RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010029
(520 letters)
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 449 bits (1157), Expect = e-154
Identities = 220/509 (43%), Positives = 290/509 (56%), Gaps = 41/509 (8%)
Query: 37 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
E LQ A + QL YL I R P L+ VIE+NPDA + A
Sbjct: 1 QTALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAAL 60
Query: 94 DYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKA 152
D ERK AG +RG LHGIP+LLKDNI D M TTAGS AL + RDA +V +LR A
Sbjct: 61 DAERK---AGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDA 117
Query: 153 GAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAV 212
GA+ILGKA+LSEW+NFRS+++ SG+S RGG +NPY L PCGSSSGS +VAA LAAV
Sbjct: 118 GAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAV 177
Query: 213 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 272
++GTETDGSI CP++ N +VGLKPT+GL SR G++PI+ QD+ GP+ RTVADAA VL A
Sbjct: 178 AIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTA 237
Query: 273 IAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHH 332
IAG D DPAT +A Y L L+G RLG+ RN E + F+
Sbjct: 238 IAGGDPADPATASAPAPAVD--YVAALDADALRGARLGVARNYLGYHPE---VDAQFERA 292
Query: 333 LHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYL-KELVTSPVRSLAE 391
L L+ GA+VID +++ + E +L EFK +NAYL +PVR+LA+
Sbjct: 293 LAELKAAGAVVIDVVDLDD----GDWGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLAD 348
Query: 392 VIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR----DGFEKLMST 447
+IAFN E + +GQ+L A+A G+ + A + L R +G + +
Sbjct: 349 LIAFNRAQHARE-MPYFGQELFEQAQAAPGL--DDPAYLDALADAKRLAGPEGIDAALKE 405
Query: 448 NNLDALVTPRS----------------YASTLLAVGGFPGINVPAGYDSEGVPFGICFGG 491
+ LDALV P + +ST AV G+P + VP G +G+P G+ F G
Sbjct: 406 HRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQ-VQGLPVGLSFIG 464
Query: 492 LKGTEPKLIEIAYGFEQATKIRKPPSFKS 520
+E +L+E+ Y +EQAT R+ P F
Sbjct: 465 AAWSEARLLELGYAYEQATHARREPRFVE 493
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 446 bits (1149), Expect = e-153
Identities = 203/491 (41%), Positives = 291/491 (59%), Gaps = 23/491 (4%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKADY 95
+E TI D+Q A + KLTS++LV +YL I + + P ++ ++E+NPDA+ A+ D+
Sbjct: 10 QKELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDH 69
Query: 96 ERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGA 154
ERK+K +RG LHGIP+LLKDNI T D M+T+AG+ AL + + DA +V KLR+AGA
Sbjct: 70 ERKIKG---VRGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGA 126
Query: 155 IILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPY---VLSADPCGSSSGSAISVAANLAA 211
+ILGKA+++E +NF S + +G+S RGGQ NPY GSS+GSAI+VAAN
Sbjct: 127 VILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTV 186
Query: 212 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 271
VS+GTETDGSIL P+ NSVVG+KPT+GL SR G+IP T QD+ GP RTV DAA +L
Sbjct: 187 VSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLG 246
Query: 272 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQ-VFD 330
++ G D D T SE I Y ++L +GL G ++G+ N + E + +F
Sbjct: 247 SLTGVDEKDVVT-HKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFK 305
Query: 331 HHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKEL-VTSPVRSL 389
+ LR EGA V++ ++I + + S +L E K +++ YL +L T PV S+
Sbjct: 306 ETIEVLRSEGATVVEDIDIPSFHREWSW-----GVLLYELKHSLDNYLSKLPSTIPVHSI 360
Query: 390 AEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTE---KAAILNLERFTRDGFEKLMS 446
+E++ FN + E+ +YGQ L + + A + ++ G + +
Sbjct: 361 SELMEFN--ENIAERALKYGQTKLERRKDFPNTLRNPEYLNARLEDIYFSQEQGIDFALE 418
Query: 447 TNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGF 506
NLDA++ P ST+ A G+P I +PAGY G PFGI +E LI++AY F
Sbjct: 419 KYNLDAILFPSYIGSTICAKAGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKLAYAF 478
Query: 507 EQATKIRKPPS 517
EQATK RK P
Sbjct: 479 EQATKHRKIPG 489
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 364 bits (935), Expect = e-120
Identities = 180/498 (36%), Positives = 279/498 (56%), Gaps = 19/498 (3%)
Query: 24 LLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI--HRLNPL-LHGVI 80
L I+ ++ I + AT+ +LQ KL+ +L YL I H N + L+ V
Sbjct: 53 LKGINIENVKIKEKEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVT 112
Query: 81 EVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVP 140
E+NP+A+ +A K D ER + L+GIP+++KDN+ T M T+AG+Y L +
Sbjct: 113 EINPNAMEEARKLDQER---SRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIAD 169
Query: 141 RDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPY-VLSADPCGSSS 199
+DA +V +L++ GA +LGKA++SEW+N+ S PSG+SG+ GQ NPY + D GSSS
Sbjct: 170 QDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSS 229
Query: 200 GSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPI 259
GSA VAA+ A +++GTET GSI+ P++ SVVGL+P+LG+ SR G+IP+ D+ GP+
Sbjct: 230 GSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPM 289
Query: 260 CRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNF 319
RTV DAA + +A+ G+D D + R Y + L GLKGK++G++ +
Sbjct: 290 ARTVKDAATLFNAMIGYDEKD-VMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSV---D 345
Query: 320 DEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLK 379
+ V + L+ GA++ D++++ + + N +T EFK +N Y
Sbjct: 346 QQDENRKAVAEKIRKDLQDAGAILTDYIQL----NNGGVDNLQTLEY--EFKHNVNDYFS 399
Query: 380 ELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRD 439
+ PV+SL E+IAFN K D ++ +YGQ L+ ++E + + + + +
Sbjct: 400 QQKNVPVKSLEEIIAFNKK--DSKRRIKYGQTLIEASEKSAITKDEFEKVVQTSQENAKK 457
Query: 440 GFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKL 499
++ + LDALV + L AV G+P + VPAGYD+ G P G F G + E +L
Sbjct: 458 ELDRYLVEKGLDALVMINNEEVLLSAVAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKEL 517
Query: 500 IEIAYGFEQATKIRKPPS 517
I Y +EQ +K RKPP
Sbjct: 518 FNIGYAYEQQSKNRKPPK 535
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 287 bits (736), Expect = 2e-91
