q 010028 454 ----------------------YIKTYIHRAGRTARAGQLG--RCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLI 508 (520)
Q Consensus 454 ----------------------s~~~~~Q~~GR~~R~~~~g--~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 508 (520)
+...|+||+||+||.+..| +++.++..+|.+.++.+.+.+.. ......++++..+
T Consensus 439 ~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 439 EKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCH
Confidence 7789999999999976432 45555555777778777777652 1334444544433
Q ss_pred h
Q 010028 509 E 509 (520)
Q Consensus 509 ~ 509 (520)
+
T Consensus 519 ~ 519 (1104)
T 4ddu_A 519 K 519 (1104)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.4e-39 Score=373.20 Aligned_cols=395 Identities=18% Similarity=0.188 Sum_probs=275.2
Q ss_pred cCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..|++...+..+|.. .|+....+++...+|..++|.|.++++.+++ .+++++++||||||||+++.+++++.+.
T Consensus 895 ~~~t~lldl~plp~s---~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~ 968 (1724)
T 4f92_B 895 PPPTELLDLQPLPVS---ALRNSAFESLYQDKFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLL 968 (1724)
T ss_dssp CCCCCCCCCCCCBGG---GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred CCCCccccCCCCCcc---cccCHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHH
Confidence 334444444444433 3566677777777899999999999999887 5789999999999999999999999887
Q ss_pred hhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEecc
Q 010028 96 NRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAV 175 (520)
Q Consensus 96 ~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (520)
.. .+.++||++|+++||.|.++. ....++...+++|..++
T Consensus 969 ~~--~~~kavyi~P~raLa~q~~~~--------------------------------------~~~~f~~~~g~~V~~lt 1008 (1724)
T 4f92_B 969 QS--SEGRCVYITPMEALAEQVYMD--------------------------------------WYEKFQDRLNKKVVLLT 1008 (1724)
T ss_dssp HC--TTCCEEEECSCHHHHHHHHHH--------------------------------------HHHHHTTTSCCCEEECC
T ss_pred hC--CCCEEEEEcChHHHHHHHHHH--------------------------------------HHHHhchhcCCEEEEEE
Confidence 64 456899999999999995333 22345556688999999
Q ss_pred CccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC-cccccccEEEeehHHHHHHHHhh
Q 010028 176 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQ 254 (520)
Q Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~~~~~~~lViDEah~l~~~~~~ 254 (520)
|+.....+. ...++|+||||+++..++.+... ..++++++||+||+|.+.+ ..+
T Consensus 1009 Gd~~~~~~~------------------------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg 1063 (1724)
T 4f92_B 1009 GETSTDLKL------------------------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENG 1063 (1724)
T ss_dssp SCHHHHHHH------------------------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTH
T ss_pred CCCCcchhh------------------------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCC
Confidence 986643331 13569999999998777765333 3478899999999998754 456
Q ss_pred hhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcc-cCCceee
Q 010028 255 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD-LHHPLFL 333 (520)
Q Consensus 255 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~-l~~~~~~ 333 (520)
..++.++.++.... .....++|+|++|||++ +...+..+. .......
T Consensus 1064 ~~le~il~rl~~i~-------------------------------~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~ 1111 (1724)
T 4f92_B 1064 PVLEVICSRMRYIS-------------------------------SQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTF 1111 (1724)
T ss_dssp HHHHHHHHHHHHHH-------------------------------HTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEE
T ss_pred ccHHHHHHHHHHHH-------------------------------hhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeE
Confidence 66666666543210 00113568999999996 455554433 3322333
Q ss_pred ecccccccCccccchhhhhccCCC-------cHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcC----------
Q 010028 334 TTGETRYKLPERLESYKLICESKL-------KPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFG---------- 395 (520)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~---------- 395 (520)
.........+-. .+........ ....+...+.. ..++++||||+|++.|+.++..|....
T Consensus 1112 ~~~~~~RPvpL~--~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~ 1189 (1724)
T 4f92_B 1112 NFHPNVRPVPLE--LHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFL 1189 (1724)
T ss_dssp ECCGGGCSSCEE--EEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTB
T ss_pred EeCCCCCCCCeE--EEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhh
Confidence 333222222211 1110011111 11122333333 367789999999999999887764310
Q ss_pred ---------------------CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE----c-
Q 010028 396 ---------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----Y- 449 (520)
Q Consensus 396 ---------------------~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~----~- 449 (520)
....++.++|++|+..+|..+.+.|++|.++|||||+++++|||+|..++||. |
T Consensus 1190 ~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~d 1269 (1724)
T 4f92_B 1190 HCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYN 1269 (1724)
T ss_dssp CSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEE
T ss_pred cccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCcccc
Confidence 01235899999999999999999999999999999999999999998888873 2
Q ss_pred -----cCCCCHHHHHHHHhhcccCCC--CCcEEEEEecchHHHHHHHHHHhcCCCCCc-ccCCchhhhhhhhccccCC
Q 010028 450 -----DKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVKRFKKLLQKADNDSCPI-HSIPSSLIESLRPVYKSGD 519 (520)
Q Consensus 450 -----~~p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 519 (520)
..|.+..+|.||+||+||.|. .|.|++++...+...+++++.. ..|. ..+...+.+++..++..|.
T Consensus 1270 g~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~----~~pveS~L~~~l~~~l~~eI~~~~ 1343 (1724)
T 4f92_B 1270 GKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE----PLPVESHLDHCMHDHFNAEIVTKT 1343 (1724)
T ss_dssp TTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS----CBCCCCCGGGSCHHHHHHHHHTTS
T ss_pred CcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCC----CCceeeecccchHHHHHHHHHhcc
Confidence 235689999999999999996 5899999999999988888632 2222 3344555556666665554
No 27
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.5e-39 Score=364.41 Aligned_cols=351 Identities=20% Similarity=0.287 Sum_probs=254.9
Q ss_pred HHHHHH-HCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 39 LKVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 39 ~~~~l~-~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
+.+.+. .+||. | ++|.++|+.++. +++++++||||||||+ +.+|++..+.. .+.++||++||++|+.|+
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~ 115 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQA 115 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHH
Confidence 334444 48998 9 999999999886 8999999999999998 88888887754 356899999999999995
Q ss_pred HhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccc----eEEeccCccchHHHHHHHhhcccc
Q 010028 118 NSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKL 193 (520)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~g~~~~~~~~~~~~~~~~~ 193 (520)
++ .+..+....++ ++.+++|+.+...+....
T Consensus 116 ~~---------------------------------------~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~------ 150 (1054)
T 1gku_B 116 AE---------------------------------------TIRKYAEKAGVGTENLIGYYHGRIPKREKENFM------ 150 (1054)
T ss_dssp HH---------------------------------------HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHH------
T ss_pred HH---------------------------------------HHHHHHhhcCCCccceEEEEeCCCChhhHHHHH------
Confidence 44 44544444556 899999998876643221
Q ss_pred cccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccc
Q 010028 194 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273 (520)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~ 273 (520)
..+.. ++|+|+||++|.+.+.+ ++++++||+||||++++ ++..+..++..+.......
T Consensus 151 ------------~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~-- 208 (1054)
T 1gku_B 151 ------------QNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLK-- 208 (1054)
T ss_dssp ------------HSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETT--
T ss_pred ------------hhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhh--
Confidence 22334 89999999999887765 56899999999999886 5666777776654211000
Q ss_pred cccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhc
Q 010028 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
........+.+++|||++.. ..+......++..+........ ...+.+...
T Consensus 209 -------------------------~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~-~~~i~~~~~-- 259 (1054)
T 1gku_B 209 -------------------------TKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRIT-VRNVEDVAV-- 259 (1054)
T ss_dssp -------------------------TTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEEC-CCCEEEEEE--
T ss_pred -------------------------hhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccC-cCCceEEEe--
Confidence 00011345789999999877 5444433333333333222211 222333222
Q ss_pred cCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEE---
Q 010028 354 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS--- 430 (520)
Q Consensus 354 ~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~--- 430 (520)
...+...+..++... ++++||||++++.++.+++.|+.. +.+..+||++ .++++.|++|+.+||||
T Consensus 260 -~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~----~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas 328 (1054)
T 1gku_B 260 -NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK----FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAH 328 (1054)
T ss_dssp -SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS----SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC
T ss_pred -chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc----cCeeEEeccH-----HHHHHHHHcCCCcEEEEecC
Confidence 245555666666665 578999999999999999999864 6899999998 37889999999999999
Q ss_pred -ecccccCCCCCCC-cEEEEccCC--------------------------------------------------------
Q 010028 431 -SDAMTRGMDVEGV-NNVVNYDKP-------------------------------------------------------- 452 (520)
Q Consensus 431 -T~~~~~Gidl~~~-~~VI~~~~p-------------------------------------------------------- 452 (520)
|+++++|+|+|+| ++||+++.|
T Consensus 329 ~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (1054)
T 1gku_B 329 YYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKER 408 (1054)
T ss_dssp ------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSC
T ss_pred CCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999996 999999999
Q ss_pred ---------------CCHHHHHHHHhhcccCCCCC--cEEEEEecchHHHHHHHHHHhcCCCCCcccCCch
Q 010028 453 ---------------AYIKTYIHRAGRTARAGQLG--RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 506 (520)
Q Consensus 453 ---------------~s~~~~~Q~~GR~~R~~~~g--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (520)
.|...|+||+||+||.|+.| .+++|+..++.+.++.+.+.+........++++.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~ 479 (1054)
T 1gku_B 409 PQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEV 479 (1054)
T ss_dssp CSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCC
T ss_pred ccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcC
Confidence 78999999999999987665 5888888889888888888887633333444433
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.3e-40 Score=348.57 Aligned_cols=337 Identities=18% Similarity=0.209 Sum_probs=217.6
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-cccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
.|+++|.++++.++. ++++++.+|||+|||++|++|+++.+.... ..+.++||++|+++|+.|+
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~----------- 68 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQ----------- 68 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHH-----------
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHH-----------
Confidence 799999999999876 899999999999999999999998887642 1267899999999999994
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
...+..+....++++..++|+.....+... .
T Consensus 69 ----------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~ 99 (555)
T 3tbk_A 69 ----------------------------ATVFSRYFERLGYNIASISGATSDSVSVQH---------------------I 99 (555)
T ss_dssp ----------------------------HHHHHHHHHTTTCCEEEECTTTGGGSCHHH---------------------H
T ss_pred ----------------------------HHHHHHHhccCCcEEEEEcCCCcchhhHHH---------------------H
Confidence 444555555557889999998765444322 2
Q ss_pred ccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH-hhhhHHHHHHhhccCcccccccccccccccccchh
Q 010028 209 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 287 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
..+++|+|+||+.+...+.......+..+++||+||||++.+.. +...+...+.....
T Consensus 100 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~--------------------- 158 (555)
T 3tbk_A 100 IEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG--------------------- 158 (555)
T ss_dssp HHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS---------------------
T ss_pred hcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc---------------------
Confidence 23579999999999999887543378899999999999986543 22222222222110
Q ss_pred hhcccccccCCCCCCccchheeeecccccCCc--------hhhh---h------------------cccCCceeeecccc
Q 010028 288 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--------NKLA---Q------------------LDLHHPLFLTTGET 338 (520)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~--------~~~~---~------------------~~l~~~~~~~~~~~ 338 (520)
....+..+++++|||+.... ..+. . .+...|........
T Consensus 159 ------------~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 226 (555)
T 3tbk_A 159 ------------ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVA 226 (555)
T ss_dssp ------------SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECC
T ss_pred ------------cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEec
Confidence 01113457899999996431 1000 0 00011110000000
Q ss_pred cccCcc------------------------------------------ccc-----------------------------
Q 010028 339 RYKLPE------------------------------------------RLE----------------------------- 347 (520)
Q Consensus 339 ~~~~~~------------------------------------------~~~----------------------------- 347 (520)
. ..+. .+.
T Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (555)
T 3tbk_A 227 S-RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTS 305 (555)
T ss_dssp C-CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHH
T ss_pred C-cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
Confidence 0 0000 000
Q ss_pred -------------------------hh-------------------------------hhhccCCCcHHHHHHHHHh---
Q 010028 348 -------------------------SY-------------------------------KLICESKLKPLYLVALLQS--- 368 (520)
Q Consensus 348 -------------------------~~-------------------------------~~~~~~~~k~~~l~~~~~~--- 368 (520)
.+ ........|...+..++..
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 306 HLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 00 0000124456666666654
Q ss_pred -cCCCcEEEEecCHHHHHHHHHHHhhcCC---------CceeEEEeccccCHHHHHHHHHHHHc-CCceEEEEecccccC
Q 010028 369 -LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRG 437 (520)
Q Consensus 369 -~~~~k~lIf~~s~~~~~~l~~~L~~~~~---------~~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~G 437 (520)
..++++||||+++.+++.++..|+..+. .+.....+||+|+..+|.++++.|++ |+.+|||||+++++|
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~G 465 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEG 465 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCC
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcC
Confidence 3668999999999999999999987531 12344455679999999999999999 999999999999999
Q ss_pred CCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHH
Q 010028 438 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 486 (520)
Q Consensus 438 idl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~ 486 (520)
+|+|++++||+||+|+|+..|+||+|| ||. +.|.+++|+.+.+....
T Consensus 466 lDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 466 IDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp EETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 999999999999999999999999999 998 79999999998765433
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-38 Score=330.75 Aligned_cols=323 Identities=25% Similarity=0.303 Sum_probs=233.1
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.|+++|.++++.++. + ++++.+|||+|||++++++++..+. ..+.++||++|+++|+.|++++
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~--------- 71 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPTKPLVLQHAES--------- 71 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSSHHHHHHHHHH---------
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHH---------
Confidence 799999999998876 4 9999999999999999998887765 2456899999999999995444
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
+..+......++..++|+......... .
T Consensus 72 ------------------------------~~~~~~~~~~~v~~~~g~~~~~~~~~~----------------------~ 99 (494)
T 1wp9_A 72 ------------------------------FRRLFNLPPEKIVALTGEKSPEERSKA----------------------W 99 (494)
T ss_dssp ------------------------------HHHHBCSCGGGEEEECSCSCHHHHHHH----------------------H
T ss_pred ------------------------------HHHHhCcchhheEEeeCCcchhhhhhh----------------------c
Confidence 444443334578888888765543222 2
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhh
Q 010028 210 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 289 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (520)
..++|+|+||+.+...+.. ....+.++++||+||||++.+......+...+....
T Consensus 100 ~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~------------------------ 154 (494)
T 1wp9_A 100 ARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA------------------------ 154 (494)
T ss_dssp HHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC------------------------
T ss_pred cCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC------------------------
Confidence 3568999999999988876 345678899999999998764322222222222211
Q ss_pred cccccccCCCCCCccchheeeecccccCCchhhhh---cc-cCCceeeeccc--------------ccccCccccc----
Q 010028 290 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ---LD-LHHPLFLTTGE--------------TRYKLPERLE---- 347 (520)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~---~~-l~~~~~~~~~~--------------~~~~~~~~~~---- 347 (520)
+..+++++|||+..+...+.. .. ...+....... .....+....
T Consensus 155 --------------~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (494)
T 1wp9_A 155 --------------KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRK 220 (494)
T ss_dssp --------------SSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHH
T ss_pred --------------CCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHH
Confidence 134689999999744322211 00 00000000000 0000000000
Q ss_pred ------------------------------------------------------------------------------hh
Q 010028 348 ------------------------------------------------------------------------------SY 349 (520)
Q Consensus 348 ------------------------------------------------------------------------------~~ 349 (520)
.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (494)
T 1wp9_A 221 LLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAY 300 (494)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 00
Q ss_pred -----------------------------------hhhccCCCcHHHHHHHHHh----cCCCcEEEEecCHHHHHHHHHH
Q 010028 350 -----------------------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTL 390 (520)
Q Consensus 350 -----------------------------------~~~~~~~~k~~~l~~~~~~----~~~~k~lIf~~s~~~~~~l~~~ 390 (520)
........|...+..++.. ..++++||||+++..+..+++.
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~ 380 (494)
T 1wp9_A 301 IKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNE 380 (494)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHH
Confidence 0000344566777777766 4788999999999999999999
Q ss_pred HhhcCCCceeEEEecc--------ccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHH
Q 010028 391 LNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 462 (520)
Q Consensus 391 L~~~~~~~~~v~~~~~--------~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~ 462 (520)
|+..+ +.+..+|| +++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+|+..|.||+
T Consensus 381 L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~ 457 (494)
T 1wp9_A 381 LVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRR 457 (494)
T ss_dssp HHHTT---CCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHH
T ss_pred HHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHH
Confidence 99865 78999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCcEEEEEecchHH
Q 010028 463 GRTARAGQLGRCFTLLHKDEVK 484 (520)
Q Consensus 463 GR~~R~~~~g~~i~~~~~~~~~ 484 (520)
||+||.|+ |.++.|+.+++.+
T Consensus 458 GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 458 GRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp TTSCSCCC-SEEEEEEETTSHH
T ss_pred hhccCCCC-ceEEEEEecCCHH
Confidence 99999996 9999999987543
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.5e-39 Score=352.31 Aligned_cols=339 Identities=19% Similarity=0.194 Sum_probs=198.8
Q ss_pred HCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-cccccEEEEcCCHHHHHhHHhhhhc
Q 010028 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 45 ~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
.+|+..|+++|.++++.++. ++++++++|||+|||++|++|++..+.... ..+.++||++|+++|+.|
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q------- 311 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQ------- 311 (797)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHH-------
T ss_pred hcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHH-------
Confidence 45788999999999998876 799999999999999999999998877642 126789999999999999
Q ss_pred ccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchh
Q 010028 124 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 203 (520)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (520)
+...+..+....++++..++|+.....+...
T Consensus 312 --------------------------------~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----------------- 342 (797)
T 4a2q_A 312 --------------------------------QKNVFKHHFERQGYSVQGISGENFSNVSVEK----------------- 342 (797)
T ss_dssp --------------------------------HHHHHHHHHGGGTCCEEEECCC-----CHHH-----------------
T ss_pred --------------------------------HHHHHHHhcccCCceEEEEeCCcchhhhHHH-----------------
Confidence 4445555555558899999998765443322
Q ss_pred HHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHh-hhhHHHHHHhhccCccccccccccccccc
Q 010028 204 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSA 282 (520)
Q Consensus 204 ~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 282 (520)
+..+++|+|+||+++.+.+.......+..+++|||||||++..... ...+..++.....
T Consensus 343 ----~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~---------------- 402 (797)
T 4a2q_A 343 ----VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN---------------- 402 (797)
T ss_dssp ----HHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT----------------
T ss_pred ----hhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc----------------
Confidence 2346799999999999988864433788999999999998765432 2222222221100
Q ss_pred ccchhhhcccccccCCCCCCccchheeeecccccCCc--------hhhh---------------------hcccCCceee
Q 010028 283 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--------NKLA---------------------QLDLHHPLFL 333 (520)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~--------~~~~---------------------~~~l~~~~~~ 333 (520)
...+..+++++|||+.... ..+. ..+...|...
T Consensus 403 ------------------~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~ 464 (797)
T 4a2q_A 403 ------------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEID 464 (797)
T ss_dssp ------------------TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCE
T ss_pred ------------------cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceE
Confidence 0113457899999985321 0000 0011111100
Q ss_pred eccccccc------------------------------C-----cc-----ccch-------------------------
Q 010028 334 TTGETRYK------------------------------L-----PE-----RLES------------------------- 348 (520)
Q Consensus 334 ~~~~~~~~------------------------------~-----~~-----~~~~------------------------- 348 (520)
........ . .. .+..
T Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 544 (797)
T 4a2q_A 465 VRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 544 (797)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHH
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 00000000 0 00 0000
Q ss_pred -----------------------------h-------------------------------hhhccCCCcHHHHHHHHHh
Q 010028 349 -----------------------------Y-------------------------------KLICESKLKPLYLVALLQS 368 (520)
Q Consensus 349 -----------------------------~-------------------------------~~~~~~~~k~~~l~~~~~~ 368 (520)
+ ........|...+..++..
T Consensus 545 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (797)
T 4a2q_A 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (797)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 0 0000024456666666654
Q ss_pred ----cCCCcEEEEecCHHHHHHHHHHHhhcCC---------CceeEEEeccccCHHHHHHHHHHHHc-CCceEEEEeccc
Q 010028 369 ----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAM 434 (520)
Q Consensus 369 ----~~~~k~lIf~~s~~~~~~l~~~L~~~~~---------~~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~ 434 (520)
..+.++||||+++.++..+++.|+..+. .+.....+||+|+..+|.++++.|++ |+.+|||||+++
T Consensus 625 ~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~ 704 (797)
T 4a2q_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA 704 (797)
T ss_dssp HHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-
T ss_pred HhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCch
Confidence 4678999999999999999999987410 23455667889999999999999999 999999999999
Q ss_pred ccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchH
Q 010028 435 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483 (520)
Q Consensus 435 ~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 483 (520)
++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.+++|+.+.+.
T Consensus 705 ~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 705 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred hcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999 998 79999999988664
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-38 Score=349.95 Aligned_cols=325 Identities=20% Similarity=0.232 Sum_probs=239.0
Q ss_pred HHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 44 ~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
..++| .|+++|.+|++.+.. ++++++++|||+|||+++.++++..+. .+.++||++|+++|+.|+++++
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~----~g~rvL~l~PtkaLa~Q~~~~l-- 149 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK----NKQRVIYTSPIKALSNQKYREL-- 149 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH----TTCEEEEEESSHHHHHHHHHHH--
T ss_pred HhCCC-CCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc----cCCeEEEECChHHHHHHHHHHH--
Confidence 34567 599999999998765 899999999999999999998887664 3468999999999999965553
Q ss_pred ccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchh
Q 010028 124 YCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 203 (520)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (520)
..... .++.++|+...
T Consensus 150 -------------------------------------~~~~~----~vglltGd~~~----------------------- 165 (1010)
T 2xgj_A 150 -------------------------------------LAEFG----DVGLMTGDITI----------------------- 165 (1010)
T ss_dssp -------------------------------------HHHHS----CEEEECSSCEE-----------------------
T ss_pred -------------------------------------HHHhC----CEEEEeCCCcc-----------------------
Confidence 22222 56777777542
Q ss_pred HHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccc
Q 010028 204 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 283 (520)
Q Consensus 204 ~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 283 (520)
...++|+|+||+.|.+.+.+ +...+.++++|||||||++.+..++..+..++..++.
T Consensus 166 -----~~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~----------------- 222 (1010)
T 2xgj_A 166 -----NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD----------------- 222 (1010)
T ss_dssp -----CTTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT-----------------
T ss_pred -----CCCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC-----------------
Confidence 23468999999999988876 3456789999999999999877777667777665432
Q ss_pred cchhhhcccccccCCCCCCccchheeeecccccCCchhhhhc---ccCCceeeecccccccCccccchhhh---------
Q 010028 284 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL---DLHHPLFLTTGETRYKLPERLESYKL--------- 351 (520)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~--------- 351 (520)
..+++++|||++.. ..+..+ ....+..+....... .+ +.++..
T Consensus 223 ---------------------~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~rp-~p--l~~~~~~~~~~~~~~ 277 (1010)
T 2xgj_A 223 ---------------------KVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNFRP-TP--LQHYLFPAHGDGIYL 277 (1010)
T ss_dssp ---------------------TCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECCCS-SC--EEEEEEETTSSCCEE
T ss_pred ---------------------CCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCCCc-cc--ceEEEEecCCcceee
Confidence 45789999998643 222221 112222221111100 00 000000
Q ss_pred -------------------hcc-------------------C--------CCcHHHHHHHHHhcCCCcEEEEecCHHHHH
Q 010028 352 -------------------ICE-------------------S--------KLKPLYLVALLQSLGEEKCIVFTSSVESTH 385 (520)
Q Consensus 352 -------------------~~~-------------------~--------~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~ 385 (520)
... . ......+...+......++||||+++..|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e 357 (1010)
T 2xgj_A 278 VVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCE 357 (1010)
T ss_dssp EECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHH
T ss_pred eeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHH
Confidence 000 0 122333455555556679999999999999
Q ss_pred HHHHHHhhcCCC------------------------------------ceeEEEeccccCHHHHHHHHHHHHcCCceEEE
Q 010028 386 RLCTLLNHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429 (520)
Q Consensus 386 ~l~~~L~~~~~~------------------------------------~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (520)
.++..|...+.. ...+..+||+|+..+|..+++.|++|.++|||
T Consensus 358 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLV 437 (1010)
T 2xgj_A 358 ELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 437 (1010)
T ss_dssp HHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 999998763211 12388999999999999999999999999999
Q ss_pred EecccccCCCCCCCcEEEE----ccC----CCCHHHHHHHHhhcccCCC--CCcEEEEEecc-hHHHHHHHHH
Q 010028 430 SSDAMTRGMDVEGVNNVVN----YDK----PAYIKTYIHRAGRTARAGQ--LGRCFTLLHKD-EVKRFKKLLQ 491 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~----~~~----p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~-~~~~~~~~~~ 491 (520)
||+++++|+|+|++++||+ ||. |.|..+|.||+||+||.|. .|.|++++.+. +...+++++.
T Consensus 438 AT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 438 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp EEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred EehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 9999999999999999999 988 8899999999999999996 49999999875 6666666643
No 32
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-38 Score=366.61 Aligned_cols=370 Identities=19% Similarity=0.229 Sum_probs=260.6
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-------cccccEEEEcCCHHHHHhHHh
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVVLPTRDLALQVNS 119 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-------~~~~~vlil~Pt~~La~q~~~ 119 (520)
||..|++.|.++++.++. ++++++++||||||||+++.+++++.+.+.. ..+.++||++|+++||.|.
T Consensus 76 g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~-- 150 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM-- 150 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHH--
T ss_pred CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHH--
Confidence 789999999999999886 5899999999999999999999999987532 2356899999999999994
Q ss_pred hhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccC
Q 010028 120 ARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 199 (520)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 199 (520)
.+.+.......+++|..++|+.....+
T Consensus 151 -------------------------------------~~~l~~~~~~~gi~V~~~tGd~~~~~~---------------- 177 (1724)
T 4f92_B 151 -------------------------------------VGSFGKRLATYGITVAELTGDHQLCKE---------------- 177 (1724)
T ss_dssp -------------------------------------HHHHHHHHTTTTCCEEECCSSCSSCCT----------------
T ss_pred -------------------------------------HHHHHHHHhhCCCEEEEEECCCCCCcc----------------
Confidence 444444444568899999998654322
Q ss_pred CchhHHHhhccCCcEEEeCchHHHHHHhcCCC-cccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccccccc
Q 010028 200 DPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 278 (520)
Q Consensus 200 ~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 278 (520)
...+++|+||||+++..++.+... ..++.+++|||||+|.+.+ ..+..++.++.++.....
T Consensus 178 --------~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~--------- 239 (1724)
T 4f92_B 178 --------EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIE--------- 239 (1724)
T ss_dssp --------TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHH---------
T ss_pred --------ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHH---------
Confidence 123579999999998666654332 2478899999999997644 566666666654321000
Q ss_pred ccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCce--eeecccccccCccccchhhhhccCC
Q 010028 279 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESK 356 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
...+.+|+|++|||++ +...+.++....+. ......... |..+.+........
T Consensus 240 ----------------------~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~~R--PvpL~~~~~~~~~~ 294 (1724)
T 4f92_B 240 ----------------------MTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNSFR--PVPLEQTYVGITEK 294 (1724)
T ss_dssp ----------------------HHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGGGC--SSCEEEECCEECCC
T ss_pred ----------------------hCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCCCc--cCccEEEEeccCCc
Confidence 0013468999999995 55555554332211 111111111 11122222111211
Q ss_pred Cc---HHH----HHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcC---------------------------------
Q 010028 357 LK---PLY----LVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFG--------------------------------- 395 (520)
Q Consensus 357 ~k---~~~----l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~--------------------------------- 395 (520)
.. ... +...+.+. .++++||||+|++.|+.+++.|.+..
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (1724)
T 4f92_B 295 KAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELK 374 (1724)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHH
Confidence 11 111 22222222 56689999999999999988875421
Q ss_pred -CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE----cc------CCCCHHHHHHHHhh
Q 010028 396 -ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGR 464 (520)
Q Consensus 396 -~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~----~~------~p~s~~~~~Q~~GR 464 (520)
....++.++||+|+..+|..+.+.|++|..+|||||+++++|||+|..++||. |+ .|.+..+|.||+||
T Consensus 375 ~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GR 454 (1724)
T 4f92_B 375 DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGR 454 (1724)
T ss_dssp HHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTT
T ss_pred HHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhh
Confidence 01235889999999999999999999999999999999999999999988884 33 34589999999999
Q ss_pred cccCCC--CCcEEEEEecchHHHHHHHHHHhcCCCCCcccCCchhhhhhhhccccCCC
Q 010028 465 TARAGQ--LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 520 (520)
Q Consensus 465 ~~R~~~--~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (520)
|||.|. .|.++++...++...+..++. ....-+.++.+.+.+.++++...|.|
T Consensus 455 AGR~g~d~~G~~ii~~~~~~~~~~~~ll~---~~~pieS~l~~~l~d~L~aeI~~g~i 509 (1724)
T 4f92_B 455 AGRPQYDTKGEGILITSHGELQYYLSLLN---QQLPIESQMVSKLPDMLNAEIVLGNV 509 (1724)
T ss_dssp BSCTTTCSCEEEEEEEESTTCCHHHHHTT---TCSCCCCCTTTTHHHHHHHHHHHTSC
T ss_pred ccCCCCCCccEEEEEecchhHHHHHHHHc---CCCcchhhccccHHHHHHHHHHHhhc
Confidence 999885 589999999999888887764 22223355677777888877766653
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-37 Score=346.09 Aligned_cols=338 Identities=18% Similarity=0.208 Sum_probs=198.1
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-cccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.++..|+++|.++++.++. ++++++.+|||+|||+++++|++..+.... ..+.++||++|+++|+.|+++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~----- 314 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKN----- 314 (936)
T ss_dssp ----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHH-----
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHH-----
Confidence 4678999999999999876 899999999999999999999988776531 116689999999999999544
Q ss_pred cccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhH
Q 010028 125 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 204 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (520)
.+..+....++++..++|+.....+...
T Consensus 315 ----------------------------------~~~~~~~~~~~~v~~~~G~~~~~~~~~~------------------ 342 (936)
T 4a2w_A 315 ----------------------------------VFKHHFERQGYSVQGISGENFSNVSVEK------------------ 342 (936)
T ss_dssp ----------------------------------HHHHHHHTTTCCEEEECCC-----CCHH------------------
T ss_pred ----------------------------------HHHHHhcccCceEEEEECCcchhhHHHH------------------
Confidence 4455544457889999998764443222
Q ss_pred HHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH-hhhhHHHHHHhhccCcccccccccccccccc
Q 010028 205 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAF 283 (520)
Q Consensus 205 ~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 283 (520)
+..+++|+|+||+++.+.+.......+..+++||+||||++.... +...+..++.....
T Consensus 343 ---~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~----------------- 402 (936)
T 4a2w_A 343 ---VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN----------------- 402 (936)
T ss_dssp ---HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT-----------------
T ss_pred ---hccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc-----------------
Confidence 223579999999999999887443368889999999999876542 22222222221110
Q ss_pred cchhhhcccccccCCCCCCccchheeeecccccCCch-h-------hh---------------------hcccCCceeee
Q 010028 284 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-K-------LA---------------------QLDLHHPLFLT 334 (520)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-~-------~~---------------------~~~l~~~~~~~ 334 (520)
...+..+++++|||+..... . +. ..+...|....
T Consensus 403 -----------------~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~ 465 (936)
T 4a2w_A 403 -----------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 465 (936)
T ss_dssp -----------------TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEE
T ss_pred -----------------cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceE
Confidence 01134578999999853210 0 00 00111111110
Q ss_pred ccccc-c----------------------------------cCcc-----cc----------------------------
Q 010028 335 TGETR-Y----------------------------------KLPE-----RL---------------------------- 346 (520)
Q Consensus 335 ~~~~~-~----------------------------------~~~~-----~~---------------------------- 346 (520)
..... . .... .+
T Consensus 466 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~ 545 (936)
T 4a2w_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545 (936)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 00000 0 0000 00
Q ss_pred --------------------------chhh-------------------------------hhccCCCcHHHHHHHHHh-
Q 010028 347 --------------------------ESYK-------------------------------LICESKLKPLYLVALLQS- 368 (520)
Q Consensus 347 --------------------------~~~~-------------------------------~~~~~~~k~~~l~~~~~~- 368 (520)
..+. .......|...+..++..
T Consensus 546 ~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (936)
T 4a2w_A 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (936)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 0000 000024466666677765
Q ss_pred ---cCCCcEEEEecCHHHHHHHHHHHhhcCC---------CceeEEEeccccCHHHHHHHHHHHHc-CCceEEEEecccc
Q 010028 369 ---LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMT 435 (520)
Q Consensus 369 ---~~~~k~lIf~~s~~~~~~l~~~L~~~~~---------~~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~ 435 (520)
..+.++||||+++.+++.+++.|..... .+.....+||+|+..+|.++++.|++ |+.+|||||++++
T Consensus 626 ~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~ 705 (936)
T 4a2w_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 705 (936)
T ss_dssp TTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC--
T ss_pred hccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchh
Confidence 3568999999999999999999987510 12445567899999999999999999 9999999999999
Q ss_pred cCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchH
Q 010028 436 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483 (520)
Q Consensus 436 ~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 483 (520)
+|+|+|++++||+||+|+|+..|+||+|| ||. +.|.+++++...+.
T Consensus 706 eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred cCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999 998 68999999988654
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.2e-38 Score=336.46 Aligned_cols=329 Identities=17% Similarity=0.196 Sum_probs=232.4
Q ss_pred CHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCC--CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~--~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
.+.+...+..++| .|+++|.++++.+...+..+ .+++++||||||||++++++++..+.. +.+++|++||++|
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~L 429 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSIL 429 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHH
Confidence 4566666788999 99999999999988744333 489999999999999999999987753 4589999999999
Q ss_pred HHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccc
Q 010028 114 ALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 193 (520)
Q Consensus 114 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 193 (520)
+.|+++ .+..+....++++..++|+.+...+...+..
T Consensus 430 a~Q~~~---------------------------------------~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~---- 466 (780)
T 1gm5_A 430 AIQHYR---------------------------------------RTVESFSKFNIHVALLIGATTPSEKEKIKSG---- 466 (780)
T ss_dssp HHHHHH---------------------------------------HHHHHHTCSSCCEEECCSSSCHHHHHHHHHH----
T ss_pred HHHHHH---------------------------------------HHHHHhhhcCceEEEEeCCCCHHHHHHHHHH----
Confidence 999544 4455555567899999999876655333211
Q ss_pred cccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccc
Q 010028 194 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 273 (520)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~ 273 (520)
.....++|+|+||+.+.+ ...+.++++||+||+|++..... ..+
T Consensus 467 -------------l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~~qr--------~~l--------- 510 (780)
T 1gm5_A 467 -------------LRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGVKQR--------EAL--------- 510 (780)
T ss_dssp -------------HHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-------------CCC---------
T ss_pred -------------HhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhHHHH--------HHH---------
Confidence 122358999999987743 24578899999999997521110 000
Q ss_pred cccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhc
Q 010028 274 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
.......+++++|||+.+...........+...+...+.. ...+. ...
T Consensus 511 --------------------------~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~---r~~i~---~~~ 558 (780)
T 1gm5_A 511 --------------------------MNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG---RKEVQ---TML 558 (780)
T ss_dssp --------------------------CSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS---CCCCE---ECC
T ss_pred --------------------------HHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC---CcceE---EEE
Confidence 0001245789999998654333222111111111111100 01111 111
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEecCHH--------HHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC
Q 010028 354 ESKLKPLYLVALLQSL--GEEKCIVFTSSVE--------STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423 (520)
Q Consensus 354 ~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~--------~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 423 (520)
....+...+...+... .+++++|||++.+ .++.+++.|.....++..+..+||+|+..+|.++++.|++|
T Consensus 559 ~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G 638 (780)
T 1gm5_A 559 VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG 638 (780)
T ss_dssp CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT
T ss_pred eccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC
Confidence 1233444455555432 5678999999764 46778888876112357899999999999999999999999
Q ss_pred CceEEEEecccccCCCCCCCcEEEEccCCC-CHHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 424 ~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~-s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++.+
T Consensus 639 ~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 639 RYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999999999999999999999986 688999999999999999999999874
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.1e-37 Score=340.91 Aligned_cols=327 Identities=16% Similarity=0.152 Sum_probs=236.0
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
++| .|+++|.++++.+.. ++++++.+|||+|||++|++++...+. .+.+++|++|+++|+.|+++.+++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~----~g~~vlvl~PtraLa~Q~~~~l~~~- 105 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR----NMTKTIYTSPIKALSNQKFRDFKET- 105 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH----TTCEEEEEESCGGGHHHHHHHHHTT-
T ss_pred CCC-CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHH-
Confidence 456 699999999998876 899999999999999999888876543 3458999999999999965554332
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
.. ++.+..++|+...
T Consensus 106 --------------------------------------~~--~~~v~~l~G~~~~------------------------- 120 (997)
T 4a4z_A 106 --------------------------------------FD--DVNIGLITGDVQI------------------------- 120 (997)
T ss_dssp --------------------------------------C----CCEEEECSSCEE-------------------------
T ss_pred --------------------------------------cC--CCeEEEEeCCCcc-------------------------
Confidence 11 5678888887541
Q ss_pred HhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccc
Q 010028 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 285 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (520)
...++|+|+||+.|.+.+... ...+..+++|||||||++.+.+++..+..++..++.
