RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010029
(520 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 254 bits (649), Expect = 3e-79
Identities = 131/505 (25%), Positives = 220/505 (43%), Gaps = 56/505 (11%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYER 97
IR ++++L K K+ +V+ I +P + + ++ + A+ +A + D +
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62
Query: 98 KVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAII 156
A + G L GIP+ +KDNI T + TT S L V ++ V+ KL K A++
Sbjct: 63 ---AKDQMDGKLFGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVL 118
Query: 157 LGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGT 216
+GK ++ E++ S+ + + NP+ A P GSS GSA +VAA L +SLG+
Sbjct: 119 IGKLNMDEFAMGGST-----ETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGS 173
Query: 217 ETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGF 276
+T GSI P++ VVG+KPT G SR G++ D +GP+ R V D A VL+AI+G
Sbjct: 174 DTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233
Query: 277 DHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTL 336
D D + + + + +KG ++ + + + + + + + TL
Sbjct: 234 DVNDSTSAP----VDDVDFTSEIGK-DIKGLKVALPKE-YLGEGVADDVKEAVQNAVETL 287
Query: 337 RQEGALVID----HLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEV 392
+ GA+V + + + G I S IA+ E ++ L+ F Y + SL E+
Sbjct: 288 KSLGAVVEEVSLPNTKFG-IPSYYVIASSEASSNLSRFDGIRYGYH----SKEAHSLEEL 342
Query: 393 IAFNNK--FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNL 450
+ F K + + LS+ D K + ++ FE
Sbjct: 343 YKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN------Y 396
Query: 451 DALVTP---------------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGICF 489
D +V P +T + + G PGI+VP G S G P G+ F
Sbjct: 397 DVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SNGRPIGLQF 455
Query: 490 GGLKGTEPKLIEIAYGFEQATKIRK 514
G E L +AY +E +
Sbjct: 456 IGKPFDEKTLYRVAYQYETQYNLHD 480
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 239 bits (609), Expect = 2e-73
Identities = 215/505 (42%), Positives = 293/505 (58%), Gaps = 37/505 (7%)
Query: 37 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
FP E + DLQ +L S L + YL I R P L VIE+NPDAL +A +
Sbjct: 2 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 61
Query: 94 DYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKA 152
D ER G LRG LHGIP+LLKDNI M T+AGS AL + P DA +V +LR A
Sbjct: 62 DRER---RDGRLRGPLHGIPLLLKDNINAAP-MATSAGSLAL-QGFRPDDAYLVRRLRDA 116
Query: 153 GAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAV 212
GA++LGK +LSEW+NFR + + SG+S RGGQ +NPY +S PCGSSSGSA++VAANLA+V
Sbjct: 117 GAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASV 176
Query: 213 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 272
++GTETDGSI+CP++ N VVGLKPT+GL SR G+IPI+ QD+ GP+ R+VADAA VL A
Sbjct: 177 AIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA 236
Query: 273 IAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHH 332
IAG D DP A Y L P GL+GKR+G+++ P + PL +
Sbjct: 237 IAGRDDADP-ATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATE 295
Query: 333 LHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEV 392
L + + + + A E T +L EFK + Y +P+RSLA++
Sbjct: 296 LRRAGA-------VVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTH-RAPLRSLADL 347
Query: 393 IAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFT--RDGFEKLMSTNNL 450
IAFN S +++ +GQ+LL+ A+AT G+ + R +G + ++ + L
Sbjct: 348 IAFNQAHSK-QELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQL 406
Query: 451 DALVTP---------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGT 495
DALV P + + AV G+P + VP G +G+P G+ F G +
Sbjct: 407 DALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPVGLLFMGTAWS 465
Query: 496 EPKLIEIAYGFEQATKIRKPPSFKS 520
EPKLIE+AY +EQ T+ R+PP F +
Sbjct: 466 EPKLIEMAYAYEQRTRARRPPHFDT 490
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 224 bits (571), Expect = 5e-68
Identities = 122/500 (24%), Positives = 201/500 (40%), Gaps = 57/500 (11%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERK 98
R+ TI++ K ++ +L + L I RL+P + I V + +
Sbjct: 6 FRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKGK----- 57
Query: 99 VKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILG 158
GIP+ +KDNI T M TT S L DA VV K+++AG +++G
Sbjct: 58 ---------FWGIPVAIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVG 107
Query: 159 KASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTET 218
KA+L E++ S+ +NP+ L P GSS GSA +V+A + +LG++T
Sbjct: 108 KANLDEFAMGSST-----ERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDT 162
Query: 219 DGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDH 278
GS+ P+S VVG KPT GL SR G++ D +GPI +TV DAA +++ I+G D
Sbjct: 163 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE 222
Query: 279 YDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQ 338
D + R G+ G + V + D +++ F+ L L +
Sbjct: 223 NDA------TTVNRKVDFLSEIEEGVSGMK-FAVPEEIYEHDIEEGVSERFEEALKLLER 275
Query: 339 EGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNK 398
GA V I + AE + + + V +R + +
Sbjct: 276 LGAKVERV----KIPHIKYSVATYYVIAPAEASSNLARF--DGVKYGLRIKEKGLREMYM 329
Query: 399 FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTP-- 456
+ E + ++ T E ++ + E + DA++TP
Sbjct: 330 KTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTS 389
Query: 457 -----------------RSYASTLLA-VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPK 498
T+ A + G P I+VP G+ S +P G+ G + + K