Identities = 153/509 (30%), Positives = 224/509 (44%), Gaps = 70/509 (13%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA---LSQADKADY 95
+ E T +L + +L++ +LVE YL I LNP L+ + V+P+A L++A AD
Sbjct: 4 LTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADA 63
Query: 96 ERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGA 154
AAG G L G+PI +KDNI T + TTAGS AL V P DA VV +LR AGA
Sbjct: 64 RL---AAGEPLGPLAGVPIAVKDNIDTAG-LPTTAGSKALEDYVPPYDATVVERLRAAGA 119
Query: 155 IILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSL 214
+ILGK ++ E++ S + G +NP+ L P GSS GSA +VAA L ++L
Sbjct: 120 VILGKTNMDEFAMG-----SSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLAL 174
Query: 215 GTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIA 274
G++T GSI P++ +VGLKPT G SR GV+P+ D +GP+ RTV DAA +LD IA
Sbjct: 175 GSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIA 234
Query: 275 GFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLH 334
G D D P L LKG R+G+ + + F+ +
Sbjct: 235 GPDPRDSPLPPPPPVPPA------LAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVK 288
Query: 335 TLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIA 394
L GA V++ + A+ AY L
Sbjct: 289 ALEAAGAEVVEVSLPLLSDD-----------------YALAAYYLARFDGERYGLRAADL 331
Query: 395 FNNKFSDLEKIKEYGQDLLLSAE---ATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLD 451
+ + E + ++ + + A + R F+KL +D
Sbjct: 332 YGKTRA--EGFGPEVKRRIMLGTYLLSAGYYDAYYRRA---QKTLIRRAFDKLFE--EVD 384
Query: 452 ALVTP-----------------------RSYASTLLA-VGGFPGINVPAGYDSEGVPFGI 487
L+TP T+ A + G P I+VPAG+ ++G+P G+
Sbjct: 385 VLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGL 444
Query: 488 CFGGLKGTEPKLIEIAYGFEQATKIRKPP 516
G + L+ +A EQA + P
Sbjct: 445 QLIGPAFDDATLLRLAAALEQALGWHRRP 473
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 250 bits (641), Expect = 6e-78
Identities = 151/465 (32%), Positives = 206/465 (44%), Gaps = 60/465 (12%)
Query: 61 LVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNI 119
LVE YL NP L+ + V +AL+QA AD R A LHG+PI LKDNI
Sbjct: 2 LVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRR---ARKEKGPLHGVPISLKDNI 58
Query: 120 ATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSG 179
K + TTAGS AL P DA VV +LR AGA+ILGK ++ E++ + +
Sbjct: 59 DVKG-VPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMG-----STTENS 112
Query: 180 RGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLG 239
G +NP+ LS P GSS GSA +VAA L +++GT+T GSI P++ +VGLKPT G
Sbjct: 113 AFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYG 172
Query: 240 LTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFL 299
SR GV+P + D VGP+ RTV DAA +LD IAG+D DP S P + + L
Sbjct: 173 RVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADP----TSAPSPVPDFAEPL 228
Query: 300 RPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIA 359
+ LKG R+G+ R F F + + L G V++ SL
Sbjct: 229 KKS-LKGLRIGVPRE-DFYFSLDPEVQRAVRKAAAALEALGHEVVEV----EPPSLKHAL 282
Query: 360 NDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEAT 419
AE + + L EL L L + +L A +
Sbjct: 283 PLYYIIAPAEA-SSNLSDLDELYPRIRDEL------------LGDEVKRRIELGAYALSA 329
Query: 420 DGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTP-------------RSYAST---- 462
G A + R R F L LD L++P S
Sbjct: 330 GYSGAYYLKAQ-KVRRLLRREFAGLFEE--LDVLLSPTTPTPAPRLGEAADSPTVLYNLL 386
Query: 463 -------LLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLI 500
+ G P I++PAG+ +G+P G+ G G + L+
Sbjct: 387 DFTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 246 bits (628), Expect = 4e-74
Identities = 154/484 (31%), Positives = 262/484 (54%), Gaps = 39/484 (8%)
Query: 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNP---LLHGVIEVNPDALSQADKADYERK 98
A + LQ +L+ ++L YL I + + L+ + E+NP +++A++ D E
Sbjct: 165 ADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPTIIAEAEQLDKENT 224
Query: 99 VKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILG 158
+ L+G+P+LLKDNI TK+ + T+AG+ AL V+ +DA +V L+ GA+ILG
Sbjct: 225 TNKSA----LYGMPVLLKDNIGTKE-LPTSAGTVALKDWVIGKDATIVENLKANGALILG 279
Query: 159 KASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTET 218
K ++SEW+ P+G+SG+ GQ KNPY + DP GSSSGSA + ++ AA+++GTET
Sbjct: 280 KTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTET 339
Query: 219 DGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDH 278
+GSI+ P+S+ S VG KP+ GL + G+IP++ R D+ GP+ RTV DA +A+
Sbjct: 340 NGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTS 399
Query: 279 YDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQ 338
P + A LKGKR+G++ + E + V L++
Sbjct: 400 NPPLSTDA-----------------LKGKRIGLLAD-----GESNEETAVIKKIKLDLQK 437
Query: 339 EGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNK 398
GA +I+ + +G ++ D + + A+FK +N +L ++ SP+ +L +I FN
Sbjct: 438 AGATIIEGIAVGEFEQKDT---DYASLLNADFKHDLNQFL-QVNHSPMSTLESIIQFNQ- 492
Query: 399 FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRS 458
++ + +YGQ L+ ++ + + NL + +++ + ++ + LDA+VT
Sbjct: 493 -TNPTRNMKYGQSELVKSQQSTITKQQADNLASNLIQSSQNELDSVLQKDKLDAVVTIGM 551
Query: 459 YAST--LLAVGGFPGINVPAGYDSE-GVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKP 515
S L + G P + +PAGYD E P + F + ++ L+ + Y +EQ +K RK
Sbjct: 552 GGSVMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSDKILLNMGYAYEQQSKNRKS 611
Query: 516 PSFK 519
P+ K
Sbjct: 612 PNLK 615
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 214 bits (548), Expect = 7e-64
Identities = 118/299 (39%), Positives = 162/299 (54%), Gaps = 24/299 (8%)
Query: 52 KQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHG 110
K ++++ +L + YL I ++P L+ I V + AL+QA AD + AAG L G
Sbjct: 2 KNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKL---AAGEAGPLAG 58
Query: 111 IPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFR- 169
IPI +KDNI TK + TT S L V P DA VV KL+ AGA+ILGK ++ E F
Sbjct: 59 IPIAIKDNICTKG-IRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDE---FAM 114
Query: 170 -SSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSS 228
SS S F G KNP+ L P GSS GSA +VAA LA +LG++T GSI P++
