Query 010029
Match_columns 520
No_of_seqs 312 out of 1329
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 18:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m22_A Peptide amidase, PAM; e 100.0 1E-107 5E-112 868.8 46.4 471 35-520 4-494 (503)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 6E-106 2E-110 852.9 40.3 448 38-514 2-480 (485)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 2E-104 6E-109 837.8 35.0 446 39-519 2-478 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 1E-102 4E-107 821.7 33.8 434 42-515 1-464 (471)
5 2dc0_A Probable amidase; struc 100.0 9E-102 3E-106 809.3 38.7 404 42-510 1-433 (434)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 6E-101 2E-105 817.0 39.6 430 36-513 3-477 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 1E-100 4E-105 811.5 30.1 438 35-517 3-468 (476)
8 3ppm_A Fatty-acid amide hydrol 100.0 2.5E-97 9E-102 793.1 32.7 444 36-517 65-573 (573)
9 1o9p_A Malonamidase E2; malona 100.0 2.4E-96 8E-101 763.1 36.8 393 42-511 2-411 (414)
10 3a1k_A Amidase; AS family enzy 100.0 5.2E-97 2E-101 787.9 17.9 448 42-515 13-507 (521)
11 3shg_B VBHA; ampylation, adeny 56.1 14 0.00049 26.0 4.0 28 44-71 32-59 (61)
12 3r4k_A Transcriptional regulat 32.2 54 0.0018 30.5 5.3 51 465-516 192-252 (260)
13 3obf_A Putative transcriptiona 29.9 60 0.0021 27.9 4.9 48 466-514 118-175 (176)
14 1zrj_A E1B-55KDA-associated pr 29.3 36 0.0012 23.1 2.5 39 34-72 5-43 (50)
15 2do1_A Nuclear protein HCC-1; 27.7 29 0.00099 24.1 1.8 39 34-72 5-43 (55)
No 1
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=1.5e-107 Score=868.84 Aligned_cols=471 Identities=45% Similarity=0.738 Sum_probs=400.3
Q ss_pred CcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCccEEEecCHhHHHHHHHHhHHHHHhcCCCCCCcccc
Q 010029 35 HAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGI 111 (520)
Q Consensus 35 ~~~~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~Gv 111 (520)
..|++.++|+.+|+++|++|++|++||+++||+||+++| +.+|||+++++||+++|+++|+++ ++|+..||||||
T Consensus 4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~Gv 81 (503)
T 1m22_A 4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLHGI 81 (503)
T ss_dssp -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTTTC
T ss_pred CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH--HcCCCCCCcCCc
Confidence 467888999999999999999999999999999999999 999999999988999999999988 788889999999
Q ss_pred eeeeecccCccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 010029 112 PILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLS 191 (520)
Q Consensus 112 Pi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~ 191 (520)
||+|||||+++| ++||+||..|+++++ +||++|+|||+|||||+||||||||+++.++.+..|+|++||+|+||||++
T Consensus 82 Pi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~ 159 (503)
T 1m22_A 82 PLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS 159 (503)
T ss_dssp EEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred eeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999997 999999999999999 999999999999999999999999998665556789999999999999999
Q ss_pred CCCCCCChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHH
Q 010029 192 ADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 271 (520)
Q Consensus 192 ~~pGGSSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~ 271 (520)
|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++++
T Consensus 160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~ 239 (503)
T 1m22_A 160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239 (503)
T ss_dssp BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCc
Q 010029 272 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGN 351 (520)
Q Consensus 272 ~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~ 351 (520)
+|+|+|+.|+.+...+. .+..+|...+....++++||||+.+++ . ++++++++++++++.|+++||+|++ +++|.
T Consensus 240 vl~g~d~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~ 314 (503)
T 1m22_A 240 AIAGRDDADPATATMPG-RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-VELPN 314 (503)
T ss_dssp HHCCCCTTCGGGGGCTT-CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-ECCTT
T ss_pred HHcCCCCCCcccccccc-ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-eCCCc
Confidence 99999999976543210 011245544432356899999998754 2 7899999999999999999999997 78876
Q ss_pred chhhhccchhhHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHhhhcHHHHHHhhhcCCC-CHHHHHHH
Q 010029 352 INSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGI-GKTEKAAI 430 (520)
Q Consensus 352 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~ 430 (520)
+++.. ..++.++..|+..++..|+.... .+.+.+.+++.++..++. +....++++++........+ ..+|.+++
T Consensus 315 ~~~~~---~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 389 (503)
T 1m22_A 315 QGAWA---EAERTLLLYEFKAGLERYFNTHR-APLRSLADLIAFNQAHSK-QELGLFGQELLVEADATAGLADPAYIRAR 389 (503)
T ss_dssp TTTTH---HHHHHHHHHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHTHH-HHSSSSCCHHHHHHHTCCCTTCHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHHHHhhhcch-hcccccCHHHHHHHHhcCCCCHHHHHHHH
Confidence 55332 23356677888888888887653 344556666554322210 11223555555554444433 35666666
Q ss_pred HHHHHHHHHH-HHHHHHhCCCCEEEecCCc---------------chHhhhhcCCCeeeeccCCCCCCCceeEEEEccCC
Q 010029 431 LNLERFTRDG-FEKLMSTNNLDALVTPRSY---------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKG 494 (520)
Q Consensus 431 ~~~r~~~~~~-~~~~~~~~~~D~Ll~Pt~~---------------~t~~~Nl~G~PaisVP~G~~~~GlPvGlQlvg~~~ 494 (520)
++++++.+++ +.++|+++++|+||+|+++ +|.+||++|+|+||||+|++ +|||+||||||++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~ 468 (503)
T 1m22_A 390 SDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAW 468 (503)
T ss_dssp HHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEEeCCCccCcccccccCcccccccccchhhCCCeEEeccccC-CCCCeEEEEECCCC
Confidence 6666665443 9999987679999999863 67899999999999999987 89999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCCCCC
Q 010029 495 TEPKLIEIAYGFEQATKIRKPPSFKS 520 (520)
Q Consensus 495 ~D~~LL~~A~~lE~~~~~~~~P~~~~ 520 (520)
+|++||++|++||++++|+++|.+.|
T Consensus 469 ~d~~lL~~A~~~E~~~~~~~~p~~~~ 494 (503)
T 1m22_A 469 SEPKLIEMAYAYEQRTRARRPPHFDT 494 (503)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred ChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 99999999999999999999998876
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=5.7e-106 Score=852.94 Aligned_cols=448 Identities=27% Similarity=0.409 Sum_probs=372.8
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHh-HHHHHHHHhHHHHHhcCCCCCCcccceeeee
Q 010029 38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLK 116 (520)
Q Consensus 38 ~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK 116 (520)
++.++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++. ++|+. ||||||||+||
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~-~~g~~-gpL~GvPi~vK 79 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQA-KDQMD-GKLFGIPMGIK 79 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH-TTCCC-STTTTCEEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHH-hcCCC-CCcCCCEEEEE
Confidence 578899999999999999999999999999999999999999999999 9999999998752 56777 99999999999
Q ss_pred cccCccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010029 117 DNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCG 196 (520)
Q Consensus 117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~pGG 196 (520)
|||+++| ++||+||..++++++.+||++|+|||+||||++||||||||++ +..++|++||+|+||||++|+|||
T Consensus 80 D~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~t~n~~~G~t~NP~~~~~~pGG 153 (485)
T 3ip4_A 80 DNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPGG 153 (485)
T ss_dssp TTBCBTT-BCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCS
T ss_pred cCcccCC-CccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCccccc-----CCCCCCCCCCCcCCccccCcCCCC
Confidence 9999997 9999999999999999999999999999999999999999998 778899999999999999999999
Q ss_pred CChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHHHHhCC
Q 010029 197 SSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGF 276 (520)
Q Consensus 197 SSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~~l~g~ 276 (520)
||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+
T Consensus 154 SSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~ 233 (485)
T 3ip4_A 154 SSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233 (485)
T ss_dssp SSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSC
T ss_pred CccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCcchhhh
Q 010029 277 DHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLN 356 (520)
Q Consensus 277 d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~ 356 (520)
|+.|+.+... |..+|...+. .+++++||||+.+++.. .++++|+++++++++.|+++||+|++ +++|.++...
