BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010029
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 337 bits (864), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 214/513 (41%), Positives = 296/513 (57%), Gaps = 53/513 (10%)
Query: 37 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
FP E + DLQ +L S L + YL I R P L VIE+NPDAL +A A
Sbjct: 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEA--A 63
Query: 94 DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAG 153
+ +R+ + LHGIP+LLKDNI M T+AGS AL + P DA +V +LR AG
Sbjct: 64 ERDRERRDGRLRGPLHGIPLLLKDNI-NAAPMATSAGSLAL-QGFRPDDAYLVRRLRDAG 121
Query: 154 AIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVS 213
A++LGK +LSEW+NFR + + SG+S RGGQ +NPY +S PC NLA+V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 214 LGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAI 273
+GTETDGSI+CP++ N VVGLKPT+GL SR G+IPI+ QD+ GP+ R+VADAA VL AI
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 241
Query: 274 AGFDHYDPAT-----RAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQV 328
AG D DPAT RA +Y R L P GL+GKR+G+++ P + PL
Sbjct: 242 AGRDDADPATATMPGRAVYDYTAR------LDPQGLRGKRIGLLQTPLLKYRGMPPL--- 292
Query: 329 FDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRS 388
+ LR+ GA+V+ +E+ N + A E T +L EFK + Y +P+RS
Sbjct: 293 IEQAATELRRAGAVVV-PVELPNQGAW---AEAERTLLLYEFKAGLERYFNTH-RAPLRS 347
Query: 389 LAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR----DGFEKL 444
LA++IAFN S +++ +GQ+LL+ A+AT G+ + A I R +G +
Sbjct: 348 LADLIAFNQAHSK-QELGLFGQELLVEADATAGL--ADPAYIRARSDARRLAGPEGIDAA 404
Query: 445 MSTNNLDALVTP-----------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGI 487
++ + LDALV P SY++ AV G+P + VP G +G+P G+
Sbjct: 405 LAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAA--AVAGYPSLTVPMG-QIDGLPVGL 461
Query: 488 CFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS 520
F G +EPKLIE+AY +EQ T+ R+PP F +
Sbjct: 462 LFMGTAWSEPKLIEMAYAYEQRTRARRPPHFDT 494
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 125/500 (25%), Positives = 225/500 (45%), Gaps = 58/500 (11%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIE-VNPDALSQADKADYER 97
+ + ++ +L+ K+ +++ +++VE + ++ + I + AL QA+ ER
Sbjct: 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLK-ER 60
Query: 98 KVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIIL 157
++ L GIPI +KDNI + + TT S L V P DA V+ +L+KAGA+I+
Sbjct: 61 ELP-------LFGIPIAVKDNILVEGE-KTTCASKILENFVAPYDATVIERLKKAGALIV 112
Query: 158 GKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTE 217
GK +L E++ S++ + F KNP+ L P A VSLG++
Sbjct: 113 GKTNLDEFAMGSSTEYSAFFPT-----KNPWDLERVPGGSSGGSAASVAVLSAPVSLGSD 167
Query: 218 TDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFD 277
T GSI P+S V+G+KPT G SR G++ D +G R D A VL+ I+G+D
Sbjct: 168 TGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWD 227
Query: 278 HYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 337
D + S +P + + ++ +KG ++G+ + FF ++ + + F++ + L
Sbjct: 228 EKD----STSAKVPVPEWSEEVKKE-VKGLKIGLPKE-FFEYELQPQVKEAFENFIKELE 281
Query: 338 QEG----ALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVI 393
+EG + + H++ +I + IA E ++ LA + Y + ++
Sbjct: 282 KEGFEIKEVSLPHVKY-SIPTYYIIAPSEASSNLARYDGVRYGYR-------AKEYKDIF 333
Query: 394 AFNNKFSDLEKIKEYGQDLLLSAEA-TDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDA 452
+ D E + ++L A + G + R + F L + +D
Sbjct: 334 EMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDF--LKAFEEVDV 391
Query: 453 LVTPRS-----------------YASTLLAV----GGFPGINVPAGYDSEGVPFGICFGG 491
+ +P + Y S +L V G P I++P + +G+P G G