Sbjct: 115 GSSTENSAF----GPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAF 170
Query: 229 NSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASE 288
VVGLKPT G SR G+I D +GP RTV DAA +L+AIAG D D + S
Sbjct: 171 CGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKD----STSA 226
Query: 289 YIPRGGYKQFLRPHGLKGKRLGIVRNPFFN--FDEGSPLAQVFDHHLHTLRQEGALVID 345
+P Y L +KG ++G+ + +F D + + + + L GA +++
Sbjct: 227 DVPVPDYTAALGK-DIKGLKIGVPKE-YFGEGLDPE--VKEAVEAAIKKLEDLGAEIVE 281
Score = 37.4 bits (88), Expect = 0.015
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 23/91 (25%)
Query: 438 RDGFEKLMSTNNLDALVTPRS-----------------YASTLLAV----GGFPGINVPA 476
+ FEK +D ++ P + Y S + V G P I+VPA
Sbjct: 371 KQDFEKAF--EKVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPA 428
Query: 477 GYDSEGVPFGICFGGLKGTEPKLIEIAYGFE 507
G+D G+P G+ G E L+ +AY FE
Sbjct: 429 GFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 206 bits (525), Expect = 1e-60
Identities = 150/491 (30%), Positives = 231/491 (47%), Gaps = 59/491 (12%)
Query: 47 LQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSL 105
L+ K+ +++ ++++E L I ++ +EV + AL QA K D
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTP----- 55
Query: 106 RGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEW 165
L GIPI +KDNI+TK + TT S L + P DA V+ +L++AGA+I+GK ++ E+
Sbjct: 56 --LAGIPIAVKDNISTKG-IVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEF 112
Query: 166 SNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCP 225
+ SS S F G KNP+ L P GSS GSA +VAA+LA SLG++T GSI P
Sbjct: 113 A-MGSSTETSAF----GPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQP 167
Query: 226 SSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRA 285
+S VVG KPT G SR G++ D +GP RTV D A +LD I+G D D +
Sbjct: 168 ASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAK 227
Query: 286 ASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVID 345
+ K+ LKG ++G+V+ D+ + + F++ L L + GA +++
Sbjct: 228 VPDPEFFEELKKD-----LKGLKVGVVKEFSEEMDKE--VQEKFENALEVLEELGAEIVE 280
Query: 346 HLEIGNINSLNS----IANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFN--NKF 399
+ ++ I+ E ++ LA + I + SL E+ A F
Sbjct: 281 -VSFPHVKYALPIYYIISPSEASSNLARYD-GIRYGYR---IEEPNSLKELYAKTRAEGF 335
Query: 400 SDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRS- 458
+ K + + LSA D KA + D F KL +D +V+P +
Sbjct: 336 GEEVKRRIMLGNYALSAGYYDKY--YLKA--QKVRTLIIDDFLKLFE--EVDVIVSPTAP 389
Query: 459 ----------------YASTLLAVG----GFPGINVPAGYDSEGVPFGICFGGLKGTEPK 498
Y S +L V G P I+VP G +G+P G+ G +
Sbjct: 390 TLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKT 449
Query: 499 LIEIAYGFEQA 509
L++++Y FEQA
Sbjct: 450 LLQVSYAFEQA 460
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 205 bits (523), Expect = 4e-60
Identities = 157/515 (30%), Positives = 236/515 (45%), Gaps = 86/515 (16%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYER 97
+ ++ + A + +L+ +LVE L L PL + V+ + AL+ A + D +R
Sbjct: 8 VASLSLTEAAAALRSGRLSCLELVEALLARAAALAPL-NAFTTVDAEGALAAARRIDAQR 66
Query: 98 KVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIIL 157
AAG+ L G+PI++KDNI T M TTAG+ ALL V DA VV +L AGA+ L
Sbjct: 67 ---AAGAALLLAGVPIVIKDNINTAG-MPTTAGTPALLGFVPATDAPVVQRLLDAGAVPL 122
Query: 158 GKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTE 217
GKA++ E + F + +G G +NPY + GSS G+A +VAA LA LGT+
Sbjct: 123 GKANMHELA-F----GITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTD 177
Query: 218 TDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFD 277
T GS+ P++ VVGL+PT+G S GV+PI+ +D+VGPI R+VAD A +LDA+
Sbjct: 178 TGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLA-LLDAVI--- 233
Query: 278 HYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFF-NFDEGSPLAQVFDHHLHTL 336
D A A P L G RLG+ PF+ D +A V + L L
Sbjct: 234 TGDAALPA---------------PVALAGLRLGVPAAPFWDGLDPD--VAAVAEAALAKL 276
Query: 337 RQEGALVIDHLEIGNINSLNS-----IANDETTAMLAEFKLAINAYLKE-LVTSPVRSLA 390
G ++ L++ ++ LN IA L E + AYL+E L
Sbjct: 277 AAAGVTFVE-LDLPGLHELNEAVGFPIA-------LYEALADLRAYLRENGAGVSFEELV 328
Query: 391 EVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFT-RDGFEKLMSTNN 449
IA S ++ +DLL I + A L++ R + + + + +
Sbjct: 329 ARIA-----SP--DVRAIFRDLLDP----PQISEDAYRAALDVGRPRLQAWYRQAFARHG 377
Query: 450 LDALVTPR------------------SYASTLLAV---------GGFPGINVPAGYDSEG 482
LDA++ P + T V G PG+++PAG G
Sbjct: 378 LDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGLSLPAGLTPHG 437
Query: 483 VPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPS 517
+P G+ G G++ +L+ I E+ P
Sbjct: 438 LPVGLELDGPAGSDRRLLAIGRALERVLGRLPAPD 472
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 148 bits (376), Expect = 2e-39
Identities = 106/335 (31%), Positives = 158/335 (47%), Gaps = 56/335 (16%)
Query: 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGV---IEVNPD-ALSQADKADYER 97
T+ L + TSR LVE L I P G V+ D A + AD AD R
Sbjct: 6 PTLAALAADLAAGRTTSRALVEAALARIAD--PAGEGARVFTHVDADAARAAADAADALR 63
Query: 98 KVKAAGSLRGLHGIPILLKD--NIATKDKMNTTAGSYALLRSVV-PRDAGVVVKLRKAGA 154
AA S L GIP+ +KD ++A T AGS L + DA V +LR+AGA
Sbjct: 64 AAGAAPSP--LAGIPVSVKDLFDVA---GQVTRAGSRVLADAPPAAADAPAVARLRRAGA 118
Query: 155 IILGKASLSEWSNFRSSKAPSGFSGRG-----GQGKNPYVLSAD----PCGSSSGSAISV 205
+++G+ +++E++ FSG G G +NP+ P GSSSG+A+SV
Sbjct: 119 VLIGRTNMTEFA----------FSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSV 168
Query: 206 AANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 265
A +AA +LGT+T GSI P++ + G KPT G +P++ DS+GP+ R+VA
Sbjct: 169 ADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVAC 228
Query: 266 AAYVLDAI-AGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSP 324
A ++DA+ AG + PA R L+G RL + + +
Sbjct: 229 CA-LVDAVLAGEEPVVPAARP------------------LEGLRLAVPTTVVLD-GLDAT 268
Query: 325 LAQVFDHHLHTLRQEGALV--IDHLEIGNINSLNS 357
+A F+ L L GA++ I E+ + +N+
Sbjct: 269 VAAAFERALKRLSAAGAIIEEIAFPELAELAEINA 303
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 130 bits (330), Expect = 5e-33