T Consensus 234 d~~d~~~~~~----~~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~~~~ 306 (485)
T 3ip4_A 234 DVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNTKFGI 306 (485)
T ss_dssp CTTCTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH
T ss_pred Cccccccccc----Cccchhhhhc-cCccCcEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHHHHH
Confidence 9999766532 3234554443 46789999999886543 68999999999999999999999998 7888765443
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhcc---CCcccHHHHHHhhccccchHHHhhhcHHHHHHhh-----hcCCC-CHHHH
Q 010029 357 SIANDETTAMLAEFKLAINAYLKELVT---SPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAE-----ATDGI-GKTEK 427 (520)
Q Consensus 357 ~~~~~~~~~~~~e~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~ 427 (520)
..+..++..|+..++.+|...... ....++.++.... +...+++++..... ..... ...|.
T Consensus 307 ---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (485)
T 3ip4_A 307 ---PSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMS-------RSEGFGKEVKRRIFLGTFALSSGYYDAYYK 376 (485)
T ss_dssp ---HHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHH-------HHHHSCHHHHHHHHHHHHHHSTTTTTTTHH
T ss_pred ---HHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhh-------hhhhcCHHHHHHHHhccccccchhhHHHHH
Confidence 334556677777665444221110 1122333332211 11123333321111 11111 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEecCCc---------------------chHhhhhcCCCeeeeccCCCCCCCcee
Q 010029 428 AAILNLERFTRDGFEKLMSTNNLDALVTPRSY---------------------ASTLLAVGGFPGINVPAGYDSEGVPFG 486 (520)
Q Consensus 428 ~a~~~~r~~~~~~~~~~~~~~~~D~Ll~Pt~~---------------------~t~~~Nl~G~PaisVP~G~~~~GlPvG 486 (520)
++ ++.|..+++.+.++|+ ++|+||+|+++ +|.+||++|+|++|||+|++ +|||+|
T Consensus 377 ~a-~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvG 452 (485)
T 3ip4_A 377 KS-QKVRTLIKNDFDKVFE--NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIG 452 (485)
T ss_dssp HH-HHHHHHHHHHHHHHHT--TCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEE
T ss_pred HH-HHHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEe
Confidence 44 4445555677999997 59999999974 46789999999999999998 999999
Q ss_pred EEEEccCCChHHHHHHHHHHHHHcCCCC
Q 010029 487 ICFGGLKGTEPKLIEIAYGFEQATKIRK 514 (520)
Q Consensus 487 lQlvg~~~~D~~LL~~A~~lE~~~~~~~ 514 (520)
|||+|++|+|++||++|++||++++|+.
T Consensus 453 lqlvg~~~~d~~lL~~A~~lE~~~~~~~ 480 (485)
T 3ip4_A 453 LQFIGKPFDEKTLYRVAYQYETQYNLHD 480 (485)
T ss_dssp EEEECSTTCHHHHHHHHHHHHHHSCCTT
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999864
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.8e-104 Score=837.78 Aligned_cols=446 Identities=27% Similarity=0.389 Sum_probs=370.6
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHh-HHHHHHHHhHHHHHhcCCCCCCcccceeeeec
Q 010029 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKD 117 (520)
Q Consensus 39 ~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD 117 (520)
+.++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|++ .||||||||+|||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~--------~gpL~GvPi~vKD 73 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER--------ELPLFGIPIAVKD 73 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT--------TSTTTTCEEEEET
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh--------cCCcCCceEEEEc
Confidence 56789999999999999999999999999999999999999999999 99999988742 6899999999999
Q ss_pred ccCccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010029 118 NIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGS 197 (520)
Q Consensus 118 ~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~pGGS 197 (520)
||+++| ++||+||+.+.++++.+||++|+|||+||||++||||||||++ +..++|++||+|+||||++|+||||
T Consensus 74 ~~~~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGS 147 (478)
T 3h0l_A 74 NILVEG-EKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAM-----GSSTEYSAFFPTKNPWDLERVPGGS 147 (478)
T ss_dssp TBCCTT-SBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCCTTCTTBCCCSS
T ss_pred CccCCC-CCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhc-----CCCCCCCCCCCcCCCccCCCCCCcc
Confidence 999997 9999999999999999999999999999999999999999998 6788999999999999999999999
Q ss_pred ChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHHHHhCCC
Q 010029 198 SSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFD 277 (520)
Q Consensus 198 SgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~~l~g~d 277 (520)
|||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|
T Consensus 148 SgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d 227 (478)
T 3h0l_A 148 SGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWD 227 (478)
T ss_dssp SHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred hHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCcchhhhc
Q 010029 278 HYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNS 357 (520)
Q Consensus 278 ~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~ 357 (520)
+.|+.+... |..+|...+. .+++++||||+.+++.. .++++|+++++++++.|+++||+|++ +++|.++...