T Consensus 121 ---~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~------------------- 177 (997)
T 4a4z_A 121 ---NPDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQ------------------- 177 (997)
T ss_dssp ---CTTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCT-------------------
T ss_pred ---CCCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHHHHHhccc-------------------
Confidence 234689999999998888763 355788999999999998888777777777776543
Q ss_pred hhhhcccccccCCCCCCccchheeeecccccCCchhhhhccc---CCce-eeecccccccCccc----------------
Q 010028 286 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL---HHPL-FLTTGETRYKLPER---------------- 345 (520)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l---~~~~-~~~~~~~~~~~~~~---------------- 345 (520)
.++++++|||++... .+..+.. ..+. ++........+...
T Consensus 178 -------------------~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~ 237 (997)
T 4a4z_A 178 -------------------HVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSE 237 (997)
T ss_dssp -------------------TCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCC
T ss_pred -------------------CCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhh
Confidence 457899999986432 2221111 0111 11000000000000
Q ss_pred -------------------------------------------------------------------------cchhhhh
Q 010028 346 -------------------------------------------------------------------------LESYKLI 352 (520)
Q Consensus 346 -------------------------------------------------------------------------~~~~~~~ 352 (520)
...+...
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (997)
T 4a4z_A 238 FLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQD 317 (997)
T ss_dssp BCHHHHHHHHHHHC-----------------------------------------------------------------C
T ss_pred hhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000111
Q ss_pred ccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCC-----------------------------------
Q 010028 353 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL----------------------------------- 397 (520)
Q Consensus 353 ~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~----------------------------------- 397 (520)
.....+...+...+......++||||++++.|+.++..|...+..
T Consensus 318 ~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 397 (997)
T 4a4z_A 318 GPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSL 397 (997)
T ss_dssp CCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHH
Confidence 122344566777777777889999999999999999999764311
Q ss_pred -ceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCC---------CHHHHHHHHhhccc
Q 010028 398 -RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTAR 467 (520)
Q Consensus 398 -~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~---------s~~~~~Q~~GR~~R 467 (520)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+ ..||+++.|. |..+|+||+||+||
T Consensus 398 l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 398 LERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred hhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 125889999999999999999999999999999999999999999 4455555554 99999999999999
Q ss_pred CCC--CCcEEEEE--ecchHHHHHHHHH
Q 010028 468 AGQ--LGRCFTLL--HKDEVKRFKKLLQ 491 (520)
Q Consensus 468 ~~~--~g~~i~~~--~~~~~~~~~~~~~ 491 (520)
.|. .|.|++++ +..+...+++++.
T Consensus 477 ~G~~~~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 477 RGLDSTGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp TTTCSSEEEEEECCSSCCCHHHHHHHHH
T ss_pred CCCCcceEEEEecCCCcchHHHHHHHhc
Confidence 984 57777777 3346667777654
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.6e-36 Score=340.10 Aligned_cols=329 Identities=17% Similarity=0.185 Sum_probs=239.6
Q ss_pred CCHHHHHHH-HHCCCCCcchhhHHHHHhhhCCCCCCC--CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 35 l~~~~~~~l-~~~~~~~~~~~Q~~ai~~~~~~~~~~~--~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
.++...+.+ ..++| .|+++|.+|++.+...+.+++ ++++++|||+|||.+++.+++..+.. +.+++|++||+
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~ 662 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTT 662 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechH
Confidence 455555555 45787 689999999999887554565 89999999999999998888776543 45899999999
Q ss_pred HHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcc
Q 010028 112 DLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 191 (520)
Q Consensus 112 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 191 (520)
+|+.|++++ +..+....++++..+++..+.......+
T Consensus 663 ~La~Q~~~~---------------------------------------~~~~~~~~~i~v~~l~~~~~~~~~~~~~---- 699 (1151)
T 2eyq_A 663 LLAQQHYDN---------------------------------------FRDRFANWPVRIEMISRFRSAKEQTQIL---- 699 (1151)
T ss_dssp HHHHHHHHH---------------------------------------HHHHSTTTTCCEEEESTTSCHHHHHHHH----
T ss_pred HHHHHHHHH---------------------------------------HHHHhhcCCCeEEEEeCCCCHHHHHHHH----
Confidence 999995554 4433344467788887765544432221
Q ss_pred cccccccCCchhHHHhhc-cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccc
Q 010028 192 KLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 270 (520)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~ 270 (520)
..+. ..++|+|+||+.+. +...++++++|||||+|++.. .....+..+..
T Consensus 700 --------------~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiDEaH~~g~-----~~~~~l~~l~~---- 750 (1151)
T 2eyq_A 700 --------------AEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVDEEHRFGV-----RHKERIKAMRA---- 750 (1151)
T ss_dssp --------------HHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEESGGGSCH-----HHHHHHHHHHT----
T ss_pred --------------HHHhcCCCCEEEECHHHHh------CCccccccceEEEechHhcCh-----HHHHHHHHhcC----
Confidence 1122 35899999997652 235678899999999998532 22333333221
Q ss_pred ccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhh
Q 010028 271 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK 350 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 350 (520)
..+++++|||+.+.........+.++..+...+.. ...+..+
T Consensus 751 ----------------------------------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~- 792 (1151)
T 2eyq_A 751 ----------------------------------NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTF- 792 (1151)
T ss_dssp ----------------------------------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEE-
T ss_pred ----------------------------------CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEE-
Confidence 34689999998766555555555444433322211 0111111
Q ss_pred hhccCCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEE
Q 010028 351 LICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 429 (520)
Q Consensus 351 ~~~~~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (520)
.....+......+++.. .+++++|||+++++++.+++.|+.. .++..+..+||+|+..+|+++++.|++|+.+|||
T Consensus 793 --~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~-~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLV 869 (1151)
T 2eyq_A 793 --VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL-VPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 869 (1151)
T ss_dssp --EEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH-CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEE
T ss_pred --EecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 11112222333333433 6789999999999999999999886 2457899999999999999999999999999999
Q ss_pred EecccccCCCCCCCcEEEEccC-CCCHHHHHHHHhhcccCCCCCcEEEEEecc
Q 010028 430 SSDAMTRGMDVEGVNNVVNYDK-PAYIKTYIHRAGRTARAGQLGRCFTLLHKD 481 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~~~~-p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 481 (520)
||+++++|+|+|++++||+++. +.+..+|.||+||+||.|+.|.|++++.+.
T Consensus 870 aT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 870 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp ESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999999999999987 568899999999999999999999998764
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=337.71 Aligned_cols=338 Identities=18% Similarity=0.214 Sum_probs=212.9
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc--cccccEEEEcCCHHHHHhH-Hhhhhcccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQV-NSARCKYCC 126 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~--~~~~~vlil~Pt~~La~q~-~~~~~~~~~ 126 (520)
.|+++|.++++.++. ++++++.+|||+|||++|++|++..+.... ..+.++||++|+++|+.|+ ++++
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l----- 77 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF----- 77 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH-----
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH-----
Confidence 899999999999887 889999999999999999999998776542 1236899999999999996 5553
Q ss_pred cccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHH
Q 010028 127 KNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 206 (520)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (520)
..+... ++++..++|+.....+...
T Consensus 78 ----------------------------------~~~~~~-~~~v~~~~g~~~~~~~~~~-------------------- 102 (699)
T 4gl2_A 78 ----------------------------------QPFLKK-WYRVIGLSGDTQLKISFPE-------------------- 102 (699)
T ss_dssp ----------------------------------HHHHTT-TSCEEEEC----CCCCHHH--------------------
T ss_pred ----------------------------------HHHcCc-CceEEEEeCCcchhhHHHh--------------------
Confidence 333322 4788888888664433222
Q ss_pred hhccCCcEEEeCchHHHHHHhc-----CCCcccccccEEEeehHHHHHHHHhh-hhHHHHHHhh-ccCcccccccccccc
Q 010028 207 ELQSAVDILVATPGRLMDHINA-----TRGFTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLT-RSDNENRFSDASTFL 279 (520)
Q Consensus 207 ~~~~~~~Ili~Tp~~l~~~l~~-----~~~~~~~~~~~lViDEah~l~~~~~~-~~l~~i~~~~-~~~~~~~~~~~~~~~ 279 (520)
+...++|+|+||+.|.+.+.+ ...+.+..+++|||||||++...... ..+..++... ....
T Consensus 103 -~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~----------- 170 (699)
T 4gl2_A 103 -VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNR----------- 170 (699)
T ss_dssp -HHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHH-----------
T ss_pred -hhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccc-----------
Confidence 224679999999999988842 23456788999999999986432222 2222222211 0000
Q ss_pred cccccchhhhcccccccCCCCCCccchheeeecccccCCch--------hhh---hc------------------ccCCc
Q 010028 280 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN--------KLA---QL------------------DLHHP 330 (520)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~--------~~~---~~------------------~l~~~ 330 (520)
.........+..+++++|||+..... .+. .. ....|
T Consensus 171 ---------------~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p 235 (699)
T 4gl2_A 171 ---------------LKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP 235 (699)
T ss_dssp ---------------HHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC
T ss_pred ---------------cccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC
Confidence 00000111133478999999986311 110 00 00111
Q ss_pred eeeec--ccccc---------------------cCcccc-----------------------------------------
Q 010028 331 LFLTT--GETRY---------------------KLPERL----------------------------------------- 346 (520)
Q Consensus 331 ~~~~~--~~~~~---------------------~~~~~~----------------------------------------- 346 (520)
..... ..... ......
T Consensus 236 ~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 236 CKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 10000 00000 000000
Q ss_pred ------------------------------------------------------chhhhhc-cCCCcHHHHHHHHHh---
Q 010028 347 ------------------------------------------------------ESYKLIC-ESKLKPLYLVALLQS--- 368 (520)
Q Consensus 347 ------------------------------------------------------~~~~~~~-~~~~k~~~l~~~~~~--- 368 (520)
....... ....|...+..++..
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 0000000 011233333333333
Q ss_pred -cC-CCcEEEEecCHHHHHHHHHHHhhcC---CCceeEEEeccc--------cCHHHHHHHHHHHHcCCceEEEEecccc
Q 010028 369 -LG-EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIKEYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMT 435 (520)
Q Consensus 369 -~~-~~k~lIf~~s~~~~~~l~~~L~~~~---~~~~~v~~~~~~--------~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (520)
.. ++++||||++++.++.+++.|+... ..++.+..+||+ |+..+|.++++.|++|+.+|||||++++
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~ 475 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE 475 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCC
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Confidence 24 7899999999999999999998751 124788999999 9999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 436 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 436 ~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
+|||+|++++||+||+|+|+..|+||+||+||.| +.++++...
T Consensus 476 ~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~ 518 (699)
T 4gl2_A 476 EGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHS 518 (699)
T ss_dssp TTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEES
T ss_pred cCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeC
Confidence 9999999999999999999999999999976544 334444443
No 38
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2e-36 Score=319.69 Aligned_cols=367 Identities=20% Similarity=0.201 Sum_probs=250.2
Q ss_pred HCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 45 ~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
..|+ .|++.|..++..+.. |+ +..++||+|||++|.+|++.+.+. +..++||+||++||.|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~q-------- 139 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASR-------- 139 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHH--------
T ss_pred HcCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHH--------
Confidence 4799 999999999998775 66 889999999999999999854432 4579999999999999
Q ss_pred cccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhH
Q 010028 125 CCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 204 (520)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (520)
...++..++...++++++++||.+...+...
T Consensus 140 -------------------------------d~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~------------------ 170 (844)
T 1tf5_A 140 -------------------------------DAEQMGKIFEFLGLTVGLNLNSMSKDEKREA------------------ 170 (844)
T ss_dssp -------------------------------HHHHHHHHHHHTTCCEEECCTTSCHHHHHHH------------------
T ss_pred -------------------------------HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHh------------------
Confidence 5555666666678999999999875444322
Q ss_pred HHhhccCCcEEEeCchHH-HHHHhcC-----CCcccccccEEEeehHHHHH-HHH---------------hhhhHHHHHH
Q 010028 205 LQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVDETDRLL-REA---------------YQAWLPTVLQ 262 (520)
Q Consensus 205 ~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~~~~~lViDEah~l~-~~~---------------~~~~l~~i~~ 262 (520)
.+++|+|+||+.| .+.+..+ ....++.+.++|+||||.|+ +.. +...+..++.
T Consensus 171 -----~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~ 245 (844)
T 1tf5_A 171 -----YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVR 245 (844)
T ss_dssp -----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHT
T ss_pred -----cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHH
Confidence 3579999999999 5665442 23557889999999999998 542 5566777777
Q ss_pred hhcc---------Ccccc-----------------cccccccccc---cccc-hhh----------hc----------cc
Q 010028 263 LTRS---------DNENR-----------------FSDASTFLPS---AFGS-LKT----------IR----------RC 292 (520)
Q Consensus 263 ~~~~---------~~~~~-----------------~~~~~~~~~~---~~~~-~~~----------~~----------~~ 292 (520)
.++. .++.. +++.. .+. .... +.. +. .+
T Consensus 246 ~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat--~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~t 323 (844)
T 1tf5_A 246 TLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK--HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFT 323 (844)
T ss_dssp TCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGG--GHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTT
T ss_pred hCcccccceeccccceEEecHHHHHHHHHHhCccccCCCc--cchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeeccc
Confidence 7652 11111 11110 000 0000 000 00 00
Q ss_pred ccc---c--------------CCCCCC-c-------------cchheeeecccccCCchhhhhcccCCceeeeccccccc
Q 010028 293 GVE---R--------------GFKDKP-Y-------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 341 (520)
Q Consensus 293 ~~~---~--------------~~~~~~-~-------------~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~ 341 (520)
+.. + ...-.. . ...++.++|+|.......+...+..+ ++.+......
T Consensus 324 gr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~--vv~IPtn~p~ 401 (844)
T 1tf5_A 324 GRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ--VVTIPTNRPV 401 (844)
T ss_dssp CCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC--EEECCCSSCC
T ss_pred ccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc--eEEecCCCCc
Confidence 000 0 000000 0 01235678888766555555444332 2222222111
Q ss_pred CccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHH
Q 010028 342 LPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 419 (520)
Q Consensus 342 ~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~ 419 (520)
.... ...........|...+...+... .+.++||||+|++.++.++..|...+ +.+..+||++...++..+...
T Consensus 402 ~r~d-~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~a 477 (844)
T 1tf5_A 402 VRDD-RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEA 477 (844)
T ss_dssp CCEE-CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTT
T ss_pred cccc-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHc
Confidence 1111 01122334456777777777542 56689999999999999999999876 888999999988888766655
Q ss_pred HHcCCceEEEEecccccCCCCC--------CCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchH-------H
Q 010028 420 FREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------K 484 (520)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidl~--------~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~-------~ 484 (520)
|+.| .|+|||++++||+|++ ++.+||+++.|.|...|+||+||+||.|.+|.+++|++.+|. +
T Consensus 478 g~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~~~ 555 (844)
T 1tf5_A 478 GQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAE 555 (844)
T ss_dssp TSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHH
T ss_pred CCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHhHH
Confidence 5544 7999999999999999 788999999999999999999999999999999999987652 3
Q ss_pred HHHHHHHHhc
Q 010028 485 RFKKLLQKAD 494 (520)
Q Consensus 485 ~~~~~~~~~~ 494 (520)
.+..+++.+.
T Consensus 556 ~~~~~~~~~~ 565 (844)
T 1tf5_A 556 RTMAMLDRFG 565 (844)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 3455555544
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9.8e-37 Score=319.99 Aligned_cols=311 Identities=18% Similarity=0.199 Sum_probs=220.7
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..|+++|.+|++.++. ++++++++|||+|||++++.++...+.. ...++||++|+++|+.|++
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~vlvl~P~~~L~~Q~~---------- 174 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMA---------- 174 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH---CSSEEEEEESSHHHHHHHH----------
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC---CCCeEEEEECcHHHHHHHH----------
Confidence 3899999999999876 6899999999999999998888776653 2348999999999999954
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
+.+..+....+..+..++|+.+...+ .
T Consensus 175 -----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~------------------------~ 201 (510)
T 2oca_A 175 -----------------------------DDFVDYRLFSHAMIKKIGGGASKDDK------------------------Y 201 (510)
T ss_dssp -----------------------------HHHHHTTSSCGGGEEECGGGCCTTGG------------------------G
T ss_pred -----------------------------HHHHHhhcCCccceEEEecCCccccc------------------------c
Confidence 44455544445677888877654332 2
Q ss_pred ccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhh
Q 010028 209 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 288 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (520)
...++|+|+||+.+.. .....+.++++|||||||++.... ...++..+.
T Consensus 202 ~~~~~I~i~T~~~l~~----~~~~~~~~~~liIiDE~H~~~~~~----~~~il~~~~----------------------- 250 (510)
T 2oca_A 202 KNDAPVVVGTWQTVVK----QPKEWFSQFGMMMNDECHLATGKS----ISSIISGLN----------------------- 250 (510)
T ss_dssp CTTCSEEEEEHHHHTT----SCGGGGGGEEEEEEETGGGCCHHH----HHHHGGGCT-----------------------
T ss_pred ccCCcEEEEeHHHHhh----chhhhhhcCCEEEEECCcCCCccc----HHHHHHhcc-----------------------
Confidence 2467999999997633 233557889999999999976533 333333321
Q ss_pred hcccccccCCCCCCccchheeeecccccCCchhhh-hcccCCceeeecccccc----------------cCc--------
Q 010028 289 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA-QLDLHHPLFLTTGETRY----------------KLP-------- 343 (520)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~-~~~l~~~~~~~~~~~~~----------------~~~-------- 343 (520)
...+++++|||++....... ...+..+.......... ..+
T Consensus 251 ---------------~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 315 (510)
T 2oca_A 251 ---------------NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLK 315 (510)
T ss_dssp ---------------TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHT
T ss_pred ---------------cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhcccc
Confidence 13367999999965543311 11122222222221100 000
Q ss_pred -cccch-hhhhccCCCcHHHHHHHHHhc---CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHH
Q 010028 344 -ERLES-YKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 418 (520)
Q Consensus 344 -~~~~~-~~~~~~~~~k~~~l~~~~~~~---~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~ 418 (520)
..... +........+...+..++... .++++||||+ .+++..+++.|.+.+ ..+..+||+++..+|+++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~ 391 (510)
T 2oca_A 316 GKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKT 391 (510)
T ss_dssp TCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHH
T ss_pred ccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHH
Confidence 01111 112222233444555555544 3445566666 999999999999865 48999999999999999999
Q ss_pred HHHcCCceEEEEe-cccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEe
Q 010028 419 AFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 479 (520)
Q Consensus 419 ~f~~g~~~vLv~T-~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~ 479 (520)
.|++|+.+||||| +++++|+|+|++++||+++.|.|...|.|++||+||.|+.+.++++++
T Consensus 392 ~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 392 LAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999 999999999999999999999999999999999999997774454544
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2e-36 Score=314.47 Aligned_cols=292 Identities=25% Similarity=0.308 Sum_probs=212.3
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.|+++|.++++.+.. ++++++++|||+|||++++.++... +.++||++|+++|+.|+++++
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~-------- 153 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERL-------- 153 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHG--------
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHH--------
Confidence 799999999998776 5779999999999999998877653 457999999999999965553
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccce-EEeccCccchHHHHHHHhhcccccccccCCchhHHHhh
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 208 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (520)
..+ +.+ +..++|+..
T Consensus 154 -------------------------------~~~----~~~~v~~~~g~~~----------------------------- 169 (472)
T 2fwr_A 154 -------------------------------GIF----GEEYVGEFSGRIK----------------------------- 169 (472)
T ss_dssp -------------------------------GGG----CGGGEEEBSSSCB-----------------------------
T ss_pred -------------------------------HhC----CCcceEEECCCcC-----------------------------
Confidence 222 456 777777654
Q ss_pred ccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhh
Q 010028 209 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 288 (520)
Q Consensus 209 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (520)
...+|+|+||+.+...+... ..++++|||||||++.+..+.. +.+.+.
T Consensus 170 -~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~----------------------- 217 (472)
T 2fwr_A 170 -ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI----------------------- 217 (472)
T ss_dssp -CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC-----------------------
T ss_pred -CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC-----------------------
Confidence 34689999999987655421 2458899999999987655432 333221
Q ss_pred hcccccccCCCCCCccchheeeecccccCC-------------------chhhhhcccCCceeeeccc----ccc-----
Q 010028 289 IRRCGVERGFKDKPYPRLVKMVLSATLTQD-------------------PNKLAQLDLHHPLFLTTGE----TRY----- 340 (520)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-------------------~~~~~~~~l~~~~~~~~~~----~~~----- 340 (520)
..+++++|||+... ...+....+..+....... ...
T Consensus 218 ----------------~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 281 (472)
T 2fwr_A 218 ----------------APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEK 281 (472)
T ss_dssp ----------------CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTT
T ss_pred ----------------CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHH
Confidence 23578899998632 1112111222221111100 000
Q ss_pred ----------------cCccccchh---------------------hhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHH
Q 010028 341 ----------------KLPERLESY---------------------KLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 383 (520)
Q Consensus 341 ----------------~~~~~~~~~---------------------~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~ 383 (520)
......... ........|...+..++....++++||||++.+.
T Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~ 361 (472)
T 2fwr_A 282 REKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNEL 361 (472)
T ss_dssp TTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHH
T ss_pred HHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHH
Confidence 000000000 1123344567788888888888999999999999
Q ss_pred HHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHh
Q 010028 384 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 463 (520)
Q Consensus 384 ~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~G 463 (520)
++.+++.|. +..+||+++..+|+++++.|++|+.+|||+|+++++|+|+|++++||+++.|+|...|.||+|
T Consensus 362 ~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~G 433 (472)
T 2fwr_A 362 VYRISKVFL--------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLG 433 (472)
T ss_dssp HHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHh
Confidence 999999874 346899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCC-CcEEE--EEec
Q 010028 464 RTARAGQL-GRCFT--LLHK 480 (520)
Q Consensus 464 R~~R~~~~-g~~i~--~~~~ 480 (520)
|+||.|+. +.+++ ++.+
T Consensus 434 R~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 434 RILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp HSBCCCTTTCCEEEEEEEEC
T ss_pred hccCCCCCCceEEEEEEEeC
Confidence 99999954 44444 4554
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.8e-36 Score=318.32 Aligned_cols=313 Identities=14% Similarity=0.094 Sum_probs=218.6
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
+++.+.+++... ...++|.|+.+++. +.+++++++.||||||||++|++|+++.+.. .+.++||++||++||
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~----l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa 228 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDI----FRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVA 228 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGG----GSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHH----HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHH
Confidence 444444444432 46788888776444 3459999999999999999999999988765 356899999999999
Q ss_pred HhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhccccc
Q 010028 115 LQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 194 (520)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 194 (520)
.|+++.++.+ .+.. .+... .
T Consensus 229 ~Qi~~~l~~~---------------------------------------------~v~~-~~~~l-~------------- 248 (618)
T 2whx_A 229 AEMEEALRGL---------------------------------------------PIRY-QTPAV-K------------- 248 (618)
T ss_dssp HHHHHHTTTS---------------------------------------------CEEE-CCTTS-S-------------
T ss_pred HHHHHHhcCC---------------------------------------------ceeE-ecccc-e-------------
Confidence 9976554211 1111 11000 0
Q ss_pred ccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccccccc
Q 010028 195 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 274 (520)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~ 274 (520)
.....+..+.++|.+.+...+... ..+.++++||+||||++ +..+...+..+...+..
T Consensus 249 -----------~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-------- 306 (618)
T 2whx_A 249 -----------SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-------- 306 (618)
T ss_dssp -----------CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH--------
T ss_pred -----------eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc--------
Confidence 001123357778888876655542 34788999999999997 56666666666665432
Q ss_pred ccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhcc
Q 010028 275 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 354 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
+..|++++|||++.....+.. .++..+..... .+.
T Consensus 307 -----------------------------~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~---~~~---------- 341 (618)
T 2whx_A 307 -----------------------------GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE---IPE---------- 341 (618)
T ss_dssp -----------------------------TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC---CCS----------
T ss_pred -----------------------------cCccEEEEECCCchhhhhhhc---cCCceeeeccc---CCH----------
Confidence 235789999999876554443 22322222211 000
Q ss_pred CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc
Q 010028 355 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 434 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (520)
.+...+...+.+ ..+++||||++++.++.+++.|+..+ ..+..+||. +|.++++.|++|+.+|||||+++
T Consensus 342 --~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g---~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~ 411 (618)
T 2whx_A 342 --RSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDIS 411 (618)
T ss_dssp --SCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTT---CCEEEECTT----THHHHTTHHHHSCCSEEEECGGG
T ss_pred --HHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcC---CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHH
Confidence 000111222222 36799999999999999999999875 789999984 67889999999999999999999
Q ss_pred ccCCCCCCCcEE--------------------EEccCCCCHHHHHHHHhhcccCCC-CCcEEEEEe---cchHHHHHHHH
Q 010028 435 TRGMDVEGVNNV--------------------VNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLH---KDEVKRFKKLL 490 (520)
Q Consensus 435 ~~Gidl~~~~~V--------------------I~~~~p~s~~~~~Q~~GR~~R~~~-~g~~i~~~~---~~~~~~~~~~~ 490 (520)
++|+|+| +++| |+++.|.+..+|+||+||+||.|. .|.+++|+. ..|...++.+.
T Consensus 412 ~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le 490 (618)
T 2whx_A 412 EMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTE 490 (618)
T ss_dssp GTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHH
T ss_pred HcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHH
Confidence 9999998 8888 677779999999999999999975 899999997 66665555555
Q ss_pred HHh
Q 010028 491 QKA 493 (520)
Q Consensus 491 ~~~ 493 (520)
+.+
T Consensus 491 ~~i 493 (618)
T 2whx_A 491 AKM 493 (618)
T ss_dssp HHH
T ss_pred hHh
Confidence 543
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.6e-35 Score=302.98 Aligned_cols=288 Identities=16% Similarity=0.181 Sum_probs=202.3
Q ss_pred CCCCcchhhHHHHHhhhCCCCCCCCE-EEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 47 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 47 ~~~~~~~~Q~~ai~~~~~~~~~~~~~-li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
|+..|++.|+ +++.++. ++++ ++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.++
T Consensus 1 G~~q~~~iq~-~i~~~l~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFR----KKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGS----TTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHh----cCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc---
Confidence 5778999984 6666654 6665 999999999999999999887664 35689999999999999655432
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
+..+....+....
T Consensus 70 ------------------------------------------g~~v~~~~~~~~~------------------------- 82 (451)
T 2jlq_A 70 ------------------------------------------GLPIRYQTPAVKS------------------------- 82 (451)
T ss_dssp ------------------------------------------TSCEEECCTTCSC-------------------------
T ss_pred ------------------------------------------Cceeeeeeccccc-------------------------
Confidence 1112111111000
Q ss_pred HhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccc
Q 010028 206 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 285 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (520)
....+..|.++|++.+...+... ..+.++++||+||||++ +......+..+......
T Consensus 83 -~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~------------------- 139 (451)
T 2jlq_A 83 -DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM------------------- 139 (451)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT-------------------
T ss_pred -cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC-------------------
Confidence 01134578999999987777653 45788999999999976 33222222222221111
Q ss_pred hhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHH
Q 010028 286 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 365 (520)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 365 (520)
+..+++++|||++....... ..++.++.... ..+. ..+ ... ...
T Consensus 140 ------------------~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~~---~~p~--~~~------~~~----~~~ 183 (451)
T 2jlq_A 140 ------------------GEAAAIFMTATPPGSTDPFP---QSNSPIEDIER---EIPE--RSW------NTG----FDW 183 (451)
T ss_dssp ------------------TSCEEEEECSSCTTCCCSSC---CCSSCEEEEEC---CCCS--SCC------SSS----CHH
T ss_pred ------------------CCceEEEEccCCCccchhhh---cCCCceEecCc---cCCc--hhh------HHH----HHH
Confidence 24578999999976444332 22332222211 1110 000 011 122
Q ss_pred HHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcE
Q 010028 366 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 445 (520)
Q Consensus 366 ~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~ 445 (520)
+.. ..+++||||+++++++.+++.|+..+ +.+..+|+.+. .++++.|++|+.+|||||+++++|+|+|+ ++
T Consensus 184 l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~ 254 (451)
T 2jlq_A 184 ITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GR 254 (451)
T ss_dssp HHH-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SE
T ss_pred HHh-CCCCEEEEcCCHHHHHHHHHHHHHcC---CeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CE
Confidence 223 36699999999999999999999765 78889998764 57899999999999999999999999999 99
Q ss_pred EEEcc--------------------CCCCHHHHHHHHhhcccCCC-CCcEEEEEec
Q 010028 446 VVNYD--------------------KPAYIKTYIHRAGRTARAGQ-LGRCFTLLHK 480 (520)
Q Consensus 446 VI~~~--------------------~p~s~~~~~Q~~GR~~R~~~-~g~~i~~~~~ 480 (520)
||+++ .|.|..+|+||+||+||.|+ .|.+++|...
T Consensus 255 VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 255 VIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred EEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99998 99999999999999999998 7888888643
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.9e-36 Score=310.01 Aligned_cols=278 Identities=14% Similarity=0.123 Sum_probs=184.5
Q ss_pred CCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhc
Q 010028 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQF 145 (520)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (520)
+.++++++++||||||||++|++|+++.+... +.+++|++||++||.|+++.++.+
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~--------------------- 60 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL--------------------- 60 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS---------------------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC---------------------
Confidence 44689999999999999999999999877643 468999999999999976654322
Q ss_pred ccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHH---
Q 010028 146 DSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL--- 222 (520)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l--- 222 (520)
+ +....+.. -.++||+.+
T Consensus 61 ----------------------~--v~~~~~~~-----------------------------------~~v~Tp~~l~~~ 81 (440)
T 1yks_A 61 ----------------------D--VKFHTQAF-----------------------------------SAHGSGREVIDA 81 (440)
T ss_dssp ----------------------C--EEEESSCC-----------------------------------CCCCCSSCCEEE
T ss_pred ----------------------C--eEEecccc-----------------------------------eeccCCccceee
Confidence 1 11111100 014444333
Q ss_pred ------HHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhccccccc
Q 010028 223 ------MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 296 (520)
Q Consensus 223 ------~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (520)
...+.. ...+.++++||+||+|++ +..+...+..+......
T Consensus 82 l~~~~l~~~~~~--~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~------------------------------ 128 (440)
T 1yks_A 82 MCHATLTYRMLE--PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA------------------------------ 128 (440)
T ss_dssp EEHHHHHHHHTS--SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT------------------------------
T ss_pred ecccchhHhhhC--cccccCccEEEEECcccc-CcchHHHHHHHHHHhcc------------------------------
Confidence 222222 234788999999999997 33332222222222211
Q ss_pred CCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEE
Q 010028 297 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 376 (520)
Q Consensus 297 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lI 376 (520)
...+++++|||++.....+.... .+... ... . ........ +...+.+ .++++||
T Consensus 129 -------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~-~~~---~-----------~~~~~~~~-~~~~l~~-~~~~~lV 182 (440)
T 1yks_A 129 -------NESATILMTATPPGTSDEFPHSN--GEIED-VQT---D-----------IPSEPWNT-GHDWILA-DKRPTAW 182 (440)
T ss_dssp -------TSCEEEEECSSCTTCCCSSCCCS--SCEEE-EEC---C-----------CCSSCCSS-SCHHHHH-CCSCEEE
T ss_pred -------CCceEEEEeCCCCchhhhhhhcC--CCeeE-eee---c-----------cChHHHHH-HHHHHHh-cCCCEEE
Confidence 23578999999987755444321 11111 000 0 00000000 1112222 3679999
Q ss_pred EecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE--------
Q 010028 377 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------- 448 (520)
Q Consensus 377 f~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~-------- 448 (520)
||++++.++.+++.|+..+ ..+..+|| .+|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 183 F~~s~~~a~~l~~~L~~~~---~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv 254 (440)
T 1yks_A 183 FLPSIRAANVMAASLRKAG---KSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPV 254 (440)
T ss_dssp ECSCHHHHHHHHHHHHHTT---CCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEE
T ss_pred EeCCHHHHHHHHHHHHHcC---CCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceee
Confidence 9999999999999999865 88999999 3577999999999999999999999999999 999986
Q ss_pred -----------ccCCCCHHHHHHHHhhcccC-CCCCcEEEEE---ecchHHHHHHHHHHh
Q 010028 449 -----------YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVKRFKKLLQKA 493 (520)
Q Consensus 449 -----------~~~p~s~~~~~Q~~GR~~R~-~~~g~~i~~~---~~~~~~~~~~~~~~~ 493 (520)
++.|.+..+|+||+||+||. ++.|.|++|+ ++.+...++.+...+
T Consensus 255 ~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 255 LVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88899999999999999998 6789999996 566666666665544
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.1e-34 Score=314.49 Aligned_cols=337 Identities=18% Similarity=0.232 Sum_probs=235.7
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh-hcc
Q 010028 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAV 99 (520)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~-~~~ 99 (520)
...|++++ +++.+.+.+...+ ..|.+.|++++..++. .+++++++||||+|||+ ++|++..... ...
T Consensus 71 ~~~f~~~~------l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~ 138 (773)
T 2xau_A 71 INPFTGRE------FTPKYVDILKIRR-ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTT--QIPQFVLFDEMPHL 138 (773)
T ss_dssp BCTTTCSB------CCHHHHHHHHHHT-TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHH--HHHHHHHHHHCGGG
T ss_pred CCCccccC------CCHHHHHHHHHhh-cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHH--HHHHHHHHhccccC
Confidence 45577777 8999999999877 6999999999988876 46789999999999999 4555422111 111
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++++++|+++|+.|+++.+. ..+ +..+...+|...
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~--------------------------------------~~~----~~~v~~~vG~~i 176 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVA--------------------------------------EEM----DVKLGEEVGYSI 176 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHH--------------------------------------HHT----TCCBTTTEEEEE
T ss_pred CCceEEecCchHHHHHHHHHHHH--------------------------------------HHh----CCchhheeccee
Confidence 25579999999999999644321 111 122222222111
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHH-HHHHH-hhhhH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREA-YQAWL 257 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~~-~~~~l 257 (520)
.... ......+|+++||+++...+... ..+.++++||+||+|. .++.. ....+
T Consensus 177 ~~~~-----------------------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah~R~ld~d~~~~~l 231 (773)
T 2xau_A 177 RFEN-----------------------KTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAHERTLATDILMGLL 231 (773)
T ss_dssp TTEE-----------------------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGGGCCHHHHHHHHHH
T ss_pred cccc-----------------------ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCccccccchHHHHHHH
Confidence 0000 01135689999999998877652 4578899999999995 33322 22334
Q ss_pred HHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccc
Q 010028 258 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 337 (520)
Q Consensus 258 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~ 337 (520)
..+.... +..+++++|||+. ...+.......+. +....
T Consensus 232 ~~l~~~~---------------------------------------~~~~iIl~SAT~~--~~~l~~~~~~~~v-i~v~g 269 (773)
T 2xau_A 232 KQVVKRR---------------------------------------PDLKIIIMSATLD--AEKFQRYFNDAPL-LAVPG 269 (773)
T ss_dssp HHHHHHC---------------------------------------TTCEEEEEESCSC--CHHHHHHTTSCCE-EECCC
T ss_pred HHHHHhC---------------------------------------CCceEEEEecccc--HHHHHHHhcCCCc-ccccC
Confidence 4443321 2347899999984 3444443333333 33322
Q ss_pred ccccCccccchhhhhccCCCcHH----HHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhc--------CCCceeEEEec
Q 010028 338 TRYKLPERLESYKLICESKLKPL----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF--------GELRIKIKEYS 405 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~k~~----~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~--------~~~~~~v~~~~ 405 (520)
... .+..++.......... .+..+.....++++||||+++++++.+++.|+.. ...++.+..+|
T Consensus 270 r~~----pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lh 345 (773)
T 2xau_A 270 RTY----PVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLY 345 (773)
T ss_dssp CCC----CEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_pred ccc----ceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeC
Confidence 221 1223332223333322 2333334446889999999999999999999741 12457899999
Q ss_pred cccCHHHHHHHHHHHH-----cCCceEEEEecccccCCCCCCCcEEEEccC------------------CCCHHHHHHHH
Q 010028 406 GLQRQSVRSKTLKAFR-----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRA 462 (520)
Q Consensus 406 ~~~~~~~r~~~~~~f~-----~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~------------------p~s~~~~~Q~~ 462 (520)
|+++..+|.++++.|+ +|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+
T Consensus 346 g~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~ 425 (773)
T 2xau_A 346 GSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 425 (773)
T ss_dssp TTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHH
T ss_pred CCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhc
Confidence 9999999999999999 999999999999999999999999999887 88999999999
Q ss_pred hhcccCCCCCcEEEEEecchH
Q 010028 463 GRTARAGQLGRCFTLLHKDEV 483 (520)
Q Consensus 463 GR~~R~~~~g~~i~~~~~~~~ 483 (520)
||+||. +.|.|+.|+.+.+.