Sbjct: 392 IASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIG 450
Query: 492 LKGTEPKLIEIAYGFEQATK 511
E L++I+Y +EQ K
Sbjct: 451 KHWDETTLLQISYLWEQKFK 470
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/501 (26%), Positives = 221/501 (44%), Gaps = 62/501 (12%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYER 97
IR ++++L K K+ +V+ I +P + + ++ + A+ +A + D
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD--- 59
Query: 98 KVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVP-RDAGVVVKLRKAGAI 155
+++A + G L GIP+ +KDNI T + + TT S +L VP ++ V+ KL K A+
Sbjct: 60 ELQAKDQMDGKLFGIPMGIKDNIIT-NGLETTCAS-KMLEGFVPIYESTVMEKLHKENAV 117
Query: 156 ILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLG 215
++GK ++ E++ S S F + NP+ A P L +SLG
Sbjct: 118 LIGKLNMDEFA-MGGSTETSYFK----KTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLG 172
Query: 216 TETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAG 275
++T GSI P++ VVG+KPT G SR G++ D +GP+ R V D A VL+AI+G
Sbjct: 173 SDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISG 232
Query: 276 FDHYDPATRAASEYIPRGGYKQFLRPHG--LKGKRLGIVRNPFFNFDEGSPLAQVFDHHL 333
D D + + F G +KG ++ + + + + + + +
Sbjct: 233 ADVNDSTSAPVDDV-------DFTSEIGKDIKGLKVALPKE-YLGEGVADDVKEAVQNAV 284
Query: 334 HTLRQEGALVIDHLEIGN----INSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSL 389
TL+ GA V++ + + N I S IA+ E ++ L+ F Y + SL
Sbjct: 285 ETLKSLGA-VVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYH----SKEAHSL 339
Query: 390 AEVIAFNNK--FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMST 447
E+ + F K + + LS+ D K + + ++ F+K+
Sbjct: 340 EELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQ----KVRTLIKNDFDKVFE- 394
Query: 448 NNLDALVTPRS-----------------YASTLLA----VGGFPGINVPAGYDSEGVPFG 486
N D +V P + YA+ LL + G PGI+VP G S G P G
Sbjct: 395 -NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCG-QSNGRPIG 452
Query: 487 ICFGGLKGTEPKLIEIAYGFE 507
+ F G E L +AY +E
Sbjct: 453 LQFIGKPFDEKTLYRVAYQYE 473
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 215/497 (43%), Gaps = 73/497 (14%)
Query: 40 REATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKV 99
R+ TI++ K ++ +L + L I RL+P + I V + E+K
Sbjct: 7 RKLTIEE---CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVR-------ENVSVEKKG 56
Query: 100 KAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGK 159
K GIP+ +KDNI T M TT S L DA VV K+++AG +++GK
Sbjct: 57 K-------FWGIPVAIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGK 108
Query: 160 ASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETD 219
A+L E++ S++ + F R NP+ L P + +LG++T
Sbjct: 109 ANLDEFAMGSSTERSAFFPTR-----NPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTG 163
Query: 220 GSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHY 279
GS+ P+S VVG KPT GL SR G++ D +GPI +TV DAA +++ I+G D
Sbjct: 164 GSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDEN 223
Query: 280 DPATRAASEYIPRGGYKQFLR--PHGLKGKRLGIVRNPF-FNFDEGSPLAQVFDHHLHTL 336
D T + R FL G+ G + + + + +EG +++ F+ L L
Sbjct: 224 DATT------VNRK--VDFLSEIEEGVSGMKFAVPEEIYEHDIEEG--VSERFEEALKLL 273
Query: 337 RQEGALV----IDHLEIGNINSLNSIANDETTAMLAEFK-LAINAYLKELVTSPVRSLAE 391
+ GA V I H++ ++ + IA E ++ LA F + +KE + L E
Sbjct: 274 ERLGAKVERVKIPHIKY-SVATYYVIAPAEASSNLARFDGVKYGLRIKE------KGLRE 326
Query: 392 VIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLD 451
+ E+++ + A KA + + R D +++S D
Sbjct: 327 MYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKA--MKVRRKISDELNEVLS--QYD 382
Query: 452 ALVTPRS----------------YASTLLAV----GGFPGINVPAGYDSEGVPFGICFGG 491
A++TP S Y + + G P I+VP G+ S +P G+ G
Sbjct: 383 AILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVIG 441