T Consensus 228 ~~d~~~~~~----p~~~~~~~~~-~~~~~lrIgv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~~~- 299 (478)
T 3h0l_A 228 EKDSTSAKV----PVPEWSEEVK-KEVKGLKIGLPKEFFEY-ELQPQVKEAFENFIKELEKEGFEIKE-VSLPHVKYSI- 299 (478)
T ss_dssp TTCTTSCCC----CCCCHHHHTT-CCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH-
T ss_pred ccccccccc----Cccchhhhhc-cCCCCCEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHHHHH-
Confidence 999766532 3334544443 46789999999886544 68999999999999999999999998 7888765543
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhccC---CcccHHHHHHhhccccchHHHhhhcHHHHHHhhh-----cCCCC-HHHHH
Q 010029 358 IANDETTAMLAEFKLAINAYLKELVTS---PVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEA-----TDGIG-KTEKA 428 (520)
Q Consensus 358 ~~~~~~~~~~~e~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~ 428 (520)
..+..++..|+..++.+|....... ...++.++.... +...+++++...... ...+. .+|.+
T Consensus 300 --~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 370 (478)
T 3h0l_A 300 --PTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYART-------RDEGFGPEVKRRIMLGTFALSAGYYDAYYLK 370 (478)
T ss_dssp --HHHHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHH-------HHHHSCHHHHHHHHHHHHHTSTTTTTTTHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHh-------hhhhcCHHHHHHHHhhchhccchhhHHHHHH
Confidence 3345666777777655443211111 112333332211 112233333221111 11111 22334
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEecCCc---------------------chHhhhhcCCCeeeeccCCCCCCCceeE
Q 010029 429 AILNLERFTRDGFEKLMSTNNLDALVTPRSY---------------------ASTLLAVGGFPGINVPAGYDSEGVPFGI 487 (520)
Q Consensus 429 a~~~~r~~~~~~~~~~~~~~~~D~Ll~Pt~~---------------------~t~~~Nl~G~PaisVP~G~~~~GlPvGl 487 (520)
+ ++.|...++.+.++|+ ++|+||+||++ +|.+||++|+|++|||+|+ .+|||+||
T Consensus 371 a-~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGl 446 (478)
T 3h0l_A 371 A-QKVRRLITNDFLKAFE--EVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGG 446 (478)
T ss_dssp H-HHHHHHHHHHHHHHTT--TCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEE
T ss_pred H-HHHHHHHHHHHHHHHh--cCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEE
Confidence 4 3445555677999997 59999999974 4678999999999999999 79999999
Q ss_pred EEEccCCChHHHHHHHHHHHHHcCCCCCCCCC
Q 010029 488 CFGGLKGTEPKLIEIAYGFEQATKIRKPPSFK 519 (520)
Q Consensus 488 Qlvg~~~~D~~LL~~A~~lE~~~~~~~~P~~~ 519 (520)
||+|++|+|++||++|++||++++|+..++|+
T Consensus 447 Qlvg~~~~D~~LL~~A~~lE~~~~~~~~~p~~ 478 (478)
T 3h0l_A 447 QLIGKHWDETTLLQISYLWEQKFKHYEKIPLT 478 (478)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHSCGGGCCSCC
T ss_pred EEECCCCCHHHHHHHHHHHHHhcCcccCCCCC
Confidence 99999999999999999999999998766654
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-102 Score=821.69 Aligned_cols=434 Identities=27% Similarity=0.406 Sum_probs=360.9
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHh-HHHHHHHHhHHHHHhcCCCCCCcccceeeeecccC
Q 010029 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIA 120 (520)
Q Consensus 42 ~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (520)
|++.+|+++|++|++|++||+++||+||+++|+.+|||++++ | |+++|+++|++ .|||||||+|||||+
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~---------~pL~GvPi~vKD~~~ 70 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPG---------LPLAGLVVAVKDNIA 70 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCS---------CTTTTCEEEEETTBC
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCcc---------CCcCCCeEEEECCcc
Confidence 579999999999999999999999999999999999999999 8 99999987742 199999999999999
Q ss_pred ccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 010029 121 TKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSG 200 (520)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~pGGSSgG 200 (520)
++| ++||+||+.++++++.+||++|+|||+||||++||||||||++ +..++|++||+|+||||++++|||||||
T Consensus 71 ~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgG 144 (471)
T 3kfu_E 71 TRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGM-----GSSTEHSAFFPTKNPFDPDRVPGGSSGG 144 (471)
T ss_dssp CTT-SCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred cCC-ccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhc-----CCCCCCCCCCCcCCCCccCcCCCCCcHH
Confidence 997 9999999999999999999999999999999999999999998 6788999999999999999999999999
Q ss_pred HHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHHHHhCCCCCC
Q 010029 201 SAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 280 (520)
Q Consensus 201 saaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~~l~g~d~~d 280 (520)
||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+|+.|
T Consensus 145 saaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d 224 (471)
T 3kfu_E 145 SAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLD 224 (471)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTC
T ss_pred HHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCcchhhhccch
Q 010029 281 PATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIAN 360 (520)
Q Consensus 281 ~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~ 360 (520)
+.+... | .+|...+. .+++++||||+.+++ ..+|++++++++++++.|+++||+|++ +++|.++... .
T Consensus 225 ~~~~~~----~-~~~~~~~~-~~~~~lrIgv~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~~~---~ 292 (471)
T 3kfu_E 225 ATSLDL----P-PRFQEALE-GPLPPLRLGVVREAL--AGNSPGVERALEEALKVFRELGLSVRE-VSWPSLPQAL---A 292 (471)
T ss_dssp TTCCCC----C-CCTTCCSC-CCCSSCEEEEEGGGT--TTCCHHHHHHHHHHHHHHHTTTCEEEE-ECCTTGGGHH---H
T ss_pred ccccCC----C-cchhhhhc-cCCCCCEEEEECCcc--CCCCHHHHHHHHHHHHHHHHcCCeeee-ecCccHHHHH---H
Confidence 765532 2 24544333 357899999998865 368999999999999999999999998 7888765543 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCC--cccHHHHHHhhccccchHHHhhhcHHHHHHhhh-----cCCC-CHHHHHHHHH
Q 010029 361 DETTAMLAEFKLAINAYLKELVTSP--VRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEA-----TDGI-GKTEKAAILN 432 (520)
Q Consensus 361 ~~~~~~~~e~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~a~~~ 432 (520)
.+..++..|+..++.+|........ ...+.+++...+ ..+++++...... ...+ ..+|.++. +
T Consensus 293 ~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~-~ 363 (471)
T 3kfu_E 293 AYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATR--------ALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQ-A 363 (471)
T ss_dssp HHHHHHHHHHHHHGGGCSTTTTSCCCCCSSSHHHHHHHH--------TTSCHHHHHHHHHHHHHHSTTTTTTTHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhh--------hhcCHHHHHHHHhcccccccccCHHHHHHHH-H
Confidence 3456667787776655433211111 122333322211 1133333211111 1111 12344444 4
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCc--------------------chHhhhhcCCCeeeeccCCCCCCCceeEEEEcc
Q 010029 433 LERFTRDGFEKLMSTNNLDALVTPRSY--------------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGL 492 (520)
Q Consensus 433 ~r~~~~~~~~~~~~~~~~D~Ll~Pt~~--------------------~t~~~Nl~G~PaisVP~G~~~~GlPvGlQlvg~ 492 (520)
.|...++.+.++|+ ++|+||+|+++ +|.+||++|+|++|||+|+ .+|||+||||+|+
T Consensus 364 ~r~~~~~~~~~~~~--~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~ 440 (471)
T 3kfu_E 364 FRRRLKAEAQALFR--EVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAP 440 (471)
T ss_dssp HHHHHHHHHHHHTT--TCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECS
T ss_pred HHHHHHHHHHHHHh--cCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEEEECC
Confidence 44455677999997 59999999975 4668999999999999999 8999999999999
Q ss_pred CCChHHHHHHHHHHHHHc-CCCCC
Q 010029 493 KGTEPKLIEIAYGFEQAT-KIRKP 515 (520)
Q Consensus 493 ~~~D~~LL~~A~~lE~~~-~~~~~ 515 (520)
+|+|++||++|++||++. +|+..