Identities = 97/279 (34%), Positives = 141/279 (50%), Gaps = 29/279 (10%)
Query: 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVK 100
+ ++ A + +L++R + + L I R NP L+ V + AL++A + D R
Sbjct: 7 LSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAAR--- 63
Query: 101 AAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVP--RDAGVVVKLRKAGAIIL 157
AAG G L G+P +K N+ + T AGS + R P RDA V +L AGA+++
Sbjct: 64 AAGEPLGPLAGVPFAVK-NLFDVAGLTTLAGS-KINRDRPPATRDATAVRRLEAAGAVLV 121
Query: 158 GKASLSEWSNFRSSKAPSGFSGRG---GQGKNPYVLSADPCGSSSGSAISVAANLAAVSL 214
G ++ E++ GF+ G +NP+ L+ GSS GSA +VAA L +L
Sbjct: 122 GALNMDEYA--------YGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTL 173
Query: 215 GTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIA 274
G++T+GSI P+S + GLKPT G SRAG P D +GP R+VAD A V D +
Sbjct: 174 GSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQ 233
Query: 275 GFDHYDP--ATRAASEYIPRGGYKQFLRPHGLKGKRLGI 311
G D DP A R A P L G +G R+ +
Sbjct: 234 GPDPQDPFQADRPAEPTAP-------LLDRGAEGLRIAV 265
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 128 bits (325), Expect = 2e-32
Identities = 100/315 (31%), Positives = 144/315 (45%), Gaps = 50/315 (15%)
Query: 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKA 101
+ L + + L Q+ E L I I + + + +A R +A
Sbjct: 6 KSAAQLAVLIQSGALDPVQVAEQALDAI-ASYADQAVFISLTEERAMREAEASSAR-WRA 63
Query: 102 AGSLRGLHGIPILLKD--NIATKDKMNTTAGSYALLRSVVP--RDAGVVVKLRKAGAIIL 157
SL L GIPI KD ++A TTAGS +L + P RDA VV L +AG + +
Sbjct: 64 GRSLGLLDGIPIAWKDLFDVA---GSVTTAGS-VVLANAAPASRDAAVVALLARAGMVSI 119
Query: 158 GKASLSEWSNFRSSKAPSGFSGRG-----GQGKNPYVLSAD----PCGSSSGSAISVAAN 208
G+ ++SE++ FSG G G NP S D P GSSSGSA++VAA
Sbjct: 120 GRTNMSEFA----------FSGLGLNPHYGTPVNP--RSTDVPRIPGGSSSGSAVAVAAG 167
Query: 209 LAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAY 268
L V++GT+T GS+ P++ N +VG K T G S GV P+ DS+GP+CR+V DA +
Sbjct: 168 LVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVW 227
Query: 269 VLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQV 328
+ A+ RG + L G RL + F+ E +
Sbjct: 228 IDAAM------------------RGLTAPDVVRRPLAGLRLVVPETVVFDDAE-PGVRAA 268
Query: 329 FDHHLHTLRQEGALV 343
F+ + L+ GALV
Sbjct: 269 FEAAVERLQAAGALV 283
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 128 bits (323), Expect = 3e-32
Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 20/247 (8%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKA 101
+I ++ A + ++++R + E L I++ + L+ V + AL+ A + D + A
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADL---A 57
Query: 102 AGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVP--RDAGVVVKLRKAGAIILG 158
AGS G L G+P +K N+ + T AG+ + R + P RDA +V +L AGA+++G
Sbjct: 58 AGSPLGPLAGVPFAVK-NLFDVAGLTTLAGA-KINRDLAPAKRDATLVQRLSAAGAVLVG 115
Query: 159 KASLSEWSNFRSSKAPSGFSGRG---GQGKNPYVLSADPCGSSSGSAISVAANLAAVSLG 215
++ E++ GF+ G +NP+ L+ GSS GSA +VAA L SLG
Sbjct: 116 ALNMDEFA--------YGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLG 167
Query: 216 TETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAG 275
++T+GSI P+S V GLKPT G SR GV P D VGP R+V D A D + G
Sbjct: 168 SDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQG 227
Query: 276 FDHYDPA 282
D DP
Sbjct: 228 PDPQDPF 234
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 127 bits (322), Expect = 6e-32
Identities = 88/254 (34%), Positives = 127/254 (50%), Gaps = 38/254 (14%)
Query: 46 DLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGS 104
+L A + +++R+ E L + +NP ++ V++ P+ AL+QAD D R A G
Sbjct: 12 ELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAAR---ARGD 68
Query: 105 LRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLS 163
G L G+P+ +K N+ TT G + P D+ VV LRKAGA+I+G+
Sbjct: 69 DPGPLAGVPVTVKVNVDQAGFA-TTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGR---- 123
Query: 164 EWSNFRSSKAPSGFSGRG-------GQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGT 216
+ P+ FS R G+ NP+ S P GSS G+A +VAA + A++ GT
Sbjct: 124 -------TNTPA-FSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGT 175
Query: 217 ETDGSILCPSSSNSVVGLKPTLG--------LTSRAGVIPITPRQDSV-GPICRTVADAA 267
+ GSI P+ + V GL+PTLG R PI + SV GP+ RTVAD
Sbjct: 176 DIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPER----PIGAQLMSVQGPLARTVADLR 231
Query: 268 YVLDAIAGFDHYDP 281
L A+A D DP
Sbjct: 232 LALAAMAAPDPRDP 245
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 127 bits (321), Expect = 2e-31
Identities = 85/268 (31%), Positives = 116/268 (43%), Gaps = 32/268 (11%)
Query: 87 LSQADKADYERKVKAAGSLRG------LHGIPILLKDNIATKDKMNTTAG--SYALLRSV 138
+S + D + A + L+G+P +KDNI + TTA ++A
Sbjct: 5 ISLLSEEDLLAQAAALDARDARPERLPLYGVPFAVKDNIDVAG-LPTTAACPAFAYTPE- 62
Query: 139 VPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSG-RGGQGKNPYVLSAD--PC 195
DA VV LR AGAI++GK +L +++ +G G R G
Sbjct: 63 --EDATVVALLRAAGAIVVGKTNLDQFA--------TGLVGTRSPYGAVRNAFDPAYISG 112
Query: 196 GSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 255
GSSSGSA++VA L +LGT+T GS P++ N++VGLKPT GL S GV+P D
Sbjct: 113 GSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDC 172
Query: 256 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNP 315
V TVADA VL A D DP +R + P R+G+ R
Sbjct: 173 VSIFALTVADAEQVLRIAAAPDARDPYSRPLP---AAALRRFPPPP------RVGVPRAA 223
Query: 316 FFNFDEGSPLAQVFDHHLHTLRQEGALV 343
F S F + L G V
Sbjct: 224 QLEFFGDSQAEAAFAAAVERLEALGVEV 251
Score = 31.9 bits (73), Expect = 0.87
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 471 GINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS 520
+ VPAG+ S+G+PFG+ G + L + + A+ + + +S
Sbjct: 372 AVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAASALPLGATGES 421
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 125 bits (316), Expect = 5e-31
Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 48/292 (16%)
Query: 38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNP--DALSQADKADY 95
PI + L A ++ +++ +++ YL I R+NP ++ ++ + L++A + D
Sbjct: 8 PIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDA 67