Query: 492 LKGTEPKLIEIAYGFEQ 508
+ + K+ IA E+
Sbjct: 442 RRFADGKVFRIARAIEK 458
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 129/498 (25%), Positives = 207/498 (41%), Gaps = 73/498 (14%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERK 98
R+ TI++ K ++ +L + L I RL+P + I V + E+K
Sbjct: 7 FRKLTIEE---CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVR-------ENVSVEKK 56
Query: 99 VKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILG 158
K GIP+ +KDNI T TT S L DA VV K ++AG +++G
Sbjct: 57 GK-------FWGIPVAIKDNILTLG-XRTTCASRILENYESVFDATVVKKXKEAGFVVVG 108
Query: 159 KASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTET 218
KA+L E++ S++ + F R NP+ L P +LG++T
Sbjct: 109 KANLDEFAXGSSTERSAFFPTR-----NPWDLERVPGGSSGGSAAAVSAGXVVAALGSDT 163
Query: 219 DGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDH 278
GS+ P+S VVG KPT GL SR G++ D +GPI +TV DAA + + I+G D
Sbjct: 164 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDE 223
Query: 279 YDPATRAASEYIPRGGYKQFLR--PHGLKGKRLGIVRNPF-FNFDEGSPLAQVFDHHLHT 335
D T FL G+ G + + + + +EG +++ F+ L
Sbjct: 224 NDATTVNRK--------VDFLSEIEEGVSGXKFAVPEEIYEHDIEEG--VSERFEEALKL 273
Query: 336 LRQEGALV----IDHLEIGNINSLNSIANDETTAMLAEFK-LAINAYLKELVTSPVRSLA 390
L + GA V I H++ ++ + IA E ++ LA F + +KE
Sbjct: 274 LERLGAKVERVKIPHIKY-SVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREXYXKT 332
Query: 391 EVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNL 450
+ F ++ + G L +A K K + R D +++S
Sbjct: 333 RNVGFGE---EVRRRIXIGTFTLSAAYYEAYFNKAXK-----VRRKISDELNEVLS--QY 382
Query: 451 DALVTPRS----------------YASTLLAV----GGFPGINVPAGYDSEGVPFGICFG 490
DA++TP S Y + + G P I+VP G+ S +P G+
Sbjct: 383 DAILTPTSPVTAFKIGEIKDPLTYYLXDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVI 441
Query: 491 GLKGTEPKLIEIAYGFEQ 508
G + + K+ IA E+
Sbjct: 442 GRRFADGKVFRIARAIEK 459
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 137/288 (47%), Gaps = 23/288 (7%)
Query: 53 QNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIP 112
+ +++ ++ + YL + L+P L + +N L +A+ D L G+
Sbjct: 12 RGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLP---------LAGLV 62
Query: 113 ILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSK 172
+ +KDNIAT+ + TTAGS L V P +A V +L+ GA++LGK +L E+ S++
Sbjct: 63 VAVKDNIATRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTE 121
Query: 173 APSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVV 232
+ F KNP+ P +LA ++LG++T GS+ P++ V
Sbjct: 122 HSAFFPT-----KNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVY 176
Query: 233 GLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPR 292
GLKPT G SR G+I D +GP+ R+V D A ++DA AG D D A S +P
Sbjct: 177 GLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLD----ATSLDLPP 232
Query: 293 GGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEG 340
+ P L RLG+VR G + + + L R+ G
Sbjct: 233 RFQEALEGP--LPPLRLGVVREALAGNSPG--VERALEEALKVFRELG 276
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 106/234 (45%), Gaps = 39/234 (16%)
Query: 103 GSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKAS 161
G +RG LHG+P+ +KD K M T AG+ A L +P +A V +LR+AGA++ K +
Sbjct: 59 GQVRGPLHGLPLTVKDLFPVKG-MPTRAGTKAPL-PPLPEEARAVRRLREAGALLFAKTN 116
Query: 162 LSEWSNFRSSKAPSGFSGRGGQGKNPYVL----SADPCXXXXXXXXXXXXNLAA----VS 213
E + G G+NP+ + DP +A S
Sbjct: 117 XHEIA-------------LGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLAS 163
Query: 214 LGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAI 273
LGT+T GSI P+ N VVG KP+ G S G +P++ D GP+ R+V DA ++ + +
Sbjct: 164 LGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEIL 223