T Consensus 426 GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 426 GRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HGGGSS-SSEEEEESSCHHHH
T ss_pred cccCCC-CCCEEEEEecHHHh
Confidence 999999 69999999987765
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6e-34 Score=300.24 Aligned_cols=368 Identities=17% Similarity=0.167 Sum_probs=238.2
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|+ .|++.|..++..+.. |+ +..++||+|||+++.+|++.+.+. +..++|++||+.||.|
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~----G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpTreLA~Q--------- 167 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHL----GN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVNDYLAKR--------- 167 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHT----TE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESSHHHHHH---------
T ss_pred cCC-CCCHHHHHHHHhHhc----CC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHH---------
Confidence 688 999999999998765 66 899999999999999999765543 3479999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
...++..+....++++++++|+.+...+...
T Consensus 168 ------------------------------dae~m~~l~~~lGLsv~~i~gg~~~~~r~~~------------------- 198 (922)
T 1nkt_A 168 ------------------------------DSEWMGRVHRFLGLQVGVILATMTPDERRVA------------------- 198 (922)
T ss_dssp ------------------------------HHHHHHHHHHHTTCCEEECCTTCCHHHHHHH-------------------
T ss_pred ------------------------------HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHh-------------------
Confidence 5555666666678999999999875443222
Q ss_pred HhhccCCcEEEeCchHH-HHHHhcCC-----CcccccccEEEeehHHHHH-H---------------HHhhhhHHHHHHh
Q 010028 206 QELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLL-R---------------EAYQAWLPTVLQL 263 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~~lViDEah~l~-~---------------~~~~~~l~~i~~~ 263 (520)
.+++|+++||+.| .+.+..+- ...+..+.++|+||||.|+ + .++...+..++..
T Consensus 199 ----y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~ 274 (922)
T 1nkt_A 199 ----YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPL 274 (922)
T ss_dssp ----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ----cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHh
Confidence 2579999999999 67776531 3557789999999999998 3 3466778888887
Q ss_pred hccC--------ccccc-cc----------ccccccccccc--hhhhcc-------cccc-------------cCCCCCC
Q 010028 264 TRSD--------NENRF-SD----------ASTFLPSAFGS--LKTIRR-------CGVE-------------RGFKDKP 302 (520)
Q Consensus 264 ~~~~--------~~~~~-~~----------~~~~~~~~~~~--~~~~~~-------~~~~-------------~~~~~~~ 302 (520)
+... ..... .. ....+.+.-.. ...+.. .... ..+..+.
T Consensus 275 L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~ 354 (922)
T 1nkt_A 275 MEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRV 354 (922)
T ss_dssp SCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCB
T ss_pred CcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcc
Confidence 7521 00000 00 00000000000 000000 0000 0000000
Q ss_pred cc----------------chhe-----ee-----------------ecccccCCchhhhhcccCCceeeecccccccCcc
Q 010028 303 YP----------------RLVK-----MV-----------------LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 344 (520)
Q Consensus 303 ~~----------------~~~~-----i~-----------------~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 344 (520)
.+ .+.+ .+ ||+|.......+... ++..++.+....+....
T Consensus 355 m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i--Y~l~vv~IPtn~p~~R~ 432 (922)
T 1nkt_A 355 LIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI--YKLGVVSIPTNMPMIRE 432 (922)
T ss_dssp CTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH--HCCEEEECCCSSCCCCE
T ss_pred cCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH--hCCCeEEeCCCCCcccc
Confidence 00 0000 00 011111000011110 01111111111110000
Q ss_pred ccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHc
Q 010028 345 RLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422 (520)
Q Consensus 345 ~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 422 (520)
. ....+......|...+...+... .+.++||||+|++.++.+++.|+..+ +.+..+||.+...++..+...|+.
T Consensus 433 d-~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~ 508 (922)
T 1nkt_A 433 D-QSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRR 508 (922)
T ss_dssp E-CCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTST
T ss_pred c-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCC
Confidence 0 00112233445777777766543 56689999999999999999999876 888999999988787777777776
Q ss_pred CCceEEEEecccccCCCCCCC----------------------------------------------------cEEEEcc
Q 010028 423 GKIQVLVSSDAMTRGMDVEGV----------------------------------------------------NNVVNYD 450 (520)
Q Consensus 423 g~~~vLv~T~~~~~Gidl~~~----------------------------------------------------~~VI~~~ 450 (520)
| .|+|||++++||+|++.. .+||+++
T Consensus 509 G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te 586 (922)
T 1nkt_A 509 G--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTE 586 (922)
T ss_dssp T--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECS
T ss_pred C--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEecc
Confidence 6 699999999999999964 4999999
Q ss_pred CCCCHHHHHHHHhhcccCCCCCcEEEEEecchH-------HHHHHHHHHhc
Q 010028 451 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 494 (520)
Q Consensus 451 ~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~-------~~~~~~~~~~~ 494 (520)
.|.|...|.||+||+||.|.+|.+++|++..|. +++.++++.+.
T Consensus 587 ~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 587 RHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLN 637 (922)
T ss_dssp CCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhC
Confidence 999999999999999999999999999987653 23556665554
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.3e-34 Score=303.23 Aligned_cols=344 Identities=17% Similarity=0.145 Sum_probs=218.6
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|. .|++.|..++..+.. |+ +..++||+|||++|.+|++.+... +.+++|++||++||.|
T Consensus 71 lg~-~p~~VQ~~~i~~ll~----G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q--------- 130 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNE----RC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQR--------- 130 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHS----SE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHH---------
T ss_pred cCC-CCChHHHhhcccccC----Ce--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHH---------
Confidence 465 999999999998765 66 899999999999999999865543 4579999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
....+..+....++++.+++||.+...+.
T Consensus 131 ------------------------------~~e~~~~l~~~lgl~v~~i~GG~~~~~r~--------------------- 159 (853)
T 2fsf_A 131 ------------------------------DAENNRPLFEFLGLTVGINLPGMPAPAKR--------------------- 159 (853)
T ss_dssp ------------------------------HHHHHHHHHHHTTCCEEECCTTCCHHHHH---------------------
T ss_pred ------------------------------HHHHHHHHHHhcCCeEEEEeCCCCHHHHH---------------------
Confidence 55556666666789999999998754332
Q ss_pred HhhccCCcEEEeCchHH-HHHHhcCC-----CcccccccEEEeehHHHHH-HH---------------HhhhhHHHHHHh
Q 010028 206 QELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLL-RE---------------AYQAWLPTVLQL 263 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~~lViDEah~l~-~~---------------~~~~~l~~i~~~ 263 (520)
...+++|+||||+.| .+.+..+- ...++.+.++|+||||.|+ +. ++...+..++..
T Consensus 160 --~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~ 237 (853)
T 2fsf_A 160 --EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPH 237 (853)
T ss_dssp --HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-----------------
T ss_pred --HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHh
Confidence 123579999999999 67776532 2456889999999999988 33 234455666665
Q ss_pred hccCcc---------cccc----cccccccccccchhhhcccccccCCCCCCccchh-----eeeecccccCCchh----
Q 010028 264 TRSDNE---------NRFS----DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV-----KMVLSATLTQDPNK---- 321 (520)
Q Consensus 264 ~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~SaT~~~~~~~---- 321 (520)
++.... ..|. .....+.+ .+...+. ....... --++|||.+.....
T Consensus 238 L~~~~~~~~~~~~~~~dy~vdek~rqv~lte--~g~~~~e----------~~l~~~~l~~~~~~Lfsat~~~~~~~i~~a 305 (853)
T 2fsf_A 238 LIRQEKEDSETFQGEGHFSVDEKSRQVNLTE--RGLVLIE----------ELLVKEGIMDEGESLYSPANIMLMHHVTAA 305 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhccccccccccccceeccccceEEEcH--HHHHHHH----------HHHHhCCcccccccccCcccchHHHHHHHH
Confidence 542100 0000 00000000 0000000 0000000 01344443211000
Q ss_pred --------------------------------------------------------------------------------
Q 010028 322 -------------------------------------------------------------------------------- 321 (520)
Q Consensus 322 -------------------------------------------------------------------------------- 321 (520)
T Consensus 306 l~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGT 385 (853)
T 2fsf_A 306 LRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGT 385 (853)
T ss_dssp ---------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECT
T ss_pred HHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCC
Confidence
Q ss_pred -------hhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHh
Q 010028 322 -------LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLN 392 (520)
Q Consensus 322 -------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~ 392 (520)
+.+.+ +..++.+....+..... ....+......|...+...+... .+.++||||+|+..++.+++.|+
T Consensus 386 a~te~~ef~~iY--~l~vv~IPtn~p~~R~d-~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 386 ADTEAFEFSSIY--KLDTVVVPTNRPMIRKD-LPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp TCCCHHHHHHHH--CCEEEECCCSSCCCCEE-CCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHh--CCcEEEcCCCCCceeec-CCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 00000 00111111100000000 00112234456777788777553 56789999999999999999999
Q ss_pred hcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCC-----------------------------
Q 010028 393 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV----------------------------- 443 (520)
Q Consensus 393 ~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~----------------------------- 443 (520)
..+ +.+..+||.+...++..+...|+.| .|+|||++++||+|++..
T Consensus 463 ~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 463 KAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 876 8889999999888888888888877 699999999999999963
Q ss_pred --------cEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecch
Q 010028 444 --------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 482 (520)
Q Consensus 444 --------~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 482 (520)
.+||+++.|.|...|.||+||+||.|.+|.+++|++..|
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998765
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2e-34 Score=306.97 Aligned_cols=308 Identities=14% Similarity=0.151 Sum_probs=204.3
Q ss_pred HHHCCCC-----CcchhhH-----HHHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 43 LQNMGIS-----SLFPVQV-----AVWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 43 l~~~~~~-----~~~~~Q~-----~ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
+..+||. .|++.|+ ++|+.++. .+..+++++++||||||||++|++++++.+.. .+.+++|++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaPT 279 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAPT 279 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEESS
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEccH
Confidence 3445666 8999999 77665441 11268999999999999999999999987664 35689999999
Q ss_pred HHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhc
Q 010028 111 RDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 190 (520)
Q Consensus 111 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 190 (520)
++||.|+++.++++ ++. ...+...
T Consensus 280 r~La~Q~~~~l~~~-------------------------------------------~i~--~~~~~l~----------- 303 (673)
T 2wv9_A 280 RVVAAEMAEALRGL-------------------------------------------PVR--YLTPAVQ----------- 303 (673)
T ss_dssp HHHHHHHHHHTTTS-------------------------------------------CCE--ECCC--------------
T ss_pred HHHHHHHHHHHhcC-------------------------------------------Cee--eeccccc-----------
Confidence 99999976664332 111 1000000
Q ss_pred ccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCccc
Q 010028 191 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 270 (520)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~ 270 (520)
.....+.-+-+.+...+...+... ..+.++++||+||||++ +..+...+..+......
T Consensus 304 ---------------~v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~---- 361 (673)
T 2wv9_A 304 ---------------REHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA---- 361 (673)
T ss_dssp ---------------CCCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT----
T ss_pred ---------------ccCCHHHHHHHHHhhhhHHHHhcc--cccccceEEEEeCCccc-CccHHHHHHHHHHhccc----
Confidence 000011234444555554444432 45788999999999987 22211122222222111
Q ss_pred ccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhh
Q 010028 271 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK 350 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 350 (520)
...+++++|||++..+..+... ..+... .... .
T Consensus 362 ---------------------------------~~~~vl~~SAT~~~~i~~~~~~--~~~i~~-v~~~---~-------- 394 (673)
T 2wv9_A 362 ---------------------------------GEAAAIFMTATPPGTSDPFPDT--NSPVHD-VSSE---I-------- 394 (673)
T ss_dssp ---------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEE-EECC---C--------
T ss_pred ---------------------------------cCCcEEEEcCCCChhhhhhccc--CCceEE-Eeee---c--------
Confidence 2347899999998765544332 112111 1000 0
Q ss_pred hhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEE
Q 010028 351 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 430 (520)
Q Consensus 351 ~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (520)
...... .+...+.. .++++||||++++.++.+++.|+..+ +.+..+||. +|.++++.|++|+.+||||
T Consensus 395 ---~~~~~~-~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g---~~v~~lHg~----eR~~v~~~F~~g~~~VLVa 462 (673)
T 2wv9_A 395 ---PDRAWS-SGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAG---KRVIQLNRK----SYDTEYPKCKNGDWDFVIT 462 (673)
T ss_dssp ---CSSCCS-SCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEECSS----SHHHHGGGGGTCCCSEEEE
T ss_pred ---CHHHHH-HHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCC---CeEEEeChH----HHHHHHHHHHCCCceEEEE
Confidence 000000 01112222 47799999999999999999999764 889999994 7889999999999999999
Q ss_pred ecccccCCCCCCCcEEEE--------------------ccCCCCHHHHHHHHhhcccC-CCCCcEEEEE---ecchHHHH
Q 010028 431 SDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVKRF 486 (520)
Q Consensus 431 T~~~~~Gidl~~~~~VI~--------------------~~~p~s~~~~~Q~~GR~~R~-~~~g~~i~~~---~~~~~~~~ 486 (520)
|+++++|+|+| +++||+ ++.|.+..+|+||+||+||. ++.|.|++|+ .+.+...+
T Consensus 463 Tdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l 541 (673)
T 2wv9_A 463 TDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLA 541 (673)
T ss_dssp CGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBH
T ss_pred CchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHH
Confidence 99999999999 999997 56899999999999999999 6889999996 45665444
Q ss_pred HHHHH
Q 010028 487 KKLLQ 491 (520)
Q Consensus 487 ~~~~~ 491 (520)
+.+..
T Consensus 542 ~~ie~ 546 (673)
T 2wv9_A 542 HWTEA 546 (673)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.3e-33 Score=288.92 Aligned_cols=283 Identities=18% Similarity=0.235 Sum_probs=193.6
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhccc
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDS 147 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (520)
.++++++++|||||||++|++|+++.+.. .+.++||++||++|+.|+++.++
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------------------------- 71 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALR------------------------- 71 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTT-------------------------
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhc-------------------------
Confidence 57899999999999999999999988764 35689999999999999655532
Q ss_pred chhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHh
Q 010028 148 LLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 227 (520)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~ 227 (520)
+..+....+.... ....+..+.++|.+.+...+.
T Consensus 72 --------------------g~~v~~~~~~~~~--------------------------~~t~~~~i~~~~~~~l~~~l~ 105 (459)
T 2z83_A 72 --------------------GLPVRYQTSAVQR--------------------------EHQGNEIVDVMCHATLTHRLM 105 (459)
T ss_dssp --------------------TSCEEECC----------------------------------CCCSEEEEEHHHHHHHHH
T ss_pred --------------------CceEeEEeccccc--------------------------CCCCCcEEEEEchHHHHHHhh
Confidence 1122211111100 001233577888888766665
Q ss_pred cCCCcccccccEEEeehHHH-----HHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCC
Q 010028 228 ATRGFTLEHLCYLVVDETDR-----LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 302 (520)
Q Consensus 228 ~~~~~~~~~~~~lViDEah~-----l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (520)
.. ..+.++++||+||||+ +...++.. .... .
T Consensus 106 ~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~---~~~~---~------------------------------------ 141 (459)
T 2z83_A 106 SP--NRVPNYNLFVMDEAHFTDPASIAARGYIA---TKVE---L------------------------------------ 141 (459)
T ss_dssp SC--C-CCCCSEEEESSTTCCSHHHHHHHHHHH---HHHH---T------------------------------------
T ss_pred cc--ccccCCcEEEEECCccCCchhhHHHHHHH---HHhc---c------------------------------------
Confidence 42 4578899999999997 33333211 1111 0
Q ss_pred ccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHH
Q 010028 303 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 382 (520)
Q Consensus 303 ~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~ 382 (520)
+..+++++|||++.....+... ..|...... ..+.. ...... ..+... ++++||||++++
T Consensus 142 -~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~----~~~~~--------~~~~~~----~~l~~~-~~~~LVF~~s~~ 201 (459)
T 2z83_A 142 -GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD----EIPDR--------AWSSGY----EWITEY-AGKTVWFVASVK 201 (459)
T ss_dssp -TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC----CCCSS--------CCSSCC----HHHHHC-CSCEEEECSCHH
T ss_pred -CCccEEEEEcCCCcchhhhccC--CCCeEEecc----cCCcc--------hhHHHH----HHHHhc-CCCEEEEeCChH
Confidence 2457899999998765544332 233322110 00000 001111 222333 679999999999
Q ss_pred HHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEE--------------
Q 010028 383 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------- 448 (520)
Q Consensus 383 ~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~-------------- 448 (520)
.++.+++.|+..+ ..+..+|+. +|.++++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 202 ~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~ 273 (459)
T 2z83_A 202 MGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGE 273 (459)
T ss_dssp HHHHHHHHHHHTT---CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSS
T ss_pred HHHHHHHHHHhcC---CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccc
Confidence 9999999999865 788999985 5778999999999999999999999999999 99998
Q ss_pred ------ccCCCCHHHHHHHHhhcccCCC-CCcEEEEEecc-----hHHHHHHHHHHhcCC
Q 010028 449 ------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKD-----EVKRFKKLLQKADND 496 (520)
Q Consensus 449 ------~~~p~s~~~~~Q~~GR~~R~~~-~g~~i~~~~~~-----~~~~~~~~~~~~~~~ 496 (520)
++.|.|..+|+||+||+||.|+ .|.+++|+... ....+......+.+.
T Consensus 274 ~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 333 (459)
T 2z83_A 274 GRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHWTEAKIMLDNI 333 (459)
T ss_dssp CEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTS
T ss_pred cccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhhhhHHHHHhcC
Confidence 6799999999999999999997 89999998764 234444444444433
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.6e-33 Score=297.71 Aligned_cols=317 Identities=16% Similarity=0.155 Sum_probs=186.3
Q ss_pred CCcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhHHHHHHHHhhhc------cccccEEEEcCCHHHHHhHH-hh
Q 010028 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVN-SA 120 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ll~il~~l~~~~------~~~~~vlil~Pt~~La~q~~-~~ 120 (520)
..|+++|.+|++.++..+..+ +++++++|||+|||++++. ++..+.... ..+.++|||+|+++|+.|++ +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 379999999999887655445 5689999999999999654 555554432 15678999999999999965 44
Q ss_pred hhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCC
Q 010028 121 RCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 200 (520)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 200 (520)
++.+ + ..+..+.++
T Consensus 256 ~~~~---------------------------------------~----~~~~~~~~~----------------------- 269 (590)
T 3h1t_A 256 FTPF---------------------------------------G----DARHKIEGG----------------------- 269 (590)
T ss_dssp CTTT---------------------------------------C----SSEEECCC------------------------
T ss_pred HHhc---------------------------------------c----hhhhhhhcc-----------------------
Confidence 3222 1 122222221
Q ss_pred chhHHHhhccCCcEEEeCchHHHHHHhcC---CCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccc
Q 010028 201 PEDVLQELQSAVDILVATPGRLMDHINAT---RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 277 (520)
Q Consensus 201 ~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~---~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 277 (520)
......+|+|+||+.|....... ..+....+++||+||||++.... ......+++.+..
T Consensus 270 ------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~----------- 331 (590)
T 3h1t_A 270 ------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEP----------- 331 (590)
T ss_dssp -------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTT-----------
T ss_pred ------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCCc-----------
Confidence 12245699999999997765421 12445678999999999986532 1334455554331
Q ss_pred cccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCce------------------eeeccccc
Q 010028 278 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL------------------FLTTGETR 339 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~------------------~~~~~~~~ 339 (520)
.+++++|||+..............+. +.......
T Consensus 332 ----------------------------~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 383 (590)
T 3h1t_A 332 ----------------------------AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEV 383 (590)
T ss_dssp ----------------------------SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETT
T ss_pred ----------------------------ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeee
Confidence 25799999987543221111111111 11110000
Q ss_pred c----cC--------ccccch-------hhhhccCCCcHHH----HHHHHHh-cCCCcEEEEecCHHHHHHHHHHHhhcC
Q 010028 340 Y----KL--------PERLES-------YKLICESKLKPLY----LVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFG 395 (520)
Q Consensus 340 ~----~~--------~~~~~~-------~~~~~~~~~k~~~----l~~~~~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~ 395 (520)
. .. ...+.. +........+... +...+.. ...+++||||+++.+|+.+++.|+..+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~ 463 (590)
T 3h1t_A 384 DAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLN 463 (590)
T ss_dssp CC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred eccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhh
Confidence 0 00 000000 0000000011122 2222333 245899999999999999999998753
Q ss_pred C-----CceeEEEeccccCHHHHHHHHHHHHcCCce---EEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhccc
Q 010028 396 E-----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 467 (520)
Q Consensus 396 ~-----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R 467 (520)
. ....+..+||.++. +|+++++.|++|+.+ |||+|+++++|+|+|++++||+++.|.|...|+||+||++|
T Consensus 464 ~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R 542 (590)
T 3h1t_A 464 SDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTR 542 (590)
T ss_dssp HHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCC
T ss_pred hhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcc
Confidence 1 12237789998754 799999999998766 88899999999999999999999999999999999999999
Q ss_pred CCC--CCcEEEEEe
Q 010028 468 AGQ--LGRCFTLLH 479 (520)
Q Consensus 468 ~~~--~g~~i~~~~ 479 (520)
.+. .+..+++++
T Consensus 543 ~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 543 LREDYGKLWFNIID 556 (590)
T ss_dssp CBGGGTBSCEEEEE
T ss_pred cCccCCCCEEEEEe
Confidence 875 333444444
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=8.8e-33 Score=282.25 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=184.0
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSL 148 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (520)
++++++++|||||||++|++++++.+.. .+.+++|++||++|+.|+++.+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~--------------------------- 51 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEAL--------------------------- 51 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHT---------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHh---------------------------
Confidence 6899999999999999999999976654 3468999999999999954442
Q ss_pred hhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhc
Q 010028 149 LFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 228 (520)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~ 228 (520)
. +..+....|+... ....+..+.+.|.+.+...+..
T Consensus 52 ------------~------~~~v~~~~~~~~~--------------------------~~~~~~~~~~~~~~~l~~~l~~ 87 (431)
T 2v6i_A 52 ------------R------GEPIRYMTPAVQS--------------------------ERTGNEIVDFMCHSTFTMKLLQ 87 (431)
T ss_dssp ------------T------TSCEEEC-----------------------------------CCCSEEEEEHHHHHHHHHH
T ss_pred ------------C------CCeEEEEecCccc--------------------------cCCCCceEEEEchHHHHHHHhc
Confidence 1 2344444443110 0012335667788877665554
Q ss_pred CCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchhe
Q 010028 229 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 308 (520)
Q Consensus 229 ~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (520)
...+.++++||+||+|++ +..+......+...... +..++
T Consensus 88 --~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~~ 127 (431)
T 2v6i_A 88 --GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM-------------------------------------GDAGA 127 (431)
T ss_dssp --TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEE
T ss_pred --CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-------------------------------------CCCcE
Confidence 245788999999999986 33332223333322111 24578
Q ss_pred eeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHH
Q 010028 309 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 388 (520)
Q Consensus 309 i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~ 388 (520)
+++|||++.....+... ..|.. ..... .+ ..+...+...+.. .++++||||+++++++.++
T Consensus 128 l~~SAT~~~~~~~~~~~--~~~i~-~~~~~---~~------------~~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~ 188 (431)
T 2v6i_A 128 IFMTATPPGTTEAFPPS--NSPII-DEETR---IP------------DKAWNSGYEWITE-FDGRTVWFVHSIKQGAEIG 188 (431)
T ss_dssp EEEESSCTTCCCSSCCC--SSCCE-EEECC---CC------------SSCCSSCCHHHHS-CSSCEEEECSSHHHHHHHH
T ss_pred EEEeCCCCcchhhhcCC--CCcee-ecccc---CC------------HHHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHH
Confidence 99999998765443321 11211 11000 00 0011111223333 3668999999999999999
Q ss_pred HHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcE-----------------EEEccC
Q 010028 389 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN-----------------VVNYDK 451 (520)
Q Consensus 389 ~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~-----------------VI~~~~ 451 (520)
+.|+..+ ..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.. ||+++.
T Consensus 189 ~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~ 260 (431)
T 2v6i_A 189 TCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPI 260 (431)
T ss_dssp HHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEE
T ss_pred HHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccc
Confidence 9999864 789999987 577899999999999999999999999999 544 577889
Q ss_pred CCCHHHHHHHHhhcccCCC-CCcEEEEE
Q 010028 452 PAYIKTYIHRAGRTARAGQ-LGRCFTLL 478 (520)
Q Consensus 452 p~s~~~~~Q~~GR~~R~~~-~g~~i~~~ 478 (520)
|.+..+|.||+||+||.|. .|.+++|.
T Consensus 261 p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 261 AITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999999985 45555554
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.5e-33 Score=295.61 Aligned_cols=281 Identities=19% Similarity=0.259 Sum_probs=196.7
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.++++|.+ +...+..+++++++||||||||.++.+++++ .+.+++|++||++||.|+++.+.+
T Consensus 217 P~~~~q~~----i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~------ 279 (666)
T 3o8b_A 217 PVFTDNSS----PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSK------ 279 (666)
T ss_dssp CSCCCCCS----CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHH------
T ss_pred CcHHHHHH----HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHH------
Confidence 34445543 3444446789999999999999999888875 345899999999999996443211
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
. .+..+...+|+.. ..
T Consensus 280 --------------------------------~----~g~~vg~~vG~~~----------------------------~~ 295 (666)
T 3o8b_A 280 --------------------------------A----HGIDPNIRTGVRT----------------------------IT 295 (666)
T ss_dssp --------------------------------H----HSCCCEEECSSCE----------------------------EC
T ss_pred --------------------------------H----hCCCeeEEECcEe----------------------------cc
Confidence 1 1334455555533 22
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhh
Q 010028 210 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 289 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (520)
.+++|+|+||++|+ .. ..+.++++++||+||||++ +..+...+..+++.+....
T Consensus 296 ~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~--------------------- 349 (666)
T 3o8b_A 296 TGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAG--------------------- 349 (666)
T ss_dssp CCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTT---------------------
T ss_pred CCCCEEEECcHHHH---hC-CCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcC---------------------
Confidence 46799999999973 33 4567888999999999764 5666666777777654321
Q ss_pred cccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc
Q 010028 290 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 369 (520)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~ 369 (520)
...++++|||++..+.. ..+........ ....+.... .... +...
T Consensus 350 ---------------~~llil~SAT~~~~i~~------~~p~i~~v~~~---~~~~i~~~~----~~~~-------l~~~ 394 (666)
T 3o8b_A 350 ---------------ARLVVLATATPPGSVTV------PHPNIEEVALS---NTGEIPFYG----KAIP-------IEAI 394 (666)
T ss_dssp ---------------CSEEEEEESSCTTCCCC------CCTTEEEEECB---SCSSEEETT----EEEC-------GGGS
T ss_pred ---------------CceEEEECCCCCccccc------CCcceEEEeec---ccchhHHHH----hhhh-------hhhc
Confidence 11257779999764321 11111111000 000011000 0000 1233
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEE--
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV-- 447 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI-- 447 (520)
.++++||||++++.++.+++.|+..+ +.+..+||+++..+ |.++..+|||||+++++|||+| +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g---~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLG---INAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCC---CcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEec
Confidence 67899999999999999999999765 88999999998864 4566779999999999999998 99988
Q ss_pred --------Ecc-----------CCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHH
Q 010028 448 --------NYD-----------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 485 (520)
Q Consensus 448 --------~~~-----------~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 485 (520)
+|| .|.+..+|+||+||+|| |+.|. +.|+.+.+...
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 566 89999999999999999 88999 89988766543
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.9e-32 Score=304.85 Aligned_cols=124 Identities=20% Similarity=0.209 Sum_probs=112.9
Q ss_pred CCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC--ceEEEEec
Q 010028 355 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSD 432 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~ 432 (520)
...|...+..++....++++||||++..++..++..|... .++.+..+||+|+..+|.++++.|++|+ .+|||||+
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 4457888888888888999999999999999999999852 2488999999999999999999999998 99999999
Q ss_pred ccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEec
Q 010028 433 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 480 (520)
Q Consensus 433 ~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 480 (520)
++++|+|+|++++||++++|+++..|.|++||++|.|+.|.|+++...
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 999999999999999999999999999999999999998876666443
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=4.5e-31 Score=280.28 Aligned_cols=283 Identities=16% Similarity=0.161 Sum_probs=195.7
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhccc
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDS 147 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (520)
.+++++++||||||||.. +++.+... .+.+|++|+++||.|+++.
T Consensus 154 ~rk~vlv~apTGSGKT~~----al~~l~~~----~~gl~l~PtR~LA~Qi~~~--------------------------- 198 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYH----AIQKYFSA----KSGVYCGPLKLLAHEIFEK--------------------------- 198 (677)
T ss_dssp CCEEEEEECCTTSSHHHH----HHHHHHHS----SSEEEEESSHHHHHHHHHH---------------------------
T ss_pred CCCEEEEEcCCCCCHHHH----HHHHHHhc----CCeEEEeCHHHHHHHHHHH---------------------------
Confidence 478999999999999983 34444332 2459999999999995554
Q ss_pred chhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHh
Q 010028 148 LLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 227 (520)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~ 227 (520)
+... ++.+..++|+...... .-.+..+++++|++.+.
T Consensus 199 ------------l~~~----g~~v~lltG~~~~iv~-----------------------TpGr~~~il~~T~e~~~---- 235 (677)
T 3rc3_A 199 ------------SNAA----GVPCDLVTGEERVTVQ-----------------------PNGKQASHVSCTVEMCS---- 235 (677)
T ss_dssp ------------HHHT----TCCEEEECSSCEECCS-----------------------TTCCCCSEEEEEGGGCC----
T ss_pred ------------HHhc----CCcEEEEECCeeEEec-----------------------CCCcccceeEecHhHhh----
Confidence 3322 6678888887552000 00123678888876541
Q ss_pred cCCCcccccccEEEeehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchh
Q 010028 228 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 307 (520)
Q Consensus 228 ~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (520)
....++++||||+|++.+.+++..+..++..+.. ...+
T Consensus 236 -----l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~-------------------------------------~~i~ 273 (677)
T 3rc3_A 236 -----VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA-------------------------------------EEVH 273 (677)
T ss_dssp -----SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE-------------------------------------EEEE
T ss_pred -----hcccCCEEEEecceecCCccchHHHHHHHHccCc-------------------------------------cceE
Confidence 2356799999999999877777777777666542 2457
Q ss_pred eeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHH
Q 010028 308 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 387 (520)
Q Consensus 308 ~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l 387 (520)
++++|||.. ....+.... .....+..... ..+...... ... .+... .+..+|||++++.++.+
T Consensus 274 il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r--~~~l~~~~~-----~l~-------~l~~~-~~g~iIf~~s~~~ie~l 336 (677)
T 3rc3_A 274 LCGEPAAID-LVMELMYTT-GEEVEVRDYKR--LTPISVLDH-----ALE-------SLDNL-RPGDCIVCFSKNDIYSV 336 (677)
T ss_dssp EEECGGGHH-HHHHHHHHH-TCCEEEEECCC--SSCEEECSS-----CCC-------SGGGC-CTTEEEECSSHHHHHHH
T ss_pred EEeccchHH-HHHHHHHhc-CCceEEEEeee--cchHHHHHH-----HHH-------HHHhc-CCCCEEEEcCHHHHHHH
Confidence 889999952 222222221 11111111100 011110000 000 01122 33458899999999999
Q ss_pred HHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHc--CCceEEEEecccccCCCCCCCcEEEEccC--------------
Q 010028 388 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQVLVSSDAMTRGMDVEGVNNVVNYDK-------------- 451 (520)
Q Consensus 388 ~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidl~~~~~VI~~~~-------------- 451 (520)
++.|+..+ ..+..+||+|+..+|.++++.|++ |+.+|||||+++++|+|+ ++++||+++.
T Consensus 337 a~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~ 412 (677)
T 3rc3_A 337 SRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELE 412 (677)
T ss_dssp HHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------C
T ss_pred HHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccc
Confidence 99999865 789999999999999999999999 889999999999999999 7999999998
Q ss_pred CCCHHHHHHHHhhcccCCCC---CcEEEEEecchHHHHHHHHHH
Q 010028 452 PAYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRFKKLLQK 492 (520)
Q Consensus 452 p~s~~~~~Q~~GR~~R~~~~---g~~i~~~~~~~~~~~~~~~~~ 492 (520)
|.|..+|.||+||+||.|.. |.| +++...+.+.+++++..
T Consensus 413 p~s~~~~~QR~GRAGR~g~~g~~G~v-~~l~~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 413 PITTSQALQIAGRAGRFSSRFKEGEV-TTMNHEDLSLLKEILKR 455 (677)
T ss_dssp BCCHHHHHHHHTTBTCTTSSCSSEEE-EESSTTHHHHHHHHHHS
T ss_pred cCCHHHHHHHhcCCCCCCCCCCCEEE-EEEecchHHHHHHHHhc
Confidence 77899999999999999965 444 34445566677776553
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=1.7e-30 Score=245.22 Aligned_cols=214 Identities=28% Similarity=0.409 Sum_probs=178.2
Q ss_pred cCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..|....+|++++ +++.+.+.+.++||..|+++|.++++.+.. ++++++++|||+|||++|++|++..+.
T Consensus 23 ~~p~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 23 NCPKPVLNFYEAN------FPANVMDVIARQNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CCCCCCSSTTTTT------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 3567788899998 999999999999999999999999998876 899999999999999999999999887
Q ss_pred hhc----cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceE
Q 010028 96 NRA----VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 171 (520)
Q Consensus 96 ~~~----~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (520)
... ..++++||++||++|+.| +.+.+..+....++++
T Consensus 93 ~~~~~~~~~~~~~lil~Pt~~L~~Q---------------------------------------~~~~~~~~~~~~~~~~ 133 (242)
T 3fe2_A 93 HQPFLERGDGPICLVLAPTRELAQQ---------------------------------------VQQVAAEYCRACRLKS 133 (242)
T ss_dssp TSCCCCTTCCCSEEEECSSHHHHHH---------------------------------------HHHHHHHHHHHTTCCE
T ss_pred hccccccCCCCEEEEEeCcHHHHHH---------------------------------------HHHHHHHHHhhcCceE
Confidence 532 246789999999999999 4444555555567889
Q ss_pred EeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHH
Q 010028 172 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251 (520)
Q Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~ 251 (520)
..++|+.....+...+ ..+++|+|+||+++.+.+.. +...+.+++++|+||||++.+.
T Consensus 134 ~~~~g~~~~~~~~~~~---------------------~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 134 TCIYGGAPKGPQIRDL---------------------ERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp EEECTTSCHHHHHHHH---------------------HHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHT
T ss_pred EEEECCCChHHHHHHh---------------------cCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhh
Confidence 9999998766665443 34679999999999998876 3467889999999999999998
Q ss_pred HhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCce
Q 010028 252 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 331 (520)
Q Consensus 252 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~ 331 (520)
++...+..+++.++. ..|++++|||++.....+...++.+|.
T Consensus 192 ~~~~~~~~i~~~~~~--------------------------------------~~q~~~~SAT~~~~~~~~~~~~l~~~~ 233 (242)
T 3fe2_A 192 GFEPQIRKIVDQIRP--------------------------------------DRQTLMWSATWPKEVRQLAEDFLKDYI 233 (242)
T ss_dssp TCHHHHHHHHTTSCS--------------------------------------SCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred CcHHHHHHHHHhCCc--------------------------------------cceEEEEEeecCHHHHHHHHHHCCCCE
Confidence 888888888776543 347899999999889999999999998
Q ss_pred eeecccc
Q 010028 332 FLTTGET 338 (520)
Q Consensus 332 ~~~~~~~ 338 (520)
.+.....
T Consensus 234 ~i~~~~~ 240 (242)
T 3fe2_A 234 HINIGAL 240 (242)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 8776543
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=1.3e-30 Score=272.78 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=102.2
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhc-CCCceeEEEeccccCHHHHHHHHHHHHcC-Cce-EEEE
Q 010028 356 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVS 430 (520)
Q Consensus 356 ~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~-vLv~ 430 (520)
..|...+.+++... .+.++||||++...+..++..|... + ..+..+||.++..+|.++++.|++| +.+ +|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~s 400 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 400 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEE
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 45666667777664 6789999999999999999999874 4 6788899999999999999999998 455 7899
Q ss_pred ecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEE--EEecc
Q 010028 431 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKD 481 (520)
Q Consensus 431 T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~--~~~~~ 481 (520)
|+++++|+|+|++++||++++|+|+..|.|++||++|.|+.+.+.+ ++..+
T Consensus 401 t~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 401 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred cccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999999999999999998776644 44444
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=240.48 Aligned_cols=207 Identities=32% Similarity=0.505 Sum_probs=171.9
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
...+|++++ +++.+.+++..+||..|+++|.++++.+.. ++++++.+|||+|||++|++++++.+... .
T Consensus 41 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~-~ 109 (249)
T 3ber_A 41 ETKTFKDLG------VTDVLCEACDQLGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLET-P 109 (249)
T ss_dssp HHCCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHS-C
T ss_pred ccCCHHHcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcC-C
Confidence 456788888 999999999999999999999999999876 89999999999999999999999888765 3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||++|+++|+.|+ .+.+..+....++++..++|+..