Query: 96 ERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVP-RDAGVVVKLRKAG 153
A G RG LHG+P KD TK + TT GS + VP DA VV ++R AG
Sbjct: 68 AL---ARGEYRGWLHGMPQAPKDLAPTKG-IRTTLGS-PIFADQVPQEDAIVVERMRAAG 122
Query: 154 AIILGKASLSEWSNFRSSKAPSGFSGRGGQG--------KNPYVLSADPCGSSSGSAISV 205
AI +GK + E+ G G +NPY S GSS G+A ++
Sbjct: 123 AIFIGKTNTPEF-------------GLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAAL 169
Query: 206 AANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQD-------SVGP 258
A + V+ G++ GS+ P++ N+V G +P+ G +P P D + GP
Sbjct: 170 ALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGR------VPHGPGGDVFVQQLGTEGP 223
Query: 259 ICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLG 310
+ RTV D A +L AG+D DP + A P + L+GKR+
Sbjct: 224 MGRTVEDVALLLAVQAGYDPRDPLSLAED---PARFAQPLEAD--LRGKRIA 270
Score = 40.0 bits (94), Expect = 0.003
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 467 GGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKI--RKPP 516
G P I+VP G+++ G+P G+ G + ++++A+ +EQAT R+PP
Sbjct: 428 AGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHAYEQATDWVQRRPP 479
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 126 bits (319), Expect = 6e-31
Identities = 108/313 (34%), Positives = 150/313 (47%), Gaps = 42/313 (13%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGV-IEVNPDALSQADKADYERKVKA 101
T+ L+ A++ LT R +V I ++ V I + P+A A A E + A
Sbjct: 8 TLASLRAAYRAGTLTPRAVVAALYARIAAVDD--PEVWIHLRPEADLLAQAAALEARDPA 65
Query: 102 AGSLRGLHGIPILLKDNIATKD--KMNTTAG--SYALLRSVVPRDAGVVVKLRKAGAIIL 157
A L +G+P +KDNI D + TTA ++A RDA VV +LR AGAI++
Sbjct: 66 ALPL---YGVPFAVKDNI---DVAGLPTTAACPAFA---YTPERDATVVARLRAAGAIVI 116
Query: 158 GKASLSEWSNFRSSKAPSGFSG-RGGQGKNPYVLSAD--PCGSSSGSAISVAANLAAVSL 214
GK +L +++ +G G R G + GSSSGSA++VA L + +L
Sbjct: 117 GKTNLDQFA--------TGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFAL 168
Query: 215 GTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIA 274
GT+T GS P++ N++VGLKPTLGL S GV+P D V TV DA VL +A
Sbjct: 169 GTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMA 228
Query: 275 GFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRN---PFFNFDEGSPLAQVFDH 331
GFD DP +RA P P G R+G+ R FF D + F
Sbjct: 229 GFDPADPYSRANPADAPAA------LPAGP---RVGVPRAAQLEFFG-DAEA--EAAFAA 276
Query: 332 HLHTLRQEGALVI 344
L L GA ++
Sbjct: 277 ALARLEALGAELV 289
Score = 29.0 bits (66), Expect = 7.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 471 GINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQAT 510
+ VPAG+ ++G+PFG+ + L ++A + A
Sbjct: 409 ALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL 448
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 125 bits (315), Expect = 1e-30
Identities = 102/310 (32%), Positives = 144/310 (46%), Gaps = 41/310 (13%)
Query: 37 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN-----PLLHGVIEVNPDALSQAD 91
+ E +I +L+ A + + T+ +LV+ YL I + L+ V+ NPDAL +A+
Sbjct: 2 IEVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPDALKEAE 61
Query: 92 KADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLR 150
+D R A G G L GIP KD+ K + +GS A V RDA + +LR
Sbjct: 62 ASDARR---ARGETLGPLDGIPYTAKDSYLVKG-LTAASGSPAFKDLVAQRDAFTIERLR 117
Query: 151 KAGAIILGKASLSEWSNFRSSKAPSGFSGRG--GQGKNPY----VLSADPCGSSSGSAIS 204
AGAI LGK ++ +N G RG G+ ++PY + + GSS+G+ +
Sbjct: 118 AAGAICLGKTNMPPMAN--------GGMQRGVYGRAESPYNAAYLTAPFASGSSNGAGTA 169
Query: 205 VAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVA 264
AA+ +A L ET S P+S+N + P+ G+ S G P+TP D V P RT+A
Sbjct: 170 TAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMA 229
Query: 265 DAAYVLDAIAGFDHYDPATR-------------AASEYIPRGGYKQFLRPHGLKGKRLGI 311
D VLD I DP TR ASE P LKGKR G+
Sbjct: 230 DLLEVLDVIVA---DDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGV 286
Query: 312 VRNPFFNFDE 321
R + N D
Sbjct: 287 PRM-YINADP 295
Score = 30.1 bits (68), Expect = 3.3
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 468 GFPGINVPAGYDSE-GVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPP 516
G P + VP G ++ G+P G+ F G + L+ A FE R P
Sbjct: 511 GVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGSRRMVP 560
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 123 bits (312), Expect = 2e-30
Identities = 82/264 (31%), Positives = 125/264 (47%), Gaps = 29/264 (10%)
Query: 31 SNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQ 89
+A A +L A +++S +L + + I R + ++ ++ + D A +
Sbjct: 1 MSAKAADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAA 60
Query: 90 ADKADYERKVKAAGSLRGLHGIPILLKD--NIATKDKMNTTAGSYALLRSVVPRDAGVVV 147
A AD R A G L GIP+ +K+ N+A + TT G L V DA V
Sbjct: 61 ARAADAAR---ARGERGPLLGIPVTVKESFNVA---GLPTTWGFPDLRDYVPAEDAVAVA 114
Query: 148 KLRKAGAIILGKAS----LSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAI 203
+L+ AGA+ILGK + L +W ++ G NP+ L+ P GSS GSA
Sbjct: 115 RLKAAGAVILGKTNVPLGLQDWQSYNEIY---------GTTNNPWDLARTPGGSSGGSAA 165
Query: 204 SVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG-VIPITP----RQD--SV 256
++AA A+S+G++ GS+ P+ V KPTLGL G + P P + D
Sbjct: 166 ALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVA 225
Query: 257 GPICRTVADAAYVLDAIAGFDHYD 280
GP+ R+ D A +LD +AG D D
Sbjct: 226 GPMARSARDLALLLDVMAGPDPLD 249
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 123 bits (311), Expect = 3e-30
Identities = 79/215 (36%), Positives = 101/215 (46%), Gaps = 22/215 (10%)
Query: 108 LHGIPILLKDNIATKD--KMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEW 165
L G + LKDN+A MN GS L V DA VV +L AGA I+GKA+ +
Sbjct: 88 LAGKTVALKDNVAVAGVPMMN---GSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDL 144
Query: 166 ----SNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGS 221
+ S P NP GSSSGSA VAA +++G + GS
Sbjct: 145 CFSGGSHTSDPGPV---------HNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGS 195
Query: 222 ILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDP 281
I PS+ + G+KPT GL G PI D +GP+ TV D A +L+ IAG D DP