Query: 274 AGFDHYDPATRAASEYIPRGGYKQ--FLRPHGLKGKRLGI-VRNPFFNFDEGSP 324
AG E IP G + F P RLG+ VR F E P
Sbjct: 224 AG------------ESIPLEGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLP 265
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 165/435 (37%), Gaps = 57/435 (13%)
Query: 108 LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSN 167
L G + +KDN+ T + GS + RDA VV +L AGA + GKA +
Sbjct: 88 LTGRRVAIKDNV-TVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCF 146
Query: 168 FRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSS 227
SS P+ G +NP+ + ++G + GSI P++
Sbjct: 147 SGSSFTPAS-----GPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAA 201
Query: 228 SNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAAS 287
VVG KPT GL G PI D +GPI RTV DAA +L IAG D DP +
Sbjct: 202 FCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQ---A 258
Query: 288 EYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVID-- 345
+ + G Y L + G R+GIVR F + + H+L + G V +
Sbjct: 259 DSVEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVN 317
Query: 346 ---HLEIGNINSLNSIAND-ETTAMLAEFKLAINA---YLKELVTSPVRSLAEVIAFNNK 398
HL +I N IA D ML +NA Y EL+ + I +
Sbjct: 318 IPWHLHAFHI--WNVIATDGGAYQMLDGNGYGMNAEGLYDPELM---AHFASRRIQHADA 372
Query: 399 FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPR- 457
S+ K+ L +G NL R ++ + D LV P
Sbjct: 373 LSETVKLVA-----LTGHHGITTLGGASYGKARNLVPLARAAYDTAL--RQFDVLVMPTL 425
Query: 458 -SYASTLLA-----------------------VGGFPGINVPAGYDSEGVPFGICFGGLK 493
AS L A V G P ++VPAG G+P G+ G
Sbjct: 426 PYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRH 484
Query: 494 GTEPKLIEIAYGFEQ 508
+ ++ + FE+
Sbjct: 485 FDDATVLRVGRAFEK 499
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 165/435 (37%), Gaps = 57/435 (13%)
Query: 108 LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSN 167
L G + +KDN+ T + GS + RDA VV +L AGA + GKA +
Sbjct: 88 LTGRRVAIKDNV-TVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCF 146
Query: 168 FRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSS 227
SS P+ G +NP+ + ++G + G+I P++
Sbjct: 147 SGSSFTPAS-----GPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAA 201
Query: 228 SNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAAS 287
VVG KPT GL G PI D +GPI RTV DAA +L IAG D DP +
Sbjct: 202 FCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQ---A 258
Query: 288 EYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVID-- 345
+ + G Y L + G R+GIVR F + + H+L + G V +
Sbjct: 259 DSVEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVN 317
Query: 346 ---HLEIGNINSLNSIAND-ETTAMLAEFKLAINA---YLKELVTSPVRSLAEVIAFNNK 398
HL +I N IA D ML +NA Y EL+ + I +
Sbjct: 318 IPWHLHAFHI--WNVIATDGGAYQMLDGNGYGMNAEGLYDPELM---AHFASRRIQHADA 372
Query: 399 FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPR- 457
S+ K+ L +G NL R ++ + D LV P
Sbjct: 373 LSETVKLVA-----LTGHHGITTLGGASYGKARNLVPLARAAYDTAL--RQFDVLVMPTL 425
Query: 458 -SYASTLLA-----------------------VGGFPGINVPAGYDSEGVPFGICFGGLK 493
AS L A V G P ++VPAG G+P G+ G
Sbjct: 426 PYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRH 484
Query: 494 GTEPKLIEIAYGFEQ 508
+ ++ + FE+
Sbjct: 485 FDDATVLRVGRAFEK 499
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 105/232 (45%), Gaps = 24/232 (10%)
Query: 108 LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSN 167
L+G+P +KDNI + +A A RDA VV +LR AGAI+LGK +L +++
Sbjct: 95 LYGVPFAVKDNIDVA-GLPCSAACPAFTYEP-DRDATVVARLRAAGAIVLGKTNLDQFA- 151
Query: 168 FRSSKAPSGFSG-RGGQGKNPYVLSAD--PCXXXXXXXXXXXXNLAAVSLGTETDGSILC 224
+G G R G V D L A SLGT+T GS
Sbjct: 152 -------TGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRV 204