Sbjct: 390 PVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGK 448
Query: 499 LIEIAYGFEQATKIRKPPSF 518
+ IA E+ + + F
Sbjct: 449 VFRIARAIEKNSPYNENGMF 468
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 168 bits (425), Expect = 2e-46
Identities = 87/532 (16%), Positives = 160/532 (30%), Gaps = 71/532 (13%)
Query: 27 ISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA 86
Q+ + + + + L + +L+ + YLG+ +N + V D
Sbjct: 26 FRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC 85
Query: 87 LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVV 146
+Q +A + L+G+P+ LK+ + K ++T G D VV
Sbjct: 86 ETQLSQAPRQGL---------LYGVPVSLKECFSYKG-HDSTLGLSLNEGMPSESDCVVV 135
Query: 147 VKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVA 206
L+ GA+ + +S + + GQ NP+ S P GSS G +
Sbjct: 136 QVLKLQGAVP-----FVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIG 190
Query: 207 ANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSV----GPICRT 262
+ + + LGT+ GSI PS+ + GLKPT S++G+ Q +V GP+ R
Sbjct: 191 SGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARD 250
Query: 263 VADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEG 322
V A L A+ + + + + R+G +
Sbjct: 251 VESLALCLKALLCEHLFTL------DPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSP 304
Query: 323 SPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELV 382
+ + + L+ A + F +
Sbjct: 305 AMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPC 364
Query: 383 TSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFE 442
+ + + ++ + L + + + +E + R
Sbjct: 365 LGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMY-RQSVI 423
Query: 443 KLMSTNNLDALVTP---------------RSYASTLLA-VGGFPGINVPAGY-------- 478
NLD L+TP + + T+L FP VP
Sbjct: 424 AQWKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQ 483
Query: 479 ---------------------DSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
+S G+P + L E + EQ
Sbjct: 484 MELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 535
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 126 bits (316), Expect = 2e-32
Identities = 89/467 (19%), Positives = 149/467 (31%), Gaps = 60/467 (12%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAA 102
++ DLQ + +L+ + I +H + + A +QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGP--------- 53
Query: 103 GSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASL 162
L GI + +KD I T + M T GS DA VV+ L++AGA I+GK +
Sbjct: 54 -----LRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTT 107
Query: 163 SEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSI 222
+ +++ NP+ P GSSSGSA +V A + ++LGT+T GS+
Sbjct: 108 TAFAS-----------RDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSV 156
Query: 223 LCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPA 282
+ P++ +KP+ + GV + D+VG D A L A+ G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG---RSEF 213
Query: 283 TRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGAL 342
+ PR G + ++ ++ + Q D
Sbjct: 214 SGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIH 273
Query: 343 VIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDL 402
I + +
Sbjct: 274 PIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVF 333
Query: 403 EKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYAST 462
E + D+LL+ + G + A R+ R
Sbjct: 334 EGV-----DVLLTY-SAPGTAPAKALASTGDPRYNR------------------------ 363
Query: 463 LLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
L + G P +NVP G+P G+ G + + A+ E A
Sbjct: 364 LWTLMGNPCVNVPVL-KVGGLPIGVQVIARFGNDAHALATAWFLEDA 409
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 29.5 bits (66), Expect = 1.0
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 271 DAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFD 330
+AI G D D + G P L+GKR R +F+ G+ +V +
Sbjct: 100 EAIKGVDGLDAMEPDTAP-----GL-----PWALQGKR----RGALIDFENGTVGPEV-E 144
Query: 331 HHLHTLRQEG 340
L + +
Sbjct: 145 AALKLMEKRE 154
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 27.1 bits (59), Expect = 3.8
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 258 PICRTVADAAYVLDAIA--------GFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRL 309
P+ + + + + GF+ +D + + G + L +L
Sbjct: 94 PLAASAQECENLYELAEKHHQPLYVGFNGFDAMVQDWLQVAAAGKLPTHIIERNLASHQL 153
Query: 310 G 310
Sbjct: 154 A 154
>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 268
Score = 26.8 bits (59), Expect = 6.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 280 DPATRAASEYIPRGGYKQFLRPHGLK--GKRLGIVRN-PFFNFDEGSPLAQ 327
P + + Y GG+KQ R GK + R P +N D G+PL Q
Sbjct: 16 SPEEKKTTFYT-LGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQ 65
>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 265
Score = 26.4 bits (58), Expect = 8.0
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 280 DPATRAASEYIPRGGYKQFLRPHGLK--GKRLGIVRN-PFFNFDEGSPLAQ 327
P + YI GG+KQ R K ++ R P +N D G PL Q
Sbjct: 13 SPEEKYTKFYI-FGGWKQSERKKEFKEWADKIVEERGVPHYNPDIGVPLGQ 62
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 295
Score = 26.4 bits (58), Expect = 8.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 391 EVIAFNNKFSDLEKIKE---------YGQDLL 413
E IA+NN + E + E YG+ L
Sbjct: 255 EEIAYNNGWITREDVLEMAEKLEKTDYGKYLR 286
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,836,252
Number of extensions: 85402
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 13
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)