T Consensus 110 ~~~~~lil~Ptr~L~~q~---------------------------------------~~~~~~~~~~~~~~~~~~~g~~~ 150 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQI---------------------------------------SEQFEALGSSIGVQSAVIVGGID 150 (249)
T ss_dssp CSSCEEEECSSHHHHHHH---------------------------------------HHHHHHHHGGGTCCEEEECTTSC
T ss_pred CCceEEEEeCCHHHHHHH---------------------------------------HHHHHHHhccCCeeEEEEECCCC
Confidence 456899999999999994 44455555555788888999877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 259 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~ 259 (520)
...+... +..+++|+|+||+++.+.+...+...+..+++||+||||++.+.++...+..
T Consensus 151 ~~~~~~~---------------------~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~ 209 (249)
T 3ber_A 151 SMSQSLA---------------------LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 209 (249)
T ss_dssp HHHHHHH---------------------HHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHH
T ss_pred hHHHHHH---------------------hcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHH
Confidence 5554332 3357899999999999988865556788999999999999998888888888
Q ss_pred HHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeec
Q 010028 260 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 335 (520)
Q Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~ 335 (520)
++..++. ..+++++|||++.....+.+.++.+|..+..
T Consensus 210 i~~~~~~--------------------------------------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 210 ILKVIPR--------------------------------------DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHSSCS--------------------------------------SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHhCCC--------------------------------------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 8765532 3478999999998888899999999887654
No 57
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=236.33 Aligned_cols=210 Identities=29% Similarity=0.467 Sum_probs=171.6
Q ss_pred CcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
+.....|++++ +++.+.+.+.++|+..|+++|.++++.+.. ++++++++|||+|||++|++|+++.+...
T Consensus 21 ~~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~ 90 (236)
T 2pl3_A 21 VNEITRFSDFP------LSKKTLKGLQEAQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRL 90 (236)
T ss_dssp GGGCSBGGGSC------CCHHHHHHHHHTTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHT
T ss_pred CcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhh
Confidence 34566799998 999999999999999999999999998876 89999999999999999999999887642
Q ss_pred c---cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEec
Q 010028 98 A---VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLA 174 (520)
Q Consensus 98 ~---~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (520)
. ..+.++||++|+++|+.| +.+.+..+....++.+..+
T Consensus 91 ~~~~~~~~~~lil~Pt~~L~~q---------------------------------------~~~~~~~~~~~~~~~~~~~ 131 (236)
T 2pl3_A 91 QWTSTDGLGVLIISPTRELAYQ---------------------------------------TFEVLRKVGKNHDFSAGLI 131 (236)
T ss_dssp TCCGGGCCCEEEECSSHHHHHH---------------------------------------HHHHHHHHTTTSSCCEEEE
T ss_pred cccccCCceEEEEeCCHHHHHH---------------------------------------HHHHHHHHhCCCCeeEEEE
Confidence 1 246789999999999999 4445555555567888889
Q ss_pred cCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhh
Q 010028 175 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 254 (520)
Q Consensus 175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~ 254 (520)
+|+.....+...+ .+++|+|+||+++...+.......+.+++++|+||||++.+.++.
T Consensus 132 ~g~~~~~~~~~~~----------------------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~ 189 (236)
T 2pl3_A 132 IGGKDLKHEAERI----------------------NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFA 189 (236)
T ss_dssp CCC--CHHHHHHH----------------------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTH
T ss_pred ECCCCHHHHHHhC----------------------CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcH
Confidence 9987655543321 467999999999998887655567788999999999999988888
Q ss_pred hhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeee
Q 010028 255 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 334 (520)
Q Consensus 255 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~ 334 (520)
..+..++..++. ..+++++|||++.....+.+..+.+|..+.
T Consensus 190 ~~~~~i~~~~~~--------------------------------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 190 DTMNAVIENLPK--------------------------------------KRQTLLFSATQTKSVKDLARLSLKNPEYVW 231 (236)
T ss_dssp HHHHHHHHTSCT--------------------------------------TSEEEEEESSCCHHHHHHHHHSCSSCEEEE
T ss_pred HHHHHHHHhCCC--------------------------------------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEE
Confidence 888888776542 346899999999888888898999998775
Q ss_pred cc
Q 010028 335 TG 336 (520)
Q Consensus 335 ~~ 336 (520)
..
T Consensus 232 ~~ 233 (236)
T 2pl3_A 232 VH 233 (236)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 58
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=241.38 Aligned_cols=220 Identities=30% Similarity=0.477 Sum_probs=167.0
Q ss_pred cccCCccc-CccCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhH
Q 010028 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84 (520)
Q Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~ 84 (520)
...+|.+| |.+.......|++++ +.+++++.+++..+||..|+++|.++++.+.. +++++++||||+|||+
T Consensus 35 ~~~~~~~p~~~~~~~~~~~f~~l~----~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~ 106 (262)
T 3ly5_A 35 ESEVPSLPLGLTGAFEDTSFASLC----NLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTL 106 (262)
T ss_dssp -----------CCBSGGGCC---------CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHH
T ss_pred cccCCCCccccccccccCChhHhc----cccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchH
Confidence 34456666 333333445555554 23899999999999999999999999998876 7999999999999999
Q ss_pred HhHHHHHHHHhhhc---cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHh
Q 010028 85 SYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFA 161 (520)
Q Consensus 85 ~~ll~il~~l~~~~---~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (520)
+|++|+++.+.... ..+.++||++||++|+.| +.+.+.
T Consensus 107 ~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q---------------------------------------~~~~~~ 147 (262)
T 3ly5_A 107 AFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQ---------------------------------------TFGVLK 147 (262)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHH---------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHhccccccCCceEEEEeCCHHHHHH---------------------------------------HHHHHH
Confidence 99999999886521 246689999999999999 444555
Q ss_pred hhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEE
Q 010028 162 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 241 (520)
Q Consensus 162 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lV 241 (520)
.+....+..+..++|+.....+... +..+++|+|+||+++...+.......+.++++||
T Consensus 148 ~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lV 206 (262)
T 3ly5_A 148 ELMTHHVHTYGLIMGGSNRSAEAQK---------------------LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLV 206 (262)
T ss_dssp HHTTTCCSCEEEECSSSCHHHHHHH---------------------HHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEE
T ss_pred HHHhhcCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEcHHHHHHHHHccCCcccccCCEEE
Confidence 5555667888889998776655433 2345799999999999988775556788999999
Q ss_pred eehHHHHHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchh
Q 010028 242 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 321 (520)
Q Consensus 242 iDEah~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 321 (520)
+||||++.+.++...+..++..++. ..|++++|||++..+..
T Consensus 207 iDEah~l~~~~~~~~l~~i~~~~~~--------------------------------------~~q~l~~SAT~~~~v~~ 248 (262)
T 3ly5_A 207 IDEADRILDVGFEEELKQIIKLLPT--------------------------------------RRQTMLFSATQTRKVED 248 (262)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHHSCS--------------------------------------SSEEEEECSSCCHHHHH
T ss_pred EcChHHHhhhhHHHHHHHHHHhCCC--------------------------------------CCeEEEEEecCCHHHHH
Confidence 9999999998888888888877643 34789999999988888
Q ss_pred hhhcccCCce
Q 010028 322 LAQLDLHHPL 331 (520)
Q Consensus 322 ~~~~~l~~~~ 331 (520)
+.+..+.++.
T Consensus 249 ~~~~~l~~~~ 258 (262)
T 3ly5_A 249 LARISLKKEP 258 (262)
T ss_dssp HHHHHCSSCC
T ss_pred HHHHHcCCCC
Confidence 8887776543
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=2.7e-29 Score=234.98 Aligned_cols=209 Identities=22% Similarity=0.315 Sum_probs=166.0
Q ss_pred cCCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..|.....|++++ +++.+.+.+.++||..|+++|.++++.+.. ++++++++|||+|||++|++|+++.+.
T Consensus 18 ~~~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~ 87 (230)
T 2oxc_A 18 VLLAEPADFESLL------LSRPVLEGLRAAGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLV 87 (230)
T ss_dssp ------CCGGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4455667788888 999999999999999999999999998876 899999999999999999999998876
Q ss_pred hhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-cceEEec
Q 010028 96 NRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLA 174 (520)
Q Consensus 96 ~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 174 (520)
.. ..+.++||++|+++|+.|+++ .+..+.... ++++..+
T Consensus 88 ~~-~~~~~~lil~Pt~~L~~q~~~---------------------------------------~~~~~~~~~~~~~~~~~ 127 (230)
T 2oxc_A 88 LE-NLSTQILILAPTREIAVQIHS---------------------------------------VITAIGIKMEGLECHVF 127 (230)
T ss_dssp TT-SCSCCEEEECSSHHHHHHHHH---------------------------------------HHHHHTTTSTTCCEEEE
T ss_pred hc-CCCceEEEEeCCHHHHHHHHH---------------------------------------HHHHHhcccCCceEEEE
Confidence 54 346789999999999999544 444444333 6788888
Q ss_pred cCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHH-h
Q 010028 175 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-Y 253 (520)
Q Consensus 175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~-~ 253 (520)
+|+.....+... ..+++|+|+||+++.+.+.. +...+.+++++|+||||++.+.+ +
T Consensus 128 ~g~~~~~~~~~~----------------------~~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~ 184 (230)
T 2oxc_A 128 IGGTPLSQDKTR----------------------LKKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSF 184 (230)
T ss_dssp CTTSCHHHHHHH----------------------TTSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSS
T ss_pred eCCCCHHHHHHh----------------------ccCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcch
Confidence 998776555332 23679999999999998876 44667889999999999998876 7
Q ss_pred hhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceee
Q 010028 254 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333 (520)
Q Consensus 254 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~ 333 (520)
...+..++..++. ..+++++|||++.....+...++.+|..+
T Consensus 185 ~~~~~~i~~~~~~--------------------------------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 185 QEQINWIYSSLPA--------------------------------------SKQMLAVSATYPEFLANALTKYMRDPTFV 226 (230)
T ss_dssp HHHHHHHHHHSCS--------------------------------------SCEEEEEESCCCHHHHHHHTTTCSSCEEE
T ss_pred HHHHHHHHHhCCC--------------------------------------CCeEEEEEeccCHHHHHHHHHHcCCCeEE
Confidence 7888888776542 34689999999888888888888888766
Q ss_pred ec
Q 010028 334 TT 335 (520)
Q Consensus 334 ~~ 335 (520)
..
T Consensus 227 ~~ 228 (230)
T 2oxc_A 227 RL 228 (230)
T ss_dssp CC
T ss_pred Ec
Confidence 43
No 60
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=244.92 Aligned_cols=207 Identities=21% Similarity=0.302 Sum_probs=167.7
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
...+|++++ |++.+.+++..+||..|+++|.++|+.++.. .+++++++||||||||++|++|+++++... .
T Consensus 90 ~~~~f~~l~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~ 160 (300)
T 3fmo_B 90 SVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-N 160 (300)
T ss_dssp CCCCSGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTT-S
T ss_pred CcCCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhcc-C
Confidence 456788887 9999999999999999999999999988761 138999999999999999999999988665 3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhccc-ccceEEeccCcc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPA-VGLSVGLAVGQS 178 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~~ 178 (520)
.++++||++||++||.|+ ...+..+... .++.+...+|+.
T Consensus 161 ~~~~~lil~PtreLa~Q~---------------------------------------~~~~~~l~~~~~~~~~~~~~~~~ 201 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQT---------------------------------------GKVIEQMGKFYPELKLAYAVRGN 201 (300)
T ss_dssp CSCCEEEECSSHHHHHHH---------------------------------------HHHHHHHTTTSTTCCEEEESTTC
T ss_pred CCceEEEEcCcHHHHHHH---------------------------------------HHHHHHHHhhCCCcEEEEEeCCc
Confidence 567899999999999994 4444444443 257777777775
Q ss_pred chHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhhhH
Q 010028 179 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWL 257 (520)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~~l 257 (520)
..... ...+++|+||||+++.+++.+.+.+.+.++++||+||||++++ .++...+
T Consensus 202 ~~~~~------------------------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~ 257 (300)
T 3fmo_B 202 KLERG------------------------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQS 257 (300)
T ss_dssp CCCTT------------------------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHH
T ss_pred cHhhh------------------------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHH
Confidence 53222 1246799999999999999876667889999999999999987 5777777
Q ss_pred HHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecc
Q 010028 258 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 336 (520)
Q Consensus 258 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~ 336 (520)
..++..++. ..|++++|||++..+..+...++.+|..+...
T Consensus 258 ~~i~~~~~~--------------------------------------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 258 IRIQRMLPR--------------------------------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHTTSCT--------------------------------------TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHHhCCC--------------------------------------CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 777665432 45799999999999999999999999877653
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.96 E-value=1.7e-29 Score=237.50 Aligned_cols=210 Identities=26% Similarity=0.401 Sum_probs=163.6
Q ss_pred CCcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
.|....+|++++ +++.+.+++..+||..|+++|.++++.++. ++++++.+|||+|||++|++++++.+..
T Consensus 25 ~~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~ 94 (237)
T 3bor_A 25 WNEIVDNFDDMN------LKESLLRGIYAYGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEI 94 (237)
T ss_dssp --CCCCSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred CCCccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 344567899998 999999999999999999999999999876 7999999999999999999999988764
Q ss_pred hccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccC
Q 010028 97 RAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVG 176 (520)
Q Consensus 97 ~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g 176 (520)
. ..+.++||++|+++|+.| +.+.+..+....+..+...+|
T Consensus 95 ~-~~~~~~lil~Pt~~L~~q---------------------------------------~~~~~~~~~~~~~~~~~~~~g 134 (237)
T 3bor_A 95 E-FKETQALVLAPTRELAQQ---------------------------------------IQKVILALGDYMGATCHACIG 134 (237)
T ss_dssp T-SCSCCEEEECSSHHHHHH---------------------------------------HHHHHHHHTTTTTCCEEEECC
T ss_pred c-CCCceEEEEECcHHHHHH---------------------------------------HHHHHHHHhhhcCceEEEEEC
Confidence 3 346689999999999999 445555555555777888888
Q ss_pred ccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhh
Q 010028 177 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 256 (520)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~ 256 (520)
+.....+...+ ....++|+|+||+.+.+.+.. +...+..+++||+||||++.+.++...
T Consensus 135 ~~~~~~~~~~l--------------------~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~ 193 (237)
T 3bor_A 135 GTNVRNEMQKL--------------------QAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQ 193 (237)
T ss_dssp ---------------------------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHH
T ss_pred CCchHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHH
Confidence 76644443221 113479999999999998876 346678899999999999988888888
Q ss_pred HHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeec
Q 010028 257 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 335 (520)
Q Consensus 257 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~ 335 (520)
+..++..+.. ..+++++|||++.....+...++.+|..+..
T Consensus 194 l~~i~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 194 IYEIFQKLNT--------------------------------------SIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHHHSCT--------------------------------------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HHHHHHhCCC--------------------------------------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 8877776532 3478999999998888888888888877654
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=2.4e-29 Score=235.18 Aligned_cols=211 Identities=29% Similarity=0.422 Sum_probs=166.8
Q ss_pred CccCCcccccccC-CCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHH
Q 010028 14 WMRSPVDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92 (520)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~ 92 (520)
-...|....+|++ ++ +++.+.+++.++||..|+++|.++++.+.. ++++++.+|||+|||++|++|++.
T Consensus 11 ~~~~p~p~~~f~~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~ 80 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQ------QYPDLLKSIIRVGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFI 80 (228)
T ss_dssp CCCCCCCCCSHHHHHT------TCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCcCCCChhhHhhhhc------cCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHH
Confidence 4456777778888 57 899999999999999999999999998876 899999999999999999999998
Q ss_pred HHhhh-----ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc
Q 010028 93 TLSNR-----AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV 167 (520)
Q Consensus 93 ~l~~~-----~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (520)
.+... ...+.++||++|+++|+.|++++ +..+. ..
T Consensus 81 ~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~---------------------------------------~~~~~-~~ 120 (228)
T 3iuy_A 81 HLDSQPISREQRNGPGMLVLTPTRELALHVEAE---------------------------------------CSKYS-YK 120 (228)
T ss_dssp HHC---------CCCSEEEECSSHHHHHHHHHH---------------------------------------HHHHC-CT
T ss_pred HHHhccchhhccCCCcEEEEeCCHHHHHHHHHH---------------------------------------HHHhc-cc
Confidence 77542 12567899999999999995444 44443 23
Q ss_pred cceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHH
Q 010028 168 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 247 (520)
Q Consensus 168 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 247 (520)
++++...+|+.....+... +..+++|+|+||+++.+.+.. ....+.+++++|+||||+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIED---------------------ISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADK 178 (228)
T ss_dssp TCCEEEECC------CHHH---------------------HHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHH
T ss_pred CceEEEEECCCChHHHHHH---------------------hcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHH
Confidence 6778888888765544332 335689999999999998876 446688999999999999
Q ss_pred HHHHHhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhccc
Q 010028 248 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 327 (520)
Q Consensus 248 l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l 327 (520)
+.+.++...+..++..+.. ..|++++|||++.....+....+
T Consensus 179 ~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~l~~SAT~~~~~~~~~~~~l 220 (228)
T 3iuy_A 179 MLDMEFEPQIRKILLDVRP--------------------------------------DRQTVMTSATWPDTVRQLALSYL 220 (228)
T ss_dssp HHHTTCHHHHHHHHHHSCS--------------------------------------SCEEEEEESCCCHHHHHHHHTTC
T ss_pred HhccchHHHHHHHHHhCCc--------------------------------------CCeEEEEEeeCCHHHHHHHHHHC
Confidence 9998888888888876543 34789999999988888998888
Q ss_pred CCceeee
Q 010028 328 HHPLFLT 334 (520)
Q Consensus 328 ~~~~~~~ 334 (520)
.+|..+.
T Consensus 221 ~~p~~i~ 227 (228)
T 3iuy_A 221 KDPMIVY 227 (228)
T ss_dssp SSCEEEE
T ss_pred CCCEEEe
Confidence 8887653
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=1.9e-29 Score=234.20 Aligned_cols=211 Identities=22% Similarity=0.341 Sum_probs=167.5
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~ 101 (520)
.+|++++ +++.+.+++.++||..|+++|.++++.+.. ++++++++|||+|||++|++|+++.+... ..+
T Consensus 4 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-~~~ 72 (219)
T 1q0u_A 4 TQFTRFP------FQPFIIEAIKTLRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPE-RAE 72 (219)
T ss_dssp CCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTT-SCS
T ss_pred CCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhC-cCC
Confidence 5688888 999999999999999999999999998876 79999999999999999999999887654 346
Q ss_pred ccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchH
Q 010028 102 LRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIA 181 (520)
Q Consensus 102 ~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~ 181 (520)
.++||++|+++|+.|++++++++ ........++.+..++|+....
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKI-----------------------------------TKFCPKDRMIVARCLIGGTDKQ 117 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHH-----------------------------------HTTSCGGGCCCEEEECCCSHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHHHH-----------------------------------hhhcccccceEEEEEeCCCCHH
Confidence 78999999999999966553332 1111122267788888887644
Q ss_pred HHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHHH
Q 010028 182 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 261 (520)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i~ 261 (520)
.+.. .+..+++|+|+||+++.+.+.. +...+..++++|+||||++.+.++...+..++
T Consensus 118 ~~~~---------------------~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~ 175 (219)
T 1q0u_A 118 KALE---------------------KLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIA 175 (219)
T ss_dssp HTTC---------------------CCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred HHHH---------------------HcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHHH
Confidence 3321 1234679999999999988876 44668899999999999999888878788777
Q ss_pred HhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeecccc
Q 010028 262 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 338 (520)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~ 338 (520)
..++. ..+++++|||++.....+.+.++.+|..+.....
T Consensus 176 ~~~~~--------------------------------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 176 ARMPK--------------------------------------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp HTSCT--------------------------------------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred HhCCc--------------------------------------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 76532 3478999999999898899999999987766544
No 64
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=4.2e-29 Score=229.65 Aligned_cols=202 Identities=27% Similarity=0.469 Sum_probs=164.8
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhcccc
Q 010028 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~ 101 (520)
..|++++ +++++.+.+.++||..|+++|.++++.+.. ++++++.+|||+|||+++++|++..+... ..+
T Consensus 3 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~ 71 (206)
T 1vec_A 3 NEFEDYC------LKRELLMGIFEMGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLK-KDN 71 (206)
T ss_dssp SSGGGSC------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCS
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhccc-CCC
Confidence 4688888 999999999999999999999999999876 79999999999999999999999877543 356
Q ss_pred ccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-cceEEeccCccch
Q 010028 102 LRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVGQSSI 180 (520)
Q Consensus 102 ~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~~~ 180 (520)
.++||++|+++|+.|+++ .+..+.... +..+...+|+...
T Consensus 72 ~~~lil~Pt~~L~~q~~~---------------------------------------~~~~~~~~~~~~~~~~~~g~~~~ 112 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQ---------------------------------------ICIQVSKHMGGAKVMATTGGTNL 112 (206)
T ss_dssp CCEEEECSCHHHHHHHHH---------------------------------------HHHHHTTTSSSCCEEEECSSSCH
T ss_pred eeEEEEeCcHHHHHHHHH---------------------------------------HHHHHHhhcCCceEEEEeCCccH
Confidence 689999999999999544 444444433 6788888888776
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+... ...+++|+|+||+++.+.+.. +...+.+++++|+||||++.+.++...+..+
T Consensus 113 ~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 170 (206)
T 1vec_A 113 RDDIMR---------------------LDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 170 (206)
T ss_dssp HHHHHH---------------------TTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHHh---------------------cCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHhHhhCcHHHHHHH
Confidence 554332 335679999999999988876 4456788999999999999887888888877
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceee
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 333 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~ 333 (520)
+..++. ..+++++|||++.....+...++.+|..+
T Consensus 171 ~~~~~~--------------------------------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 171 ILTLPK--------------------------------------NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHSCT--------------------------------------TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhCCc--------------------------------------cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 776542 34789999999988888888888887654
No 65
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.2e-28 Score=229.00 Aligned_cols=208 Identities=25% Similarity=0.366 Sum_probs=164.5
Q ss_pred CcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
+.+.+.|++++ |++.+.+++.++||..|+++|.++++.+.. ++++++++|||+|||++++++++..+...
T Consensus 10 ~~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~ 79 (220)
T 1t6n_A 10 SIHSSGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV 79 (220)
T ss_dssp ----CCSTTSC------CCHHHHHHHHHTTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCC
T ss_pred cccCCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhcc
Confidence 34456688888 999999999999999999999999999886 78999999999999999999999876543
Q ss_pred ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccc-cceEEeccC
Q 010028 98 AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAV-GLSVGLAVG 176 (520)
Q Consensus 98 ~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g 176 (520)
..+.++||++|+++|+.|+++ .+..+.... ++++..++|
T Consensus 80 -~~~~~~lil~Pt~~L~~q~~~---------------------------------------~~~~~~~~~~~~~v~~~~g 119 (220)
T 1t6n_A 80 -TGQVSVLVMCHTRELAFQISK---------------------------------------EYERFSKYMPNVKVAVFFG 119 (220)
T ss_dssp -TTCCCEEEECSCHHHHHHHHH---------------------------------------HHHHHTTTSTTCCEEEESC
T ss_pred -CCCEEEEEEeCCHHHHHHHHH---------------------------------------HHHHHHhhCCCceEEEEeC
Confidence 234589999999999999544 444444433 688888999
Q ss_pred ccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH-HHhhh
Q 010028 177 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQA 255 (520)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~~~~ 255 (520)
+.....+...+.. ..++|+|+||+.+...+.. ....+..++++|+||||++.+ .++..
T Consensus 120 ~~~~~~~~~~~~~--------------------~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~ 178 (220)
T 1t6n_A 120 GLSIKKDEEVLKK--------------------NCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRR 178 (220)
T ss_dssp CSCHHHHHHHHHH--------------------SCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHH
T ss_pred CCChHHHHHHHhc--------------------CCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcCHHHHhcccCcHH
Confidence 8876655443321 3569999999999988876 446688999999999999976 56666
Q ss_pred hHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeee
Q 010028 256 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 334 (520)
Q Consensus 256 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~ 334 (520)
.+..++...+. ..+++++|||++.....+.+.++.+|..+.
T Consensus 179 ~~~~i~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 179 DVQEIFRMTPH--------------------------------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHHHTSCS--------------------------------------SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHHHHhCCC--------------------------------------cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 67666655432 347899999999999999888888887653
No 66
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=238.54 Aligned_cols=216 Identities=27% Similarity=0.487 Sum_probs=170.5
Q ss_pred cCCcccccccCC----CCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHH
Q 010028 16 RSPVDVSLFEDC----PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91 (520)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il 91 (520)
..|..+.+|+++ + +++.+.+++.++||..|+++|.++++.+.. ++++++.+|||+|||++|++|++
T Consensus 19 ~~p~~~~~f~~l~~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l 88 (245)
T 3dkp_A 19 DLPDPIATFQQLDQEYK------INSRLLQNILDAGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPIL 88 (245)
T ss_dssp SCCCCCSSHHHHHHHHC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcccCHHHhhhccC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHH
Confidence 456677788877 5 899999999999999999999999998876 89999999999999999999999
Q ss_pred HHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceE
Q 010028 92 QTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 171 (520)
Q Consensus 92 ~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (520)
..+......+.++||++|+++|+.| +.+.+..+....++.+
T Consensus 89 ~~l~~~~~~~~~~lil~Pt~~L~~q---------------------------------------~~~~~~~~~~~~~~~~ 129 (245)
T 3dkp_A 89 MQLKQPANKGFRALIISPTRELASQ---------------------------------------IHRELIKISEGTGFRI 129 (245)
T ss_dssp HHHCSCCSSSCCEEEECSSHHHHHH---------------------------------------HHHHHHHHTTTSCCCE
T ss_pred HHHhhcccCCceEEEEeCCHHHHHH---------------------------------------HHHHHHHHhcccCceE
Confidence 9887654567789999999999999 4445555555557777
Q ss_pred EeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCC-CcccccccEEEeehHHHHHH
Q 010028 172 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~l~~ 250 (520)
...+|+........ .....+++|+|+||+++...+.... ...+.+++++|+||||++.+
T Consensus 130 ~~~~~~~~~~~~~~--------------------~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 130 HMIHKAAVAAKKFG--------------------PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp ECCCHHHHHHTTTS--------------------TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred EEEecCccHHHHhh--------------------hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 77776643222211 1123568999999999999887643 46788999999999999988
Q ss_pred H---HhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhccc
Q 010028 251 E---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 327 (520)
Q Consensus 251 ~---~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l 327 (520)
. ++...+..++..... +..+++++|||++..+..+.+..+
T Consensus 190 ~~~~~~~~~~~~i~~~~~~-------------------------------------~~~~~~~~SAT~~~~v~~~~~~~l 232 (245)
T 3dkp_A 190 DGKTGFRDQLASIFLACTS-------------------------------------HKVRRAMFSATFAYDVEQWCKLNL 232 (245)
T ss_dssp HC--CHHHHHHHHHHHCCC-------------------------------------TTCEEEEEESSCCHHHHHHHHHHS
T ss_pred cccccHHHHHHHHHHhcCC-------------------------------------CCcEEEEEeccCCHHHHHHHHHhC
Confidence 4 455556665544322 245789999999999999999999
Q ss_pred CCceeeeccc
Q 010028 328 HHPLFLTTGE 337 (520)
Q Consensus 328 ~~~~~~~~~~ 337 (520)
.+|..+.++.
T Consensus 233 ~~p~~i~~~~ 242 (245)
T 3dkp_A 233 DNVISVSIGA 242 (245)
T ss_dssp SSCEEEEECC
T ss_pred CCCEEEEeCC
Confidence 9998887654
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=4.6e-29 Score=232.58 Aligned_cols=209 Identities=25% Similarity=0.415 Sum_probs=164.9
Q ss_pred CcccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh
Q 010028 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (520)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~ 97 (520)
|.....|++++ +++.+.+.+..+||..|+++|.++++.+.+ ++++++.+|||+|||++|++++++.+...
T Consensus 10 ~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~ 79 (224)
T 1qde_A 10 DKVVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS 79 (224)
T ss_dssp CCCCCCGGGGT------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred CcccCChhhcC------CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhcc
Confidence 34466799998 999999999999999999999999998876 79999999999999999999999887654
Q ss_pred ccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCc
Q 010028 98 AVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQ 177 (520)
Q Consensus 98 ~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 177 (520)
..+.++||++|+++|+.| +.+.+..+....++++...+|+
T Consensus 80 -~~~~~~lil~Pt~~L~~q---------------------------------------~~~~~~~~~~~~~~~~~~~~g~ 119 (224)
T 1qde_A 80 -VKAPQALMLAPTRELALQ---------------------------------------IQKVVMALAFHMDIKVHACIGG 119 (224)
T ss_dssp -CCSCCEEEECSSHHHHHH---------------------------------------HHHHHHHHTTTSCCCEEEECC-
T ss_pred -CCCceEEEEECCHHHHHH---------------------------------------HHHHHHHHhcccCceEEEEeCC
Confidence 356789999999999999 5555555555567888888888
Q ss_pred cchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhH
Q 010028 178 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 257 (520)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l 257 (520)
.....+... ...++|+|+||+.+.+.+.. ....+.+++++|+||||++.+.++...+
T Consensus 120 ~~~~~~~~~----------------------~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l 176 (224)
T 1qde_A 120 TSFVEDAEG----------------------LRDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQI 176 (224)
T ss_dssp -------------------------------CTTCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred cchHHHHhc----------------------CCCCCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHH
Confidence 765444221 12379999999999988876 3466788999999999999888888878
Q ss_pred HHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeeccc
Q 010028 258 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 337 (520)
Q Consensus 258 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~ 337 (520)
..++..++. ..+++++|||++.....+...++.+|..+....
T Consensus 177 ~~i~~~~~~--------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 177 YQIFTLLPP--------------------------------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHHHHHSCT--------------------------------------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred HHHHHhCCc--------------------------------------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 877766532 347899999999888888888888888776554
No 68
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.96 E-value=3.3e-29 Score=238.07 Aligned_cols=214 Identities=27% Similarity=0.430 Sum_probs=172.2
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-
Q 010028 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA- 98 (520)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~- 98 (520)
...+|++++ +++.+.+++..+||..|+++|.++++.++. ++++++++|||+|||++|++|+++.+....
T Consensus 21 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~ 90 (253)
T 1wrb_A 21 VIENFDELK------LDPTIRNNILLASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDL 90 (253)
T ss_dssp CCCSSGGGS------CCCSTTTTTTTTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhcc
Confidence 566799998 788888999999999999999999999876 899999999999999999999999876532
Q ss_pred -------cccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceE
Q 010028 99 -------VRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSV 171 (520)
Q Consensus 99 -------~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (520)
..++++||++|+++|+.|+ .+.+..+....++.+
T Consensus 91 ~~~~~~~~~~~~~lil~Pt~~L~~q~---------------------------------------~~~~~~~~~~~~~~~ 131 (253)
T 1wrb_A 91 NQQRYSKTAYPKCLILAPTRELAIQI---------------------------------------LSESQKFSLNTPLRS 131 (253)
T ss_dssp ------CCBCCSEEEECSSHHHHHHH---------------------------------------HHHHHHHHTTSSCCE
T ss_pred ccccccccCCceEEEEECCHHHHHHH---------------------------------------HHHHHHHhccCCceE
Confidence 2346899999999999994 444555555557888
Q ss_pred EeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHH
Q 010028 172 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251 (520)
Q Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~ 251 (520)
..++|+.....+... +..+++|+|+||+++.+.+... ...+..++++|+||||++.+.
T Consensus 132 ~~~~g~~~~~~~~~~---------------------~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~ 189 (253)
T 1wrb_A 132 CVVYGGADTHSQIRE---------------------VQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADRMLDM 189 (253)
T ss_dssp EEECSSSCSHHHHHH---------------------HSSCCSEEEECHHHHHHHHHTT-SBCCTTCCEEEEETHHHHHHT
T ss_pred EEEECCCCHHHHHHH---------------------hCCCCCEEEECHHHHHHHHHcC-CCChhhCCEEEEeCHHHHHhC
Confidence 888888776555433 3356899999999999988863 466888999999999999988
Q ss_pred HhhhhHHHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCce
Q 010028 252 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 331 (520)
Q Consensus 252 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~ 331 (520)
++...+..++..+.... ....|++++|||++.....+...++.+|.
T Consensus 190 ~~~~~~~~i~~~~~~~~----------------------------------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 235 (253)
T 1wrb_A 190 GFEPQIRKIIEESNMPS----------------------------------GINRQTLMFSATFPKEIQKLAADFLYNYI 235 (253)
T ss_dssp TCHHHHHHHHHSSCCCC----------------------------------GGGCEEEEEESSCCHHHHHHHHHHCSSCE
T ss_pred chHHHHHHHHhhccCCC----------------------------------CCCcEEEEEEEeCCHHHHHHHHHHcCCCE
Confidence 88888888887543211 02457899999999888888888888988
Q ss_pred eeecccc
Q 010028 332 FLTTGET 338 (520)
Q Consensus 332 ~~~~~~~ 338 (520)
.+.....
T Consensus 236 ~i~~~~~ 242 (253)
T 1wrb_A 236 FMTVGRV 242 (253)
T ss_dssp EEEEC--
T ss_pred EEEECCC
Confidence 8766554
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=1.7e-27 Score=245.96 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=135.9
Q ss_pred heeeecccccCCchhhhhcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHH
Q 010028 307 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVEST 384 (520)
Q Consensus 307 ~~i~~SaT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~ 384 (520)
++.+||+|.......+.+.+. ..++.+....+...... ..........|...+...+... .+.++||||+|++.+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~--l~vv~IPtnkp~~R~d~-~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG--MEVVVIPTHKPMIRKDH-DDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKS 487 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC--CCEEECCCSSCCCCEEC-CCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHH
T ss_pred HHeEECCCCchHHHHHHHHhC--CeEEEECCCCCcceeec-CcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHH
Confidence 388999999766655555443 33444433322211111 1223345556777888777653 567899999999999
Q ss_pred HHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCC--------CCcEEEEccCCCCHH
Q 010028 385 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKPAYIK 456 (520)
Q Consensus 385 ~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~--------~~~~VI~~~~p~s~~ 456 (520)
+.+++.|...+ +.+..+||++...++..+...++.| .|+|||+++++|+|++ +..+||+++.|.|..
T Consensus 488 E~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r 562 (822)
T 3jux_A 488 ELLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRR 562 (822)
T ss_dssp HHHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHH
T ss_pred HHHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHH
Confidence 99999999876 8889999997776666666666655 6999999999999998 677999999999999
Q ss_pred HHHHHHhhcccCCCCCcEEEEEecch-H------HHHHHHHHHhc
Q 010028 457 TYIHRAGRTARAGQLGRCFTLLHKDE-V------KRFKKLLQKAD 494 (520)
Q Consensus 457 ~~~Q~~GR~~R~~~~g~~i~~~~~~~-~------~~~~~~~~~~~ 494 (520)
.|.||+||+||.|.+|.+++|++.+| . +++.++++.+.
T Consensus 563 ~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 563 IDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp HHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 99999999999999999999999876 2 45666666654
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=2.7e-28 Score=269.38 Aligned_cols=346 Identities=16% Similarity=0.153 Sum_probs=212.6
Q ss_pred HHHHHHHHHCC-------CCCcchhhHHHHHhhhCCCC----------CCCCEEEECCCCChhhHHhHHHHHHHHhhhcc
Q 010028 37 PRLKVALQNMG-------ISSLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (520)
Q Consensus 37 ~~~~~~l~~~~-------~~~~~~~Q~~ai~~~~~~~~----------~~~~~li~apTGsGKT~~~ll~il~~l~~~~~ 99 (520)
+.++..+..+- ...||++|.+|++.++..+. .+++++++++||||||+++ +++++.+... .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-D 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-T
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-C
Confidence 34555555541 23699999999998876321 2368999999999999997 5566544332 2
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
...++|||+|+++|+.|+.++ +..+... ...++.+
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~---------------------------------------f~~f~~~------~v~~~~s 363 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKE---------------------------------------YQRFSPD------SVNGSEN 363 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHH---------------------------------------HHTTSTT------CSSSSCC
T ss_pred CCceEEEEeCcHHHHHHHHHH---------------------------------------HHHhccc------ccccccC
Confidence 345899999999999995444 3333321 1122222
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhh-ccCCcEEEeCchHHHHHHhcCCC-cccccccEEEeehHHHHHHHHhhhhH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 257 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~l~~~~~-~~~~~~~~lViDEah~l~~~~~~~~l 257 (520)
..... ..+ ..+++|+|+||++|...+..... ..+....+||+||||++.... ..