Query: 225 PSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATR 284
P++ N++VG+KPT GL S +GV+P D V +VA+ + G+D DP +R
Sbjct: 205 PAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRRIAEGYDAADPYSR 264
Query: 285 AASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTL 336
+ K+ L PH G R+G+ R F + A ++ L +
Sbjct: 265 PSQ--------KRRL-PH--VGLRVGVPRQDQREFYGNTAYAALYQRALDEM 305
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 30/234 (12%)
Query: 52 KQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGI 111
+ +++ +L+E + + +NP ++ VI + +KA E ++ A+G G+
Sbjct: 18 RSGEISRTELLEATIAHVQAVNPEINAVI------IPLFEKARRESEL-ASGPF---AGV 67
Query: 112 PILLKD-NIATKDKMNTTAGSYALLRSVVPR---DAGVVVKLRKAGAIILGKASLSEWSN 167
P LLKD + ++ +NT+ S ++ R DA V ++R AG ++LGK + E N
Sbjct: 68 PYLLKDLTVVSQGDINTS--SIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN 125
Query: 168 FRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSS 227
+ + P + G +NP+ L L+ V+ G + GS+ P+S
Sbjct: 126 -QVTTEPEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPAS 180
Query: 228 SNSVVGLKPTLGLTSRAGVIPITPRQDSV------GPICRTVADAAYVLDAIAG 275
VVGLKPT G S P+ D+V G R+V D A +LD ++G
Sbjct: 181 VCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSG 231
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 402 LEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR-DGFEKLMSTNNLDALVTPRSYA 460
+E+ E G DLL+ T +T + L L + T +G + + +L L
Sbjct: 373 VERWWEAGWDLLILPTVTR---QTPEIGELMLAKGTDLEGRQSAFISGSLQMLAF----- 424
Query: 461 STLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
+ V G P I++P G S+G+P G+ G E L+++A E A
Sbjct: 425 TVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGA 473
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 36/241 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLR 136
H IE + + D + +A+G LRG I + +KD I T + M T GS + R
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPLRG---IAVGIKDIIDTAN-MPTEMGSE-IYR 80
Query: 137 SVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195
PR DA VV+ L++AGA I+GK + + ++ S+ P+ NP+ P
Sbjct: 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTAT-------LNPHNTGHSPG 129
Query: 196 XXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
+ ++LGT+T GS++ P++ +KP+ + GV + D+
Sbjct: 130 GSSAGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
VG D A L A+ G + S +P K R+G+VR
Sbjct: 190 VGLFGARAEDLARGLLAMTGRSEF-------SGIVP------------AKAPRIGVVRQE 230
Query: 316 F 316
F
Sbjct: 231 F 231
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 36/241 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLR 136
H IE + + D + +A+G LRG I + +KD I T + M T GS + R
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPLRG---IAVGIKDIIDTAN-MPTEMGSE-IYR 80
Query: 137 SVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195
PR DA VV+ L++AGA I+GK + + ++ S+ P+ NP+ P
Sbjct: 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTAT-------LNPHNTGHSPG 129
Query: 196 XXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
+ ++LGT+T GS++ P++ +KP+ + GV + D+
Sbjct: 130 GASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
VG D A L A+ G + S +P K R+G+VR
Sbjct: 190 VGLFGARAEDLARGLLAMTGRSEF-------SGIVP------------AKAPRIGVVRQE 230
Query: 316 F 316
F
Sbjct: 231 F 231
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 30/234 (12%)
Query: 52 KQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGI 111
+ +++ +L+E + + +NP ++ VI + +KA E ++ A+G G+
Sbjct: 18 RSGEISRTELLEATIAHVQAVNPEINAVI------IPLFEKARRESEL-ASGPF---AGV 67
Query: 112 PILLKD-NIATKDKMNTTAGSYALLRSVVPR---DAGVVVKLRKAGAIILGKASLSEWSN 167
P LLKD + ++ +NT+ S ++ R DA V ++R AG ++LGK + E N