T Consensus 441 ~~~D~~LL~~A~~lE~~~g~w~~~ 464 (471)
T 3kfu_E 441 WGEDERLLRAALAFEEATARAHLK 464 (471)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCHHHHHHHHHHHHHHhcCcccC
Confidence 999999999999999999 88643
No 5
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=8.9e-102 Score=809.25 Aligned_cols=404 Identities=25% Similarity=0.334 Sum_probs=347.5
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHh-HHHHHHHHhHHHHHhcCCCCCCcccceeeeecccC
Q 010029 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIA 120 (520)
Q Consensus 42 ~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (520)
+|+.+|+++|++|++|++|++++||+||+++|+ +|||+++++| |+++|+++|+++ ++|+.+||||||||+|||||+
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD~~~ 77 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEEL--RRGQVRGPLHGLPLTVKDLFP 77 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEEETTSC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHH--hcCCCCCCcCCeeEEEEeccc
Confidence 478999999999999999999999999999999 9999999998 999999999988 789889999999999999999
Q ss_pred ccCCccccccchhhcCCCC-CCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 010029 121 TKDKMNTTAGSYALLRSVV-PRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSS 199 (520)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~-~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~pGGSSg 199 (520)
++| ++||+||..| ++| .+||++|+|||+||||++||||||||++ +..|+|++||+|+||||++|+||||||
T Consensus 78 v~G-~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~pGGSSg 149 (434)
T 2dc0_A 78 VKG-MPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIAL-----GITGENPWTGPVRNAVDPSRQAGGSSG 149 (434)
T ss_dssp BTT-BCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGC-----CSSCCCTTTCCCBCSSCTTBBCCSSSH
T ss_pred cCC-cccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhc-----CCCCCCCCCCCCCCCCCCCCCCcccHH
Confidence 997 9999999999 677 8999999999999999999999999998 778899999999999999999999999
Q ss_pred hHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHHHHhCCCCC
Q 010029 200 GSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHY 279 (520)
Q Consensus 200 GsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~~l~g~d~~ 279 (520)
|||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+ +.
T Consensus 150 GsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~ 228 (434)
T 2dc0_A 150 GSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SI 228 (434)
T ss_dssp HHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CC
T ss_pred HHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 65
Q ss_pred CCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCcchhhhccc
Q 010029 280 DPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIA 359 (520)
Q Consensus 280 d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~ 359 (520)
|+ .+++++||||+.+.++. +++++++++++++++.|+++||+|++ +++| ++...
T Consensus 229 d~--------------------~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p-~~~~~--- 282 (434)
T 2dc0_A 229 PL--------------------EGVQNPVFGVPLDFLEG-RLGVEVRKAFTRLLEDLPALRAEVRE-VSLP-LEGVY--- 282 (434)
T ss_dssp CC--------------------CCCCSCEEEECHHHHTT-CSCHHHHHHHHHHHHHTTTTTCEEEE-CCCC-CTTHH---
T ss_pred Cc--------------------ccccCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC-cHHHH---
Confidence 52 13467999999876544 68999999999999999999999998 7877 55432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHhhhcHHHHHHhhhcCCCC-HHHHHHHHHHHHHHH
Q 010029 360 NDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIG-KTEKAAILNLERFTR 438 (520)
Q Consensus 360 ~~~~~~~~~e~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~r~~~~ 438 (520)
..+..++..|....+..++... ...+++.+......+..++ .+|.+++ +.|..++
T Consensus 283 ~~~~~~~~~e~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~a~-~~r~~~~ 338 (434)
T 2dc0_A 283 EVYTRLVRYEAARIHEKALKEH-----------------------PEGFSPQVREALLAGLALTEKDYRDAV-AEREALR 338 (434)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHC-----------------------GGGSCHHHHHHHHHHHHSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------------------hhhcCHHHHHHHHhcCCCCHHHHHHHH-HHHHHHH
Confidence 2334555667665544433210 1123333332222222233 3444444 4445556
Q ss_pred HHHHHHHHhCCCCEEEecCCc--------------------------chHhhhhcCCCeeeeccCCCCCCCceeEEEEcc
Q 010029 439 DGFEKLMSTNNLDALVTPRSY--------------------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGL 492 (520)
Q Consensus 439 ~~~~~~~~~~~~D~Ll~Pt~~--------------------------~t~~~Nl~G~PaisVP~G~~~~GlPvGlQlvg~ 492 (520)
+.+.++|+ ++|+||+|+++ +|.+||++|+|++|||+|+ .+|||+||||+|+
T Consensus 339 ~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvqlvg~ 415 (434)
T 2dc0_A 339 LELVKALR--GVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQVVGA 415 (434)
T ss_dssp HHHHHHHT--TSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEEEECC
T ss_pred HHHHHHHh--cCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEEEECC
Confidence 77999997 59999999963 2457999999999999999 7999999999999
Q ss_pred CCChHHHHHHHHHHHHHc
Q 010029 493 KGTEPKLIEIAYGFEQAT 510 (520)
Q Consensus 493 ~~~D~~LL~~A~~lE~~~ 510 (520)
+|+|++||++|++||+++
T Consensus 416 ~~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 416 YGEDGKVLALGGWLEARL 433 (434)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHHhh
Confidence 999999999999999875
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=5.5e-101 Score=817.02 Aligned_cols=430 Identities=23% Similarity=0.275 Sum_probs=355.3
Q ss_pred cccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHh-HHHHHHHHhHHHHHhcCCCCCCcccceee
Q 010029 36 AFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPIL 114 (520)
Q Consensus 36 ~~~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~ 114 (520)
..++.+ ++.+|+++|++|++|++|++++||+||+++|+.+|||+++++| |+++|++ | .||||||||+
T Consensus 3 ~~~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d----------~gpL~GvPi~ 70 (493)
T 3a2q_A 3 KVDLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A----------SGPFAGVPYL 70 (493)
T ss_dssp -CCTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C----------CSTTTTCEEE
T ss_pred hhhhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c----------CCCcCCcEEE
Confidence 345667 9999999999999999999999999999999999999999999 9999876 5 3799999999
Q ss_pred eeccc-CccCCccccccchhhc--CCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 010029 115 LKDNI-ATKDKMNTTAGSYALL--RSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLS 191 (520)
Q Consensus 115 vKD~~-~~~gg~~tt~Gs~~~~--~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~ 191 (520)
||||| +++| ++||+||..++ ++++.+||++|+|||+|||||+||||||||++ +..|+|++||+|+||||++
T Consensus 71 vKD~~~~v~G-~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~ 144 (493)
T 3a2q_A 71 LKDLTVVSQG-DINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN-----QVTTEPEAWGATRNPWNLG 144 (493)
T ss_dssp EESSSSCCTT-SBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGC-----SSSCCCTTTCCCCBTTBTT
T ss_pred EecCCcCcCC-CcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhc-----CCCCCCCCCCCCCCCCCCC
Confidence 99999 9997 99999999999 99999999999999999999999999999998 6788999999999999999
Q ss_pred CCCCCCChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCC--C-CCCCCCcccCccccCHHHHHH
Q 010029 192 ADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGV--I-PITPRQDSVGPICRTVADAAY 268 (520)
Q Consensus 192 ~~pGGSSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~--~-p~~~~~d~~Gpmarsv~D~a~ 268 (520)
|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|+ + |+++++|++|||||||+|+++
T Consensus 145 ~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~ 224 (493)
T 3a2q_A 145 RSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAA 224 (493)
T ss_dssp BCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 5 888899999999999999999
Q ss_pred HHHHHhCCCCCCCccccccccCCCCcccccccCCCCCCceEEEecCCCC-CCCCChHHHHHHHHHHHHHHhCCCEEEecc
Q 010029 269 VLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFF-NFDEGSPLAQVFDHHLHTLRQEGALVIDHL 347 (520)
Q Consensus 269 ~~~~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~-~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~ 347 (520)
++++|.|+|+.|+.+... |..+|...+. ...+++||||+.+.++ ...++++++++++++++.|+++||+|++ +
T Consensus 225 ~l~~l~g~d~~d~~~~~~----p~~~~~~~~~-~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~ 298 (493)
T 3a2q_A 225 LLDVVSGHRPGDTFCAPT----ASRPYAQGIS-ENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-A 298 (493)
T ss_dssp HHHHHBSCCTTCSCCCCC----CSSCHHHHTT-SCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-C
T ss_pred HHHHHcCCCCCCcccccC----CCcchhhhcc-cCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-e
Confidence 999999999998665432 2223544332 3468899999988652 2368999999999999999999999998 6
Q ss_pred cCCcch--hhhccchhhHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHhhhcHHHHHHhhhcCCCC-H
Q 010029 348 EIGNIN--SLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIG-K 424 (520)
Q Consensus 348 ~~p~~~--~~~~~~~~~~~~~~~e~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 424 (520)
++|.++ ... ..+..++..|+...+..+...... + .+ ...+.+.++.....+..++ .