T Consensus 364 ~~~l~---------------------~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~---~~ 419 (1038)
T 2w00_A 364 TAGLK---------------------RNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGE---AQ 419 (1038)
T ss_dssp CHHHH---------------------HHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHH---HH
T ss_pred HHHHH---------------------HHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchH---HH
Confidence 22221 122 24579999999999887764321 235678899999999975433 23
Q ss_pred HHHHHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCch----hhhhcccC-----
Q 010028 258 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN----KLAQLDLH----- 328 (520)
Q Consensus 258 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~----~~~~~~l~----- 328 (520)
..+.+.++ ..+.+++|||+..... .......+
T Consensus 420 ~~I~~~~p---------------------------------------~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~ 460 (1038)
T 2w00_A 420 KNLKKKFK---------------------------------------RYYQFGFTGTPIFPENALGSETTASVFGRELHS 460 (1038)
T ss_dssp HHHHHHCS---------------------------------------SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEE
T ss_pred HHHHHhCC---------------------------------------cccEEEEeCCccccccchhhhHHHHHhCCeeEe
Confidence 34444332 2357999999874321 01111111
Q ss_pred ------------CceeeecccccccC-----ccc------cchhhhhccCCCcHHHHHH-HHH---hc--------CCCc
Q 010028 329 ------------HPLFLTTGETRYKL-----PER------LESYKLICESKLKPLYLVA-LLQ---SL--------GEEK 373 (520)
Q Consensus 329 ------------~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~k~~~l~~-~~~---~~--------~~~k 373 (520)
-|..+......... ... +...... ....+...+.. ++. .. .+.+
T Consensus 461 Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~k 539 (1038)
T 2w00_A 461 YVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFN 539 (1038)
T ss_dssp ECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCE
T ss_pred ecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 11111000000000 000 0000000 11122233322 222 11 3458
Q ss_pred EEEEecCHHHHHHHHHHHhhcCC---------CceeE-EEeccc----------c----------CH-------------
Q 010028 374 CIVFTSSVESTHRLCTLLNHFGE---------LRIKI-KEYSGL----------Q----------RQ------------- 410 (520)
Q Consensus 374 ~lIf~~s~~~~~~l~~~L~~~~~---------~~~~v-~~~~~~----------~----------~~------------- 410 (520)
++|||+|+.+|..+++.|...+. ...++ .++|+. + +.
T Consensus 540 amVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dy 619 (1038)
T 2w00_A 540 AMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREY 619 (1038)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 99999999999999999987531 12344 345542 1 11
Q ss_pred ----------------HHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCC---
Q 010028 411 ----------------SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--- 471 (520)
Q Consensus 411 ----------------~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~--- 471 (520)
.+|..++++|++|+.+|||+|+++.+|+|+|.+ .++.+|.|.+...|+|++||++|.++.
T Consensus 620 n~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~ 698 (1038)
T 2w00_A 620 NSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKT 698 (1038)
T ss_dssp HHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCC
T ss_pred HHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCC
Confidence 147889999999999999999999999999999 577899999999999999999998753
Q ss_pred -CcEEEEEecchHHHHHHHHHHhcCC
Q 010028 472 -GRCFTLLHKDEVKRFKKLLQKADND 496 (520)
Q Consensus 472 -g~~i~~~~~~~~~~~~~~~~~~~~~ 496 (520)
|.++.|+ ...+.+.+.++.+.+.
T Consensus 699 ~G~IVdf~--~~~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 699 FGNIVTFR--DLERSTIDAITLFGDK 722 (1038)
T ss_dssp SEEEEESS--CCHHHHHHHHHHTSCS
T ss_pred cEEEEEcc--ccHHHHHHHHHHHhCC
Confidence 4444444 4556666666666553
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-28 Score=266.99 Aligned_cols=136 Identities=23% Similarity=0.299 Sum_probs=114.5
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCc---eEEE
Q 010028 355 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLV 429 (520)
Q Consensus 355 ~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~---~vLv 429 (520)
...|...+..++... .+.++||||.....+..+...|...+ +.+..+||.++..+|.++++.|+++.. .+|+
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~Ll 630 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKG---INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLL 630 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHT---CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEE
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEE
Confidence 345667777777765 56799999999999999999998776 788999999999999999999998654 4899
Q ss_pred EecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEE--EEecc--hHHHHHHHHHHh
Q 010028 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKD--EVKRFKKLLQKA 493 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~--~~~~~--~~~~~~~~~~~~ 493 (520)
+|.++++|+|++.+++||++|+|+|+..+.||+||++|.|+...|.+ |+..+ |...++...+++
T Consensus 631 St~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 631 STRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp EHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred ecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765544 45554 455555555544
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=3.5e-28 Score=223.61 Aligned_cols=202 Identities=34% Similarity=0.504 Sum_probs=163.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh--ccc
Q 010028 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVR 100 (520)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~--~~~ 100 (520)
+|++++ +++.+.+.+.++|+..|+++|.++++.+.+ ++++++.+|||+|||+++++++++.+... ...
T Consensus 2 ~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~ 71 (207)
T 2gxq_A 2 EFKDFP------LKPEILEALHGRGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGR 71 (207)
T ss_dssp CGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTC
T ss_pred ChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 477888 999999999999999999999999999876 89999999999999999999999887642 124
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
+.+++|++|+++|+.|++++ +..+.. ..++...+|+...
T Consensus 72 ~~~~lil~P~~~L~~q~~~~---------------------------------------~~~~~~--~~~~~~~~~~~~~ 110 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASE---------------------------------------LTAVAP--HLKVVAVYGGTGY 110 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHH---------------------------------------HHHHCT--TSCEEEECSSSCS
T ss_pred CCcEEEEECCHHHHHHHHHH---------------------------------------HHHHhh--cceEEEEECCCCh
Confidence 67899999999999995444 444433 2567777887765
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHhhhhHHHH
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 260 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~~~~l~~i 260 (520)
..+... ...+++|+|+||+.+.+.+.. +...+.+++++|+||||++.+.++...+..+
T Consensus 111 ~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i 168 (207)
T 2gxq_A 111 GKQKEA---------------------LLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEAL 168 (207)
T ss_dssp HHHHHH---------------------HHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHH---------------------hhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHH
Confidence 544332 234679999999999988876 4466889999999999999888888888877
Q ss_pred HHhhccCcccccccccccccccccchhhhcccccccCCCCCCccchheeeecccccCCchhhhhcccCCceeeec
Q 010028 261 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 335 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~l~~~~~~~~ 335 (520)
+...+. ..+++++|||++.....+.+.++.+|..+..
T Consensus 169 ~~~~~~--------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 169 LSATPP--------------------------------------SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHTSCT--------------------------------------TSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHhCCc--------------------------------------cCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 765432 3478999999998888888888888877643
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=5e-27 Score=251.37 Aligned_cols=134 Identities=21% Similarity=0.233 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHh---cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCc---eEEE
Q 010028 356 KLKPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLV 429 (520)
Q Consensus 356 ~~k~~~l~~~~~~---~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~---~vLv 429 (520)
..|...+..++.. ..+.++||||++...+..+...|...+ +.+..+||.++..+|.++++.|++++. .+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 474 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML 474 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Confidence 3455555555543 357899999999999999999998776 788999999999999999999999865 4889
Q ss_pred EecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEE--EEecc--hHHHHHHHHHH
Q 010028 430 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKD--EVKRFKKLLQK 492 (520)
Q Consensus 430 ~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~--~~~~~--~~~~~~~~~~~ 492 (520)
+|.++++|+|++++++||++|+|+|+..+.|++||++|.|+...|.+ |+... |...+.....+
T Consensus 475 st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 475 SSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp EGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred ecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765554 45544 33444444443
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=3.9e-25 Score=236.42 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=109.9
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc
Q 010028 357 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 434 (520)
Q Consensus 357 ~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (520)
.+...+...+... .+.++||||+|...++.+++.|...+ +.+..+||+++..+|.++++.|+.|+.+|||||+++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l 499 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 499 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChh
Confidence 3445554544432 67799999999999999999999876 788999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEccC-----CCCHHHHHHHHhhcccCCCCCcEEEEEecchHH
Q 010028 435 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 484 (520)
Q Consensus 435 ~~Gidl~~~~~VI~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~ 484 (520)
++|+|+|++++||+++. |.|...|+||+||+||.+ .|.+++|++..+..
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~ 553 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEA 553 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHH
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHH
Confidence 99999999999999997 899999999999999985 89999999886543
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=7e-25 Score=193.24 Aligned_cols=150 Identities=26% Similarity=0.448 Sum_probs=139.5
Q ss_pred ccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHc
Q 010028 343 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 422 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 422 (520)
+..+.+.+..+....|...+..++....++++||||++...+..+++.|...+ +.+..+||+|+..+|..+++.|++
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34566777777788899999999998888999999999999999999999865 789999999999999999999999
Q ss_pred CCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 423 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 423 g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
|+.+|||+|+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++|+...+...++++.+.+..
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887753
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=3.6e-24 Score=228.87 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=109.6
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc
Q 010028 357 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 434 (520)
Q Consensus 357 ~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (520)
.+...+...+... .+.++||||+|...++.+++.|+..+ +.+..+||+++..+|.++++.|++|+.+|||||+++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l 505 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 505 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchh
Confidence 3445554444443 56799999999999999999999876 788999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEccC-----CCCHHHHHHHHhhcccCCCCCcEEEEEecchH
Q 010028 435 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 483 (520)
Q Consensus 435 ~~Gidl~~~~~VI~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 483 (520)
++|+|+|++++||+++. |.|...|+||+||+||. ..|.+++|+++.+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCH
Confidence 99999999999999997 99999999999999998 68999999988654
No 77
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=6.5e-25 Score=193.94 Aligned_cols=156 Identities=27% Similarity=0.460 Sum_probs=134.5
Q ss_pred cchhhhhccCCC-cHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC
Q 010028 346 LESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424 (520)
Q Consensus 346 ~~~~~~~~~~~~-k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~ 424 (520)
+.+++..+.... |.+.+..+++....+++||||++...++.++..|+..+ +.+..+||+++..+|.++++.|++|+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 445555556555 99999999999888999999999999999999999865 78999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCCcccCC
Q 010028 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 504 (520)
Q Consensus 425 ~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (520)
.+|||+|+++++|+|+|++++||++++|.+...|.||+||+||.|+.|.+++|+.+.+...+.++.+.+.... .+++
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 157 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI---EELP 157 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCC---EECC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCc---cccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987665433 4455
Q ss_pred chh
Q 010028 505 SSL 507 (520)
Q Consensus 505 ~~~ 507 (520)
..+
T Consensus 158 ~~~ 160 (165)
T 1fuk_A 158 SDI 160 (165)
T ss_dssp SCC
T ss_pred ccH
Confidence 443
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=8.4e-25 Score=196.60 Aligned_cols=162 Identities=29% Similarity=0.482 Sum_probs=132.5
Q ss_pred CccccchhhhhccCCCcHHHHHHHHHhc-CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH
Q 010028 342 LPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 420 (520)
Q Consensus 342 ~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f 420 (520)
.+..+.+.+..++...|...|..++... .++++||||++...++.+++.|+..+ +.+..+||+++..+|.++++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHH
Confidence 3556777777777888999999999887 57899999999999999999999865 7899999999999999999999
Q ss_pred HcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCCc
Q 010028 421 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 500 (520)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (520)
++|+.+|||+|+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++|+...+...++++++.+....
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--- 169 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK--- 169 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT---
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887654
Q ss_pred ccCCchhhh
Q 010028 501 HSIPSSLIE 509 (520)
Q Consensus 501 ~~~~~~~~~ 509 (520)
.++|+.+.+
T Consensus 170 ~~~~~~l~~ 178 (185)
T 2jgn_A 170 QEVPSWLEN 178 (185)
T ss_dssp CCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 566665544
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=193.68 Aligned_cols=150 Identities=29% Similarity=0.501 Sum_probs=133.8
Q ss_pred ccccchhhhhccCCC-cHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHH
Q 010028 343 PERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 421 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~-k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~ 421 (520)
+..+.+++..++... |.+.+..++.....+++||||+++..++.++..|...+ ..+..+||+|+..+|.++++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHH
Confidence 445666666666554 88999999988888999999999999999999999765 78999999999999999999999
Q ss_pred cCCceEEEEecccccCCCCCCCcEEEEccCC------CCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 422 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 422 ~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
+|+.+|||+|+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++|+...+...++++.+.++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999887764
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=196.28 Aligned_cols=176 Identities=25% Similarity=0.349 Sum_probs=135.4
Q ss_pred hcccCCceeeecccccccCccccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEE
Q 010028 324 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 403 (520)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~ 403 (520)
+.++.+|..+.+.... .....+.+....+....|...+..++... ++++||||++...++.+++.|+..+ +.+..
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~ 83 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVA 83 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEE
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEE
Confidence 3456667666655443 34456777777777788999998888775 4689999999999999999999875 78999
Q ss_pred eccccCHHHHHHHHHHHHcCCceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecc-h
Q 010028 404 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-E 482 (520)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~ 482 (520)
+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++|+... +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HHHHHHHHHHhcCCCCCcccCCchh
Q 010028 483 VKRFKKLLQKADNDSCPIHSIPSSL 507 (520)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (520)
...++.+.+.+.... .++|+.+
T Consensus 164 ~~~~~~l~~~l~~~~---~~~p~~l 185 (191)
T 2p6n_A 164 ESVLMDLKALLLEAK---QKVPPVL 185 (191)
T ss_dssp HHHHHHHHHHHHHTT---CCCCHHH
T ss_pred HHHHHHHHHHHHHcc---CcCCHHH
Confidence 677777766665544 5566554
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=2e-24 Score=191.93 Aligned_cols=157 Identities=26% Similarity=0.398 Sum_probs=137.9
Q ss_pred cccchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcC
Q 010028 344 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 423 (520)
Q Consensus 344 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 423 (520)
..+.+++..++...|...+..+++....+++||||++...++.+++.|...+ +.+..+||+|+..+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHCC
Confidence 4566677777778899999999999888999999999999999999999865 7899999999999999999999999
Q ss_pred CceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecc-hHHHHHHHHHHhcCCCCCccc
Q 010028 424 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADNDSCPIHS 502 (520)
Q Consensus 424 ~~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 502 (520)
+.+|||+|+++++|+|+|++++||++++|+|...|+||+||+||.|+.|.+++|+.+. +...++.+.+.+.. ...+
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~---~~~~ 157 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV---NISE 157 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC---CEEE
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc---chhh
Confidence 9999999999999999999999999999999999999999999999999999999876 56677777766553 2344
Q ss_pred CCch
Q 010028 503 IPSS 506 (520)
Q Consensus 503 ~~~~ 506 (520)
+|..
T Consensus 158 ~~~~ 161 (172)
T 1t5i_A 158 LPDE 161 (172)
T ss_dssp CC--
T ss_pred CChh
Confidence 5543
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=1e-23 Score=193.98 Aligned_cols=146 Identities=30% Similarity=0.448 Sum_probs=133.7
Q ss_pred chhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCce
Q 010028 347 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 426 (520)
Q Consensus 347 ~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (520)
.+....+....|.+.+..++....++++||||+++..++.+++.|...+ +.+..+||+++..+|.++++.|++|+.+
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 3444556678899999999998889999999999999999999999876 8899999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 427 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 427 vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+...+...++.+.+.++.
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998877664
No 83
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=1.4e-23 Score=220.08 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=57.9
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
.|| .||++|.+++..+...+..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+++++.++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 366 89999999988776666678999999999999999999998752 458999999999999999888774
No 84
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=8.3e-22 Score=207.42 Aligned_cols=131 Identities=25% Similarity=0.295 Sum_probs=105.9
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.|+ .|++.|..++..+.. |+ +..+.||+|||+++.+|++.+... +..++|++||+.||.|
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Q--------- 135 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARR--------- 135 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHH---------
T ss_pred hCC-CCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHH---------
Confidence 688 999999999998775 66 889999999999999999655443 3479999999999999
Q ss_pred ccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHH
Q 010028 126 CKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 205 (520)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (520)
....+..+....++++++++|+.+...+...
T Consensus 136 ------------------------------dae~m~~l~~~lGLsv~~i~Gg~~~~~r~~a------------------- 166 (997)
T 2ipc_A 136 ------------------------------DAEWMGPVYRGLGLSVGVIQHASTPAERRKA------------------- 166 (997)
T ss_dssp ------------------------------HHHHHHHHHHTTTCCEEECCTTCCHHHHHHH-------------------
T ss_pred ------------------------------HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH-------------------
Confidence 5555666667779999999999875433222
Q ss_pred HhhccCCcEEEeCchHH-HHHHhcCC-----Ccccc---cccEEEeehHHHHH
Q 010028 206 QELQSAVDILVATPGRL-MDHINATR-----GFTLE---HLCYLVVDETDRLL 249 (520)
Q Consensus 206 ~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~---~~~~lViDEah~l~ 249 (520)
.+++|+||||+.+ .+++..+- ...++ .+.++|+||+|.++
T Consensus 167 ----y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 167 ----YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp ----HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred ----cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 3579999999999 77776542 24567 89999999999986
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=7.2e-23 Score=197.10 Aligned_cols=147 Identities=29% Similarity=0.445 Sum_probs=132.1
Q ss_pred cchhhhhccCCCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCc
Q 010028 346 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 425 (520)
Q Consensus 346 ~~~~~~~~~~~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~ 425 (520)
+.++...+....|.+.+..++....++++||||+++..++.++..|...+ +.+..+||+|+..+|..+++.|++|+.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 34556667778899999999998889999999999999999999998765 889999999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 426 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 426 ~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++|+...+...++.+.+.+..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988777664
No 86
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=4.1e-22 Score=209.70 Aligned_cols=183 Identities=17% Similarity=0.010 Sum_probs=108.5
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.||++|.+++..+...+..++++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++.++.....
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 7999999998887766667899999999999999999999987 245899999999999999888877644322
Q ss_pred ccccchhhhhHHhhh-cccchhccchhhHHHHhhhcccccceEEeccCc-cchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 130 FGLIADHSIAEMCVQ-FDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQ-SSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
...........+|.+ ... ...... ....+..|..... .|. .............. .....+++...+.
T Consensus 76 ~~~~~l~gr~~~c~~~~~~-~~~~~~-~c~~c~~~~~~~~------~g~~~~~~~~~~~~~~~G---~~~~~Cpy~~ar~ 144 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKG-AESEDI-PCKYCELKGSIVE------VKTDDSPLSLVKKLKKDG---LQDKFCPYYSLLN 144 (551)
T ss_dssp CCEEECCCHHHHCTTBCTT-CCGGGC-CGGGCTTTTCCCC------CCCCSCHHHHHHHHHHHH---HHHTCCHHHHHHH
T ss_pred ccEEEEccccccCcCchhc-CCCccc-ccCCCCCcccccc------ccccCCHHHHHHHHHHcC---CcCCcCccHHHHh
Confidence 222222222233332 111 000000 0000000110000 010 01111111110000 0123345666667
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHH
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 250 (520)
....++|+|+||..+.+...+..........++||||||++.+
T Consensus 145 ~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 145 SLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 7778999999999998765443211224677999999999876
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.80 E-value=1.7e-24 Score=192.23 Aligned_cols=146 Identities=32% Similarity=0.499 Sum_probs=132.7
Q ss_pred cchhhhhccC-CCcHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCC
Q 010028 346 LESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 424 (520)
Q Consensus 346 ~~~~~~~~~~-~~k~~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~ 424 (520)
+.+.+..++. ..|...+..+++...++++||||++...++.+++.|+..+ +.+..+||+++..+|.++++.|++|+
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 4455555555 7788888888888788899999999999999999998765 78999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhc
Q 010028 425 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 494 (520)
Q Consensus 425 ~~vLv~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~ 494 (520)
.+|||+|+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++|+...+...++++.+.++
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999888888877554
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.86 E-value=4.5e-21 Score=203.26 Aligned_cols=198 Identities=17% Similarity=0.105 Sum_probs=115.3
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.||+.|.+++.++.+.+.+++++++.||||+|||++|++|++..+... +.+++|++||++++.|+.++++++.....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 689999999998877776799999999999999999999999887643 45899999999999999999988765444
Q ss_pred ccccchhhhhHHhh-hcc--cchhccchh---hHHHHhh-hcccccceEEeccCccchHHHHHHH-hhccccc------c
Q 010028 130 FGLIADHSIAEMCV-QFD--SLLFISLPQ---VKDVFAA-IAPAVGLSVGLAVGQSSIADEISEL-IKRPKLE------A 195 (520)
Q Consensus 130 ~~~~~~~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~~~~------~ 195 (520)
...........+|- +=. .+.....+. ......+ +.....-.|....+..........+ ......+ .
T Consensus 80 ~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~~ 159 (620)
T 4a15_A 80 IRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGE 159 (620)
T ss_dssp CCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHHH
T ss_pred eEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHhh
Confidence 44444444455776 311 111111111 1111110 0000000000011110000000011 1111111 1
Q ss_pred cccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCC---c-ccccccEEEeehHHHHHH
Q 010028 196 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---F-TLEHLCYLVVDETDRLLR 250 (520)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~---~-~~~~~~~lViDEah~l~~ 250 (520)
....+++...+.....+||+|+++..+.+...+... . ....-.++||||||++.+
T Consensus 160 ~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 160 RNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp HTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 134567888888888999999999776443322110 0 113446999999998864
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=172.56 Aligned_cols=144 Identities=21% Similarity=0.228 Sum_probs=98.4
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc--cccccEEEEcCCHHHHHh-HHhhhh
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VNSARC 122 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~--~~~~~vlil~Pt~~La~q-~~~~~~ 122 (520)
.....|+++|.++++.++. ++++++.+|||+|||++++++++..+.... ..+.++||++|+++|+.| +.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~-- 102 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKE-- 102 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT--
T ss_pred cCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHH--
Confidence 3445899999999998876 789999999999999999998887765432 235689999999999999 4333
Q ss_pred cccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCch
Q 010028 123 KYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 202 (520)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (520)
+..+... ++++..++|+.........
T Consensus 103 -------------------------------------~~~~~~~-~~~v~~~~g~~~~~~~~~~---------------- 128 (216)
T 3b6e_A 103 -------------------------------------FQPFLKK-WYRVIGLSGDTQLKISFPE---------------- 128 (216)
T ss_dssp -------------------------------------HHHHHTT-TSCEEECCC---CCCCHHH----------------
T ss_pred -------------------------------------HHHHhcc-CceEEEEeCCcccchhHHh----------------
Confidence 2222222 5677777777543322211
Q ss_pred hHHHhhccCCcEEEeCchHHHHHHhcCCC-----cccccccEEEeehHHHHHHHHhh
Q 010028 203 DVLQELQSAVDILVATPGRLMDHINATRG-----FTLEHLCYLVVDETDRLLREAYQ 254 (520)
Q Consensus 203 ~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-----~~~~~~~~lViDEah~l~~~~~~ 254 (520)
....++|+|+||+.+...+..... ..+..+++||+||||++.+..+.
T Consensus 129 -----~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 129 -----VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp -----HHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred -----hccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 123579999999999988876432 45788999999999998765433
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=160.90 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=97.9
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-cccccEEEEcCCHHHHHhHHhhhhccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVNSARCKYCCK 127 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-~~~~~vlil~Pt~~La~q~~~~~~~~~~~ 127 (520)
..++++|.++++.+.+ ++++++.||||||||.++.++++......+ ..+.+++++.|+++++.|+++.+.+.
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~--- 132 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE--- 132 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT---
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH---
Confidence 3689999999998875 899999999999999988888887665432 23458999999999999965543221
Q ss_pred ccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 128 NIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
++...+..++....... ..
T Consensus 133 -----------------------------------~~~~~~~~~g~~~~~~~--------------------------~~ 151 (235)
T 3llm_A 133 -----------------------------------RGEEPGKSCGYSVRFES--------------------------IL 151 (235)
T ss_dssp -----------------------------------TTCCTTSSEEEEETTEE--------------------------EC
T ss_pred -----------------------------------hccccCceEEEeechhh--------------------------cc
Confidence 11111222221111000 00
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHH-HHHHhh-hhHHHHHHh
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAYQ-AWLPTVLQL 263 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l-~~~~~~-~~l~~i~~~ 263 (520)
....++|+|+||+++.+.+.. .++++++||+||||.+ .+.++. ..++.+...
T Consensus 152 ~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 152 PRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp CCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 113568999999999998875 3788999999999984 555544 345555543
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.76 E-value=1.8e-18 Score=166.56 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=94.1
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.|+++|.++++.++. +++.++++|||+|||.+++.++...+.. ...++||++|+++|+.|+++
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~~lil~Pt~~L~~q~~~---------- 175 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMAD---------- 175 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH---CSSEEEEECSSHHHHHHHHH----------
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHc---CCCeEEEEECCHHHHHHHHH----------
Confidence 899999999998876 5778999999999999998776665543 23479999999999999544
Q ss_pred ccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhc
Q 010028 130 FGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 209 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (520)
.+..+.......+..+.++..... ...
T Consensus 176 -----------------------------~l~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 202 (282)
T 1rif_A 176 -----------------------------DFVDYRLFSHAMIKKIGGGASKDD------------------------KYK 202 (282)
T ss_dssp -----------------------------HHHHHTSCCGGGEEECSTTCSSTT------------------------CCC
T ss_pred -----------------------------HHHHhcccccceEEEEeCCCcchh------------------------hhc
Confidence 444554444556677776654221 112
Q ss_pred cCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHH
Q 010028 210 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 251 (520)
Q Consensus 210 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~ 251 (520)
...+|+|+||+.+... ....+..+++||+||||++.+.
T Consensus 203 ~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~~ 240 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATGK 240 (282)
T ss_dssp TTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCHH
T ss_pred cCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCcc
Confidence 4568999999876432 2244678899999999998643
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.68 E-value=6.6e-17 Score=150.97 Aligned_cols=117 Identities=27% Similarity=0.289 Sum_probs=87.8
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..|+++|.+++..++. ++++++++|||+|||.+++.++... +.++++++|+++|+.|++++
T Consensus 92 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~-------- 152 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKER-------- 152 (237)
T ss_dssp CCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHH--------
T ss_pred CCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHH--------
Confidence 3899999999998775 5679999999999999987766541 45799999999999995444
Q ss_pred cccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccce-EEeccCccchHHHHHHHhhcccccccccCCchhHHHh
Q 010028 129 IFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 207 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (520)
+..+ +.. +..+.|+..
T Consensus 153 -------------------------------~~~~----~~~~v~~~~g~~~---------------------------- 169 (237)
T 2fz4_A 153 -------------------------------LGIF----GEEYVGEFSGRIK---------------------------- 169 (237)
T ss_dssp -------------------------------HGGG----CGGGEEEESSSCB----------------------------
T ss_pred -------------------------------HHhC----CCCeEEEEeCCCC----------------------------
Confidence 3332 445 666666543
Q ss_pred hccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHHHHHHHh
Q 010028 208 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 253 (520)
Q Consensus 208 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~~ 253 (520)
...+|+|+||+.+...... ....+++|||||||++.+..+
T Consensus 170 --~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~ 209 (237)
T 2fz4_A 170 --ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESY 209 (237)
T ss_dssp --CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTH
T ss_pred --CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHH
Confidence 2458999999998665542 124588999999999865443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.68 E-value=9.4e-17 Score=152.56 Aligned_cols=125 Identities=15% Similarity=0.230 Sum_probs=97.4
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhc-CCCceeEEEeccccCHHHHHHHHHHHHcC-Cce-EE
Q 010028 354 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VL 428 (520)
Q Consensus 354 ~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~-vL 428 (520)
....|...+..++... .+.++||||++...+..+...|... + +.+..+||.++..+|.++++.|+++ +.+ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 4467888888888876 7889999999999999999999873 5 6788899999999999999999998 676 78
Q ss_pred EEecccccCCCCCCCcEEEEccCCCCHHHHHHHHhhcccCCCCCcE--EEEEecc
Q 010028 429 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKD 481 (520)
Q Consensus 429 v~T~~~~~Gidl~~~~~VI~~~~p~s~~~~~Q~~GR~~R~~~~g~~--i~~~~~~ 481 (520)
++|.++++|+|++++++||+||+|+++..|.||+||++|.|+.+.| +.|+..+
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999999987765 4455554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.21 E-value=1e-06 Score=93.14 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=54.0
Q ss_pred HHHHHHHHC-CCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhH--HhHHHHHHHHhhhccccccEEEEcCCHHHH
Q 010028 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL--SYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (520)
Q Consensus 38 ~~~~~l~~~-~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~--~~ll~il~~l~~~~~~~~~vlil~Pt~~La 114 (520)
.+...+... .-....+.|.+|+..++. ++.+++.|++|||||. +++++.+..+.. ..+.++++++||...|
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--~~~~~vll~APTg~AA 209 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCS--SCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--cCCCeEEEEeCChhHH
Confidence 345555543 112236889999988775 7899999999999994 455555543321 2356899999999999
Q ss_pred HhHHhh
Q 010028 115 LQVNSA 120 (520)
Q Consensus 115 ~q~~~~ 120 (520)
.++.+.
T Consensus 210 ~~L~e~ 215 (608)
T 1w36_D 210 ARLTES 215 (608)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 996554
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.06 E-value=6.7e-06 Score=87.87 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=51.6
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCK 123 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~ 123 (520)
..+++.|.+|+..++. ...-.+|+||+|||||.+..- ++.++.. .+.++|+++||..-++++.+.+.+
T Consensus 188 ~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~-~I~~l~~---~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVE-IILQAVK---QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHH-HHHHHHH---TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHH-HHHHHHh---CCCeEEEEcCchHHHHHHHHHHHh
Confidence 3689999999998775 133578999999999987544 4444443 346899999999999997776544
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.94 E-value=6.4e-05 Score=79.80 Aligned_cols=70 Identities=24% Similarity=0.229 Sum_probs=54.4
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
...+++.|.+|+..++. +...+|+||+|||||.+.. .++..+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~-~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSA-TIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHH-HHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHH-HHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 34689999999998775 5678999999999998753 344555432 3568999999999999988877653
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=7.6e-05 Score=81.10 Aligned_cols=70 Identities=24% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 48 ~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
+..+++.|.+|+..++. +...+|.||+|||||.+..- ++..+... .+.++++++||...++++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~-~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHH-HHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHH-HHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34688999999988764 55689999999999987543 44444432 3458999999999999998887654
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.86 E-value=1.1e-05 Score=82.47 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=50.7
Q ss_pred CCCCCcchhhHHHHHhhhCCCCCC-CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 46 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 46 ~~~~~~~~~Q~~ai~~~~~~~~~~-~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
+.|..|++.|.+|+..+...+..+ ..++|.|+.|||||.+. ..+++.+...+ ..++++++||...+..+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~--~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG--ETGIILAAPTHAAKKIL 90 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT--CCCEEEEESSHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC--CceEEEecCcHHHHHHH
Confidence 357899999999999875533233 38999999999999754 44555555432 23699999998887763
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.83 E-value=0.00012 Score=79.51 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKY 124 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~ 124 (520)
..+++.|.+|+..++. +.-.+|+||+|||||.+. ..++..+... .+.++++++||...+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti-~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTS-ATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHH-HHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHH-HHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4689999999998765 566899999999999875 3455555542 3568999999999999988877654
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.62 E-value=7.5e-05 Score=78.12 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=47.1
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
.+++.|.+|+..+.. ++.++|.||+|||||.+. ..++..+.. .+.++++++||...+..+
T Consensus 189 ~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i-~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L 248 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTT-KAVADLAES---LGLEVGLCAPTGKAARRL 248 (574)
T ss_dssp TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHH-HHHHHHHHH---TTCCEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEecCcHHHHHHh
Confidence 689999999988764 678999999999999863 334444433 356899999999888773
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.33 E-value=0.00029 Score=75.33 Aligned_cols=89 Identities=17% Similarity=0.060 Sum_probs=65.0
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..+++-|.+|+.. .+..++|.|+.|||||.+.+--+...+...+.+..++|++++|+..+.++.+.+.+++...
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 4789999998752 2678999999999999986554444443333344689999999999999999988876543
Q ss_pred cccccchhhhhHHhhh
Q 010028 129 IFGLIADHSIAEMCVQ 144 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~ 144 (520)
. .......++.+|.+
T Consensus 82 ~-~~~~v~Tfhs~~~~ 96 (647)
T 3lfu_A 82 Q-GGMWVGTFHGLAHR 96 (647)
T ss_dssp C-TTCEEEEHHHHHHH
T ss_pred c-CCcEEEcHHHHHHH
Confidence 2 44455666666655
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.33 E-value=0.002 Score=61.18 Aligned_cols=123 Identities=15% Similarity=0.078 Sum_probs=86.9
Q ss_pred ccCCCcHHHHHHHHHhc--CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEE
Q 010028 353 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 430 (520)
Q Consensus 353 ~~~~~k~~~l~~~~~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (520)
.....|+..+..++... .+.++|||++.......+..++...+ +....+.|..... +.+. .++...+.+.
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~~-~~k~----~~~~~~i~Ll 176 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIKS-AAAA----NDFSCTVHLF 176 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEE
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchhh-hhhc----ccCCceEEEE
Confidence 34788988888888765 56799999999999999999998755 7888888885442 2211 2455666666
Q ss_pred ecccccCCC-----CCCCcEEEEccCCCCHHH-HHHHHhhcccCC--C--CCcEEEEEecchH
Q 010028 431 SDAMTRGMD-----VEGVNNVVNYDKPAYIKT-YIHRAGRTARAG--Q--LGRCFTLLHKDEV 483 (520)
Q Consensus 431 T~~~~~Gid-----l~~~~~VI~~~~p~s~~~-~~Q~~GR~~R~~--~--~g~~i~~~~~~~~ 483 (520)
|....-|++ +...+.||.||..+++.. .+|++-|+.|.+ + .-.++-++..+-.
T Consensus 177 tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 177 SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 777777776 667999999999999886 489888888873 2 3346666665443
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.27 E-value=0.00068 Score=72.73 Aligned_cols=90 Identities=13% Similarity=0.030 Sum_probs=66.6
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhccccccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNI 129 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~ 129 (520)
.+++-|.+|+.. .+.+++|.|+.|||||.+..--+...+...+....++|+++.|+..+.++.+.+.+.+....
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 578999998763 26789999999999999765545444443233456899999999999999999988765543
Q ss_pred ccccchhhhhHHhhhc
Q 010028 130 FGLIADHSIAEMCVQF 145 (520)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (520)
........++.+|.++
T Consensus 76 ~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 76 ARGLMISTFHTLGLDI 91 (673)
T ss_dssp TTTSEEEEHHHHHHHH
T ss_pred ccCCEEEeHHHHHHHH
Confidence 3345566777777663
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.99 E-value=0.0018 Score=69.92 Aligned_cols=89 Identities=20% Similarity=0.138 Sum_probs=64.9
Q ss_pred CCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccc
Q 010028 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKN 128 (520)
Q Consensus 49 ~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~ 128 (520)
..+++-|.+|+.. .+.+++|.|+.|||||.+..--+...+...+....++|+++.|+..|.++.+.+.+++...
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4799999998753 2578999999999999986554444443333345689999999999999999988876543
Q ss_pred cccccchhhhhHHhhh
Q 010028 129 IFGLIADHSIAEMCVQ 144 (520)
Q Consensus 129 ~~~~~~~~~~~~~~~~ 144 (520)
. .......++.+|.+
T Consensus 84 ~-~~~~v~Tfhs~~~~ 98 (724)
T 1pjr_A 84 A-EDVWISTFHSMCVR 98 (724)
T ss_dssp G-TTSEEEEHHHHHHH
T ss_pred c-cCcEEeeHHHHHHH
Confidence 2 23445666666666
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.51 E-value=0.021 Score=56.19 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=49.2
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
.|+|+|...+..+.. .+-+++..+-+.|||.+....++..+.. .++.++++++|++..|..+++.+
T Consensus 163 ~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~~i 228 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRT 228 (385)
T ss_dssp CCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHH
Confidence 789999998876532 3558999999999998765545443333 24568999999999998866553
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.12 E-value=0.011 Score=58.90 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=28.2
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhH
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~ 117 (520)
-.++.|+.|+|||... .+.+ .. .+.++++||++++.++
T Consensus 163 v~~I~G~aGsGKTt~I----~~~~-~~----~~~lVlTpT~~aa~~l 200 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI----LSRV-NF----EEDLILVPGRQAAEMI 200 (446)
T ss_dssp EEEEEECTTSCHHHHH----HHHC-CT----TTCEEEESCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHH----HHHh-cc----CCeEEEeCCHHHHHHH
Confidence 3678999999999853 2222 11 3689999999999883
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.09 E-value=0.0052 Score=54.88 Aligned_cols=40 Identities=23% Similarity=0.077 Sum_probs=26.8
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
|+=.++.+|.|+|||..++- .+.+.. ..+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~-~a~r~~---~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIR-RVRRTQ---FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHH---HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHH---HCCCEEEEEEeccC
Confidence 44456799999999987544 333333 35668999999865
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.04 E-value=0.011 Score=52.13 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=27.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
++=.++.||+|+|||..++- ++.++. ..+.+++++.|...