Sbjct: 196 IRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDP 255
Query: 282 ATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 316
A P Y L G+KG ++GI+R F
Sbjct: 256 RQPAQ---PPVDDYTAALD-RGVKGLKIGILREGF 286
Score = 33.4 bits (77), Expect = 0.33
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 466 VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATK 511
V G P ++VP G +G+P G+ G E ++ A FE +
Sbjct: 458 VTGHPAMSVPCGL-VDGLPVGLMLVGRHFDEATILRAAAAFEASGD 502
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 121 bits (305), Expect = 5e-30
Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 50/317 (15%)
Query: 86 ALSQADKADYERKVKAAGSLRGLHGIPILLKD--NIATKDKMNTTAGSYALLRSVVP--R 141
A ++AD AD R+ SL L G + +KD ++A + T AGS + R P
Sbjct: 26 ARAEADAADARRRAGR--SLGPLDGRIVSIKDLFDVAGEP---TLAGS-VIRRDAPPAGA 79
Query: 142 DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRG-----GQGKNPYVLSADPCG 196
DA +V +LR AGA+I+GK ++E++ F+ G G+ N + P G
Sbjct: 80 DALIVQRLRNAGAVIIGKTHMTEFA----------FTPVGLNPHYGEPGNAIDPARIPGG 129
Query: 197 SSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSV 256
SSSG+A+SVA + +++G++T GS+ P++ N +VG KPT G P++P DS+
Sbjct: 130 SSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSI 189
Query: 257 GPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 316
GP+ RTVAD A DA+ A + IP L + G R+G+ +
Sbjct: 190 GPLARTVADCA-AADAVM----------AGEKPIP-------LEVLPVAGLRIGLPKGYL 231
Query: 317 FNFDEGSPLAQVFDHHLHTLRQEGA----LVIDHL--EIGNINSLNSIANDETTAMLAEF 370
E +A F+ L L + GA L ID L + + SIA E + + A++
Sbjct: 232 LADMEP-DVAAAFEASLAALEKAGARIADLAIDDLIARLAEATRIGSIAGIEASHIHADW 290
Query: 371 KLAINAYLKELVTSPVR 387
++A + V P+
Sbjct: 291 LADLDANVDIRVKRPLS 307
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 115 bits (291), Expect = 9e-28
Identities = 86/269 (31%), Positives = 127/269 (47%), Gaps = 30/269 (11%)
Query: 36 AFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKAD 94
+ R + D +TS +LV L I P L+ V + AL++A +AD
Sbjct: 12 SGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEAD 71
Query: 95 YERKVKAAGSLRGLHGIPILLKDN--IATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKA 152
R AAG L G+PI +KD+ +A TAG D+ VV +LR A
Sbjct: 72 RRR---AAGDRLPLLGVPIAVKDDVDVAGVPTAFGTAGEVP----PATADSEVVRRLRAA 124
Query: 153 GAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAV 212
GA+I+GK + E + + P F G +NP+ P GSS GSA +VAA L
Sbjct: 125 GAVIVGKTNTCELGQWPFTSGP-AF----GHTRNPWSRDHTPGGSSGGSAAAVAAGLVTA 179
Query: 213 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSV------GPICRTVADA 266
++G++ GS+ P++ +VG+KP + G I P ++ GP+ RTVADA
Sbjct: 180 AIGSDGAGSVRIPAAWTHLVGIKP------QRGRISTWPLPEAFNGLTVNGPLARTVADA 233
Query: 267 AYVLDAIAG---FDHYDPATRAASEYIPR 292
A +LDA +G D + P S+ + R
Sbjct: 234 ALLLDAASGNHPGDRHRPPPVTVSDAVGR 262
Score = 41.6 bits (98), Expect = 8e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 466 VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIA 503
V G+P INVPAG+ S+G+P G G +EP LI +A
Sbjct: 424 VLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLA 461
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 114 bits (288), Expect = 2e-27
Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 25/306 (8%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAA 102
+ +L ++ L+ ++ E L I R P L+ + +P+A A +A R K
Sbjct: 8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGE 67
Query: 103 GSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASL 162
L L G+P+ +K+NIAT+ + G+ A DA +LR+AGA+IL K ++
Sbjct: 68 -PLGPLDGVPVTIKENIATRG-VPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTM 125
Query: 163 SEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSI 222
++ S G S G +NP+ L +P GSS+G+ + AA + LGT+ GS+
Sbjct: 126 PDYGMLSS-----GLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSV 180
Query: 223 LCPSSSNSVVGLKPTLGLTSRAGVIPITP----RQDSVGPICRTVADAAYVLDAIAGFDH 278
P+ +VGLKP+LG IPI P R GP+ RTV DAA ++ ++ D
Sbjct: 181 RLPAGWCGIVGLKPSLGR------IPIDPPYTGR--CAGPMTRTVDDAALLMSVLSRPDA 232
Query: 279 YDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQ 338
D + + + ++G R+G++ + + +
Sbjct: 233 RDGTSLPPQDI----DWSDLDID--VRGLRIGLMLDAGCGLAVDPEVRAAVEAAARRFEA 286
Query: 339 EGALVI 344
GA+V
Sbjct: 287 AGAIVE 292
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 113 bits (285), Expect = 3e-27
Identities = 82/225 (36%), Positives = 111/225 (49%), Gaps = 23/225 (10%)
Query: 56 LTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPIL 114
LT+ L+E YL I RL+ L V D A ++A+ A + AG L G+PI
Sbjct: 23 LTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQ---QRLDAGERLPLLGVPIA 79
Query: 115 LKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAP 174
+KD++ ++ TT GS DA VV +LR AGA+I+GK ++ E P
Sbjct: 80 IKDDVDVAGEV-TTYGSAGHGP-AATSDAEVVRRLRAAGAVIIGKTNVPELMIM-----P 132
Query: 175 SGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGL 234
S G +NP+ + P GSS GSA +VAA LA V+LG++ GSI PS+ + GL
Sbjct: 133 FTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGL 192
Query: 235 KPTLGLTSRAGVIPITPRQD------SVGPICRTVADAAYVLDAI 273
KP S P GPI R+V DAA +LDA
Sbjct: 193 KPQRDRISLE------PHDGAWQGLSVNGPIARSVMDAALLLDAT 231
Score = 31.8 bits (72), Expect = 0.95
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 453 LVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATK- 511
LV R + + G P VP +D +G+P + G E L+ +A E A
Sbjct: 395 LVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESARPW 454
Query: 512 -IRKPP 516
R+PP
Sbjct: 455 AHRRPP 460
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 113 bits (284), Expect = 6e-27
Identities = 94/319 (29%), Positives = 142/319 (44%), Gaps = 57/319 (17%)
Query: 56 LTSRQLVEFY--------------LGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVK 100
LT+ +L+ Y L I R +P ++ V+ + AL+ A +A ER +
Sbjct: 7 LTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAA-RASEERWRR 65
Query: 101 AAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPR-----DAGVVVKLRKAGA 154
G G L G+P+ +KD T+ T GS R++ DA V +LR+AGA