T Consensus 299 ~~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~-~------------~~-----~~~~~~~~~~~~~~g~~~~~~ 357 (493)
T 3a2q_A 299 YPEALGDRSFL---KDYSTICDVAIAREIERNGELIGR-P------------LT-----EDDVEWTSWEMVKRADQVTGR 357 (493)
T ss_dssp CCGGGGCCTHH---HHHHHHHHHHHHHHHHHHHHHHTS-C------------CC-----TTTSCHHHHHHHHHHHTCCHH
T ss_pred CCCccCHHHHH---HHHHHHHHHHHHHHHHHHHHHhcC-c------------cC-----hhhcCHHHHHHHHhhccCCHH
Confidence 766443 221 233455566766544333221110 0 00 0112222222222233334 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCCEEEecCCc---------------------------------chHhhhhcCCC
Q 010029 425 TEKAAILNLERFTRDGFEKLM-STNNLDALVTPRSY---------------------------------ASTLLAVGGFP 470 (520)
Q Consensus 425 ~~~~a~~~~r~~~~~~~~~~~-~~~~~D~Ll~Pt~~---------------------------------~t~~~Nl~G~P 470 (520)
+|.++++ .+..+++.+.++| + ++|+||+|+++ +|.+||++|+|
T Consensus 358 ~~~~a~~-~r~~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~P 434 (493)
T 3a2q_A 358 AFAACVD-ELRYYAGKVERWWEA--GWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQP 434 (493)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHT--TCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCC
T ss_pred HHHHHHH-HHHHHHHHHHHHHhc--CCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCC
Confidence 4444444 4444566799999 6 59999999853 34578999999
Q ss_pred eeeeccCCCCCCCceeEEEEccCCChHHHHHHHHHHHHHcCCC
Q 010029 471 GINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIR 513 (520)
Q Consensus 471 aisVP~G~~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~ 513 (520)
++|||+|++.+|||+||||||++|+|++||++|++||++++|+
T Consensus 435 aisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~lE~~~~~~ 477 (493)
T 3a2q_A 435 AISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWV 477 (493)
T ss_dssp EEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHHHHHHSCCT
T ss_pred ceeccCCcCCCCCCeEEEEecCCCChHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999883
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=1e-100 Score=811.52 Aligned_cols=438 Identities=27% Similarity=0.394 Sum_probs=349.6
Q ss_pred CcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHh-HHHHHHHHhHHHHHhcCCCCCCccccee
Q 010029 35 HAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPI 113 (520)
Q Consensus 35 ~~~~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi 113 (520)
..+++.++|+.+| |++|++|++|++++||+||+++|+.+|||+++++| |+ | + . ||||||||
T Consensus 3 ~~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d-----~---~-gpL~GvPi 64 (476)
T 2gi3_A 3 IDLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------E-----K---K-GKFWGIPV 64 (476)
T ss_dssp SCSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------C-----C---C-STTTTCEE
T ss_pred CccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------h-----c---c-CCcCCceE
Confidence 3567888899999 99999999999999999999999999999999988 66 2 1 2 89999999
Q ss_pred eeecccCccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010029 114 LLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD 193 (520)
Q Consensus 114 ~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~ 193 (520)
+|||||+++| ++||+||..++++++.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||++|+
T Consensus 65 ~vKD~~~v~G-~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~ 138 (476)
T 2gi3_A 65 AIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM-----GSSTERSAFFPTRNPWDLERV 138 (476)
T ss_dssp EEETTBCCSS-SCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBC
T ss_pred EEEcCccCCC-CccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhc-----CCCCCCCCCCCCCCCCCCCCC
Confidence 9999999997 9999999999999999999999999999999999999999998 778899999999999999999
Q ss_pred CCCCChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHHHH
Q 010029 194 PCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAI 273 (520)
Q Consensus 194 pGGSSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~~l 273 (520)
|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|
T Consensus 139 pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l 218 (476)
T 2gi3_A 139 PGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEII 218 (476)
T ss_dssp CCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCcch
Q 010029 274 AGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNIN 353 (520)
Q Consensus 274 ~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~ 353 (520)
+|+|+.|+.+... |. +|...+. .+++++||||+.+++.. .++++++++++++++.|+++||+|++ +++|.+.
T Consensus 219 ~g~d~~d~~~~~~----p~-~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~ 290 (476)
T 2gi3_A 219 SGRDENDATTVNR----KV-DFLSEIE-EGVSGMKFAVPEEIYEH-DIEEGVSERFEEALKLLERLGAKVER-VKIPHIK 290 (476)
T ss_dssp BSCBTTBTTCCSC----CC-CSSTTTT-SCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGG
T ss_pred hCCCCCCccccCC----Cc-chhhhhh-cCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchH
Confidence 9999988665432 22 3444333 35688999999886533 68999999999999999999999998 7887654
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHhccCCc--ccHHHHHHhhccccchHHHhhhcHHHHHHhhhcC-----CCCHHH
Q 010029 354 SLNSIANDETTAMLAEFKLAINAYLKELVTSPV--RSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATD-----GIGKTE 426 (520)
Q Consensus 354 ~~~~~~~~~~~~~~~e~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 426 (520)
... ..+..++..|+..++..|......... ..+.+++.... ...+++.+......+. .+...+
T Consensus 291 ~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 360 (476)
T 2gi3_A 291 YSV---ATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTR-------NVGFGEEVRRRIMIGTFTLSAAYYEAY 360 (476)
T ss_dssp GHH---HHHHHHHHHHHHTC------------------------CC-------SCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHhhh-------hhhcCHHHHHHHHhccccccchhhHHH
Confidence 432 233455566776665554432111000 11111111100 0112222221111110 001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCc--------------------chHhhhhcCCCeeeeccCCCCCCCcee
Q 010029 427 KAAILNLERFTRDGFEKLMSTNNLDALVTPRSY--------------------ASTLLAVGGFPGINVPAGYDSEGVPFG 486 (520)
Q Consensus 427 ~~a~~~~r~~~~~~~~~~~~~~~~D~Ll~Pt~~--------------------~t~~~Nl~G~PaisVP~G~~~~GlPvG 486 (520)
+...++.|..+++.++++|++ +|+||+|+++ +|.+||++|+|++|||+|++ +|||+|
T Consensus 361 ~~~a~~~r~~~~~~~~~~~~~--~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvG 437 (476)
T 2gi3_A 361 FNKAMKVRRKISDELNEVLSQ--YDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVG 437 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--SSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCCeE
Confidence 333344455556779999985 9999999974 45789999999999999987 899999
Q ss_pred EEEEccCCChHHHHHHHHHHHHHcCCCCCCC
Q 010029 487 ICFGGLKGTEPKLIEIAYGFEQATKIRKPPS 517 (520)
Q Consensus 487 lQlvg~~~~D~~LL~~A~~lE~~~~~~~~P~ 517 (520)
|||+|++|+|++||++|++||++++|++.+.