Sbjct: 68 PYLLKDLTVVSQGDINTS--SIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN 125
Query: 168 FRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSS 227
+ + P + G +NP+ L L+ V+ G + G++ P+S
Sbjct: 126 -QVTTEPEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPAS 180
Query: 228 SNSVVGLKPTLGLTSRAGVIPITPRQDSV------GPICRTVADAAYVLDAIAG 275
VVGLKPT G S P+ D+V G R+V D A +LD ++G
Sbjct: 181 VCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSG 231
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 402 LEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR-DGFEKLMSTNNLDALVTPRSYA 460
+E+ E G DLL+ T +T + L L + T +G + + +L L
Sbjct: 373 VERWWEAGWDLLILPTVTR---QTPEIGELMLAKGTDLEGRQSAFISGSLQMLAF----- 424
Query: 461 STLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
+ V G P I++P G S+G+P G+ G E L+++A E A
Sbjct: 425 TVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGA 473
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 36/241 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLR 136
H IE + + D + +A+G LRG I + +KD I T + M T GS + R
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPLRG---IAVGIKDIIDTAN-MPTEMGSE-IYR 80
Query: 137 SVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195
PR DA VV+ L++AGA I+GK + + ++ S+ P+ NP+ P
Sbjct: 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTAT-------LNPHNTGHSPG 129
Query: 196 XXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
+ ++LGT+T GS++ P++ +KP+ + GV + D+
Sbjct: 130 GSSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
VG D A L A+ G + S +P K R+G+VR
Sbjct: 190 VGLFGARAEDLARGLLAMTGRSEF-------SGIVP------------AKAPRIGVVRQE 230
Query: 316 F 316
F
Sbjct: 231 F 231
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 36/241 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLR 136
H IE + + D + +A+G LRG I + +KD I T + M T GS + R
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPLRG---IAVGIKDIIDTAN-MPTEMGSE-IYR 80
Query: 137 SVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195
PR DA VV+ L++AGA I+GK + + ++ S+ P+ NP+ P
Sbjct: 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTAT-------LNPHNTGHSPG 129
Query: 196 XXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
+ ++LGT+T GS++ P++ +KP+ + GV + D+
Sbjct: 130 ASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
VG D A L A+ G + S +P K R+G+VR
Sbjct: 190 VGLFGARAEDLARGLLAMTGRSEF-------SGIVP------------AKAPRIGVVRQE 230
Query: 316 F 316
F
Sbjct: 231 F 231
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 36/241 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLR 136
H IE + + D + +A+G LRG I + +KD I T + M T GS + R
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPLRG---IAVGIKDIIDTAN-MPTEMGSE-IYR 80
Query: 137 SVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195
PR DA VV+ L++AGA I+GK + + ++ S+ P+ NP+ P
Sbjct: 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTAT-------LNPHNTGHSPG 129
Query: 196 XXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
+ ++LGT+T GS++ P++ +KP+ + GV + D+
Sbjct: 130 GSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
VG D A L A+ G + S +P K R+G+VR
Sbjct: 190 VGLFGARAEDLARGLLAMTGRSEF-------SGIVP------------AKAPRIGVVRQE 230
Query: 316 F 316
F
Sbjct: 231 F 231
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLR 136
H IE + + D + +A+G LRG I + +KD I T + M T GS + R
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPLRG---IAVGIKDIIDTAN-MPTEMGSE-IYR 80
Query: 137 SVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195
PR DA VV+ L++AGA I+GK + + ++ S+ P+ NP+ P
Sbjct: 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTAT-------LNPHNTGHSPG 129