Sbjct: 66 --GEPCGLLDGVPVSIKDIFLTRG-WPTLRGS----RAIDADGPWDVDAPAVARLREAGA 118
Query: 155 IILGKASLSE--WSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAV 212
++LGK + E W K + S G +NP+ GSS G+A +VA + +
Sbjct: 119 VLLGKTTTPEFGW------KGVTD-SPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPL 171
Query: 213 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS-----VGPICRTVADAA 267
S+GT+ GS+ P+S G KPT G +P+ P VGP+ RTVADAA
Sbjct: 172 SVGTDGGGSVRIPASFCGTFGFKPTFGR------VPLYPASPFGTLAHVGPMTRTVADAA 225
Query: 268 YVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSP-LA 326
+LD IA D D + P + L ++G L I +P + + P +A
Sbjct: 226 LLLDVIARPDARDWSALPP----PTTSFLDALD-RDVRG--LRIAYSPTLGYVDVDPEVA 278
Query: 327 QVFDHHLHTLRQEGALVID 345
+ + L GA V +
Sbjct: 279 ALVAQAVQRLAALGARVEE 297
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 85.0 bits (211), Expect = 1e-17
Identities = 59/227 (25%), Positives = 90/227 (39%), Gaps = 32/227 (14%)
Query: 56 LTSRQLVEFYLGEIHRLNPLLHGVI-EVNPDALSQADKADYERKVKAAGSLRG-LHGIPI 113
+++ ++VE + +NP L+ + A +A GS G G+P
Sbjct: 29 VSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRA---------ARPGSQGGFFSGVPT 79
Query: 114 LLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKA 173
+KDN+ + T GS A D+ + G I LGK L E+
Sbjct: 80 FIKDNVDVAG-LPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEF-------- 130
Query: 174 PSGFSG-----RGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSS 228
GFS R G +NP+ SS GSA VAA + ++ + GSI P++
Sbjct: 131 --GFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAAC 188
Query: 229 NSVVGLKPTLG--LTSRAG-VIPITPRQDSVGPICRTVADAAYVLDA 272
+VGLKP+ G +P+ + G + RTV D A
Sbjct: 189 CGLVGLKPSRGRLPLDPELRRLPV--NIVANGVLTRTVRDTAAFYRE 233
Score = 43.0 bits (102), Expect = 3e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 466 VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
G P I++P G S+G+P G+ F G E L+E+AY E+A
Sbjct: 418 ATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA 461
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 76.5 bits (188), Expect = 7e-15
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 108 LHGIPILLKDNIATKDKMNTTAGS--YALLRSVVPRDAGVVVKLRKAGAIILGKASLSEW 165
LHG+ +KD I + T G+ +A S A V+ + + GA +GK + E
Sbjct: 27 LHGLTFAVKD-IFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEM 85
Query: 166 SNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCP 225
+ + +G + G NP P GSSSGSA++V A L SLGT+T GS+ P
Sbjct: 86 A-----YSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVP 140
Query: 226 SSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRA 285
+S + G +P+ G S GVIP+ D+VG R V + +P +
Sbjct: 141 ASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNP-IKP 199
Query: 286 ASEYIPRGGYKQFLRPHGLKGKRL 309
+ I ++ PH + L
Sbjct: 200 SQIIIAEDCFQLSSIPHDRLVQVL 223
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 75.4 bits (186), Expect = 1e-14
Identities = 69/197 (35%), Positives = 88/197 (44%), Gaps = 32/197 (16%)
Query: 101 AAGSLRGLHGIPILLKDNIATKDKMN-----TTAGSYALLRS--VVPRDAGVVVKLRKAG 153
A+G L GL A KD + T G+ L V R A V KL AG
Sbjct: 22 ASGPLAGL---------RFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAG 72
Query: 154 AIILGKASLSEWSNFRSSKAPSGFSGRG-----GQGKNPYVLSADPCGSSSGSAISVAAN 208
A +GK E + FS G G NP P GSSSGSA +VA
Sbjct: 73 ARFVGKTQTDELA----------FSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGG 122
Query: 209 LAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAY 268
LA +LGT+T GS+ P+S + GL+PT G S GV+P+ P D+VG R +A
Sbjct: 123 LADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLER 182
Query: 269 VLDAIAGFD-HYDPATR 284
V + + G D P T+
Sbjct: 183 VGEVLLGDDAQEFPLTQ 199
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 74.5 bits (183), Expect = 3e-14
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 24/205 (11%)
Query: 50 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVI-EVNPDALSQADKADYERKVKAAGSLRGL 108
A +Q ++T +LV + + +LNP L+ ++ E +AL +A + D+ K A
Sbjct: 12 AVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFA------- 64
Query: 109 HGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEW--S 166
G+PI LKD +T+GS + V +L G IILG+++ E+
Sbjct: 65 -GVPIFLKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFK 123
Query: 167 NFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPS 226
N S G P+ S + GSS G+A V++ + A++ ++ GSI P+
Sbjct: 124 NISDSSL-------HGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPA 176
Query: 227 SSNSVVGLKPTLGLTSRAGVIPITP 251
S N ++GLKP SR G IP+ P
Sbjct: 177 SFNGLIGLKP-----SR-GRIPVGP 195
Score = 34.0 bits (78), Expect = 0.17
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 468 GFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
G P I++P EG+P G+ KG E L+ IA FE A
Sbjct: 436 GQPAISLPTYETKEGLPMGVQLIAAKGREDLLLGIAEQFEAA 477
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 72.0 bits (177), Expect = 2e-13
Identities = 56/175 (32%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 115 LKDNIATKDKMNTTAGSYALLRSVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKA 173
+KDN AT + T S L + P +A VV KL AGA + K E
Sbjct: 44 IKDNFATSEG--PTHASSKSLENFKPSYNATVVQKLINAGAKPVAKVHCDEL-------- 93
Query: 174 PSGFSGRGGQG--------KNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCP 225
G GG G KNP S GSSSGSA + N++ ++G++T S+ P
Sbjct: 94 -----GLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKNIS-FAIGSDTGDSVRLP 147
Query: 226 SSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 280
+S VG KP+ G SR G+ D+V V DA + + G D D
Sbjct: 148 ASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDEND 202
>gnl|CDD|235024 PRK02287, PRK02287, hypothetical protein; Provisional.
Length = 171
Score = 30.2 bits (69), Expect = 1.3
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 55 KLTSRQLVEFYLGEIHR-LNPLLHGVIEVNP---DALSQADKADYERK 98
K T+R+LV F L + R + + G I +NP ALS AD+ E++
Sbjct: 16 KCTARKLVRFGLARLVRSIRKIPRGSIVLNPFAEKALSPADRDIVEKR 63
>gnl|CDD|223924 COG0855, Ppk, Polyphosphate kinase [Inorganic ion transport and
metabolism].