T Consensus 438 vqlvg~~~~d~~lL~~A~~lE~~~~~~~~~~ 468 (476)
T 2gi3_A 438 VQVIGRRFADGKVFRIARAIEKNSPYNENGM 468 (476)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHCTTSBTTB
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhcCcccccC
Confidence 9999999999999999999999999976643
No 8
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.5e-97 Score=793.10 Aligned_cols=444 Identities=21% Similarity=0.205 Sum_probs=349.7
Q ss_pred cccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHhHHHHHHHHhHHHHHhcCCCCCCcccceeee
Q 010029 36 AFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILL 115 (520)
Q Consensus 36 ~~~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~v 115 (520)
.-+|+++|+.+|+++|++|++|++||+++|++||++.|+.+|||+++++|++++|++++ ..||||||||+|
T Consensus 65 ~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a~~~a~~~~---------~~gpL~GvPi~v 135 (573)
T 3ppm_A 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAP---------RQGLLYGVPVSL 135 (573)
T ss_dssp HHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTHHHHHHHCC---------TTCTTTTCEEEE
T ss_pred hhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHHHHHHHhhh---------hcCCcCCCeEEE
Confidence 34578899999999999999999999999999999999999999999988766655432 238999999999
Q ss_pred ecccCccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010029 116 KDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPC 195 (520)
Q Consensus 116 KD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~pG 195 (520)
||||+++| ++||+||..+.++++.+||++|++||+||||++||||||||++ +..+.|++||+|+||||++++||
T Consensus 136 KD~~~~~G-~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~-----~~~~~n~~~G~t~NP~~~~~~~G 209 (573)
T 3ppm_A 136 KECFSYKG-HDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMF-----SYDCSNPLFGQTMNPWKSSKSPG 209 (573)
T ss_dssp ETTBCCBT-CCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSC-----SSSCEETTTEECCCTTCTTBCCC
T ss_pred EcccCCCC-CCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccc-----cCCCCCCCCCCcCCCCCCCCCCC
Confidence 99999997 9999999999999999999999999999999999999999998 67788999999999999999999
Q ss_pred CCChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCC----CcccCccccCHHHHHHHHH
Q 010029 196 GSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPR----QDSVGPICRTVADAAYVLD 271 (520)
Q Consensus 196 GSSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~----~d~~Gpmarsv~D~a~~~~ 271 (520)
|||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+++ +|++|||||||+|++++++
T Consensus 210 GSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~ 289 (573)
T 3ppm_A 210 GSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLK 289 (573)
T ss_dssp SSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHH
T ss_pred CCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876 8999999999999999999
Q ss_pred HHhCCCC--CCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccC
Q 010029 272 AIAGFDH--YDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEI 349 (520)
Q Consensus 272 ~l~g~d~--~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~ 349 (520)
+|.|.|+ .|+.... ..|.+.+. ...+++||||+.++++. .++|+++++++++++.|+++||+|++ +++
T Consensus 290 ~l~~~d~~~~d~~~~~-------~~~~~~~~-~~~~~lrigv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~ 359 (573)
T 3ppm_A 290 ALLCEHLFTLDPTVPP-------LPFREEVY-RSSRPLRVGYYETDNYT-MPSPAMRRALIETKQRLEAAGHTLIP-FLP 359 (573)
T ss_dssp HHSSHHHHHHCTTSCC-------CCCCHHHH-TCCCCCEEEECSCCSSS-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCC
T ss_pred HHhcccccccCCCCCc-------cccchhhc-ccCCCCEEEEEcccCCC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecC
Confidence 9999874 3433211 12443322 35688999999876654 57999999999999999999999998 788
Q ss_pred CcchhhhccchhhHHHHHHHHHHHHHHHHHHhccCCc--------------ccHHHHHHhhccccchHHHhhhcHHHHHH
Q 010029 350 GNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPV--------------RSLAEVIAFNNKFSDLEKIKEYGQDLLLS 415 (520)
Q Consensus 350 p~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (520)
|.+.+... ..+...+..+.... +...+..++. +++..+..+.. ..+.+.+...
T Consensus 360 p~~~~~~~--~~~~~~~~~dg~~~---~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~--------~~~~p~~~~~ 426 (573)
T 3ppm_A 360 NNIPYALE--VLSTGGLFSDGGRS---FLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLL--------KPLFPRLAAF 426 (573)
T ss_dssp TTHHHHHH--THHHHHHTTBTTHH---HHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHH--------TTTCHHHHHH
T ss_pred ccHHHHHH--HHHHHHHhhhhHHH---HHHHhccCcccHHHHHHhhhccchHHHHHHHHHHh--------hhcchHHHHH
Confidence 87654320 00011111122111 1111112111 11112221110 0111111111
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCc----------------chHhhhhcCCCeeeeccCCC
Q 010029 416 AEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSY----------------ASTLLAVGGFPGINVPAGYD 479 (520)
Q Consensus 416 ~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~Ll~Pt~~----------------~t~~~Nl~G~PaisVP~G~~ 479 (520)
.......+...+..+...++.+++++.+.|++.++|+||+|+.+ ||.+||++|+|+++||+|+.