Query: 196 XXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
+ ++LGT+T G ++ P++ +KP+ + GV + D+
Sbjct: 130 GSSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
VG D A L A+ G + S +P K R+G+VR
Sbjct: 190 VGLFGARAEDLARGLLAMTGRSEF-------SGIVP------------AKAPRIGVVRQE 230
Query: 316 F 316
F
Sbjct: 231 F 231
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLR 136
H IE + + D + +A+G LRG I + +KD I T + M T GS + R
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPLRG---IAVGIKDIIDTAN-MPTEMGSE-IYR 80
Query: 137 SVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195
PR DA VV+ L++AGA I+GK + + ++ S+ P+ NP+ P
Sbjct: 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTAT-------LNPHNTGHSPG 129
Query: 196 XXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
+ ++LG +T GS++ P++ +KP+ + GV + D+
Sbjct: 130 GSSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
VG D A L A+ G + S +P K R+G+VR
Sbjct: 190 VGLFGARAEDLARGLLAMTGRSEF-------SGIVP------------AKAPRIGVVRQE 230
Query: 316 F 316
F
Sbjct: 231 F 231
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLR 136
H IE + + D + +A+G LRG I + + D I T + M T GS + R
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPLRG---IAVGIADIIDTAN-MPTEMGSE-IYR 80
Query: 137 SVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195
PR DA VV+ L++AGA I+GK + + ++ S+ P+ NP+ P
Sbjct: 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTAT-------LNPHNTGHSPG 129
Query: 196 XXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
+ ++LGT+T GS++ P++ +KP+ + GV + D+
Sbjct: 130 GSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
VG D A L A+ G + S +P K R+G+VR
Sbjct: 190 VGLFGARAEDLARGLLAMTGRSEF-------SGIVP------------AKAPRIGVVRQE 230
Query: 316 F 316
F
Sbjct: 231 F 231
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 14/176 (7%)
Query: 94 DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVK--LRK 151
D E ++ A L+G+P+ LK+ + K +T S L +P ++ VV L+
Sbjct: 90 DCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLS---LNEGMPSESDCVVVQVLKL 146
Query: 152 AGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAA 211
GA+ ++ + S F + F GQ NP+ S P +
Sbjct: 147 QGAVPFVHTNVPQ-SMFSYDCSNPLF----GQTMNPWKSSKSPGGSSGGEGALIGSGGSP 201
Query: 212 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 263
+ LGT+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 202 LGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 257
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 94 DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPR--DAGVVVKLRK 151
D E ++ A L+G+P+ LK+ + K +T S L +P D VV L+
Sbjct: 114 DCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLS---LNEGMPSESDCVVVQVLKL 170
Query: 152 AGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAA 211
GA+ ++ + S F + F GQ NP+ S P +
Sbjct: 171 QGAVPFVHTNVPQ-SMFSYDCSNPLF----GQTMNPWKSSKSPGGSSGGEGALIGSGGSP 225
Query: 212 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 263
+ LGT+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 226 LGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 281
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 14/176 (7%)
Query: 94 DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVK--LRK 151
D E ++ A L+G+P+ LK+ + K +T S L +P ++ VV L+
Sbjct: 128 DCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLS---LNEGMPSESDCVVVQVLKL 184
Query: 152 AGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAA 211
GA+ ++ + S F + F GQ NP+ S P +
Sbjct: 185 QGAVPFVHTNVPQ-SMFSYDCSNPLF----GQTMNPWKSSKSPGGSSGGEGALIGSGGSP 239
Query: 212 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 263