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~---~~g~kV~v~k~~~d 47 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAK---IAKQKIQVFKPEID 47 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHH---HTTCCEEEEEEC--
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHH---HCCCEEEEEEeccC
Confidence 45578899999999987543 444433 35668999998854
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.03 E-value=0.0059 Score=53.62 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=26.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
++-.++.||+|+|||..++- ++.++.. .+.+++++.|..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~---~g~~v~~~~~~~d 42 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKL---GKKKVAVFKPKID 42 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHH---TTCEEEEEEEC--
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHH---CCCeEEEEeeccc
Confidence 45578899999999987543 3333332 3457889888853
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.02 E-value=0.0056 Score=55.41 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=27.2
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
+.-.++.|++|+|||..++- ++.++. ..+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~---~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLE---YADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHH---HTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHH---hcCCEEEEEEecc
Confidence 45578899999999987544 343333 2456799988765
No 111
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.51 E-value=0.018 Score=65.89 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=55.0
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc--cccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~--~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
.+++-|.++|.. .+++++|.|+.|||||.+.+--++..+.... ....+++++++|+..+..+.+.+.+.+
T Consensus 10 ~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 789999998753 2789999999999999987665666555421 234579999999999999988877743
No 112
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.49 E-value=0.0082 Score=53.52 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=27.1
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
|.=.++.+|.|+|||...+- .+.+.. ..+.+++++.|..+
T Consensus 28 G~I~vitG~M~sGKTT~Llr-~~~r~~---~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIR-RLRRGI---YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHH---HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHH-HHHHHH---HcCCceEEEEeccC
Confidence 45568899999999976543 344443 24568999999865
No 113
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.42 E-value=0.074 Score=55.81 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=49.2
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhh
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSAR 121 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~ 121 (520)
.|+++|...+..+. ..+..++..+-|+|||.+....++..+... ++.+++++.|+...|..+++.+
T Consensus 163 ~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i 228 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRT 228 (592)
T ss_dssp CCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHH
Confidence 58999999887652 246689999999999987654444444432 4568999999999998865543
No 114
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.36 E-value=0.027 Score=49.42 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=27.1
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
++=.++.||+|+|||...+- .+.+.. ..+.+++++.|..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~-~i~n~~---~~~~kvl~~kp~~ 58 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMR-RVRRFQ---IAQYKCLVIKYAK 58 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHH---HTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHH-HHHHHH---HcCCeEEEEcccc
Confidence 56678899999999965433 333332 3456899999873
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.93 E-value=0.03 Score=50.48 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
++=.++.|+.|+|||..++-. +.+. ...+.+++++.|.++
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~-~~r~---~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRR-VRRF---QIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHH-HHHH---HTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHH-HHHH---HHCCCeEEEEeecCC
Confidence 555678999999999875443 3332 245678999998864
No 116
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.78 E-value=0.042 Score=53.13 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=31.0
Q ss_pred cchhhHHHHHhhhCCCCCCC---CEEEECCCCChhhHHhHHHHHHHHh
Q 010028 51 LFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~---~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+.|+|.+++..+...+.+++ .+++.||.|+|||..+.. +.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 46888888887765544443 489999999999986543 444443
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.51 E-value=0.036 Score=58.10 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=41.4
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
.++..|.+|++.+.... ....++.|+-|.|||.+.-+ +++.+. .+++|.+|+..-+..
T Consensus 175 ~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~lG~-~~a~~~------~~~~vtAP~~~a~~~ 232 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSALAGQ-LISRIA------GRAIVTAPAKASTDV 232 (671)
T ss_dssp SCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHHHHH-HHHHSS------SCEEEECSSCCSCHH
T ss_pred CCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHHHHH-HHHHHH------hCcEEECCCHHHHHH
Confidence 67899999999887743 23478999999999965433 333332 246888999775544
No 118
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.69 E-value=0.2 Score=54.01 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=66.8
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cccCCCCCCCcEEE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 447 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidl~~~~~VI 447 (520)
.+.+++|.+|++.-+...++.++... ..+..+..+||+++..++...++.+.+|+.+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 46789999999999988888877643 33588999999999999999999999999999999975 45678888888877
Q ss_pred E
Q 010028 448 N 448 (520)
Q Consensus 448 ~ 448 (520)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 4
No 119
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.64 E-value=0.57 Score=45.71 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.8
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...++|.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 578999999999999854
No 120
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.39 E-value=0.47 Score=47.02 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=64.8
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccc----cCCCCCCCcE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT----RGMDVEGVNN 445 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~----~Gidl~~~~~ 445 (520)
.+.++||.+|++.-+..+++.++..+..+..+..++|+.+..++....+.+..|+.+|+|+|+-.- .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 567899999999999999999998654568999999999999998899999999999999996421 1245556777
Q ss_pred EEE
Q 010028 446 VVN 448 (520)
Q Consensus 446 VI~ 448 (520)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.37 E-value=0.63 Score=41.08 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.6
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999854
No 122
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.30 E-value=0.29 Score=48.24 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.8
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999854
No 123
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.29 E-value=0.81 Score=44.50 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.7
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..++|.||+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999854
No 124
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.64 E-value=0.43 Score=45.56 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=17.7
Q ss_pred cccEEEeehHHHHHHHHhhhhHHHHHHh
Q 010028 236 HLCYLVVDETDRLLREAYQAWLPTVLQL 263 (520)
Q Consensus 236 ~~~~lViDEah~l~~~~~~~~l~~i~~~ 263 (520)
..+++++||+|.+........+..+++.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 4679999999987513334444444443
No 125
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.24 E-value=0.38 Score=45.77 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=14.3
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+++.||+|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999864
No 126
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.04 E-value=0.17 Score=43.75 Aligned_cols=18 Identities=28% Similarity=0.315 Sum_probs=15.8
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
++.+++.||+|+|||..+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999854
No 127
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.87 E-value=2.3 Score=35.80 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=51.7
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++..+..+++. +... ++.+..++|+.+
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~---------------------------------------L~~~----~~~~~~~hg~~~ 70 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDE---------------------------------------LDDL----GYPCDKIHGGMI 70 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHH---------------------------------------HHHT----TCCEEEECTTSC
T ss_pred CCCcEEEEECCHHHHHHHHHH---------------------------------------HHHc----CCcEEEEeCCCC
Confidence 345899999999999885443 3322 677888999887
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeeh
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 244 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDE 244 (520)
...+...+.. ......+|+|+|. . +. .++++..+++||.-+
T Consensus 71 ~~~r~~~~~~-----------------f~~g~~~vlv~T~-~----~~--~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 71 QEDRFDVMNE-----------------FKRGEYRYLVATD-V----AA--RGIDIENISLVINYD 111 (163)
T ss_dssp HHHHHHHHHH-----------------HHTTSCSEEEECG-G----GT--TTCCCSCCSEEEESS
T ss_pred HHHHHHHHHH-----------------HHcCCCeEEEECC-h----hh--cCCchhcCCEEEEeC
Confidence 6655443221 2234578999992 1 12 357788888888644
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.71 E-value=0.56 Score=45.81 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.4
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.++|.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999864
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.62 E-value=0.23 Score=41.30 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.++++.||+|+|||..+
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4688999999999999854
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.39 E-value=0.26 Score=43.40 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=22.0
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEE
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil 107 (520)
..+++.||+|+|||..+. .+...+.. .+.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~~---~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELAK---RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHHT---TTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH---cCCeEEEE
Confidence 679999999999998643 24443332 23345554
No 131
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.31 E-value=1.5 Score=49.61 Aligned_cols=79 Identities=11% Similarity=0.246 Sum_probs=65.2
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhc-CCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-ccccCCCCCCCcEEE
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 447 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidl~~~~~VI 447 (520)
.+.+++|.+|+..-+...++.++.. +..+..+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999999888888753 23357889999999999999999999999999999995 455568888888776
Q ss_pred E
Q 010028 448 N 448 (520)
Q Consensus 448 ~ 448 (520)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 132
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.12 E-value=1.2 Score=50.21 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=66.2
Q ss_pred cCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-ccc---CCCCCCCc
Q 010028 369 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTR---GMDVEGVN 444 (520)
Q Consensus 369 ~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~---Gidl~~~~ 444 (520)
..+.++||.+|++.-+..+++.++.++..+..+..+||+++..++....+.+..|+.+|+|+|+- +.. -+++.++.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 35678999999999999999999986655679999999999989999999999999999999953 211 14556788
Q ss_pred EEEE
Q 010028 445 NVVN 448 (520)
Q Consensus 445 ~VI~ 448 (520)
+||.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 133
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.88 E-value=0.4 Score=45.51 Aligned_cols=18 Identities=17% Similarity=-0.123 Sum_probs=14.9
Q ss_pred CCEEEECCCCChhhHHhH
Q 010028 70 RDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~l 87 (520)
...++.||.|+|||..+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 19 ISILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368999999999998653
No 134
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.48 E-value=0.33 Score=40.18 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.+.++++.||+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 367899999999999974
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.35 E-value=0.67 Score=43.91 Aligned_cols=43 Identities=12% Similarity=-0.098 Sum_probs=28.5
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
.| -++|.+|+|+|||..++-.+.+ +.+. ..+.+++++..-..+
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~-~~~~-g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSS-YMRQ-YPDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHH-HHHH-CTTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHH-HHhc-CCCceEEEEeccchh
Confidence 35 5889999999999876554433 3322 125578888765544
No 136
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=87.25 E-value=0.64 Score=52.94 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=47.9
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhh
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQ 144 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (520)
-+|.|+.|||||.+.+--+...+.. +..+.++++++|+.. .-++.+++.+.+.......+....++.+|.+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~-~~~~~~il~lVP~q~-TFt~~~rl~~~l~~~~~~~~~V~TFhsla~~ 74 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRR-APFGKPIIFLVPDQM-TFLMEYELAKTPDMGGMIRAQVFSFSRLAWR 74 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHH-CTTSSCEEEECCGGG-HHHHHHHHTCCSSCSEESSEEEECHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-CCCCCcEEEEecCcc-cHHHHHHHHHhhhhcceeeeEEecHHHHHHH
Confidence 3789999999999866555544433 334568999999864 4446666666665444445667777777766
No 137
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.20 E-value=3 Score=36.84 Aligned_cols=75 Identities=8% Similarity=0.250 Sum_probs=54.8
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCC--CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c-----ccCCCCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 442 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~--~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidl~~ 442 (520)
..++||.++++.-+..+++.++.... ++..+..++|+.+..+.. +.+.++..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 34899999999999999888877642 257889999988765543 3345567899999952 1 23467777
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
++++|.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 138
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=86.64 E-value=4 Score=34.68 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=51.3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
...++||.++++..+..+++. +.. .+..+..++|+.+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~---------------------------------------L~~----~~~~~~~~~g~~~ 69 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVE---------------------------------------MIQ----DGHQVSLLSGELT 69 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHH---------------------------------------HHT----TTCCEEEECSSCC
T ss_pred CCCCEEEEECCHHHHHHHHHH---------------------------------------HHH----cCCcEEEEeCCCC
Confidence 455899999999999885443 322 2677889999987
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEe
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 242 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 242 (520)
...+...+.. ......+|+|+|.- + ..++++..+++||.
T Consensus 70 ~~~R~~~~~~-----------------f~~g~~~vLvaT~~-----~--~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 70 VEQRASIIQR-----------------FRDGKEKVLITTNV-----C--ARGIDVKQVTIVVN 108 (175)
T ss_dssp HHHHHHHHHH-----------------HHTTSCSEEEECCS-----C--CTTTCCTTEEEEEE
T ss_pred HHHHHHHHHH-----------------HHcCCCeEEEEecc-----h--hcCCCcccCCEEEE
Confidence 7665443321 22346789999922 1 24577888888884
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.03 E-value=1.1 Score=37.24 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=23.5
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
.++.+.+.||+|+|||..+- ++...... .+.+++++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~--~i~~~~~~--~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ--AWVAQALE--AGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH--HHHHHHHT--TTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHH--HHHHHHHh--cCCcEEEEc
Confidence 57889999999999998532 33332222 234466653
No 140
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=85.69 E-value=5.1 Score=33.60 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=50.9
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++..++.+++. +.. .+..+..++|+.+
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~---------------------------------------L~~----~~~~~~~~~~~~~ 65 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTK---------------------------------------LRN----DKFTVSAIYSDLP 65 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHH---------------------------------------HHH----TTCCEEEECTTSC
T ss_pred CCCCEEEEECCHHHHHHHHHH---------------------------------------HHH----cCCCEEEEECCCC
Confidence 345899999999999884443 322 2567888899877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeeh
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 244 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDE 244 (520)
...+...+.. .......|+|+|.- +. .++++..+++||.-+
T Consensus 66 ~~~r~~~~~~-----------------f~~g~~~vlv~T~~-----~~--~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 66 QQERDTIMKE-----------------FRSGSSRILISTDL-----LA--RGIDVQQVSLVINYD 106 (165)
T ss_dssp HHHHHHHHHH-----------------HHTTSCSEEEEEGG-----GT--TTCCCCSCSEEEESS
T ss_pred HHHHHHHHHH-----------------HHcCCCEEEEEcCh-----hh--cCCCcccCCEEEEeC
Confidence 6655443221 22345789999922 12 357778888887643
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.47 E-value=0.48 Score=46.15 Aligned_cols=19 Identities=42% Similarity=0.538 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
....+++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999854
No 142
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=85.20 E-value=4.5 Score=35.69 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=51.3
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++.-++.+++. +... ++.+..++|+.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~---------------------------------------L~~~----~~~~~~lhg~~~ 66 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQG---------------------------------------LLRL----GHPAQALHGDLS 66 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHH---------------------------------------HHHH----TCCEEEECSSSC
T ss_pred CCCeEEEEeCCHHHHHHHHHH---------------------------------------HHHc----CCCEEEEECCCC
Confidence 355899999999998885443 3222 678888999988
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEe
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 242 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 242 (520)
...+...+.. ......+|+|+|.- +. .++++..+++||.
T Consensus 67 ~~~r~~~~~~-----------------f~~g~~~vlvaT~~-----~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 67 QGERERVLGA-----------------FRQGEVRVLVATDV-----AA--RGLDIPQVDLVVH 105 (212)
T ss_dssp HHHHHHHHHH-----------------HHSSSCCEEEECTT-----TT--CSSSCCCBSEEEE
T ss_pred HHHHHHHHHH-----------------HHCCCCeEEEecCh-----hh--cCCCCccCcEEEE
Confidence 7666544322 22345789999922 12 4578888888874
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=84.69 E-value=5.1 Score=39.82 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=22.3
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
-+++.+++|+|||....- +...+.. .+.+++++.
T Consensus 102 vIlivG~~G~GKTTt~~k-LA~~l~~---~G~kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK-LARYFQK---RGYKVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHT---TTCCEEEEE
T ss_pred EEEEECcCCCCHHHHHHH-HHHHHHH---CCCeEEEEe
Confidence 478899999999996533 3333332 345676665
No 144
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.48 E-value=5.4 Score=36.14 Aligned_cols=75 Identities=13% Similarity=0.266 Sum_probs=53.5
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC-CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----cc--cCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT--RGMDVE 441 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~--~Gidl~ 441 (520)
.+.++||.++++.-+..+++.++.... .+..+..++|+.+..+....+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 456799999999999999888876532 247788899988765443332 246899999952 22 356788
Q ss_pred CCcEEEE
Q 010028 442 GVNNVVN 448 (520)
Q Consensus 442 ~~~~VI~ 448 (520)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8888774
No 145
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=84.35 E-value=5.9 Score=33.53 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=51.7
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++..+..+++. +... ++.+..++|+.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~---------------------------------------L~~~----~~~~~~~hg~~~ 66 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQL---------------------------------------LVEQ----NFPAIAIHRGMP 66 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHH---------------------------------------HHHT----TCCEEEECTTSC
T ss_pred CCCcEEEEECCHHHHHHHHHH---------------------------------------HHhc----CCCEEEEECCCC
Confidence 345899999999999885443 3322 677888899877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeeh
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 244 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDE 244 (520)
...+...+.. .......|+|+|.- . ..++++..+++||.-+
T Consensus 67 ~~~r~~~~~~-----------------f~~g~~~vLvaT~~------~-~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 67 QEERLSRYQQ-----------------FKDFQRRILVATNL------F-GRGMDIERVNIAFNYD 107 (172)
T ss_dssp HHHHHHHHHH-----------------HHTTSCSEEEESSC------C-STTCCGGGCSEEEESS
T ss_pred HHHHHHHHHH-----------------HHCCCCcEEEECCc------h-hcCcchhhCCEEEEEC
Confidence 6655443221 22346789999932 1 2357788888888644
No 146
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.14 E-value=2.7 Score=37.46 Aligned_cols=75 Identities=8% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----c-ccCCCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEGV 443 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~-~~Gidl~~~ 443 (520)
.+.++||.++++.-+..+++.++.....+..+..++|+.+..++... +. ...+|+|+|.- + ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 46689999999999999999998876566788888887765443322 22 35799999952 1 235677788
Q ss_pred cEEEE
Q 010028 444 NNVVN 448 (520)
Q Consensus 444 ~~VI~ 448 (520)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87764
No 147
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.03 E-value=1.3 Score=43.88 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=22.0
Q ss_pred hhhHHHHHhhhCCCCCCCCEEEECCCCChhhHH
Q 010028 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 53 ~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~ 85 (520)
+.+..++..++. ..+.-++|.||||||||..
T Consensus 153 ~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 153 AHNHDNFRRLIK--RPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHHT--SSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHH--hcCCeEEEECCCCCCHHHH
Confidence 345556666543 2456689999999999985
No 148
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.98 E-value=0.93 Score=41.07 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=26.2
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.|.-++|.|++|+|||..++-.+.+.+.+. +..+++++-.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeeccc
Confidence 456789999999999986544344333332 3457777644
No 149
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.95 E-value=0.99 Score=42.81 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+.++++.||+|+|||..+. .+...+... .+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~~~--~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELSEK--KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHHHH--SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHh--cCCcEEEEE
Confidence 5789999999999998643 244433312 234566654
No 150
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.75 E-value=0.22 Score=47.79 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=22.7
Q ss_pred hHHHHHhhhCCCCCCCCEEEECCCCChhhHHh
Q 010028 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (520)
|.+++..+...+..+.++++.||+|+|||..+
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 44555444443344789999999999999854
No 151
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.17 E-value=1.3 Score=39.13 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHh
Q 010028 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (520)
..|.+.|.-.++ .+-.. ..++..++..+-..+.+++.||+|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 355555554443 44444 4455555553322345899999999999865
No 152
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.07 E-value=1.3 Score=39.18 Aligned_cols=45 Identities=16% Similarity=-0.073 Sum_probs=28.9
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
.++.++. .+..|.-+++.||+|+|||..+...+. . .+.+++++.-
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~----~---~~~~v~~i~~ 53 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL----L---SGKKVAYVDT 53 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH----H---HCSEEEEEES
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH----H---cCCcEEEEEC
Confidence 4555664 444567789999999999986543222 1 2346777653
No 153
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=82.99 E-value=7.8 Score=33.49 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=50.9
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
+.++||.++++.-++.+++. +... ++.+..++|+.+.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~---------------------------------------L~~~----g~~~~~lhg~~~~ 90 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEY---------------------------------------LLLK----GVEAVAIHGGKDQ 90 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHH---------------------------------------HHHH----TCCEEEECTTSCH
T ss_pred CCCEEEEECCHHHHHHHHHH---------------------------------------HHHc----CCcEEEEeCCCCH
Confidence 34799999999999885443 3222 6778889998876
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeeh
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 244 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDE 244 (520)
..+...+.. ......+|+|+|. .+. .++++..+++||.-+
T Consensus 91 ~~R~~~l~~-----------------F~~g~~~vLvaT~-----~~~--~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 91 EERTKAIEA-----------------FREGKKDVLVATD-----VAS--KGLDFPAIQHVINYD 130 (191)
T ss_dssp HHHHHHHHH-----------------HHHTSCSEEEECH-----HHH--TTCCCCCCSEEEESS
T ss_pred HHHHHHHHH-----------------HhcCCCEEEEEcC-----chh--cCCCcccCCEEEEeC
Confidence 655443221 2234678999992 222 347778888887643
No 154
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.98 E-value=7.2 Score=33.78 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=52.6
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----cc-cCCCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEGV 443 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~-~Gidl~~~ 443 (520)
.+.++||.+|++.-+..+++.++.... ...+..++|+.........+. ...+|+|+|.- +. ..+++.++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 145 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP-HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRV 145 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT-TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh-cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 356899999999999999999988643 367888888876654433332 25789999952 22 24667778
Q ss_pred cEEEE
Q 010028 444 NNVVN 448 (520)
Q Consensus 444 ~~VI~ 448 (520)
++||.
T Consensus 146 ~~iVi 150 (207)
T 2gxq_A 146 EVAVL 150 (207)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88774
No 155
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.83 E-value=2.9 Score=37.34 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=23.1
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+..+++.||+|+|||..+- .+...+.. .+..++++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~-~l~~~~~~---~~~~~~~~~ 87 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH-AACARANE---LERRSFYIP 87 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH-HHHHHHHH---TTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH---cCCeEEEEE
Confidence 6789999999999998543 23333332 233455554
No 156
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=82.57 E-value=1.6 Score=44.59 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=22.0
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHH
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~ 85 (520)
+.+.+.+.+...+. .+..++|.||||||||..
T Consensus 245 ~~~~~l~~l~~~v~---~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIE---HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHH---TTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 34444444444343 477899999999999984
No 157
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.39 E-value=4 Score=35.15 Aligned_cols=77 Identities=22% Similarity=0.153 Sum_probs=42.1
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++..+..+++. +.. .++.+..++|+.+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~---------------------------------------L~~----~g~~~~~lhg~~~ 81 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDF---------------------------------------LYH----EGYACTSIHGDRS 81 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHH---------------------------------------HHH----TTCCEEEEC----
T ss_pred CCCeEEEEECCHHHHHHHHHH---------------------------------------HHH----cCCceEEEeCCCC
Confidence 456899999999998884443 322 2677888888876
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEee
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 243 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViD 243 (520)
...+...+. ........|+|+|.- + . .++++..+++||.-
T Consensus 82 ~~~r~~~~~-----------------~f~~g~~~vLvaT~~-~----~--~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 82 QRDREEALH-----------------QFRSGKSPILVATAV-A----A--RGLDISNVKHVINF 121 (185)
T ss_dssp ----CHHHH-----------------HHHHTSSSEEEEEC-------------CCCSBSEEEES
T ss_pred HHHHHHHHH-----------------HHHcCCCeEEEEcCh-h----h--cCCCcccCCEEEEe
Confidence 554433221 122346789999922 1 1 34677778877763
No 158
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.04 E-value=1.3 Score=40.76 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.3
Q ss_pred CCCCCEEEECCCCChhhHH
Q 010028 67 LFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (520)
..|.-++|.||||||||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 3477899999999999985
No 159
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.93 E-value=1.7 Score=38.75 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=29.0
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
+++.++. .+..|.-++|.||+|+|||..+.. ++..+.. .+.+++++..
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~-l~~~~~~---~~~~v~~~~~ 59 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLH-FIAKGLR---DGDPCIYVTT 59 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHH-HHHHHHH---HTCCEEEEES
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHH-HHHHHHH---CCCeEEEEEc
Confidence 4455554 344567789999999999975433 3322222 2346777653
No 160
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=81.80 E-value=2.4 Score=42.85 Aligned_cols=75 Identities=15% Similarity=0.031 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecccccCCC
Q 010028 360 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 439 (520)
Q Consensus 360 ~~l~~~~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 439 (520)
+.+...++. .+.+++|.|.|...++++.+.|.+.+ +.+...... . .+. ...|.|+...++.|+.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~---i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~ 435 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIK---IAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFV 435 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGT---CCCEECSCG-G---------GCC--TTCEEEEESCCCSCEE
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcC---CCceecCch-h---------hcC--CCcEEEEEcccccCcc
Confidence 445554433 35789999999999999999999875 333332211 1 012 3356777788999999
Q ss_pred CCCCcEEEEcc
Q 010028 440 VEGVNNVVNYD 450 (520)
Q Consensus 440 l~~~~~VI~~~ 450 (520)
+|...++|+..
T Consensus 436 ~p~~klaVITE 446 (483)
T 3hjh_A 436 DTVRNLALICE 446 (483)
T ss_dssp ETTTTEEEEEH
T ss_pred cCCCCEEEEEc
Confidence 99888888754
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.67 E-value=1.1 Score=38.35 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999864
No 162
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=81.47 E-value=3.8 Score=36.60 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC--CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c-----ccCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVE 441 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~--~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidl~ 441 (520)
.+.++||.+++++-+..+++.++..+. .+..+..++|+.+..+....+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 356899999999999999998887642 257888999988776554433 35799999963 1 1345677
Q ss_pred CCcEEEE
Q 010028 442 GVNNVVN 448 (520)
Q Consensus 442 ~~~~VI~ 448 (520)
+++++|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777764
No 163
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.44 E-value=0.84 Score=42.06 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3678999999999999843
No 164
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.26 E-value=1.2 Score=44.77 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.++.+++.||+|+|||..+
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 3578999999999999865
No 165
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.23 E-value=1.3 Score=44.29 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=32.4
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
..+++|.|+||+|||... ..++..+.. .+..++|+=|.-++...
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~---~g~~viv~Dpkge~~~~ 96 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL---RGDRMVIVDPNGDMLSK 96 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH---TTCEEEEEEETTHHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH---CCCcEEEEeCCCchhHH
Confidence 578999999999999974 445555543 24568888898888654
No 166
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=80.90 E-value=1.8 Score=40.69 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999865
No 167
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.80 E-value=0.66 Score=43.72 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999854
No 168
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=80.65 E-value=2.1 Score=40.61 Aligned_cols=49 Identities=8% Similarity=-0.240 Sum_probs=33.1
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.++..+..|.-++|.|++|+|||..++-.+..... .+.++++++--
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g~~vl~~slE 105 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----NDDVVNLHSLE 105 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TTCEEEEEESS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEECC
Confidence 56667765666777999999999999765443333322 23468888744
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.64 E-value=0.98 Score=43.46 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++++.||+|+|||..+- .+...+.........++.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~-~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL-ALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCEEEECSTTSSHHHHHH-HHHHHHHHHHHHTTSEEEECSS
T ss_pred CEEEEECCCCCCHHHHHH-HHHHHhCCCcccccceEEEccc
Confidence 459999999999998643 2333332211122345556554
No 170
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.41 E-value=1.5 Score=51.84 Aligned_cols=51 Identities=20% Similarity=0.102 Sum_probs=33.5
Q ss_pred HHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHH
Q 010028 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 59 i~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~L 113 (520)
++.++. .+..++.+++.+|+|+|||..+...+.+.. ..+.+++|+.....+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~----~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ----REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH----TTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEEEccccc
Confidence 555554 233468899999999999987644333322 245678888876443
No 171
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.33 E-value=0.36 Score=49.19 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=22.1
Q ss_pred hHHHHHhhhCCCCCCCCEEEECCCCChhhHH
Q 010028 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~ 85 (520)
|.+++..+......+.++++.||+|+|||..
T Consensus 27 q~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 27 RSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 4444444444344578999999999999984
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.53 E-value=1.1 Score=38.19 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999854
No 173
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.99 E-value=0.86 Score=39.61 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=14.2
Q ss_pred CCEEEECCCCChhhHH
Q 010028 70 RDLCINSPTGSGKTLS 85 (520)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (520)
+.++|+||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999983
No 174
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.58 E-value=1.5 Score=41.31 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=14.2
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999854
No 175
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.41 E-value=6.1 Score=35.51 Aligned_cols=75 Identities=11% Similarity=0.214 Sum_probs=53.5
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----ccc-cCCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidl~~ 442 (520)
.+.++||.+|+++-+..+.+.++... ..+..+..++|+.+.......+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35679999999999998888776642 234788889998877655444332 578999995 222 2467788
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+.++|.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888774
No 176
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.22 E-value=1.2 Score=39.21 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.9
Q ss_pred CCCCCCCEEEECCCCChhhHHh
Q 010028 65 PGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~~ 86 (520)
.+..+.-+++.||+|+|||...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 4556888999999999999843
No 177
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.16 E-value=8 Score=33.48 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=51.7
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCC--CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----ccc-CCCCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMDVEG 442 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~--~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~-Gidl~~ 442 (520)
+.++||.+|++.-+..+++.++.... .+..+..++|+.+..+....+ .+..+|+|+|.- +.. ..++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45799999999999999888876542 257788899888765433221 356789999962 223 346677
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
++++|.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887764
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.12 E-value=3.4 Score=41.29 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
...+++.||+|+|||..+- .+...+... .++.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHH-CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEeeH
Confidence 4689999999999998543 233333322 23456666643
No 179
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=78.05 E-value=4.6 Score=41.32 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=53.1
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 432 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (520)
.+++||.+|++.-+....+.|+..+ ..+..+++..+..++..+...+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5789999999999999999998865 7888999999999998999999999999999985
No 180
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=77.84 E-value=2.7 Score=42.09 Aligned_cols=49 Identities=10% Similarity=-0.216 Sum_probs=33.5
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.++..+..|.-++|.|++|+|||..++-.+.+.+.. +.++++++--
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEECC
Confidence 466677656566778999999999998655434433322 4578888754
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=77.77 E-value=3.8 Score=38.83 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=23.4
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+..+++.||+|+|||..+- .+...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~---~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR---GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC---CCEEEEEE
Confidence 5789999999999998543 233333322 34566664
No 182
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.70 E-value=1.6 Score=42.56 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.7
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...++++||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999854
No 183
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=77.64 E-value=5.1 Score=35.90 Aligned_cols=76 Identities=11% Similarity=0.216 Sum_probs=47.0
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC-CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----cccc-CCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidl~~ 442 (520)
.+.++||.+|++.-+..+++.++..+. .+..+..++|+.... ...+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 456899999999999999998887642 346677777765433 223445556789999993 3333 366777
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887764
No 184
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.31 E-value=1.6 Score=53.89 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhc-cccccEEEEcCCHHH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDL 113 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~-~~~~~vlil~Pt~~L 113 (520)
|...+...+.+.|+ .|.+.+..=+-.+...+....-+++.||||+|||.++- ++...+..- .....+.++-|.---
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~~l~~~~~~~~~iNPKait 949 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIEQVDNIKSEAHVMDPKAIT 949 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHTTTTTCEEEEEEECTTTSC
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHHHhhCCCceEEEECCCCCc
Confidence 34556666667777 66666554433445544446679999999999999753 444443321 122346677787666
Q ss_pred HHhHHhhh
Q 010028 114 ALQVNSAR 121 (520)
Q Consensus 114 a~q~~~~~ 121 (520)
..|+|..+
T Consensus 950 ~~eLyG~~ 957 (3245)
T 3vkg_A 950 KDQLFGSL 957 (3245)
T ss_dssp HHHHHEEE
T ss_pred hhhhceee
Confidence 66666553
No 185
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=77.28 E-value=1.1 Score=39.36 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=14.7
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.++-+.|.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367899999999999984
No 186
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=77.27 E-value=7.2 Score=34.76 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=51.7
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c----cc--CCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR--GMDVE 441 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~--Gidl~ 441 (520)
.+.++||.+|++.-+..+++.++..+ ..+..+..++|+.+.......+ +..+|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 45689999999999999999888764 2347788889887655443322 46799999952 2 22 36677
Q ss_pred CCcEEEE
Q 010028 442 GVNNVVN 448 (520)
Q Consensus 442 ~~~~VI~ 448 (520)
+++++|.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7887764
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=77.10 E-value=1.2 Score=38.36 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|+-+.|.||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367789999999999984
No 188
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.08 E-value=1.6 Score=41.25 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
...+++|.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999853
No 189
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=76.99 E-value=11 Score=35.32 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=51.4
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
+.++||.++++.-++.+++. +.. .++.+..++|+.+.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~---------------------------------------L~~----~g~~~~~lhg~l~~ 64 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQG---------------------------------------LLR----LGHPAQALHGDMSQ 64 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHH---------------------------------------HHT----TTCCEEEECSCCCT
T ss_pred CCCEEEEECCHHHHHHHHHH---------------------------------------HHh----CCCCEEEEeCCCCH
Confidence 56899999999988884443 222 26788899999877
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEee
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 243 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViD 243 (520)
..+...+.. ......+|+|+|.- +. .++++..+++||.=
T Consensus 65 ~~r~~~~~~-----------------f~~g~~~vLVaT~v-----a~--~Gidi~~v~~VI~~ 103 (300)
T 3i32_A 65 GERERVMGA-----------------FRQGEVRVLVATDV-----AA--RGLDIPQVDLVVHY 103 (300)
T ss_dssp HHHHHHHHH-----------------HHHTSCCEEEECST-----TT--CSTTCCCCSEEEES
T ss_pred HHHHHHHHH-----------------hhcCCceEEEEech-----hh--cCccccceeEEEEc
Confidence 666544322 22345789999922 12 45788888888753
No 190
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.94 E-value=3.3 Score=41.45 Aligned_cols=50 Identities=12% Similarity=-0.126 Sum_probs=32.9
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.++..+..|.-++|.|++|+|||..++-.+...... .+.+++++..-
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~slE 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSLE 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEESS
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEECC
Confidence 456667556666778999999999998654433333222 24468887754
No 191
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=76.84 E-value=4.9 Score=41.83 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=52.4
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHH--HcCCceEEEEec
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 432 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f--~~g~~~vLv~T~ 432 (520)
.+++||.+|++.-+....+.|+..+ ..+..++|+++..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5689999999999999999998875 7899999999999998888888 467899999997
No 192
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=76.84 E-value=2.2 Score=38.40 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=25.8
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.|.-++|.||+|+|||..++-.+.. +.. .+.+++++.-.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~-~~~---~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN-GLK---MGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH-HHH---TTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh---cCCeEEEEEcc
Confidence 4677899999999999865433332 222 24468887644
No 193
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=76.69 E-value=2.1 Score=41.78 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.+..++|.||||||||..
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467799999999999985
No 194
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.40 E-value=0.38 Score=45.56 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.7
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999864
No 195
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=76.36 E-value=3.3 Score=47.14 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=43.1
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhc--------cccccEEEEcCCHHHHHhHHhhhhccc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQVNSARCKYC 125 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~--------~~~~~vlil~Pt~~La~q~~~~~~~~~ 125 (520)
...+|.|+-|||||.+...-++..+...+ ....++|+||=|++-|..+.+++++.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45599999999999987666666665321 234579999999999999988877754
No 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=76.13 E-value=1.2 Score=42.24 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=20.2
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.+.+++|.||+|+|||.+.- .++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 35779999999999998753 3555554
No 197
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=76.13 E-value=13 Score=36.22 Aligned_cols=76 Identities=21% Similarity=0.177 Sum_probs=50.6
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++..++.+++. +.. .+..+..++|+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~---------------------------------------L~~----~~~~~~~~h~~~~ 311 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDF---------------------------------------LYH----EGYACTSIHGDRS 311 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHH---------------------------------------HHH----TTCCEEEECTTSC
T ss_pred CCCeEEEEECCHHHHHHHHHH---------------------------------------HHH----CCCCeeEecCCCC
Confidence 456799999999988885443 322 2577888899887
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEe
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 242 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 242 (520)
...+...+.. ......+|+|+|. .+. .++++..+++||.
T Consensus 312 ~~~r~~~~~~-----------------f~~g~~~vlvaT~-----~~~--~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 312 QRDREEALHQ-----------------FRSGKSPILVATA-----VAA--RGLDISNVKHVIN 350 (417)
T ss_dssp HHHHHHHHHH-----------------HHHTSSCEEEECH-----HHH--TTSCCCCEEEEEE
T ss_pred HHHHHHHHHH-----------------HHcCCCCEEEECC-----hhh--cCCCcccCCEEEE
Confidence 6655443221 2234678999993 233 3477888888875
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=76.10 E-value=3.5 Score=39.50 Aligned_cols=49 Identities=12% Similarity=-0.083 Sum_probs=33.0
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.+...+..|.-++|.|++|+|||..++-.+..... .+.+++|++.-
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSlE 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSLE 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEESS
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCC
Confidence 45666666666777899999999999865443333222 34578888754
No 199
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.09 E-value=2.2 Score=41.28 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.9
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
+.-++|.||||||||..
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 55789999999999985
No 200
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=76.01 E-value=3.4 Score=41.43 Aligned_cols=50 Identities=10% Similarity=-0.032 Sum_probs=33.4
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.+...+..|.-++|.|++|+|||..++- ++..+... .+.+++++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~-ia~~~~~~--~g~~Vl~~s~E 241 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALN-IAQNVATK--TNENVAIFSLE 241 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHH-HHHHHHHH--SSCCEEEEESS
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHHh--CCCcEEEEECC
Confidence 5677776566677789999999999986544 33333221 24468888754
No 201
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=75.87 E-value=1.6 Score=38.28 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=23.6
Q ss_pred EEEECCCCChhhHHhHHHHHHHHh-hhccccccEEEEcCCHHH
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVLPTRDL 113 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~-~~~~~~~~vlil~Pt~~L 113 (520)
.+++|++|||||..+..-++.... +....+.+.++++.-..|
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 578999999999965443333211 111123266666654333
No 202
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.62 E-value=2.2 Score=41.28 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.8
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
++.+++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 468999999999999864
No 203
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.01 E-value=32 Score=30.73 Aligned_cols=121 Identities=11% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c----cc-CCCCCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR-GMDVEGV 443 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~-Gidl~~~ 443 (520)
+.++||.+|+++-+..+++.++..+ ..+..+..++|+.+.......+ ....+|+|+|.- + .. .+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 3589999999999999988887653 2346778888887665433222 346799999953 2 12 3577778
Q ss_pred cEEEEccCC-----CCHHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcC
Q 010028 444 NNVVNYDKP-----AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 495 (520)
Q Consensus 444 ~~VI~~~~p-----~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 495 (520)
+++|.-... .....+...+.+.......+.-+++++..--..+.++.+.+.+
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 877642211 1123333333332222111334555554433445556555543
No 204
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=74.52 E-value=1.4 Score=38.54 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+..+++.|++|+|||..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 3678999999999999854
No 205
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=74.50 E-value=1.5 Score=40.66 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
....+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3577999999999999854
No 206
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.28 E-value=1.5 Score=39.95 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.++++||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999854
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.27 E-value=1.5 Score=41.21 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.++.+++.||+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3677999999999999854
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=74.25 E-value=1.6 Score=36.92 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=15.0
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
+..+.|.||+|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999984
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.11 E-value=1.2 Score=42.84 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.7
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+++.||+|+|||..+
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999864
No 210
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.98 E-value=3.7 Score=38.32 Aligned_cols=49 Identities=8% Similarity=-0.069 Sum_probs=30.4
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcC
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~P 109 (520)
+++.+.-.+..|.-++|.||+|+|||..+.. ++..+... .+.+++++..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~-ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQ-QALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHH-HHHHHHHT--SCCCEEEEES
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHH-HHHHHHHH--cCCeEEEEeC
Confidence 4555555555678889999999999985433 22222211 2336777654
No 211
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=73.96 E-value=14 Score=33.53 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=53.0
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----ccc--cCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT--RGMDVE 441 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidl~ 441 (520)
.+.++||.+|++.-+..+++.++... ..+..+..++|+......... +..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 45679999999999999999888754 234677788888766544332 3333 79999994 122 246788
Q ss_pred CCcEEEE
Q 010028 442 GVNNVVN 448 (520)
Q Consensus 442 ~~~~VI~ 448 (520)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888774
No 212
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=73.83 E-value=1.7 Score=38.79 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.5
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..++|.||+|+|||..+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999854
No 213
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.33 E-value=2 Score=36.63 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+..+++.|++|+|||...