T Consensus 427 ~~~~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vVPvg~v 506 (573)
T 3ppm_A 427 LNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTV 506 (573)
T ss_dssp HHHTSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEEEEEEC
T ss_pred HhhcccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCCCCCCcCCccccccccccchhhhhHhhCCCeEEEecccc
Confidence 11122223333333344444556779999987789999999842 57899999999999999964
Q ss_pred -----------------------------CCCCceeEEEEccCCChHHHHHHHHHHHHHcCCCCCCC
Q 010029 480 -----------------------------SEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPS 517 (520)
Q Consensus 480 -----------------------------~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~P~ 517 (520)
.+|+||||||||++|+|++||++|+.+|++++.++.|+
T Consensus 507 ~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~~~~~ 573 (573)
T 3ppm_A 507 TAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQPS 573 (573)
T ss_dssp CHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTSCC-
T ss_pred cccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcccCCC
Confidence 37999999999999999999999999999999887663
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=2.4e-96 Score=763.09 Aligned_cols=393 Identities=24% Similarity=0.290 Sum_probs=331.2
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHh-HHHHHHHHhHHHHHhcCCCCCCcccceeeeecccC
Q 010029 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIA 120 (520)
Q Consensus 42 ~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (520)
+|+.+|+++|++|++|++|++++||+||+++|+.+|||+++++| | + +..||||||||+|||||+
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~--------------~~~gpL~GvPi~vKD~~~ 66 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A--------------QASGPLRGIAVGIKDIID 66 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C--------------CSSSTTTTCEEEEETTBC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c--------------ccCCCcCCCEEEEEcccc
Confidence 58999999999999999999999999999999999999999988 5 1 235899999999999999
Q ss_pred ccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 010029 121 TKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSG 200 (520)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~pGGSSgG 200 (520)
++| ++||+||..|.++++.+||++|+|||+||||++||||||||++ .|+ |+|+||||++|+|||||||
T Consensus 67 v~G-~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~---------~n~--G~t~NP~~~~~~pGGSSgG 134 (414)
T 1o9p_A 67 TAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS---------RDP--TATLNPHNTGHSPGGASSG 134 (414)
T ss_dssp CSS-SCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS---------SCC--CSCCBTTBTTBCCCSSSHH
T ss_pred cCC-cccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc---------CCC--CCCCCCCCCCCCCCcchHH
Confidence 997 9999999999999999999999999999999999999999996 244 9999999999999999999
Q ss_pred HHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHHHHhCCCCCC
Q 010029 201 SAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 280 (520)
Q Consensus 201 saaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~~l~g~d~~d 280 (520)
||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|++ +
T Consensus 135 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~--~ 212 (414)
T 1o9p_A 135 SAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS--E 212 (414)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG--G
T ss_pred HHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975 1
Q ss_pred CccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCcc-hhhhccc
Q 010029 281 PATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNI-NSLNSIA 359 (520)
Q Consensus 281 ~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~-~~~~~~~ 359 (520)
+ . + ..+.+++||||+.++++. .++++++++++++++.|+++||+|++ +++|.. +...
T Consensus 213 ~----~----~---------~~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~~~~~--- 270 (414)
T 1o9p_A 213 F----S----G---------IVPAKAPRIGVVRQEFAG-AVEPAAEQGLQAAIKAAERAGASVQA-IDLPEAVHEAW--- 270 (414)
T ss_dssp G----S----S---------CCCCSSCEEEECCCGGGC-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCCCHHHHHHH---
T ss_pred c----c----c---------ccCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecCcchHHHHH---
Confidence 1 0 1 023578999999886654 68999999999999999999999998 677643 2221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHhhhcHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 010029 360 NDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRD 439 (520)
Q Consensus 360 ~~~~~~~~~e~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~ 439 (520)
..+..++..|....+..++... ...+++.+......+..++..++....+.|..+++
T Consensus 271 ~~~~~~~~~e~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~ 327 (414)
T 1o9p_A 271 RIHPIIQDFEAHRALAWEFSEH-----------------------HDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRR 327 (414)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHS-----------------------GGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-----------------------hhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2223455666666554443211 11233333333334444444433333444555567
Q ss_pred HHHHHHHhCCCCEEEecCCc---------------chHhhhhcCCCeeeeccCCCCCCCceeEEEEccCCChHHHHHHHH
Q 010029 440 GFEKLMSTNNLDALVTPRSY---------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAY 504 (520)
Q Consensus 440 ~~~~~~~~~~~D~Ll~Pt~~---------------~t~~~Nl~G~PaisVP~G~~~~GlPvGlQlvg~~~~D~~LL~~A~ 504 (520)
.+.++|+ ++|+||+|+++ +|.+||++|+|++|||+|++. |+|+||||+|++|+|++||++|+
T Consensus 328 ~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~lL~~a~ 404 (414)
T 1o9p_A 328 ELGEVFE--GVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGNDAHALATAW 404 (414)
T ss_dssp HHHHHTT--TCSEEEEESSSSSCCBGGGCCCCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCHHHHHHHHH
T ss_pred HHHHHHc--CCCEEEeCCCCCCCCcccccCCcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCChHHHHHHHH
Confidence 7999997 59999999975 467899999999999999987 99999999999999999999999
Q ss_pred HHHHHcC
Q 010029 505 GFEQATK 511 (520)
Q Consensus 505 ~lE~~~~ 511 (520)
+||++++
T Consensus 405 ~le~~~~ 411 (414)
T 1o9p_A 405 FLEDALA 411 (414)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999864
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=5.2e-97 Score=787.90 Aligned_cols=448 Identities=25% Similarity=0.332 Sum_probs=347.8
Q ss_pred cCHHHHHHHHHcCCCCH-HHHHHHHHHHHHHhCCCccEEE-ecCHh-HHHHHHHHhHH---------HHHhcCCCCCCcc
Q 010029 42 ATIKDLQLAFKQNKLTS-RQLVEFYLGEIHRLNPLLHGVI-EVNPD-ALSQADKADYE---------RKVKAAGSLRGLH 109 (520)
Q Consensus 42 ~s~~~l~~~~~~g~~t~-~e~~~~~l~ri~~~~~~lna~~-~~~~~-al~~A~~~d~~---------~~~~~g~~~gpL~ 109 (520)
+++.++...|++++++. +|+++.+++++++.++.+|+++ ++..+ + .++.+.|+. + .+|+..||||
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~--~~g~~~gpL~ 89 (521)
T 3a1k_A 13 AAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTS--IPPTSDGVLT 89 (521)
T ss_dssp HHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEE--ECCSSCCTTT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHh--hcCCCCCCCC
Confidence 46777888888999999 9999999999999987776776 66655 6 555555541 1 2477789999
Q ss_pred cceeeeecccCccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCC
Q 010029 110 GIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYV 189 (520)
Q Consensus 110 GvPi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~ 189 (520)
||||+|||||+++| ++||+||+.|+++++.+||++|+|||+||||++|||||+||++ +..++|++||+|+||||
T Consensus 90 GvPi~vKD~i~v~G-~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~-----~~~~~n~~~G~t~NP~~ 163 (521)
T 3a1k_A 90 GRRVAIKDNVTVAG-VPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCF-----SGSSFTPASGPVRNPWD 163 (521)
T ss_dssp TCEEEEETTBCCTT-SCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGC-----CSSSSCCTTCCCEETTE
T ss_pred CCEEEEEcCcccCC-cccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhh-----CCCCCCCCCCCcCCCCC
Confidence 99999999999997 9999999999999999999999999999999999999999998 77889999999999999
Q ss_pred CCCCCCCCChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHH
Q 010029 190 LSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYV 269 (520)
Q Consensus 190 ~~~~pGGSSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~ 269 (520)
++|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++
T Consensus 164 ~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~ 243 (521)
T 3a1k_A 164 RQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALM 243 (521)
T ss_dssp EEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHH
T ss_pred CCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccC
Q 010029 270 LDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEI 349 (520)
Q Consensus 270 ~~~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~ 349 (520)
+++|+|+|+.|+.+... .|..+|.+.+. .+++++||||+.+.+....++++|+++++++++.|+++||+|+| +++
T Consensus 244 l~vlag~d~~D~~~~~~---~~~~~~~~~l~-~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~~ 318 (521)
T 3a1k_A 244 LSVIAGRDGNDPRQADS---VEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEE-VNI 318 (521)
T ss_dssp HHHHCSCCSSCTTSCTT---CCCCCSSTTTT-SCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEE-ECC
T ss_pred HHHHhCCCCCCcccccc---CCCcchhhhhc-cCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC
Confidence 99999999988765221 12224655443 45789999999875543357999999999999999999999998 788
Q ss_pred CcchhhhccchhhHHHHHHHHHHHHHHHHHHhc-cC--CcccHHHHH-HhhccccchHHHhhhcHHHHHHhhh----cCC
Q 010029 350 GNINSLNSIANDETTAMLAEFKLAINAYLKELV-TS--PVRSLAEVI-AFNNKFSDLEKIKEYGQDLLLSAEA----TDG 421 (520)
Q Consensus 350 p~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~~-~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 421 (520)
|...... ..+..+...+...++.++..... .. ....+.+.. .+.. .+...+++.+...... ...