+ LGT+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 240 LGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 295
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 94 DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVK--LRK 151
D E ++ A L+G+P+ LK+ + K +T S L +P ++ VV L+
Sbjct: 84 DCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLS---LNEGMPSESDCVVVQVLKL 140
Query: 152 AGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAA 211
GA+ ++ + S + F GQ NP+ S P +
Sbjct: 141 QGAVPFVHTNVPQ-SMLSFDCSNPLF----GQTMNPWKSSKSPGGSSGGEGALIGSGGSP 195
Query: 212 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 263
+ LGT+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 196 LGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 251
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 94 DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPR--DAGVVVKLRK 151
D E ++ A L+G+P+ LK+ + K +T S L +P D VV L+
Sbjct: 110 DCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLS---LNEGMPSESDCVVVQVLKL 166
Query: 152 AGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAA 211
GA+ ++ + S + F GQ NP+ S P +
Sbjct: 167 QGAVPFVHTNVPQ-SMLSFDCSNPLF----GQTMNPWKSSKSPGGSSGGEGALIGSGGSP 221
Query: 212 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 263
+ LGT+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 222 LGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 277
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 94 DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPR--DAGVVVKLRK 151
D E ++ A L+G+P+ LK+ + K +T S L +P D VV L+
Sbjct: 91 DCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLS---LNEGMPSESDCVVVQVLKL 147
Query: 152 AGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAA 211
GA+ ++ + S + F GQ NP+ S P +
Sbjct: 148 QGAVPFVHTNVPQ-SMLSFDCSNPLF----GQTMNPWKSSKSPGGSSGGEGALIGSGGSP 202
Query: 212 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 263
+ LGT+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 203 LGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 258
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 94 DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVK--LRK 151
D E ++ A L+G+P+ LK+ + K +T S L +P ++ VV L+
Sbjct: 128 DCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLS---LNEGMPSESDCVVVQVLKL 184
Query: 152 AGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAA 211
GA+ ++ + S + F GQ NP+ S P +
Sbjct: 185 QGAVPFVHTNVPQ-SMLSFDCSNPLF----GQTMNPWKSSKSPGGSSGGEGALIGSGGSP 239
Query: 212 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 263
+ LGT+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 240 LGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 295
>pdb|1OQS|B Chain B, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|D Chain D, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|F Chain F, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|H Chain H, Crystal Structure Of Rv4RV7 COMPLEX
Length = 122
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 488 CFGGLKGTEPKLIEIAYGFEQA 509
C+GG+KG PKL +Y F++
Sbjct: 50 CYGGVKGCNPKLAIYSYSFQRG 71
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 319 FDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYL 378
FDE DH LH+ R++ D L + ++ S TA+ E K AI A +
Sbjct: 529 FDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKM 588
Query: 379 KEL 381
+EL
Sbjct: 589 QEL 591
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,479,520
Number of Sequences: 62578
Number of extensions: 602113
Number of successful extensions: 1463
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1386
Number of HSP's gapped (non-prelim): 35
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)