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 3578999999999999854
No 214
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.33 E-value=1.4 Score=37.10 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.0
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+++.||+|||||..+
T Consensus 4 I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999853
No 215
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.27 E-value=1.6 Score=38.07 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 467788999999999984
No 216
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=73.25 E-value=9 Score=40.42 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=54.9
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++|+..++.+++. +... ++++..++|+.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~---------------------------------------L~~~----gi~~~~lh~~~~ 480 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDY---------------------------------------LKEI----GIKVNYLHSEIK 480 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHH---------------------------------------HHHT----TCCEEEECTTCC
T ss_pred cCCeEEEEECCHHHHHHHHHH---------------------------------------HHhc----CCCeEEEeCCCC
Confidence 456899999999998884443 3322 667788888877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 247 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 247 (520)
...+...+.. ......+|+|||.- + ..++++..+++||+-+++.
T Consensus 481 ~~~R~~~l~~-----------------f~~g~~~VLVaT~~-----l--~~GlDip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 481 TLERIEIIRD-----------------LRLGKYDVLVGINL-----L--REGLDIPEVSLVAILDADK 524 (661)
T ss_dssp HHHHHHHHHH-----------------HHHTSCSEEEESCC-----C--STTCCCTTEEEEEETTTTC
T ss_pred HHHHHHHHHH-----------------HhcCCeEEEEecch-----h--hCCcccCCCCEEEEeCccc
Confidence 6655443221 12245789999831 1 2458888999999988764
No 217
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=73.15 E-value=1.6 Score=38.57 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3667889999999999853
No 218
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.13 E-value=2.6 Score=40.50 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=14.1
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+++.||+|+|||..+
T Consensus 38 ~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999854
No 219
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.95 E-value=1.5 Score=41.04 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.8
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999854
No 220
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=72.74 E-value=2.8 Score=39.51 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=24.9
Q ss_pred HHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 57 ~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.++..+--.+..|+-+.|.||+|+|||.. +-++..+.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 35544444455678899999999999984 33444444
No 221
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.63 E-value=2.7 Score=39.93 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.++++||+|+|||..+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999854
No 222
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.58 E-value=1.6 Score=37.43 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.4
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.|++|||||..+
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999854
No 223
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.41 E-value=1.5 Score=38.43 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
++-++|.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 566899999999999754
No 224
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.10 E-value=1.5 Score=43.61 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+-+++.||+|+|||..+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 477999999999999853
No 225
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.08 E-value=15 Score=36.40 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=54.7
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cc-----cCCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT-----RGMDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~-----~Gidl~~ 442 (520)
.++++||.||++.-+..+++.+.... .+...+..++|+....++..... ..+|+|+|.- +. ..+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 67899999999999999999988763 24458999999998876654432 4689999842 22 1456677
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 887764
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.92 E-value=1.5 Score=37.93 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+++.||+|+|||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467789999999999984
No 227
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=71.90 E-value=2.7 Score=51.42 Aligned_cols=83 Identities=16% Similarity=0.016 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHCCCCCcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh-ccccccEEEEcCCHHH
Q 010028 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDL 113 (520)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~-~~~~~~vlil~Pt~~L 113 (520)
+.+.+.+.+.+.++ .+.+.+..-+-.+...+.....+++.||||+|||.++- +++..+.. ......+.++.|.---
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~--~La~al~~l~~~~~~~~~inpk~~t 966 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK--TVIDAMAIFDGHANVVYVIDTKVLT 966 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH--HHHHHHHHHTCCEEEEEEECTTTSC
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH--HHHHHHHHhcCCCceEEEeCCCCCC
Confidence 44556677777776 56666543333333333346779999999999999753 33333221 1122345566676444
Q ss_pred HHhHHhh
Q 010028 114 ALQVNSA 120 (520)
Q Consensus 114 a~q~~~~ 120 (520)
..|++..
T Consensus 967 ~~el~G~ 973 (2695)
T 4akg_A 967 KESLYGS 973 (2695)
T ss_dssp HHHHTTE
T ss_pred HHHhcce
Confidence 5555443
No 228
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=71.88 E-value=3.9 Score=38.54 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+.-+.+.||+|+|||.. +..+..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHHh--cCCEEEEEe
Confidence 45578899999999984 3445544443 344666654
No 229
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.81 E-value=1.7 Score=42.70 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=15.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+-+|+.||+|+|||..+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 477999999999999853
No 230
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.78 E-value=6.6 Score=38.24 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=26.4
Q ss_pred cchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (520)
|-..=.++|+.++ ++..|+.+.|.+|+|+|||...
T Consensus 157 ~~~tGiraID~~~-pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLAS-PIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHS-CCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeee-eecCCcEEEEecCCCCChhHHH
Confidence 4444566777544 5667899999999999999854
No 231
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=71.78 E-value=1.5 Score=40.50 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...++++||+|+|||..+
T Consensus 64 ~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 367999999999999864
No 232
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.75 E-value=2.5 Score=37.37 Aligned_cols=30 Identities=23% Similarity=0.014 Sum_probs=22.5
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCChhhHH
Q 010028 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 52 ~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~ 85 (520)
+..|..+++.+- .|.-+.|.||+|+|||..
T Consensus 9 ~~g~~~~l~~i~----~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAID----TNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHH----HCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhcc----CCCEEEEECCCCCCHHHH
Confidence 344566676653 378889999999999984
No 233
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=71.65 E-value=2.5 Score=40.40 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||+|+|||..+
T Consensus 55 ~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999854
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=71.60 E-value=2 Score=41.03 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.5
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
+-++|.||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999854
No 235
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.53 E-value=3.3 Score=40.09 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|..++|.||||+|||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 488999999999999984
No 236
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=71.33 E-value=1.6 Score=39.85 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.2
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999854
No 237
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=71.22 E-value=4 Score=39.35 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=31.0
Q ss_pred HHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.++. .+..|.-++|.+|+|+|||..++..+. .+.. .+.+++++.-.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~-~~~~---~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA-NAQA---AGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH-HHHH---TTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH-HHHh---CCCeEEEEECC
Confidence 3455555 333467789999999999986544333 3332 24568887654
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=71.14 E-value=3.7 Score=36.05 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.4
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
+.-+.|.||+|||||..
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45678899999999984
No 239
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.10 E-value=6.9 Score=35.93 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCCCcchhhHH-HHHhhhCCCCCCC-CEEEECCCCChhhHHhH
Q 010028 37 PRLKVALQNMGISSLFPVQVA-VWQETIGPGLFER-DLCINSPTGSGKTLSYA 87 (520)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~Q~~-ai~~~~~~~~~~~-~~li~apTGsGKT~~~l 87 (520)
..+.+.|...|+. +.+-. ++..++......+ .+++.||+|+|||..+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3677777766663 33322 2444454321223 48999999999998653
No 240
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=70.93 E-value=1.8 Score=40.91 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.0
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.-++|.||||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34678999999999854
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=70.91 E-value=1.9 Score=36.74 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.9
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356889999999999854
No 242
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=70.88 E-value=1.5 Score=41.10 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..++++||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999854
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.69 E-value=2.2 Score=37.38 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.++-++|.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 477889999999999984
No 244
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.56 E-value=6.2 Score=34.79 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=46.8
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc------ccCCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TRGMDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~------~~Gidl~~ 442 (520)
.+.++||.++++.-+..+++.++... ..+..+..++|+.+..+....+ .+.+|+|+|.-. ....++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999999999988887653 2357788888887654433222 237899999531 23466777
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887764
No 245
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=70.35 E-value=4.5 Score=39.59 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
.+.+++|.||||+|||...-. ++..+.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH---CCCEEEEEeCCcC
Confidence 367899999999999986533 3333332 3457888777644
No 246
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=70.35 E-value=2.9 Score=43.55 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.9
Q ss_pred CEEEECCCCChhhHH
Q 010028 71 DLCINSPTGSGKTLS 85 (520)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (520)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.29 E-value=1.9 Score=40.66 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.6
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-++|.||||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4678999999999854
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.19 E-value=4.2 Score=38.15 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=22.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
++-+.+.+|+|+|||..... +...... ..+.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~--LA~~l~~-~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK--LAAISML-EKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH--HHHHHHH-TTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHH--HHHHHHH-hcCCEEEEEe
Confidence 45688899999999986433 3322221 1244666664
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=70.14 E-value=2.2 Score=36.83 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.6
Q ss_pred CCEEEECCCCChhhHH
Q 010028 70 RDLCINSPTGSGKTLS 85 (520)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (520)
+-+.|.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999984
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=70.12 E-value=5 Score=34.95 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=27.4
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
...+++..++|.|||.+++--++..+- .+.+|+|+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g----~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG----HGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH----TTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEE
Confidence 467999999999999988665555442 456888884
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.03 E-value=4.5 Score=38.07 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+.-+.+.||+|+|||.. +..+..+... .+.++.+..
T Consensus 100 g~vi~lvG~nGsGKTTl--l~~Lag~l~~--~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS--LGKLAHRLKN--EGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHHHH--TTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHH--HHHHHHHHHH--cCCeEEEEe
Confidence 44578899999999985 3344444433 245677664
No 252
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=69.95 E-value=38 Score=34.56 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=53.6
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++.-++.+++.+ ..... .+..+..++|+.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L---------------------------------------~~~~~-~~~~v~~~h~~~~ 377 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSIL---------------------------------------KNEFK-KDLPILEFHGKIT 377 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHH---------------------------------------HHHHT-TTSCEEEESTTSC
T ss_pred CCCcEEEEcCcHHHHHHHHHHH---------------------------------------HHhcc-CCceEEEecCCCC
Confidence 4568999999999998855443 22211 2577888899887
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeeh
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 244 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDE 244 (520)
...+...+. .......+|+|+|.- +. .++++..+++||.-.
T Consensus 378 ~~~R~~~~~-----------------~f~~g~~~vLvaT~~-----~~--~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 378 QNKRTSLVK-----------------RFKKDESGILVCTDV-----GA--RGMDFPNVHEVLQIG 418 (563)
T ss_dssp HHHHHHHHH-----------------HHHHCSSEEEEECGG-----GT--SSCCCTTCCEEEEES
T ss_pred HHHHHHHHH-----------------HHhcCCCCEEEEcch-----hh--cCCCcccCCEEEEEC
Confidence 666544322 122346789999932 22 458888898888655
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=69.82 E-value=2.4 Score=36.43 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..+++.|++|||||.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999854
No 254
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=69.78 E-value=4.9 Score=40.84 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=26.3
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
+..++|.|+||||||...-..+...+........+++++=|..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 5789999999999998654333333333222233455555653
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=69.74 E-value=2.2 Score=37.23 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.-+.+.||+|||||...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677889999999999843
No 256
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=69.67 E-value=1.9 Score=39.46 Aligned_cols=15 Identities=47% Similarity=0.326 Sum_probs=13.1
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
++|.||+|||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678999999999854
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.61 E-value=2 Score=36.24 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=13.5
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-++|.|+.|+|||..+
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999854
No 258
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=69.22 E-value=20 Score=34.69 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=50.6
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++.-+..+++.+ ... +..+..++|+.+
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L---------------------------------------~~~----~~~~~~~~~~~~ 301 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAEL---------------------------------------SKE----GHQVALLSGEMM 301 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHH---------------------------------------HHT----TCCCEEECTTSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHH---------------------------------------HhC----CCeEEEecCCCC
Confidence 3457999999999888854443 222 567888899887
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEe
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 242 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 242 (520)
...+...+.. ......+|+|+|. .+. .++++..+++||.
T Consensus 302 ~~~r~~~~~~-----------------f~~g~~~vlv~T~-----~~~--~Gidip~~~~Vi~ 340 (412)
T 3fht_A 302 VEQRAAVIER-----------------FREGKEKVLVTTN-----VCA--RGIDVEQVSVVIN 340 (412)
T ss_dssp HHHHHHHHHH-----------------HHTTSCSEEEECG-----GGT--SSCCCTTEEEEEE
T ss_pred HHHHHHHHHH-----------------HHCCCCcEEEEcC-----ccc--cCCCccCCCEEEE
Confidence 6665443321 2234578999993 222 4588888988884
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.21 E-value=1.8 Score=41.17 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467999999999999854
No 260
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=69.04 E-value=2.2 Score=38.07 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.1
Q ss_pred CCCCCCCEEEECCCCChhhHH
Q 010028 65 PGLFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~ 85 (520)
.+-.|.-+.|.||+|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 344578899999999999984
No 261
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=69.01 E-value=3.9 Score=38.87 Aligned_cols=54 Identities=13% Similarity=-0.105 Sum_probs=31.2
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh--ccccccEEEEcCCH
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTR 111 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~--~~~~~~vlil~Pt~ 111 (520)
.++.++. .+..|.-++|.||+|+|||..++-.+....... +..+.+++++.-..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4555553 233356689999999999986544333221110 01145788887543
No 262
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.98 E-value=1.9 Score=42.71 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.4
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+-++++||+|+|||..+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 466999999999999854
No 263
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=68.76 E-value=4.5 Score=41.11 Aligned_cols=49 Identities=6% Similarity=-0.141 Sum_probs=32.0
Q ss_pred HHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 59 i~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
++.++..+..|.-++|.|++|+|||..++-.+.+.... .+.++++++--
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E 280 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLE 280 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESS
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEecc
Confidence 45556555567778999999999998654433332221 14578888754
No 264
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.73 E-value=2 Score=42.80 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+-+|+.||+|+|||..+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 477999999999999854
No 265
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=68.65 E-value=15 Score=38.83 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=53.9
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++|+..++.+++. +... ++++..++|+.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~---------------------------------------L~~~----gi~~~~lh~~~~ 474 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSF---------------------------------------LVEH----GIRARYLHHELD 474 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHH---------------------------------------HHHT----TCCEEEECTTCC
T ss_pred cCCEEEEEECCHHHHHHHHHH---------------------------------------HHhc----CCCceeecCCCC
Confidence 456899999999999884443 3322 567778888877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehHHH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 247 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 247 (520)
...+...+.. ......+|+|||.- + ..++++..+++||+=+++.
T Consensus 475 ~~~R~~~~~~-----------------f~~g~~~VLvaT~~-----l--~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 475 AFKRQALIRD-----------------LRLGHYDCLVGINL-----L--REGLDIPEVSLVAILDADK 518 (664)
T ss_dssp HHHHHHHHHH-----------------HHTTSCSEEEESCC-----C--CTTCCCTTEEEEEETTTTS
T ss_pred HHHHHHHHHH-----------------hhcCCceEEEccCh-----h--hcCccCCCCCEEEEeCCcc
Confidence 6655443221 22245789999821 1 2458888899998887753
No 266
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=68.52 E-value=20 Score=34.45 Aligned_cols=75 Identities=8% Similarity=0.250 Sum_probs=54.9
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCC--CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c-----ccCCCCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 442 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~--~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidl~~ 442 (520)
+.++||.||++.-+..+++.++.... ++..+..++|+.+...... .+..+..+|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999999888877532 2578999999887655443 345577899999953 2 23456777
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 887774
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=68.39 E-value=2.2 Score=36.28 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.4
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3688999999999853
No 268
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.39 E-value=4.4 Score=38.64 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.+..+.|.||||+|||.
T Consensus 170 ~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HTCCEEEEESTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47899999999999998
No 269
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.24 E-value=2.6 Score=37.46 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|+-+.|.||+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999984
No 270
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=68.21 E-value=2.6 Score=36.66 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999854
No 271
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=67.92 E-value=1.6 Score=45.78 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=21.9
Q ss_pred hHHHHHhhhCCCCCCCCEEEECCCCChhhHHh
Q 010028 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 55 Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (520)
|..+++.+...+..+..+++.||+|+|||..+
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHH
Confidence 34444433333335789999999999999854
No 272
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=67.78 E-value=5.9 Score=38.24 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=31.8
Q ss_pred HHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 58 ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
.++.++. .+..+.-++|.+++|+|||..++-.+. .+.. .+.+++|+....
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~-~~~~---~g~~vlyid~E~ 101 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA-AAQR---EGKTCAFIDAEH 101 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH-HHHH---TTCCEEEEESSC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH-HHHH---CCCeEEEEeCCC
Confidence 4555554 333456789999999999987644333 3332 244688887643
No 273
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=67.41 E-value=1.8 Score=37.19 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.1
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..+++.|++|||||..+
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 274
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=67.32 E-value=10 Score=35.48 Aligned_cols=71 Identities=10% Similarity=0.176 Sum_probs=49.5
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCC--CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEeccc------c-cCCCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------T-RGMDVE 441 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~--~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~------~-~Gidl~ 441 (520)
+.++||.+|+++-+..+++.++..+. .+..+....|+....... ....+|+|+|+-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999999888877643 346777777665432111 3466899999632 1 357788
Q ss_pred CCcEEEE
Q 010028 442 GVNNVVN 448 (520)
Q Consensus 442 ~~~~VI~ 448 (520)
.+.++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888875
No 275
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=67.32 E-value=2.5 Score=40.87 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999854
No 276
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=67.28 E-value=2.2 Score=40.40 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.7
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 478999999999999854
No 277
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=66.82 E-value=5.5 Score=38.57 Aligned_cols=50 Identities=18% Similarity=0.038 Sum_probs=32.1
Q ss_pred HHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 58 ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
.++.++. .+..+.-++|.+++|+|||..++- ++..+.. .+.+++|+..-.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~-la~~~~~---~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALA-IVAQAQK---AGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHH-HHHHHHH---TTCCEEEEESSC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHH-HHHHHHH---CCCeEEEEECCC
Confidence 4566665 344456789999999999986544 3333332 244688887543
No 278
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=66.61 E-value=3.6 Score=36.84 Aligned_cols=30 Identities=10% Similarity=-0.157 Sum_probs=21.0
Q ss_pred HHhhhC-CCCCCCCEEEECCCCChhhHHhHH
Q 010028 59 WQETIG-PGLFERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 59 i~~~~~-~~~~~~~~li~apTGsGKT~~~ll 88 (520)
++.++. .+..|.-+.|.+|+|+|||..+..
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHH
Confidence 445553 233467789999999999986544
No 279
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=66.22 E-value=51 Score=33.86 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=54.0
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++.-++.+++.+ ..... .+..+..++|+.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L---------------------------------------~~~~~-~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSIL---------------------------------------KNEFK-KDLPILEFHGKIT 326 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHH---------------------------------------HHHHT-TTSCEEEESTTSC
T ss_pred CCCcEEEECCcHHHHHHHHHHH---------------------------------------HHhhc-CCCcEEEecCCCC
Confidence 4568999999999998855443 22211 2577888899887
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeehH
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 245 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 245 (520)
...+...+. .......+|+|+|.- +. .++++..+++||.-..
T Consensus 327 ~~~R~~~~~-----------------~F~~g~~~vLVaT~~-----~~--~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 327 QNKRTSLVK-----------------RFKKDESGILVCTDV-----GA--RGMDFPNVHEVLQIGV 368 (579)
T ss_dssp HHHHHHHHH-----------------HHHHCSSEEEEECGG-----GT--SSCCCTTCCEEEEESC
T ss_pred HHHHHHHHH-----------------HhhcCCCeEEEEcch-----hh--cCCCcccCCEEEEcCC
Confidence 666544322 122346789999932 22 4588888988886553
No 280
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=66.19 E-value=1.9 Score=43.47 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.8
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999865
No 281
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=66.09 E-value=27 Score=33.47 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=51.2
Q ss_pred ccccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccc
Q 010028 100 RCLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSS 179 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 179 (520)
.+.++||.++++.-++.+++. +... +..+..++|+.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~---------------------------------------l~~~----~~~~~~~~~~~~ 278 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGK---------------------------------------LKSE----GHEVSILHGDLQ 278 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHH---------------------------------------HHHT----TCCCEEECTTSC
T ss_pred cCCCEEEEeCCHHHHHHHHHH---------------------------------------HHhc----CCcEEEeCCCCC
Confidence 345799999999988885443 3222 567888888877
Q ss_pred hHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeeh
Q 010028 180 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 244 (520)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDE 244 (520)
...+...+.. ......+|+|+|. .+. .++++..+++||.-+
T Consensus 279 ~~~r~~~~~~-----------------f~~g~~~vlv~T~-----~~~--~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 279 TQERDRLIDD-----------------FREGRSKVLITTN-----VLA--RGIDIPTVSMVVNYD 319 (395)
T ss_dssp HHHHHHHHHH-----------------HHTTSCCEEEECG-----GGS--SSCCCTTEEEEEESS
T ss_pred HHHHHHHHHH-----------------HHCCCCCEEEECC-----hhh--cCCCcccCCEEEEcC
Confidence 6655443221 2234578999993 222 458888899888644
No 282
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=65.80 E-value=6 Score=40.63 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=28.0
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
..+++|.|.||||||.+.-..++..+........+++++=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4679999999999998754434443333322344566666764
No 283
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.79 E-value=5.4 Score=38.43 Aligned_cols=50 Identities=16% Similarity=-0.057 Sum_probs=30.8
Q ss_pred HHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCH
Q 010028 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (520)
Q Consensus 58 ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~ 111 (520)
.++.++. .+..|.-++|.+|+|+|||..++- ++..+.. .+.+++++....
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~-la~~~~~---~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALH-AIAEAQK---MGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHH-HHHHHHH---TTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHH-HHHHHHh---cCCeEEEEeccc
Confidence 3455554 233356688999999999986533 4433332 345688886543
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=65.73 E-value=2.8 Score=36.53 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.4
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+.|.||+|+|||..+
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567889999999999853
No 285
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=65.71 E-value=2.3 Score=36.10 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.8
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
|.-+.+.||+|||||..
T Consensus 9 gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56688999999999984
No 286
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=65.46 E-value=6.1 Score=38.17 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=23.4
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+.-+.+.||+|+|||.. +..+..+... .+.++++..
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l~~--~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRLKN--EGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHHHH--TTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhccc--cCCEEEEec
Confidence 34578899999999985 3344444443 245676664
No 287
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=65.32 E-value=1.9 Score=39.67 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.3
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999854
No 288
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.09 E-value=2.7 Score=41.56 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+-+|+.||+|+|||..+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 467999999999999853
No 289
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.85 E-value=5.1 Score=35.31 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCCC-----ceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----cccc-CCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMD 439 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~~-----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gid 439 (520)
+.++||.++++.-+..+++.++..... +..+..++|+.+..+..+. + ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999999988887765321 4677888888754322111 1 23578999995 2222 356
Q ss_pred CCCCcEEEE
Q 010028 440 VEGVNNVVN 448 (520)
Q Consensus 440 l~~~~~VI~ 448 (520)
+..++++|.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677777664
No 290
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=64.81 E-value=2.7 Score=38.24 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
+.+++.||+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999843
No 291
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=64.78 E-value=2.7 Score=41.04 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=26.1
Q ss_pred CcchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.... .++.|.+ ++..|.||||||...
T Consensus 74 ~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 74 GERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 366678888776443 2345655 566999999999874
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=64.75 E-value=2.9 Score=35.86 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.0
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|++|||||..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=64.67 E-value=2.7 Score=36.16 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.9
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|++|+|||..+
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456789999999999854
No 294
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.60 E-value=2.9 Score=40.43 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999854
No 295
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.59 E-value=2.3 Score=42.47 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
-+-+|+.||+|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 477999999999999853
No 296
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.55 E-value=2.6 Score=41.97 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999854
No 297
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=64.53 E-value=3.4 Score=39.24 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.4
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..++|.||||+|||..+
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999854
No 298
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=64.32 E-value=5.8 Score=37.79 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=23.0
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+.-+.+.||+|+|||.. +..+..+... .+.++++..
T Consensus 129 g~vi~lvG~nGaGKTTl--l~~Lag~l~~--~~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT--IAKLANWLKN--HGFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHH--HHHHHHHHHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHHHh--cCCEEEEEe
Confidence 44578899999999984 3344444443 344666653
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=63.93 E-value=2.7 Score=35.64 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.1
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..+.+.|++|+|||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999853
No 300
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=63.83 E-value=6.8 Score=37.56 Aligned_cols=54 Identities=9% Similarity=-0.122 Sum_probs=31.3
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhh--ccccccEEEEcCCH
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTR 111 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~--~~~~~~vlil~Pt~ 111 (520)
.++.++. .+..|.-++|.||+|+|||..++-.+....... +..+.+++|+.-..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3556664 233355678999999999986544333211210 01345788887544
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=63.72 E-value=6.9 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.1
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|++|+|||...
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999854
No 302
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=63.53 E-value=2.9 Score=40.33 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=24.2
Q ss_pred cchhhHHHHHhhh----CCCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~~----~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++... ..++.|.+ ++..|.||||||+..
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 5556777766432 23345655 566999999999874
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=63.48 E-value=3 Score=36.33 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.6
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.-++|.|++|+|||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 304
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.27 E-value=9 Score=44.79 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=31.9
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHHHHHh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~La~q 116 (520)
|+-+.|.+|.|||||..++- +++...+ .+..++|+.+-.+|...
T Consensus 1431 g~~iei~g~~~sGkttl~~~-~~a~~~~---~g~~~~~i~~e~~~~~~ 1474 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQ-VIAAAQR---EGKTCAFIDAEHALDPI 1474 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHHHH---TTCCEEEECTTSCCCHH
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHHHh---cCCeEEEEecCCCCCHH
Confidence 46689999999999997644 4443333 45689999987776544
No 305
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.18 E-value=7.1 Score=36.75 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=21.7
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+-+.+.+|+|+|||.... .+...... .+.+++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~--~LA~~l~~--~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG--KLAKMFVD--EGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHH--HHHHHHHH--TTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHH--HHHHHHHh--cCCEEEEEc
Confidence 347789999999998543 23333332 244666654
No 306
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=63.11 E-value=3.6 Score=37.06 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=17.0
Q ss_pred CCCCCEEEECCCCChhhHHhH
Q 010028 67 LFERDLCINSPTGSGKTLSYA 87 (520)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~l 87 (520)
..|.-+.|.||+|+|||....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 346778999999999998543
No 307
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=63.10 E-value=3.2 Score=39.71 Aligned_cols=16 Identities=44% Similarity=0.403 Sum_probs=13.8
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-++|.||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5788999999999854
No 308
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.10 E-value=2 Score=41.24 Aligned_cols=37 Identities=24% Similarity=0.102 Sum_probs=24.9
Q ss_pred CcchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.+.. .++.|.+ ++..|.||||||.+.
T Consensus 70 ~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 70 PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 355677777766432 2234655 566999999999874
No 309
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=63.06 E-value=16 Score=40.92 Aligned_cols=77 Identities=9% Similarity=0.261 Sum_probs=58.0
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC-Cce----eEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cccCCC-CCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMD-VEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~----~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gid-l~~ 442 (520)
.+.++||.+|++.-+..+++.++..+. .+. .+..++|+.+..++.+..+.+.+ .+|+|+|+- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 467899999999999999988876532 245 78999999999888777777766 899999962 222222 556
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777764
No 310
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=63.03 E-value=3.6 Score=36.50 Aligned_cols=28 Identities=21% Similarity=0.054 Sum_probs=19.4
Q ss_pred HHhhhC-CCCCCCCEEEECCCCChhhHHh
Q 010028 59 WQETIG-PGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 59 i~~~~~-~~~~~~~~li~apTGsGKT~~~ 86 (520)
++.++. .+..|.-+.|.+|+|+|||..+
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 444443 3334667899999999999854
No 311
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=62.99 E-value=8.1 Score=33.62 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=46.1
Q ss_pred CCCcEEEEecCHHHHHH-HHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c----cc-------
Q 010028 370 GEEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR------- 436 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~-l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~------- 436 (520)
...++||+|++..-+.. +.+.+......+..+..++|+.....+..... +..+|+|+|.. + ..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 156 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDA 156 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCccccc
Confidence 36789999999998887 66666665444578888888764432211111 24689999853 2 12
Q ss_pred CCCCCCCcEEEE
Q 010028 437 GMDVEGVNNVVN 448 (520)
Q Consensus 437 Gidl~~~~~VI~ 448 (520)
++.+.++++||.
T Consensus 157 ~~~~~~~~~iIi 168 (216)
T 3b6e_A 157 GVQLSDFSLIII 168 (216)
T ss_dssp CCCGGGCSEEEE
T ss_pred ccchhcccEEEE
Confidence 255666777664
No 312
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=62.97 E-value=2.5 Score=40.60 Aligned_cols=36 Identities=28% Similarity=0.187 Sum_probs=24.3
Q ss_pred cchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++.+.. .++.|.+ ++..|+||||||...
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 55667777665332 2334655 566999999999874
No 313
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.70 E-value=3.5 Score=36.15 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 19 ~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999984
No 314
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=62.68 E-value=7.4 Score=36.88 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=16.4
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhh
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
+.|.||+|||||..+ -.+..+..
T Consensus 95 igI~GpsGSGKSTl~--~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS--RVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHH--HHHHHHHT
T ss_pred EEEECCCCCCHHHHH--HHHHHHhc
Confidence 677999999999853 34554443
No 315
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=62.57 E-value=11 Score=35.51 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=18.6
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHhh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLSN 96 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~~ 96 (520)
.+.-+.|.||+|||||.. +-++..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHH--HHHHHhhcc
Confidence 345678899999999984 334444443
No 316
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=62.51 E-value=25 Score=34.71 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=34.9
Q ss_pred cceEEeccCccchHHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEee
Q 010028 168 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 243 (520)
Q Consensus 168 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViD 243 (520)
+..+..++|+.+..++...+.. ......+|+|+|. .+. .++++..+++||.-
T Consensus 324 ~~~~~~lhg~~~~~~R~~~l~~-----------------F~~g~~~vLvaT~-----v~~--rGlDi~~v~~VI~~ 375 (434)
T 2db3_A 324 EFPTTSIHGDRLQSQREQALRD-----------------FKNGSMKVLIATS-----VAS--RGLDIKNIKHVINY 375 (434)
T ss_dssp TCCEEEESTTSCHHHHHHHHHH-----------------HHTSSCSEEEECG-----GGT--SSCCCTTCCEEEES
T ss_pred CCCEEEEeCCCCHHHHHHHHHH-----------------HHcCCCcEEEEch-----hhh--CCCCcccCCEEEEE
Confidence 6778889999876665443321 2234678999994 122 46888899988853
No 317
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=62.48 E-value=31 Score=33.40 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=50.3
Q ss_pred cccEEEEcCCHHHHHhHHhhhhcccccccccccchhhhhHHhhhcccchhccchhhHHHHhhhcccccceEEeccCccch
Q 010028 101 CLRALVVLPTRDLALQVNSARCKYCCKNIFGLIADHSIAEMCVQFDSLLFISLPQVKDVFAAIAPAVGLSVGLAVGQSSI 180 (520)
Q Consensus 101 ~~~vlil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 180 (520)
..++||.++++.-++.+++. +... ++.+..++|+.+.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~---------------------------------------L~~~----~~~~~~~h~~~~~ 312 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEK---------------------------------------MREA----NFTVSSMHGDMPQ 312 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHH---------------------------------------HHHT----TCCCEEECTTSCH
T ss_pred CCcEEEEEcCHHHHHHHHHH---------------------------------------HHhC----CCceEEeeCCCCH
Confidence 34799999999988884443 3221 5678888998776
Q ss_pred HHHHHHHhhcccccccccCCchhHHHhhccCCcEEEeCchHHHHHHhcCCCcccccccEEEeeh
Q 010028 181 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 244 (520)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDE 244 (520)
..+...+.. .......|+|+|.- +. .++++..+++||.-+
T Consensus 313 ~~r~~~~~~-----------------f~~g~~~vlv~T~~-----~~--~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 313 KERESIMKE-----------------FRSGASRVLISTDV-----WA--RGLDVPQVSLIINYD 352 (410)
T ss_dssp HHHHHHHHH-----------------HHHTSSCEEEECGG-----GS--SSCCCTTEEEEEESS
T ss_pred HHHHHHHHH-----------------HHCCCCCEEEECCh-----hh--CcCCcccCCEEEEEC
Confidence 655433221 22345789999932 22 457888888888533
No 318
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=62.31 E-value=3.7 Score=39.50 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=23.2
Q ss_pred cchhhHHHHHh---hhCCCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQE---TIGPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~---~~~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
|..-|.+.++. ++...+.|.+ ++..|.||||||...
T Consensus 63 ~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 63 PSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp TTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 44556655544 2233445765 566999999999875
No 319
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=62.23 E-value=8.2 Score=34.47 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=21.1
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEE
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil 107 (520)
++++.++.|+|||..++- +...+... +.+++++
T Consensus 8 ~I~~~~kgGvGKTt~a~~-la~~l~~~---G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQ-AAHAQLRQ---GVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHH-HHHHHHHT---TCCEEEE
T ss_pred EEEEECCCCCcHHHHHHH-HHHHHHHC---CCCEEEE
Confidence 588899999999997543 33333332 3455433
No 320
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.13 E-value=3 Score=40.24 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=25.3
Q ss_pred CcchhhHHHHHhhh----CCCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~----~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.+. ..++.|.+ ++..|.||||||...
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 35566877776533 23445755 566999999999874
No 321
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=62.00 E-value=3.3 Score=38.37 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.9
Q ss_pred CCEEEECCCCChhhHH
Q 010028 70 RDLCINSPTGSGKTLS 85 (520)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (520)
+.+++.||+|+|||..
T Consensus 45 ~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 3499999999999984
No 322
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=61.84 E-value=3.4 Score=34.67 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=15.0
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
+.++|.|+.|||||.+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67899999999999854
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=61.83 E-value=6 Score=37.44 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=22.1
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
-++|.|+.|+|||.. ++.+... ..+.++.++.|.
T Consensus 6 v~~i~G~~GaGKTTl-----l~~l~~~-~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL-----LRHILNE-QHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHH-----HHHHHHS-CCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHH-----HHHHHhh-cCCCcEEEEEec
Confidence 367899999999984 2223222 234567777775
No 324
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=61.79 E-value=2.5 Score=40.48 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999854
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.71 E-value=3.5 Score=35.46 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.4
Q ss_pred CCEEEECCCCChhhHH
Q 010028 70 RDLCINSPTGSGKTLS 85 (520)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (520)
.-+++.||+|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3467899999999984
No 326
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.67 E-value=3.4 Score=36.38 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=13.2
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
++|.||+|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999854
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=61.52 E-value=3.3 Score=36.28 Aligned_cols=18 Identities=33% Similarity=0.148 Sum_probs=14.9
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.+.-+.|.|++|+|||..
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355678999999999984
No 328
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.46 E-value=2.2 Score=41.31 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=23.3
Q ss_pred cchhhHHHHHhhhCCC----C-CCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQETIGPG----L-FERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~~~----~-~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++.+..++ . .|.+ ++..|.||||||...
T Consensus 60 ~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 60 DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 4456766666533221 1 2555 577999999999874
No 329
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.43 E-value=3 Score=37.34 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=10.9
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
|.-+.|.||+|+|||..
T Consensus 27 G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCEEEEECSCC----CH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56788999999999985
No 330
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=61.42 E-value=6.4 Score=39.07 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=22.3
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
.-+++.||+|+|||..... +...+ .. .+.+++++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~k-LA~~l-~~--~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGK-LAYFY-KK--RGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHH-HHHHH-HH--TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHH-HH--cCCeEEEEe
Confidence 3477899999999986433 33333 32 355677665
No 331
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.38 E-value=7.4 Score=39.21 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=23.0
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEE
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil 107 (520)
+.-+.|.|++|+|||.. +..+..+... .++++++.