T Consensus 319 p~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~g~~~~~~ 390 (521)
T 3a1k_A 319 PWHLHAF---HIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRI-----QHADALSETVKLVALTGHHGITT 390 (521)
T ss_dssp THHHHHH---HHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHH-----HSGGGSCHHHHHHHHHHHHHHTT
T ss_pred CchHhHH---HHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhh-----hhhhhcCHHHHHHHHhchhhhcc
Confidence 7554321 11122222222222211100000 00 001111111 0100 0112233333221111 122
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCc-------------------------chHhhhhcCCCeeeec
Q 010029 422 IG-KTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSY-------------------------ASTLLAVGGFPGINVP 475 (520)
Q Consensus 422 ~~-~~~~~a~~~~r~~~~~~~~~~~~~~~~D~Ll~Pt~~-------------------------~t~~~Nl~G~PaisVP 475 (520)
+. .+|.++ ++.|+.+++.++++|++ +|+||+||++ +|.+||++|+|+||||
T Consensus 391 ~~~~~~~~a-~~~r~~~~~~~~~~~~~--~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP 467 (521)
T 3a1k_A 391 LGGASYGKA-RNLVPLARAAYDTALRQ--FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVP 467 (521)
T ss_dssp TTTHHHHHH-HHHHHHHHHHHHHHHHH--CSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEE
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHhcC--CCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEee
Confidence 33 344444 44555566779999985 9999999975 2568999999999999
Q ss_pred cCCCCCCCceeEEEEccCCChHHHHHHHHHHHH-HcCCCCC
Q 010029 476 AGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQ-ATKIRKP 515 (520)
Q Consensus 476 ~G~~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~-~~~~~~~ 515 (520)
+|+ .+|||+||||||++|+|++||++|++||+ ..+|+.|
T Consensus 468 ~g~-~~GlPvGlQlvg~~~~d~~LL~~A~~~E~~~~~~~~~ 507 (521)
T 3a1k_A 468 AGL-VNGLPVGMMITGRHFDDATVLRVGRAFEKLRGAFPTP 507 (521)
T ss_dssp EEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHHHHCCCCCT
T ss_pred ccc-CCCCCeeEEEEcCCCCHHHHHHHHHHHHHhhcccCCc
Confidence 999 69999999999999999999999999999 7777663
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=56.08 E-value=14 Score=25.99 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 010029 44 IKDLQLAFKQNKLTSRQLVEFYLGEIHR 71 (520)
Q Consensus 44 ~~~l~~~~~~g~~t~~e~~~~~l~ri~~ 71 (520)
+.++.+.+-.|++|..++++.+.+||.+
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4456677889999999999999999975
No 12
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=32.16 E-value=54 Score=30.49 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=37.5
Q ss_pred hhcCCCeeeeccCCCCCCCce-eEEEEccC--CChH-------HHHHHHHHHHHHcCCCCCC
Q 010029 465 AVGGFPGINVPAGYDSEGVPF-GICFGGLK--GTEP-------KLIEIAYGFEQATKIRKPP 516 (520)
Q Consensus 465 Nl~G~PaisVP~G~~~~GlPv-GlQlvg~~--~~D~-------~LL~~A~~lE~~~~~~~~P 516 (520)
...|.-+|++|+ ++.+|-++ +|.+.|+. .+++ .|.+.|..+++.++++.|+
T Consensus 192 ~~~g~~~iAaPI-~~~~g~~~aalsvs~p~~r~~~~~~~~~~~~l~~aA~~Is~~lg~~~~~ 252 (260)
T 3r4k_A 192 FEAEVHSHAVPI-FGPDRAVLGALAVAAPTSRMTPDQKRTIPPALRAAGLSLTERIGGACPP 252 (260)
T ss_dssp SSTTEEEEEEEE-ECTTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCCCT
T ss_pred cccCceEEEEEE-ECCCCCEEEEEEEEEehHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 355888999999 56678776 47777764 4553 5678889999999887654
No 13
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=29.92 E-value=60 Score=27.88 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=34.8
Q ss_pred hcCCCeeeeccCCCCCCCce-eEEEEccC--CChH-------HHHHHHHHHHHHcCCCC
Q 010029 466 VGGFPGINVPAGYDSEGVPF-GICFGGLK--GTEP-------KLIEIAYGFEQATKIRK 514 (520)
Q Consensus 466 l~G~PaisVP~G~~~~GlPv-GlQlvg~~--~~D~-------~LL~~A~~lE~~~~~~~ 514 (520)
..|.-+|++|+ ++.+|.++ .|.+.|+. .+++ .|.+.|..+++.++++.
T Consensus 118 ~~g~~~iAaPI-~~~~g~~~aalsv~~p~~r~~~~~~~~~~~~l~~aa~~is~~lg~~~ 175 (176)
T 3obf_A 118 SIEEVGVASPV-YDHRGNMVASVLIPAPKFRVSQDTLNSLGEACAAAAAKVTTRLGGRA 175 (176)
T ss_dssp STTEEEEEEEE-ECTTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCcEEEEEEE-ECCCCCEEEEEEeEeehhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45888999999 56678776 57777754 4544 46678888888887754
No 14
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=29.29 E-value=36 Score=23.12 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 010029 34 IHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRL 72 (520)
Q Consensus 34 ~~~~~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~ 72 (520)
....++..+++.||.+.++.+.++..-.-...++|+..+
T Consensus 5 ~s~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 5 SSGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50)
T ss_dssp SCCCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred cCcCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 456788899999999999999888755555666666654
No 15
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=27.74 E-value=29 Score=24.14 Aligned_cols=39 Identities=5% Similarity=0.150 Sum_probs=28.1
Q ss_pred CCcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 010029 34 IHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRL 72 (520)
Q Consensus 34 ~~~~~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~ 72 (520)
+...++..+++.||.+.++.+.++..-.-..+++||..+
T Consensus 5 ~~~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~ 43 (55)
T 2do1_A 5 SSGVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAY 43 (55)
T ss_dssp CCCCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred ccccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 456778899999999999988887743344455555443
Done!