Length = 696
Score = 31.1 bits (71), Expect = 1.6
Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 33/157 (21%)
Query: 17 SHLLLPTL--LAISAQSNAIHAFPIREATIKDLQLA----FKQNKLTSRQLVEFYLGEIH 70
S+ LL L LAI + SN F +R A +K A + LT R+ + +
Sbjct: 33 SNPLLERLRFLAIFS-SNLDEFFMVRVAGLKRQIEAGIEQRSPDGLTPREQLGRIQERVL 91
Query: 71 RLN------------PLL--HGVIEVNPDALSQADKA-------DYERKVKAAGSLRGLH 109
+L PLL G+ VN LS+A K + V +L H
Sbjct: 92 KLVQEQDRLFNELLLPLLAKEGIFIVNYRELSEAQKKWLRTYFKEQIFPVLTPLALDPAH 151
Query: 110 GIPILLKD--NIATK-DKMNTTAGSYALLR--SVVPR 141
P L N+A + + YAL++ SV+PR
Sbjct: 152 PFPFLSNLSLNLAVEIRGKDAFGEHYALVKIPSVLPR 188
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 459
Score = 31.0 bits (71), Expect = 1.6
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 281 PATRAASEYIPRGGYKQFLRPHGLKGKRLGI 311
P T AA YI R Y F LKG R+G+
Sbjct: 142 PDTDAADAYIAR--YTDFFGAGALKGLRIGV 170
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 30.7 bits (70), Expect = 2.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 42 ATIKDLQLAF---KQNKLTSRQLVEFYLGEIHRLN 73
+ +KDL+ ++N+L R+ + F L EIHR N
Sbjct: 84 SGVKDLREIIEEARKNRLLGRRTILF-LDEIHRFN 117
>gnl|CDD|225410 COG2854, Ttg2D, ABC-type transport system involved in resistance
to organic solvents, auxiliary component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 202
Score = 30.0 bits (68), Expect = 2.3
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 4 LKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVE 63
+A ++AF+ P Q A + +K+ Q KQ+ RQ+V+
Sbjct: 8 TILALLVIAFASSLAAAAPANPYSLVQEAADKVL----SILKNNQAKIKQDPQYLRQIVD 63
Query: 64 FYLGEI 69
L
Sbjct: 64 QELLPY 69
>gnl|CDD|233896 TIGR02495, NrdG2, anaerobic ribonucleoside-triphosphate reductase
activating protein. This enzyme is a member of the
radical-SAM family (pfam04055). It is often gene
clustered with the class III (anaerobic) ribonucleotide
triphosphate reductase (NrdD, TIGR02487) and presumably
fulfills the identical function as NrdG which utilizes
S-adenosyl methionine, an iron-sulfur cluster and a
reductant (dihydroflavodoxin) to produce a
glycine-centered radical in NrdD [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism, Protein fate, Protein modification and
repair].
Length = 192
Score = 29.6 bits (67), Expect = 2.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 62 VEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLH 109
VE L + R LL GV+ + QA D+ R+V+ G L
Sbjct: 49 VEELLEFLRRRRGLLDGVVITGGEPTLQAGLPDFLREVRELGFEVKLD 96
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 30.2 bits (68), Expect = 2.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 132 YALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPS 175
YA L + P + V L+ AG+ L A LS W++F ++ APS
Sbjct: 63 YAELSTAYPENGADYVYLKNAGSRPL--AFLSGWASFWANDAPS 104
>gnl|CDD|219865 pfam08493, AflR, Aflatoxin regulatory protein. This domain is
found in the aflatoxin regulatory protein (AflR) which
is involved in the regulation of the biosynthesis of
aflatoxin in the fungal genus Aspergillus. It occurs
together with the fungal Zn(2)-Cys(6) binuclear cluster
domain (pfam00172).
Length = 275
Score = 29.5 bits (66), Expect = 3.5
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 166 SNFRSSKAPSGFSGRGGQGKN-PYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILC 224
+N SS P G P P G+SS S + A E GSIL
Sbjct: 19 ANTTSSSHPQPPVQSGPSSIQPPVATPHTPNGTSSPSPKFSHQSPPAE---PELWGSILS 75
Query: 225 PSSSNSVVG 233
P++SN G
Sbjct: 76 PNASNQDQG 84
>gnl|CDD|233458 TIGR01540, portal_PBSX, phage portal protein, PBSX family. This
model represents one of several distantly related
families of phage portal protein. This protein forms a
hole, or portal, that enables DNA passage during
packaging and ejection. It also forms the junction
between the phage head (capsid) and the tail proteins.
It functions as a dodecamer of a single polypeptide of
average mol. wt. of 40-90 KDa. This family shows clear
homology to TIGR01537. The alignment for this group was
trimmed of poorly alignable N-terminal sequence of about
50 residues and of C-terminal regions present in some
but not all members of up 180 residues [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 320
Score = 29.1 bits (65), Expect = 5.0
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKAD--Y 95
P+ E KD + F + K SR L HRL PL G+ N A+KA Y
Sbjct: 241 PLAETLQKDAE--FLEYKNKSRN----DLRAAHRLPPLYTGITPANEGGRGDAEKARRVY 294
Query: 96 ERKV 99
E +V
Sbjct: 295 EEQV 298
>gnl|CDD|172308 PRK13770, PRK13770, histidinol dehydrogenase; Provisional.
Length = 416
Score = 29.4 bits (66), Expect = 5.1
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 84 PDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDA 143
AL +R + S+ H + I + MNT A +A +++V P+
Sbjct: 273 AKALPNV-----DRYDIVSKSIANQHYL-IHASNFDEACHVMNTIAPEHASIQTVNPQP- 325
Query: 144 GVVVKLRKAGAIILGKAS 161
+ K++ GA+ +G S
Sbjct: 326 -YIEKVKYVGALFIGHYS 342
>gnl|CDD|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 791
Score = 29.2 bits (66), Expect = 6.2
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 18/97 (18%)
Query: 195 CGSSSGSA--ISVAANLAAVSLGTETDGSILC-PSSSNSVVGLKPTLGLTSRAGVIPITP 251
G+S+GS I AAN+A G D I +NS +GL G
Sbjct: 444 SGTSAGSPAIIEAAANVAKALKGRGADVGITLVAPEANS-------MGLALLGG----GS 492
Query: 252 RQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASE 288
++++ + ADA VL+ D Y A A +
Sbjct: 493 LEEALEELESGRADAVIVLEN----DLYRHAPAARVD 525
>gnl|CDD|147207 pfam04924, Pox_A6, Poxvirus A6 protein.
Length = 371
Score = 28.4 bits (64), Expect = 8.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 389 LAEVIA-FNNKF-SDLEKIKEYGQDLLLSAE-ATDGIG 423
L ++IA F++ +D EK++EY + +S E GI
Sbjct: 180 LLKIIAVFDSDLVTDKEKLEEYREIFSISTESVIHGIR 217
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,637,960
Number of extensions: 2675959
Number of successful extensions: 2353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2252
Number of HSP's successfully gapped: 73
Length of query: 520
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 419
Effective length of database: 6,457,848
Effective search space: 2705838312
Effective search space used: 2705838312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.6 bits)