T Consensus 293 GeVI~LVGpNGSGKTTL--l~~LAgll~~--~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTT--IGKLARQFEQ--QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHH--HHHHHHHHHH--TTCCEEEE
T ss_pred CeEEEEECCCcccHHHH--HHHHHHHhhh--cCCeEEEe
Confidence 34578899999999985 3344444433 34567776
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=61.28 E-value=3.5 Score=35.39 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.-+++.|++|||||..+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999854
No 333
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.73 E-value=1.5 Score=47.25 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=14.3
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999864
No 334
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.68 E-value=3.3 Score=41.38 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999854
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.61 E-value=3.4 Score=38.57 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.1
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.-+++.||+|+|||..+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44788999999999853
No 336
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=60.57 E-value=3.4 Score=41.32 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.9
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..++++||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57999999999999854
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.47 E-value=3.1 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.4
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|++|||||..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999854
No 338
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=60.45 E-value=4.1 Score=34.49 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.0
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.++|.+++|||||..+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999854
No 339
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=60.37 E-value=3.7 Score=36.16 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.2
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
++|.||+|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999854
No 340
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=60.12 E-value=10 Score=32.11 Aligned_cols=34 Identities=21% Similarity=-0.018 Sum_probs=20.6
Q ss_pred CEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
-+.+.|+.|+|||... ..++..+.. ++.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~~---~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAVR---EGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHH---TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhHh---cCCeeeEEE
Confidence 4678999999999853 224444432 234454444
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=59.96 E-value=3.5 Score=35.88 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.-+.+.||+|+|||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3667889999999999854
No 342
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=59.75 E-value=16 Score=39.20 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=54.8
Q ss_pred HhcCCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c-----c----
Q 010028 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T---- 435 (520)
Q Consensus 367 ~~~~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~---- 435 (520)
....+..++|.++|+.-|...++.+.... ..++.+..+.|+++..+|.... ..+|+++|+- + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 44567789999999999998888776543 2458899999999887665443 3699999962 2 1
Q ss_pred ---cCCCCCCCcEEEE
Q 010028 436 ---RGMDVEGVNNVVN 448 (520)
Q Consensus 436 ---~Gidl~~~~~VI~ 448 (520)
..+++.++.++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 1356667777663
No 343
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=59.74 E-value=3.7 Score=37.91 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999843
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=59.70 E-value=4.3 Score=35.95 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+.|.||+|||||..+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999853
No 345
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.56 E-value=5.1 Score=38.24 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999853
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=59.54 E-value=4 Score=34.30 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+++.|++|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999854
No 347
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=59.53 E-value=3.5 Score=40.36 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.5
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-++|.||||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3678999999999854
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=59.40 E-value=3.6 Score=35.28 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.5
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-+++.|++|+|||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999854
No 349
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=59.37 E-value=7.4 Score=33.64 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=14.2
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
|.-+.+.+|+|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 34578899999999985
No 350
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=59.37 E-value=4.1 Score=35.60 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=58.87 E-value=4.9 Score=34.29 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.4
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+++.|++|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999854
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=58.76 E-value=6.9 Score=36.53 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.3
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-+.|.||+|+|||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 353
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=58.76 E-value=8.6 Score=36.43 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=22.0
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+-+.+.+++|+|||.... .+...... .+.+++++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~--~LA~~l~~--~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA--KMANYYAE--LGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHH--HHHHHHHH--TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHH--HHHHHHHH--CCCeEEEEe
Confidence 347789999999998643 23333332 345677664
No 354
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=58.72 E-value=9.3 Score=33.19 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=14.5
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+.|.|++|+|||..+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999853
No 355
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=58.58 E-value=4.8 Score=40.73 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=15.7
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||+|+|||..+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 567999999999999854
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=58.51 E-value=4.4 Score=33.53 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=13.1
Q ss_pred CEEEECCCCChhhHH
Q 010028 71 DLCINSPTGSGKTLS 85 (520)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (520)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999985
No 357
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=58.23 E-value=3.8 Score=39.72 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.4
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.++|.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999854
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.22 E-value=3.9 Score=35.02 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.1
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.-+++.|++|||||..+
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999854
No 359
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.19 E-value=4.4 Score=34.73 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=12.9
Q ss_pred CEEEECCCCChhhHH
Q 010028 71 DLCINSPTGSGKTLS 85 (520)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (520)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999984
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=58.09 E-value=4.5 Score=35.41 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566899999999999854
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=57.79 E-value=4 Score=35.26 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.0
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|++|||||..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 362
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=57.78 E-value=4.4 Score=35.37 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.9
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+.|.||.|||||...
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999853
No 363
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=57.78 E-value=8.5 Score=37.74 Aligned_cols=42 Identities=10% Similarity=-0.147 Sum_probs=25.0
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhh--ccccccEEEEcCC
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 110 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~--~~~~~~vlil~Pt 110 (520)
|.-+.|.+|+|+|||..+...++..+... +..+.+++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 46688999999999986543222222211 1124567777643
No 364
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=57.72 E-value=61 Score=31.05 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=52.3
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCC-CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----ccc-CCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~-Gidl~~ 442 (520)
.+.++||.+|++.-+..+++.++.... .+..+..++|+......... ..+..+|+|+|.- +.. ..++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 355899999999999999888887642 35778888888765433221 2357799999942 223 356777
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888764
No 365
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=57.68 E-value=5.1 Score=38.57 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.4
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35799999999999864
No 366
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=57.58 E-value=3.4 Score=44.55 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=18.6
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHH
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l 94 (520)
..++++.||+|+|||..+- .+.+.+
T Consensus 201 ~~~vLL~G~pGtGKT~la~-~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE-GLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH-HHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH-HHHHHH
Confidence 4689999999999998653 244443
No 367
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.53 E-value=4.4 Score=35.18 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.4
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+++.|++|||||..+
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45888999999999854
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.53 E-value=4.5 Score=35.17 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.0
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.-+++.|++|||||..+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34788999999999853
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.41 E-value=4 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.0
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.|++|||||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999853
No 370
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=57.07 E-value=7.4 Score=36.80 Aligned_cols=34 Identities=21% Similarity=0.056 Sum_probs=22.1
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHH
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIV 91 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il 91 (520)
.++.++. .+..+.-++|.|++|+|||..++-.+.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455553 223345689999999999986654333
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=56.90 E-value=4.7 Score=33.69 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=13.5
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3688999999999854
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=56.88 E-value=4.7 Score=34.72 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.1
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999864
No 373
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.75 E-value=9 Score=35.82 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=14.1
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+++.||+|+|||..+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999854
No 374
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=56.74 E-value=6.5 Score=37.89 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=23.0
Q ss_pred hhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 53 PVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 53 ~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.-|.+.++.+.. .++.|.+ ++..|.||||||++.
T Consensus 83 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 357777665432 3344655 566999999999874
No 375
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=56.43 E-value=6.5 Score=33.37 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.1
Q ss_pred CEEEECCCCChhhHH
Q 010028 71 DLCINSPTGSGKTLS 85 (520)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (520)
-.+|.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568899999999984
No 376
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=56.40 E-value=4.7 Score=34.88 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=13.0
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+++.|++|||||...
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999853
No 377
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=56.35 E-value=18 Score=38.89 Aligned_cols=75 Identities=7% Similarity=-0.063 Sum_probs=53.3
Q ss_pred hcCCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c-----ccC---
Q 010028 368 SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRG--- 437 (520)
Q Consensus 368 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~G--- 437 (520)
...+.+++|.++|+.-|...++.+...+ ..++++..+.|+++...+.... ..+|+|+|+- + ..+
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~ 185 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAF 185 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhc
Confidence 3456789999999999988888776543 2458899999999876555433 3799999963 2 223
Q ss_pred ----CCCCCCcEEEE
Q 010028 438 ----MDVEGVNNVVN 448 (520)
Q Consensus 438 ----idl~~~~~VI~ 448 (520)
+...++.++|.
T Consensus 186 ~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 186 SPEERVQRKLHYALV 200 (853)
T ss_dssp SGGGCCCCSCCEEEE
T ss_pred cHhHhcccCCcEEEE
Confidence 45566777663
No 378
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=56.34 E-value=4.3 Score=38.28 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=19.5
Q ss_pred CCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 67 LFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..|.-+.|.||+|+|||.. +-++..+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTL--l~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI--LRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHH--HHHHHcCC
Confidence 3478899999999999983 33444333
No 379
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=56.32 E-value=5.2 Score=35.35 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..+++.|++|||||..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 380
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=56.27 E-value=4.8 Score=34.48 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.1
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 381
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=56.21 E-value=15 Score=35.68 Aligned_cols=36 Identities=17% Similarity=-0.033 Sum_probs=27.8
Q ss_pred CcchhhHHHHHhhhCCCCCCCCEEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (520)
.|-..=.++|+.+. ++-.|+..+|.|+.|+|||...
T Consensus 157 e~~~tGiraID~l~-PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 157 DPKIYSTRLIDLFA-PIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp STTCHHHHHHHHHS-CCBTTCEEEEEECTTCCHHHHH
T ss_pred cchhccchhhhhcc-cccCCceEEEecCCCCChhHHH
Confidence 34455567888755 5667899999999999999854
No 382
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=56.20 E-value=28 Score=37.84 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=48.2
Q ss_pred HHhcCCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc
Q 010028 366 LQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 433 (520)
Q Consensus 366 ~~~~~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (520)
+....+.+++|.++|..-|...+..+.... ..++.+..+.|+++..+|.... ..+|+++|+.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 344567789999999999988888776543 3468899999999987766655 4799999964
No 383
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=56.10 E-value=4.1 Score=35.72 Aligned_cols=17 Identities=35% Similarity=0.214 Sum_probs=14.2
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
+.-+.|.||+|||||..
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44578899999999984
No 384
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=56.00 E-value=21 Score=38.61 Aligned_cols=76 Identities=8% Similarity=0.073 Sum_probs=55.1
Q ss_pred HhcCCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c-----cc---
Q 010028 367 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TR--- 436 (520)
Q Consensus 367 ~~~~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~--- 436 (520)
....+..++|.++|+.-|...++.+.... ..++.+.++.|+++..+|.... ..+|+++|+- + ..
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~ 221 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMA 221 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhh
Confidence 44567789999999999988888776542 2458899999999887665544 3699999963 2 12
Q ss_pred ----CCCCCCCcEEEE
Q 010028 437 ----GMDVEGVNNVVN 448 (520)
Q Consensus 437 ----Gidl~~~~~VI~ 448 (520)
.+.+.++.++|.
T Consensus 222 ~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 222 HSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred ccHhhhccCCCCEEEE
Confidence 356667777663
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=55.67 E-value=4.6 Score=34.29 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+.+.|+.|||||...
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 556889999999999853
No 386
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=55.55 E-value=5 Score=36.12 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.|.-+.|.||+|+|||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 47778999999999997
No 387
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=55.52 E-value=4.5 Score=35.16 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.4
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+.|.|++|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999853
No 388
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=55.48 E-value=5.7 Score=38.12 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=23.3
Q ss_pred cchhhHHHHHhh---hCCCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~---~~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++.+ +...+.|.+ ++..|.||||||+..
T Consensus 62 ~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp TTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 445566555442 333445755 566999999999875
No 389
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=55.42 E-value=5 Score=34.96 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.0
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|+.|||||..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 456889999999999854
No 390
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=55.17 E-value=7.2 Score=37.94 Aligned_cols=28 Identities=21% Similarity=0.082 Sum_probs=19.7
Q ss_pred HHHhhhCCCCCCCCEEEECCCCChhhHH
Q 010028 58 VWQETIGPGLFERDLCINSPTGSGKTLS 85 (520)
Q Consensus 58 ai~~~~~~~~~~~~~li~apTGsGKT~~ 85 (520)
++..+.-.+..++-+++.||+|+|||..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHH
Confidence 4444333344567789999999999984
No 391
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=55.14 E-value=3.3 Score=38.35 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=17.9
Q ss_pred CCCCCEEEECCCCChhhHHhHH
Q 010028 67 LFERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ll 88 (520)
..|.-++|.||+|+|||..+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHH
Confidence 3477899999999999986544
No 392
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=54.97 E-value=8.1 Score=36.68 Aligned_cols=37 Identities=22% Similarity=0.146 Sum_probs=24.5
Q ss_pred CcchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.+.. .++.|.+ ++..|.||||||.+.
T Consensus 53 ~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 53 QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 355567776665432 2334655 566999999999875
No 393
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.96 E-value=1.8 Score=46.71 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.3
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
++++.||||+|||..+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5899999999999864
No 394
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=54.79 E-value=4.8 Score=35.68 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.1
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.|++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 395
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=54.68 E-value=15 Score=34.98 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=28.0
Q ss_pred HHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 57 ~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
.+++.+.-....+.-+.+.||+|+|||.. +-.+..+... .+.++.++.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTL--l~~l~g~~~~--~~g~v~i~~ 90 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTT--IDALGSLLTA--AGHKVAVLA 90 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHH--HHHHHHHHHH--TTCCEEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHH--HHHHHHhhhh--CCCEEEEEE
Confidence 44555443344466788999999999984 3333333322 234566655
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=54.65 E-value=6.2 Score=35.91 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=16.3
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..++|.|++|+|||...
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 789999999999999853
No 397
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=54.45 E-value=4.3 Score=34.50 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=10.9
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|+.|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 398
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=54.19 E-value=69 Score=24.26 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=78.4
Q ss_pred EEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc--cccCC-----CCCCCcEE
Q 010028 374 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA--MTRGM-----DVEGVNNV 446 (520)
Q Consensus 374 ~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~--~~~Gi-----dl~~~~~V 446 (520)
.+||.+.-+-+..+.+.++..| .++..++++.+.+.|.+-++.|.+...++-..-+. +.+.| -.|.+++|
T Consensus 5 fvvfssdpeilkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvv 81 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVV 81 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEE
Confidence 3567777777788888888766 89999999999999999999998755555433321 11111 35677776
Q ss_pred EEccCCCC--HHHHHHHHhhcccCCCCCcEEEEEecchHHHHHHHHHHhcCCCCCcccCC
Q 010028 447 VNYDKPAY--IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 504 (520)
Q Consensus 447 I~~~~p~s--~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (520)
++.....- +..|+.-+.- . .-.+++.+...+-.+-++.-+.+...+.....++
T Consensus 82 vivttddkewikdfieeake---r--gvevfvvynnkdddrrkeaqqefrsdgvdvrtvs 136 (162)
T 2l82_A 82 VIVTTDDKEWIKDFIEEAKE---R--GVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVS 136 (162)
T ss_dssp EEEECCCHHHHHHHHHHHHH---T--TCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEES
T ss_pred EEEecCcHHHHHHHHHHHHh---c--CcEEEEEecCCCchhHHHHHHHhhhcCceeeecC
Confidence 66543211 2244433321 1 2357777777777777777777777776665554
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=53.86 E-value=5.6 Score=34.98 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=12.9
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+++.||+||||+..+
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 400
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=53.56 E-value=8.6 Score=39.48 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 401
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.49 E-value=5.2 Score=40.30 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.1
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||..+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999853
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=53.40 E-value=5.2 Score=35.21 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=13.5
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999854
No 403
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.30 E-value=6.3 Score=40.19 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.1
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
+.++++||+|+|||..+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 404
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=53.19 E-value=9 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.0
Q ss_pred CCCC--EEEECCCCChhhHHh
Q 010028 68 FERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~--~li~apTGsGKT~~~ 86 (520)
.|.+ ++..|.||||||...
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 3655 566999999999874
No 405
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=52.90 E-value=5.8 Score=35.82 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=14.5
Q ss_pred CCCEEEECCCCChhhHH
Q 010028 69 ERDLCINSPTGSGKTLS 85 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (520)
..-++|.||+|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35688999999999984
No 406
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=52.88 E-value=5.6 Score=38.55 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.6
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-.+|+||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999853
No 407
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=52.85 E-value=6.4 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.019 Sum_probs=18.5
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.|.-+.+.+|.|+|||.. +-++..+.
T Consensus 32 ~Ge~v~L~G~nGaGKTTL--lr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL--TRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHH--HHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhC
Confidence 466788999999999983 33444443
No 408
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=52.71 E-value=5.9 Score=35.68 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.|.-+.|.||+|+|||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47788999999999998
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=52.68 E-value=5.4 Score=36.49 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.4
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.-++++|++|||||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45788999999999854
No 410
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=52.67 E-value=5.9 Score=35.81 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.0
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.||.|||||..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=52.65 E-value=5.9 Score=35.20 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=13.1
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999854
No 412
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.63 E-value=8.9 Score=37.62 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=22.1
Q ss_pred cchhhHHHHHhh---hCCCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~---~~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++.+ +..++.|.+ ++..|.||||||++.
T Consensus 118 ~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 118 QQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEe
Confidence 444555554432 122234655 566999999999875
No 413
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=52.12 E-value=9.5 Score=36.60 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=24.9
Q ss_pred CcchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.+.. .++.|.+ ++..|.||||||...
T Consensus 65 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 356678777665322 2334655 566999999999874
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=51.93 E-value=6.7 Score=35.04 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.2
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
...+++.|++|||||..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 415
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=51.86 E-value=9.5 Score=36.86 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=22.2
Q ss_pred hhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 53 PVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 53 ~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.-|.+.++.+.. .++.|.+ ++..|.||||||...
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 457666655422 2334655 566999999999864
No 416
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=51.72 E-value=8.8 Score=36.82 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=24.2
Q ss_pred CcchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.+.. .++.|.+ ++..|+||||||...
T Consensus 53 ~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 53 HGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp CTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 345567776665432 2334655 566999999999874
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=51.71 E-value=6.2 Score=35.03 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.4
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+-++|.||+||||+..+
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345778999999999854
No 418
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=51.67 E-value=6.5 Score=34.13 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.5
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+.|.|++|||||.+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 419
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=51.49 E-value=6.7 Score=35.65 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.2
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..+.|.||+|||||...
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567889999999999853
No 420
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=51.44 E-value=10 Score=36.59 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=24.9
Q ss_pred CcchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.+.. .++.|.+ ++..|.||||||.+.
T Consensus 60 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 60 KPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 456677777665432 2334655 566999999999874
No 421
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=51.31 E-value=9 Score=36.88 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=22.8
Q ss_pred chhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 52 FPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 52 ~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
..-|.+.++.+.. .++.|.+ ++..|.||||||.+.
T Consensus 81 ~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 81 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3457666655432 2334655 566899999999874
No 422
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=51.23 E-value=9 Score=36.85 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=22.5
Q ss_pred chhhHHHHHhhh----CCCCCCCC--EEEECCCCChhhHHh
Q 010028 52 FPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 52 ~~~Q~~ai~~~~----~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
...|.+.++.+. ..++.|.+ ++..|.||||||...
T Consensus 70 ~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred cccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 345766654432 22334655 566999999999874
No 423
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=51.11 E-value=9.1 Score=37.04 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=24.2
Q ss_pred cchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++.+.. .++.|.+ ++..|.||||||...
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 55667777665332 2334655 566999999999874
No 424
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=51.06 E-value=7.9 Score=34.27 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||.|+|||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999983
No 425
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=50.96 E-value=27 Score=37.58 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.1
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
.+.+++.||+|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 367999999999999743
No 426
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=50.77 E-value=6 Score=34.21 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.6
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+.|.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999853
No 427
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=50.76 E-value=5.9 Score=42.02 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=49.4
Q ss_pred CcEEEEecCHHHHHHH-HHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-cc-----------cCC
Q 010028 372 EKCIVFTSSVESTHRL-CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT-----------RGM 438 (520)
Q Consensus 372 ~k~lIf~~s~~~~~~l-~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~-----------~Gi 438 (520)
+++||.+|++.-+..+ .+.|+.....+..+..++|+....++...+. +..+|+|+|.- +. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999998888 8888876554578999999886654332222 46899999853 22 135
Q ss_pred CCCCCcEEEE
Q 010028 439 DVEGVNNVVN 448 (520)
Q Consensus 439 dl~~~~~VI~ 448 (520)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888774
No 428
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=50.49 E-value=6.5 Score=34.63 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.0
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
.-+.|.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999853
No 429
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=50.26 E-value=9.6 Score=37.38 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=23.6
Q ss_pred cchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++.+.. .++.|.+ ++..|.||||||++.
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 45567776665322 2334654 566999999999874
No 430
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=50.18 E-value=11 Score=32.96 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.5
Q ss_pred CCEEEECCCCChhhHH
Q 010028 70 RDLCINSPTGSGKTLS 85 (520)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (520)
.-.+|.||+|+|||..
T Consensus 24 ~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEEcCCCCCHHHH
Confidence 3468899999999985
No 431
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=50.03 E-value=13 Score=31.89 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=21.3
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCCHH
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt~~ 112 (520)
++|.|++|||||.-+.- +... +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~---~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD---APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS---CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHH-----HHhc---CCCeEEEecCCC
Confidence 58899999999974322 1111 346788776543
No 432
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=49.98 E-value=12 Score=33.57 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=49.7
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----ccc---CCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR---GMDV 440 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~---Gidl 440 (520)
.+.++||.+|++.-+..+++.++... ..+..+..++|+.....+ ......+..+|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 34579999999999999999888753 234667767665322111 11122456789999942 112 4788
Q ss_pred CCCcEEEE
Q 010028 441 EGVNNVVN 448 (520)
Q Consensus 441 ~~~~~VI~ 448 (520)
.++.++|.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88888774
No 433
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=49.91 E-value=29 Score=33.25 Aligned_cols=74 Identities=11% Similarity=0.234 Sum_probs=52.4
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----cc-cCCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~-~Gidl~~ 442 (520)
.+.++||.+|++.-+..+++.+.... ..+..+..++|+....+....+. ..+|+|+|.- +. ..+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999999999988887653 34578888999887765544433 4689999842 11 2355666
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 434
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=55.38 E-value=3.4 Score=34.92 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=15.9
Q ss_pred ccccEEEEcCCHHHHHhHHhh
Q 010028 100 RCLRALVVLPTRDLALQVNSA 120 (520)
Q Consensus 100 ~~~~vlil~Pt~~La~q~~~~ 120 (520)
.+.++||.++++..+..+++.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~ 49 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANW 49 (170)
Confidence 345799999999988885443
No 435
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.52 E-value=7.1 Score=35.74 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999983
No 436
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=49.48 E-value=95 Score=29.72 Aligned_cols=76 Identities=9% Similarity=0.164 Sum_probs=52.5
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----cccc-CCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidl~~ 442 (520)
.+.++||.++++.-+..+++.++..+ ..+..+...+|+..... ..+.+..+..+|+|+|. .+.. .+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 46689999999999999998887753 23456777777665433 34455557889999994 2223 356666
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 437
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.35 E-value=10 Score=37.23 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=21.5
Q ss_pred cchhhHHHHHhh---hCCCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~---~~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
|..-|.+.++.+ +..++.|.+ ++..|.||||||++.
T Consensus 116 ~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 116 PLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp TTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 444555554331 112223655 566999999999874
No 438
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=49.30 E-value=16 Score=42.78 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=32.2
Q ss_pred HHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.++. .+..+..++|.+|+|+|||..++-.+.+.+. .+.+++|++-.
T Consensus 21 ~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~----~G~~vlYI~te 71 (1706)
T 3cmw_A 21 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAE 71 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEECTT
T ss_pred HHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhh----CCCceEEEEec
Confidence 4455554 3445788999999999999876554444333 24468887643
No 439
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=49.25 E-value=9.1 Score=36.88 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=24.2
Q ss_pred CcchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.+.. .++.|.+ ++..|.||||||+..
T Consensus 64 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 64 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred eccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 345567766655432 2334655 566999999999864
No 440
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=49.19 E-value=7.2 Score=34.20 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.3
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+++.|++|+|||..+
T Consensus 25 ~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567888999999999854
No 441
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=48.96 E-value=5.6 Score=36.18 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999853
No 442
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=48.89 E-value=6.7 Score=38.07 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=24.9
Q ss_pred CcchhhHHHHHhh---hCCCCCCCC--EEEECCCCChhhHHh
Q 010028 50 SLFPVQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 50 ~~~~~Q~~ai~~~---~~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.+..-|.+.++.+ +..++.|.+ ++..|.||||||+..
T Consensus 92 ~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 92 PPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3566777776553 233445755 566999999999864
No 443
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=48.85 E-value=11 Score=37.39 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=23.1
Q ss_pred hhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 53 PVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 53 ~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
.-|.+.++.+.. ..+.|.+ ++..|.||||||+..
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 467777665432 2334655 566999999999875
No 444
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=48.72 E-value=6.5 Score=38.16 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.6
Q ss_pred CCEEEECCCCChhhHH
Q 010028 70 RDLCINSPTGSGKTLS 85 (520)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (520)
.-.+|.|+||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4468899999999985
No 445
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=48.60 E-value=6.8 Score=34.55 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.4
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+++.|++|||||..+
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 446
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=48.50 E-value=8.5 Score=37.21 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=22.1
Q ss_pred cchhhHHHHHhh---hCCCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~---~~~~~~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++.+ +..++.|.+ ++..|.||||||++.
T Consensus 57 ~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 57 GNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred CCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEee
Confidence 445566655441 111223655 566999999999874
No 447
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.12 E-value=9.2 Score=36.20 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.0
Q ss_pred CCCEEEECCCCChhhHHhHH
Q 010028 69 ERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll 88 (520)
+..+++.||+|+|||..++.
T Consensus 123 gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45579999999999986544
No 448
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=48.11 E-value=8.3 Score=34.47 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999983
No 449
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.09 E-value=8.1 Score=35.73 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999983
No 450
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=48.04 E-value=25 Score=35.64 Aligned_cols=74 Identities=14% Similarity=0.278 Sum_probs=50.8
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c----ccC-C-CCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TRG-M-DVEG 442 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~G-i-dl~~ 442 (520)
+.++||++|++.-+..+.+.++... ..+..+..++|+.+...+...+. +..+|+|+|.- + ..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 7789999999999888888887652 22578999999986654322221 24789999843 2 222 3 5666
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787774
No 451
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=48.02 E-value=8.4 Score=34.94 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999983
No 452
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=47.74 E-value=15 Score=37.48 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=29.4
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 58 ai~~~~~-~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
+++.+.- .+..|.-++|.+|+|+|||......++.-+... +...+++.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~---~~g~i~v~ 75 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF---DEPGVFVT 75 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---CCCEEEEE
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEE
Confidence 4555443 444578899999999999986544334444432 12355554
No 453
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=47.70 E-value=16 Score=33.96 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
++-+.+.+++|+|||.... .+..+... .+.+++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~--~la~~~~~--~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA--KLALYYKG--KGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH--HHHHHHHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHH--HHHHHHHH--cCCeEEEec
Confidence 4456778999999998543 23333332 345676664
No 454
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=47.59 E-value=17 Score=34.12 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=17.4
Q ss_pred CCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
+.-+.|.||+|||||..+ -++..+.
T Consensus 80 g~iigI~G~~GsGKSTl~--~~L~~~l 104 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA--RVLQALL 104 (308)
T ss_dssp CEEEEEEECTTSSHHHHH--HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHH--HHHHHHH
Confidence 445778999999999853 3444443
No 455
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=47.51 E-value=30 Score=35.11 Aligned_cols=74 Identities=11% Similarity=0.182 Sum_probs=48.4
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c----ccC-C-CCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TRG-M-DVEG 442 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~G-i-dl~~ 442 (520)
+.++||.+|++.-+..+.+.++... ..+..+..++|+.+...+...+. ...+|+|+|.- + ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 6789999999999988888887652 12588999999986654332221 14689999953 2 223 4 6777
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 456
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=47.44 E-value=23 Score=29.97 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.4
Q ss_pred CCEEEECCCCChhhHH
Q 010028 70 RDLCINSPTGSGKTLS 85 (520)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (520)
.-+.+.|++|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 4478899999999984
No 457
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=47.31 E-value=9.9 Score=36.85 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=23.8
Q ss_pred cchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHh
Q 010028 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~ 86 (520)
+..-|.+.++.+.. .++.|.+ ++..|.||||||+..
T Consensus 77 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 45567777665332 2234655 566999999999864
No 458
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=47.29 E-value=6.8 Score=35.44 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999983
No 459
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=47.09 E-value=12 Score=36.38 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=24.2
Q ss_pred cchhhHHHHHhhhC----CCCCCCC--EEEECCCCChhhHHhH
Q 010028 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (520)
Q Consensus 51 ~~~~Q~~ai~~~~~----~~~~~~~--~li~apTGsGKT~~~l 87 (520)
+..-|.+.++.+.. .++.|.+ ++..|.||||||.+..
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 45567776665322 2334654 5669999999998753
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=47.06 E-value=8.1 Score=35.39 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999983
No 461
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=47.02 E-value=13 Score=35.74 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=15.9
Q ss_pred CCCEEEECCCCChhhHHhHH
Q 010028 69 ERDLCINSPTGSGKTLSYAL 88 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ll 88 (520)
|.-+.|.||+|+|||..+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45578999999999986544
No 462
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=46.61 E-value=8.3 Score=35.44 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999983
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.60 E-value=8.4 Score=35.18 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 477788999999999983
No 464
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=46.60 E-value=8.2 Score=34.38 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=15.0
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.|.-+.|.||+|+|||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778899999999998
No 465
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.58 E-value=9 Score=34.94 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.|.-+.|.||+|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778899999999998
No 466
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.55 E-value=9.1 Score=34.49 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999983
No 467
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=46.36 E-value=8.5 Score=34.87 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.6
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-+.|.|++|||||..+
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999854
No 468
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=46.35 E-value=53 Score=30.89 Aligned_cols=74 Identities=15% Similarity=0.268 Sum_probs=51.4
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcC-CCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-c----cc-CCCCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR-GMDVEG 442 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~-Gidl~~ 442 (520)
.+.++||.+|++.-+..+++.++... ..+..+..++|+.........+ . ..+|+|+|.- + .. .+++..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~--~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C--CCCEEEecHHHHHHHHHcCCccccc
Confidence 46689999999999999999887753 3356788888887765443333 2 5789999853 1 12 356677
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 469
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=46.27 E-value=16 Score=36.19 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=27.8
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 56 ~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
..+++.+ -.+..|.-+.|.||.|+|||.. +-++..+.
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTL--l~~Iag~~ 181 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVL--LGMMARYT 181 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHH--HHHHHHHS
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHH--HHHHhccc
Confidence 4588887 5666788999999999999984 44444443
No 470
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=46.24 E-value=8.5 Score=35.45 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.|.-+.|.||+|+|||.
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47788999999999998
No 471
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=46.12 E-value=8.2 Score=34.79 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.6
Q ss_pred CCCEEEECCCCChhhHHh
Q 010028 69 ERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (520)
+.-+-|.||.|||||..+
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445778999999999853
No 472
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=46.04 E-value=19 Score=33.66 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=21.3
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
.-+.+.+++|+|||..... +...... .+.+++++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~--la~~~~~--~g~~v~l~~ 133 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGK--LAYFYKK--KGFKVGLVG 133 (297)
T ss_dssp EEEEEECSSCSSTTHHHHH--HHHHHHH--TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHH--HHHHHHH--CCCeEEEEe
Confidence 3467789999999986433 2222222 345676664
No 473
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=45.94 E-value=8.7 Score=35.27 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 477788999999999983
No 474
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=45.86 E-value=8.7 Score=41.61 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.++.++++||+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999843
No 475
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=45.85 E-value=14 Score=35.48 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=27.4
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 56 ~~ai~~~~~~~~~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.++++.+ -.+..|..+.|.||.|+|||.. +-++..+.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTL--l~~I~g~~ 95 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTL--LGMICNGA 95 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHH--HHHHHHHS
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 4688887 4566788999999999999985 33444443
No 476
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=45.78 E-value=7 Score=33.20 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=13.2
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-+.|.+++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999853
No 477
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=45.75 E-value=42 Score=36.14 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcCC-CceeEEEeccccCHHHHHHHHHHHHcCCceEEEEecc-----cccC-C-CCCC
Q 010028 371 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 442 (520)
Q Consensus 371 ~~k~lIf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~G-i-dl~~ 442 (520)
++++||.||++.-+..+.+.++.... .+..+..++|+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 77899999999999988888876522 2588999999986654332221 25789999942 2222 3 5666
Q ss_pred CcEEEE
Q 010028 443 VNNVVN 448 (520)
Q Consensus 443 ~~~VI~ 448 (520)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 478
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=45.56 E-value=9.4 Score=35.05 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 477788999999999983
No 479
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=45.54 E-value=8.9 Score=35.17 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 467788999999999983
No 480
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=45.31 E-value=18 Score=43.07 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=33.1
Q ss_pred HHHhhhC--CCCCCCCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEcCC
Q 010028 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (520)
Q Consensus 58 ai~~~~~--~~~~~~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~Pt 110 (520)
.++.++. .+..++.+++.+|+|+|||..+...+.+... .+.+++|++-.
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k----~Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAE 1118 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECTT
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHH----cCCeEEEEEcc
Confidence 3455553 3445788999999999999876554444332 35578888744
No 481
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.19 E-value=8.5 Score=39.00 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.5
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
+.+++.+|+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999853
No 482
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=45.07 E-value=8.9 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.5
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999854
No 483
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=44.99 E-value=24 Score=30.56 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=20.9
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc-CC
Q 010028 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PT 110 (520)
Q Consensus 72 ~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~-Pt 110 (520)
+++.|+-|||||...-+ +.+.+.. .+..+++.- |.
T Consensus 3 I~~EG~DGsGKsTq~~~-L~~~L~~---~g~~v~~treP~ 38 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQL-LAQYLEK---RGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHHHH---TTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHH---CCCcEEEEECCC
Confidence 46789999999996432 3334433 234455443 65
No 484
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=44.77 E-value=10 Score=34.48 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.|.-+.|.||+|+|||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46778899999999998
No 485
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=44.61 E-value=10 Score=36.46 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=18.8
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.|.-+.|.||+|+|||.. +-++.-+.
T Consensus 29 ~Ge~~~llGpsGsGKSTL--Lr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTL--LRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHH--HHHHHTSS
T ss_pred CCCEEEEECCCCchHHHH--HHHHhcCC
Confidence 467788999999999983 44444443
No 486
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=44.61 E-value=33 Score=36.25 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=52.9
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCHHHHHHHHHHHHcCCceEEEEec-----ccccCCC-CCCC
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRGMD-VEGV 443 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~Gid-l~~~ 443 (520)
.++++++.+|++.-+...++.++.....+..+..++|+....++ ..+..+|+|+|. .+..+.. +.++
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 46799999999999999999987655556889999998765432 124789999995 2333333 6678
Q ss_pred cEEEE
Q 010028 444 NNVVN 448 (520)
Q Consensus 444 ~~VI~ 448 (520)
++||.
T Consensus 140 ~~vIi 144 (702)
T 2p6r_A 140 SCLVV 144 (702)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 487
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=44.47 E-value=9.6 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.6
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-+.|.+++|||||..+
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 488
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=44.29 E-value=10 Score=34.37 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999983
No 489
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=44.25 E-value=12 Score=36.14 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=18.9
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHHh
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l~ 95 (520)
.|.-+.+.||+|+|||.. +-++.-+.
T Consensus 28 ~Ge~~~llGpnGsGKSTL--Lr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTT--LLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHH--HHHHHCCC
Confidence 467788999999999983 44454443
No 490
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.12 E-value=15 Score=39.45 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=18.9
Q ss_pred CCCCEEEECCCCChhhHHhHHHHHHHH
Q 010028 68 FERDLCINSPTGSGKTLSYALPIVQTL 94 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ll~il~~l 94 (520)
...++++.||+|+|||..+- .+.+.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~-~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE-GLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH-HHHHHH
Confidence 35789999999999998643 244444
No 491
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=43.86 E-value=8.7 Score=35.58 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.6
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
-+.|.|+.|||||.++
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999854
No 492
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=43.83 E-value=10 Score=33.78 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCChhhHHh
Q 010028 68 FERDLCINSPTGSGKTLSY 86 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (520)
.+.-+++.|+.|+|||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4667889999999999853
No 493
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=43.80 E-value=23 Score=27.02 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCH
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~ 410 (520)
.+.+++++|.+-..+...+..|+..| +.+..+.|++..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G---~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLG---LNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTT---CCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcC---CCEEEEcCcHHH
Confidence 45679999999988999999999876 578889998754
No 494
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=43.70 E-value=21 Score=35.31 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCEEEECCCCChhhHHhHHHHHHHHhhhccccccEEEEc
Q 010028 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ll~il~~l~~~~~~~~~vlil~ 108 (520)
..+++.+++|+|||..+.- +...+.. .+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~-La~~l~~---~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK-LARYIQK---RGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH-HHHHHHH---HHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHH---cCCeEEEEe
Confidence 4688999999999986533 3333332 245677775
No 495
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=43.63 E-value=10 Score=34.43 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCChhhH
Q 010028 68 FERDLCINSPTGSGKTL 84 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (520)
.|.-+.|.||+|+|||.
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778899999999998
No 496
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=43.53 E-value=10 Score=34.08 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.3
Q ss_pred CCEEEECCCCChhhHHh
Q 010028 70 RDLCINSPTGSGKTLSY 86 (520)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (520)
..+.|.+|+|+|||..+
T Consensus 10 ~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45888999999999854
No 497
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=43.36 E-value=11 Score=34.96 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCChhhHH
Q 010028 68 FERDLCINSPTGSGKTLS 85 (520)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (520)
.|.-+.|.||+|+|||..
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999983
No 498
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=43.23 E-value=5.1 Score=35.07 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.8
Q ss_pred EEEECCCCChhhHHh
Q 010028 72 LCINSPTGSGKTLSY 86 (520)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (520)
++|.|+.|||||..+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999853
No 499
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=43.22 E-value=16 Score=35.15 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.9
Q ss_pred CEEEECCCCChhhHHh
Q 010028 71 DLCINSPTGSGKTLSY 86 (520)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (520)
.+++.|+.|+|||...
T Consensus 26 ~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIA 41 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3899999999999854
No 500
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=43.03 E-value=22 Score=26.65 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCCcEEEEecCHHHHHHHHHHHhhcCCCceeEEEeccccCH
Q 010028 370 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 410 (520)
Q Consensus 370 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~ 410 (520)
++.+++++|.+-..+...+..|+..| +.+..+.|++..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~~ 92 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNG---VNAVNVEGGMDE 92 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTT---CEEEEETTHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCC---CCEEEecccHHH
Confidence 35689999999999999999999876 578888888643
Done!